2025-01-31 09:31:51,864 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:51,867 INFO Extracting cutcounts from bam file 2025-01-31 09:35:10,537 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:35:10,675 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:35:10,678 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:35:10,679 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:35:10,680 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:35:10,680 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:35:10,683 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:35:12,889 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:35:13,184 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:35:13,462 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:35:13,469 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:35:14,915 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:35:15,140 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:35:15,150 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:35:15,407 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:35:15,598 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:35:15,666 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:35:16,172 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:35:16,949 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:35:16,961 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:35:17,059 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:35:17,282 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:35:18,604 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:35:18,605 INFO Total cutcounts = 35570818 2025-01-31 09:35:18,610 INFO Smoothing signal using MODWT 2025-01-31 09:35:18,612 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:35:18,649 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:18,652 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:18,653 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:18,654 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:18,654 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:18,654 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:41,434 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:43,004 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:45,035 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:58,792 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:17,153 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:35,993 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:38,552 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:52,662 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:53,318 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:55,874 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:00,071 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:28,477 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:25,837 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:32,131 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:33,734 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:42:54,910 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:42:54,911 INFO Estimating parameters of background model 2025-01-31 09:42:54,911 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:42:59,973 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:43:00,078 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:43:00,271 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:43:00,969 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:43:01,155 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:43:01,629 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:43:17,233 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:43:17,235 DEBUG chrX: Signal quantile: 0.995. signal threshold: 17. Best RMSEA: 0.018 2025-01-31 09:43:17,763 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:43:17,765 DEBUG chr3: Signal quantile: 0.992. signal threshold: 19. Best RMSEA: 0.014 2025-01-31 09:43:19,896 DEBUG chrX total SNP count: 249298 2025-01-31 09:43:19,896 DEBUG chrX length: 171031299 2025-01-31 09:43:19,896 DEBUG ----------------------------------------- 2025-01-31 09:43:19,896 INFO Processing SNPs in chrX 2025-01-31 09:43:20,253 DEBUG chr3 total SNP count: 273235 2025-01-31 09:43:20,253 DEBUG chr3 length: 160039680 2025-01-31 09:43:20,253 DEBUG ----------------------------------------- 2025-01-31 09:43:20,253 INFO Processing SNPs in chr3 2025-01-31 09:43:20,285 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 33171), (33171, 33234), (33234, 177540), (177540, 177542), (177542, 249298)] 2025-01-31 09:43:20,399 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:20,522 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 273235)] 2025-01-31 09:43:20,703 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:21,010 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:43:21,011 DEBUG chr5: Signal quantile: 0.990. signal threshold: 20. Best RMSEA: 0.013 2025-01-31 09:43:22,285 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:43:22,288 DEBUG chr4: Signal quantile: 0.990. signal threshold: 21. Best RMSEA: 0.012 2025-01-31 09:43:23,369 DEBUG chr5 total SNP count: 259669 2025-01-31 09:43:23,369 DEBUG chr5 length: 151834684 2025-01-31 09:43:23,369 DEBUG ----------------------------------------- 2025-01-31 09:43:23,369 INFO Processing SNPs in chr5 2025-01-31 09:43:23,625 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 259669)] 2025-01-31 09:43:23,800 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:24,286 DEBUG Segmenting atomic regions: 2025-01-31 09:43:24,392 DEBUG Processing 1/109 atomic regions from SNP 0 to 602 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:24,864 DEBUG chr4 total SNP count: 262663 2025-01-31 09:43:24,864 DEBUG chr4 length: 156508116 2025-01-31 09:43:24,864 DEBUG ----------------------------------------- 2025-01-31 09:43:24,864 INFO Processing SNPs in chr4 2025-01-31 09:43:25,055 DEBUG Processing 2/109 atomic regions from SNP 302 to 904 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:25,259 DEBUG Processing 3/109 atomic regions from SNP 604 to 1206 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:25,269 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 66418), (66418, 262663)] 2025-01-31 09:43:25,357 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:43:25,360 DEBUG chr1: Signal quantile: 0.992. signal threshold: 21. Best RMSEA: 0.013 2025-01-31 09:43:25,398 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:25,463 DEBUG Processing 4/109 atomic regions from SNP 906 to 1508 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:25,667 DEBUG Processing 5/109 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:25,870 DEBUG Processing 6/109 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:26,040 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:43:26,042 DEBUG chr2: Signal quantile: 0.990. signal threshold: 20. Best RMSEA: 0.012 2025-01-31 09:43:26,075 DEBUG Processing 7/109 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:26,280 DEBUG Processing 8/109 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:26,484 DEBUG Processing 9/109 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:26,689 DEBUG Processing 10/109 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:26,896 DEBUG Processing 11/109 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:27,121 DEBUG Processing 12/109 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:27,350 DEBUG Processing 13/109 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:27,578 DEBUG Processing 14/109 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:27,817 DEBUG Processing 15/109 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:28,057 DEBUG Processing 16/109 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:28,294 DEBUG Processing 17/109 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:28,394 DEBUG chr1 total SNP count: 342153 2025-01-31 09:43:28,394 DEBUG chr1 length: 195471971 2025-01-31 09:43:28,394 DEBUG ----------------------------------------- 2025-01-31 09:43:28,394 INFO Processing SNPs in chr1 2025-01-31 09:43:28,533 DEBUG Processing 18/109 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:28,730 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 342153)] 2025-01-31 09:43:28,757 DEBUG Processing 19/109 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:28,908 DEBUG chr2 total SNP count: 317300 2025-01-31 09:43:28,908 DEBUG chr2 length: 182113224 2025-01-31 09:43:28,908 DEBUG ----------------------------------------- 2025-01-31 09:43:28,908 INFO Processing SNPs in chr2 2025-01-31 09:43:28,954 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:28,960 DEBUG Processing 20/109 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:29,167 DEBUG Processing 21/109 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:29,372 DEBUG Processing 22/109 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:29,397 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 309432), (309432, 317300)] 2025-01-31 09:43:29,599 DEBUG Processing 23/109 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:29,605 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:29,811 DEBUG Processing 24/109 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:30,012 DEBUG Processing 25/109 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:30,212 DEBUG Processing 26/109 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:30,422 DEBUG Processing 27/109 atomic regions from SNP 7852 to 8454 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:30,622 DEBUG Processing 28/109 atomic regions from SNP 8154 to 8756 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:30,822 DEBUG Processing 29/109 atomic regions from SNP 8456 to 9058 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:31,022 DEBUG Processing 30/109 atomic regions from SNP 8758 to 9360 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:31,246 DEBUG Processing 31/109 atomic regions from SNP 9060 to 9662 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:31,456 DEBUG Processing 32/109 atomic regions from SNP 9362 to 9964 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:31,655 DEBUG Processing 33/109 atomic regions from SNP 9664 to 10266 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:31,858 DEBUG Processing 34/109 atomic regions from SNP 9966 to 10568 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:32,076 DEBUG Processing 35/109 atomic regions from SNP 10268 to 10870 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:32,300 DEBUG Processing 36/109 atomic regions from SNP 10570 to 11172 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:32,523 DEBUG Processing 37/109 atomic regions from SNP 10872 to 11474 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:32,753 DEBUG Processing 38/109 atomic regions from SNP 11174 to 11776 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:32,988 DEBUG Processing 39/109 atomic regions from SNP 11476 to 12078 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:33,158 DEBUG Segmenting atomic regions: 2025-01-31 09:43:33,224 DEBUG Processing 40/109 atomic regions from SNP 11778 to 12380 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:33,271 DEBUG Processing 1/220 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,455 DEBUG Processing 41/109 atomic regions from SNP 12080 to 12682 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:33,683 DEBUG Processing 42/109 atomic regions from SNP 12382 to 12984 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:33,906 DEBUG Processing 43/109 atomic regions from SNP 12684 to 13286 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:33,948 DEBUG Processing 2/220 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,138 DEBUG Processing 44/109 atomic regions from SNP 12986 to 13588 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:34,162 DEBUG Processing 3/220 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,370 DEBUG Processing 45/109 atomic regions from SNP 13288 to 13890 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:34,380 DEBUG Processing 4/220 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,603 DEBUG Processing 46/109 atomic regions from SNP 13590 to 14192 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:34,618 DEBUG Processing 5/220 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,830 DEBUG Processing 47/109 atomic regions from SNP 13892 to 14494 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:34,834 DEBUG Processing 6/220 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,046 DEBUG Processing 48/109 atomic regions from SNP 14194 to 14796 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:35,048 DEBUG Processing 7/220 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,244 DEBUG Processing 49/109 atomic regions from SNP 14496 to 15098 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:35,263 DEBUG Processing 8/220 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,442 DEBUG Processing 50/109 atomic regions from SNP 14798 to 15400 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:35,478 DEBUG Processing 9/220 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,641 DEBUG Processing 51/109 atomic regions from SNP 15100 to 15702 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:35,691 DEBUG Processing 10/220 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,847 DEBUG Processing 52/109 atomic regions from SNP 15402 to 16004 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:35,913 DEBUG Processing 11/220 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,045 DEBUG Processing 53/109 atomic regions from SNP 15704 to 16306 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:36,127 DEBUG Processing 12/220 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,240 DEBUG Processing 54/109 atomic regions from SNP 16006 to 16608 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:36,343 DEBUG Processing 13/220 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,437 DEBUG Processing 55/109 atomic regions from SNP 16308 to 16910 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:36,563 DEBUG Processing 14/220 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,636 DEBUG Processing 56/109 atomic regions from SNP 16610 to 17212 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:36,781 DEBUG Processing 15/220 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,836 DEBUG Processing 57/109 atomic regions from SNP 16912 to 17514 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:37,000 DEBUG Processing 16/220 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,037 DEBUG Processing 58/109 atomic regions from SNP 17214 to 17816 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:37,217 DEBUG Processing 17/220 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,240 DEBUG Processing 59/109 atomic regions from SNP 17516 to 18118 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:37,435 DEBUG Processing 18/220 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,443 DEBUG Processing 60/109 atomic regions from SNP 17818 to 18420 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:37,644 DEBUG Processing 61/109 atomic regions from SNP 18120 to 18722 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:37,666 DEBUG Processing 19/220 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,845 DEBUG Processing 62/109 atomic regions from SNP 18422 to 19023 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:37,882 DEBUG Processing 20/220 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,046 DEBUG Processing 63/109 atomic regions from SNP 18723 to 19324 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:38,098 DEBUG Processing 21/220 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,247 DEBUG Processing 64/109 atomic regions from SNP 19024 to 19625 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:38,311 DEBUG Processing 22/220 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,451 DEBUG Processing 65/109 atomic regions from SNP 19325 to 19926 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:38,525 DEBUG Processing 23/220 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,655 DEBUG Processing 66/109 atomic regions from SNP 19626 to 20227 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:38,740 DEBUG Processing 24/220 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,858 DEBUG Processing 67/109 atomic regions from SNP 19927 to 20528 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:38,954 DEBUG Processing 25/220 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,063 DEBUG Processing 68/109 atomic regions from SNP 20228 to 20829 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:39,166 DEBUG Processing 26/220 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,268 DEBUG Processing 69/109 atomic regions from SNP 20529 to 21130 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:39,376 DEBUG Processing 27/220 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,472 DEBUG Processing 70/109 atomic regions from SNP 20830 to 21431 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:39,585 DEBUG Processing 28/220 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,677 DEBUG Processing 71/109 atomic regions from SNP 21131 to 21732 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:39,796 DEBUG Processing 29/220 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,879 DEBUG Processing 72/109 atomic regions from SNP 21432 to 22033 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:40,009 DEBUG Processing 30/220 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,081 DEBUG Processing 73/109 atomic regions from SNP 21733 to 22334 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:40,238 DEBUG Processing 31/220 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,309 DEBUG Processing 74/109 atomic regions from SNP 22034 to 22635 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:40,475 DEBUG Processing 32/220 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,520 DEBUG Processing 75/109 atomic regions from SNP 22335 to 22936 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:40,688 DEBUG Processing 33/220 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,723 DEBUG Processing 76/109 atomic regions from SNP 22636 to 23237 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:40,902 DEBUG Processing 34/220 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,925 DEBUG Processing 77/109 atomic regions from SNP 22937 to 23538 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:41,120 DEBUG Processing 35/220 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,138 DEBUG Processing 78/109 atomic regions from SNP 23238 to 23839 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:41,338 DEBUG Processing 36/220 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,344 DEBUG Processing 79/109 atomic regions from SNP 23539 to 24140 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:41,547 DEBUG Processing 80/109 atomic regions from SNP 23840 to 24441 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:41,556 DEBUG Processing 37/220 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,751 DEBUG Processing 81/109 atomic regions from SNP 24141 to 24742 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:41,788 DEBUG Processing 38/220 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,952 DEBUG Processing 82/109 atomic regions from SNP 24442 to 25043 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:42,004 DEBUG Processing 39/220 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,153 DEBUG Processing 83/109 atomic regions from SNP 24743 to 25344 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:42,220 DEBUG Processing 40/220 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,356 DEBUG Processing 84/109 atomic regions from SNP 25044 to 25645 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:42,435 DEBUG Processing 41/220 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,559 DEBUG Processing 85/109 atomic regions from SNP 25345 to 25946 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:42,649 DEBUG Processing 42/220 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,773 DEBUG Processing 86/109 atomic regions from SNP 25646 to 26247 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:42,865 DEBUG Processing 43/220 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,991 DEBUG Processing 87/109 atomic regions from SNP 25947 to 26548 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:43,081 DEBUG Processing 44/220 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,222 DEBUG Processing 88/109 atomic regions from SNP 26248 to 26849 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:43,322 DEBUG Processing 45/220 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,449 DEBUG Processing 89/109 atomic regions from SNP 26549 to 27150 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:43,571 DEBUG Processing 46/220 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,664 DEBUG Processing 90/109 atomic regions from SNP 26850 to 27451 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:43,803 DEBUG Processing 47/220 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,863 DEBUG Processing 91/109 atomic regions from SNP 27151 to 27752 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:44,021 DEBUG Processing 48/220 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,063 DEBUG Processing 92/109 atomic regions from SNP 27452 to 28053 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:44,237 DEBUG Processing 49/220 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,262 DEBUG Processing 93/109 atomic regions from SNP 27753 to 28354 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:44,456 DEBUG Processing 50/220 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,464 DEBUG Processing 94/109 atomic regions from SNP 28054 to 28655 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:44,665 DEBUG Processing 95/109 atomic regions from SNP 28355 to 28956 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:44,676 DEBUG Processing 51/220 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,865 DEBUG Processing 96/109 atomic regions from SNP 28656 to 29257 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:44,890 DEBUG Processing 52/220 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,067 DEBUG Processing 97/109 atomic regions from SNP 28957 to 29558 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:45,104 DEBUG Processing 53/220 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,269 DEBUG Processing 98/109 atomic regions from SNP 29258 to 29859 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:45,318 DEBUG Processing 54/220 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,469 DEBUG Processing 99/109 atomic regions from SNP 29559 to 30160 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:45,532 DEBUG Processing 55/220 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,669 DEBUG Processing 100/109 atomic regions from SNP 29860 to 30461 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:45,747 DEBUG Processing 56/220 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,867 DEBUG Processing 101/109 atomic regions from SNP 30161 to 30762 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:45,961 DEBUG Processing 57/220 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,067 DEBUG Processing 102/109 atomic regions from SNP 30462 to 31063 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:46,175 DEBUG Processing 58/220 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,265 DEBUG Processing 103/109 atomic regions from SNP 30763 to 31364 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:46,392 DEBUG Processing 59/220 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,467 DEBUG Processing 104/109 atomic regions from SNP 31064 to 31665 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:46,608 DEBUG Processing 60/220 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,666 DEBUG Processing 105/109 atomic regions from SNP 31365 to 31966 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:46,844 DEBUG Processing 61/220 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,867 DEBUG Processing 106/109 atomic regions from SNP 31666 to 32267 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:47,068 DEBUG Processing 107/109 atomic regions from SNP 31967 to 32568 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:47,076 DEBUG Processing 62/220 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,269 DEBUG Processing 108/109 atomic regions from SNP 32268 to 32869 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:47,292 DEBUG Processing 63/220 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,468 DEBUG Processing 109/109 atomic regions from SNP 32569 to 33170 for chrX (subchromosome 1 of 5). 2025-01-31 09:43:47,509 DEBUG Processing 64/220 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,559 DEBUG Unique SNPs positions in subchromosome 1: 33171 2025-01-31 09:43:47,649 DEBUG Subchromosome time: 27.249759962782264, subchromosome SNPs: 33171 2025-01-31 09:43:47,683 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:47,724 DEBUG Processing 65/220 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,935 DEBUG Processing 66/220 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,147 DEBUG Processing 67/220 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,357 DEBUG Processing 68/220 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,569 DEBUG Processing 69/220 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,785 DEBUG Processing 70/220 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,001 DEBUG Processing 71/220 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,216 DEBUG Processing 72/220 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,432 DEBUG Processing 73/220 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,647 DEBUG Processing 74/220 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,859 DEBUG Processing 75/220 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,074 DEBUG Processing 76/220 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,289 DEBUG Processing 77/220 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,506 DEBUG Processing 78/220 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,721 DEBUG Processing 79/220 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,936 DEBUG Processing 80/220 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,150 DEBUG Processing 81/220 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,362 DEBUG Processing 82/220 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,576 DEBUG Processing 83/220 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,798 DEBUG Processing 84/220 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,016 DEBUG Processing 85/220 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,234 DEBUG Processing 86/220 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,450 DEBUG Processing 87/220 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,626 DEBUG Segmenting atomic regions: 2025-01-31 09:43:52,663 DEBUG Processing 88/220 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,746 DEBUG Processing 1/909 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,878 DEBUG Processing 89/220 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,092 DEBUG Processing 90/220 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,306 DEBUG Processing 91/220 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,383 DEBUG Processing 2/909 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,522 DEBUG Processing 92/220 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,596 DEBUG Processing 3/909 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,736 DEBUG Processing 93/220 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,808 DEBUG Processing 4/909 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,954 DEBUG Processing 94/220 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,018 DEBUG Processing 5/909 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,173 DEBUG Processing 95/220 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,235 DEBUG Processing 6/909 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,380 DEBUG Segmenting atomic regions: 2025-01-31 09:43:54,391 DEBUG Processing 96/220 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,452 DEBUG Processing 7/909 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,492 DEBUG Processing 1/864 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,608 DEBUG Processing 97/220 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,673 DEBUG Processing 8/909 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,824 DEBUG Processing 98/220 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,894 DEBUG Processing 9/909 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,040 DEBUG Processing 99/220 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,111 DEBUG Processing 10/909 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,254 DEBUG Processing 100/220 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,328 DEBUG Processing 11/909 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,453 DEBUG Processing 2/864 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,468 DEBUG Processing 101/220 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,545 DEBUG Processing 12/909 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,660 DEBUG Processing 3/864 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,685 DEBUG Processing 102/220 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,758 DEBUG Processing 13/909 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,882 DEBUG Processing 4/864 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,904 DEBUG Processing 103/220 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,974 DEBUG Processing 14/909 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,086 DEBUG Processing 5/864 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,122 DEBUG Processing 104/220 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:56,190 DEBUG Processing 15/909 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,293 DEBUG Processing 6/864 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,340 DEBUG Processing 105/220 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:56,407 DEBUG Processing 16/909 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,495 DEBUG Processing 7/864 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,579 DEBUG Processing 106/220 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:56,623 DEBUG Processing 17/909 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,700 DEBUG Processing 8/864 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,803 DEBUG Processing 107/220 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:56,840 DEBUG Processing 18/909 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,906 DEBUG Processing 9/864 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,017 DEBUG Processing 108/220 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:57,053 DEBUG Processing 19/909 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,115 DEBUG Processing 10/864 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,232 DEBUG Processing 109/220 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:57,268 DEBUG Processing 20/909 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,325 DEBUG Processing 11/864 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,446 DEBUG Processing 110/220 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:57,482 DEBUG Processing 21/909 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,533 DEBUG Processing 12/864 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,660 DEBUG Processing 111/220 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:57,696 DEBUG Processing 22/909 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,742 DEBUG Processing 13/864 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,874 DEBUG Processing 112/220 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:57,910 DEBUG Processing 23/909 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,952 DEBUG Processing 14/864 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,088 DEBUG Processing 113/220 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,126 DEBUG Processing 24/909 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,160 DEBUG Processing 15/864 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,302 DEBUG Processing 114/220 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,342 DEBUG Processing 25/909 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,371 DEBUG Processing 16/864 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,517 DEBUG Processing 115/220 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,562 DEBUG Processing 26/909 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,581 DEBUG Processing 17/864 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,732 DEBUG Processing 116/220 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,780 DEBUG Processing 27/909 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,791 DEBUG Processing 18/864 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,946 DEBUG Processing 117/220 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,998 DEBUG Processing 28/909 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,999 DEBUG Processing 19/864 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,162 DEBUG Processing 118/220 atomic regions from SNP 35217 to 35817 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,207 DEBUG Processing 20/864 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,215 DEBUG Processing 29/909 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,379 DEBUG Processing 119/220 atomic regions from SNP 35517 to 36117 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,414 DEBUG Processing 21/864 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,432 DEBUG Processing 30/909 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,598 DEBUG Processing 120/220 atomic regions from SNP 35817 to 36417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,622 DEBUG Processing 22/864 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,649 DEBUG Processing 31/909 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,816 DEBUG Processing 121/220 atomic regions from SNP 36117 to 36717 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,830 DEBUG Processing 23/864 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,865 DEBUG Processing 32/909 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,034 DEBUG Processing 122/220 atomic regions from SNP 36417 to 37017 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,038 DEBUG Processing 24/864 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,092 DEBUG Processing 33/909 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,247 DEBUG Processing 25/864 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,255 DEBUG Processing 123/220 atomic regions from SNP 36717 to 37317 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,328 DEBUG Processing 34/909 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,456 DEBUG Processing 26/864 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,473 DEBUG Processing 124/220 atomic regions from SNP 37017 to 37617 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,542 DEBUG Processing 35/909 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,662 DEBUG Processing 27/864 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,689 DEBUG Processing 125/220 atomic regions from SNP 37317 to 37917 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,755 DEBUG Processing 36/909 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,868 DEBUG Processing 28/864 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,907 DEBUG Processing 126/220 atomic regions from SNP 37617 to 38217 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,967 DEBUG Processing 37/909 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,072 DEBUG Processing 29/864 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,126 DEBUG Processing 127/220 atomic regions from SNP 37917 to 38517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,180 DEBUG Processing 38/909 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,277 DEBUG Processing 30/864 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,344 DEBUG Processing 128/220 atomic regions from SNP 38217 to 38817 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,392 DEBUG Processing 39/909 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,481 DEBUG Processing 31/864 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,563 DEBUG Processing 129/220 atomic regions from SNP 38517 to 39117 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,609 DEBUG Processing 40/909 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,684 DEBUG Processing 32/864 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,782 DEBUG Processing 130/220 atomic regions from SNP 38817 to 39417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,839 DEBUG Processing 41/909 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,889 DEBUG Processing 33/864 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,999 DEBUG Processing 131/220 atomic regions from SNP 39117 to 39717 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,078 DEBUG Processing 42/909 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,095 DEBUG Processing 34/864 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,215 DEBUG Processing 132/220 atomic regions from SNP 39417 to 40017 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,302 DEBUG Processing 43/909 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,303 DEBUG Processing 35/864 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,430 DEBUG Processing 133/220 atomic regions from SNP 39717 to 40317 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,509 DEBUG Processing 36/864 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,518 DEBUG Processing 44/909 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,647 DEBUG Processing 134/220 atomic regions from SNP 40017 to 40617 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,716 DEBUG Processing 37/864 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,732 DEBUG Processing 45/909 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,862 DEBUG Processing 135/220 atomic regions from SNP 40317 to 40917 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,922 DEBUG Processing 38/864 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,945 DEBUG Processing 46/909 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,079 DEBUG Processing 136/220 atomic regions from SNP 40617 to 41217 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,125 DEBUG Processing 39/864 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,159 DEBUG Processing 47/909 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,295 DEBUG Processing 137/220 atomic regions from SNP 40917 to 41517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,329 DEBUG Processing 40/864 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,376 DEBUG Processing 48/909 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,513 DEBUG Processing 138/220 atomic regions from SNP 41217 to 41817 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,536 DEBUG Processing 41/864 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,598 DEBUG Processing 49/909 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,730 DEBUG Processing 139/220 atomic regions from SNP 41517 to 42117 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,742 DEBUG Processing 42/864 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,814 DEBUG Processing 50/909 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,946 DEBUG Processing 43/864 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,946 DEBUG Processing 140/220 atomic regions from SNP 41817 to 42417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,031 DEBUG Processing 51/909 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,150 DEBUG Processing 44/864 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,162 DEBUG Processing 141/220 atomic regions from SNP 42117 to 42717 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,246 DEBUG Processing 52/909 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,353 DEBUG Processing 45/864 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,375 DEBUG Processing 142/220 atomic regions from SNP 42417 to 43017 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,461 DEBUG Processing 53/909 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,490 DEBUG Segmenting atomic regions: 2025-01-31 09:44:04,556 DEBUG Processing 46/864 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,590 DEBUG Processing 143/220 atomic regions from SNP 42717 to 43317 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,598 DEBUG Processing 1/480 atomic regions from SNP 0 to 601 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:04,675 DEBUG Processing 54/909 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,762 DEBUG Processing 47/864 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,809 DEBUG Processing 144/220 atomic regions from SNP 43017 to 43617 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,811 DEBUG Processing 2/480 atomic regions from SNP 301 to 902 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:04,891 DEBUG Processing 55/909 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,966 DEBUG Processing 48/864 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,021 DEBUG Processing 3/480 atomic regions from SNP 602 to 1203 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:05,027 DEBUG Processing 145/220 atomic regions from SNP 43317 to 43917 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,109 DEBUG Processing 56/909 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,173 DEBUG Processing 49/864 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,222 DEBUG Processing 4/480 atomic regions from SNP 903 to 1504 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:05,241 DEBUG Processing 146/220 atomic regions from SNP 43617 to 44217 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,325 DEBUG Processing 57/909 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,381 DEBUG Processing 50/864 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,425 DEBUG Processing 5/480 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:05,452 DEBUG Processing 147/220 atomic regions from SNP 43917 to 44517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,539 DEBUG Processing 58/909 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,590 DEBUG Processing 51/864 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,627 DEBUG Processing 6/480 atomic regions from SNP 1505 to 2105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:05,650 DEBUG Segmenting atomic regions: 2025-01-31 09:44:05,666 DEBUG Processing 148/220 atomic regions from SNP 44217 to 44817 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,751 DEBUG Processing 59/909 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,787 DEBUG Processing 1/1030 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,799 DEBUG Processing 52/864 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,836 DEBUG Processing 7/480 atomic regions from SNP 1805 to 2405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:05,887 DEBUG Processing 149/220 atomic regions from SNP 44517 to 45117 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,965 DEBUG Processing 60/909 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,009 DEBUG Processing 53/864 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,058 DEBUG Processing 8/480 atomic regions from SNP 2105 to 2705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:06,105 DEBUG Processing 150/220 atomic regions from SNP 44817 to 45417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,179 DEBUG Processing 61/909 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,216 DEBUG Processing 54/864 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,282 DEBUG Processing 9/480 atomic regions from SNP 2405 to 3005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:06,323 DEBUG Processing 151/220 atomic regions from SNP 45117 to 45717 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,396 DEBUG Processing 62/909 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,423 DEBUG Processing 55/864 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,488 DEBUG Processing 2/1030 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,520 DEBUG Processing 10/480 atomic regions from SNP 2705 to 3305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:06,541 DEBUG Processing 152/220 atomic regions from SNP 45417 to 46017 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,610 DEBUG Processing 63/909 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,630 DEBUG Processing 56/864 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,748 DEBUG Processing 3/1030 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,752 DEBUG Processing 11/480 atomic regions from SNP 3005 to 3605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:06,758 DEBUG Processing 153/220 atomic regions from SNP 45717 to 46317 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,827 DEBUG Processing 64/909 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,840 DEBUG Processing 57/864 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,976 DEBUG Processing 154/220 atomic regions from SNP 46017 to 46617 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,982 DEBUG Processing 12/480 atomic regions from SNP 3305 to 3905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:06,995 DEBUG Processing 4/1030 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,046 DEBUG Processing 65/909 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,048 DEBUG Processing 58/864 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,195 DEBUG Processing 155/220 atomic regions from SNP 46317 to 46917 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,207 DEBUG Processing 13/480 atomic regions from SNP 3605 to 4205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:07,234 DEBUG Processing 5/1030 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,256 DEBUG Processing 59/864 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,264 DEBUG Processing 66/909 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,414 DEBUG Processing 156/220 atomic regions from SNP 46617 to 47217 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,433 DEBUG Processing 14/480 atomic regions from SNP 3905 to 4505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:07,467 DEBUG Processing 60/864 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,474 DEBUG Processing 6/1030 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,494 DEBUG Processing 67/909 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,632 DEBUG Processing 157/220 atomic regions from SNP 46917 to 47517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,653 DEBUG Processing 15/480 atomic regions from SNP 4205 to 4805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:07,677 DEBUG Processing 61/864 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,714 DEBUG Processing 7/1030 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,720 DEBUG Processing 68/909 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,848 DEBUG Processing 158/220 atomic regions from SNP 47217 to 47817 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,869 DEBUG Processing 16/480 atomic regions from SNP 4505 to 5105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:07,889 DEBUG Processing 62/864 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,938 DEBUG Processing 69/909 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,954 DEBUG Processing 8/1030 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,065 DEBUG Processing 159/220 atomic regions from SNP 47517 to 48117 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,094 DEBUG Processing 17/480 atomic regions from SNP 4805 to 5405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:08,099 DEBUG Processing 63/864 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,156 DEBUG Processing 70/909 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,190 DEBUG Processing 9/1030 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,285 DEBUG Processing 160/220 atomic regions from SNP 47817 to 48417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,310 DEBUG Processing 64/864 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,338 DEBUG Processing 18/480 atomic regions from SNP 5105 to 5705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:08,375 DEBUG Processing 71/909 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,442 DEBUG Processing 10/1030 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,506 DEBUG Processing 161/220 atomic regions from SNP 48117 to 48717 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,520 DEBUG Processing 65/864 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,550 DEBUG Processing 19/480 atomic regions from SNP 5405 to 6005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:08,591 DEBUG Processing 72/909 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,676 DEBUG Processing 11/1030 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,726 DEBUG Processing 162/220 atomic regions from SNP 48417 to 49017 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,732 DEBUG Processing 66/864 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,756 DEBUG Processing 20/480 atomic regions from SNP 5705 to 6305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:08,808 DEBUG Processing 73/909 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,845 DEBUG Segmenting atomic regions: 2025-01-31 09:44:08,937 DEBUG Processing 12/1030 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,944 DEBUG Processing 67/864 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,945 DEBUG Processing 163/220 atomic regions from SNP 48717 to 49317 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,965 DEBUG Processing 21/480 atomic regions from SNP 6005 to 6605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:08,992 DEBUG Processing 1/1139 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,024 DEBUG Processing 74/909 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,160 DEBUG Processing 68/864 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,166 DEBUG Processing 164/220 atomic regions from SNP 49017 to 49617 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,177 DEBUG Processing 22/480 atomic regions from SNP 6305 to 6905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:09,197 DEBUG Processing 13/1030 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,244 DEBUG Processing 75/909 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,377 DEBUG Processing 69/864 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,387 DEBUG Processing 165/220 atomic regions from SNP 49317 to 49917 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,389 DEBUG Processing 23/480 atomic regions from SNP 6605 to 7205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:09,441 DEBUG Processing 14/1030 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,461 DEBUG Processing 76/909 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,591 DEBUG Processing 70/864 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,601 DEBUG Processing 24/480 atomic regions from SNP 6905 to 7505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:09,609 DEBUG Processing 166/220 atomic regions from SNP 49617 to 50217 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,678 DEBUG Processing 77/909 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,681 DEBUG Processing 15/1030 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,708 DEBUG Processing 2/1139 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,804 DEBUG Processing 71/864 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,812 DEBUG Processing 25/480 atomic regions from SNP 7205 to 7805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:09,832 DEBUG Processing 167/220 atomic regions from SNP 49917 to 50517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,897 DEBUG Processing 78/909 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,919 DEBUG Processing 16/1030 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,953 DEBUG Processing 3/1139 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,016 DEBUG Processing 72/864 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,020 DEBUG Processing 26/480 atomic regions from SNP 7505 to 8105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:10,056 DEBUG Processing 168/220 atomic regions from SNP 50217 to 50817 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,115 DEBUG Processing 79/909 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,157 DEBUG Processing 17/1030 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,199 DEBUG Processing 4/1139 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,226 DEBUG Processing 73/864 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,227 DEBUG Processing 27/480 atomic regions from SNP 7805 to 8405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:10,283 DEBUG Processing 169/220 atomic regions from SNP 50517 to 51117 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,334 DEBUG Processing 80/909 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,406 DEBUG Processing 18/1030 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,433 DEBUG Processing 28/480 atomic regions from SNP 8105 to 8705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:10,436 DEBUG Processing 74/864 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,445 DEBUG Processing 5/1139 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,518 DEBUG Processing 170/220 atomic regions from SNP 50817 to 51417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,552 DEBUG Processing 81/909 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,641 DEBUG Processing 29/480 atomic regions from SNP 8405 to 9005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:10,650 DEBUG Processing 75/864 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,663 DEBUG Processing 19/1030 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,693 DEBUG Processing 6/1139 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,757 DEBUG Processing 171/220 atomic regions from SNP 51117 to 51717 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,771 DEBUG Processing 82/909 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,849 DEBUG Processing 30/480 atomic regions from SNP 8705 to 9305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:10,863 DEBUG Processing 76/864 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,928 DEBUG Processing 20/1030 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,941 DEBUG Processing 7/1139 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,988 DEBUG Processing 83/909 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,001 DEBUG Processing 172/220 atomic regions from SNP 51417 to 52017 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,057 DEBUG Processing 31/480 atomic regions from SNP 9005 to 9605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:11,072 DEBUG Processing 77/864 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,187 DEBUG Processing 8/1139 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,192 DEBUG Processing 21/1030 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,209 DEBUG Processing 84/909 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,233 DEBUG Processing 173/220 atomic regions from SNP 51717 to 52317 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,266 DEBUG Processing 32/480 atomic regions from SNP 9305 to 9905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:11,284 DEBUG Processing 78/864 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,432 DEBUG Processing 85/909 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,435 DEBUG Processing 9/1139 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,447 DEBUG Processing 22/1030 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,449 DEBUG Processing 174/220 atomic regions from SNP 52017 to 52617 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,477 DEBUG Processing 33/480 atomic regions from SNP 9605 to 10205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:11,492 DEBUG Processing 79/864 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,657 DEBUG Processing 86/909 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,669 DEBUG Processing 175/220 atomic regions from SNP 52317 to 52917 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,692 DEBUG Processing 10/1139 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,696 DEBUG Processing 34/480 atomic regions from SNP 9905 to 10505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:11,696 DEBUG Processing 23/1030 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,707 DEBUG Processing 80/864 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,880 DEBUG Processing 87/909 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,889 DEBUG Processing 176/220 atomic regions from SNP 52617 to 53217 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,911 DEBUG Processing 35/480 atomic regions from SNP 10205 to 10805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:11,925 DEBUG Processing 81/864 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,944 DEBUG Processing 24/1030 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,950 DEBUG Processing 11/1139 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,103 DEBUG Processing 88/909 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,110 DEBUG Processing 177/220 atomic regions from SNP 52917 to 53517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,130 DEBUG Processing 36/480 atomic regions from SNP 10505 to 11105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:12,141 DEBUG Processing 82/864 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,188 DEBUG Processing 25/1030 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,205 DEBUG Processing 12/1139 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,331 DEBUG Processing 178/220 atomic regions from SNP 53217 to 53817 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,332 DEBUG Processing 89/909 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,357 DEBUG Processing 83/864 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,367 DEBUG Processing 37/480 atomic regions from SNP 10805 to 11405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:12,430 DEBUG Processing 26/1030 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,449 DEBUG Processing 13/1139 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,551 DEBUG Processing 179/220 atomic regions from SNP 53517 to 54117 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,571 DEBUG Processing 84/864 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,579 DEBUG Processing 90/909 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,604 DEBUG Processing 38/480 atomic regions from SNP 11105 to 11705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:12,669 DEBUG Processing 27/1030 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,696 DEBUG Processing 14/1139 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,768 DEBUG Processing 180/220 atomic regions from SNP 53817 to 54417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,785 DEBUG Processing 85/864 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,800 DEBUG Processing 91/909 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,812 DEBUG Processing 39/480 atomic regions from SNP 11405 to 12005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:12,904 DEBUG Processing 28/1030 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,942 DEBUG Processing 15/1139 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,992 DEBUG Processing 181/220 atomic regions from SNP 54117 to 54717 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,997 DEBUG Processing 86/864 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,022 DEBUG Processing 40/480 atomic regions from SNP 11705 to 12305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:13,045 DEBUG Processing 92/909 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,142 DEBUG Processing 29/1030 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,190 DEBUG Processing 16/1139 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,207 DEBUG Processing 87/864 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,229 DEBUG Processing 182/220 atomic regions from SNP 54417 to 55017 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,231 DEBUG Processing 41/480 atomic regions from SNP 12005 to 12605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:13,287 DEBUG Processing 93/909 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,380 DEBUG Processing 30/1030 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,420 DEBUG Processing 88/864 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,438 DEBUG Processing 42/480 atomic regions from SNP 12305 to 12905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:13,439 DEBUG Processing 17/1139 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,459 DEBUG Processing 183/220 atomic regions from SNP 54717 to 55317 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,507 DEBUG Processing 94/909 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,619 DEBUG Processing 31/1030 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,631 DEBUG Processing 89/864 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,648 DEBUG Processing 43/480 atomic regions from SNP 12605 to 13205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:13,680 DEBUG Processing 184/220 atomic regions from SNP 55017 to 55617 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,687 DEBUG Processing 18/1139 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,732 DEBUG Processing 95/909 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,842 DEBUG Processing 90/864 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,856 DEBUG Processing 44/480 atomic regions from SNP 12905 to 13505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:13,857 DEBUG Processing 32/1030 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,900 DEBUG Processing 185/220 atomic regions from SNP 55317 to 55917 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,934 DEBUG Processing 19/1139 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,951 DEBUG Processing 96/909 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,052 DEBUG Processing 91/864 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,066 DEBUG Processing 45/480 atomic regions from SNP 13205 to 13805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:14,096 DEBUG Processing 33/1030 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,121 DEBUG Processing 186/220 atomic regions from SNP 55617 to 56217 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,174 DEBUG Processing 97/909 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,182 DEBUG Processing 20/1139 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,263 DEBUG Processing 92/864 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,274 DEBUG Processing 46/480 atomic regions from SNP 13505 to 14105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:14,335 DEBUG Processing 34/1030 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,342 DEBUG Processing 187/220 atomic regions from SNP 55917 to 56517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,394 DEBUG Processing 98/909 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,428 DEBUG Processing 21/1139 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,477 DEBUG Processing 93/864 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,480 DEBUG Processing 47/480 atomic regions from SNP 13805 to 14405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:14,568 DEBUG Processing 188/220 atomic regions from SNP 56217 to 56817 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,574 DEBUG Processing 35/1030 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,619 DEBUG Processing 99/909 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,677 DEBUG Processing 22/1139 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,683 DEBUG Processing 48/480 atomic regions from SNP 14105 to 14705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:14,712 DEBUG Processing 94/864 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,791 DEBUG Processing 189/220 atomic regions from SNP 56517 to 57117 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,813 DEBUG Processing 36/1030 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,840 DEBUG Processing 100/909 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,896 DEBUG Processing 49/480 atomic regions from SNP 14405 to 15005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:14,921 DEBUG Processing 23/1139 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,933 DEBUG Processing 95/864 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,013 DEBUG Processing 190/220 atomic regions from SNP 56817 to 57417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,053 DEBUG Processing 37/1030 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,064 DEBUG Processing 101/909 atomic regions from SNP 30100 to 30701 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,103 DEBUG Processing 50/480 atomic regions from SNP 14705 to 15305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:15,145 DEBUG Processing 96/864 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,168 DEBUG Processing 24/1139 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,231 DEBUG Processing 191/220 atomic regions from SNP 57117 to 57717 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,286 DEBUG Processing 102/909 atomic regions from SNP 30401 to 31002 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,292 DEBUG Processing 38/1030 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,313 DEBUG Processing 51/480 atomic regions from SNP 15005 to 15605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:15,356 DEBUG Processing 97/864 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,414 DEBUG Processing 25/1139 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,449 DEBUG Processing 192/220 atomic regions from SNP 57417 to 58017 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,510 DEBUG Processing 103/909 atomic regions from SNP 30702 to 31303 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,523 DEBUG Processing 52/480 atomic regions from SNP 15305 to 15905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:15,530 DEBUG Processing 39/1030 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,584 DEBUG Processing 98/864 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,662 DEBUG Processing 26/1139 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,666 DEBUG Processing 193/220 atomic regions from SNP 57717 to 58317 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,728 DEBUG Processing 104/909 atomic regions from SNP 31003 to 31604 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,732 DEBUG Processing 53/480 atomic regions from SNP 15605 to 16205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:15,769 DEBUG Processing 40/1030 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,816 DEBUG Processing 99/864 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,886 DEBUG Processing 194/220 atomic regions from SNP 58017 to 58617 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,907 DEBUG Processing 27/1139 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,939 DEBUG Processing 54/480 atomic regions from SNP 15905 to 16505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:15,950 DEBUG Processing 105/909 atomic regions from SNP 31304 to 31905 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,006 DEBUG Processing 41/1030 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,033 DEBUG Processing 100/864 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,107 DEBUG Processing 195/220 atomic regions from SNP 58317 to 58917 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,147 DEBUG Processing 55/480 atomic regions from SNP 16205 to 16805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:16,154 DEBUG Processing 28/1139 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,186 DEBUG Processing 106/909 atomic regions from SNP 31605 to 32206 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,242 DEBUG Processing 42/1030 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,243 DEBUG Processing 101/864 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,327 DEBUG Processing 196/220 atomic regions from SNP 58617 to 59217 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,356 DEBUG Processing 56/480 atomic regions from SNP 16505 to 17105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:16,401 DEBUG Processing 29/1139 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,419 DEBUG Processing 107/909 atomic regions from SNP 31906 to 32507 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,463 DEBUG Processing 102/864 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,480 DEBUG Processing 43/1030 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,551 DEBUG Processing 197/220 atomic regions from SNP 58917 to 59517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,564 DEBUG Processing 57/480 atomic regions from SNP 16805 to 17405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:16,644 DEBUG Processing 108/909 atomic regions from SNP 32207 to 32808 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,655 DEBUG Processing 30/1139 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,692 DEBUG Processing 103/864 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,721 DEBUG Processing 44/1030 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,769 DEBUG Processing 198/220 atomic regions from SNP 59217 to 59817 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,770 DEBUG Processing 58/480 atomic regions from SNP 17105 to 17705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:16,865 DEBUG Processing 109/909 atomic regions from SNP 32508 to 33109 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,905 DEBUG Processing 31/1139 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,907 DEBUG Processing 104/864 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,965 DEBUG Processing 45/1030 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,974 DEBUG Processing 59/480 atomic regions from SNP 17405 to 18005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:16,988 DEBUG Processing 199/220 atomic regions from SNP 59517 to 60117 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,088 DEBUG Processing 110/909 atomic regions from SNP 32809 to 33410 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,123 DEBUG Processing 105/864 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,160 DEBUG Processing 32/1139 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,182 DEBUG Processing 60/480 atomic regions from SNP 17705 to 18305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:17,202 DEBUG Processing 46/1030 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,206 DEBUG Processing 200/220 atomic regions from SNP 59817 to 60417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,308 DEBUG Processing 111/909 atomic regions from SNP 33110 to 33711 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,338 DEBUG Processing 106/864 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,393 DEBUG Processing 61/480 atomic regions from SNP 18005 to 18605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:17,410 DEBUG Processing 33/1139 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,422 DEBUG Processing 201/220 atomic regions from SNP 60117 to 60717 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,438 DEBUG Processing 47/1030 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,528 DEBUG Processing 112/909 atomic regions from SNP 33411 to 34012 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,552 DEBUG Processing 107/864 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,599 DEBUG Processing 62/480 atomic regions from SNP 18305 to 18905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:17,639 DEBUG Processing 202/220 atomic regions from SNP 60417 to 61017 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,659 DEBUG Processing 34/1139 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,674 DEBUG Processing 48/1030 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,747 DEBUG Processing 113/909 atomic regions from SNP 33712 to 34313 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,772 DEBUG Processing 108/864 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,809 DEBUG Processing 63/480 atomic regions from SNP 18605 to 19205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:17,856 DEBUG Processing 203/220 atomic regions from SNP 60717 to 61317 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,907 DEBUG Processing 35/1139 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,912 DEBUG Processing 49/1030 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,969 DEBUG Processing 114/909 atomic regions from SNP 34013 to 34614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,008 DEBUG Processing 109/864 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,015 DEBUG Processing 64/480 atomic regions from SNP 18905 to 19505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:18,072 DEBUG Processing 204/220 atomic regions from SNP 61017 to 61617 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,150 DEBUG Processing 50/1030 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,158 DEBUG Processing 36/1139 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,189 DEBUG Processing 115/909 atomic regions from SNP 34314 to 34915 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,231 DEBUG Processing 65/480 atomic regions from SNP 19205 to 19805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:18,242 DEBUG Processing 110/864 atomic regions from SNP 32809 to 33410 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,290 DEBUG Processing 205/220 atomic regions from SNP 61317 to 61917 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,396 DEBUG Processing 51/1030 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,406 DEBUG Processing 37/1139 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,413 DEBUG Processing 116/909 atomic regions from SNP 34615 to 35216 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,439 DEBUG Processing 66/480 atomic regions from SNP 19505 to 20105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:18,478 DEBUG Processing 111/864 atomic regions from SNP 33110 to 33711 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,506 DEBUG Processing 206/220 atomic regions from SNP 61617 to 62217 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,638 DEBUG Processing 117/909 atomic regions from SNP 34916 to 35517 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,650 DEBUG Processing 67/480 atomic regions from SNP 19805 to 20405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:18,655 DEBUG Processing 52/1030 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,665 DEBUG Processing 38/1139 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,698 DEBUG Processing 112/864 atomic regions from SNP 33411 to 34012 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,725 DEBUG Processing 207/220 atomic regions from SNP 61917 to 62517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,862 DEBUG Processing 118/909 atomic regions from SNP 35217 to 35818 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,863 DEBUG Processing 68/480 atomic regions from SNP 20105 to 20705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:18,902 DEBUG Processing 53/1030 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,914 DEBUG Processing 113/864 atomic regions from SNP 33712 to 34313 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,935 DEBUG Processing 39/1139 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,943 DEBUG Processing 208/220 atomic regions from SNP 62217 to 62817 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,073 DEBUG Processing 69/480 atomic regions from SNP 20405 to 21005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:19,083 DEBUG Processing 119/909 atomic regions from SNP 35518 to 36119 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,141 DEBUG Processing 54/1030 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,150 DEBUG Processing 114/864 atomic regions from SNP 34013 to 34614 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,160 DEBUG Processing 209/220 atomic regions from SNP 62517 to 63117 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,198 DEBUG Processing 40/1139 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,291 DEBUG Processing 70/480 atomic regions from SNP 20705 to 21305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:19,304 DEBUG Processing 120/909 atomic regions from SNP 35819 to 36420 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,378 DEBUG Processing 210/220 atomic regions from SNP 62817 to 63417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,378 DEBUG Processing 55/1030 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,394 DEBUG Processing 115/864 atomic regions from SNP 34314 to 34915 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,451 DEBUG Processing 41/1139 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,522 DEBUG Processing 71/480 atomic regions from SNP 21005 to 21605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:19,524 DEBUG Processing 121/909 atomic regions from SNP 36120 to 36721 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,595 DEBUG Processing 211/220 atomic regions from SNP 63117 to 63717 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,616 DEBUG Processing 56/1030 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,642 DEBUG Processing 116/864 atomic regions from SNP 34615 to 35216 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,700 DEBUG Processing 42/1139 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,743 DEBUG Processing 122/909 atomic regions from SNP 36421 to 37022 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,760 DEBUG Processing 72/480 atomic regions from SNP 21305 to 21905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:19,830 DEBUG Processing 212/220 atomic regions from SNP 63417 to 64017 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,854 DEBUG Processing 57/1030 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,891 DEBUG Processing 117/864 atomic regions from SNP 34916 to 35517 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,952 DEBUG Processing 43/1139 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,961 DEBUG Processing 123/909 atomic regions from SNP 36722 to 37323 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,004 DEBUG Processing 73/480 atomic regions from SNP 21605 to 22205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:20,082 DEBUG Processing 213/220 atomic regions from SNP 63717 to 64317 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,091 DEBUG Processing 58/1030 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,139 DEBUG Processing 118/864 atomic regions from SNP 35217 to 35818 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,183 DEBUG Processing 124/909 atomic regions from SNP 37023 to 37624 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,199 DEBUG Processing 44/1139 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,235 DEBUG Processing 74/480 atomic regions from SNP 21905 to 22505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:20,303 DEBUG Processing 214/220 atomic regions from SNP 64017 to 64617 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,329 DEBUG Processing 59/1030 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,375 DEBUG Processing 119/864 atomic regions from SNP 35518 to 36119 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,400 DEBUG Processing 125/909 atomic regions from SNP 37324 to 37925 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,445 DEBUG Processing 45/1139 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,454 DEBUG Processing 75/480 atomic regions from SNP 22205 to 22805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:20,543 DEBUG Processing 215/220 atomic regions from SNP 64317 to 64917 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,568 DEBUG Processing 60/1030 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,586 DEBUG Processing 120/864 atomic regions from SNP 35819 to 36420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,620 DEBUG Processing 126/909 atomic regions from SNP 37625 to 38226 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,662 DEBUG Processing 76/480 atomic regions from SNP 22505 to 23105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:20,691 DEBUG Processing 46/1139 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,795 DEBUG Processing 216/220 atomic regions from SNP 64617 to 65217 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,806 DEBUG Processing 61/1030 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,816 DEBUG Processing 121/864 atomic regions from SNP 36120 to 36721 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,839 DEBUG Processing 127/909 atomic regions from SNP 37926 to 38527 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,871 DEBUG Processing 77/480 atomic regions from SNP 22805 to 23405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:20,935 DEBUG Processing 47/1139 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,047 DEBUG Processing 62/1030 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,048 DEBUG Processing 217/220 atomic regions from SNP 64917 to 65517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,053 DEBUG Processing 122/864 atomic regions from SNP 36421 to 37022 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,061 DEBUG Processing 128/909 atomic regions from SNP 38227 to 38828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,082 DEBUG Processing 78/480 atomic regions from SNP 23105 to 23705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:21,179 DEBUG Processing 48/1139 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,265 DEBUG Processing 123/864 atomic regions from SNP 36722 to 37323 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,284 DEBUG Processing 129/909 atomic regions from SNP 38528 to 39129 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,289 DEBUG Processing 63/1030 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,294 DEBUG Processing 79/480 atomic regions from SNP 23405 to 24005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:21,295 DEBUG Processing 218/220 atomic regions from SNP 65217 to 65817 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,422 DEBUG Processing 49/1139 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,480 DEBUG Processing 124/864 atomic regions from SNP 37023 to 37624 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,509 DEBUG Processing 130/909 atomic regions from SNP 38829 to 39430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,516 DEBUG Processing 80/480 atomic regions from SNP 23705 to 24305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:21,532 DEBUG Processing 64/1030 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,538 DEBUG Processing 219/220 atomic regions from SNP 65517 to 66117 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,665 DEBUG Processing 50/1139 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,691 DEBUG Processing 125/864 atomic regions from SNP 37324 to 37925 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,731 DEBUG Processing 81/480 atomic regions from SNP 24005 to 24605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:21,733 DEBUG Processing 131/909 atomic regions from SNP 39130 to 39731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,774 DEBUG Processing 65/1030 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,784 DEBUG Processing 220/220 atomic regions from SNP 65817 to 66417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,901 DEBUG Processing 126/864 atomic regions from SNP 37625 to 38226 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,910 DEBUG Processing 51/1139 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,926 DEBUG Unique SNPs positions in subchromosome 1: 66418 2025-01-31 09:44:21,945 DEBUG Processing 82/480 atomic regions from SNP 24305 to 24905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:21,957 DEBUG Processing 132/909 atomic regions from SNP 39431 to 40032 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,014 DEBUG Processing 66/1030 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,111 DEBUG Processing 127/864 atomic regions from SNP 37926 to 38527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,154 DEBUG Subchromosome time: 56.75693606399, subchromosome SNPs: 66418 2025-01-31 09:44:22,156 DEBUG Processing 52/1139 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,157 DEBUG Processing 83/480 atomic regions from SNP 24605 to 25205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:22,179 DEBUG Processing 133/909 atomic regions from SNP 39732 to 40333 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,202 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:22,267 DEBUG Processing 67/1030 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,319 DEBUG Processing 128/864 atomic regions from SNP 38227 to 38828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,368 DEBUG Processing 84/480 atomic regions from SNP 24905 to 25505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:22,402 DEBUG Processing 134/909 atomic regions from SNP 40033 to 40634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,403 DEBUG Processing 53/1139 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,502 DEBUG Processing 68/1030 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,529 DEBUG Processing 129/864 atomic regions from SNP 38528 to 39129 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,598 DEBUG Processing 85/480 atomic regions from SNP 25205 to 25805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:22,626 DEBUG Processing 135/909 atomic regions from SNP 40334 to 40935 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,652 DEBUG Processing 54/1139 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,737 DEBUG Processing 69/1030 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,738 DEBUG Processing 130/864 atomic regions from SNP 38829 to 39430 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,820 DEBUG Processing 86/480 atomic regions from SNP 25505 to 26105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:22,848 DEBUG Processing 136/909 atomic regions from SNP 40635 to 41236 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,901 DEBUG Processing 55/1139 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,947 DEBUG Processing 131/864 atomic regions from SNP 39130 to 39731 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,970 DEBUG Processing 70/1030 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,038 DEBUG Processing 87/480 atomic regions from SNP 25805 to 26405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:23,074 DEBUG Processing 137/909 atomic regions from SNP 40936 to 41537 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,150 DEBUG Processing 56/1139 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,160 DEBUG Processing 132/864 atomic regions from SNP 39431 to 40032 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,206 DEBUG Processing 71/1030 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,266 DEBUG Processing 88/480 atomic regions from SNP 26105 to 26705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:23,295 DEBUG Processing 138/909 atomic regions from SNP 41237 to 41838 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,371 DEBUG Processing 133/864 atomic regions from SNP 39732 to 40333 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,395 DEBUG Processing 57/1139 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,442 DEBUG Processing 72/1030 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,477 DEBUG Processing 89/480 atomic regions from SNP 26405 to 27005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:23,513 DEBUG Processing 139/909 atomic regions from SNP 41538 to 42139 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,598 DEBUG Processing 134/864 atomic regions from SNP 40033 to 40634 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,641 DEBUG Processing 58/1139 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,678 DEBUG Processing 73/1030 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,685 DEBUG Processing 90/480 atomic regions from SNP 26705 to 27305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:23,734 DEBUG Processing 140/909 atomic regions from SNP 41839 to 42440 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,809 DEBUG Processing 135/864 atomic regions from SNP 40334 to 40935 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,894 DEBUG Processing 91/480 atomic regions from SNP 27005 to 27605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:23,902 DEBUG Processing 59/1139 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,917 DEBUG Processing 74/1030 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,954 DEBUG Processing 141/909 atomic regions from SNP 42140 to 42741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,044 DEBUG Processing 136/864 atomic regions from SNP 40635 to 41236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,104 DEBUG Processing 92/480 atomic regions from SNP 27305 to 27905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:24,158 DEBUG Processing 75/1030 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,168 DEBUG Processing 60/1139 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,174 DEBUG Processing 142/909 atomic regions from SNP 42441 to 43042 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,264 DEBUG Processing 137/864 atomic regions from SNP 40936 to 41537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,316 DEBUG Processing 93/480 atomic regions from SNP 27605 to 28205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:24,395 DEBUG Processing 143/909 atomic regions from SNP 42742 to 43343 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,396 DEBUG Processing 76/1030 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,434 DEBUG Processing 61/1139 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,472 DEBUG Processing 138/864 atomic regions from SNP 41237 to 41838 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,535 DEBUG Processing 94/480 atomic regions from SNP 27905 to 28505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:24,622 DEBUG Processing 144/909 atomic regions from SNP 43043 to 43644 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,635 DEBUG Processing 77/1030 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,680 DEBUG Processing 139/864 atomic regions from SNP 41538 to 42139 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,683 DEBUG Processing 62/1139 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,753 DEBUG Processing 95/480 atomic regions from SNP 28205 to 28805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:24,864 DEBUG Processing 145/909 atomic regions from SNP 43344 to 43945 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,878 DEBUG Processing 78/1030 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,895 DEBUG Processing 140/864 atomic regions from SNP 41839 to 42440 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,932 DEBUG Processing 63/1139 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,959 DEBUG Processing 96/480 atomic regions from SNP 28505 to 29105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:25,093 DEBUG Processing 146/909 atomic regions from SNP 43645 to 44246 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,113 DEBUG Processing 141/864 atomic regions from SNP 42140 to 42741 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,122 DEBUG Processing 79/1030 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,168 DEBUG Processing 97/480 atomic regions from SNP 28805 to 29405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:25,182 DEBUG Processing 64/1139 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,312 DEBUG Processing 147/909 atomic regions from SNP 43946 to 44547 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,327 DEBUG Processing 142/864 atomic regions from SNP 42441 to 43042 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,363 DEBUG Processing 80/1030 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,380 DEBUG Processing 98/480 atomic regions from SNP 29105 to 29705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:25,428 DEBUG Processing 65/1139 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,529 DEBUG Processing 148/909 atomic regions from SNP 44247 to 44848 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,538 DEBUG Processing 143/864 atomic regions from SNP 42742 to 43343 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,599 DEBUG Processing 81/1030 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,606 DEBUG Processing 99/480 atomic regions from SNP 29405 to 30005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:25,674 DEBUG Processing 66/1139 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,748 DEBUG Processing 149/909 atomic regions from SNP 44548 to 45149 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,752 DEBUG Processing 144/864 atomic regions from SNP 43043 to 43644 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,835 DEBUG Processing 100/480 atomic regions from SNP 29705 to 30305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:25,836 DEBUG Processing 82/1030 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,921 DEBUG Processing 67/1139 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,966 DEBUG Processing 150/909 atomic regions from SNP 44849 to 45450 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,969 DEBUG Processing 145/864 atomic regions from SNP 43344 to 43945 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,058 DEBUG Processing 101/480 atomic regions from SNP 30005 to 30605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:26,072 DEBUG Processing 83/1030 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,167 DEBUG Processing 68/1139 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,180 DEBUG Processing 146/864 atomic regions from SNP 43645 to 44246 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,184 DEBUG Processing 151/909 atomic regions from SNP 45150 to 45751 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,280 DEBUG Processing 102/480 atomic regions from SNP 30305 to 30905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:26,308 DEBUG Processing 84/1030 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,391 DEBUG Processing 147/864 atomic regions from SNP 43946 to 44547 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,403 DEBUG Processing 152/909 atomic regions from SNP 45451 to 46052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,414 DEBUG Processing 69/1139 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,494 DEBUG Processing 103/480 atomic regions from SNP 30605 to 31205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:26,543 DEBUG Processing 85/1030 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,608 DEBUG Processing 148/864 atomic regions from SNP 44247 to 44848 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,623 DEBUG Processing 153/909 atomic regions from SNP 45752 to 46353 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,660 DEBUG Processing 70/1139 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,699 DEBUG Processing 104/480 atomic regions from SNP 30905 to 31505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:26,787 DEBUG Processing 86/1030 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,842 DEBUG Processing 149/864 atomic regions from SNP 44548 to 45149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,844 DEBUG Processing 154/909 atomic regions from SNP 46053 to 46654 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,906 DEBUG Processing 105/480 atomic regions from SNP 31205 to 31805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:26,908 DEBUG Processing 71/1139 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,022 DEBUG Processing 87/1030 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,076 DEBUG Processing 150/864 atomic regions from SNP 44849 to 45450 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,083 DEBUG Processing 155/909 atomic regions from SNP 46354 to 46955 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,116 DEBUG Processing 106/480 atomic regions from SNP 31505 to 32105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:27,156 DEBUG Processing 72/1139 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,257 DEBUG Processing 88/1030 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,320 DEBUG Processing 151/864 atomic regions from SNP 45150 to 45751 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,328 DEBUG Processing 156/909 atomic regions from SNP 46655 to 47256 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,329 DEBUG Processing 107/480 atomic regions from SNP 31805 to 32405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:27,404 DEBUG Processing 73/1139 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,506 DEBUG Processing 89/1030 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,541 DEBUG Processing 108/480 atomic regions from SNP 32105 to 32705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:27,562 DEBUG Processing 152/864 atomic regions from SNP 45451 to 46052 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,566 DEBUG Processing 157/909 atomic regions from SNP 46956 to 47557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,647 DEBUG Processing 74/1139 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,753 DEBUG Processing 109/480 atomic regions from SNP 32405 to 33005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:27,769 DEBUG Processing 90/1030 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,812 DEBUG Processing 153/864 atomic regions from SNP 45752 to 46353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,820 DEBUG Processing 158/909 atomic regions from SNP 47257 to 47858 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,888 DEBUG Processing 75/1139 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,965 DEBUG Processing 110/480 atomic regions from SNP 32705 to 33305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:28,010 DEBUG Processing 91/1030 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,058 DEBUG Processing 154/864 atomic regions from SNP 46053 to 46654 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,064 DEBUG Processing 159/909 atomic regions from SNP 47558 to 48159 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,144 DEBUG Processing 76/1139 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,194 DEBUG Processing 111/480 atomic regions from SNP 33005 to 33605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:28,249 DEBUG Processing 92/1030 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,284 DEBUG Processing 160/909 atomic regions from SNP 47859 to 48460 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,294 DEBUG Processing 155/864 atomic regions from SNP 46354 to 46955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,388 DEBUG Processing 77/1139 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,420 DEBUG Processing 112/480 atomic regions from SNP 33305 to 33905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:28,501 DEBUG Processing 161/909 atomic regions from SNP 48160 to 48761 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,507 DEBUG Processing 93/1030 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,508 DEBUG Processing 156/864 atomic regions from SNP 46655 to 47256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,634 DEBUG Processing 78/1139 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,643 DEBUG Processing 113/480 atomic regions from SNP 33605 to 34205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:28,721 DEBUG Processing 162/909 atomic regions from SNP 48461 to 49062 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,730 DEBUG Processing 157/864 atomic regions from SNP 46956 to 47557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,764 DEBUG Processing 94/1030 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,852 DEBUG Processing 114/480 atomic regions from SNP 33905 to 34505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:28,882 DEBUG Processing 79/1139 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,938 DEBUG Processing 163/909 atomic regions from SNP 48762 to 49363 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,938 DEBUG Processing 158/864 atomic regions from SNP 47257 to 47858 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,025 DEBUG Processing 95/1030 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,066 DEBUG Processing 115/480 atomic regions from SNP 34205 to 34805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:29,126 DEBUG Processing 80/1139 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,149 DEBUG Processing 159/864 atomic regions from SNP 47558 to 48159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,157 DEBUG Processing 164/909 atomic regions from SNP 49063 to 49664 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,273 DEBUG Processing 96/1030 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,279 DEBUG Processing 116/480 atomic regions from SNP 34505 to 35105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:29,371 DEBUG Processing 81/1139 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,375 DEBUG Processing 165/909 atomic regions from SNP 49364 to 49965 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,378 DEBUG Processing 160/864 atomic regions from SNP 47859 to 48460 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,499 DEBUG Processing 117/480 atomic regions from SNP 34805 to 35405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:29,512 DEBUG Processing 97/1030 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,607 DEBUG Processing 161/864 atomic regions from SNP 48160 to 48761 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,607 DEBUG Processing 166/909 atomic regions from SNP 49665 to 50266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,617 DEBUG Processing 82/1139 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,704 DEBUG Processing 118/480 atomic regions from SNP 35105 to 35705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:29,750 DEBUG Processing 98/1030 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,821 DEBUG Processing 162/864 atomic regions from SNP 48461 to 49062 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,841 DEBUG Processing 167/909 atomic regions from SNP 49966 to 50567 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,865 DEBUG Processing 83/1139 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,910 DEBUG Processing 119/480 atomic regions from SNP 35405 to 36005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:29,986 DEBUG Processing 99/1030 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,032 DEBUG Processing 163/864 atomic regions from SNP 48762 to 49363 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,088 DEBUG Processing 168/909 atomic regions from SNP 50267 to 50868 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,114 DEBUG Processing 84/1139 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,117 DEBUG Processing 120/480 atomic regions from SNP 35705 to 36305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:30,222 DEBUG Processing 100/1030 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,264 DEBUG Processing 164/864 atomic regions from SNP 49063 to 49664 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,307 DEBUG Processing 169/909 atomic regions from SNP 50568 to 51169 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,326 DEBUG Processing 121/480 atomic regions from SNP 36005 to 36605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:30,362 DEBUG Processing 85/1139 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,458 DEBUG Processing 101/1030 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,500 DEBUG Processing 165/864 atomic regions from SNP 49364 to 49965 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,527 DEBUG Processing 170/909 atomic regions from SNP 50869 to 51470 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,532 DEBUG Processing 122/480 atomic regions from SNP 36305 to 36905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:30,605 DEBUG Processing 86/1139 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,696 DEBUG Processing 102/1030 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,735 DEBUG Processing 166/864 atomic regions from SNP 49665 to 50266 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,738 DEBUG Processing 123/480 atomic regions from SNP 36605 to 37205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:30,752 DEBUG Processing 171/909 atomic regions from SNP 51170 to 51771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,847 DEBUG Processing 87/1139 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,935 DEBUG Processing 103/1030 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,947 DEBUG Processing 124/480 atomic regions from SNP 36905 to 37505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:30,968 DEBUG Processing 167/864 atomic regions from SNP 49966 to 50567 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,973 DEBUG Processing 172/909 atomic regions from SNP 51471 to 52072 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,092 DEBUG Processing 88/1139 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,156 DEBUG Processing 125/480 atomic regions from SNP 37205 to 37805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:31,173 DEBUG Processing 104/1030 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,196 DEBUG Processing 173/909 atomic regions from SNP 51772 to 52373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,208 DEBUG Processing 168/864 atomic regions from SNP 50267 to 50868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,338 DEBUG Processing 89/1139 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,364 DEBUG Processing 126/480 atomic regions from SNP 37505 to 38105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:31,412 DEBUG Processing 105/1030 atomic regions from SNP 31304 to 31905 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,427 DEBUG Processing 174/909 atomic regions from SNP 52073 to 52674 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,452 DEBUG Processing 169/864 atomic regions from SNP 50568 to 51168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,572 DEBUG Processing 127/480 atomic regions from SNP 37805 to 38405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:31,589 DEBUG Processing 90/1139 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,655 DEBUG Processing 106/1030 atomic regions from SNP 31605 to 32206 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,660 DEBUG Processing 175/909 atomic regions from SNP 52374 to 52975 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,695 DEBUG Processing 170/864 atomic regions from SNP 50868 to 51468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,779 DEBUG Processing 128/480 atomic regions from SNP 38105 to 38705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:31,836 DEBUG Processing 91/1139 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,881 DEBUG Processing 176/909 atomic regions from SNP 52675 to 53276 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,915 DEBUG Processing 107/1030 atomic regions from SNP 31906 to 32507 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,925 DEBUG Processing 171/864 atomic regions from SNP 51168 to 51768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,984 DEBUG Processing 129/480 atomic regions from SNP 38405 to 39005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:32,081 DEBUG Processing 92/1139 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,105 DEBUG Processing 177/909 atomic regions from SNP 52976 to 53577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,140 DEBUG Processing 172/864 atomic regions from SNP 51468 to 52068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,158 DEBUG Processing 108/1030 atomic regions from SNP 32207 to 32808 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,190 DEBUG Processing 130/480 atomic regions from SNP 38705 to 39305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:32,325 DEBUG Processing 93/1139 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,326 DEBUG Processing 178/909 atomic regions from SNP 53277 to 53878 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,375 DEBUG Processing 173/864 atomic regions from SNP 51768 to 52368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,398 DEBUG Processing 109/1030 atomic regions from SNP 32508 to 33109 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,399 DEBUG Processing 131/480 atomic regions from SNP 39005 to 39605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:32,550 DEBUG Processing 179/909 atomic regions from SNP 53578 to 54179 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,573 DEBUG Processing 94/1139 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,610 DEBUG Processing 132/480 atomic regions from SNP 39305 to 39905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:32,612 DEBUG Processing 174/864 atomic regions from SNP 52068 to 52668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,638 DEBUG Processing 110/1030 atomic regions from SNP 32809 to 33410 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,772 DEBUG Processing 180/909 atomic regions from SNP 53879 to 54480 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,822 DEBUG Processing 95/1139 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,825 DEBUG Processing 133/480 atomic regions from SNP 39605 to 40205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:32,858 DEBUG Processing 175/864 atomic regions from SNP 52368 to 52968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,880 DEBUG Processing 111/1030 atomic regions from SNP 33110 to 33711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,993 DEBUG Processing 181/909 atomic regions from SNP 54180 to 54781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,036 DEBUG Processing 134/480 atomic regions from SNP 39905 to 40505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:33,072 DEBUG Processing 96/1139 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,103 DEBUG Processing 176/864 atomic regions from SNP 52668 to 53268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,118 DEBUG Processing 112/1030 atomic regions from SNP 33411 to 34012 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,214 DEBUG Processing 182/909 atomic regions from SNP 54481 to 55082 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,246 DEBUG Processing 135/480 atomic regions from SNP 40205 to 40805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:33,323 DEBUG Processing 97/1139 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,326 DEBUG Processing 177/864 atomic regions from SNP 52968 to 53568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,357 DEBUG Processing 113/1030 atomic regions from SNP 33712 to 34313 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,434 DEBUG Processing 183/909 atomic regions from SNP 54782 to 55383 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,451 DEBUG Processing 136/480 atomic regions from SNP 40505 to 41105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:33,572 DEBUG Processing 98/1139 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,572 DEBUG Processing 178/864 atomic regions from SNP 53268 to 53868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,594 DEBUG Processing 114/1030 atomic regions from SNP 34013 to 34614 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,653 DEBUG Processing 184/909 atomic regions from SNP 55083 to 55684 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,655 DEBUG Processing 137/480 atomic regions from SNP 40805 to 41405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:33,818 DEBUG Processing 179/864 atomic regions from SNP 53568 to 54168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,821 DEBUG Processing 99/1139 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,833 DEBUG Processing 115/1030 atomic regions from SNP 34314 to 34915 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,861 DEBUG Processing 138/480 atomic regions from SNP 41105 to 41705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:33,875 DEBUG Processing 185/909 atomic regions from SNP 55384 to 55985 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,052 DEBUG Processing 180/864 atomic regions from SNP 53868 to 54468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,072 DEBUG Processing 100/1139 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,072 DEBUG Processing 139/480 atomic regions from SNP 41405 to 42005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:34,078 DEBUG Processing 116/1030 atomic regions from SNP 34615 to 35216 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,103 DEBUG Processing 186/909 atomic regions from SNP 55685 to 56286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,287 DEBUG Processing 181/864 atomic regions from SNP 54168 to 54768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,287 DEBUG Processing 140/480 atomic regions from SNP 41705 to 42305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:34,323 DEBUG Processing 117/1030 atomic regions from SNP 34916 to 35517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,324 DEBUG Processing 101/1139 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,348 DEBUG Processing 187/909 atomic regions from SNP 55986 to 56587 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,498 DEBUG Processing 141/480 atomic regions from SNP 42005 to 42605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:34,525 DEBUG Processing 182/864 atomic regions from SNP 54468 to 55068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,575 DEBUG Processing 102/1139 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,577 DEBUG Processing 188/909 atomic regions from SNP 56287 to 56888 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,581 DEBUG Processing 118/1030 atomic regions from SNP 35217 to 35818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,706 DEBUG Processing 142/480 atomic regions from SNP 42305 to 42905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:34,740 DEBUG Processing 183/864 atomic regions from SNP 54768 to 55368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,805 DEBUG Processing 189/909 atomic regions from SNP 56588 to 57189 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,822 DEBUG Processing 119/1030 atomic regions from SNP 35518 to 36119 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,824 DEBUG Processing 103/1139 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,911 DEBUG Processing 143/480 atomic regions from SNP 42605 to 43205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:34,951 DEBUG Processing 184/864 atomic regions from SNP 55068 to 55668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,027 DEBUG Processing 190/909 atomic regions from SNP 56889 to 57490 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,061 DEBUG Processing 120/1030 atomic regions from SNP 35819 to 36420 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,071 DEBUG Processing 104/1139 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,115 DEBUG Processing 144/480 atomic regions from SNP 42905 to 43505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:35,163 DEBUG Processing 185/864 atomic regions from SNP 55368 to 55968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,250 DEBUG Processing 191/909 atomic regions from SNP 57190 to 57791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,300 DEBUG Processing 121/1030 atomic regions from SNP 36120 to 36721 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,320 DEBUG Processing 105/1139 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,321 DEBUG Processing 145/480 atomic regions from SNP 43205 to 43805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:35,374 DEBUG Processing 186/864 atomic regions from SNP 55668 to 56268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,472 DEBUG Processing 192/909 atomic regions from SNP 57491 to 58092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,530 DEBUG Processing 146/480 atomic regions from SNP 43505 to 44105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:35,539 DEBUG Processing 122/1030 atomic regions from SNP 36421 to 37022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,568 DEBUG Processing 106/1139 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,603 DEBUG Processing 187/864 atomic regions from SNP 55968 to 56568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,694 DEBUG Processing 193/909 atomic regions from SNP 57792 to 58393 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,739 DEBUG Processing 147/480 atomic regions from SNP 43805 to 44405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:35,778 DEBUG Processing 123/1030 atomic regions from SNP 36722 to 37323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,816 DEBUG Processing 107/1139 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,848 DEBUG Processing 188/864 atomic regions from SNP 56268 to 56868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,918 DEBUG Processing 194/909 atomic regions from SNP 58093 to 58694 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,949 DEBUG Processing 148/480 atomic regions from SNP 44105 to 44705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:36,016 DEBUG Processing 124/1030 atomic regions from SNP 37023 to 37624 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,063 DEBUG Processing 108/1139 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,096 DEBUG Processing 189/864 atomic regions from SNP 56568 to 57168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,140 DEBUG Processing 195/909 atomic regions from SNP 58394 to 58995 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,153 DEBUG Processing 149/480 atomic regions from SNP 44405 to 45005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:36,253 DEBUG Processing 125/1030 atomic regions from SNP 37324 to 37925 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,311 DEBUG Processing 109/1139 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,326 DEBUG Processing 190/864 atomic regions from SNP 56868 to 57468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,359 DEBUG Processing 150/480 atomic regions from SNP 44705 to 45305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:36,360 DEBUG Processing 196/909 atomic regions from SNP 58695 to 59296 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,490 DEBUG Processing 126/1030 atomic regions from SNP 37625 to 38226 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,540 DEBUG Processing 191/864 atomic regions from SNP 57168 to 57768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,559 DEBUG Processing 110/1139 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,566 DEBUG Processing 151/480 atomic regions from SNP 45005 to 45605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:36,580 DEBUG Processing 197/909 atomic regions from SNP 58996 to 59597 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,744 DEBUG Processing 127/1030 atomic regions from SNP 37926 to 38527 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,755 DEBUG Processing 192/864 atomic regions from SNP 57468 to 58068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,774 DEBUG Processing 152/480 atomic regions from SNP 45305 to 45905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:36,804 DEBUG Processing 198/909 atomic regions from SNP 59297 to 59898 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,806 DEBUG Processing 111/1139 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,970 DEBUG Processing 193/864 atomic regions from SNP 57768 to 58368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,983 DEBUG Processing 153/480 atomic regions from SNP 45605 to 46205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:36,993 DEBUG Processing 128/1030 atomic regions from SNP 38227 to 38828 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,030 DEBUG Processing 199/909 atomic regions from SNP 59598 to 60199 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,053 DEBUG Processing 112/1139 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,184 DEBUG Processing 194/864 atomic regions from SNP 58068 to 58668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,192 DEBUG Processing 154/480 atomic regions from SNP 45905 to 46505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:37,251 DEBUG Processing 200/909 atomic regions from SNP 59899 to 60500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,262 DEBUG Processing 129/1030 atomic regions from SNP 38528 to 39129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,299 DEBUG Processing 113/1139 atomic regions from SNP 33712 to 34313 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,395 DEBUG Processing 195/864 atomic regions from SNP 58368 to 58968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,399 DEBUG Processing 155/480 atomic regions from SNP 46205 to 46805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:37,475 DEBUG Processing 201/909 atomic regions from SNP 60200 to 60801 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,535 DEBUG Processing 130/1030 atomic regions from SNP 38829 to 39430 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,544 DEBUG Processing 114/1139 atomic regions from SNP 34013 to 34614 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,606 DEBUG Processing 156/480 atomic regions from SNP 46505 to 47105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:37,607 DEBUG Processing 196/864 atomic regions from SNP 58668 to 59268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,696 DEBUG Processing 202/909 atomic regions from SNP 60501 to 61102 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,791 DEBUG Processing 115/1139 atomic regions from SNP 34314 to 34915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,806 DEBUG Processing 131/1030 atomic regions from SNP 39130 to 39731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,814 DEBUG Processing 157/480 atomic regions from SNP 46805 to 47405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:37,820 DEBUG Processing 197/864 atomic regions from SNP 58968 to 59568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,917 DEBUG Processing 203/909 atomic regions from SNP 60802 to 61403 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,023 DEBUG Processing 158/480 atomic regions from SNP 47105 to 47705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:38,039 DEBUG Processing 116/1139 atomic regions from SNP 34615 to 35216 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,041 DEBUG Processing 198/864 atomic regions from SNP 59268 to 59868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,084 DEBUG Processing 132/1030 atomic regions from SNP 39431 to 40031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,141 DEBUG Processing 204/909 atomic regions from SNP 61103 to 61704 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,230 DEBUG Processing 159/480 atomic regions from SNP 47405 to 48005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:38,263 DEBUG Processing 199/864 atomic regions from SNP 59568 to 60168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,292 DEBUG Processing 117/1139 atomic regions from SNP 34916 to 35517 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,358 DEBUG Processing 133/1030 atomic regions from SNP 39731 to 40331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,361 DEBUG Processing 205/909 atomic regions from SNP 61404 to 62005 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,436 DEBUG Processing 160/480 atomic regions from SNP 47705 to 48305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:38,499 DEBUG Processing 200/864 atomic regions from SNP 59868 to 60468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,537 DEBUG Processing 118/1139 atomic regions from SNP 35217 to 35818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,585 DEBUG Processing 206/909 atomic regions from SNP 61705 to 62306 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,622 DEBUG Processing 134/1030 atomic regions from SNP 40031 to 40631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,642 DEBUG Processing 161/480 atomic regions from SNP 48005 to 48605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:38,716 DEBUG Processing 201/864 atomic regions from SNP 60168 to 60768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,784 DEBUG Processing 119/1139 atomic regions from SNP 35518 to 36119 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,809 DEBUG Processing 207/909 atomic regions from SNP 62006 to 62607 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,849 DEBUG Processing 162/480 atomic regions from SNP 48305 to 48905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:38,885 DEBUG Processing 135/1030 atomic regions from SNP 40331 to 40931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,928 DEBUG Processing 202/864 atomic regions from SNP 60468 to 61068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,031 DEBUG Processing 120/1139 atomic regions from SNP 35819 to 36420 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,031 DEBUG Processing 208/909 atomic regions from SNP 62307 to 62908 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,056 DEBUG Processing 163/480 atomic regions from SNP 48605 to 49205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:39,138 DEBUG Processing 203/864 atomic regions from SNP 60768 to 61368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,157 DEBUG Processing 136/1030 atomic regions from SNP 40631 to 41231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,257 DEBUG Processing 209/909 atomic regions from SNP 62608 to 63209 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,264 DEBUG Processing 164/480 atomic regions from SNP 48905 to 49505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:39,278 DEBUG Processing 121/1139 atomic regions from SNP 36120 to 36721 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,350 DEBUG Processing 204/864 atomic regions from SNP 61068 to 61668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,429 DEBUG Processing 137/1030 atomic regions from SNP 40931 to 41531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,473 DEBUG Processing 165/480 atomic regions from SNP 49205 to 49805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:39,483 DEBUG Processing 210/909 atomic regions from SNP 62909 to 63510 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,526 DEBUG Processing 122/1139 atomic regions from SNP 36421 to 37022 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,561 DEBUG Processing 205/864 atomic regions from SNP 61368 to 61968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,680 DEBUG Processing 166/480 atomic regions from SNP 49505 to 50105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:39,704 DEBUG Processing 138/1030 atomic regions from SNP 41231 to 41831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,707 DEBUG Processing 211/909 atomic regions from SNP 63210 to 63811 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,773 DEBUG Processing 206/864 atomic regions from SNP 61668 to 62268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,774 DEBUG Processing 123/1139 atomic regions from SNP 36722 to 37323 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,885 DEBUG Processing 167/480 atomic regions from SNP 49805 to 50405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:39,927 DEBUG Processing 212/909 atomic regions from SNP 63511 to 64112 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,980 DEBUG Processing 139/1030 atomic regions from SNP 41531 to 42131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,986 DEBUG Processing 207/864 atomic regions from SNP 61968 to 62568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,021 DEBUG Processing 124/1139 atomic regions from SNP 37023 to 37624 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,088 DEBUG Processing 168/480 atomic regions from SNP 50105 to 50705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:40,150 DEBUG Processing 213/909 atomic regions from SNP 63812 to 64413 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,200 DEBUG Processing 208/864 atomic regions from SNP 62268 to 62868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,253 DEBUG Processing 140/1030 atomic regions from SNP 41831 to 42431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,268 DEBUG Processing 125/1139 atomic regions from SNP 37324 to 37925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,293 DEBUG Processing 169/480 atomic regions from SNP 50405 to 51005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:40,373 DEBUG Processing 214/909 atomic regions from SNP 64113 to 64714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,414 DEBUG Processing 209/864 atomic regions from SNP 62568 to 63168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,502 DEBUG Processing 170/480 atomic regions from SNP 50705 to 51305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:40,517 DEBUG Processing 126/1139 atomic regions from SNP 37625 to 38226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,517 DEBUG Processing 141/1030 atomic regions from SNP 42131 to 42731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,592 DEBUG Processing 215/909 atomic regions from SNP 64414 to 65015 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,631 DEBUG Processing 210/864 atomic regions from SNP 62868 to 63468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,712 DEBUG Processing 171/480 atomic regions from SNP 51005 to 51605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:40,764 DEBUG Processing 127/1139 atomic regions from SNP 37926 to 38527 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,792 DEBUG Processing 142/1030 atomic regions from SNP 42431 to 43031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,812 DEBUG Processing 216/909 atomic regions from SNP 64715 to 65316 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,848 DEBUG Processing 211/864 atomic regions from SNP 63168 to 63768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,919 DEBUG Processing 172/480 atomic regions from SNP 51305 to 51905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:41,010 DEBUG Processing 128/1139 atomic regions from SNP 38227 to 38828 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,032 DEBUG Processing 217/909 atomic regions from SNP 65016 to 65617 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,060 DEBUG Processing 143/1030 atomic regions from SNP 42731 to 43331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,062 DEBUG Processing 212/864 atomic regions from SNP 63468 to 64068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,124 DEBUG Processing 173/480 atomic regions from SNP 51605 to 52205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:41,256 DEBUG Processing 218/909 atomic regions from SNP 65317 to 65918 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,256 DEBUG Processing 129/1139 atomic regions from SNP 38528 to 39129 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,280 DEBUG Processing 213/864 atomic regions from SNP 63768 to 64368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,329 DEBUG Processing 174/480 atomic regions from SNP 51905 to 52505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:41,331 DEBUG Processing 144/1030 atomic regions from SNP 43031 to 43631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,484 DEBUG Processing 219/909 atomic regions from SNP 65618 to 66219 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,496 DEBUG Processing 214/864 atomic regions from SNP 64068 to 64668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,509 DEBUG Processing 130/1139 atomic regions from SNP 38829 to 39430 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,537 DEBUG Processing 175/480 atomic regions from SNP 52205 to 52805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:41,611 DEBUG Processing 145/1030 atomic regions from SNP 43331 to 43931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,706 DEBUG Processing 220/909 atomic regions from SNP 65919 to 66520 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,712 DEBUG Processing 215/864 atomic regions from SNP 64368 to 64968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,745 DEBUG Processing 176/480 atomic regions from SNP 52505 to 53105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:41,759 DEBUG Processing 131/1139 atomic regions from SNP 39130 to 39731 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,880 DEBUG Processing 146/1030 atomic regions from SNP 43631 to 44231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,927 DEBUG Processing 216/864 atomic regions from SNP 64668 to 65268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,932 DEBUG Processing 221/909 atomic regions from SNP 66220 to 66821 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,954 DEBUG Processing 177/480 atomic regions from SNP 52805 to 53405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:42,007 DEBUG Processing 132/1139 atomic regions from SNP 39431 to 40032 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,143 DEBUG Processing 217/864 atomic regions from SNP 64968 to 65568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,149 DEBUG Processing 147/1030 atomic regions from SNP 43931 to 44531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,157 DEBUG Processing 222/909 atomic regions from SNP 66521 to 67122 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,165 DEBUG Processing 178/480 atomic regions from SNP 53105 to 53705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:42,255 DEBUG Processing 133/1139 atomic regions from SNP 39732 to 40333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,359 DEBUG Processing 218/864 atomic regions from SNP 65268 to 65868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,378 DEBUG Processing 179/480 atomic regions from SNP 53405 to 54005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:42,385 DEBUG Processing 223/909 atomic regions from SNP 66822 to 67423 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,419 DEBUG Processing 148/1030 atomic regions from SNP 44231 to 44831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,500 DEBUG Processing 134/1139 atomic regions from SNP 40033 to 40634 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,571 DEBUG Processing 219/864 atomic regions from SNP 65568 to 66168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,588 DEBUG Processing 180/480 atomic regions from SNP 53705 to 54305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:42,611 DEBUG Processing 224/909 atomic regions from SNP 67123 to 67724 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,687 DEBUG Processing 149/1030 atomic regions from SNP 44531 to 45131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,745 DEBUG Processing 135/1139 atomic regions from SNP 40334 to 40935 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,785 DEBUG Processing 220/864 atomic regions from SNP 65868 to 66468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,796 DEBUG Processing 181/480 atomic regions from SNP 54005 to 54605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:42,834 DEBUG Processing 225/909 atomic regions from SNP 67424 to 68025 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,951 DEBUG Processing 150/1030 atomic regions from SNP 44831 to 45431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,993 DEBUG Processing 136/1139 atomic regions from SNP 40635 to 41236 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,001 DEBUG Processing 221/864 atomic regions from SNP 66168 to 66768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,003 DEBUG Processing 182/480 atomic regions from SNP 54305 to 54905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:43,055 DEBUG Processing 226/909 atomic regions from SNP 67725 to 68326 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,215 DEBUG Processing 183/480 atomic regions from SNP 54605 to 55205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:43,219 DEBUG Processing 222/864 atomic regions from SNP 66468 to 67068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,220 DEBUG Processing 151/1030 atomic regions from SNP 45131 to 45731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,243 DEBUG Processing 137/1139 atomic regions from SNP 40936 to 41537 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,276 DEBUG Processing 227/909 atomic regions from SNP 68026 to 68627 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,426 DEBUG Processing 184/480 atomic regions from SNP 54905 to 55505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:43,435 DEBUG Processing 223/864 atomic regions from SNP 66768 to 67368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,493 DEBUG Processing 138/1139 atomic regions from SNP 41237 to 41838 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,497 DEBUG Processing 228/909 atomic regions from SNP 68327 to 68928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,499 DEBUG Processing 152/1030 atomic regions from SNP 45431 to 46031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,636 DEBUG Processing 185/480 atomic regions from SNP 55205 to 55805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:43,651 DEBUG Processing 224/864 atomic regions from SNP 67068 to 67668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,719 DEBUG Processing 229/909 atomic regions from SNP 68628 to 69229 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,740 DEBUG Processing 139/1139 atomic regions from SNP 41538 to 42139 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,772 DEBUG Processing 153/1030 atomic regions from SNP 45731 to 46331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,841 DEBUG Processing 186/480 atomic regions from SNP 55505 to 56105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:43,863 DEBUG Processing 225/864 atomic regions from SNP 67368 to 67968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,940 DEBUG Processing 230/909 atomic regions from SNP 68929 to 69530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,986 DEBUG Processing 140/1139 atomic regions from SNP 41839 to 42440 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,036 DEBUG Processing 154/1030 atomic regions from SNP 46031 to 46631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,048 DEBUG Processing 187/480 atomic regions from SNP 55805 to 56405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:44,076 DEBUG Processing 226/864 atomic regions from SNP 67668 to 68268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,160 DEBUG Processing 231/909 atomic regions from SNP 69230 to 69831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,233 DEBUG Processing 141/1139 atomic regions from SNP 42140 to 42741 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,256 DEBUG Processing 188/480 atomic regions from SNP 56105 to 56705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:44,290 DEBUG Processing 227/864 atomic regions from SNP 67968 to 68568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,303 DEBUG Processing 155/1030 atomic regions from SNP 46331 to 46931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,379 DEBUG Processing 232/909 atomic regions from SNP 69531 to 70132 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,465 DEBUG Processing 189/480 atomic regions from SNP 56405 to 57005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:44,480 DEBUG Processing 142/1139 atomic regions from SNP 42441 to 43042 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,507 DEBUG Processing 228/864 atomic regions from SNP 68268 to 68868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,571 DEBUG Processing 156/1030 atomic regions from SNP 46631 to 47231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,598 DEBUG Processing 233/909 atomic regions from SNP 69832 to 70433 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,683 DEBUG Processing 190/480 atomic regions from SNP 56705 to 57305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:44,722 DEBUG Processing 229/864 atomic regions from SNP 68568 to 69168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,729 DEBUG Processing 143/1139 atomic regions from SNP 42742 to 43343 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,814 DEBUG Processing 234/909 atomic regions from SNP 70133 to 70734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,828 DEBUG Processing 157/1030 atomic regions from SNP 46931 to 47531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,886 DEBUG Processing 191/480 atomic regions from SNP 57005 to 57605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:44,939 DEBUG Processing 230/864 atomic regions from SNP 68868 to 69468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,978 DEBUG Processing 144/1139 atomic regions from SNP 43043 to 43644 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,031 DEBUG Processing 235/909 atomic regions from SNP 70434 to 71034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,090 DEBUG Processing 192/480 atomic regions from SNP 57305 to 57905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:45,092 DEBUG Processing 158/1030 atomic regions from SNP 47231 to 47831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,153 DEBUG Processing 231/864 atomic regions from SNP 69168 to 69768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,226 DEBUG Processing 145/1139 atomic regions from SNP 43344 to 43945 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,249 DEBUG Processing 236/909 atomic regions from SNP 70734 to 71334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,299 DEBUG Processing 193/480 atomic regions from SNP 57605 to 58205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:45,351 DEBUG Segmenting atomic regions: 2025-01-31 09:44:45,363 DEBUG Processing 159/1030 atomic regions from SNP 47531 to 48131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,366 DEBUG Processing 232/864 atomic regions from SNP 69468 to 70068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,466 DEBUG Processing 1/653 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,468 DEBUG Processing 237/909 atomic regions from SNP 71034 to 71634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,472 DEBUG Processing 146/1139 atomic regions from SNP 43645 to 44246 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,518 DEBUG Processing 194/480 atomic regions from SNP 57905 to 58505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:45,595 DEBUG Processing 233/864 atomic regions from SNP 69768 to 70368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,637 DEBUG Processing 160/1030 atomic regions from SNP 47831 to 48431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,690 DEBUG Processing 238/909 atomic regions from SNP 71334 to 71934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,715 DEBUG Processing 2/653 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,718 DEBUG Processing 147/1139 atomic regions from SNP 43946 to 44547 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,741 DEBUG Processing 195/480 atomic regions from SNP 58205 to 58805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:45,809 DEBUG Processing 234/864 atomic regions from SNP 70068 to 70668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,907 DEBUG Processing 161/1030 atomic regions from SNP 48131 to 48731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,909 DEBUG Processing 239/909 atomic regions from SNP 71634 to 72234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,955 DEBUG Processing 3/653 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,966 DEBUG Processing 148/1139 atomic regions from SNP 44247 to 44848 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,978 DEBUG Processing 196/480 atomic regions from SNP 58505 to 59105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:46,019 DEBUG Processing 235/864 atomic regions from SNP 70368 to 70968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,130 DEBUG Processing 240/909 atomic regions from SNP 71934 to 72534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,180 DEBUG Processing 162/1030 atomic regions from SNP 48431 to 49031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,181 DEBUG Processing 4/653 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,207 DEBUG Processing 197/480 atomic regions from SNP 58805 to 59405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:46,216 DEBUG Processing 149/1139 atomic regions from SNP 44548 to 45149 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,232 DEBUG Processing 236/864 atomic regions from SNP 70668 to 71268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,348 DEBUG Processing 241/909 atomic regions from SNP 72234 to 72834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,423 DEBUG Processing 198/480 atomic regions from SNP 59105 to 59705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:46,434 DEBUG Processing 5/653 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,453 DEBUG Processing 237/864 atomic regions from SNP 70968 to 71568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,467 DEBUG Processing 163/1030 atomic regions from SNP 48731 to 49331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,473 DEBUG Processing 150/1139 atomic regions from SNP 44849 to 45450 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,564 DEBUG Processing 242/909 atomic regions from SNP 72534 to 73134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,636 DEBUG Processing 199/480 atomic regions from SNP 59405 to 60005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:46,674 DEBUG Processing 238/864 atomic regions from SNP 71268 to 71868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,691 DEBUG Processing 6/653 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,727 DEBUG Processing 151/1139 atomic regions from SNP 45150 to 45751 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,745 DEBUG Processing 164/1030 atomic regions from SNP 49031 to 49631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,782 DEBUG Processing 243/909 atomic regions from SNP 72834 to 73434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,843 DEBUG Processing 200/480 atomic regions from SNP 59705 to 60305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:46,889 DEBUG Processing 239/864 atomic regions from SNP 71568 to 72168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,932 DEBUG Processing 7/653 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,976 DEBUG Processing 152/1139 atomic regions from SNP 45451 to 46052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,003 DEBUG Processing 244/909 atomic regions from SNP 73134 to 73734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,012 DEBUG Processing 165/1030 atomic regions from SNP 49331 to 49931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,051 DEBUG Processing 201/480 atomic regions from SNP 60005 to 60605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:47,100 DEBUG Processing 240/864 atomic regions from SNP 71868 to 72468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,173 DEBUG Processing 8/653 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,223 DEBUG Processing 153/1139 atomic regions from SNP 45752 to 46352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,227 DEBUG Processing 245/909 atomic regions from SNP 73434 to 74034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,262 DEBUG Processing 202/480 atomic regions from SNP 60305 to 60905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:47,286 DEBUG Processing 166/1030 atomic regions from SNP 49631 to 50231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,314 DEBUG Processing 241/864 atomic regions from SNP 72168 to 72768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,421 DEBUG Processing 9/653 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,449 DEBUG Processing 246/909 atomic regions from SNP 73734 to 74334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,475 DEBUG Processing 154/1139 atomic regions from SNP 46052 to 46652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,476 DEBUG Processing 203/480 atomic regions from SNP 60605 to 61205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:47,528 DEBUG Processing 242/864 atomic regions from SNP 72468 to 73068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,564 DEBUG Processing 167/1030 atomic regions from SNP 49931 to 50531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,655 DEBUG Processing 10/653 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,670 DEBUG Processing 247/909 atomic regions from SNP 74034 to 74634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,711 DEBUG Processing 204/480 atomic regions from SNP 60905 to 61505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:47,728 DEBUG Processing 155/1139 atomic regions from SNP 46352 to 46952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,744 DEBUG Processing 243/864 atomic regions from SNP 72768 to 73368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,836 DEBUG Processing 168/1030 atomic regions from SNP 50231 to 50831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,878 DEBUG Processing 11/653 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,892 DEBUG Processing 248/909 atomic regions from SNP 74334 to 74934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,948 DEBUG Processing 205/480 atomic regions from SNP 61205 to 61805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:47,964 DEBUG Processing 244/864 atomic regions from SNP 73068 to 73668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,981 DEBUG Processing 156/1139 atomic regions from SNP 46652 to 47252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,101 DEBUG Processing 169/1030 atomic regions from SNP 50531 to 51131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,113 DEBUG Processing 12/653 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,114 DEBUG Processing 249/909 atomic regions from SNP 74634 to 75234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,180 DEBUG Processing 245/864 atomic regions from SNP 73368 to 73968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,189 DEBUG Processing 206/480 atomic regions from SNP 61505 to 62105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:48,231 DEBUG Processing 157/1139 atomic regions from SNP 46952 to 47552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,337 DEBUG Processing 13/653 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,337 DEBUG Processing 250/909 atomic regions from SNP 74934 to 75534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,372 DEBUG Processing 170/1030 atomic regions from SNP 50831 to 51431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,399 DEBUG Processing 246/864 atomic regions from SNP 73668 to 74268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,439 DEBUG Processing 207/480 atomic regions from SNP 61805 to 62405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:48,479 DEBUG Processing 158/1139 atomic regions from SNP 47252 to 47852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,558 DEBUG Processing 251/909 atomic regions from SNP 75234 to 75834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,572 DEBUG Processing 14/653 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,616 DEBUG Processing 247/864 atomic regions from SNP 73968 to 74568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,644 DEBUG Processing 171/1030 atomic regions from SNP 51131 to 51731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,684 DEBUG Processing 208/480 atomic regions from SNP 62105 to 62705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:48,727 DEBUG Processing 159/1139 atomic regions from SNP 47552 to 48152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,778 DEBUG Processing 252/909 atomic regions from SNP 75534 to 76134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,827 DEBUG Processing 15/653 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,831 DEBUG Processing 248/864 atomic regions from SNP 74268 to 74868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,919 DEBUG Processing 172/1030 atomic regions from SNP 51431 to 52031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,926 DEBUG Processing 209/480 atomic regions from SNP 62405 to 63005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:48,985 DEBUG Processing 160/1139 atomic regions from SNP 47852 to 48452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,999 DEBUG Processing 253/909 atomic regions from SNP 75834 to 76434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,045 DEBUG Processing 249/864 atomic regions from SNP 74568 to 75168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,069 DEBUG Processing 16/653 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,165 DEBUG Processing 210/480 atomic regions from SNP 62705 to 63305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:49,193 DEBUG Processing 173/1030 atomic regions from SNP 51731 to 52331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,223 DEBUG Processing 254/909 atomic regions from SNP 76134 to 76734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,242 DEBUG Processing 161/1139 atomic regions from SNP 48152 to 48752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,258 DEBUG Processing 250/864 atomic regions from SNP 74868 to 75468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,314 DEBUG Processing 17/653 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,405 DEBUG Processing 211/480 atomic regions from SNP 63005 to 63605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:49,449 DEBUG Processing 255/909 atomic regions from SNP 76434 to 77034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,467 DEBUG Processing 174/1030 atomic regions from SNP 52031 to 52631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,476 DEBUG Processing 251/864 atomic regions from SNP 75168 to 75768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,498 DEBUG Processing 162/1139 atomic regions from SNP 48452 to 49052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,551 DEBUG Processing 18/653 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,642 DEBUG Processing 212/480 atomic regions from SNP 63305 to 63905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:49,677 DEBUG Processing 256/909 atomic regions from SNP 76734 to 77334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,697 DEBUG Processing 252/864 atomic regions from SNP 75468 to 76068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,746 DEBUG Processing 175/1030 atomic regions from SNP 52331 to 52931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,750 DEBUG Processing 163/1139 atomic regions from SNP 48752 to 49352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,788 DEBUG Processing 19/653 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,848 DEBUG Processing 213/480 atomic regions from SNP 63605 to 64205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:49,903 DEBUG Processing 257/909 atomic regions from SNP 77034 to 77634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,912 DEBUG Processing 253/864 atomic regions from SNP 75768 to 76368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,000 DEBUG Processing 164/1139 atomic regions from SNP 49052 to 49652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,024 DEBUG Processing 176/1030 atomic regions from SNP 52631 to 53231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,031 DEBUG Processing 20/653 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,069 DEBUG Processing 214/480 atomic regions from SNP 63905 to 64505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:50,125 DEBUG Processing 258/909 atomic regions from SNP 77334 to 77934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,126 DEBUG Processing 254/864 atomic regions from SNP 76068 to 76668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,246 DEBUG Processing 165/1139 atomic regions from SNP 49352 to 49952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,275 DEBUG Processing 21/653 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,293 DEBUG Processing 215/480 atomic regions from SNP 64205 to 64805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:50,301 DEBUG Processing 177/1030 atomic regions from SNP 52931 to 53531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,340 DEBUG Processing 255/864 atomic regions from SNP 76368 to 76968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,349 DEBUG Processing 259/909 atomic regions from SNP 77634 to 78234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,493 DEBUG Processing 166/1139 atomic regions from SNP 49652 to 50252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,503 DEBUG Processing 216/480 atomic regions from SNP 64505 to 65105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:50,517 DEBUG Processing 22/653 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,557 DEBUG Processing 256/864 atomic regions from SNP 76668 to 77268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,571 DEBUG Processing 260/909 atomic regions from SNP 77934 to 78534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,580 DEBUG Processing 178/1030 atomic regions from SNP 53231 to 53831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,734 DEBUG Processing 217/480 atomic regions from SNP 64805 to 65405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:50,742 DEBUG Processing 167/1139 atomic regions from SNP 49952 to 50552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,758 DEBUG Processing 23/653 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,775 DEBUG Processing 257/864 atomic regions from SNP 76968 to 77568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,795 DEBUG Processing 261/909 atomic regions from SNP 78234 to 78834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,860 DEBUG Processing 179/1030 atomic regions from SNP 53531 to 54131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,982 DEBUG Processing 218/480 atomic regions from SNP 65105 to 65705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:50,992 DEBUG Processing 258/864 atomic regions from SNP 77268 to 77868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,993 DEBUG Processing 168/1139 atomic regions from SNP 50252 to 50852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,010 DEBUG Processing 24/653 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,018 DEBUG Processing 262/909 atomic regions from SNP 78534 to 79134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,133 DEBUG Processing 180/1030 atomic regions from SNP 53831 to 54431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,194 DEBUG Processing 219/480 atomic regions from SNP 65405 to 66005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:51,209 DEBUG Processing 259/864 atomic regions from SNP 77568 to 78168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,244 DEBUG Processing 263/909 atomic regions from SNP 78834 to 79434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,246 DEBUG Processing 169/1139 atomic regions from SNP 50552 to 51152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,259 DEBUG Processing 25/653 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,405 DEBUG Processing 220/480 atomic regions from SNP 65705 to 66305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:51,408 DEBUG Processing 181/1030 atomic regions from SNP 54131 to 54731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,427 DEBUG Processing 260/864 atomic regions from SNP 77868 to 78468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,471 DEBUG Processing 264/909 atomic regions from SNP 79134 to 79734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,499 DEBUG Processing 170/1139 atomic regions from SNP 50852 to 51452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,506 DEBUG Processing 26/653 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,610 DEBUG Processing 221/480 atomic regions from SNP 66005 to 66605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:51,641 DEBUG Processing 261/864 atomic regions from SNP 78168 to 78768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,668 DEBUG Processing 182/1030 atomic regions from SNP 54431 to 55031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,694 DEBUG Processing 265/909 atomic regions from SNP 79434 to 80034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,746 DEBUG Processing 27/653 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,746 DEBUG Processing 171/1139 atomic regions from SNP 51152 to 51752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,818 DEBUG Processing 222/480 atomic regions from SNP 66305 to 66905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:51,854 DEBUG Processing 262/864 atomic regions from SNP 78468 to 79068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,917 DEBUG Processing 266/909 atomic regions from SNP 79734 to 80334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,928 DEBUG Processing 183/1030 atomic regions from SNP 54731 to 55331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,971 DEBUG Processing 28/653 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,995 DEBUG Processing 172/1139 atomic regions from SNP 51452 to 52052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,026 DEBUG Processing 223/480 atomic regions from SNP 66605 to 67205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:52,066 DEBUG Processing 263/864 atomic regions from SNP 78768 to 79368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,139 DEBUG Processing 267/909 atomic regions from SNP 80034 to 80634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,190 DEBUG Processing 29/653 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,192 DEBUG Processing 184/1030 atomic regions from SNP 55031 to 55631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,235 DEBUG Processing 224/480 atomic regions from SNP 66905 to 67505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:52,244 DEBUG Processing 173/1139 atomic regions from SNP 51752 to 52352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,278 DEBUG Processing 264/864 atomic regions from SNP 79068 to 79668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,359 DEBUG Processing 268/909 atomic regions from SNP 80334 to 80934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,420 DEBUG Processing 30/653 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,446 DEBUG Processing 225/480 atomic regions from SNP 67205 to 67805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:52,460 DEBUG Processing 185/1030 atomic regions from SNP 55331 to 55931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,491 DEBUG Processing 265/864 atomic regions from SNP 79368 to 79968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,495 DEBUG Processing 174/1139 atomic regions from SNP 52052 to 52652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,582 DEBUG Processing 269/909 atomic regions from SNP 80634 to 81234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,637 DEBUG Processing 31/653 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,655 DEBUG Processing 226/480 atomic regions from SNP 67505 to 68105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:52,708 DEBUG Processing 266/864 atomic regions from SNP 79668 to 80268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,725 DEBUG Processing 186/1030 atomic regions from SNP 55631 to 56231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,746 DEBUG Processing 175/1139 atomic regions from SNP 52352 to 52952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,810 DEBUG Processing 270/909 atomic regions from SNP 80934 to 81534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,854 DEBUG Processing 32/653 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,884 DEBUG Processing 227/480 atomic regions from SNP 67805 to 68405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:52,921 DEBUG Processing 267/864 atomic regions from SNP 79968 to 80568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,978 DEBUG Processing 187/1030 atomic regions from SNP 55931 to 56531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,026 DEBUG Processing 176/1139 atomic regions from SNP 52652 to 53252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,060 DEBUG Processing 271/909 atomic regions from SNP 81234 to 81834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,080 DEBUG Processing 33/653 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,110 DEBUG Processing 228/480 atomic regions from SNP 68105 to 68705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:53,133 DEBUG Processing 268/864 atomic regions from SNP 80268 to 80868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,219 DEBUG Processing 188/1030 atomic regions from SNP 56231 to 56831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,300 DEBUG Processing 177/1139 atomic regions from SNP 52952 to 53552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,316 DEBUG Processing 272/909 atomic regions from SNP 81534 to 82134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,320 DEBUG Processing 229/480 atomic regions from SNP 68405 to 69005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:53,322 DEBUG Processing 34/653 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,346 DEBUG Processing 269/864 atomic regions from SNP 80568 to 81168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,486 DEBUG Processing 189/1030 atomic regions from SNP 56531 to 57131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,531 DEBUG Processing 230/480 atomic regions from SNP 68705 to 69305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:53,540 DEBUG Processing 35/653 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,554 DEBUG Processing 178/1139 atomic regions from SNP 53252 to 53852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,558 DEBUG Processing 270/864 atomic regions from SNP 80868 to 81468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,572 DEBUG Processing 273/909 atomic regions from SNP 81834 to 82434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,737 DEBUG Processing 190/1030 atomic regions from SNP 56831 to 57431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,743 DEBUG Processing 231/480 atomic regions from SNP 69005 to 69605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:53,761 DEBUG Processing 36/653 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,775 DEBUG Processing 271/864 atomic regions from SNP 81168 to 81768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,822 DEBUG Processing 179/1139 atomic regions from SNP 53552 to 54152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,832 DEBUG Processing 274/909 atomic regions from SNP 82134 to 82734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,952 DEBUG Processing 232/480 atomic regions from SNP 69305 to 69905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:53,981 DEBUG Processing 37/653 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,991 DEBUG Processing 272/864 atomic regions from SNP 81468 to 82068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,013 DEBUG Processing 191/1030 atomic regions from SNP 57131 to 57731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,080 DEBUG Processing 275/909 atomic regions from SNP 82434 to 83034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,082 DEBUG Processing 180/1139 atomic regions from SNP 53852 to 54452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,158 DEBUG Processing 233/480 atomic regions from SNP 69605 to 70205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:54,197 DEBUG Processing 38/653 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,207 DEBUG Processing 273/864 atomic regions from SNP 81768 to 82368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,287 DEBUG Processing 192/1030 atomic regions from SNP 57431 to 58031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,315 DEBUG Processing 276/909 atomic regions from SNP 82734 to 83334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,357 DEBUG Processing 181/1139 atomic regions from SNP 54152 to 54752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,364 DEBUG Processing 234/480 atomic regions from SNP 69905 to 70505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:54,413 DEBUG Processing 39/653 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,419 DEBUG Processing 274/864 atomic regions from SNP 82068 to 82668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,546 DEBUG Processing 193/1030 atomic regions from SNP 57731 to 58331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,548 DEBUG Processing 277/909 atomic regions from SNP 83034 to 83634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,573 DEBUG Processing 235/480 atomic regions from SNP 70205 to 70805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:54,624 DEBUG Processing 182/1139 atomic regions from SNP 54452 to 55052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,628 DEBUG Processing 40/653 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,632 DEBUG Processing 275/864 atomic regions from SNP 82368 to 82968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,777 DEBUG Processing 278/909 atomic regions from SNP 83334 to 83934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,782 DEBUG Processing 236/480 atomic regions from SNP 70505 to 71105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:54,809 DEBUG Processing 194/1030 atomic regions from SNP 58031 to 58631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,846 DEBUG Processing 41/653 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,847 DEBUG Processing 276/864 atomic regions from SNP 82668 to 83268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,908 DEBUG Processing 183/1139 atomic regions from SNP 54752 to 55352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,988 DEBUG Processing 237/480 atomic regions from SNP 70805 to 71405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:54,999 DEBUG Processing 279/909 atomic regions from SNP 83634 to 84234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,062 DEBUG Processing 277/864 atomic regions from SNP 82968 to 83568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,064 DEBUG Processing 42/653 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,081 DEBUG Processing 195/1030 atomic regions from SNP 58331 to 58931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,181 DEBUG Processing 184/1139 atomic regions from SNP 55052 to 55652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,194 DEBUG Processing 238/480 atomic regions from SNP 71105 to 71705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:55,218 DEBUG Processing 280/909 atomic regions from SNP 83934 to 84534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,276 DEBUG Processing 278/864 atomic regions from SNP 83268 to 83868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,280 DEBUG Processing 43/653 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,346 DEBUG Processing 196/1030 atomic regions from SNP 58631 to 59231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,402 DEBUG Processing 239/480 atomic regions from SNP 71405 to 72005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:55,428 DEBUG Processing 185/1139 atomic regions from SNP 55352 to 55952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,440 DEBUG Processing 281/909 atomic regions from SNP 84234 to 84834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,487 DEBUG Processing 279/864 atomic regions from SNP 83568 to 84168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,492 DEBUG Processing 44/653 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,610 DEBUG Processing 240/480 atomic regions from SNP 71705 to 72305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:55,612 DEBUG Processing 197/1030 atomic regions from SNP 58931 to 59531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,663 DEBUG Processing 282/909 atomic regions from SNP 84534 to 85134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,677 DEBUG Processing 186/1139 atomic regions from SNP 55652 to 56252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,697 DEBUG Processing 280/864 atomic regions from SNP 83868 to 84468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,704 DEBUG Processing 45/653 atomic regions from SNP 13244 to 13844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,819 DEBUG Processing 241/480 atomic regions from SNP 72005 to 72605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:55,867 DEBUG Processing 198/1030 atomic regions from SNP 59231 to 59831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,888 DEBUG Processing 283/909 atomic regions from SNP 84834 to 85434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,911 DEBUG Processing 281/864 atomic regions from SNP 84168 to 84768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,917 DEBUG Processing 46/653 atomic regions from SNP 13544 to 14144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,927 DEBUG Processing 187/1139 atomic regions from SNP 55952 to 56552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,024 DEBUG Processing 242/480 atomic regions from SNP 72305 to 72905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:56,113 DEBUG Processing 284/909 atomic regions from SNP 85134 to 85734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,127 DEBUG Processing 282/864 atomic regions from SNP 84468 to 85068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,130 DEBUG Processing 199/1030 atomic regions from SNP 59531 to 60131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,133 DEBUG Processing 47/653 atomic regions from SNP 13844 to 14444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,178 DEBUG Processing 188/1139 atomic regions from SNP 56252 to 56852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,228 DEBUG Processing 243/480 atomic regions from SNP 72605 to 73205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:56,340 DEBUG Processing 285/909 atomic regions from SNP 85434 to 86034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,356 DEBUG Processing 48/653 atomic regions from SNP 14144 to 14744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,365 DEBUG Processing 283/864 atomic regions from SNP 84768 to 85368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,398 DEBUG Processing 200/1030 atomic regions from SNP 59831 to 60431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,429 DEBUG Processing 189/1139 atomic regions from SNP 56552 to 57152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,433 DEBUG Processing 244/480 atomic regions from SNP 72905 to 73505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:56,562 DEBUG Processing 286/909 atomic regions from SNP 85734 to 86334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,574 DEBUG Processing 49/653 atomic regions from SNP 14444 to 15044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,602 DEBUG Processing 284/864 atomic regions from SNP 85068 to 85668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,641 DEBUG Processing 245/480 atomic regions from SNP 73205 to 73805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:56,642 DEBUG Processing 201/1030 atomic regions from SNP 60131 to 60731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,698 DEBUG Processing 190/1139 atomic regions from SNP 56852 to 57452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,785 DEBUG Processing 287/909 atomic regions from SNP 86034 to 86634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,793 DEBUG Processing 50/653 atomic regions from SNP 14744 to 15344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,829 DEBUG Processing 285/864 atomic regions from SNP 85368 to 85968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,852 DEBUG Processing 246/480 atomic regions from SNP 73505 to 74105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:56,884 DEBUG Processing 202/1030 atomic regions from SNP 60431 to 61031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,978 DEBUG Processing 191/1139 atomic regions from SNP 57152 to 57752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,006 DEBUG Processing 288/909 atomic regions from SNP 86334 to 86934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,006 DEBUG Processing 51/653 atomic regions from SNP 15044 to 15644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,045 DEBUG Processing 286/864 atomic regions from SNP 85668 to 86268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,062 DEBUG Processing 247/480 atomic regions from SNP 73805 to 74405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:57,123 DEBUG Processing 203/1030 atomic regions from SNP 60731 to 61331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,218 DEBUG Processing 52/653 atomic regions from SNP 15344 to 15944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,227 DEBUG Processing 289/909 atomic regions from SNP 86634 to 87234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,259 DEBUG Processing 287/864 atomic regions from SNP 85968 to 86568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,259 DEBUG Processing 192/1139 atomic regions from SNP 57452 to 58052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,269 DEBUG Processing 248/480 atomic regions from SNP 74105 to 74705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:57,361 DEBUG Processing 204/1030 atomic regions from SNP 61031 to 61631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,431 DEBUG Processing 53/653 atomic regions from SNP 15644 to 16244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,450 DEBUG Processing 290/909 atomic regions from SNP 86934 to 87534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,474 DEBUG Processing 288/864 atomic regions from SNP 86268 to 86868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,478 DEBUG Processing 249/480 atomic regions from SNP 74405 to 75005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:57,542 DEBUG Processing 193/1139 atomic regions from SNP 57752 to 58352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,599 DEBUG Processing 205/1030 atomic regions from SNP 61331 to 61931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,644 DEBUG Processing 54/653 atomic regions from SNP 15944 to 16544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,671 DEBUG Processing 291/909 atomic regions from SNP 87234 to 87834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,684 DEBUG Processing 250/480 atomic regions from SNP 74705 to 75305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:57,722 DEBUG Processing 289/864 atomic regions from SNP 86568 to 87168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,825 DEBUG Processing 194/1139 atomic regions from SNP 58052 to 58652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,840 DEBUG Processing 206/1030 atomic regions from SNP 61631 to 62231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,862 DEBUG Processing 55/653 atomic regions from SNP 16244 to 16844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,891 DEBUG Processing 251/480 atomic regions from SNP 75005 to 75605 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:57,892 DEBUG Processing 292/909 atomic regions from SNP 87534 to 88134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,951 DEBUG Processing 290/864 atomic regions from SNP 86868 to 87468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,079 DEBUG Processing 56/653 atomic regions from SNP 16544 to 17144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,092 DEBUG Processing 207/1030 atomic regions from SNP 61931 to 62531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,101 DEBUG Processing 252/480 atomic regions from SNP 75305 to 75905 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:58,109 DEBUG Processing 195/1139 atomic regions from SNP 58352 to 58952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,128 DEBUG Processing 293/909 atomic regions from SNP 87834 to 88434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,165 DEBUG Processing 291/864 atomic regions from SNP 87168 to 87768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,298 DEBUG Processing 57/653 atomic regions from SNP 16844 to 17444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,313 DEBUG Processing 253/480 atomic regions from SNP 75605 to 76205 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:58,343 DEBUG Processing 208/1030 atomic regions from SNP 62231 to 62831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,359 DEBUG Processing 294/909 atomic regions from SNP 88134 to 88734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,376 DEBUG Processing 292/864 atomic regions from SNP 87468 to 88068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,391 DEBUG Processing 196/1139 atomic regions from SNP 58652 to 59252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,513 DEBUG Processing 58/653 atomic regions from SNP 17144 to 17744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,521 DEBUG Processing 254/480 atomic regions from SNP 75905 to 76505 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:58,583 DEBUG Processing 295/909 atomic regions from SNP 88434 to 89034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,588 DEBUG Processing 293/864 atomic regions from SNP 87768 to 88368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,605 DEBUG Processing 209/1030 atomic regions from SNP 62531 to 63131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,656 DEBUG Processing 197/1139 atomic regions from SNP 58952 to 59552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,728 DEBUG Processing 255/480 atomic regions from SNP 76205 to 76805 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:58,728 DEBUG Processing 59/653 atomic regions from SNP 17444 to 18044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,801 DEBUG Processing 294/864 atomic regions from SNP 88068 to 88668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,804 DEBUG Processing 296/909 atomic regions from SNP 88734 to 89334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,861 DEBUG Processing 210/1030 atomic regions from SNP 62831 to 63431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,920 DEBUG Processing 198/1139 atomic regions from SNP 59252 to 59852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,936 DEBUG Processing 256/480 atomic regions from SNP 76505 to 77105 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:58,945 DEBUG Processing 60/653 atomic regions from SNP 17744 to 18344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,013 DEBUG Processing 295/864 atomic regions from SNP 88368 to 88968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,023 DEBUG Processing 297/909 atomic regions from SNP 89034 to 89634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,101 DEBUG Processing 211/1030 atomic regions from SNP 63131 to 63731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,145 DEBUG Processing 257/480 atomic regions from SNP 76805 to 77405 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:59,160 DEBUG Processing 61/653 atomic regions from SNP 18044 to 18644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,196 DEBUG Processing 199/1139 atomic regions from SNP 59552 to 60152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,227 DEBUG Processing 296/864 atomic regions from SNP 88668 to 89268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,242 DEBUG Processing 298/909 atomic regions from SNP 89334 to 89934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,343 DEBUG Processing 212/1030 atomic regions from SNP 63431 to 64031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,357 DEBUG Processing 258/480 atomic regions from SNP 77105 to 77705 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:59,376 DEBUG Processing 62/653 atomic regions from SNP 18344 to 18944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,440 DEBUG Processing 297/864 atomic regions from SNP 88968 to 89568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,459 DEBUG Processing 200/1139 atomic regions from SNP 59852 to 60452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,463 DEBUG Processing 299/909 atomic regions from SNP 89634 to 90234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,566 DEBUG Processing 259/480 atomic regions from SNP 77405 to 78005 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:59,592 DEBUG Processing 63/653 atomic regions from SNP 18644 to 19244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,604 DEBUG Processing 213/1030 atomic regions from SNP 63731 to 64331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,652 DEBUG Processing 298/864 atomic regions from SNP 89268 to 89868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,685 DEBUG Processing 300/909 atomic regions from SNP 89934 to 90534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,726 DEBUG Processing 201/1139 atomic regions from SNP 60152 to 60752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,774 DEBUG Processing 260/480 atomic regions from SNP 77705 to 78305 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:59,810 DEBUG Processing 64/653 atomic regions from SNP 18944 to 19544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,864 DEBUG Processing 299/864 atomic regions from SNP 89568 to 90168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,872 DEBUG Processing 214/1030 atomic regions from SNP 64031 to 64631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,909 DEBUG Processing 301/909 atomic regions from SNP 90234 to 90834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,982 DEBUG Processing 261/480 atomic regions from SNP 78005 to 78605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:00,003 DEBUG Processing 202/1139 atomic regions from SNP 60452 to 61052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,028 DEBUG Processing 65/653 atomic regions from SNP 19244 to 19844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,078 DEBUG Processing 300/864 atomic regions from SNP 89868 to 90468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,133 DEBUG Processing 302/909 atomic regions from SNP 90534 to 91134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,140 DEBUG Processing 215/1030 atomic regions from SNP 64331 to 64931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,192 DEBUG Processing 262/480 atomic regions from SNP 78305 to 78905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:00,245 DEBUG Processing 66/653 atomic regions from SNP 19544 to 20144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,279 DEBUG Processing 203/1139 atomic regions from SNP 60752 to 61352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,290 DEBUG Processing 301/864 atomic regions from SNP 90168 to 90768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,356 DEBUG Processing 303/909 atomic regions from SNP 90834 to 91434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,395 DEBUG Processing 216/1030 atomic regions from SNP 64631 to 65231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,401 DEBUG Processing 263/480 atomic regions from SNP 78605 to 79205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:00,462 DEBUG Processing 67/653 atomic regions from SNP 19844 to 20444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,503 DEBUG Processing 302/864 atomic regions from SNP 90468 to 91068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,540 DEBUG Processing 204/1139 atomic regions from SNP 61052 to 61652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,578 DEBUG Processing 304/909 atomic regions from SNP 91134 to 91734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,611 DEBUG Processing 264/480 atomic regions from SNP 78905 to 79505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:00,668 DEBUG Processing 217/1030 atomic regions from SNP 64931 to 65531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,678 DEBUG Processing 68/653 atomic regions from SNP 20144 to 20744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,715 DEBUG Processing 303/864 atomic regions from SNP 90768 to 91368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,789 DEBUG Processing 205/1139 atomic regions from SNP 61352 to 61952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,801 DEBUG Processing 305/909 atomic regions from SNP 91434 to 92034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,819 DEBUG Processing 265/480 atomic regions from SNP 79205 to 79805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:00,895 DEBUG Processing 69/653 atomic regions from SNP 20444 to 21044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,914 DEBUG Processing 218/1030 atomic regions from SNP 65231 to 65831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,929 DEBUG Processing 304/864 atomic regions from SNP 91068 to 91668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,025 DEBUG Processing 306/909 atomic regions from SNP 91734 to 92334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,036 DEBUG Processing 266/480 atomic regions from SNP 79505 to 80105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:01,041 DEBUG Processing 206/1139 atomic regions from SNP 61652 to 62252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,114 DEBUG Processing 70/653 atomic regions from SNP 20744 to 21344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,148 DEBUG Processing 305/864 atomic regions from SNP 91368 to 91968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,153 DEBUG Processing 219/1030 atomic regions from SNP 65531 to 66131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,245 DEBUG Processing 267/480 atomic regions from SNP 79805 to 80405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:01,249 DEBUG Processing 307/909 atomic regions from SNP 92034 to 92634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,291 DEBUG Processing 207/1139 atomic regions from SNP 61952 to 62552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,331 DEBUG Processing 71/653 atomic regions from SNP 21044 to 21644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,362 DEBUG Processing 306/864 atomic regions from SNP 91668 to 92268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,394 DEBUG Processing 220/1030 atomic regions from SNP 65831 to 66431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,456 DEBUG Processing 268/480 atomic regions from SNP 80105 to 80705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:01,472 DEBUG Processing 308/909 atomic regions from SNP 92334 to 92934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,545 DEBUG Processing 72/653 atomic regions from SNP 21344 to 21944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,566 DEBUG Processing 208/1139 atomic regions from SNP 62252 to 62852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,577 DEBUG Processing 307/864 atomic regions from SNP 91968 to 92568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,636 DEBUG Processing 221/1030 atomic regions from SNP 66131 to 66731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,666 DEBUG Processing 269/480 atomic regions from SNP 80405 to 81005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:01,694 DEBUG Processing 309/909 atomic regions from SNP 92634 to 93234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,759 DEBUG Processing 73/653 atomic regions from SNP 21644 to 22244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,789 DEBUG Processing 308/864 atomic regions from SNP 92268 to 92868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,846 DEBUG Processing 209/1139 atomic regions from SNP 62552 to 63152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,877 DEBUG Processing 270/480 atomic regions from SNP 80705 to 81305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:01,878 DEBUG Processing 222/1030 atomic regions from SNP 66431 to 67031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,927 DEBUG Processing 310/909 atomic regions from SNP 92934 to 93534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,976 DEBUG Processing 74/653 atomic regions from SNP 21944 to 22544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,999 DEBUG Processing 309/864 atomic regions from SNP 92568 to 93168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,093 DEBUG Processing 271/480 atomic regions from SNP 81005 to 81605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:02,107 DEBUG Processing 210/1139 atomic regions from SNP 62852 to 63452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,121 DEBUG Processing 223/1030 atomic regions from SNP 66731 to 67331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,151 DEBUG Processing 311/909 atomic regions from SNP 93234 to 93834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,189 DEBUG Processing 75/653 atomic regions from SNP 22244 to 22844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,209 DEBUG Processing 310/864 atomic regions from SNP 92868 to 93468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,307 DEBUG Processing 272/480 atomic regions from SNP 81305 to 81905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:02,365 DEBUG Processing 224/1030 atomic regions from SNP 67031 to 67631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,373 DEBUG Processing 312/909 atomic regions from SNP 93534 to 94134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,376 DEBUG Processing 211/1139 atomic regions from SNP 63152 to 63752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,419 DEBUG Processing 311/864 atomic regions from SNP 93168 to 93768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,421 DEBUG Processing 76/653 atomic regions from SNP 22544 to 23144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,521 DEBUG Processing 273/480 atomic regions from SNP 81605 to 82205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:02,597 DEBUG Processing 313/909 atomic regions from SNP 93834 to 94434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,607 DEBUG Processing 225/1030 atomic regions from SNP 67331 to 67931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,632 DEBUG Processing 312/864 atomic regions from SNP 93468 to 94068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,640 DEBUG Processing 77/653 atomic regions from SNP 22844 to 23444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,662 DEBUG Processing 212/1139 atomic regions from SNP 63452 to 64052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,738 DEBUG Processing 274/480 atomic regions from SNP 81905 to 82505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:02,833 DEBUG Processing 314/909 atomic regions from SNP 94134 to 94734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,846 DEBUG Processing 313/864 atomic regions from SNP 93768 to 94368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,852 DEBUG Processing 226/1030 atomic regions from SNP 67631 to 68231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,855 DEBUG Processing 78/653 atomic regions from SNP 23144 to 23744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,936 DEBUG Processing 213/1139 atomic regions from SNP 63752 to 64352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,943 DEBUG Processing 275/480 atomic regions from SNP 82205 to 82805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:03,061 DEBUG Processing 314/864 atomic regions from SNP 94068 to 94668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,073 DEBUG Processing 79/653 atomic regions from SNP 23444 to 24044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,081 DEBUG Processing 315/909 atomic regions from SNP 94434 to 95034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,096 DEBUG Processing 227/1030 atomic regions from SNP 67931 to 68531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,151 DEBUG Processing 276/480 atomic regions from SNP 82505 to 83105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:03,184 DEBUG Processing 214/1139 atomic regions from SNP 64052 to 64652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,278 DEBUG Processing 315/864 atomic regions from SNP 94368 to 94968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,292 DEBUG Processing 80/653 atomic regions from SNP 23744 to 24344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,307 DEBUG Processing 316/909 atomic regions from SNP 94734 to 95334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,338 DEBUG Processing 228/1030 atomic regions from SNP 68231 to 68831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,360 DEBUG Processing 277/480 atomic regions from SNP 82805 to 83405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:03,429 DEBUG Processing 215/1139 atomic regions from SNP 64352 to 64952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,491 DEBUG Processing 316/864 atomic regions from SNP 94668 to 95268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,509 DEBUG Processing 81/653 atomic regions from SNP 24044 to 24644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,531 DEBUG Processing 317/909 atomic regions from SNP 95034 to 95634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,570 DEBUG Processing 278/480 atomic regions from SNP 83105 to 83705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:03,580 DEBUG Processing 229/1030 atomic regions from SNP 68531 to 69131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,676 DEBUG Processing 216/1139 atomic regions from SNP 64652 to 65252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,706 DEBUG Processing 317/864 atomic regions from SNP 94968 to 95568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,724 DEBUG Processing 82/653 atomic regions from SNP 24344 to 24944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,754 DEBUG Processing 318/909 atomic regions from SNP 95334 to 95934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,780 DEBUG Processing 279/480 atomic regions from SNP 83405 to 84005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:03,821 DEBUG Processing 230/1030 atomic regions from SNP 68831 to 69431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,918 DEBUG Processing 318/864 atomic regions from SNP 95268 to 95868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,922 DEBUG Processing 217/1139 atomic regions from SNP 64952 to 65552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,940 DEBUG Processing 83/653 atomic regions from SNP 24644 to 25244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,975 DEBUG Processing 319/909 atomic regions from SNP 95634 to 96234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,988 DEBUG Processing 280/480 atomic regions from SNP 83705 to 84305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:04,063 DEBUG Processing 231/1030 atomic regions from SNP 69131 to 69731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,133 DEBUG Processing 319/864 atomic regions from SNP 95568 to 96168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,156 DEBUG Processing 84/653 atomic regions from SNP 24944 to 25544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,171 DEBUG Processing 218/1139 atomic regions from SNP 65252 to 65852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,196 DEBUG Processing 281/480 atomic regions from SNP 84005 to 84605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:04,197 DEBUG Processing 320/909 atomic regions from SNP 95934 to 96534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,303 DEBUG Processing 232/1030 atomic regions from SNP 69431 to 70031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,356 DEBUG Processing 320/864 atomic regions from SNP 95868 to 96468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,385 DEBUG Processing 85/653 atomic regions from SNP 25244 to 25844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,410 DEBUG Processing 282/480 atomic regions from SNP 84305 to 84905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:04,421 DEBUG Processing 321/909 atomic regions from SNP 96234 to 96834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,424 DEBUG Processing 219/1139 atomic regions from SNP 65552 to 66152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,540 DEBUG Processing 233/1030 atomic regions from SNP 69731 to 70331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,573 DEBUG Processing 321/864 atomic regions from SNP 96168 to 96768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,609 DEBUG Processing 86/653 atomic regions from SNP 25544 to 26144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,623 DEBUG Processing 283/480 atomic regions from SNP 84605 to 85205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:04,647 DEBUG Processing 322/909 atomic regions from SNP 96534 to 97134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,678 DEBUG Processing 220/1139 atomic regions from SNP 65852 to 66452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,780 DEBUG Processing 234/1030 atomic regions from SNP 70031 to 70631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,786 DEBUG Processing 322/864 atomic regions from SNP 96468 to 97068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,829 DEBUG Processing 87/653 atomic regions from SNP 25844 to 26444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,834 DEBUG Processing 284/480 atomic regions from SNP 84905 to 85505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:04,870 DEBUG Processing 323/909 atomic regions from SNP 96834 to 97434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,925 DEBUG Processing 221/1139 atomic regions from SNP 66152 to 66752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,002 DEBUG Processing 323/864 atomic regions from SNP 96768 to 97368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,022 DEBUG Processing 235/1030 atomic regions from SNP 70331 to 70931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,044 DEBUG Processing 285/480 atomic regions from SNP 85205 to 85805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:05,048 DEBUG Processing 88/653 atomic regions from SNP 26144 to 26744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,091 DEBUG Processing 324/909 atomic regions from SNP 97134 to 97734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,171 DEBUG Processing 222/1139 atomic regions from SNP 66452 to 67052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,214 DEBUG Processing 324/864 atomic regions from SNP 97068 to 97668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,255 DEBUG Processing 286/480 atomic regions from SNP 85505 to 86105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:05,266 DEBUG Processing 236/1030 atomic regions from SNP 70631 to 71231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,266 DEBUG Processing 89/653 atomic regions from SNP 26444 to 27044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,312 DEBUG Processing 325/909 atomic regions from SNP 97434 to 98034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,418 DEBUG Processing 223/1139 atomic regions from SNP 66752 to 67352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,428 DEBUG Processing 325/864 atomic regions from SNP 97368 to 97968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,465 DEBUG Processing 287/480 atomic regions from SNP 85805 to 86405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:05,485 DEBUG Processing 90/653 atomic regions from SNP 26744 to 27344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,510 DEBUG Processing 237/1030 atomic regions from SNP 70931 to 71531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,533 DEBUG Processing 326/909 atomic regions from SNP 97734 to 98334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,643 DEBUG Processing 326/864 atomic regions from SNP 97668 to 98268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,667 DEBUG Processing 224/1139 atomic regions from SNP 67052 to 67652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,677 DEBUG Processing 288/480 atomic regions from SNP 86105 to 86705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:05,722 DEBUG Processing 91/653 atomic regions from SNP 27044 to 27644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,751 DEBUG Processing 238/1030 atomic regions from SNP 71231 to 71831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,758 DEBUG Processing 327/909 atomic regions from SNP 98034 to 98634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,855 DEBUG Processing 327/864 atomic regions from SNP 97968 to 98568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,888 DEBUG Processing 289/480 atomic regions from SNP 86405 to 87005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:05,917 DEBUG Processing 225/1139 atomic regions from SNP 67352 to 67952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,960 DEBUG Processing 92/653 atomic regions from SNP 27344 to 27944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,981 DEBUG Processing 328/909 atomic regions from SNP 98334 to 98934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,000 DEBUG Processing 239/1030 atomic regions from SNP 71531 to 72131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,069 DEBUG Processing 328/864 atomic regions from SNP 98268 to 98868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,097 DEBUG Processing 290/480 atomic regions from SNP 86705 to 87305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:06,169 DEBUG Processing 226/1139 atomic regions from SNP 67652 to 68252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,178 DEBUG Processing 93/653 atomic regions from SNP 27644 to 28244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,203 DEBUG Processing 329/909 atomic regions from SNP 98634 to 99234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,240 DEBUG Processing 240/1030 atomic regions from SNP 71831 to 72431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,282 DEBUG Processing 329/864 atomic regions from SNP 98568 to 99168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,305 DEBUG Processing 291/480 atomic regions from SNP 87005 to 87605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:06,399 DEBUG Processing 94/653 atomic regions from SNP 27944 to 28544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,420 DEBUG Processing 227/1139 atomic regions from SNP 67952 to 68552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,425 DEBUG Processing 330/909 atomic regions from SNP 98934 to 99534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,480 DEBUG Processing 241/1030 atomic regions from SNP 72131 to 72731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,493 DEBUG Processing 330/864 atomic regions from SNP 98868 to 99468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,512 DEBUG Processing 292/480 atomic regions from SNP 87305 to 87905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:06,620 DEBUG Processing 95/653 atomic regions from SNP 28244 to 28844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,647 DEBUG Processing 331/909 atomic regions from SNP 99234 to 99834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,670 DEBUG Processing 228/1139 atomic regions from SNP 68252 to 68852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,709 DEBUG Processing 331/864 atomic regions from SNP 99168 to 99768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,719 DEBUG Processing 293/480 atomic regions from SNP 87605 to 88205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:06,721 DEBUG Processing 242/1030 atomic regions from SNP 72431 to 73031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,841 DEBUG Processing 96/653 atomic regions from SNP 28544 to 29144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,911 DEBUG Processing 332/909 atomic regions from SNP 99534 to 100134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,921 DEBUG Processing 229/1139 atomic regions from SNP 68552 to 69152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,925 DEBUG Processing 332/864 atomic regions from SNP 99468 to 100068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,931 DEBUG Processing 294/480 atomic regions from SNP 87905 to 88505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:06,962 DEBUG Processing 243/1030 atomic regions from SNP 72731 to 73331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,058 DEBUG Processing 97/653 atomic regions from SNP 28844 to 29444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,139 DEBUG Processing 333/909 atomic regions from SNP 99834 to 100434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,146 DEBUG Processing 295/480 atomic regions from SNP 88205 to 88805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:07,147 DEBUG Processing 333/864 atomic regions from SNP 99768 to 100368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,175 DEBUG Processing 230/1139 atomic regions from SNP 68852 to 69452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,205 DEBUG Processing 244/1030 atomic regions from SNP 73031 to 73631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,291 DEBUG Processing 98/653 atomic regions from SNP 29144 to 29744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,360 DEBUG Processing 296/480 atomic regions from SNP 88505 to 89105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:07,364 DEBUG Processing 334/909 atomic regions from SNP 100134 to 100734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,365 DEBUG Processing 334/864 atomic regions from SNP 100068 to 100668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,428 DEBUG Processing 231/1139 atomic regions from SNP 69152 to 69752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,448 DEBUG Processing 245/1030 atomic regions from SNP 73331 to 73931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,532 DEBUG Processing 99/653 atomic regions from SNP 29444 to 30044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,571 DEBUG Processing 297/480 atomic regions from SNP 88805 to 89405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:07,582 DEBUG Processing 335/864 atomic regions from SNP 100368 to 100968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,589 DEBUG Processing 335/909 atomic regions from SNP 100434 to 101034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,679 DEBUG Processing 232/1139 atomic regions from SNP 69452 to 70052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,689 DEBUG Processing 246/1030 atomic regions from SNP 73631 to 74231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,771 DEBUG Processing 100/653 atomic regions from SNP 29744 to 30344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,779 DEBUG Processing 298/480 atomic regions from SNP 89105 to 89705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:07,798 DEBUG Processing 336/864 atomic regions from SNP 100668 to 101268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,813 DEBUG Processing 336/909 atomic regions from SNP 100734 to 101334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,929 DEBUG Processing 233/1139 atomic regions from SNP 69752 to 70352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,930 DEBUG Processing 247/1030 atomic regions from SNP 73931 to 74531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,988 DEBUG Processing 299/480 atomic regions from SNP 89405 to 90005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:08,002 DEBUG Processing 101/653 atomic regions from SNP 30044 to 30644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,013 DEBUG Processing 337/864 atomic regions from SNP 100968 to 101568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,034 DEBUG Processing 337/909 atomic regions from SNP 101034 to 101634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,171 DEBUG Processing 248/1030 atomic regions from SNP 74231 to 74831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,187 DEBUG Processing 234/1139 atomic regions from SNP 70052 to 70652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,199 DEBUG Processing 300/480 atomic regions from SNP 89705 to 90305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:08,227 DEBUG Processing 338/864 atomic regions from SNP 101268 to 101868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,236 DEBUG Processing 102/653 atomic regions from SNP 30344 to 30944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,253 DEBUG Processing 338/909 atomic regions from SNP 101334 to 101934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,412 DEBUG Processing 301/480 atomic regions from SNP 90005 to 90605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:08,413 DEBUG Processing 249/1030 atomic regions from SNP 74531 to 75131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,444 DEBUG Processing 339/864 atomic regions from SNP 101568 to 102168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,461 DEBUG Processing 235/1139 atomic regions from SNP 70352 to 70952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,476 DEBUG Processing 339/909 atomic regions from SNP 101634 to 102234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,478 DEBUG Processing 103/653 atomic regions from SNP 30644 to 31244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,624 DEBUG Processing 302/480 atomic regions from SNP 90305 to 90905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:08,658 DEBUG Processing 250/1030 atomic regions from SNP 74831 to 75431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,661 DEBUG Processing 340/864 atomic regions from SNP 101868 to 102468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,700 DEBUG Processing 340/909 atomic regions from SNP 101934 to 102534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,713 DEBUG Processing 236/1139 atomic regions from SNP 70652 to 71252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,717 DEBUG Processing 104/653 atomic regions from SNP 30944 to 31544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,831 DEBUG Processing 303/480 atomic regions from SNP 90605 to 91205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:08,876 DEBUG Processing 341/864 atomic regions from SNP 102168 to 102768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,903 DEBUG Processing 251/1030 atomic regions from SNP 75131 to 75731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,925 DEBUG Processing 341/909 atomic regions from SNP 102234 to 102834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,936 DEBUG Processing 105/653 atomic regions from SNP 31244 to 31844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,964 DEBUG Processing 237/1139 atomic regions from SNP 70952 to 71552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,036 DEBUG Processing 304/480 atomic regions from SNP 90905 to 91505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:09,090 DEBUG Processing 342/864 atomic regions from SNP 102468 to 103068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,144 DEBUG Processing 252/1030 atomic regions from SNP 75431 to 76031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,149 DEBUG Processing 342/909 atomic regions from SNP 102534 to 103134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,155 DEBUG Processing 106/653 atomic regions from SNP 31544 to 32144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,214 DEBUG Processing 238/1139 atomic regions from SNP 71252 to 71852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,243 DEBUG Processing 305/480 atomic regions from SNP 91205 to 91805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:09,303 DEBUG Processing 343/864 atomic regions from SNP 102768 to 103368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,372 DEBUG Processing 343/909 atomic regions from SNP 102834 to 103434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,374 DEBUG Processing 107/653 atomic regions from SNP 31844 to 32444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,404 DEBUG Processing 253/1030 atomic regions from SNP 75731 to 76331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,450 DEBUG Processing 306/480 atomic regions from SNP 91505 to 92105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:09,468 DEBUG Processing 239/1139 atomic regions from SNP 71552 to 72152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,512 DEBUG Processing 344/864 atomic regions from SNP 103068 to 103668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,591 DEBUG Processing 108/653 atomic regions from SNP 32144 to 32744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,595 DEBUG Processing 344/909 atomic regions from SNP 103134 to 103734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,648 DEBUG Processing 254/1030 atomic regions from SNP 76031 to 76631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,682 DEBUG Processing 307/480 atomic regions from SNP 91805 to 92405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:09,721 DEBUG Processing 240/1139 atomic regions from SNP 71852 to 72452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,725 DEBUG Processing 345/864 atomic regions from SNP 103368 to 103968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,817 DEBUG Processing 345/909 atomic regions from SNP 103434 to 104034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,832 DEBUG Processing 109/653 atomic regions from SNP 32444 to 33044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,890 DEBUG Processing 255/1030 atomic regions from SNP 76331 to 76931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,907 DEBUG Processing 308/480 atomic regions from SNP 92105 to 92705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:09,940 DEBUG Processing 346/864 atomic regions from SNP 103668 to 104268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,993 DEBUG Processing 241/1139 atomic regions from SNP 72152 to 72752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,048 DEBUG Processing 346/909 atomic regions from SNP 103734 to 104334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,073 DEBUG Processing 110/653 atomic regions from SNP 32744 to 33344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,116 DEBUG Processing 309/480 atomic regions from SNP 92405 to 93005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:10,130 DEBUG Processing 256/1030 atomic regions from SNP 76631 to 77231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,152 DEBUG Processing 347/864 atomic regions from SNP 103968 to 104568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,250 DEBUG Processing 242/1139 atomic regions from SNP 72452 to 73052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,291 DEBUG Processing 111/653 atomic regions from SNP 33044 to 33644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,302 DEBUG Processing 347/909 atomic regions from SNP 104034 to 104634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,324 DEBUG Processing 310/480 atomic regions from SNP 92705 to 93305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:10,364 DEBUG Processing 348/864 atomic regions from SNP 104268 to 104868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,374 DEBUG Processing 257/1030 atomic regions from SNP 76931 to 77531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,500 DEBUG Processing 243/1139 atomic regions from SNP 72752 to 73352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,513 DEBUG Processing 112/653 atomic regions from SNP 33344 to 33944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,526 DEBUG Processing 348/909 atomic regions from SNP 104334 to 104934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,536 DEBUG Processing 311/480 atomic regions from SNP 93005 to 93605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:10,578 DEBUG Processing 349/864 atomic regions from SNP 104568 to 105168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,616 DEBUG Processing 258/1030 atomic regions from SNP 77231 to 77831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,731 DEBUG Processing 113/653 atomic regions from SNP 33644 to 34244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,747 DEBUG Processing 312/480 atomic regions from SNP 93305 to 93905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:10,752 DEBUG Processing 244/1139 atomic regions from SNP 73052 to 73652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,757 DEBUG Processing 349/909 atomic regions from SNP 104634 to 105234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,799 DEBUG Processing 350/864 atomic regions from SNP 104868 to 105468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,855 DEBUG Processing 259/1030 atomic regions from SNP 77531 to 78131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,950 DEBUG Processing 114/653 atomic regions from SNP 33944 to 34544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,959 DEBUG Processing 313/480 atomic regions from SNP 93605 to 94205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:10,980 DEBUG Processing 350/909 atomic regions from SNP 104934 to 105534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,002 DEBUG Processing 245/1139 atomic regions from SNP 73352 to 73952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,013 DEBUG Processing 351/864 atomic regions from SNP 105168 to 105768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,094 DEBUG Processing 260/1030 atomic regions from SNP 77831 to 78431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,166 DEBUG Processing 115/653 atomic regions from SNP 34244 to 34844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,170 DEBUG Processing 314/480 atomic regions from SNP 93905 to 94505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:11,202 DEBUG Processing 351/909 atomic regions from SNP 105234 to 105834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,236 DEBUG Processing 352/864 atomic regions from SNP 105468 to 106068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,250 DEBUG Processing 246/1139 atomic regions from SNP 73652 to 74252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,333 DEBUG Processing 261/1030 atomic regions from SNP 78131 to 78731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,379 DEBUG Processing 315/480 atomic regions from SNP 94205 to 94805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:11,388 DEBUG Processing 116/653 atomic regions from SNP 34544 to 35144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,424 DEBUG Processing 352/909 atomic regions from SNP 105534 to 106134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,452 DEBUG Processing 353/864 atomic regions from SNP 105768 to 106368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,498 DEBUG Processing 247/1139 atomic regions from SNP 73952 to 74552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,572 DEBUG Processing 262/1030 atomic regions from SNP 78431 to 79031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,589 DEBUG Processing 316/480 atomic regions from SNP 94505 to 95105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:11,606 DEBUG Processing 117/653 atomic regions from SNP 34844 to 35444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,647 DEBUG Processing 353/909 atomic regions from SNP 105834 to 106434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,666 DEBUG Processing 354/864 atomic regions from SNP 106068 to 106668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,747 DEBUG Processing 248/1139 atomic regions from SNP 74252 to 74852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,810 DEBUG Processing 317/480 atomic regions from SNP 94805 to 95405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:11,815 DEBUG Processing 263/1030 atomic regions from SNP 78731 to 79331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,823 DEBUG Processing 118/653 atomic regions from SNP 35144 to 35744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,872 DEBUG Processing 354/909 atomic regions from SNP 106134 to 106734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,882 DEBUG Processing 355/864 atomic regions from SNP 106368 to 106968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,995 DEBUG Processing 249/1139 atomic regions from SNP 74552 to 75152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,039 DEBUG Processing 119/653 atomic regions from SNP 35444 to 36044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,040 DEBUG Processing 318/480 atomic regions from SNP 95105 to 95705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:12,062 DEBUG Processing 264/1030 atomic regions from SNP 79031 to 79631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,113 DEBUG Processing 356/864 atomic regions from SNP 106668 to 107268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,113 DEBUG Processing 355/909 atomic regions from SNP 106434 to 107034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,249 DEBUG Processing 250/1139 atomic regions from SNP 74852 to 75452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,255 DEBUG Processing 120/653 atomic regions from SNP 35744 to 36344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,274 DEBUG Processing 319/480 atomic regions from SNP 95405 to 96005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:12,303 DEBUG Processing 265/1030 atomic regions from SNP 79331 to 79931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,336 DEBUG Processing 356/909 atomic regions from SNP 106734 to 107334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,351 DEBUG Processing 357/864 atomic regions from SNP 106968 to 107568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,471 DEBUG Processing 121/653 atomic regions from SNP 36044 to 36644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,505 DEBUG Processing 251/1139 atomic regions from SNP 75152 to 75752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,516 DEBUG Processing 320/480 atomic regions from SNP 95705 to 96305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:12,546 DEBUG Processing 266/1030 atomic regions from SNP 79631 to 80231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,574 DEBUG Processing 357/909 atomic regions from SNP 107034 to 107634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,592 DEBUG Processing 358/864 atomic regions from SNP 107268 to 107868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,686 DEBUG Processing 122/653 atomic regions from SNP 36344 to 36944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,745 DEBUG Processing 321/480 atomic regions from SNP 96005 to 96605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:12,754 DEBUG Processing 252/1139 atomic regions from SNP 75452 to 76052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,793 DEBUG Processing 267/1030 atomic regions from SNP 79931 to 80531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,825 DEBUG Processing 358/909 atomic regions from SNP 107334 to 107934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,834 DEBUG Processing 359/864 atomic regions from SNP 107568 to 108168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,902 DEBUG Processing 123/653 atomic regions from SNP 36644 to 37244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,975 DEBUG Processing 322/480 atomic regions from SNP 96305 to 96905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:13,005 DEBUG Processing 253/1139 atomic regions from SNP 75752 to 76352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,041 DEBUG Processing 268/1030 atomic regions from SNP 80231 to 80831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,049 DEBUG Processing 359/909 atomic regions from SNP 107634 to 108234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,054 DEBUG Processing 360/864 atomic regions from SNP 107868 to 108468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,119 DEBUG Processing 124/653 atomic regions from SNP 36944 to 37544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,206 DEBUG Processing 323/480 atomic regions from SNP 96605 to 97205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:13,259 DEBUG Processing 254/1139 atomic regions from SNP 76052 to 76652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,274 DEBUG Processing 361/864 atomic regions from SNP 108168 to 108768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,275 DEBUG Processing 360/909 atomic regions from SNP 107934 to 108534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,288 DEBUG Processing 269/1030 atomic regions from SNP 80531 to 81131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,336 DEBUG Processing 125/653 atomic regions from SNP 37244 to 37844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,436 DEBUG Processing 324/480 atomic regions from SNP 96905 to 97505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:13,495 DEBUG Processing 362/864 atomic regions from SNP 108468 to 109068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,502 DEBUG Processing 361/909 atomic regions from SNP 108234 to 108834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,514 DEBUG Processing 255/1139 atomic regions from SNP 76352 to 76952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,531 DEBUG Processing 270/1030 atomic regions from SNP 80831 to 81431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,549 DEBUG Processing 126/653 atomic regions from SNP 37544 to 38144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,646 DEBUG Processing 325/480 atomic regions from SNP 97205 to 97805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:13,714 DEBUG Processing 363/864 atomic regions from SNP 108768 to 109368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,727 DEBUG Processing 362/909 atomic regions from SNP 108534 to 109134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,764 DEBUG Processing 127/653 atomic regions from SNP 37844 to 38444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,768 DEBUG Processing 256/1139 atomic regions from SNP 76652 to 77252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,771 DEBUG Processing 271/1030 atomic regions from SNP 81131 to 81731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,854 DEBUG Processing 326/480 atomic regions from SNP 97505 to 98105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:13,932 DEBUG Processing 364/864 atomic regions from SNP 109068 to 109668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,953 DEBUG Processing 363/909 atomic regions from SNP 108834 to 109434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,980 DEBUG Processing 128/653 atomic regions from SNP 38144 to 38744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,012 DEBUG Processing 272/1030 atomic regions from SNP 81431 to 82031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,016 DEBUG Processing 257/1139 atomic regions from SNP 76952 to 77552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,060 DEBUG Processing 327/480 atomic regions from SNP 97805 to 98405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:14,148 DEBUG Processing 365/864 atomic regions from SNP 109368 to 109968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,181 DEBUG Processing 364/909 atomic regions from SNP 109134 to 109734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,205 DEBUG Processing 129/653 atomic regions from SNP 38444 to 39044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,261 DEBUG Processing 273/1030 atomic regions from SNP 81731 to 82331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,274 DEBUG Processing 258/1139 atomic regions from SNP 77252 to 77852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,276 DEBUG Processing 328/480 atomic regions from SNP 98105 to 98705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:14,361 DEBUG Processing 366/864 atomic regions from SNP 109668 to 110268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,403 DEBUG Processing 365/909 atomic regions from SNP 109434 to 110034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,428 DEBUG Processing 130/653 atomic regions from SNP 38744 to 39344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,496 DEBUG Processing 329/480 atomic regions from SNP 98405 to 99005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:14,505 DEBUG Processing 274/1030 atomic regions from SNP 82031 to 82631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,525 DEBUG Processing 259/1139 atomic regions from SNP 77552 to 78152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,574 DEBUG Processing 367/864 atomic regions from SNP 109968 to 110568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,628 DEBUG Processing 366/909 atomic regions from SNP 109734 to 110334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,648 DEBUG Processing 131/653 atomic regions from SNP 39044 to 39644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,714 DEBUG Processing 330/480 atomic regions from SNP 98705 to 99305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:14,756 DEBUG Processing 275/1030 atomic regions from SNP 82331 to 82931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,780 DEBUG Processing 260/1139 atomic regions from SNP 77852 to 78452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,788 DEBUG Processing 368/864 atomic regions from SNP 110268 to 110868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,863 DEBUG Processing 367/909 atomic regions from SNP 110034 to 110634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,864 DEBUG Processing 132/653 atomic regions from SNP 39344 to 39944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,925 DEBUG Processing 331/480 atomic regions from SNP 99005 to 99605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:14,999 DEBUG Processing 276/1030 atomic regions from SNP 82631 to 83231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,017 DEBUG Processing 369/864 atomic regions from SNP 110568 to 111168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,030 DEBUG Processing 261/1139 atomic regions from SNP 78152 to 78752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,078 DEBUG Processing 133/653 atomic regions from SNP 39644 to 40244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,081 DEBUG Processing 368/909 atomic regions from SNP 110334 to 110934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,134 DEBUG Processing 332/480 atomic regions from SNP 99305 to 99905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:15,231 DEBUG Processing 370/864 atomic regions from SNP 110868 to 111468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,242 DEBUG Processing 277/1030 atomic regions from SNP 82931 to 83531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,279 DEBUG Processing 262/1139 atomic regions from SNP 78452 to 79052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,292 DEBUG Processing 134/653 atomic regions from SNP 39944 to 40544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,302 DEBUG Processing 369/909 atomic regions from SNP 110634 to 111234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,342 DEBUG Processing 333/480 atomic regions from SNP 99605 to 100205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:15,446 DEBUG Processing 371/864 atomic regions from SNP 111168 to 111768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,485 DEBUG Processing 278/1030 atomic regions from SNP 83231 to 83831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,509 DEBUG Processing 135/653 atomic regions from SNP 40244 to 40844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,523 DEBUG Processing 370/909 atomic regions from SNP 110934 to 111534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,529 DEBUG Processing 263/1139 atomic regions from SNP 78752 to 79352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,547 DEBUG Processing 334/480 atomic regions from SNP 99905 to 100505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:15,680 DEBUG Processing 372/864 atomic regions from SNP 111468 to 112068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,726 DEBUG Processing 279/1030 atomic regions from SNP 83531 to 84131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,732 DEBUG Processing 136/653 atomic regions from SNP 40544 to 41144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,745 DEBUG Processing 371/909 atomic regions from SNP 111234 to 111834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,758 DEBUG Processing 335/480 atomic regions from SNP 100205 to 100805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:15,780 DEBUG Processing 264/1139 atomic regions from SNP 79052 to 79652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,895 DEBUG Processing 373/864 atomic regions from SNP 111768 to 112368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,954 DEBUG Processing 137/653 atomic regions from SNP 40844 to 41444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,970 DEBUG Processing 336/480 atomic regions from SNP 100505 to 101105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:15,972 DEBUG Processing 372/909 atomic regions from SNP 111534 to 112134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,978 DEBUG Processing 280/1030 atomic regions from SNP 83831 to 84431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,030 DEBUG Processing 265/1139 atomic regions from SNP 79352 to 79952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,107 DEBUG Processing 374/864 atomic regions from SNP 112068 to 112668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,174 DEBUG Processing 138/653 atomic regions from SNP 41144 to 41744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,180 DEBUG Processing 337/480 atomic regions from SNP 100805 to 101405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:16,194 DEBUG Processing 373/909 atomic regions from SNP 111834 to 112434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,230 DEBUG Processing 281/1030 atomic regions from SNP 84131 to 84731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,278 DEBUG Processing 266/1139 atomic regions from SNP 79652 to 80252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,318 DEBUG Processing 375/864 atomic regions from SNP 112368 to 112968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,387 DEBUG Processing 338/480 atomic regions from SNP 101105 to 101705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:16,392 DEBUG Processing 139/653 atomic regions from SNP 41444 to 42044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,418 DEBUG Processing 374/909 atomic regions from SNP 112134 to 112734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,472 DEBUG Processing 282/1030 atomic regions from SNP 84431 to 85031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,527 DEBUG Processing 267/1139 atomic regions from SNP 79952 to 80552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,528 DEBUG Processing 376/864 atomic regions from SNP 112668 to 113268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,595 DEBUG Processing 339/480 atomic regions from SNP 101405 to 102005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:16,612 DEBUG Processing 140/653 atomic regions from SNP 41744 to 42344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,647 DEBUG Processing 375/909 atomic regions from SNP 112434 to 113034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,710 DEBUG Processing 283/1030 atomic regions from SNP 84731 to 85331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,739 DEBUG Processing 377/864 atomic regions from SNP 112968 to 113568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,776 DEBUG Processing 268/1139 atomic regions from SNP 80252 to 80852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,803 DEBUG Processing 340/480 atomic regions from SNP 101705 to 102305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:16,829 DEBUG Processing 141/653 atomic regions from SNP 42044 to 42644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,885 DEBUG Processing 376/909 atomic regions from SNP 112734 to 113334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,949 DEBUG Processing 284/1030 atomic regions from SNP 85031 to 85631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,951 DEBUG Processing 378/864 atomic regions from SNP 113268 to 113868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,011 DEBUG Processing 341/480 atomic regions from SNP 102005 to 102605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:17,024 DEBUG Processing 269/1139 atomic regions from SNP 80552 to 81152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,046 DEBUG Processing 142/653 atomic regions from SNP 42344 to 42944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,124 DEBUG Processing 377/909 atomic regions from SNP 113034 to 113634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,163 DEBUG Processing 379/864 atomic regions from SNP 113568 to 114168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,188 DEBUG Processing 285/1030 atomic regions from SNP 85331 to 85931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,221 DEBUG Processing 342/480 atomic regions from SNP 102305 to 102905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:17,261 DEBUG Processing 143/653 atomic regions from SNP 42644 to 43244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,271 DEBUG Processing 270/1139 atomic regions from SNP 80852 to 81452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,364 DEBUG Processing 378/909 atomic regions from SNP 113334 to 113934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,375 DEBUG Processing 380/864 atomic regions from SNP 113868 to 114468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,427 DEBUG Processing 286/1030 atomic regions from SNP 85631 to 86231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,429 DEBUG Processing 343/480 atomic regions from SNP 102605 to 103205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:17,478 DEBUG Processing 144/653 atomic regions from SNP 42944 to 43544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,518 DEBUG Processing 271/1139 atomic regions from SNP 81152 to 81752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,583 DEBUG Processing 379/909 atomic regions from SNP 113634 to 114234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,587 DEBUG Processing 381/864 atomic regions from SNP 114168 to 114768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,637 DEBUG Processing 344/480 atomic regions from SNP 102905 to 103505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:17,666 DEBUG Processing 287/1030 atomic regions from SNP 85931 to 86531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,695 DEBUG Processing 145/653 atomic regions from SNP 43244 to 43844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,768 DEBUG Processing 272/1139 atomic regions from SNP 81452 to 82052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,800 DEBUG Processing 382/864 atomic regions from SNP 114468 to 115068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,809 DEBUG Processing 380/909 atomic regions from SNP 113934 to 114534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,846 DEBUG Processing 345/480 atomic regions from SNP 103205 to 103805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:17,905 DEBUG Processing 288/1030 atomic regions from SNP 86231 to 86831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,910 DEBUG Processing 146/653 atomic regions from SNP 43544 to 44144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,014 DEBUG Processing 383/864 atomic regions from SNP 114768 to 115368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,016 DEBUG Processing 273/1139 atomic regions from SNP 81752 to 82352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,032 DEBUG Processing 381/909 atomic regions from SNP 114234 to 114834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,075 DEBUG Processing 346/480 atomic regions from SNP 103505 to 104105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:18,124 DEBUG Processing 147/653 atomic regions from SNP 43844 to 44444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,142 DEBUG Processing 289/1030 atomic regions from SNP 86531 to 87131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,228 DEBUG Processing 384/864 atomic regions from SNP 115068 to 115668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,255 DEBUG Processing 382/909 atomic regions from SNP 114534 to 115134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,265 DEBUG Processing 274/1139 atomic regions from SNP 82052 to 82652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,312 DEBUG Processing 347/480 atomic regions from SNP 103805 to 104405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:18,337 DEBUG Processing 148/653 atomic regions from SNP 44144 to 44744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,381 DEBUG Processing 290/1030 atomic regions from SNP 86831 to 87431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,441 DEBUG Processing 385/864 atomic regions from SNP 115368 to 115968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,475 DEBUG Processing 383/909 atomic regions from SNP 114834 to 115434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,515 DEBUG Processing 275/1139 atomic regions from SNP 82352 to 82952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,550 DEBUG Processing 348/480 atomic regions from SNP 104105 to 104705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:18,556 DEBUG Processing 149/653 atomic regions from SNP 44444 to 45044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,620 DEBUG Processing 291/1030 atomic regions from SNP 87131 to 87731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,650 DEBUG Processing 386/864 atomic regions from SNP 115668 to 116268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,695 DEBUG Processing 384/909 atomic regions from SNP 115134 to 115734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,762 DEBUG Processing 276/1139 atomic regions from SNP 82652 to 83252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,776 DEBUG Processing 150/653 atomic regions from SNP 44744 to 45344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,787 DEBUG Processing 349/480 atomic regions from SNP 104405 to 105005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:18,862 DEBUG Processing 292/1030 atomic regions from SNP 87431 to 88031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,862 DEBUG Processing 387/864 atomic regions from SNP 115968 to 116568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,913 DEBUG Processing 385/909 atomic regions from SNP 115434 to 116034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,994 DEBUG Processing 151/653 atomic regions from SNP 45044 to 45644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,010 DEBUG Processing 277/1139 atomic regions from SNP 82952 to 83552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,012 DEBUG Processing 350/480 atomic regions from SNP 104705 to 105305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:19,077 DEBUG Processing 388/864 atomic regions from SNP 116268 to 116868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,101 DEBUG Processing 293/1030 atomic regions from SNP 87731 to 88331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,132 DEBUG Processing 386/909 atomic regions from SNP 115734 to 116334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,211 DEBUG Processing 152/653 atomic regions from SNP 45344 to 45944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,220 DEBUG Processing 351/480 atomic regions from SNP 105005 to 105605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:19,259 DEBUG Processing 278/1139 atomic regions from SNP 83252 to 83852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,293 DEBUG Processing 389/864 atomic regions from SNP 116568 to 117168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,339 DEBUG Processing 294/1030 atomic regions from SNP 88031 to 88631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,350 DEBUG Processing 387/909 atomic regions from SNP 116034 to 116634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,427 DEBUG Processing 352/480 atomic regions from SNP 105305 to 105905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:19,432 DEBUG Processing 153/653 atomic regions from SNP 45644 to 46244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,508 DEBUG Processing 390/864 atomic regions from SNP 116868 to 117468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,509 DEBUG Processing 279/1139 atomic regions from SNP 83552 to 84152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,570 DEBUG Processing 388/909 atomic regions from SNP 116334 to 116934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,580 DEBUG Processing 295/1030 atomic regions from SNP 88331 to 88931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,633 DEBUG Processing 353/480 atomic regions from SNP 105605 to 106205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:19,648 DEBUG Processing 154/653 atomic regions from SNP 45944 to 46544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,722 DEBUG Processing 391/864 atomic regions from SNP 117168 to 117768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,758 DEBUG Processing 280/1139 atomic regions from SNP 83852 to 84452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,791 DEBUG Processing 389/909 atomic regions from SNP 116634 to 117234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,820 DEBUG Processing 296/1030 atomic regions from SNP 88631 to 89231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,840 DEBUG Processing 354/480 atomic regions from SNP 105905 to 106505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:19,864 DEBUG Processing 155/653 atomic regions from SNP 46244 to 46844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,933 DEBUG Processing 392/864 atomic regions from SNP 117468 to 118068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,007 DEBUG Processing 281/1139 atomic regions from SNP 84152 to 84752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,013 DEBUG Processing 390/909 atomic regions from SNP 116934 to 117534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,059 DEBUG Processing 297/1030 atomic regions from SNP 88931 to 89531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,065 DEBUG Processing 355/480 atomic regions from SNP 106205 to 106805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:20,082 DEBUG Processing 156/653 atomic regions from SNP 46544 to 47144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,142 DEBUG Processing 393/864 atomic regions from SNP 117768 to 118368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,235 DEBUG Processing 391/909 atomic regions from SNP 117234 to 117834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,254 DEBUG Processing 282/1139 atomic regions from SNP 84452 to 85052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,292 DEBUG Processing 356/480 atomic regions from SNP 106505 to 107105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:20,302 DEBUG Processing 298/1030 atomic regions from SNP 89231 to 89831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,302 DEBUG Processing 157/653 atomic regions from SNP 46844 to 47444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,353 DEBUG Processing 394/864 atomic regions from SNP 118068 to 118668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,452 DEBUG Processing 392/909 atomic regions from SNP 117534 to 118134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,502 DEBUG Processing 283/1139 atomic regions from SNP 84752 to 85352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,521 DEBUG Processing 357/480 atomic regions from SNP 106805 to 107405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:20,524 DEBUG Processing 158/653 atomic regions from SNP 47144 to 47744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,544 DEBUG Processing 299/1030 atomic regions from SNP 89531 to 90131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,567 DEBUG Processing 395/864 atomic regions from SNP 118368 to 118968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,666 DEBUG Processing 393/909 atomic regions from SNP 117834 to 118434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,731 DEBUG Processing 358/480 atomic regions from SNP 107105 to 107705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:20,742 DEBUG Processing 159/653 atomic regions from SNP 47444 to 48044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,750 DEBUG Processing 284/1139 atomic regions from SNP 85052 to 85652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,783 DEBUG Processing 396/864 atomic regions from SNP 118668 to 119268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,785 DEBUG Processing 300/1030 atomic regions from SNP 89831 to 90431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,885 DEBUG Processing 394/909 atomic regions from SNP 118134 to 118734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,953 DEBUG Processing 359/480 atomic regions from SNP 107405 to 108005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:20,959 DEBUG Processing 160/653 atomic regions from SNP 47744 to 48344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,997 DEBUG Processing 397/864 atomic regions from SNP 118968 to 119568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,009 DEBUG Processing 285/1139 atomic regions from SNP 85352 to 85952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,027 DEBUG Processing 301/1030 atomic regions from SNP 90131 to 90731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,105 DEBUG Processing 395/909 atomic regions from SNP 118434 to 119034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,179 DEBUG Processing 161/653 atomic regions from SNP 48044 to 48644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,195 DEBUG Processing 360/480 atomic regions from SNP 107705 to 108305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:21,212 DEBUG Processing 398/864 atomic regions from SNP 119268 to 119868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,269 DEBUG Processing 302/1030 atomic regions from SNP 90431 to 91031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,294 DEBUG Processing 286/1139 atomic regions from SNP 85652 to 86252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,324 DEBUG Processing 396/909 atomic regions from SNP 118734 to 119334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,390 DEBUG Processing 162/653 atomic regions from SNP 48344 to 48944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,425 DEBUG Processing 399/864 atomic regions from SNP 119568 to 120168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,428 DEBUG Processing 361/480 atomic regions from SNP 108005 to 108605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:21,511 DEBUG Processing 303/1030 atomic regions from SNP 90731 to 91331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,544 DEBUG Processing 397/909 atomic regions from SNP 119034 to 119634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,566 DEBUG Processing 287/1139 atomic regions from SNP 85952 to 86552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,605 DEBUG Processing 163/653 atomic regions from SNP 48644 to 49244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,637 DEBUG Processing 400/864 atomic regions from SNP 119868 to 120468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,650 DEBUG Processing 362/480 atomic regions from SNP 108305 to 108905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:21,749 DEBUG Processing 304/1030 atomic regions from SNP 91031 to 91631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,764 DEBUG Processing 398/909 atomic regions from SNP 119334 to 119934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,822 DEBUG Processing 164/653 atomic regions from SNP 48944 to 49544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,836 DEBUG Processing 288/1139 atomic regions from SNP 86252 to 86852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,872 DEBUG Processing 401/864 atomic regions from SNP 120168 to 120768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,877 DEBUG Processing 363/480 atomic regions from SNP 108605 to 109205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:21,984 DEBUG Processing 399/909 atomic regions from SNP 119634 to 120234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,989 DEBUG Processing 305/1030 atomic regions from SNP 91331 to 91931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,037 DEBUG Processing 165/653 atomic regions from SNP 49244 to 49844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,097 DEBUG Processing 289/1139 atomic regions from SNP 86552 to 87152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,100 DEBUG Processing 402/864 atomic regions from SNP 120468 to 121068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,108 DEBUG Processing 364/480 atomic regions from SNP 108905 to 109505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:22,204 DEBUG Processing 400/909 atomic regions from SNP 119934 to 120534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,225 DEBUG Processing 306/1030 atomic regions from SNP 91631 to 92231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,253 DEBUG Processing 166/653 atomic regions from SNP 49544 to 50144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,333 DEBUG Processing 403/864 atomic regions from SNP 120768 to 121368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,346 DEBUG Processing 365/480 atomic regions from SNP 109205 to 109805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:22,356 DEBUG Processing 290/1139 atomic regions from SNP 86852 to 87452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,426 DEBUG Processing 401/909 atomic regions from SNP 120234 to 120834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,461 DEBUG Processing 307/1030 atomic regions from SNP 91931 to 92531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,468 DEBUG Processing 167/653 atomic regions from SNP 49844 to 50444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,566 DEBUG Processing 404/864 atomic regions from SNP 121068 to 121668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,582 DEBUG Processing 366/480 atomic regions from SNP 109505 to 110105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:22,609 DEBUG Processing 291/1139 atomic regions from SNP 87152 to 87752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,646 DEBUG Processing 402/909 atomic regions from SNP 120534 to 121134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,684 DEBUG Processing 168/653 atomic regions from SNP 50144 to 50744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,699 DEBUG Processing 308/1030 atomic regions from SNP 92231 to 92831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,796 DEBUG Processing 405/864 atomic regions from SNP 121368 to 121968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,798 DEBUG Processing 367/480 atomic regions from SNP 109805 to 110405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:22,867 DEBUG Processing 292/1139 atomic regions from SNP 87452 to 88052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,868 DEBUG Processing 403/909 atomic regions from SNP 120834 to 121434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,901 DEBUG Processing 169/653 atomic regions from SNP 50444 to 51044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,938 DEBUG Processing 309/1030 atomic regions from SNP 92531 to 93131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,008 DEBUG Processing 406/864 atomic regions from SNP 121668 to 122268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,009 DEBUG Processing 368/480 atomic regions from SNP 110105 to 110705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:23,088 DEBUG Processing 404/909 atomic regions from SNP 121134 to 121734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,118 DEBUG Processing 170/653 atomic regions from SNP 50744 to 51344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,123 DEBUG Processing 293/1139 atomic regions from SNP 87752 to 88352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,178 DEBUG Processing 310/1030 atomic regions from SNP 92831 to 93431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,221 DEBUG Processing 407/864 atomic regions from SNP 121968 to 122568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,225 DEBUG Processing 369/480 atomic regions from SNP 110405 to 111005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:23,308 DEBUG Processing 405/909 atomic regions from SNP 121434 to 122034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,335 DEBUG Processing 171/653 atomic regions from SNP 51044 to 51644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,371 DEBUG Processing 294/1139 atomic regions from SNP 88052 to 88652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,420 DEBUG Processing 311/1030 atomic regions from SNP 93131 to 93731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,434 DEBUG Processing 370/480 atomic regions from SNP 110705 to 111305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:23,453 DEBUG Processing 408/864 atomic regions from SNP 122268 to 122868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,526 DEBUG Processing 406/909 atomic regions from SNP 121734 to 122334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,548 DEBUG Processing 172/653 atomic regions from SNP 51344 to 51944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,621 DEBUG Processing 295/1139 atomic regions from SNP 88352 to 88952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,646 DEBUG Processing 371/480 atomic regions from SNP 111005 to 111605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:23,663 DEBUG Processing 312/1030 atomic regions from SNP 93431 to 94031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,686 DEBUG Processing 409/864 atomic regions from SNP 122568 to 123168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,745 DEBUG Processing 407/909 atomic regions from SNP 122034 to 122634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,760 DEBUG Processing 173/653 atomic regions from SNP 51644 to 52244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,872 DEBUG Processing 296/1139 atomic regions from SNP 88652 to 89252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,884 DEBUG Processing 372/480 atomic regions from SNP 111305 to 111905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:23,903 DEBUG Processing 410/864 atomic regions from SNP 122868 to 123468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,905 DEBUG Processing 313/1030 atomic regions from SNP 93731 to 94331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,964 DEBUG Processing 408/909 atomic regions from SNP 122334 to 122934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,974 DEBUG Processing 174/653 atomic regions from SNP 51944 to 52544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,121 DEBUG Processing 411/864 atomic regions from SNP 123168 to 123768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,125 DEBUG Processing 297/1139 atomic regions from SNP 88952 to 89552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,128 DEBUG Processing 373/480 atomic regions from SNP 111605 to 112205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:24,149 DEBUG Processing 314/1030 atomic regions from SNP 94031 to 94631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,185 DEBUG Processing 409/909 atomic regions from SNP 122634 to 123234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,190 DEBUG Processing 175/653 atomic regions from SNP 52244 to 52844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,340 DEBUG Processing 412/864 atomic regions from SNP 123468 to 124068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,363 DEBUG Processing 374/480 atomic regions from SNP 111905 to 112505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:24,382 DEBUG Processing 298/1139 atomic regions from SNP 89252 to 89852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,393 DEBUG Processing 315/1030 atomic regions from SNP 94331 to 94931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,409 DEBUG Processing 410/909 atomic regions from SNP 122934 to 123534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,410 DEBUG Processing 176/653 atomic regions from SNP 52544 to 53144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,556 DEBUG Processing 413/864 atomic regions from SNP 123768 to 124368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,585 DEBUG Processing 375/480 atomic regions from SNP 112205 to 112805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:24,629 DEBUG Processing 177/653 atomic regions from SNP 52844 to 53444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,633 DEBUG Processing 411/909 atomic regions from SNP 123234 to 123834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,635 DEBUG Processing 316/1030 atomic regions from SNP 94631 to 95231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,637 DEBUG Processing 299/1139 atomic regions from SNP 89552 to 90152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,769 DEBUG Processing 414/864 atomic regions from SNP 124068 to 124668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,800 DEBUG Processing 376/480 atomic regions from SNP 112505 to 113105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:24,849 DEBUG Processing 178/653 atomic regions from SNP 53144 to 53744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,859 DEBUG Processing 412/909 atomic regions from SNP 123534 to 124134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,879 DEBUG Processing 317/1030 atomic regions from SNP 94931 to 95531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,891 DEBUG Processing 300/1139 atomic regions from SNP 89852 to 90452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,983 DEBUG Processing 415/864 atomic regions from SNP 124368 to 124968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,009 DEBUG Processing 377/480 atomic regions from SNP 112805 to 113405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:25,066 DEBUG Processing 179/653 atomic regions from SNP 53444 to 54044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,084 DEBUG Processing 413/909 atomic regions from SNP 123834 to 124434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,122 DEBUG Processing 318/1030 atomic regions from SNP 95231 to 95831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,145 DEBUG Processing 301/1139 atomic regions from SNP 90152 to 90752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,197 DEBUG Processing 416/864 atomic regions from SNP 124668 to 125268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,216 DEBUG Processing 378/480 atomic regions from SNP 113105 to 113705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:25,282 DEBUG Processing 180/653 atomic regions from SNP 53744 to 54344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,305 DEBUG Processing 414/909 atomic regions from SNP 124134 to 124734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,363 DEBUG Processing 319/1030 atomic regions from SNP 95531 to 96131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,398 DEBUG Processing 302/1139 atomic regions from SNP 90452 to 91052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,411 DEBUG Processing 417/864 atomic regions from SNP 124968 to 125568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,426 DEBUG Processing 379/480 atomic regions from SNP 113405 to 114005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:25,497 DEBUG Processing 181/653 atomic regions from SNP 54044 to 54644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,526 DEBUG Processing 415/909 atomic regions from SNP 124434 to 125034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,607 DEBUG Processing 320/1030 atomic regions from SNP 95831 to 96431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,626 DEBUG Processing 418/864 atomic regions from SNP 125268 to 125868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,635 DEBUG Processing 380/480 atomic regions from SNP 113705 to 114305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:25,675 DEBUG Processing 303/1139 atomic regions from SNP 90752 to 91352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,713 DEBUG Processing 182/653 atomic regions from SNP 54344 to 54944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,747 DEBUG Processing 416/909 atomic regions from SNP 124734 to 125334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,841 DEBUG Processing 419/864 atomic regions from SNP 125568 to 126168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,848 DEBUG Processing 321/1030 atomic regions from SNP 96131 to 96731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,857 DEBUG Processing 381/480 atomic regions from SNP 114005 to 114605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:25,931 DEBUG Processing 183/653 atomic regions from SNP 54644 to 55244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,957 DEBUG Processing 304/1139 atomic regions from SNP 91052 to 91652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,967 DEBUG Processing 417/909 atomic regions from SNP 125034 to 125634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,057 DEBUG Processing 420/864 atomic regions from SNP 125868 to 126468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,090 DEBUG Processing 382/480 atomic regions from SNP 114305 to 114905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:26,091 DEBUG Processing 322/1030 atomic regions from SNP 96431 to 97031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,149 DEBUG Processing 184/653 atomic regions from SNP 54944 to 55544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,189 DEBUG Processing 418/909 atomic regions from SNP 125334 to 125934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,218 DEBUG Processing 305/1139 atomic regions from SNP 91352 to 91952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,270 DEBUG Processing 421/864 atomic regions from SNP 126168 to 126768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,302 DEBUG Processing 383/480 atomic regions from SNP 114605 to 115205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:26,355 DEBUG Processing 323/1030 atomic regions from SNP 96731 to 97331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,369 DEBUG Processing 185/653 atomic regions from SNP 55244 to 55844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,411 DEBUG Processing 419/909 atomic regions from SNP 125634 to 126234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,468 DEBUG Processing 306/1139 atomic regions from SNP 91652 to 92252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,489 DEBUG Processing 422/864 atomic regions from SNP 126468 to 127068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,511 DEBUG Processing 384/480 atomic regions from SNP 114905 to 115505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:26,588 DEBUG Processing 186/653 atomic regions from SNP 55544 to 56144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,610 DEBUG Processing 324/1030 atomic regions from SNP 97031 to 97631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,635 DEBUG Processing 420/909 atomic regions from SNP 125934 to 126534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,704 DEBUG Processing 423/864 atomic regions from SNP 126768 to 127368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,717 DEBUG Processing 307/1139 atomic regions from SNP 91952 to 92552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,721 DEBUG Processing 385/480 atomic regions from SNP 115205 to 115805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:26,805 DEBUG Processing 187/653 atomic regions from SNP 55844 to 56444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,847 DEBUG Processing 325/1030 atomic regions from SNP 97331 to 97931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,859 DEBUG Processing 421/909 atomic regions from SNP 126234 to 126834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,921 DEBUG Processing 424/864 atomic regions from SNP 127068 to 127668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,939 DEBUG Processing 386/480 atomic regions from SNP 115505 to 116105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:26,969 DEBUG Processing 308/1139 atomic regions from SNP 92252 to 92852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,023 DEBUG Processing 188/653 atomic regions from SNP 56144 to 56744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,082 DEBUG Processing 422/909 atomic regions from SNP 126534 to 127134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,087 DEBUG Processing 326/1030 atomic regions from SNP 97631 to 98231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,143 DEBUG Processing 425/864 atomic regions from SNP 127368 to 127968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,176 DEBUG Processing 387/480 atomic regions from SNP 115805 to 116405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:27,218 DEBUG Processing 309/1139 atomic regions from SNP 92552 to 93152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,239 DEBUG Processing 189/653 atomic regions from SNP 56444 to 57044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,306 DEBUG Processing 423/909 atomic regions from SNP 126834 to 127434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,328 DEBUG Processing 327/1030 atomic regions from SNP 97931 to 98531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,379 DEBUG Processing 426/864 atomic regions from SNP 127668 to 128268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,414 DEBUG Processing 388/480 atomic regions from SNP 116105 to 116705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:27,457 DEBUG Processing 190/653 atomic regions from SNP 56744 to 57344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,467 DEBUG Processing 310/1139 atomic regions from SNP 92852 to 93452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,529 DEBUG Processing 424/909 atomic regions from SNP 127134 to 127734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,572 DEBUG Processing 328/1030 atomic regions from SNP 98231 to 98831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,620 DEBUG Processing 427/864 atomic regions from SNP 127968 to 128568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,632 DEBUG Processing 389/480 atomic regions from SNP 116405 to 117005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:27,674 DEBUG Processing 191/653 atomic regions from SNP 57044 to 57644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,716 DEBUG Processing 311/1139 atomic regions from SNP 93152 to 93752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,753 DEBUG Processing 425/909 atomic regions from SNP 127434 to 128034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,813 DEBUG Processing 329/1030 atomic regions from SNP 98531 to 99131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,838 DEBUG Processing 390/480 atomic regions from SNP 116705 to 117305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:27,858 DEBUG Processing 428/864 atomic regions from SNP 128268 to 128868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,889 DEBUG Processing 192/653 atomic regions from SNP 57344 to 57944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,968 DEBUG Processing 312/1139 atomic regions from SNP 93452 to 94052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,977 DEBUG Processing 426/909 atomic regions from SNP 127734 to 128334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,046 DEBUG Processing 391/480 atomic regions from SNP 117005 to 117605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:28,054 DEBUG Processing 330/1030 atomic regions from SNP 98831 to 99431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,085 DEBUG Processing 429/864 atomic regions from SNP 128568 to 129168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,104 DEBUG Processing 193/653 atomic regions from SNP 57644 to 58244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,201 DEBUG Processing 427/909 atomic regions from SNP 128034 to 128634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,220 DEBUG Processing 313/1139 atomic regions from SNP 93752 to 94352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,255 DEBUG Processing 392/480 atomic regions from SNP 117305 to 117905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:28,295 DEBUG Processing 331/1030 atomic regions from SNP 99131 to 99731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,297 DEBUG Processing 430/864 atomic regions from SNP 128868 to 129468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,318 DEBUG Processing 194/653 atomic regions from SNP 57944 to 58544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,426 DEBUG Processing 428/909 atomic regions from SNP 128334 to 128934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,470 DEBUG Processing 393/480 atomic regions from SNP 117605 to 118205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:28,474 DEBUG Processing 314/1139 atomic regions from SNP 94052 to 94652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,512 DEBUG Processing 431/864 atomic regions from SNP 129168 to 129768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,534 DEBUG Processing 195/653 atomic regions from SNP 58244 to 58844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,538 DEBUG Processing 332/1030 atomic regions from SNP 99431 to 100031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,648 DEBUG Processing 429/909 atomic regions from SNP 128634 to 129234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,680 DEBUG Processing 394/480 atomic regions from SNP 117905 to 118505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:28,724 DEBUG Processing 315/1139 atomic regions from SNP 94352 to 94952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,727 DEBUG Processing 432/864 atomic regions from SNP 129468 to 130068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,752 DEBUG Processing 196/653 atomic regions from SNP 58544 to 59144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,779 DEBUG Processing 333/1030 atomic regions from SNP 99731 to 100331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,869 DEBUG Processing 430/909 atomic regions from SNP 128934 to 129534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,889 DEBUG Processing 395/480 atomic regions from SNP 118205 to 118805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:28,945 DEBUG Processing 433/864 atomic regions from SNP 129768 to 130368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,973 DEBUG Processing 197/653 atomic regions from SNP 58844 to 59444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,976 DEBUG Processing 316/1139 atomic regions from SNP 94652 to 95252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,020 DEBUG Processing 334/1030 atomic regions from SNP 100031 to 100631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,089 DEBUG Processing 431/909 atomic regions from SNP 129234 to 129834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,095 DEBUG Processing 396/480 atomic regions from SNP 118505 to 119105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:29,159 DEBUG Processing 434/864 atomic regions from SNP 130068 to 130668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,192 DEBUG Processing 198/653 atomic regions from SNP 59144 to 59744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,226 DEBUG Processing 317/1139 atomic regions from SNP 94952 to 95552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,262 DEBUG Processing 335/1030 atomic regions from SNP 100331 to 100931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,301 DEBUG Processing 397/480 atomic regions from SNP 118805 to 119405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:29,310 DEBUG Processing 432/909 atomic regions from SNP 129534 to 130134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,372 DEBUG Processing 435/864 atomic regions from SNP 130368 to 130968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,409 DEBUG Processing 199/653 atomic regions from SNP 59444 to 60044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,478 DEBUG Processing 318/1139 atomic regions from SNP 95252 to 95852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,504 DEBUG Processing 336/1030 atomic regions from SNP 100631 to 101231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,509 DEBUG Processing 398/480 atomic regions from SNP 119105 to 119705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:29,531 DEBUG Processing 433/909 atomic regions from SNP 129834 to 130434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,584 DEBUG Processing 436/864 atomic regions from SNP 130668 to 131268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,624 DEBUG Processing 200/653 atomic regions from SNP 59744 to 60344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,721 DEBUG Processing 399/480 atomic regions from SNP 119405 to 120005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:29,728 DEBUG Processing 319/1139 atomic regions from SNP 95552 to 96152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,748 DEBUG Processing 337/1030 atomic regions from SNP 100931 to 101531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,754 DEBUG Processing 434/909 atomic regions from SNP 130134 to 130734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,799 DEBUG Processing 437/864 atomic regions from SNP 130968 to 131568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,838 DEBUG Processing 201/653 atomic regions from SNP 60044 to 60644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,935 DEBUG Processing 400/480 atomic regions from SNP 119705 to 120305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:29,980 DEBUG Processing 435/909 atomic regions from SNP 130434 to 131034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,983 DEBUG Processing 320/1139 atomic regions from SNP 95852 to 96452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,993 DEBUG Processing 338/1030 atomic regions from SNP 101231 to 101831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,013 DEBUG Processing 438/864 atomic regions from SNP 131268 to 131868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,053 DEBUG Processing 202/653 atomic regions from SNP 60344 to 60944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,146 DEBUG Processing 401/480 atomic regions from SNP 120005 to 120605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:30,230 DEBUG Processing 439/864 atomic regions from SNP 131568 to 132168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,232 DEBUG Processing 436/909 atomic regions from SNP 130734 to 131334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,239 DEBUG Processing 321/1139 atomic regions from SNP 96152 to 96752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,250 DEBUG Processing 339/1030 atomic regions from SNP 101531 to 102131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,271 DEBUG Processing 203/653 atomic regions from SNP 60644 to 61244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,352 DEBUG Processing 402/480 atomic regions from SNP 120305 to 120905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:30,450 DEBUG Processing 440/864 atomic regions from SNP 131868 to 132468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,473 DEBUG Processing 437/909 atomic regions from SNP 131034 to 131634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,491 DEBUG Processing 204/653 atomic regions from SNP 60944 to 61544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,498 DEBUG Processing 340/1030 atomic regions from SNP 101831 to 102431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,500 DEBUG Processing 322/1139 atomic regions from SNP 96452 to 97052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,558 DEBUG Processing 403/480 atomic regions from SNP 120605 to 121205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:30,670 DEBUG Processing 441/864 atomic regions from SNP 132168 to 132768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,712 DEBUG Processing 205/653 atomic regions from SNP 61244 to 61844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,716 DEBUG Processing 438/909 atomic regions from SNP 131334 to 131934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,752 DEBUG Processing 341/1030 atomic regions from SNP 102131 to 102731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,765 DEBUG Processing 404/480 atomic regions from SNP 120905 to 121505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:30,769 DEBUG Processing 323/1139 atomic regions from SNP 96752 to 97352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,888 DEBUG Processing 442/864 atomic regions from SNP 132468 to 133068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,932 DEBUG Processing 206/653 atomic regions from SNP 61544 to 62144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,947 DEBUG Processing 439/909 atomic regions from SNP 131634 to 132234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,979 DEBUG Processing 405/480 atomic regions from SNP 121205 to 121805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:31,001 DEBUG Processing 342/1030 atomic regions from SNP 102431 to 103031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,046 DEBUG Processing 324/1139 atomic regions from SNP 97052 to 97652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,101 DEBUG Processing 443/864 atomic regions from SNP 132768 to 133368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,149 DEBUG Processing 207/653 atomic regions from SNP 61844 to 62444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,170 DEBUG Processing 440/909 atomic regions from SNP 131934 to 132534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,189 DEBUG Processing 406/480 atomic regions from SNP 121505 to 122105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:31,244 DEBUG Processing 343/1030 atomic regions from SNP 102731 to 103331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,314 DEBUG Processing 325/1139 atomic regions from SNP 97352 to 97952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,315 DEBUG Processing 444/864 atomic regions from SNP 133068 to 133668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,365 DEBUG Processing 208/653 atomic regions from SNP 62144 to 62744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,393 DEBUG Processing 441/909 atomic regions from SNP 132234 to 132834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,399 DEBUG Processing 407/480 atomic regions from SNP 121805 to 122405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:31,488 DEBUG Processing 344/1030 atomic regions from SNP 103031 to 103631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,533 DEBUG Processing 445/864 atomic regions from SNP 133368 to 133968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,582 DEBUG Processing 326/1139 atomic regions from SNP 97652 to 98252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,583 DEBUG Processing 209/653 atomic regions from SNP 62444 to 63044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,608 DEBUG Processing 408/480 atomic regions from SNP 122105 to 122705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:31,615 DEBUG Processing 442/909 atomic regions from SNP 132534 to 133134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,728 DEBUG Processing 345/1030 atomic regions from SNP 103331 to 103931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,748 DEBUG Processing 446/864 atomic regions from SNP 133668 to 134268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,798 DEBUG Processing 210/653 atomic regions from SNP 62744 to 63344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,816 DEBUG Processing 409/480 atomic regions from SNP 122405 to 123005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:31,839 DEBUG Processing 443/909 atomic regions from SNP 132834 to 133434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,853 DEBUG Processing 327/1139 atomic regions from SNP 97952 to 98552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,962 DEBUG Processing 447/864 atomic regions from SNP 133968 to 134568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,969 DEBUG Processing 346/1030 atomic regions from SNP 103631 to 104231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,017 DEBUG Processing 211/653 atomic regions from SNP 63044 to 63644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,026 DEBUG Processing 410/480 atomic regions from SNP 122705 to 123305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:32,060 DEBUG Processing 444/909 atomic regions from SNP 133134 to 133734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,128 DEBUG Processing 328/1139 atomic regions from SNP 98252 to 98852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,177 DEBUG Processing 448/864 atomic regions from SNP 134268 to 134868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,208 DEBUG Processing 347/1030 atomic regions from SNP 103931 to 104531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,234 DEBUG Processing 411/480 atomic regions from SNP 123005 to 123605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:32,235 DEBUG Processing 212/653 atomic regions from SNP 63344 to 63944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,281 DEBUG Processing 445/909 atomic regions from SNP 133434 to 134034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,391 DEBUG Processing 449/864 atomic regions from SNP 134568 to 135168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,410 DEBUG Processing 329/1139 atomic regions from SNP 98552 to 99152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,444 DEBUG Processing 412/480 atomic regions from SNP 123305 to 123905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:32,450 DEBUG Processing 348/1030 atomic regions from SNP 104231 to 104831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,454 DEBUG Processing 213/653 atomic regions from SNP 63644 to 64244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,504 DEBUG Processing 446/909 atomic regions from SNP 133734 to 134334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,606 DEBUG Processing 450/864 atomic regions from SNP 134868 to 135468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,665 DEBUG Processing 413/480 atomic regions from SNP 123605 to 124205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:32,672 DEBUG Processing 214/653 atomic regions from SNP 63944 to 64544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,693 DEBUG Processing 330/1139 atomic regions from SNP 98852 to 99452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,693 DEBUG Processing 349/1030 atomic regions from SNP 104531 to 105131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,726 DEBUG Processing 447/909 atomic regions from SNP 134034 to 134634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,821 DEBUG Processing 451/864 atomic regions from SNP 135168 to 135768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,890 DEBUG Processing 215/653 atomic regions from SNP 64244 to 64844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,895 DEBUG Processing 414/480 atomic regions from SNP 123905 to 124505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:32,938 DEBUG Processing 350/1030 atomic regions from SNP 104831 to 105431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,949 DEBUG Processing 448/909 atomic regions from SNP 134334 to 134934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,971 DEBUG Processing 331/1139 atomic regions from SNP 99152 to 99752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,033 DEBUG Processing 452/864 atomic regions from SNP 135468 to 136068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,103 DEBUG Processing 415/480 atomic regions from SNP 124205 to 124805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:33,106 DEBUG Processing 216/653 atomic regions from SNP 64544 to 65144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,172 DEBUG Processing 449/909 atomic regions from SNP 134634 to 135234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,182 DEBUG Processing 351/1030 atomic regions from SNP 105131 to 105731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,246 DEBUG Processing 332/1139 atomic regions from SNP 99452 to 100052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,246 DEBUG Processing 453/864 atomic regions from SNP 135768 to 136368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,310 DEBUG Processing 416/480 atomic regions from SNP 124505 to 125105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:33,324 DEBUG Processing 217/653 atomic regions from SNP 64844 to 65444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,395 DEBUG Processing 450/909 atomic regions from SNP 134934 to 135534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,424 DEBUG Processing 352/1030 atomic regions from SNP 105431 to 106031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,461 DEBUG Processing 454/864 atomic regions from SNP 136068 to 136668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,519 DEBUG Processing 417/480 atomic regions from SNP 124805 to 125405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:33,527 DEBUG Processing 333/1139 atomic regions from SNP 99752 to 100352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,541 DEBUG Processing 218/653 atomic regions from SNP 65144 to 65744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,615 DEBUG Processing 451/909 atomic regions from SNP 135234 to 135834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,668 DEBUG Processing 353/1030 atomic regions from SNP 105731 to 106331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,676 DEBUG Processing 455/864 atomic regions from SNP 136368 to 136968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,731 DEBUG Processing 418/480 atomic regions from SNP 125105 to 125705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:33,758 DEBUG Processing 219/653 atomic regions from SNP 65444 to 66044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,796 DEBUG Processing 334/1139 atomic regions from SNP 100052 to 100652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,834 DEBUG Processing 452/909 atomic regions from SNP 135534 to 136134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,892 DEBUG Processing 456/864 atomic regions from SNP 136668 to 137268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,909 DEBUG Processing 354/1030 atomic regions from SNP 106031 to 106631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,940 DEBUG Processing 419/480 atomic regions from SNP 125405 to 126005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:33,977 DEBUG Processing 220/653 atomic regions from SNP 65744 to 66344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,048 DEBUG Processing 335/1139 atomic regions from SNP 100352 to 100952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,063 DEBUG Processing 453/909 atomic regions from SNP 135834 to 136434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,108 DEBUG Processing 457/864 atomic regions from SNP 136968 to 137568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,148 DEBUG Processing 420/480 atomic regions from SNP 125705 to 126305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:34,152 DEBUG Processing 355/1030 atomic regions from SNP 106331 to 106931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,195 DEBUG Processing 221/653 atomic regions from SNP 66044 to 66644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,289 DEBUG Processing 454/909 atomic regions from SNP 136134 to 136734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,304 DEBUG Processing 336/1139 atomic regions from SNP 100652 to 101252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,327 DEBUG Processing 458/864 atomic regions from SNP 137268 to 137868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,363 DEBUG Processing 421/480 atomic regions from SNP 126005 to 126605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:34,407 DEBUG Processing 356/1030 atomic regions from SNP 106631 to 107231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,418 DEBUG Processing 222/653 atomic regions from SNP 66344 to 66944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,517 DEBUG Processing 455/909 atomic regions from SNP 136434 to 137034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,548 DEBUG Processing 459/864 atomic regions from SNP 137568 to 138168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,556 DEBUG Processing 337/1139 atomic regions from SNP 100952 to 101552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,574 DEBUG Processing 422/480 atomic regions from SNP 126305 to 126905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:34,635 DEBUG Processing 223/653 atomic regions from SNP 66644 to 67244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,647 DEBUG Processing 357/1030 atomic regions from SNP 106931 to 107531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,743 DEBUG Processing 456/909 atomic regions from SNP 136734 to 137334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,765 DEBUG Processing 460/864 atomic regions from SNP 137868 to 138468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,785 DEBUG Processing 423/480 atomic regions from SNP 126605 to 127205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:34,808 DEBUG Processing 338/1139 atomic regions from SNP 101252 to 101852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,851 DEBUG Processing 224/653 atomic regions from SNP 66944 to 67544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,889 DEBUG Processing 358/1030 atomic regions from SNP 107231 to 107831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,965 DEBUG Processing 457/909 atomic regions from SNP 137034 to 137634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,981 DEBUG Processing 461/864 atomic regions from SNP 138168 to 138768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,996 DEBUG Processing 424/480 atomic regions from SNP 126905 to 127505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:35,058 DEBUG Processing 339/1139 atomic regions from SNP 101552 to 102152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,070 DEBUG Processing 225/653 atomic regions from SNP 67244 to 67844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,132 DEBUG Processing 359/1030 atomic regions from SNP 107531 to 108131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,191 DEBUG Processing 458/909 atomic regions from SNP 137334 to 137934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,198 DEBUG Processing 462/864 atomic regions from SNP 138468 to 139068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,207 DEBUG Processing 425/480 atomic regions from SNP 127205 to 127805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:35,287 DEBUG Processing 226/653 atomic regions from SNP 67544 to 68144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,307 DEBUG Processing 340/1139 atomic regions from SNP 101852 to 102452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,386 DEBUG Processing 360/1030 atomic regions from SNP 107831 to 108431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,415 DEBUG Processing 463/864 atomic regions from SNP 138768 to 139368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,416 DEBUG Processing 459/909 atomic regions from SNP 137634 to 138234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,419 DEBUG Processing 426/480 atomic regions from SNP 127505 to 128105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:35,507 DEBUG Processing 227/653 atomic regions from SNP 67844 to 68444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,555 DEBUG Processing 341/1139 atomic regions from SNP 102152 to 102752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,630 DEBUG Processing 361/1030 atomic regions from SNP 108131 to 108731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,633 DEBUG Processing 464/864 atomic regions from SNP 139068 to 139668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,633 DEBUG Processing 427/480 atomic regions from SNP 127805 to 128405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:35,642 DEBUG Processing 460/909 atomic regions from SNP 137934 to 138534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,731 DEBUG Processing 228/653 atomic regions from SNP 68144 to 68744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,808 DEBUG Processing 342/1139 atomic regions from SNP 102452 to 103052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,848 DEBUG Processing 428/480 atomic regions from SNP 128105 to 128705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:35,851 DEBUG Processing 465/864 atomic regions from SNP 139368 to 139968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,866 DEBUG Processing 461/909 atomic regions from SNP 138234 to 138834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,877 DEBUG Processing 362/1030 atomic regions from SNP 108431 to 109031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,971 DEBUG Processing 229/653 atomic regions from SNP 68444 to 69044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,063 DEBUG Processing 343/1139 atomic regions from SNP 102752 to 103352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,063 DEBUG Processing 429/480 atomic regions from SNP 128405 to 129005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:36,077 DEBUG Processing 466/864 atomic regions from SNP 139668 to 140268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,097 DEBUG Processing 462/909 atomic regions from SNP 138534 to 139134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,122 DEBUG Processing 363/1030 atomic regions from SNP 108731 to 109331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,186 DEBUG Processing 230/653 atomic regions from SNP 68744 to 69344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,276 DEBUG Processing 430/480 atomic regions from SNP 128705 to 129305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:36,294 DEBUG Processing 467/864 atomic regions from SNP 139968 to 140568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,317 DEBUG Processing 344/1139 atomic regions from SNP 103052 to 103652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,350 DEBUG Processing 463/909 atomic regions from SNP 138834 to 139434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,376 DEBUG Processing 364/1030 atomic regions from SNP 109031 to 109631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,401 DEBUG Processing 231/653 atomic regions from SNP 69044 to 69644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,487 DEBUG Processing 431/480 atomic regions from SNP 129005 to 129605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:36,511 DEBUG Processing 468/864 atomic regions from SNP 140268 to 140868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,571 DEBUG Processing 345/1139 atomic regions from SNP 103352 to 103952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,598 DEBUG Processing 464/909 atomic regions from SNP 139134 to 139734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,618 DEBUG Processing 365/1030 atomic regions from SNP 109331 to 109931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,621 DEBUG Processing 232/653 atomic regions from SNP 69344 to 69944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,694 DEBUG Processing 432/480 atomic regions from SNP 129305 to 129905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:36,724 DEBUG Processing 469/864 atomic regions from SNP 140568 to 141168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,819 DEBUG Processing 346/1139 atomic regions from SNP 103652 to 104252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,840 DEBUG Processing 233/653 atomic regions from SNP 69644 to 70244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,849 DEBUG Processing 465/909 atomic regions from SNP 139434 to 140034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,860 DEBUG Processing 366/1030 atomic regions from SNP 109631 to 110231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,903 DEBUG Processing 433/480 atomic regions from SNP 129605 to 130205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:36,936 DEBUG Processing 470/864 atomic regions from SNP 140868 to 141468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,058 DEBUG Processing 234/653 atomic regions from SNP 69944 to 70544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,064 DEBUG Processing 347/1139 atomic regions from SNP 103952 to 104552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,105 DEBUG Processing 367/1030 atomic regions from SNP 109931 to 110531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,105 DEBUG Processing 466/909 atomic regions from SNP 139734 to 140334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,115 DEBUG Processing 434/480 atomic regions from SNP 129905 to 130505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:37,148 DEBUG Processing 471/864 atomic regions from SNP 141168 to 141768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,275 DEBUG Processing 235/653 atomic regions from SNP 70244 to 70844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,316 DEBUG Processing 348/1139 atomic regions from SNP 104252 to 104852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,332 DEBUG Processing 435/480 atomic regions from SNP 130205 to 130805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:37,352 DEBUG Processing 467/909 atomic regions from SNP 140034 to 140634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,364 DEBUG Processing 472/864 atomic regions from SNP 141468 to 142068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,366 DEBUG Processing 368/1030 atomic regions from SNP 110231 to 110831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,492 DEBUG Processing 236/653 atomic regions from SNP 70544 to 71144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,557 DEBUG Processing 436/480 atomic regions from SNP 130505 to 131105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:37,574 DEBUG Processing 349/1139 atomic regions from SNP 104552 to 105152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,585 DEBUG Processing 473/864 atomic regions from SNP 141768 to 142368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,590 DEBUG Processing 468/909 atomic regions from SNP 140334 to 140934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,618 DEBUG Processing 369/1030 atomic regions from SNP 110531 to 111131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,710 DEBUG Processing 237/653 atomic regions from SNP 70844 to 71444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,773 DEBUG Processing 437/480 atomic regions from SNP 130805 to 131405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:37,806 DEBUG Processing 474/864 atomic regions from SNP 142068 to 142668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,817 DEBUG Processing 469/909 atomic regions from SNP 140634 to 141234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,859 DEBUG Processing 350/1139 atomic regions from SNP 104852 to 105452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,860 DEBUG Processing 370/1030 atomic regions from SNP 110831 to 111431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,923 DEBUG Processing 238/653 atomic regions from SNP 71144 to 71744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,984 DEBUG Processing 438/480 atomic regions from SNP 131105 to 131705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:38,023 DEBUG Processing 475/864 atomic regions from SNP 142368 to 142968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,041 DEBUG Processing 470/909 atomic regions from SNP 140934 to 141534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,101 DEBUG Processing 371/1030 atomic regions from SNP 111131 to 111731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,135 DEBUG Processing 351/1139 atomic regions from SNP 105152 to 105752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,139 DEBUG Processing 239/653 atomic regions from SNP 71444 to 72044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,192 DEBUG Processing 439/480 atomic regions from SNP 131405 to 132005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:38,237 DEBUG Processing 476/864 atomic regions from SNP 142668 to 143268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,262 DEBUG Processing 471/909 atomic regions from SNP 141234 to 141834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,353 DEBUG Processing 372/1030 atomic regions from SNP 111431 to 112031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,355 DEBUG Processing 240/653 atomic regions from SNP 71744 to 72344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,402 DEBUG Processing 440/480 atomic regions from SNP 131705 to 132305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:38,416 DEBUG Processing 352/1139 atomic regions from SNP 105452 to 106052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,451 DEBUG Processing 477/864 atomic regions from SNP 142968 to 143568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,495 DEBUG Processing 472/909 atomic regions from SNP 141534 to 142134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,576 DEBUG Processing 241/653 atomic regions from SNP 72044 to 72644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,595 DEBUG Processing 373/1030 atomic regions from SNP 111731 to 112331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,615 DEBUG Processing 441/480 atomic regions from SNP 132005 to 132605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:38,664 DEBUG Processing 478/864 atomic regions from SNP 143268 to 143868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,699 DEBUG Processing 353/1139 atomic regions from SNP 105752 to 106352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,746 DEBUG Processing 473/909 atomic regions from SNP 141834 to 142434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,797 DEBUG Processing 242/653 atomic regions from SNP 72344 to 72944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,828 DEBUG Processing 442/480 atomic regions from SNP 132305 to 132905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:38,839 DEBUG Processing 374/1030 atomic regions from SNP 112031 to 112631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,878 DEBUG Processing 479/864 atomic regions from SNP 143568 to 144168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,947 DEBUG Processing 354/1139 atomic regions from SNP 106052 to 106652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,995 DEBUG Processing 474/909 atomic regions from SNP 142134 to 142734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,018 DEBUG Processing 243/653 atomic regions from SNP 72644 to 73244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,040 DEBUG Processing 443/480 atomic regions from SNP 132605 to 133205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:39,081 DEBUG Processing 375/1030 atomic regions from SNP 112331 to 112931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,093 DEBUG Processing 480/864 atomic regions from SNP 143868 to 144468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,195 DEBUG Processing 355/1139 atomic regions from SNP 106352 to 106952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,236 DEBUG Processing 244/653 atomic regions from SNP 72944 to 73544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,247 DEBUG Processing 475/909 atomic regions from SNP 142434 to 143034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,251 DEBUG Processing 444/480 atomic regions from SNP 132905 to 133505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:39,307 DEBUG Processing 481/864 atomic regions from SNP 144168 to 144768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,334 DEBUG Processing 376/1030 atomic regions from SNP 112631 to 113231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,449 DEBUG Processing 356/1139 atomic regions from SNP 106652 to 107252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,454 DEBUG Processing 245/653 atomic regions from SNP 73244 to 73844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,463 DEBUG Processing 445/480 atomic regions from SNP 133205 to 133805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:39,501 DEBUG Processing 476/909 atomic regions from SNP 142734 to 143334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,523 DEBUG Processing 482/864 atomic regions from SNP 144468 to 145068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,577 DEBUG Processing 377/1030 atomic regions from SNP 112931 to 113531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,669 DEBUG Processing 246/653 atomic regions from SNP 73544 to 74144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,672 DEBUG Processing 446/480 atomic regions from SNP 133505 to 134105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:39,698 DEBUG Processing 357/1139 atomic regions from SNP 106952 to 107552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,738 DEBUG Processing 483/864 atomic regions from SNP 144768 to 145368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,743 DEBUG Processing 477/909 atomic regions from SNP 143034 to 143634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,818 DEBUG Processing 378/1030 atomic regions from SNP 113231 to 113831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,879 DEBUG Processing 447/480 atomic regions from SNP 133805 to 134405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:39,885 DEBUG Processing 247/653 atomic regions from SNP 73844 to 74444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,953 DEBUG Processing 484/864 atomic regions from SNP 145068 to 145668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,963 DEBUG Processing 358/1139 atomic regions from SNP 107252 to 107852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,983 DEBUG Processing 478/909 atomic regions from SNP 143334 to 143934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,057 DEBUG Processing 379/1030 atomic regions from SNP 113531 to 114131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,088 DEBUG Processing 448/480 atomic regions from SNP 134105 to 134705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:40,123 DEBUG Processing 248/653 atomic regions from SNP 74144 to 74744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,168 DEBUG Processing 485/864 atomic regions from SNP 145368 to 145968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,227 DEBUG Processing 479/909 atomic regions from SNP 143634 to 144234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,232 DEBUG Processing 359/1139 atomic regions from SNP 107552 to 108152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,297 DEBUG Processing 449/480 atomic regions from SNP 134405 to 135005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:40,310 DEBUG Processing 380/1030 atomic regions from SNP 113831 to 114431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,368 DEBUG Processing 249/653 atomic regions from SNP 74444 to 75044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,381 DEBUG Processing 486/864 atomic regions from SNP 145668 to 146268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,475 DEBUG Processing 480/909 atomic regions from SNP 143934 to 144534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,483 DEBUG Processing 360/1139 atomic regions from SNP 107852 to 108452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,508 DEBUG Processing 450/480 atomic regions from SNP 134705 to 135305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:40,550 DEBUG Processing 381/1030 atomic regions from SNP 114131 to 114731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,594 DEBUG Processing 487/864 atomic regions from SNP 145968 to 146568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,603 DEBUG Processing 250/653 atomic regions from SNP 74744 to 75344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,709 DEBUG Processing 481/909 atomic regions from SNP 144234 to 144834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,718 DEBUG Processing 451/480 atomic regions from SNP 135005 to 135605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:40,760 DEBUG Processing 361/1139 atomic regions from SNP 108152 to 108752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,796 DEBUG Processing 382/1030 atomic regions from SNP 114431 to 115031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,810 DEBUG Processing 488/864 atomic regions from SNP 146268 to 146868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,826 DEBUG Processing 251/653 atomic regions from SNP 75044 to 75644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,932 DEBUG Processing 482/909 atomic regions from SNP 144534 to 145134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,933 DEBUG Processing 452/480 atomic regions from SNP 135305 to 135905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:41,025 DEBUG Processing 489/864 atomic regions from SNP 146568 to 147168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,037 DEBUG Processing 362/1139 atomic regions from SNP 108452 to 109052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,039 DEBUG Processing 383/1030 atomic regions from SNP 114731 to 115331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,042 DEBUG Processing 252/653 atomic regions from SNP 75344 to 75944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,139 DEBUG Processing 453/480 atomic regions from SNP 135605 to 136205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:41,152 DEBUG Processing 483/909 atomic regions from SNP 144834 to 145434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,238 DEBUG Processing 490/864 atomic regions from SNP 146868 to 147468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,257 DEBUG Processing 253/653 atomic regions from SNP 75644 to 76244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,290 DEBUG Processing 384/1030 atomic regions from SNP 115031 to 115631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,302 DEBUG Processing 363/1139 atomic regions from SNP 108752 to 109352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,348 DEBUG Processing 454/480 atomic regions from SNP 135905 to 136505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:41,388 DEBUG Processing 484/909 atomic regions from SNP 145134 to 145734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,453 DEBUG Processing 491/864 atomic regions from SNP 147168 to 147768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,471 DEBUG Processing 254/653 atomic regions from SNP 75944 to 76544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,530 DEBUG Processing 385/1030 atomic regions from SNP 115331 to 115931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,558 DEBUG Processing 455/480 atomic regions from SNP 136205 to 136805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:41,563 DEBUG Processing 364/1139 atomic regions from SNP 109052 to 109652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,628 DEBUG Processing 485/909 atomic regions from SNP 145434 to 146034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,684 DEBUG Processing 492/864 atomic regions from SNP 147468 to 148068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,685 DEBUG Processing 255/653 atomic regions from SNP 76244 to 76844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,764 DEBUG Processing 456/480 atomic regions from SNP 136505 to 137105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:41,769 DEBUG Processing 386/1030 atomic regions from SNP 115631 to 116231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,836 DEBUG Processing 365/1139 atomic regions from SNP 109352 to 109952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,882 DEBUG Processing 486/909 atomic regions from SNP 145734 to 146334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,918 DEBUG Processing 256/653 atomic regions from SNP 76544 to 77144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,926 DEBUG Processing 493/864 atomic regions from SNP 147768 to 148368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,973 DEBUG Processing 457/480 atomic regions from SNP 136805 to 137405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:42,009 DEBUG Processing 387/1030 atomic regions from SNP 115931 to 116531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,089 DEBUG Processing 366/1139 atomic regions from SNP 109652 to 110252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,137 DEBUG Processing 487/909 atomic regions from SNP 146034 to 146634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,145 DEBUG Processing 257/653 atomic regions from SNP 76844 to 77444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,147 DEBUG Processing 494/864 atomic regions from SNP 148068 to 148668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,182 DEBUG Processing 458/480 atomic regions from SNP 137105 to 137705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:42,246 DEBUG Processing 388/1030 atomic regions from SNP 116231 to 116831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,335 DEBUG Processing 367/1139 atomic regions from SNP 109952 to 110552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,365 DEBUG Processing 258/653 atomic regions from SNP 77144 to 77744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,365 DEBUG Processing 495/864 atomic regions from SNP 148368 to 148968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,391 DEBUG Processing 459/480 atomic regions from SNP 137405 to 138005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:42,400 DEBUG Processing 488/909 atomic regions from SNP 146334 to 146934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,491 DEBUG Processing 389/1030 atomic regions from SNP 116531 to 117131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,582 DEBUG Processing 259/653 atomic regions from SNP 77444 to 78044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,583 DEBUG Processing 496/864 atomic regions from SNP 148668 to 149268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,587 DEBUG Processing 368/1139 atomic regions from SNP 110252 to 110852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,604 DEBUG Processing 460/480 atomic regions from SNP 137705 to 138305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:42,661 DEBUG Processing 489/909 atomic regions from SNP 146634 to 147234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,731 DEBUG Processing 390/1030 atomic regions from SNP 116831 to 117431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,799 DEBUG Processing 497/864 atomic regions from SNP 148968 to 149568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,800 DEBUG Processing 260/653 atomic regions from SNP 77744 to 78344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,814 DEBUG Processing 461/480 atomic regions from SNP 138005 to 138605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:42,836 DEBUG Processing 369/1139 atomic regions from SNP 110552 to 111152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,918 DEBUG Processing 490/909 atomic regions from SNP 146934 to 147534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,971 DEBUG Processing 391/1030 atomic regions from SNP 117131 to 117731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,015 DEBUG Processing 261/653 atomic regions from SNP 78044 to 78644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,015 DEBUG Processing 498/864 atomic regions from SNP 149268 to 149868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,024 DEBUG Processing 462/480 atomic regions from SNP 138305 to 138905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:43,086 DEBUG Processing 370/1139 atomic regions from SNP 110852 to 111452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,172 DEBUG Processing 491/909 atomic regions from SNP 147234 to 147834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,212 DEBUG Processing 392/1030 atomic regions from SNP 117431 to 118031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,230 DEBUG Processing 499/864 atomic regions from SNP 149568 to 150168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,232 DEBUG Processing 463/480 atomic regions from SNP 138605 to 139205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:43,232 DEBUG Processing 262/653 atomic regions from SNP 78344 to 78944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,334 DEBUG Processing 371/1139 atomic regions from SNP 111152 to 111752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,433 DEBUG Processing 492/909 atomic regions from SNP 147534 to 148134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,444 DEBUG Processing 464/480 atomic regions from SNP 138905 to 139505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:43,446 DEBUG Processing 500/864 atomic regions from SNP 149868 to 150468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,452 DEBUG Processing 263/653 atomic regions from SNP 78644 to 79244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,457 DEBUG Processing 393/1030 atomic regions from SNP 117731 to 118331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,581 DEBUG Processing 372/1139 atomic regions from SNP 111452 to 112052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,655 DEBUG Processing 465/480 atomic regions from SNP 139205 to 139805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:43,662 DEBUG Processing 501/864 atomic regions from SNP 150168 to 150768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,672 DEBUG Processing 264/653 atomic regions from SNP 78944 to 79544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,688 DEBUG Processing 493/909 atomic regions from SNP 147834 to 148434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,704 DEBUG Processing 394/1030 atomic regions from SNP 118031 to 118631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,827 DEBUG Processing 373/1139 atomic regions from SNP 111752 to 112352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,866 DEBUG Processing 466/480 atomic regions from SNP 139505 to 140105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:43,878 DEBUG Processing 502/864 atomic regions from SNP 150468 to 151068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,890 DEBUG Processing 265/653 atomic regions from SNP 79244 to 79844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,944 DEBUG Processing 494/909 atomic regions from SNP 148134 to 148734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,947 DEBUG Processing 395/1030 atomic regions from SNP 118331 to 118931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,075 DEBUG Processing 467/480 atomic regions from SNP 139805 to 140405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:44,089 DEBUG Processing 374/1139 atomic regions from SNP 112052 to 112652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,093 DEBUG Processing 503/864 atomic regions from SNP 150768 to 151368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,110 DEBUG Processing 266/653 atomic regions from SNP 79544 to 80144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,188 DEBUG Processing 396/1030 atomic regions from SNP 118631 to 119231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,202 DEBUG Processing 495/909 atomic regions from SNP 148434 to 149034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,283 DEBUG Processing 468/480 atomic regions from SNP 140105 to 140705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:44,305 DEBUG Processing 504/864 atomic regions from SNP 151068 to 151668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,329 DEBUG Processing 267/653 atomic regions from SNP 79844 to 80444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,360 DEBUG Processing 375/1139 atomic regions from SNP 112352 to 112952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,432 DEBUG Processing 397/1030 atomic regions from SNP 118931 to 119531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,457 DEBUG Processing 496/909 atomic regions from SNP 148734 to 149334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,492 DEBUG Processing 469/480 atomic regions from SNP 140405 to 141005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:44,517 DEBUG Processing 505/864 atomic regions from SNP 151368 to 151968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,547 DEBUG Processing 268/653 atomic regions from SNP 80144 to 80744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,617 DEBUG Processing 376/1139 atomic regions from SNP 112652 to 113252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,675 DEBUG Processing 398/1030 atomic regions from SNP 119231 to 119831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,702 DEBUG Processing 470/480 atomic regions from SNP 140705 to 141305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:44,714 DEBUG Processing 497/909 atomic regions from SNP 149034 to 149634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,728 DEBUG Processing 506/864 atomic regions from SNP 151668 to 152268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,762 DEBUG Processing 269/653 atomic regions from SNP 80444 to 81044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,864 DEBUG Processing 377/1139 atomic regions from SNP 112952 to 113552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,914 DEBUG Processing 471/480 atomic regions from SNP 141005 to 141605 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:44,935 DEBUG Processing 399/1030 atomic regions from SNP 119531 to 120131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,943 DEBUG Processing 507/864 atomic regions from SNP 151968 to 152568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,974 DEBUG Processing 498/909 atomic regions from SNP 149334 to 149934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,977 DEBUG Processing 270/653 atomic regions from SNP 80744 to 81344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,114 DEBUG Processing 378/1139 atomic regions from SNP 113252 to 113852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,128 DEBUG Processing 472/480 atomic regions from SNP 141305 to 141905 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:45,163 DEBUG Processing 508/864 atomic regions from SNP 152268 to 152868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,194 DEBUG Processing 271/653 atomic regions from SNP 81044 to 81644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,207 DEBUG Processing 400/1030 atomic regions from SNP 119831 to 120431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,235 DEBUG Processing 499/909 atomic regions from SNP 149634 to 150234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,339 DEBUG Processing 473/480 atomic regions from SNP 141605 to 142205 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:45,366 DEBUG Processing 379/1139 atomic regions from SNP 113552 to 114152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,382 DEBUG Processing 509/864 atomic regions from SNP 152568 to 153168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,415 DEBUG Processing 272/653 atomic regions from SNP 81344 to 81944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,454 DEBUG Processing 401/1030 atomic regions from SNP 120131 to 120731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,491 DEBUG Processing 500/909 atomic regions from SNP 149934 to 150534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,549 DEBUG Processing 474/480 atomic regions from SNP 141905 to 142505 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:45,598 DEBUG Processing 510/864 atomic regions from SNP 152868 to 153468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,616 DEBUG Processing 380/1139 atomic regions from SNP 113852 to 114452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,633 DEBUG Processing 273/653 atomic regions from SNP 81644 to 82244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,697 DEBUG Processing 402/1030 atomic regions from SNP 120431 to 121031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,744 DEBUG Processing 501/909 atomic regions from SNP 150234 to 150834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,759 DEBUG Processing 475/480 atomic regions from SNP 142205 to 142805 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:45,813 DEBUG Processing 511/864 atomic regions from SNP 153168 to 153768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,853 DEBUG Processing 274/653 atomic regions from SNP 81944 to 82544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,864 DEBUG Processing 381/1139 atomic regions from SNP 114152 to 114752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,937 DEBUG Processing 403/1030 atomic regions from SNP 120731 to 121331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,968 DEBUG Processing 476/480 atomic regions from SNP 142505 to 143105 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:46,001 DEBUG Processing 502/909 atomic regions from SNP 150534 to 151134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,028 DEBUG Processing 512/864 atomic regions from SNP 153468 to 154068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,072 DEBUG Processing 275/653 atomic regions from SNP 82244 to 82844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,114 DEBUG Processing 382/1139 atomic regions from SNP 114452 to 115052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,179 DEBUG Processing 477/480 atomic regions from SNP 142805 to 143405 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:46,181 DEBUG Processing 404/1030 atomic regions from SNP 121031 to 121631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,262 DEBUG Processing 513/864 atomic regions from SNP 153768 to 154368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,268 DEBUG Processing 503/909 atomic regions from SNP 150834 to 151434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,294 DEBUG Processing 276/653 atomic regions from SNP 82544 to 83144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,362 DEBUG Processing 383/1139 atomic regions from SNP 114752 to 115352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,387 DEBUG Processing 478/480 atomic regions from SNP 143105 to 143705 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:46,434 DEBUG Processing 405/1030 atomic regions from SNP 121331 to 121931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,504 DEBUG Processing 514/864 atomic regions from SNP 154068 to 154668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,513 DEBUG Processing 277/653 atomic regions from SNP 82844 to 83444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,519 DEBUG Processing 504/909 atomic regions from SNP 151134 to 151734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,597 DEBUG Processing 479/480 atomic regions from SNP 143405 to 144005 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:46,610 DEBUG Processing 384/1139 atomic regions from SNP 115052 to 115652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,687 DEBUG Processing 406/1030 atomic regions from SNP 121631 to 122231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,731 DEBUG Processing 278/653 atomic regions from SNP 83144 to 83744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,735 DEBUG Processing 515/864 atomic regions from SNP 154368 to 154968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,747 DEBUG Processing 505/909 atomic regions from SNP 151434 to 152034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,805 DEBUG Processing 480/480 atomic regions from SNP 143705 to 144305 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:46,858 DEBUG Processing 385/1139 atomic regions from SNP 115352 to 115952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,908 DEBUG Unique SNPs positions in subchromosome 3: 144306 2025-01-31 09:45:46,947 DEBUG Processing 279/653 atomic regions from SNP 83444 to 84044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,948 DEBUG Processing 407/1030 atomic regions from SNP 121931 to 122531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,966 DEBUG Processing 516/864 atomic regions from SNP 154668 to 155268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,974 DEBUG Processing 506/909 atomic regions from SNP 151734 to 152334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,106 DEBUG Processing 386/1139 atomic regions from SNP 115652 to 116252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,163 DEBUG Processing 280/653 atomic regions from SNP 83744 to 84344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,180 DEBUG Processing 517/864 atomic regions from SNP 154968 to 155568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,199 DEBUG Processing 507/909 atomic regions from SNP 152034 to 152634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,201 DEBUG Processing 408/1030 atomic regions from SNP 122231 to 122831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,354 DEBUG Processing 387/1139 atomic regions from SNP 115952 to 116552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,383 DEBUG Processing 281/653 atomic regions from SNP 84044 to 84644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,395 DEBUG Processing 518/864 atomic regions from SNP 155268 to 155868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,425 DEBUG Processing 508/909 atomic regions from SNP 152334 to 152934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,468 DEBUG Processing 409/1030 atomic regions from SNP 122531 to 123131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,602 DEBUG Subchromosome time: 119.91929029114544, subchromosome SNPs: 144306 2025-01-31 09:45:47,603 DEBUG Processing 388/1139 atomic regions from SNP 116252 to 116852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,604 DEBUG Processing 282/653 atomic regions from SNP 84344 to 84944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,611 DEBUG Processing 519/864 atomic regions from SNP 155568 to 156168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,619 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:47,654 DEBUG Processing 509/909 atomic regions from SNP 152634 to 153234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,734 DEBUG Processing 410/1030 atomic regions from SNP 122831 to 123431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,828 DEBUG Processing 283/653 atomic regions from SNP 84644 to 85244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,846 DEBUG Processing 520/864 atomic regions from SNP 155868 to 156468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,852 DEBUG Processing 389/1139 atomic regions from SNP 116552 to 117152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,881 DEBUG Processing 510/909 atomic regions from SNP 152934 to 153534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,980 DEBUG Processing 411/1030 atomic regions from SNP 123131 to 123731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,052 DEBUG Processing 284/653 atomic regions from SNP 84944 to 85544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,077 DEBUG Processing 521/864 atomic regions from SNP 156168 to 156768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,106 DEBUG Processing 390/1139 atomic regions from SNP 116852 to 117452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,110 DEBUG Processing 511/909 atomic regions from SNP 153234 to 153834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,226 DEBUG Processing 412/1030 atomic regions from SNP 123431 to 124031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,272 DEBUG Processing 285/653 atomic regions from SNP 85244 to 85844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,293 DEBUG Processing 522/864 atomic regions from SNP 156468 to 157068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,337 DEBUG Processing 512/909 atomic regions from SNP 153534 to 154134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,355 DEBUG Processing 391/1139 atomic regions from SNP 117152 to 117752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,479 DEBUG Processing 413/1030 atomic regions from SNP 123731 to 124331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,491 DEBUG Processing 286/653 atomic regions from SNP 85544 to 86144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,509 DEBUG Processing 523/864 atomic regions from SNP 156768 to 157368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,566 DEBUG Processing 513/909 atomic regions from SNP 153834 to 154434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,603 DEBUG Processing 392/1139 atomic regions from SNP 117452 to 118052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,711 DEBUG Processing 287/653 atomic regions from SNP 85844 to 86444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,724 DEBUG Processing 414/1030 atomic regions from SNP 124031 to 124631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,725 DEBUG Processing 524/864 atomic regions from SNP 157068 to 157668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,791 DEBUG Processing 514/909 atomic regions from SNP 154134 to 154734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,848 DEBUG Processing 393/1139 atomic regions from SNP 117752 to 118352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,927 DEBUG Processing 288/653 atomic regions from SNP 86144 to 86744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,941 DEBUG Processing 525/864 atomic regions from SNP 157368 to 157968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,971 DEBUG Processing 415/1030 atomic regions from SNP 124331 to 124931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,017 DEBUG Processing 515/909 atomic regions from SNP 154434 to 155034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,095 DEBUG Processing 394/1139 atomic regions from SNP 118052 to 118652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,144 DEBUG Processing 289/653 atomic regions from SNP 86444 to 87044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,158 DEBUG Processing 526/864 atomic regions from SNP 157668 to 158268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,222 DEBUG Processing 416/1030 atomic regions from SNP 124631 to 125231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,236 DEBUG Processing 516/909 atomic regions from SNP 154734 to 155334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,341 DEBUG Processing 395/1139 atomic regions from SNP 118352 to 118952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,360 DEBUG Processing 290/653 atomic regions from SNP 86744 to 87344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,372 DEBUG Processing 527/864 atomic regions from SNP 157968 to 158568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,461 DEBUG Processing 517/909 atomic regions from SNP 155034 to 155634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,472 DEBUG Processing 417/1030 atomic regions from SNP 124931 to 125531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,579 DEBUG Processing 291/653 atomic regions from SNP 87044 to 87644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,590 DEBUG Processing 396/1139 atomic regions from SNP 118652 to 119252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,591 DEBUG Processing 528/864 atomic regions from SNP 158268 to 158868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,684 DEBUG Processing 518/909 atomic regions from SNP 155334 to 155934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,710 DEBUG Processing 418/1030 atomic regions from SNP 125231 to 125831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,797 DEBUG Processing 292/653 atomic regions from SNP 87344 to 87944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,818 DEBUG Processing 529/864 atomic regions from SNP 158568 to 159168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,837 DEBUG Processing 397/1139 atomic regions from SNP 118952 to 119552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,909 DEBUG Processing 519/909 atomic regions from SNP 155634 to 156234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,966 DEBUG Processing 419/1030 atomic regions from SNP 125531 to 126131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,015 DEBUG Processing 293/653 atomic regions from SNP 87644 to 88244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,050 DEBUG Processing 530/864 atomic regions from SNP 158868 to 159468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,085 DEBUG Processing 398/1139 atomic regions from SNP 119252 to 119852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,131 DEBUG Processing 520/909 atomic regions from SNP 155934 to 156534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,228 DEBUG Processing 420/1030 atomic regions from SNP 125831 to 126431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,232 DEBUG Processing 294/653 atomic regions from SNP 87944 to 88544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,263 DEBUG Processing 531/864 atomic regions from SNP 159168 to 159768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,331 DEBUG Processing 399/1139 atomic regions from SNP 119552 to 120152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,356 DEBUG Processing 521/909 atomic regions from SNP 156234 to 156834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,453 DEBUG Processing 295/653 atomic regions from SNP 88244 to 88844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,476 DEBUG Processing 532/864 atomic regions from SNP 159468 to 160068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,485 DEBUG Processing 421/1030 atomic regions from SNP 126131 to 126731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,578 DEBUG Processing 400/1139 atomic regions from SNP 119852 to 120452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,589 DEBUG Processing 522/909 atomic regions from SNP 156534 to 157134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,674 DEBUG Processing 296/653 atomic regions from SNP 88544 to 89144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,689 DEBUG Processing 533/864 atomic regions from SNP 159768 to 160368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,741 DEBUG Processing 422/1030 atomic regions from SNP 126431 to 127031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,825 DEBUG Processing 401/1139 atomic regions from SNP 120152 to 120752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,839 DEBUG Processing 523/909 atomic regions from SNP 156834 to 157434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,890 DEBUG Processing 297/653 atomic regions from SNP 88844 to 89444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,902 DEBUG Processing 534/864 atomic regions from SNP 160068 to 160668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,006 DEBUG Processing 423/1030 atomic regions from SNP 126731 to 127331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,074 DEBUG Processing 402/1139 atomic regions from SNP 120452 to 121052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,092 DEBUG Processing 524/909 atomic regions from SNP 157134 to 157734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,107 DEBUG Processing 298/653 atomic regions from SNP 89144 to 89744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,115 DEBUG Processing 535/864 atomic regions from SNP 160368 to 160968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,250 DEBUG Processing 424/1030 atomic regions from SNP 127031 to 127631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,321 DEBUG Processing 299/653 atomic regions from SNP 89444 to 90044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,329 DEBUG Processing 403/1139 atomic regions from SNP 120752 to 121352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,331 DEBUG Processing 536/864 atomic regions from SNP 160668 to 161268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,350 DEBUG Processing 525/909 atomic regions from SNP 157434 to 158034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,524 DEBUG Processing 425/1030 atomic regions from SNP 127331 to 127931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,537 DEBUG Processing 300/653 atomic regions from SNP 89744 to 90344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,545 DEBUG Processing 537/864 atomic regions from SNP 160968 to 161568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,579 DEBUG Processing 404/1139 atomic regions from SNP 121052 to 121652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,605 DEBUG Processing 526/909 atomic regions from SNP 157734 to 158334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,755 DEBUG Processing 301/653 atomic regions from SNP 90044 to 90644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,759 DEBUG Processing 538/864 atomic regions from SNP 161268 to 161868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,781 DEBUG Processing 426/1030 atomic regions from SNP 127631 to 128231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,827 DEBUG Processing 405/1139 atomic regions from SNP 121352 to 121952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,864 DEBUG Processing 527/909 atomic regions from SNP 158034 to 158634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,973 DEBUG Processing 539/864 atomic regions from SNP 161568 to 162168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,973 DEBUG Processing 302/653 atomic regions from SNP 90344 to 90944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,021 DEBUG Processing 427/1030 atomic regions from SNP 127931 to 128531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,077 DEBUG Processing 406/1139 atomic regions from SNP 121652 to 122252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,117 DEBUG Processing 528/909 atomic regions from SNP 158334 to 158934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,182 DEBUG Processing 540/864 atomic regions from SNP 161868 to 162468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,189 DEBUG Processing 303/653 atomic regions from SNP 90644 to 91244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,263 DEBUG Processing 428/1030 atomic regions from SNP 128231 to 128831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,356 DEBUG Processing 407/1139 atomic regions from SNP 121952 to 122552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,366 DEBUG Processing 529/909 atomic regions from SNP 158634 to 159234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,396 DEBUG Processing 541/864 atomic regions from SNP 162168 to 162768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,405 DEBUG Processing 304/653 atomic regions from SNP 90944 to 91544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,505 DEBUG Processing 429/1030 atomic regions from SNP 128531 to 129131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,612 DEBUG Processing 542/864 atomic regions from SNP 162468 to 163068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,619 DEBUG Processing 530/909 atomic regions from SNP 158934 to 159534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,624 DEBUG Processing 305/653 atomic regions from SNP 91244 to 91844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,634 DEBUG Processing 408/1139 atomic regions from SNP 122252 to 122852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,742 DEBUG Processing 430/1030 atomic regions from SNP 128831 to 129431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,825 DEBUG Processing 543/864 atomic regions from SNP 162768 to 163368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,845 DEBUG Processing 306/653 atomic regions from SNP 91544 to 92144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,877 DEBUG Processing 531/909 atomic regions from SNP 159234 to 159834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,890 DEBUG Processing 409/1139 atomic regions from SNP 122552 to 123152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,981 DEBUG Processing 431/1030 atomic regions from SNP 129131 to 129731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,035 DEBUG Processing 544/864 atomic regions from SNP 163068 to 163668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,063 DEBUG Processing 307/653 atomic regions from SNP 91844 to 92444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,134 DEBUG Processing 532/909 atomic regions from SNP 159534 to 160134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,151 DEBUG Processing 410/1139 atomic regions from SNP 122852 to 123452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,219 DEBUG Processing 432/1030 atomic regions from SNP 129431 to 130031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,247 DEBUG Processing 545/864 atomic regions from SNP 163368 to 163968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,279 DEBUG Processing 308/653 atomic regions from SNP 92144 to 92744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,391 DEBUG Processing 533/909 atomic regions from SNP 159834 to 160434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,406 DEBUG Processing 411/1139 atomic regions from SNP 123152 to 123752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,460 DEBUG Processing 546/864 atomic regions from SNP 163668 to 164268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,465 DEBUG Processing 433/1030 atomic regions from SNP 129731 to 130331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,496 DEBUG Processing 309/653 atomic regions from SNP 92444 to 93044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,647 DEBUG Processing 534/909 atomic regions from SNP 160134 to 160734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,654 DEBUG Processing 412/1139 atomic regions from SNP 123452 to 124052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,677 DEBUG Processing 547/864 atomic regions from SNP 163968 to 164568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,707 DEBUG Processing 434/1030 atomic regions from SNP 130031 to 130631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,714 DEBUG Processing 310/653 atomic regions from SNP 92744 to 93344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,904 DEBUG Processing 413/1139 atomic regions from SNP 123752 to 124352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,906 DEBUG Processing 535/909 atomic regions from SNP 160434 to 161034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,913 DEBUG Processing 548/864 atomic regions from SNP 164268 to 164868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,932 DEBUG Processing 311/653 atomic regions from SNP 93044 to 93644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,949 DEBUG Processing 435/1030 atomic regions from SNP 130331 to 130931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,142 DEBUG Processing 549/864 atomic regions from SNP 164568 to 165168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,152 DEBUG Processing 312/653 atomic regions from SNP 93344 to 93944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,157 DEBUG Processing 414/1139 atomic regions from SNP 124052 to 124652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,165 DEBUG Processing 536/909 atomic regions from SNP 160734 to 161334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,210 DEBUG Processing 436/1030 atomic regions from SNP 130631 to 131231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,367 DEBUG Processing 550/864 atomic regions from SNP 164868 to 165468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,370 DEBUG Processing 313/653 atomic regions from SNP 93644 to 94244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,409 DEBUG Processing 415/1139 atomic regions from SNP 124352 to 124952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,422 DEBUG Processing 537/909 atomic regions from SNP 161034 to 161634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,477 DEBUG Processing 437/1030 atomic regions from SNP 130931 to 131531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,589 DEBUG Processing 314/653 atomic regions from SNP 93944 to 94544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,612 DEBUG Processing 551/864 atomic regions from SNP 165168 to 165768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,659 DEBUG Processing 416/1139 atomic regions from SNP 124652 to 125252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,667 DEBUG Processing 538/909 atomic regions from SNP 161334 to 161934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,716 DEBUG Processing 438/1030 atomic regions from SNP 131231 to 131831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,808 DEBUG Processing 315/653 atomic regions from SNP 94244 to 94844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,851 DEBUG Processing 552/864 atomic regions from SNP 165468 to 166068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,907 DEBUG Processing 417/1139 atomic regions from SNP 124952 to 125552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,919 DEBUG Processing 539/909 atomic regions from SNP 161634 to 162234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,966 DEBUG Processing 439/1030 atomic regions from SNP 131531 to 132131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,027 DEBUG Processing 316/653 atomic regions from SNP 94544 to 95144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,077 DEBUG Processing 553/864 atomic regions from SNP 165768 to 166368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,157 DEBUG Processing 540/909 atomic regions from SNP 161934 to 162534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,172 DEBUG Processing 418/1139 atomic regions from SNP 125252 to 125852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,211 DEBUG Processing 440/1030 atomic regions from SNP 131831 to 132431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,246 DEBUG Processing 317/653 atomic regions from SNP 94844 to 95444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,289 DEBUG Processing 554/864 atomic regions from SNP 166068 to 166668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,390 DEBUG Processing 541/909 atomic regions from SNP 162234 to 162834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,447 DEBUG Processing 419/1139 atomic regions from SNP 125552 to 126152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,464 DEBUG Processing 318/653 atomic regions from SNP 95144 to 95744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,466 DEBUG Processing 441/1030 atomic regions from SNP 132131 to 132731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,504 DEBUG Processing 555/864 atomic regions from SNP 166368 to 166968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,647 DEBUG Processing 542/909 atomic regions from SNP 162534 to 163134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,684 DEBUG Processing 319/653 atomic regions from SNP 95444 to 96044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,713 DEBUG Processing 556/864 atomic regions from SNP 166668 to 167268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,721 DEBUG Processing 442/1030 atomic regions from SNP 132431 to 133031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,731 DEBUG Processing 420/1139 atomic regions from SNP 125852 to 126452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,899 DEBUG Processing 543/909 atomic regions from SNP 162834 to 163434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,907 DEBUG Processing 320/653 atomic regions from SNP 95744 to 96344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,928 DEBUG Processing 557/864 atomic regions from SNP 166968 to 167568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,983 DEBUG Processing 443/1030 atomic regions from SNP 132731 to 133331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,010 DEBUG Processing 421/1139 atomic regions from SNP 126152 to 126752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,063 DEBUG Segmenting atomic regions: 2025-01-31 09:45:56,125 DEBUG Processing 321/653 atomic regions from SNP 96044 to 96644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,144 DEBUG Processing 558/864 atomic regions from SNP 167268 to 167868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,155 DEBUG Processing 544/909 atomic regions from SNP 163134 to 163734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,171 DEBUG Processing 1/238 atomic regions from SNP 0 to 601 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,224 DEBUG Processing 444/1030 atomic regions from SNP 133031 to 133631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,290 DEBUG Processing 422/1139 atomic regions from SNP 126452 to 127052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,344 DEBUG Processing 322/653 atomic regions from SNP 96344 to 96944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,361 DEBUG Processing 559/864 atomic regions from SNP 167568 to 168168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,378 DEBUG Processing 2/238 atomic regions from SNP 301 to 902 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,406 DEBUG Processing 545/909 atomic regions from SNP 163434 to 164034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,471 DEBUG Processing 445/1030 atomic regions from SNP 133331 to 133931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,563 DEBUG Processing 323/653 atomic regions from SNP 96644 to 97244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,571 DEBUG Processing 423/1139 atomic regions from SNP 126752 to 127352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,580 DEBUG Processing 560/864 atomic regions from SNP 167868 to 168468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,586 DEBUG Processing 3/238 atomic regions from SNP 602 to 1203 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,648 DEBUG Processing 546/909 atomic regions from SNP 163734 to 164334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,711 DEBUG Processing 446/1030 atomic regions from SNP 133631 to 134231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,783 DEBUG Processing 324/653 atomic regions from SNP 96944 to 97544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,793 DEBUG Processing 4/238 atomic regions from SNP 903 to 1504 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,800 DEBUG Processing 561/864 atomic regions from SNP 168168 to 168768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,854 DEBUG Processing 424/1139 atomic regions from SNP 127052 to 127652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,878 DEBUG Processing 547/909 atomic regions from SNP 164034 to 164634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,949 DEBUG Processing 447/1030 atomic regions from SNP 133931 to 134531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,000 DEBUG Processing 5/238 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,002 DEBUG Processing 325/653 atomic regions from SNP 97244 to 97844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,017 DEBUG Processing 562/864 atomic regions from SNP 168468 to 169068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,102 DEBUG Processing 548/909 atomic regions from SNP 164334 to 164934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,135 DEBUG Processing 425/1139 atomic regions from SNP 127352 to 127952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,207 DEBUG Processing 6/238 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,208 DEBUG Processing 448/1030 atomic regions from SNP 134231 to 134831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,222 DEBUG Processing 326/653 atomic regions from SNP 97544 to 98144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,233 DEBUG Processing 563/864 atomic regions from SNP 168768 to 169368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,324 DEBUG Processing 549/909 atomic regions from SNP 164634 to 165234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,416 DEBUG Processing 7/238 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,419 DEBUG Processing 426/1139 atomic regions from SNP 127652 to 128252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,442 DEBUG Processing 327/653 atomic regions from SNP 97844 to 98444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,454 DEBUG Processing 564/864 atomic regions from SNP 169068 to 169668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,458 DEBUG Processing 449/1030 atomic regions from SNP 134531 to 135131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,553 DEBUG Processing 550/909 atomic regions from SNP 164934 to 165534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,623 DEBUG Processing 8/238 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,663 DEBUG Processing 328/653 atomic regions from SNP 98144 to 98744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,674 DEBUG Processing 565/864 atomic regions from SNP 169368 to 169968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,705 DEBUG Processing 427/1139 atomic regions from SNP 127952 to 128552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,706 DEBUG Processing 450/1030 atomic regions from SNP 134831 to 135431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,775 DEBUG Processing 551/909 atomic regions from SNP 165234 to 165834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,827 DEBUG Processing 9/238 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,882 DEBUG Processing 329/653 atomic regions from SNP 98444 to 99044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,893 DEBUG Processing 566/864 atomic regions from SNP 169668 to 170268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,951 DEBUG Processing 451/1030 atomic regions from SNP 135131 to 135731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,978 DEBUG Processing 428/1139 atomic regions from SNP 128252 to 128852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,998 DEBUG Processing 552/909 atomic regions from SNP 165534 to 166134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,031 DEBUG Processing 10/238 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,101 DEBUG Processing 330/653 atomic regions from SNP 98744 to 99344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,108 DEBUG Processing 567/864 atomic regions from SNP 169968 to 170568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,193 DEBUG Processing 452/1030 atomic regions from SNP 135431 to 136031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,223 DEBUG Processing 553/909 atomic regions from SNP 165834 to 166434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,227 DEBUG Processing 429/1139 atomic regions from SNP 128552 to 129152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,237 DEBUG Processing 11/238 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,317 DEBUG Processing 331/653 atomic regions from SNP 99044 to 99644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,320 DEBUG Processing 568/864 atomic regions from SNP 170268 to 170868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,442 DEBUG Processing 453/1030 atomic regions from SNP 135731 to 136331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,449 DEBUG Processing 12/238 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,451 DEBUG Processing 554/909 atomic regions from SNP 166134 to 166734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,480 DEBUG Processing 430/1139 atomic regions from SNP 128852 to 129452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,530 DEBUG Processing 569/864 atomic regions from SNP 170568 to 171168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,550 DEBUG Processing 332/653 atomic regions from SNP 99344 to 99944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,660 DEBUG Processing 13/238 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,679 DEBUG Processing 555/909 atomic regions from SNP 166434 to 167034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,688 DEBUG Processing 454/1030 atomic regions from SNP 136031 to 136631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,734 DEBUG Processing 431/1139 atomic regions from SNP 129152 to 129752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,764 DEBUG Processing 570/864 atomic regions from SNP 170868 to 171468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,792 DEBUG Processing 333/653 atomic regions from SNP 99644 to 100244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,869 DEBUG Processing 14/238 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,909 DEBUG Processing 556/909 atomic regions from SNP 166734 to 167334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,932 DEBUG Processing 455/1030 atomic regions from SNP 136331 to 136931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,984 DEBUG Processing 432/1139 atomic regions from SNP 129452 to 130052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,011 DEBUG Processing 571/864 atomic regions from SNP 171168 to 171768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,032 DEBUG Processing 334/653 atomic regions from SNP 99944 to 100544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,077 DEBUG Processing 15/238 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,148 DEBUG Processing 557/909 atomic regions from SNP 167034 to 167634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,173 DEBUG Processing 456/1030 atomic regions from SNP 136631 to 137231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,233 DEBUG Processing 433/1139 atomic regions from SNP 129752 to 130352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,256 DEBUG Processing 572/864 atomic regions from SNP 171468 to 172068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,274 DEBUG Processing 335/653 atomic regions from SNP 100244 to 100844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,282 DEBUG Processing 16/238 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,405 DEBUG Processing 558/909 atomic regions from SNP 167334 to 167934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,418 DEBUG Processing 457/1030 atomic regions from SNP 136931 to 137531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,481 DEBUG Processing 434/1139 atomic regions from SNP 130052 to 130652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,489 DEBUG Processing 17/238 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,490 DEBUG Processing 336/653 atomic regions from SNP 100544 to 101144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,503 DEBUG Processing 573/864 atomic regions from SNP 171768 to 172368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,654 DEBUG Processing 559/909 atomic regions from SNP 167634 to 168234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,660 DEBUG Processing 458/1030 atomic regions from SNP 137231 to 137831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,698 DEBUG Processing 18/238 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,708 DEBUG Processing 337/653 atomic regions from SNP 100844 to 101444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,722 DEBUG Processing 574/864 atomic regions from SNP 172068 to 172668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,733 DEBUG Processing 435/1139 atomic regions from SNP 130352 to 130952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,901 DEBUG Processing 459/1030 atomic regions from SNP 137531 to 138131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,902 DEBUG Processing 560/909 atomic regions from SNP 167934 to 168534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,908 DEBUG Processing 19/238 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,928 DEBUG Processing 338/653 atomic regions from SNP 101144 to 101744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,941 DEBUG Processing 575/864 atomic regions from SNP 172368 to 172968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,988 DEBUG Processing 436/1139 atomic regions from SNP 130652 to 131252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,117 DEBUG Processing 20/238 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,146 DEBUG Processing 339/653 atomic regions from SNP 101444 to 102044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,146 DEBUG Processing 460/1030 atomic regions from SNP 137831 to 138431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,159 DEBUG Processing 561/909 atomic regions from SNP 168234 to 168834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,161 DEBUG Processing 576/864 atomic regions from SNP 172668 to 173268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,239 DEBUG Processing 437/1139 atomic regions from SNP 130952 to 131552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,324 DEBUG Processing 21/238 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,363 DEBUG Processing 340/653 atomic regions from SNP 101744 to 102344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,380 DEBUG Processing 577/864 atomic regions from SNP 172968 to 173568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,404 DEBUG Processing 461/1030 atomic regions from SNP 138131 to 138731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,408 DEBUG Processing 562/909 atomic regions from SNP 168534 to 169134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,485 DEBUG Processing 438/1139 atomic regions from SNP 131252 to 131852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,528 DEBUG Processing 22/238 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,580 DEBUG Processing 341/653 atomic regions from SNP 102044 to 102644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,595 DEBUG Processing 578/864 atomic regions from SNP 173268 to 173868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,646 DEBUG Processing 462/1030 atomic regions from SNP 138431 to 139031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,659 DEBUG Processing 563/909 atomic regions from SNP 168834 to 169434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,731 DEBUG Processing 439/1139 atomic regions from SNP 131552 to 132152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,734 DEBUG Processing 23/238 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,797 DEBUG Processing 342/653 atomic regions from SNP 102344 to 102944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,810 DEBUG Processing 579/864 atomic regions from SNP 173568 to 174168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,886 DEBUG Processing 463/1030 atomic regions from SNP 138731 to 139331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,920 DEBUG Processing 564/909 atomic regions from SNP 169134 to 169734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,940 DEBUG Processing 24/238 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,980 DEBUG Processing 440/1139 atomic regions from SNP 131852 to 132452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,013 DEBUG Processing 343/653 atomic regions from SNP 102644 to 103244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,032 DEBUG Processing 580/864 atomic regions from SNP 173868 to 174468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,128 DEBUG Processing 464/1030 atomic regions from SNP 139031 to 139631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,149 DEBUG Processing 25/238 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,180 DEBUG Processing 565/909 atomic regions from SNP 169434 to 170034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,233 DEBUG Processing 441/1139 atomic regions from SNP 132152 to 132752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,259 DEBUG Processing 344/653 atomic regions from SNP 102944 to 103544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,267 DEBUG Processing 581/864 atomic regions from SNP 174168 to 174768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,353 DEBUG Processing 26/238 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,382 DEBUG Processing 465/1030 atomic regions from SNP 139331 to 139931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,427 DEBUG Processing 566/909 atomic regions from SNP 169734 to 170334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,480 DEBUG Processing 345/653 atomic regions from SNP 103244 to 103844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,481 DEBUG Processing 442/1139 atomic regions from SNP 132452 to 133052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,507 DEBUG Processing 582/864 atomic regions from SNP 174468 to 175068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,557 DEBUG Processing 27/238 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,627 DEBUG Processing 466/1030 atomic regions from SNP 139631 to 140231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,669 DEBUG Processing 567/909 atomic regions from SNP 170034 to 170634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,699 DEBUG Processing 346/653 atomic regions from SNP 103544 to 104144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,730 DEBUG Processing 443/1139 atomic regions from SNP 132752 to 133352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,730 DEBUG Processing 583/864 atomic regions from SNP 174768 to 175368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,761 DEBUG Processing 28/238 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,875 DEBUG Processing 467/1030 atomic regions from SNP 139931 to 140531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,921 DEBUG Processing 347/653 atomic regions from SNP 103844 to 104444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,924 DEBUG Processing 568/909 atomic regions from SNP 170334 to 170934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,945 DEBUG Processing 584/864 atomic regions from SNP 175068 to 175668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,966 DEBUG Processing 29/238 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,979 DEBUG Processing 444/1139 atomic regions from SNP 133052 to 133652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,116 DEBUG Processing 468/1030 atomic regions from SNP 140231 to 140831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,143 DEBUG Processing 348/653 atomic regions from SNP 104144 to 104744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,163 DEBUG Processing 585/864 atomic regions from SNP 175368 to 175968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,174 DEBUG Processing 30/238 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,184 DEBUG Processing 569/909 atomic regions from SNP 170634 to 171234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,241 DEBUG Processing 445/1139 atomic regions from SNP 133352 to 133952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,362 DEBUG Processing 349/653 atomic regions from SNP 104444 to 105044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,368 DEBUG Processing 469/1030 atomic regions from SNP 140531 to 141131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,380 DEBUG Processing 586/864 atomic regions from SNP 175668 to 176268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,384 DEBUG Processing 31/238 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,421 DEBUG Processing 570/909 atomic regions from SNP 170934 to 171534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,502 DEBUG Processing 446/1139 atomic regions from SNP 133652 to 134252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,579 DEBUG Processing 350/653 atomic regions from SNP 104744 to 105344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,592 DEBUG Processing 32/238 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,598 DEBUG Processing 587/864 atomic regions from SNP 175968 to 176568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,614 DEBUG Processing 470/1030 atomic regions from SNP 140831 to 141431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,650 DEBUG Processing 571/909 atomic regions from SNP 171234 to 171834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,749 DEBUG Processing 447/1139 atomic regions from SNP 133952 to 134552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,794 DEBUG Processing 351/653 atomic regions from SNP 105044 to 105644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,800 DEBUG Processing 33/238 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,836 DEBUG Processing 588/864 atomic regions from SNP 176268 to 176868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,861 DEBUG Processing 471/1030 atomic regions from SNP 141131 to 141731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,892 DEBUG Processing 572/909 atomic regions from SNP 171534 to 172134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,996 DEBUG Processing 448/1139 atomic regions from SNP 134252 to 134852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,006 DEBUG Processing 34/238 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,008 DEBUG Processing 352/653 atomic regions from SNP 105344 to 105944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,061 DEBUG Processing 589/864 atomic regions from SNP 176568 to 177168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,104 DEBUG Processing 472/1030 atomic regions from SNP 141431 to 142031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,126 DEBUG Processing 573/909 atomic regions from SNP 171834 to 172434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,211 DEBUG Processing 35/238 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,227 DEBUG Processing 353/653 atomic regions from SNP 105644 to 106244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,246 DEBUG Processing 449/1139 atomic regions from SNP 134552 to 135152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,278 DEBUG Processing 590/864 atomic regions from SNP 176868 to 177468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,357 DEBUG Processing 473/1030 atomic regions from SNP 141731 to 142331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,385 DEBUG Processing 574/909 atomic regions from SNP 172134 to 172734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,415 DEBUG Processing 36/238 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,445 DEBUG Processing 354/653 atomic regions from SNP 105944 to 106544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,495 DEBUG Processing 450/1139 atomic regions from SNP 134852 to 135452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,505 DEBUG Processing 591/864 atomic regions from SNP 177168 to 177768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,600 DEBUG Processing 474/1030 atomic regions from SNP 142031 to 142631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,621 DEBUG Processing 37/238 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,646 DEBUG Processing 575/909 atomic regions from SNP 172434 to 173034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,666 DEBUG Processing 355/653 atomic regions from SNP 106244 to 106844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,730 DEBUG Processing 592/864 atomic regions from SNP 177468 to 178068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,748 DEBUG Processing 451/1139 atomic regions from SNP 135152 to 135752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,827 DEBUG Processing 38/238 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,842 DEBUG Processing 475/1030 atomic regions from SNP 142331 to 142931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,889 DEBUG Processing 356/653 atomic regions from SNP 106544 to 107144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,906 DEBUG Processing 576/909 atomic regions from SNP 172734 to 173334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,956 DEBUG Processing 593/864 atomic regions from SNP 177768 to 178368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,997 DEBUG Processing 452/1139 atomic regions from SNP 135452 to 136052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,029 DEBUG Processing 39/238 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,083 DEBUG Processing 476/1030 atomic regions from SNP 142631 to 143231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,110 DEBUG Processing 357/653 atomic regions from SNP 106844 to 107444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,156 DEBUG Processing 577/909 atomic regions from SNP 173034 to 173634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,177 DEBUG Processing 594/864 atomic regions from SNP 178068 to 178668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,231 DEBUG Processing 40/238 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,253 DEBUG Processing 453/1139 atomic regions from SNP 135752 to 136352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,331 DEBUG Processing 358/653 atomic regions from SNP 107144 to 107744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,336 DEBUG Processing 477/1030 atomic regions from SNP 142931 to 143531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,407 DEBUG Processing 595/864 atomic regions from SNP 178368 to 178968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,407 DEBUG Processing 578/909 atomic regions from SNP 173334 to 173934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,435 DEBUG Processing 41/238 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,500 DEBUG Processing 454/1139 atomic regions from SNP 136052 to 136652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,550 DEBUG Processing 359/653 atomic regions from SNP 107444 to 108044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,580 DEBUG Processing 478/1030 atomic regions from SNP 143231 to 143831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,639 DEBUG Processing 42/238 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,653 DEBUG Processing 596/864 atomic regions from SNP 178668 to 179268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,661 DEBUG Processing 579/909 atomic regions from SNP 173634 to 174234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,749 DEBUG Processing 455/1139 atomic regions from SNP 136352 to 136952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,769 DEBUG Processing 360/653 atomic regions from SNP 107744 to 108344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,825 DEBUG Processing 479/1030 atomic regions from SNP 143531 to 144131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,845 DEBUG Processing 43/238 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,875 DEBUG Processing 597/864 atomic regions from SNP 178968 to 179568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,905 DEBUG Processing 580/909 atomic regions from SNP 173934 to 174534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,987 DEBUG Processing 361/653 atomic regions from SNP 108044 to 108644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,997 DEBUG Processing 456/1139 atomic regions from SNP 136652 to 137252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,053 DEBUG Processing 44/238 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:05,069 DEBUG Processing 480/1030 atomic regions from SNP 143831 to 144431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,099 DEBUG Processing 598/864 atomic regions from SNP 179268 to 179868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,141 DEBUG Processing 581/909 atomic regions from SNP 174234 to 174834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,207 DEBUG Processing 362/653 atomic regions from SNP 108344 to 108944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,247 DEBUG Processing 457/1139 atomic regions from SNP 136952 to 137552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,262 DEBUG Processing 45/238 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:05,322 DEBUG Processing 481/1030 atomic regions from SNP 144131 to 144731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,334 DEBUG Processing 599/864 atomic regions from SNP 179568 to 180168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,392 DEBUG Processing 582/909 atomic regions from SNP 174534 to 175134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,428 DEBUG Processing 363/653 atomic regions from SNP 108644 to 109244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,473 DEBUG Processing 46/238 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:05,500 DEBUG Processing 458/1139 atomic regions from SNP 137252 to 137852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,564 DEBUG Processing 482/1030 atomic regions from SNP 144431 to 145031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,568 DEBUG Processing 600/864 atomic regions from SNP 179868 to 180468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,644 DEBUG Processing 583/909 atomic regions from SNP 174834 to 175434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,655 DEBUG Processing 364/653 atomic regions from SNP 108944 to 109544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,687 DEBUG Processing 47/238 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:05,750 DEBUG Processing 459/1139 atomic regions from SNP 137552 to 138152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,803 DEBUG Processing 601/864 atomic regions from SNP 180168 to 180768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,803 DEBUG Processing 483/1030 atomic regions from SNP 144731 to 145331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,899 DEBUG Processing 365/653 atomic regions from SNP 109244 to 109844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,899 DEBUG Processing 48/238 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:05,901 DEBUG Processing 584/909 atomic regions from SNP 175134 to 175734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,999 DEBUG Processing 460/1139 atomic regions from SNP 137852 to 138452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,017 DEBUG Processing 602/864 atomic regions from SNP 180468 to 181068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,046 DEBUG Processing 484/1030 atomic regions from SNP 145031 to 145631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,130 DEBUG Processing 49/238 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:06,148 DEBUG Processing 366/653 atomic regions from SNP 109544 to 110144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,159 DEBUG Processing 585/909 atomic regions from SNP 175434 to 176034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,231 DEBUG Processing 603/864 atomic regions from SNP 180768 to 181368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,248 DEBUG Processing 461/1139 atomic regions from SNP 138152 to 138752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,297 DEBUG Processing 485/1030 atomic regions from SNP 145331 to 145931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,352 DEBUG Processing 50/238 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:06,399 DEBUG Processing 367/653 atomic regions from SNP 109844 to 110444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,414 DEBUG Processing 586/909 atomic regions from SNP 175734 to 176334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,446 DEBUG Processing 604/864 atomic regions from SNP 181068 to 181668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,500 DEBUG Processing 462/1139 atomic regions from SNP 138452 to 139052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,538 DEBUG Processing 486/1030 atomic regions from SNP 145631 to 146231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,559 DEBUG Processing 51/238 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:06,648 DEBUG Processing 368/653 atomic regions from SNP 110144 to 110744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,660 DEBUG Processing 605/864 atomic regions from SNP 181368 to 181968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,663 DEBUG Processing 587/909 atomic regions from SNP 176034 to 176634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,751 DEBUG Processing 463/1139 atomic regions from SNP 138752 to 139352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,772 DEBUG Processing 52/238 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:06,780 DEBUG Processing 487/1030 atomic regions from SNP 145931 to 146531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,875 DEBUG Processing 606/864 atomic regions from SNP 181668 to 182268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,889 DEBUG Processing 588/909 atomic regions from SNP 176334 to 176934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,893 DEBUG Processing 369/653 atomic regions from SNP 110444 to 111044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,985 DEBUG Processing 53/238 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:07,003 DEBUG Processing 464/1139 atomic regions from SNP 139052 to 139652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,029 DEBUG Processing 488/1030 atomic regions from SNP 146231 to 146831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,095 DEBUG Processing 607/864 atomic regions from SNP 181968 to 182568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,131 DEBUG Processing 370/653 atomic regions from SNP 110744 to 111344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,136 DEBUG Processing 589/909 atomic regions from SNP 176634 to 177234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,202 DEBUG Processing 54/238 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:07,254 DEBUG Processing 465/1139 atomic regions from SNP 139352 to 139952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,311 DEBUG Processing 489/1030 atomic regions from SNP 146531 to 147131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,338 DEBUG Processing 608/864 atomic regions from SNP 182268 to 182868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,374 DEBUG Processing 371/653 atomic regions from SNP 111044 to 111644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,390 DEBUG Processing 590/909 atomic regions from SNP 176934 to 177534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,410 DEBUG Processing 55/238 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:07,502 DEBUG Processing 466/1139 atomic regions from SNP 139652 to 140252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,578 DEBUG Processing 609/864 atomic regions from SNP 182568 to 183168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,590 DEBUG Processing 490/1030 atomic regions from SNP 146831 to 147431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,617 DEBUG Processing 56/238 atomic regions from SNP 16555 to 17155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:07,620 DEBUG Processing 372/653 atomic regions from SNP 111344 to 111944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,647 DEBUG Processing 591/909 atomic regions from SNP 177234 to 177834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,750 DEBUG Processing 467/1139 atomic regions from SNP 139952 to 140552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,824 DEBUG Processing 610/864 atomic regions from SNP 182868 to 183468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,834 DEBUG Processing 57/238 atomic regions from SNP 16855 to 17455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:07,865 DEBUG Processing 491/1030 atomic regions from SNP 147131 to 147731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,871 DEBUG Processing 373/653 atomic regions from SNP 111644 to 112244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,900 DEBUG Processing 592/909 atomic regions from SNP 177534 to 178134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,016 DEBUG Processing 468/1139 atomic regions from SNP 140252 to 140852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,041 DEBUG Processing 58/238 atomic regions from SNP 17155 to 17755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:08,066 DEBUG Processing 611/864 atomic regions from SNP 183168 to 183768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,121 DEBUG Processing 374/653 atomic regions from SNP 111944 to 112544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,124 DEBUG Processing 492/1030 atomic regions from SNP 147431 to 148031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,125 DEBUG Processing 593/909 atomic regions from SNP 177834 to 178434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,252 DEBUG Processing 59/238 atomic regions from SNP 17455 to 18055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:08,279 DEBUG Processing 469/1139 atomic regions from SNP 140552 to 141152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,309 DEBUG Processing 612/864 atomic regions from SNP 183468 to 184068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,347 DEBUG Processing 594/909 atomic regions from SNP 178134 to 178734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,358 DEBUG Processing 375/653 atomic regions from SNP 112244 to 112844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,374 DEBUG Processing 493/1030 atomic regions from SNP 147731 to 148331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,486 DEBUG Processing 60/238 atomic regions from SNP 17755 to 18355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:08,530 DEBUG Processing 470/1139 atomic regions from SNP 140852 to 141452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,540 DEBUG Processing 613/864 atomic regions from SNP 183768 to 184368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,571 DEBUG Processing 595/909 atomic regions from SNP 178434 to 179034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,585 DEBUG Processing 376/653 atomic regions from SNP 112544 to 113144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,616 DEBUG Processing 494/1030 atomic regions from SNP 148031 to 148631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,705 DEBUG Processing 61/238 atomic regions from SNP 18055 to 18655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:08,770 DEBUG Processing 614/864 atomic regions from SNP 184068 to 184668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,799 DEBUG Processing 596/909 atomic regions from SNP 178734 to 179334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,806 DEBUG Processing 471/1139 atomic regions from SNP 141152 to 141752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,807 DEBUG Processing 377/653 atomic regions from SNP 112844 to 113444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,860 DEBUG Processing 495/1030 atomic regions from SNP 148331 to 148931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,933 DEBUG Processing 62/238 atomic regions from SNP 18355 to 18955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:09,011 DEBUG Processing 615/864 atomic regions from SNP 184368 to 184968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,025 DEBUG Processing 597/909 atomic regions from SNP 179034 to 179634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,025 DEBUG Processing 378/653 atomic regions from SNP 113144 to 113744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,073 DEBUG Processing 472/1139 atomic regions from SNP 141452 to 142052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,102 DEBUG Processing 496/1030 atomic regions from SNP 148631 to 149231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,136 DEBUG Processing 63/238 atomic regions from SNP 18655 to 19255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:09,243 DEBUG Processing 616/864 atomic regions from SNP 184668 to 185268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,249 DEBUG Processing 598/909 atomic regions from SNP 179334 to 179934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,263 DEBUG Processing 379/653 atomic regions from SNP 113444 to 114044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,325 DEBUG Processing 473/1139 atomic regions from SNP 141752 to 142352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,340 DEBUG Processing 64/238 atomic regions from SNP 18955 to 19555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:09,358 DEBUG Processing 497/1030 atomic regions from SNP 148931 to 149531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,458 DEBUG Processing 617/864 atomic regions from SNP 184968 to 185568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,481 DEBUG Processing 599/909 atomic regions from SNP 179634 to 180234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,504 DEBUG Processing 380/653 atomic regions from SNP 113744 to 114344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,546 DEBUG Processing 65/238 atomic regions from SNP 19255 to 19855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:09,578 DEBUG Processing 474/1139 atomic regions from SNP 142052 to 142652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,600 DEBUG Processing 498/1030 atomic regions from SNP 149231 to 149831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,673 DEBUG Processing 618/864 atomic regions from SNP 185268 to 185868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,735 DEBUG Processing 381/653 atomic regions from SNP 114044 to 114644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,738 DEBUG Processing 600/909 atomic regions from SNP 179934 to 180534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,751 DEBUG Processing 66/238 atomic regions from SNP 19555 to 20155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:09,828 DEBUG Processing 475/1139 atomic regions from SNP 142352 to 142952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,840 DEBUG Processing 499/1030 atomic regions from SNP 149531 to 150131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,886 DEBUG Processing 619/864 atomic regions from SNP 185568 to 186168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,956 DEBUG Processing 67/238 atomic regions from SNP 19855 to 20455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:09,967 DEBUG Processing 382/653 atomic regions from SNP 114344 to 114944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,990 DEBUG Processing 601/909 atomic regions from SNP 180234 to 180834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,077 DEBUG Processing 476/1139 atomic regions from SNP 142652 to 143252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,081 DEBUG Processing 500/1030 atomic regions from SNP 149831 to 150431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,100 DEBUG Processing 620/864 atomic regions from SNP 185868 to 186468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,162 DEBUG Processing 68/238 atomic regions from SNP 20155 to 20755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:10,215 DEBUG Processing 383/653 atomic regions from SNP 114644 to 115244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,242 DEBUG Processing 602/909 atomic regions from SNP 180534 to 181134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,327 DEBUG Processing 477/1139 atomic regions from SNP 142952 to 143552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,331 DEBUG Processing 621/864 atomic regions from SNP 186168 to 186768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,334 DEBUG Processing 501/1030 atomic regions from SNP 150131 to 150731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,367 DEBUG Processing 69/238 atomic regions from SNP 20455 to 21055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:10,458 DEBUG Processing 384/653 atomic regions from SNP 114944 to 115544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,495 DEBUG Processing 603/909 atomic regions from SNP 180834 to 181434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,574 DEBUG Processing 70/238 atomic regions from SNP 20755 to 21355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:10,581 DEBUG Processing 478/1139 atomic regions from SNP 143252 to 143852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,581 DEBUG Processing 622/864 atomic regions from SNP 186468 to 187068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,581 DEBUG Processing 502/1030 atomic regions from SNP 150431 to 151031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,703 DEBUG Processing 385/653 atomic regions from SNP 115244 to 115844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,756 DEBUG Processing 604/909 atomic regions from SNP 181134 to 181734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,787 DEBUG Processing 71/238 atomic regions from SNP 21055 to 21655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:10,811 DEBUG Processing 623/864 atomic regions from SNP 186768 to 187368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,832 DEBUG Processing 503/1030 atomic regions from SNP 150731 to 151331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,837 DEBUG Processing 479/1139 atomic regions from SNP 143552 to 144152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,921 DEBUG Processing 386/653 atomic regions from SNP 115544 to 116144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,994 DEBUG Processing 72/238 atomic regions from SNP 21355 to 21955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,021 DEBUG Processing 605/909 atomic regions from SNP 181434 to 182034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,032 DEBUG Processing 624/864 atomic regions from SNP 187068 to 187668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,077 DEBUG Processing 504/1030 atomic regions from SNP 151031 to 151631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,090 DEBUG Processing 480/1139 atomic regions from SNP 143852 to 144452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,141 DEBUG Processing 387/653 atomic regions from SNP 115844 to 116444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,205 DEBUG Processing 73/238 atomic regions from SNP 21655 to 22255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,252 DEBUG Processing 625/864 atomic regions from SNP 187368 to 187968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,283 DEBUG Processing 606/909 atomic regions from SNP 181734 to 182334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,331 DEBUG Processing 505/1030 atomic regions from SNP 151331 to 151931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,337 DEBUG Processing 481/1139 atomic regions from SNP 144152 to 144752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,358 DEBUG Processing 388/653 atomic regions from SNP 116144 to 116744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,412 DEBUG Processing 74/238 atomic regions from SNP 21955 to 22555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,469 DEBUG Processing 626/864 atomic regions from SNP 187668 to 188268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,546 DEBUG Processing 607/909 atomic regions from SNP 182034 to 182634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,572 DEBUG Processing 506/1030 atomic regions from SNP 151631 to 152231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,575 DEBUG Processing 389/653 atomic regions from SNP 116444 to 117044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,584 DEBUG Processing 482/1139 atomic regions from SNP 144452 to 145052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,618 DEBUG Processing 75/238 atomic regions from SNP 22255 to 22855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,684 DEBUG Processing 627/864 atomic regions from SNP 187968 to 188568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,793 DEBUG Processing 390/653 atomic regions from SNP 116744 to 117344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,806 DEBUG Processing 608/909 atomic regions from SNP 182334 to 182934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,814 DEBUG Processing 507/1030 atomic regions from SNP 151931 to 152531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,827 DEBUG Processing 76/238 atomic regions from SNP 22555 to 23155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,861 DEBUG Processing 483/1139 atomic regions from SNP 144752 to 145352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,898 DEBUG Processing 628/864 atomic regions from SNP 188268 to 188868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,010 DEBUG Processing 391/653 atomic regions from SNP 117044 to 117644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,037 DEBUG Processing 77/238 atomic regions from SNP 22855 to 23455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:12,060 DEBUG Processing 508/1030 atomic regions from SNP 152231 to 152831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,061 DEBUG Processing 609/909 atomic regions from SNP 182634 to 183234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,115 DEBUG Processing 629/864 atomic regions from SNP 188568 to 189168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,141 DEBUG Processing 484/1139 atomic regions from SNP 145052 to 145652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,228 DEBUG Processing 392/653 atomic regions from SNP 117344 to 117944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,244 DEBUG Processing 78/238 atomic regions from SNP 23155 to 23755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:12,315 DEBUG Processing 610/909 atomic regions from SNP 182934 to 183534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,318 DEBUG Processing 509/1030 atomic regions from SNP 152531 to 153131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,336 DEBUG Processing 630/864 atomic regions from SNP 188868 to 189468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,412 DEBUG Processing 485/1139 atomic regions from SNP 145352 to 145952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,448 DEBUG Processing 79/238 atomic regions from SNP 23455 to 24055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:12,449 DEBUG Processing 393/653 atomic regions from SNP 117644 to 118244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,562 DEBUG Processing 510/1030 atomic regions from SNP 152831 to 153431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,565 DEBUG Processing 611/909 atomic regions from SNP 183234 to 183834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,578 DEBUG Processing 631/864 atomic regions from SNP 189168 to 189768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,654 DEBUG Processing 80/238 atomic regions from SNP 23755 to 24355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:12,669 DEBUG Processing 394/653 atomic regions from SNP 117944 to 118544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,678 DEBUG Processing 486/1139 atomic regions from SNP 145652 to 146252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,787 DEBUG Processing 612/909 atomic regions from SNP 183534 to 184134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,804 DEBUG Processing 511/1030 atomic regions from SNP 153131 to 153731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,831 DEBUG Processing 632/864 atomic regions from SNP 189468 to 190068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,864 DEBUG Processing 81/238 atomic regions from SNP 24055 to 24655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:12,889 DEBUG Processing 395/653 atomic regions from SNP 118244 to 118844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,950 DEBUG Processing 487/1139 atomic regions from SNP 145952 to 146552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,010 DEBUG Processing 613/909 atomic regions from SNP 183834 to 184434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,046 DEBUG Processing 512/1030 atomic regions from SNP 153431 to 154031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,084 DEBUG Processing 633/864 atomic regions from SNP 189768 to 190368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,093 DEBUG Processing 82/238 atomic regions from SNP 24355 to 24955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:13,109 DEBUG Processing 396/653 atomic regions from SNP 118544 to 119144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,232 DEBUG Processing 488/1139 atomic regions from SNP 146252 to 146852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,235 DEBUG Processing 614/909 atomic regions from SNP 184134 to 184734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,302 DEBUG Processing 513/1030 atomic regions from SNP 153731 to 154331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,322 DEBUG Processing 83/238 atomic regions from SNP 24655 to 25255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:13,328 DEBUG Processing 397/653 atomic regions from SNP 118844 to 119444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,336 DEBUG Processing 634/864 atomic regions from SNP 190068 to 190668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,458 DEBUG Processing 615/909 atomic regions from SNP 184434 to 185034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,516 DEBUG Processing 489/1139 atomic regions from SNP 146552 to 147152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,534 DEBUG Processing 84/238 atomic regions from SNP 24955 to 25555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:13,551 DEBUG Processing 398/653 atomic regions from SNP 119144 to 119744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,552 DEBUG Processing 514/1030 atomic regions from SNP 154031 to 154631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,586 DEBUG Processing 635/864 atomic regions from SNP 190368 to 190968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,679 DEBUG Processing 616/909 atomic regions from SNP 184734 to 185334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,752 DEBUG Processing 85/238 atomic regions from SNP 25255 to 25855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:13,772 DEBUG Processing 399/653 atomic regions from SNP 119444 to 120044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,797 DEBUG Processing 515/1030 atomic regions from SNP 154331 to 154931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,800 DEBUG Processing 490/1139 atomic regions from SNP 146852 to 147452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,836 DEBUG Processing 636/864 atomic regions from SNP 190668 to 191268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,903 DEBUG Processing 617/909 atomic regions from SNP 185034 to 185634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,960 DEBUG Processing 86/238 atomic regions from SNP 25555 to 26155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:13,991 DEBUG Processing 400/653 atomic regions from SNP 119744 to 120344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,039 DEBUG Processing 516/1030 atomic regions from SNP 154631 to 155231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,076 DEBUG Processing 491/1139 atomic regions from SNP 147152 to 147752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,088 DEBUG Processing 637/864 atomic regions from SNP 190968 to 191568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,128 DEBUG Processing 618/909 atomic regions from SNP 185334 to 185934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,164 DEBUG Processing 87/238 atomic regions from SNP 25855 to 26455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:14,208 DEBUG Processing 401/653 atomic regions from SNP 120044 to 120644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,289 DEBUG Processing 517/1030 atomic regions from SNP 154931 to 155531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,343 DEBUG Processing 638/864 atomic regions from SNP 191268 to 191868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,348 DEBUG Processing 492/1139 atomic regions from SNP 147452 to 148052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,356 DEBUG Processing 619/909 atomic regions from SNP 185634 to 186234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,372 DEBUG Processing 88/238 atomic regions from SNP 26155 to 26755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:14,425 DEBUG Processing 402/653 atomic regions from SNP 120344 to 120944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,531 DEBUG Processing 518/1030 atomic regions from SNP 155231 to 155831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,586 DEBUG Processing 89/238 atomic regions from SNP 26455 to 27055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:14,588 DEBUG Processing 620/909 atomic regions from SNP 185934 to 186534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,602 DEBUG Processing 639/864 atomic regions from SNP 191568 to 192168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,616 DEBUG Processing 493/1139 atomic regions from SNP 147752 to 148352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,646 DEBUG Processing 403/653 atomic regions from SNP 120644 to 121244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,773 DEBUG Processing 519/1030 atomic regions from SNP 155531 to 156131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,796 DEBUG Processing 90/238 atomic regions from SNP 26755 to 27355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:14,813 DEBUG Processing 621/909 atomic regions from SNP 186234 to 186834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,857 DEBUG Processing 640/864 atomic regions from SNP 191868 to 192468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,867 DEBUG Processing 404/653 atomic regions from SNP 120944 to 121544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,900 DEBUG Processing 494/1139 atomic regions from SNP 148052 to 148652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,002 DEBUG Processing 91/238 atomic regions from SNP 27055 to 27655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:15,012 DEBUG Processing 520/1030 atomic regions from SNP 155831 to 156431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,039 DEBUG Processing 622/909 atomic regions from SNP 186534 to 187134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,088 DEBUG Processing 405/653 atomic regions from SNP 121244 to 121844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,107 DEBUG Processing 641/864 atomic regions from SNP 192168 to 192768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,177 DEBUG Processing 495/1139 atomic regions from SNP 148352 to 148952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,206 DEBUG Processing 92/238 atomic regions from SNP 27355 to 27955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:15,260 DEBUG Processing 623/909 atomic regions from SNP 186834 to 187434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,286 DEBUG Processing 521/1030 atomic regions from SNP 156131 to 156731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,310 DEBUG Processing 406/653 atomic regions from SNP 121544 to 122144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,355 DEBUG Processing 642/864 atomic regions from SNP 192468 to 193068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,415 DEBUG Processing 93/238 atomic regions from SNP 27655 to 28255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:15,444 DEBUG Processing 496/1139 atomic regions from SNP 148652 to 149252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,482 DEBUG Processing 624/909 atomic regions from SNP 187134 to 187734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,537 DEBUG Processing 407/653 atomic regions from SNP 121844 to 122444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,542 DEBUG Processing 522/1030 atomic regions from SNP 156431 to 157031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,605 DEBUG Processing 643/864 atomic regions from SNP 192768 to 193368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,633 DEBUG Processing 94/238 atomic regions from SNP 27955 to 28555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:15,703 DEBUG Processing 625/909 atomic regions from SNP 187434 to 188034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,726 DEBUG Processing 497/1139 atomic regions from SNP 148952 to 149552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,763 DEBUG Processing 408/653 atomic regions from SNP 122144 to 122744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,808 DEBUG Processing 523/1030 atomic regions from SNP 156731 to 157331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,833 DEBUG Processing 644/864 atomic regions from SNP 193068 to 193668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,861 DEBUG Processing 95/238 atomic regions from SNP 28255 to 28855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:15,925 DEBUG Processing 626/909 atomic regions from SNP 187734 to 188334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,987 DEBUG Processing 409/653 atomic regions from SNP 122444 to 123044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,007 DEBUG Processing 498/1139 atomic regions from SNP 149252 to 149852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,073 DEBUG Processing 645/864 atomic regions from SNP 193368 to 193968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,077 DEBUG Processing 96/238 atomic regions from SNP 28555 to 29155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:16,083 DEBUG Processing 524/1030 atomic regions from SNP 157031 to 157631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,147 DEBUG Processing 627/909 atomic regions from SNP 188034 to 188634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,211 DEBUG Processing 410/653 atomic regions from SNP 122744 to 123344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,281 DEBUG Processing 499/1139 atomic regions from SNP 149552 to 150152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,294 DEBUG Processing 97/238 atomic regions from SNP 28855 to 29455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:16,313 DEBUG Processing 646/864 atomic regions from SNP 193668 to 194268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,371 DEBUG Processing 628/909 atomic regions from SNP 188334 to 188934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,378 DEBUG Processing 525/1030 atomic regions from SNP 157331 to 157931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,432 DEBUG Processing 411/653 atomic regions from SNP 123044 to 123644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,505 DEBUG Processing 98/238 atomic regions from SNP 29155 to 29755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:16,531 DEBUG Processing 647/864 atomic regions from SNP 193968 to 194568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,548 DEBUG Processing 500/1139 atomic regions from SNP 149852 to 150452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,597 DEBUG Processing 629/909 atomic regions from SNP 188634 to 189234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,648 DEBUG Processing 526/1030 atomic regions from SNP 157631 to 158231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,654 DEBUG Processing 412/653 atomic regions from SNP 123344 to 123944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,711 DEBUG Processing 99/238 atomic regions from SNP 29455 to 30055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:16,750 DEBUG Processing 648/864 atomic regions from SNP 194268 to 194868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,822 DEBUG Processing 630/909 atomic regions from SNP 188934 to 189534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,833 DEBUG Processing 501/1139 atomic regions from SNP 150152 to 150752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,879 DEBUG Processing 413/653 atomic regions from SNP 123644 to 124244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,911 DEBUG Processing 527/1030 atomic regions from SNP 157931 to 158531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,918 DEBUG Processing 100/238 atomic regions from SNP 29755 to 30355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:16,964 DEBUG Processing 649/864 atomic regions from SNP 194568 to 195168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,047 DEBUG Processing 631/909 atomic regions from SNP 189234 to 189834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,108 DEBUG Processing 502/1139 atomic regions from SNP 150452 to 151052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,128 DEBUG Processing 101/238 atomic regions from SNP 30055 to 30655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:17,130 DEBUG Processing 414/653 atomic regions from SNP 123944 to 124544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,176 DEBUG Processing 528/1030 atomic regions from SNP 158231 to 158831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,180 DEBUG Processing 650/864 atomic regions from SNP 194868 to 195468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,269 DEBUG Processing 632/909 atomic regions from SNP 189534 to 190134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,338 DEBUG Processing 102/238 atomic regions from SNP 30355 to 30955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:17,368 DEBUG Processing 415/653 atomic regions from SNP 124244 to 124844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,382 DEBUG Processing 503/1139 atomic regions from SNP 150752 to 151352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,398 DEBUG Processing 651/864 atomic regions from SNP 195168 to 195768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,438 DEBUG Processing 529/1030 atomic regions from SNP 158531 to 159131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,491 DEBUG Processing 633/909 atomic regions from SNP 189834 to 190434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,546 DEBUG Processing 103/238 atomic regions from SNP 30655 to 31255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:17,594 DEBUG Processing 416/653 atomic regions from SNP 124544 to 125144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,639 DEBUG Processing 652/864 atomic regions from SNP 195468 to 196068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,642 DEBUG Processing 504/1139 atomic regions from SNP 151052 to 151652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,713 DEBUG Processing 634/909 atomic regions from SNP 190134 to 190734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,716 DEBUG Processing 530/1030 atomic regions from SNP 158831 to 159431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,753 DEBUG Processing 104/238 atomic regions from SNP 30955 to 31555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:17,819 DEBUG Processing 417/653 atomic regions from SNP 124844 to 125444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,890 DEBUG Processing 653/864 atomic regions from SNP 195768 to 196368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,896 DEBUG Processing 505/1139 atomic regions from SNP 151352 to 151952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,937 DEBUG Processing 635/909 atomic regions from SNP 190434 to 191034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,960 DEBUG Processing 105/238 atomic regions from SNP 31255 to 31855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:17,992 DEBUG Processing 531/1030 atomic regions from SNP 159131 to 159731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,066 DEBUG Processing 418/653 atomic regions from SNP 125144 to 125744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,141 DEBUG Processing 654/864 atomic regions from SNP 196068 to 196668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,148 DEBUG Processing 506/1139 atomic regions from SNP 151652 to 152252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,164 DEBUG Processing 636/909 atomic regions from SNP 190734 to 191334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,169 DEBUG Processing 106/238 atomic regions from SNP 31555 to 32155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:18,273 DEBUG Processing 532/1030 atomic regions from SNP 159431 to 160031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,320 DEBUG Processing 419/653 atomic regions from SNP 125444 to 126044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,368 DEBUG Processing 655/864 atomic regions from SNP 196368 to 196968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,381 DEBUG Processing 107/238 atomic regions from SNP 31855 to 32455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:18,393 DEBUG Processing 637/909 atomic regions from SNP 191034 to 191634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,401 DEBUG Processing 507/1139 atomic regions from SNP 151952 to 152552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,554 DEBUG Processing 533/1030 atomic regions from SNP 159731 to 160331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,574 DEBUG Processing 420/653 atomic regions from SNP 125744 to 126344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,588 DEBUG Processing 656/864 atomic regions from SNP 196668 to 197268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,590 DEBUG Processing 108/238 atomic regions from SNP 32155 to 32755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:18,622 DEBUG Processing 638/909 atomic regions from SNP 191334 to 191934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,653 DEBUG Processing 508/1139 atomic regions from SNP 152252 to 152852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,800 DEBUG Processing 109/238 atomic regions from SNP 32455 to 33055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:18,806 DEBUG Processing 657/864 atomic regions from SNP 196968 to 197568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,808 DEBUG Processing 421/653 atomic regions from SNP 126044 to 126644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,814 DEBUG Processing 534/1030 atomic regions from SNP 160031 to 160631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,851 DEBUG Processing 639/909 atomic regions from SNP 191634 to 192234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,907 DEBUG Processing 509/1139 atomic regions from SNP 152552 to 153152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,009 DEBUG Processing 110/238 atomic regions from SNP 32755 to 33355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:19,041 DEBUG Processing 422/653 atomic regions from SNP 126344 to 126944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,046 DEBUG Processing 658/864 atomic regions from SNP 197268 to 197868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,064 DEBUG Processing 535/1030 atomic regions from SNP 160331 to 160931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,079 DEBUG Processing 640/909 atomic regions from SNP 191934 to 192534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,157 DEBUG Processing 510/1139 atomic regions from SNP 152852 to 153452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,214 DEBUG Processing 111/238 atomic regions from SNP 33055 to 33655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:19,286 DEBUG Processing 659/864 atomic regions from SNP 197568 to 198168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,297 DEBUG Processing 423/653 atomic regions from SNP 126644 to 127244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,305 DEBUG Processing 641/909 atomic regions from SNP 192234 to 192834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,323 DEBUG Processing 536/1030 atomic regions from SNP 160631 to 161231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,410 DEBUG Processing 511/1139 atomic regions from SNP 153152 to 153752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,417 DEBUG Processing 112/238 atomic regions from SNP 33355 to 33955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:19,516 DEBUG Processing 660/864 atomic regions from SNP 197868 to 198468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,528 DEBUG Processing 642/909 atomic regions from SNP 192534 to 193134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,546 DEBUG Processing 424/653 atomic regions from SNP 126944 to 127544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,575 DEBUG Processing 537/1030 atomic regions from SNP 160931 to 161531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,624 DEBUG Processing 113/238 atomic regions from SNP 33655 to 34255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:19,669 DEBUG Processing 512/1139 atomic regions from SNP 153452 to 154052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,752 DEBUG Processing 643/909 atomic regions from SNP 192834 to 193434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,754 DEBUG Processing 661/864 atomic regions from SNP 198168 to 198768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,786 DEBUG Processing 425/653 atomic regions from SNP 127244 to 127844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,831 DEBUG Processing 114/238 atomic regions from SNP 33955 to 34555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:19,832 DEBUG Processing 538/1030 atomic regions from SNP 161231 to 161831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,945 DEBUG Processing 513/1139 atomic regions from SNP 153752 to 154352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,975 DEBUG Processing 644/909 atomic regions from SNP 193134 to 193734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,992 DEBUG Processing 662/864 atomic regions from SNP 198468 to 199068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,037 DEBUG Processing 426/653 atomic regions from SNP 127544 to 128144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,038 DEBUG Processing 115/238 atomic regions from SNP 34255 to 34855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:20,090 DEBUG Processing 539/1030 atomic regions from SNP 161531 to 162131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,201 DEBUG Processing 645/909 atomic regions from SNP 193434 to 194034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,224 DEBUG Processing 663/864 atomic regions from SNP 198768 to 199368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,231 DEBUG Processing 514/1139 atomic regions from SNP 154052 to 154652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,246 DEBUG Processing 116/238 atomic regions from SNP 34555 to 35155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:20,296 DEBUG Processing 427/653 atomic regions from SNP 127844 to 128444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,356 DEBUG Processing 540/1030 atomic regions from SNP 161831 to 162431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,431 DEBUG Processing 646/909 atomic regions from SNP 193734 to 194334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,446 DEBUG Processing 664/864 atomic regions from SNP 199068 to 199668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,456 DEBUG Processing 117/238 atomic regions from SNP 34855 to 35455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:20,508 DEBUG Processing 515/1139 atomic regions from SNP 154352 to 154952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,543 DEBUG Processing 428/653 atomic regions from SNP 128144 to 128744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,603 DEBUG Processing 541/1030 atomic regions from SNP 162131 to 162731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,659 DEBUG Processing 647/909 atomic regions from SNP 194034 to 194634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,665 DEBUG Processing 118/238 atomic regions from SNP 35155 to 35755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:20,666 DEBUG Processing 665/864 atomic regions from SNP 199368 to 199968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,783 DEBUG Processing 429/653 atomic regions from SNP 128444 to 129044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,783 DEBUG Processing 516/1139 atomic regions from SNP 154652 to 155252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,865 DEBUG Processing 542/1030 atomic regions from SNP 162431 to 163031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,877 DEBUG Processing 119/238 atomic regions from SNP 35455 to 36055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:20,886 DEBUG Processing 666/864 atomic regions from SNP 199668 to 200268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,910 DEBUG Processing 648/909 atomic regions from SNP 194334 to 194934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,025 DEBUG Processing 430/653 atomic regions from SNP 128744 to 129344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,028 DEBUG Processing 517/1139 atomic regions from SNP 154952 to 155552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,090 DEBUG Processing 120/238 atomic regions from SNP 35755 to 36355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:21,103 DEBUG Processing 667/864 atomic regions from SNP 199968 to 200568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,126 DEBUG Processing 543/1030 atomic regions from SNP 162731 to 163331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,161 DEBUG Processing 649/909 atomic regions from SNP 194634 to 195234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,276 DEBUG Processing 431/653 atomic regions from SNP 129044 to 129644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,278 DEBUG Processing 518/1139 atomic regions from SNP 155252 to 155852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,301 DEBUG Processing 121/238 atomic regions from SNP 36055 to 36655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:21,321 DEBUG Processing 668/864 atomic regions from SNP 200268 to 200868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,394 DEBUG Processing 544/1030 atomic regions from SNP 163031 to 163631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,400 DEBUG Processing 650/909 atomic regions from SNP 194934 to 195534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,508 DEBUG Processing 122/238 atomic regions from SNP 36355 to 36955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:21,523 DEBUG Processing 432/653 atomic regions from SNP 129344 to 129944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,537 DEBUG Processing 519/1139 atomic regions from SNP 155552 to 156152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,539 DEBUG Processing 669/864 atomic regions from SNP 200568 to 201168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,633 DEBUG Processing 651/909 atomic regions from SNP 195234 to 195834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,656 DEBUG Processing 545/1030 atomic regions from SNP 163331 to 163931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,715 DEBUG Processing 123/238 atomic regions from SNP 36655 to 37255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:21,757 DEBUG Processing 670/864 atomic regions from SNP 200868 to 201468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,773 DEBUG Processing 433/653 atomic regions from SNP 129644 to 130244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,819 DEBUG Processing 520/1139 atomic regions from SNP 155852 to 156452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,886 DEBUG Processing 652/909 atomic regions from SNP 195534 to 196134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,898 DEBUG Processing 546/1030 atomic regions from SNP 163631 to 164231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,919 DEBUG Processing 124/238 atomic regions from SNP 36955 to 37555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:21,983 DEBUG Processing 671/864 atomic regions from SNP 201168 to 201768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,020 DEBUG Processing 434/653 atomic regions from SNP 129944 to 130544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,105 DEBUG Processing 521/1139 atomic regions from SNP 156152 to 156752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,125 DEBUG Processing 125/238 atomic regions from SNP 37255 to 37855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:22,145 DEBUG Processing 653/909 atomic regions from SNP 195834 to 196434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,146 DEBUG Processing 547/1030 atomic regions from SNP 163931 to 164531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,228 DEBUG Processing 672/864 atomic regions from SNP 201468 to 202068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,265 DEBUG Processing 435/653 atomic regions from SNP 130244 to 130844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,350 DEBUG Processing 126/238 atomic regions from SNP 37555 to 38155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:22,391 DEBUG Processing 522/1139 atomic regions from SNP 156452 to 157052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,401 DEBUG Processing 654/909 atomic regions from SNP 196134 to 196734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,405 DEBUG Processing 548/1030 atomic regions from SNP 164231 to 164831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,462 DEBUG Processing 673/864 atomic regions from SNP 201768 to 202368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,495 DEBUG Processing 436/653 atomic regions from SNP 130544 to 131144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,592 DEBUG Processing 127/238 atomic regions from SNP 37855 to 38455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:22,653 DEBUG Processing 549/1030 atomic regions from SNP 164531 to 165131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,656 DEBUG Processing 655/909 atomic regions from SNP 196434 to 197034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,662 DEBUG Processing 523/1139 atomic regions from SNP 156752 to 157352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,713 DEBUG Processing 674/864 atomic regions from SNP 202068 to 202668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,720 DEBUG Processing 437/653 atomic regions from SNP 130844 to 131444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,809 DEBUG Processing 128/238 atomic regions from SNP 38155 to 38755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:22,888 DEBUG Processing 656/909 atomic regions from SNP 196734 to 197334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,899 DEBUG Processing 550/1030 atomic regions from SNP 164831 to 165431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,938 DEBUG Processing 524/1139 atomic regions from SNP 157052 to 157652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,960 DEBUG Processing 675/864 atomic regions from SNP 202368 to 202968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,972 DEBUG Processing 438/653 atomic regions from SNP 131144 to 131744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,021 DEBUG Processing 129/238 atomic regions from SNP 38455 to 39055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:23,113 DEBUG Processing 657/909 atomic regions from SNP 197034 to 197634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,143 DEBUG Processing 551/1030 atomic regions from SNP 165131 to 165731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,209 DEBUG Processing 676/864 atomic regions from SNP 202668 to 203268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,216 DEBUG Processing 525/1139 atomic regions from SNP 157352 to 157952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,227 DEBUG Processing 439/653 atomic regions from SNP 131444 to 132044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,247 DEBUG Processing 130/238 atomic regions from SNP 38755 to 39355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:23,335 DEBUG Processing 658/909 atomic regions from SNP 197334 to 197934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,395 DEBUG Processing 552/1030 atomic regions from SNP 165431 to 166031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,443 DEBUG Processing 677/864 atomic regions from SNP 202968 to 203568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,460 DEBUG Processing 131/238 atomic regions from SNP 39055 to 39655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:23,481 DEBUG Processing 440/653 atomic regions from SNP 131744 to 132344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,499 DEBUG Processing 526/1139 atomic regions from SNP 157652 to 158252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,556 DEBUG Processing 659/909 atomic regions from SNP 197634 to 198234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,636 DEBUG Processing 553/1030 atomic regions from SNP 165731 to 166331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,678 DEBUG Processing 132/238 atomic regions from SNP 39355 to 39955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:23,683 DEBUG Processing 678/864 atomic regions from SNP 203268 to 203868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,723 DEBUG Processing 441/653 atomic regions from SNP 132044 to 132644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,770 DEBUG Processing 527/1139 atomic regions from SNP 157952 to 158552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,780 DEBUG Processing 660/909 atomic regions from SNP 197934 to 198534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,877 DEBUG Processing 554/1030 atomic regions from SNP 166031 to 166631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,895 DEBUG Processing 133/238 atomic regions from SNP 39655 to 40255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:23,933 DEBUG Processing 679/864 atomic regions from SNP 203568 to 204168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,951 DEBUG Processing 442/653 atomic regions from SNP 132344 to 132944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,003 DEBUG Processing 661/909 atomic regions from SNP 198234 to 198834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,037 DEBUG Processing 528/1139 atomic regions from SNP 158252 to 158852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,117 DEBUG Processing 555/1030 atomic regions from SNP 166331 to 166931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,143 DEBUG Processing 134/238 atomic regions from SNP 39955 to 40555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:24,178 DEBUG Processing 443/653 atomic regions from SNP 132644 to 133244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,181 DEBUG Processing 680/864 atomic regions from SNP 203868 to 204468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,227 DEBUG Processing 662/909 atomic regions from SNP 198534 to 199134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,311 DEBUG Processing 529/1139 atomic regions from SNP 158552 to 159152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,369 DEBUG Processing 556/1030 atomic regions from SNP 166631 to 167231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,384 DEBUG Processing 135/238 atomic regions from SNP 40255 to 40855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:24,415 DEBUG Processing 444/653 atomic regions from SNP 132944 to 133544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,434 DEBUG Processing 681/864 atomic regions from SNP 204168 to 204768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,452 DEBUG Processing 663/909 atomic regions from SNP 198834 to 199434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,592 DEBUG Processing 530/1139 atomic regions from SNP 158852 to 159452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,614 DEBUG Processing 557/1030 atomic regions from SNP 166931 to 167531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,617 DEBUG Processing 136/238 atomic regions from SNP 40555 to 41155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:24,650 DEBUG Processing 445/653 atomic regions from SNP 133244 to 133844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,674 DEBUG Processing 664/909 atomic regions from SNP 199134 to 199734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,682 DEBUG Processing 682/864 atomic regions from SNP 204468 to 205068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,854 DEBUG Processing 137/238 atomic regions from SNP 40855 to 41455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:24,862 DEBUG Processing 558/1030 atomic regions from SNP 167231 to 167831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,878 DEBUG Processing 531/1139 atomic regions from SNP 159152 to 159752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,894 DEBUG Processing 446/653 atomic regions from SNP 133544 to 134144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,900 DEBUG Processing 665/909 atomic regions from SNP 199434 to 200034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,931 DEBUG Processing 683/864 atomic regions from SNP 204768 to 205368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,085 DEBUG Processing 138/238 atomic regions from SNP 41155 to 41755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:25,112 DEBUG Processing 559/1030 atomic regions from SNP 167531 to 168131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,128 DEBUG Processing 447/653 atomic regions from SNP 133844 to 134444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,131 DEBUG Processing 666/909 atomic regions from SNP 199734 to 200334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,165 DEBUG Processing 532/1139 atomic regions from SNP 159452 to 160052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,183 DEBUG Processing 684/864 atomic regions from SNP 205068 to 205668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,295 DEBUG Processing 139/238 atomic regions from SNP 41455 to 42055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:25,360 DEBUG Processing 667/909 atomic regions from SNP 200034 to 200634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,370 DEBUG Processing 560/1030 atomic regions from SNP 167831 to 168431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,380 DEBUG Processing 448/653 atomic regions from SNP 134144 to 134744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,436 DEBUG Processing 685/864 atomic regions from SNP 205368 to 205968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,450 DEBUG Processing 533/1139 atomic regions from SNP 159752 to 160352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,502 DEBUG Processing 140/238 atomic regions from SNP 41755 to 42355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:25,587 DEBUG Processing 668/909 atomic regions from SNP 200334 to 200934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,617 DEBUG Processing 561/1030 atomic regions from SNP 168131 to 168731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,637 DEBUG Processing 449/653 atomic regions from SNP 134444 to 135044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,692 DEBUG Processing 686/864 atomic regions from SNP 205668 to 206268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,710 DEBUG Processing 141/238 atomic regions from SNP 42055 to 42655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:25,733 DEBUG Processing 534/1139 atomic regions from SNP 160052 to 160652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,812 DEBUG Processing 669/909 atomic regions from SNP 200634 to 201234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,861 DEBUG Processing 562/1030 atomic regions from SNP 168431 to 169031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,887 DEBUG Processing 450/653 atomic regions from SNP 134744 to 135344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,918 DEBUG Processing 142/238 atomic regions from SNP 42355 to 42955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:25,941 DEBUG Processing 687/864 atomic regions from SNP 205968 to 206568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,019 DEBUG Processing 535/1139 atomic regions from SNP 160352 to 160952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,037 DEBUG Processing 670/909 atomic regions from SNP 200934 to 201534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,105 DEBUG Processing 563/1030 atomic regions from SNP 168731 to 169331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,124 DEBUG Processing 143/238 atomic regions from SNP 42655 to 43255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:26,129 DEBUG Processing 451/653 atomic regions from SNP 135044 to 135644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,189 DEBUG Processing 688/864 atomic regions from SNP 206268 to 206868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,262 DEBUG Processing 671/909 atomic regions from SNP 201234 to 201834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,302 DEBUG Processing 536/1139 atomic regions from SNP 160652 to 161252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,332 DEBUG Processing 144/238 atomic regions from SNP 42955 to 43555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:26,349 DEBUG Processing 452/653 atomic regions from SNP 135344 to 135944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,363 DEBUG Processing 564/1030 atomic regions from SNP 169031 to 169631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,441 DEBUG Processing 689/864 atomic regions from SNP 206568 to 207168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,487 DEBUG Processing 672/909 atomic regions from SNP 201534 to 202134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,541 DEBUG Processing 145/238 atomic regions from SNP 43255 to 43855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:26,570 DEBUG Processing 453/653 atomic regions from SNP 135644 to 136244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,574 DEBUG Processing 537/1139 atomic regions from SNP 160952 to 161552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,607 DEBUG Processing 565/1030 atomic regions from SNP 169331 to 169931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,689 DEBUG Processing 690/864 atomic regions from SNP 206868 to 207468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,712 DEBUG Processing 673/909 atomic regions from SNP 201834 to 202434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,750 DEBUG Processing 146/238 atomic regions from SNP 43555 to 44155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:26,790 DEBUG Processing 454/653 atomic regions from SNP 135944 to 136544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,825 DEBUG Processing 538/1139 atomic regions from SNP 161252 to 161852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,853 DEBUG Processing 566/1030 atomic regions from SNP 169631 to 170231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,936 DEBUG Processing 691/864 atomic regions from SNP 207168 to 207768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,939 DEBUG Processing 674/909 atomic regions from SNP 202134 to 202734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,960 DEBUG Processing 147/238 atomic regions from SNP 43855 to 44455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:27,009 DEBUG Processing 455/653 atomic regions from SNP 136244 to 136844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,074 DEBUG Processing 539/1139 atomic regions from SNP 161552 to 162152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,095 DEBUG Processing 567/1030 atomic regions from SNP 169931 to 170531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,168 DEBUG Processing 675/909 atomic regions from SNP 202434 to 203034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,169 DEBUG Processing 148/238 atomic regions from SNP 44155 to 44755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:27,185 DEBUG Processing 692/864 atomic regions from SNP 207468 to 208068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,229 DEBUG Processing 456/653 atomic regions from SNP 136544 to 137144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,323 DEBUG Processing 540/1139 atomic regions from SNP 161852 to 162452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,338 DEBUG Processing 568/1030 atomic regions from SNP 170231 to 170831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,379 DEBUG Processing 149/238 atomic regions from SNP 44455 to 45055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:27,395 DEBUG Processing 676/909 atomic regions from SNP 202734 to 203334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,429 DEBUG Processing 693/864 atomic regions from SNP 207768 to 208368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,466 DEBUG Processing 457/653 atomic regions from SNP 136844 to 137444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,570 DEBUG Processing 541/1139 atomic regions from SNP 162152 to 162752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,583 DEBUG Processing 569/1030 atomic regions from SNP 170531 to 171131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,589 DEBUG Processing 150/238 atomic regions from SNP 44755 to 45355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:27,623 DEBUG Processing 677/909 atomic regions from SNP 203034 to 203634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,669 DEBUG Processing 694/864 atomic regions from SNP 208068 to 208668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,710 DEBUG Processing 458/653 atomic regions from SNP 137144 to 137744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,799 DEBUG Processing 151/238 atomic regions from SNP 45055 to 45655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:27,820 DEBUG Processing 542/1139 atomic regions from SNP 162452 to 163052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,827 DEBUG Processing 570/1030 atomic regions from SNP 170831 to 171431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,850 DEBUG Processing 678/909 atomic regions from SNP 203334 to 203934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,907 DEBUG Processing 695/864 atomic regions from SNP 208368 to 208968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,953 DEBUG Processing 459/653 atomic regions from SNP 137444 to 138044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,008 DEBUG Processing 152/238 atomic regions from SNP 45355 to 45955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:28,074 DEBUG Processing 543/1139 atomic regions from SNP 162752 to 163352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,074 DEBUG Processing 571/1030 atomic regions from SNP 171131 to 171731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,081 DEBUG Processing 679/909 atomic regions from SNP 203634 to 204234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,156 DEBUG Processing 696/864 atomic regions from SNP 208668 to 209268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,194 DEBUG Processing 460/653 atomic regions from SNP 137744 to 138344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,215 DEBUG Processing 153/238 atomic regions from SNP 45655 to 46255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:28,309 DEBUG Processing 680/909 atomic regions from SNP 203934 to 204534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,319 DEBUG Processing 572/1030 atomic regions from SNP 171431 to 172031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,327 DEBUG Processing 544/1139 atomic regions from SNP 163052 to 163652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,407 DEBUG Processing 697/864 atomic regions from SNP 208968 to 209568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,421 DEBUG Processing 154/238 atomic regions from SNP 45955 to 46555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:28,422 DEBUG Processing 461/653 atomic regions from SNP 138044 to 138644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,563 DEBUG Processing 573/1030 atomic regions from SNP 171731 to 172331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,568 DEBUG Processing 681/909 atomic regions from SNP 204234 to 204834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,577 DEBUG Processing 545/1139 atomic regions from SNP 163352 to 163952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,629 DEBUG Processing 155/238 atomic regions from SNP 46255 to 46855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:28,653 DEBUG Processing 698/864 atomic regions from SNP 209268 to 209868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,663 DEBUG Processing 462/653 atomic regions from SNP 138344 to 138944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,809 DEBUG Processing 574/1030 atomic regions from SNP 172031 to 172631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,822 DEBUG Processing 682/909 atomic regions from SNP 204534 to 205134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,830 DEBUG Processing 546/1139 atomic regions from SNP 163652 to 164252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,836 DEBUG Processing 156/238 atomic regions from SNP 46555 to 47155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:28,901 DEBUG Processing 699/864 atomic regions from SNP 209568 to 210168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,902 DEBUG Processing 463/653 atomic regions from SNP 138644 to 139244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,048 DEBUG Processing 157/238 atomic regions from SNP 46855 to 47455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:29,058 DEBUG Processing 575/1030 atomic regions from SNP 172331 to 172931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,068 DEBUG Processing 683/909 atomic regions from SNP 204834 to 205434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,087 DEBUG Processing 547/1139 atomic regions from SNP 163952 to 164552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,138 DEBUG Processing 464/653 atomic regions from SNP 138944 to 139544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,149 DEBUG Processing 700/864 atomic regions from SNP 209868 to 210468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,259 DEBUG Processing 158/238 atomic regions from SNP 47155 to 47755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:29,306 DEBUG Processing 576/1030 atomic regions from SNP 172631 to 173231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,308 DEBUG Processing 684/909 atomic regions from SNP 205134 to 205734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,340 DEBUG Processing 548/1139 atomic regions from SNP 164252 to 164852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,352 DEBUG Processing 465/653 atomic regions from SNP 139244 to 139844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,389 DEBUG Processing 701/864 atomic regions from SNP 210168 to 210768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,467 DEBUG Processing 159/238 atomic regions from SNP 47455 to 48055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:29,551 DEBUG Processing 685/909 atomic regions from SNP 205434 to 206034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,552 DEBUG Processing 577/1030 atomic regions from SNP 172931 to 173531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,568 DEBUG Processing 466/653 atomic regions from SNP 139544 to 140144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,590 DEBUG Processing 549/1139 atomic regions from SNP 164552 to 165152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,625 DEBUG Processing 702/864 atomic regions from SNP 210468 to 211068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,672 DEBUG Processing 160/238 atomic regions from SNP 47755 to 48355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:29,783 DEBUG Processing 686/909 atomic regions from SNP 205734 to 206334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,786 DEBUG Processing 467/653 atomic regions from SNP 139844 to 140444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,796 DEBUG Processing 578/1030 atomic regions from SNP 173231 to 173831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,839 DEBUG Processing 550/1139 atomic regions from SNP 164852 to 165452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,865 DEBUG Processing 703/864 atomic regions from SNP 210768 to 211368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,876 DEBUG Processing 161/238 atomic regions from SNP 48055 to 48655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:30,027 DEBUG Processing 468/653 atomic regions from SNP 140144 to 140744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,031 DEBUG Processing 687/909 atomic regions from SNP 206034 to 206634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,037 DEBUG Processing 579/1030 atomic regions from SNP 173531 to 174131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,084 DEBUG Processing 162/238 atomic regions from SNP 48355 to 48955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:30,091 DEBUG Processing 551/1139 atomic regions from SNP 165152 to 165752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,118 DEBUG Processing 704/864 atomic regions from SNP 211068 to 211668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,281 DEBUG Processing 580/1030 atomic regions from SNP 173831 to 174431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,284 DEBUG Processing 469/653 atomic regions from SNP 140444 to 141044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,290 DEBUG Processing 688/909 atomic regions from SNP 206334 to 206934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,294 DEBUG Processing 163/238 atomic regions from SNP 48655 to 49255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:30,344 DEBUG Processing 552/1139 atomic regions from SNP 165452 to 166052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,367 DEBUG Processing 705/864 atomic regions from SNP 211368 to 211968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,505 DEBUG Processing 164/238 atomic regions from SNP 48955 to 49555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:30,525 DEBUG Processing 581/1030 atomic regions from SNP 174131 to 174731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,534 DEBUG Processing 470/653 atomic regions from SNP 140744 to 141344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,541 DEBUG Processing 689/909 atomic regions from SNP 206634 to 207234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,595 DEBUG Processing 553/1139 atomic regions from SNP 165752 to 166352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,610 DEBUG Processing 706/864 atomic regions from SNP 211668 to 212268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,713 DEBUG Processing 165/238 atomic regions from SNP 49255 to 49855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:30,768 DEBUG Processing 582/1030 atomic regions from SNP 174431 to 175031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,776 DEBUG Processing 690/909 atomic regions from SNP 206934 to 207534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,788 DEBUG Processing 471/653 atomic regions from SNP 141044 to 141644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,832 DEBUG Processing 707/864 atomic regions from SNP 211968 to 212568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,846 DEBUG Processing 554/1139 atomic regions from SNP 166052 to 166652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,928 DEBUG Processing 166/238 atomic regions from SNP 49555 to 50155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:31,006 DEBUG Processing 691/909 atomic regions from SNP 207234 to 207834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,011 DEBUG Processing 583/1030 atomic regions from SNP 174731 to 175331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,028 DEBUG Processing 472/653 atomic regions from SNP 141344 to 141944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,054 DEBUG Processing 708/864 atomic regions from SNP 212268 to 212868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,098 DEBUG Processing 555/1139 atomic regions from SNP 166352 to 166952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,133 DEBUG Processing 167/238 atomic regions from SNP 49855 to 50455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:31,252 DEBUG Processing 692/909 atomic regions from SNP 207534 to 208134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,254 DEBUG Processing 584/1030 atomic regions from SNP 175031 to 175631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,266 DEBUG Processing 473/653 atomic regions from SNP 141644 to 142244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,275 DEBUG Processing 709/864 atomic regions from SNP 212568 to 213168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,339 DEBUG Processing 168/238 atomic regions from SNP 50155 to 50755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:31,350 DEBUG Processing 556/1139 atomic regions from SNP 166652 to 167252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,497 DEBUG Processing 693/909 atomic regions from SNP 207834 to 208434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,498 DEBUG Processing 710/864 atomic regions from SNP 212868 to 213468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,498 DEBUG Processing 585/1030 atomic regions from SNP 175331 to 175931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,506 DEBUG Processing 474/653 atomic regions from SNP 141944 to 142544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,548 DEBUG Processing 169/238 atomic regions from SNP 50455 to 51055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:31,606 DEBUG Processing 557/1139 atomic regions from SNP 166952 to 167552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,724 DEBUG Processing 711/864 atomic regions from SNP 213168 to 213768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,735 DEBUG Processing 475/653 atomic regions from SNP 142244 to 142844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,745 DEBUG Processing 586/1030 atomic regions from SNP 175631 to 176231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,748 DEBUG Processing 694/909 atomic regions from SNP 208134 to 208734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,759 DEBUG Processing 170/238 atomic regions from SNP 50755 to 51355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:31,858 DEBUG Processing 558/1139 atomic regions from SNP 167252 to 167852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,942 DEBUG Processing 712/864 atomic regions from SNP 213468 to 214068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,969 DEBUG Processing 171/238 atomic regions from SNP 51055 to 51655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:31,971 DEBUG Processing 476/653 atomic regions from SNP 142544 to 143144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,992 DEBUG Processing 587/1030 atomic regions from SNP 175931 to 176531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,998 DEBUG Processing 695/909 atomic regions from SNP 208434 to 209034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,104 DEBUG Processing 559/1139 atomic regions from SNP 167552 to 168152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,159 DEBUG Processing 713/864 atomic regions from SNP 213768 to 214368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,176 DEBUG Processing 172/238 atomic regions from SNP 51355 to 51955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:32,218 DEBUG Processing 477/653 atomic regions from SNP 142844 to 143444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,235 DEBUG Processing 588/1030 atomic regions from SNP 176231 to 176831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,239 DEBUG Processing 696/909 atomic regions from SNP 208734 to 209334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,351 DEBUG Processing 560/1139 atomic regions from SNP 167852 to 168452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,378 DEBUG Processing 714/864 atomic regions from SNP 214068 to 214668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,383 DEBUG Processing 173/238 atomic regions from SNP 51655 to 52255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:32,462 DEBUG Processing 697/909 atomic regions from SNP 209034 to 209634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,472 DEBUG Processing 478/653 atomic regions from SNP 143144 to 143744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,476 DEBUG Processing 589/1030 atomic regions from SNP 176531 to 177131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,588 DEBUG Processing 174/238 atomic regions from SNP 51955 to 52555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:32,597 DEBUG Processing 715/864 atomic regions from SNP 214368 to 214968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,600 DEBUG Processing 561/1139 atomic regions from SNP 168152 to 168752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,686 DEBUG Processing 698/909 atomic regions from SNP 209334 to 209934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,716 DEBUG Processing 590/1030 atomic regions from SNP 176831 to 177431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,718 DEBUG Processing 479/653 atomic regions from SNP 143444 to 144044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,794 DEBUG Processing 175/238 atomic regions from SNP 52255 to 52855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:32,815 DEBUG Processing 716/864 atomic regions from SNP 214668 to 215268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,850 DEBUG Processing 562/1139 atomic regions from SNP 168452 to 169052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,906 DEBUG Processing 699/909 atomic regions from SNP 209634 to 210234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,944 DEBUG Processing 480/653 atomic regions from SNP 143744 to 144344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,957 DEBUG Processing 591/1030 atomic regions from SNP 177131 to 177731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,007 DEBUG Processing 176/238 atomic regions from SNP 52555 to 53155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:33,033 DEBUG Processing 717/864 atomic regions from SNP 214968 to 215568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,098 DEBUG Processing 563/1139 atomic regions from SNP 168752 to 169352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,132 DEBUG Processing 700/909 atomic regions from SNP 209934 to 210534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,176 DEBUG Processing 481/653 atomic regions from SNP 144044 to 144644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,198 DEBUG Processing 592/1030 atomic regions from SNP 177431 to 178031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,244 DEBUG Processing 177/238 atomic regions from SNP 52855 to 53455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:33,251 DEBUG Processing 718/864 atomic regions from SNP 215268 to 215868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,352 DEBUG Processing 564/1139 atomic regions from SNP 169052 to 169652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,353 DEBUG Processing 701/909 atomic regions from SNP 210234 to 210834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,410 DEBUG Processing 482/653 atomic regions from SNP 144344 to 144944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,439 DEBUG Processing 593/1030 atomic regions from SNP 177731 to 178331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,470 DEBUG Processing 719/864 atomic regions from SNP 215568 to 216168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,475 DEBUG Processing 178/238 atomic regions from SNP 53155 to 53755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:33,574 DEBUG Processing 702/909 atomic regions from SNP 210534 to 211134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,600 DEBUG Processing 565/1139 atomic regions from SNP 169352 to 169952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,647 DEBUG Processing 483/653 atomic regions from SNP 144644 to 145244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,683 DEBUG Processing 594/1030 atomic regions from SNP 178031 to 178631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,689 DEBUG Processing 179/238 atomic regions from SNP 53455 to 54055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:33,692 DEBUG Processing 720/864 atomic regions from SNP 215868 to 216468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,793 DEBUG Processing 703/909 atomic regions from SNP 210834 to 211434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,846 DEBUG Processing 566/1139 atomic regions from SNP 169652 to 170252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,880 DEBUG Processing 484/653 atomic regions from SNP 144944 to 145544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,897 DEBUG Processing 180/238 atomic regions from SNP 53755 to 54355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:33,910 DEBUG Processing 721/864 atomic regions from SNP 216168 to 216768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,937 DEBUG Processing 595/1030 atomic regions from SNP 178331 to 178931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,010 DEBUG Processing 704/909 atomic regions from SNP 211134 to 211734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,093 DEBUG Processing 567/1139 atomic regions from SNP 169952 to 170552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,102 DEBUG Processing 485/653 atomic regions from SNP 145244 to 145844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,105 DEBUG Processing 181/238 atomic regions from SNP 54055 to 54655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:34,127 DEBUG Processing 722/864 atomic regions from SNP 216468 to 217068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,205 DEBUG Processing 596/1030 atomic regions from SNP 178631 to 179231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,230 DEBUG Processing 705/909 atomic regions from SNP 211434 to 212034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,314 DEBUG Processing 182/238 atomic regions from SNP 54355 to 54955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:34,323 DEBUG Processing 486/653 atomic regions from SNP 145544 to 146144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,341 DEBUG Processing 723/864 atomic regions from SNP 216768 to 217368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,343 DEBUG Processing 568/1139 atomic regions from SNP 170252 to 170852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,454 DEBUG Processing 706/909 atomic regions from SNP 211734 to 212334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,474 DEBUG Processing 597/1030 atomic regions from SNP 178931 to 179531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,520 DEBUG Processing 183/238 atomic regions from SNP 54655 to 55255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:34,539 DEBUG Processing 487/653 atomic regions from SNP 145844 to 146444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,559 DEBUG Processing 724/864 atomic regions from SNP 217068 to 217668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,590 DEBUG Processing 569/1139 atomic regions from SNP 170552 to 171152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,676 DEBUG Processing 707/909 atomic regions from SNP 212034 to 212634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,728 DEBUG Processing 184/238 atomic regions from SNP 54955 to 55555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:34,744 DEBUG Processing 598/1030 atomic regions from SNP 179231 to 179831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,757 DEBUG Processing 488/653 atomic regions from SNP 146144 to 146744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,775 DEBUG Processing 725/864 atomic regions from SNP 217368 to 217968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,836 DEBUG Processing 570/1139 atomic regions from SNP 170852 to 171452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,897 DEBUG Processing 708/909 atomic regions from SNP 212334 to 212934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,935 DEBUG Processing 185/238 atomic regions from SNP 55255 to 55855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:34,976 DEBUG Processing 489/653 atomic regions from SNP 146444 to 147044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,994 DEBUG Processing 726/864 atomic regions from SNP 217668 to 218268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,012 DEBUG Processing 599/1030 atomic regions from SNP 179531 to 180131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,083 DEBUG Processing 571/1139 atomic regions from SNP 171152 to 171752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,119 DEBUG Processing 709/909 atomic regions from SNP 212634 to 213234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,148 DEBUG Processing 186/238 atomic regions from SNP 55555 to 56155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:35,193 DEBUG Processing 490/653 atomic regions from SNP 146744 to 147344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,235 DEBUG Processing 727/864 atomic regions from SNP 217968 to 218568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,274 DEBUG Processing 600/1030 atomic regions from SNP 179831 to 180431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,330 DEBUG Processing 572/1139 atomic regions from SNP 171452 to 172052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,341 DEBUG Processing 710/909 atomic regions from SNP 212934 to 213534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,378 DEBUG Processing 187/238 atomic regions from SNP 55855 to 56455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:35,412 DEBUG Processing 491/653 atomic regions from SNP 147044 to 147644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,459 DEBUG Processing 728/864 atomic regions from SNP 218268 to 218868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,520 DEBUG Processing 601/1030 atomic regions from SNP 180131 to 180731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,567 DEBUG Processing 711/909 atomic regions from SNP 213234 to 213834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,586 DEBUG Processing 188/238 atomic regions from SNP 56155 to 56755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:35,588 DEBUG Processing 573/1139 atomic regions from SNP 171752 to 172352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,631 DEBUG Processing 492/653 atomic regions from SNP 147344 to 147944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,680 DEBUG Processing 729/864 atomic regions from SNP 218568 to 219168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,768 DEBUG Processing 602/1030 atomic regions from SNP 180431 to 181031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,796 DEBUG Processing 712/909 atomic regions from SNP 213534 to 214134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,796 DEBUG Processing 189/238 atomic regions from SNP 56455 to 57055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:35,846 DEBUG Processing 574/1139 atomic regions from SNP 172052 to 172652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,864 DEBUG Processing 493/653 atomic regions from SNP 147644 to 148244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,905 DEBUG Processing 730/864 atomic regions from SNP 218868 to 219468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,010 DEBUG Processing 190/238 atomic regions from SNP 56755 to 57355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:36,015 DEBUG Processing 603/1030 atomic regions from SNP 180731 to 181331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,023 DEBUG Processing 713/909 atomic regions from SNP 213834 to 214434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,098 DEBUG Processing 575/1139 atomic regions from SNP 172352 to 172952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,108 DEBUG Processing 494/653 atomic regions from SNP 147944 to 148544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,146 DEBUG Processing 731/864 atomic regions from SNP 219168 to 219768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,220 DEBUG Processing 191/238 atomic regions from SNP 57055 to 57655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:36,252 DEBUG Processing 714/909 atomic regions from SNP 214134 to 214734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,259 DEBUG Processing 604/1030 atomic regions from SNP 181031 to 181631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,346 DEBUG Processing 576/1139 atomic regions from SNP 172652 to 173252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,355 DEBUG Processing 495/653 atomic regions from SNP 148244 to 148844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,397 DEBUG Processing 732/864 atomic regions from SNP 219468 to 220068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,445 DEBUG Processing 192/238 atomic regions from SNP 57355 to 57955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:36,493 DEBUG Processing 715/909 atomic regions from SNP 214434 to 215034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,502 DEBUG Processing 605/1030 atomic regions from SNP 181331 to 181931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,594 DEBUG Processing 577/1139 atomic regions from SNP 172952 to 173552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,607 DEBUG Processing 496/653 atomic regions from SNP 148544 to 149144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,646 DEBUG Processing 733/864 atomic regions from SNP 219768 to 220368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,667 DEBUG Processing 193/238 atomic regions from SNP 57655 to 58255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:36,719 DEBUG Processing 716/909 atomic regions from SNP 214734 to 215334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,743 DEBUG Processing 606/1030 atomic regions from SNP 181631 to 182231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,838 DEBUG Processing 578/1139 atomic regions from SNP 173252 to 173852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,859 DEBUG Processing 497/653 atomic regions from SNP 148844 to 149444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,896 DEBUG Processing 194/238 atomic regions from SNP 57955 to 58555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:36,896 DEBUG Processing 734/864 atomic regions from SNP 220068 to 220668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,948 DEBUG Processing 717/909 atomic regions from SNP 215034 to 215634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,982 DEBUG Processing 607/1030 atomic regions from SNP 181931 to 182531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,082 DEBUG Processing 579/1139 atomic regions from SNP 173552 to 174152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,108 DEBUG Processing 498/653 atomic regions from SNP 149144 to 149744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,129 DEBUG Processing 195/238 atomic regions from SNP 58255 to 58855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:37,135 DEBUG Processing 735/864 atomic regions from SNP 220368 to 220968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,197 DEBUG Processing 718/909 atomic regions from SNP 215334 to 215934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,222 DEBUG Processing 608/1030 atomic regions from SNP 182231 to 182831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,326 DEBUG Processing 580/1139 atomic regions from SNP 173852 to 174452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,349 DEBUG Processing 736/864 atomic regions from SNP 220668 to 221268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,358 DEBUG Processing 196/238 atomic regions from SNP 58555 to 59155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:37,361 DEBUG Processing 499/653 atomic regions from SNP 149444 to 150044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,451 DEBUG Processing 719/909 atomic regions from SNP 215634 to 216234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,464 DEBUG Processing 609/1030 atomic regions from SNP 182531 to 183131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,564 DEBUG Processing 737/864 atomic regions from SNP 220968 to 221568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,572 DEBUG Processing 581/1139 atomic regions from SNP 174152 to 174752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,596 DEBUG Processing 197/238 atomic regions from SNP 58855 to 59455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:37,614 DEBUG Processing 500/653 atomic regions from SNP 149744 to 150344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,705 DEBUG Processing 610/1030 atomic regions from SNP 182831 to 183431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,711 DEBUG Processing 720/909 atomic regions from SNP 215934 to 216534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,778 DEBUG Processing 738/864 atomic regions from SNP 221268 to 221868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,819 DEBUG Processing 582/1139 atomic regions from SNP 174452 to 175052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,827 DEBUG Processing 198/238 atomic regions from SNP 59155 to 59755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:37,856 DEBUG Processing 501/653 atomic regions from SNP 150044 to 150644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,945 DEBUG Processing 611/1030 atomic regions from SNP 183131 to 183731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,968 DEBUG Processing 721/909 atomic regions from SNP 216234 to 216834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,997 DEBUG Processing 739/864 atomic regions from SNP 221568 to 222168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,050 DEBUG Processing 199/238 atomic regions from SNP 59455 to 60055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:38,075 DEBUG Processing 583/1139 atomic regions from SNP 174752 to 175352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,102 DEBUG Processing 502/653 atomic regions from SNP 150344 to 150944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,186 DEBUG Processing 612/1030 atomic regions from SNP 183431 to 184031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,215 DEBUG Processing 740/864 atomic regions from SNP 221868 to 222468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,223 DEBUG Processing 722/909 atomic regions from SNP 216534 to 217134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,258 DEBUG Processing 200/238 atomic regions from SNP 59755 to 60355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:38,324 DEBUG Processing 584/1139 atomic regions from SNP 175052 to 175652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,349 DEBUG Processing 503/653 atomic regions from SNP 150644 to 151244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,426 DEBUG Processing 613/1030 atomic regions from SNP 183731 to 184331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,430 DEBUG Processing 741/864 atomic regions from SNP 222168 to 222768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,457 DEBUG Processing 723/909 atomic regions from SNP 216834 to 217434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,465 DEBUG Processing 201/238 atomic regions from SNP 60055 to 60655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:38,570 DEBUG Processing 585/1139 atomic regions from SNP 175352 to 175952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,588 DEBUG Processing 504/653 atomic regions from SNP 150944 to 151544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,646 DEBUG Processing 742/864 atomic regions from SNP 222468 to 223068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,667 DEBUG Processing 614/1030 atomic regions from SNP 184031 to 184631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,673 DEBUG Processing 202/238 atomic regions from SNP 60355 to 60955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:38,684 DEBUG Processing 724/909 atomic regions from SNP 217134 to 217734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,817 DEBUG Processing 586/1139 atomic regions from SNP 175652 to 176252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,827 DEBUG Processing 505/653 atomic regions from SNP 151244 to 151844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,865 DEBUG Processing 743/864 atomic regions from SNP 222768 to 223368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,893 DEBUG Processing 203/238 atomic regions from SNP 60655 to 61255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:38,910 DEBUG Processing 725/909 atomic regions from SNP 217434 to 218034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,912 DEBUG Processing 615/1030 atomic regions from SNP 184331 to 184931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,066 DEBUG Processing 587/1139 atomic regions from SNP 175952 to 176552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,070 DEBUG Processing 506/653 atomic regions from SNP 151544 to 152144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,085 DEBUG Processing 744/864 atomic regions from SNP 223068 to 223668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,124 DEBUG Processing 204/238 atomic regions from SNP 60955 to 61555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:39,137 DEBUG Processing 726/909 atomic regions from SNP 217734 to 218334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,155 DEBUG Processing 616/1030 atomic regions from SNP 184631 to 185231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,304 DEBUG Processing 745/864 atomic regions from SNP 223368 to 223968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,313 DEBUG Processing 507/653 atomic regions from SNP 151844 to 152444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,318 DEBUG Processing 588/1139 atomic regions from SNP 176252 to 176852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,363 DEBUG Processing 727/909 atomic regions from SNP 218034 to 218634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,364 DEBUG Processing 205/238 atomic regions from SNP 61255 to 61855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:39,397 DEBUG Processing 617/1030 atomic regions from SNP 184931 to 185531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,523 DEBUG Processing 746/864 atomic regions from SNP 223668 to 224268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,540 DEBUG Processing 508/653 atomic regions from SNP 152144 to 152744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,570 DEBUG Processing 589/1139 atomic regions from SNP 176552 to 177152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,589 DEBUG Processing 728/909 atomic regions from SNP 218334 to 218934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,592 DEBUG Processing 206/238 atomic regions from SNP 61555 to 62155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:39,637 DEBUG Processing 618/1030 atomic regions from SNP 185231 to 185831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,739 DEBUG Processing 747/864 atomic regions from SNP 223968 to 224568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,765 DEBUG Processing 509/653 atomic regions from SNP 152444 to 153044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,815 DEBUG Processing 729/909 atomic regions from SNP 218634 to 219234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,822 DEBUG Processing 590/1139 atomic regions from SNP 176852 to 177452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,830 DEBUG Processing 207/238 atomic regions from SNP 61855 to 62455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:39,878 DEBUG Processing 619/1030 atomic regions from SNP 185531 to 186131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,957 DEBUG Processing 748/864 atomic regions from SNP 224268 to 224868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,998 DEBUG Processing 510/653 atomic regions from SNP 152744 to 153344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,047 DEBUG Processing 730/909 atomic regions from SNP 218934 to 219534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,048 DEBUG Processing 208/238 atomic regions from SNP 62155 to 62755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:40,074 DEBUG Processing 591/1139 atomic regions from SNP 177152 to 177752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,119 DEBUG Processing 620/1030 atomic regions from SNP 185831 to 186431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,170 DEBUG Processing 749/864 atomic regions from SNP 224568 to 225168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,228 DEBUG Processing 511/653 atomic regions from SNP 153044 to 153644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,255 DEBUG Processing 209/238 atomic regions from SNP 62455 to 63055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:40,290 DEBUG Processing 731/909 atomic regions from SNP 219234 to 219834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,325 DEBUG Processing 592/1139 atomic regions from SNP 177452 to 178052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,359 DEBUG Processing 621/1030 atomic regions from SNP 186131 to 186731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,382 DEBUG Processing 750/864 atomic regions from SNP 224868 to 225468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,460 DEBUG Processing 210/238 atomic regions from SNP 62755 to 63355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:40,473 DEBUG Processing 512/653 atomic regions from SNP 153344 to 153944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,546 DEBUG Processing 732/909 atomic regions from SNP 219534 to 220134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,576 DEBUG Processing 593/1139 atomic regions from SNP 177752 to 178352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,595 DEBUG Processing 751/864 atomic regions from SNP 225168 to 225768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,600 DEBUG Processing 622/1030 atomic regions from SNP 186431 to 187031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,662 DEBUG Processing 211/238 atomic regions from SNP 63055 to 63655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:40,722 DEBUG Processing 513/653 atomic regions from SNP 153644 to 154244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,802 DEBUG Processing 733/909 atomic regions from SNP 219834 to 220434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,813 DEBUG Processing 752/864 atomic regions from SNP 225468 to 226068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,827 DEBUG Processing 594/1139 atomic regions from SNP 178052 to 178652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,843 DEBUG Processing 623/1030 atomic regions from SNP 186731 to 187331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,866 DEBUG Processing 212/238 atomic regions from SNP 63355 to 63955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:40,967 DEBUG Processing 514/653 atomic regions from SNP 153944 to 154544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,033 DEBUG Processing 753/864 atomic regions from SNP 225768 to 226368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,064 DEBUG Processing 734/909 atomic regions from SNP 220134 to 220734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,073 DEBUG Processing 213/238 atomic regions from SNP 63655 to 64255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:41,078 DEBUG Processing 595/1139 atomic regions from SNP 178352 to 178952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,089 DEBUG Processing 624/1030 atomic regions from SNP 187031 to 187631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,217 DEBUG Processing 515/653 atomic regions from SNP 154244 to 154844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,253 DEBUG Processing 754/864 atomic regions from SNP 226068 to 226668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,284 DEBUG Processing 214/238 atomic regions from SNP 63955 to 64555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:41,318 DEBUG Processing 735/909 atomic regions from SNP 220434 to 221034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,333 DEBUG Processing 596/1139 atomic regions from SNP 178652 to 179252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,334 DEBUG Processing 625/1030 atomic regions from SNP 187331 to 187931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,471 DEBUG Processing 516/653 atomic regions from SNP 154544 to 155144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,472 DEBUG Processing 755/864 atomic regions from SNP 226368 to 226968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,496 DEBUG Processing 215/238 atomic regions from SNP 64255 to 64855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:41,557 DEBUG Processing 736/909 atomic regions from SNP 220734 to 221334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,578 DEBUG Processing 626/1030 atomic regions from SNP 187631 to 188231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,586 DEBUG Processing 597/1139 atomic regions from SNP 178952 to 179552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,688 DEBUG Processing 756/864 atomic regions from SNP 226668 to 227268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,706 DEBUG Processing 216/238 atomic regions from SNP 64555 to 65155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:41,726 DEBUG Processing 517/653 atomic regions from SNP 154844 to 155444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,783 DEBUG Processing 737/909 atomic regions from SNP 221034 to 221634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,821 DEBUG Processing 627/1030 atomic regions from SNP 187931 to 188531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,836 DEBUG Processing 598/1139 atomic regions from SNP 179252 to 179852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,902 DEBUG Processing 757/864 atomic regions from SNP 226968 to 227568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,940 DEBUG Processing 217/238 atomic regions from SNP 64855 to 65455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:41,977 DEBUG Processing 518/653 atomic regions from SNP 155144 to 155744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,009 DEBUG Processing 738/909 atomic regions from SNP 221334 to 221934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,063 DEBUG Processing 628/1030 atomic regions from SNP 188231 to 188831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,086 DEBUG Processing 599/1139 atomic regions from SNP 179552 to 180152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,119 DEBUG Processing 758/864 atomic regions from SNP 227268 to 227868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,173 DEBUG Processing 218/238 atomic regions from SNP 65155 to 65755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:42,227 DEBUG Processing 519/653 atomic regions from SNP 155444 to 156044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,259 DEBUG Processing 739/909 atomic regions from SNP 221634 to 222234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,307 DEBUG Processing 629/1030 atomic regions from SNP 188531 to 189131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,339 DEBUG Processing 600/1139 atomic regions from SNP 179852 to 180452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,367 DEBUG Processing 759/864 atomic regions from SNP 227568 to 228168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,398 DEBUG Processing 219/238 atomic regions from SNP 65455 to 66055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:42,478 DEBUG Processing 520/653 atomic regions from SNP 155744 to 156344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,513 DEBUG Processing 740/909 atomic regions from SNP 221934 to 222534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,551 DEBUG Processing 630/1030 atomic regions from SNP 188831 to 189431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,593 DEBUG Processing 601/1139 atomic regions from SNP 180152 to 180752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,614 DEBUG Processing 760/864 atomic regions from SNP 227868 to 228468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,625 DEBUG Processing 220/238 atomic regions from SNP 65755 to 66355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:42,736 DEBUG Processing 741/909 atomic regions from SNP 222234 to 222834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,743 DEBUG Processing 521/653 atomic regions from SNP 156044 to 156644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,800 DEBUG Processing 631/1030 atomic regions from SNP 189131 to 189731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,843 DEBUG Processing 221/238 atomic regions from SNP 66055 to 66655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:42,849 DEBUG Processing 602/1139 atomic regions from SNP 180452 to 181052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,858 DEBUG Processing 761/864 atomic regions from SNP 228168 to 228768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,954 DEBUG Processing 742/909 atomic regions from SNP 222534 to 223134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,998 DEBUG Processing 522/653 atomic regions from SNP 156344 to 156944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,044 DEBUG Processing 632/1030 atomic regions from SNP 189431 to 190031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,052 DEBUG Processing 222/238 atomic regions from SNP 66355 to 66955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:43,104 DEBUG Processing 762/864 atomic regions from SNP 228468 to 229068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,112 DEBUG Processing 603/1139 atomic regions from SNP 180752 to 181352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,176 DEBUG Processing 743/909 atomic regions from SNP 222834 to 223434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,252 DEBUG Processing 523/653 atomic regions from SNP 156644 to 157244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,274 DEBUG Processing 223/238 atomic regions from SNP 66655 to 67255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:43,285 DEBUG Processing 633/1030 atomic regions from SNP 189731 to 190331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,345 DEBUG Processing 763/864 atomic regions from SNP 228768 to 229368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,383 DEBUG Processing 604/1139 atomic regions from SNP 181052 to 181652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,420 DEBUG Processing 744/909 atomic regions from SNP 223134 to 223734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,485 DEBUG Processing 224/238 atomic regions from SNP 66955 to 67555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:43,509 DEBUG Processing 524/653 atomic regions from SNP 156944 to 157544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,529 DEBUG Processing 634/1030 atomic regions from SNP 190031 to 190631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,597 DEBUG Processing 764/864 atomic regions from SNP 229068 to 229668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,657 DEBUG Processing 605/1139 atomic regions from SNP 181352 to 181952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,658 DEBUG Processing 745/909 atomic regions from SNP 223434 to 224034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,693 DEBUG Processing 225/238 atomic regions from SNP 67255 to 67855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:43,766 DEBUG Processing 525/653 atomic regions from SNP 157244 to 157844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,773 DEBUG Processing 635/1030 atomic regions from SNP 190331 to 190931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,852 DEBUG Processing 765/864 atomic regions from SNP 229368 to 229968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,888 DEBUG Processing 746/909 atomic regions from SNP 223734 to 224334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,899 DEBUG Processing 226/238 atomic regions from SNP 67555 to 68155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:43,938 DEBUG Processing 606/1139 atomic regions from SNP 181652 to 182252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,015 DEBUG Processing 636/1030 atomic regions from SNP 190631 to 191231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,022 DEBUG Processing 526/653 atomic regions from SNP 157544 to 158144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,101 DEBUG Processing 766/864 atomic regions from SNP 229668 to 230268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,110 DEBUG Processing 227/238 atomic regions from SNP 67855 to 68455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:44,115 DEBUG Processing 747/909 atomic regions from SNP 224034 to 224634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,193 DEBUG Processing 607/1139 atomic regions from SNP 181952 to 182552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,259 DEBUG Processing 637/1030 atomic regions from SNP 190931 to 191531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,276 DEBUG Processing 527/653 atomic regions from SNP 157844 to 158444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,320 DEBUG Processing 228/238 atomic regions from SNP 68155 to 68755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:44,341 DEBUG Processing 767/864 atomic regions from SNP 229968 to 230568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,344 DEBUG Processing 748/909 atomic regions from SNP 224334 to 224934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,444 DEBUG Processing 608/1139 atomic regions from SNP 182252 to 182852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,503 DEBUG Processing 638/1030 atomic regions from SNP 191231 to 191831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,528 DEBUG Processing 229/238 atomic regions from SNP 68455 to 69055 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:44,533 DEBUG Processing 528/653 atomic regions from SNP 158144 to 158744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,571 DEBUG Processing 749/909 atomic regions from SNP 224634 to 225234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,578 DEBUG Processing 768/864 atomic regions from SNP 230268 to 230868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,712 DEBUG Processing 609/1139 atomic regions from SNP 182552 to 183152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,738 DEBUG Processing 230/238 atomic regions from SNP 68755 to 69355 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:44,747 DEBUG Processing 639/1030 atomic regions from SNP 191531 to 192131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,792 DEBUG Processing 529/653 atomic regions from SNP 158444 to 159044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,796 DEBUG Processing 750/909 atomic regions from SNP 224934 to 225534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,824 DEBUG Processing 769/864 atomic regions from SNP 230568 to 231168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,945 DEBUG Processing 231/238 atomic regions from SNP 69055 to 69655 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:44,978 DEBUG Processing 610/1139 atomic regions from SNP 182852 to 183452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,991 DEBUG Processing 640/1030 atomic regions from SNP 191831 to 192431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,022 DEBUG Processing 751/909 atomic regions from SNP 225234 to 225834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,045 DEBUG Processing 530/653 atomic regions from SNP 158744 to 159344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,071 DEBUG Processing 770/864 atomic regions from SNP 230868 to 231468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,145 DEBUG Processing 232/238 atomic regions from SNP 69355 to 69955 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:45,227 DEBUG Processing 611/1139 atomic regions from SNP 183152 to 183752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,235 DEBUG Processing 641/1030 atomic regions from SNP 192131 to 192731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,247 DEBUG Processing 752/909 atomic regions from SNP 225534 to 226134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,300 DEBUG Processing 531/653 atomic regions from SNP 159044 to 159644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,320 DEBUG Processing 771/864 atomic regions from SNP 231168 to 231768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,347 DEBUG Processing 233/238 atomic regions from SNP 69655 to 70255 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:45,475 DEBUG Processing 753/909 atomic regions from SNP 225834 to 226434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,476 DEBUG Processing 642/1030 atomic regions from SNP 192431 to 193031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,477 DEBUG Processing 612/1139 atomic regions from SNP 183452 to 184052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,551 DEBUG Processing 234/238 atomic regions from SNP 69955 to 70555 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:45,558 DEBUG Processing 532/653 atomic regions from SNP 159344 to 159944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,558 DEBUG Processing 772/864 atomic regions from SNP 231468 to 232068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,704 DEBUG Processing 754/909 atomic regions from SNP 226134 to 226734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,718 DEBUG Processing 643/1030 atomic regions from SNP 192731 to 193331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,728 DEBUG Processing 613/1139 atomic regions from SNP 183752 to 184352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,761 DEBUG Processing 235/238 atomic regions from SNP 70255 to 70855 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:45,773 DEBUG Processing 773/864 atomic regions from SNP 231768 to 232368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,811 DEBUG Processing 533/653 atomic regions from SNP 159644 to 160244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,954 DEBUG Processing 755/909 atomic regions from SNP 226434 to 227034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,965 DEBUG Processing 644/1030 atomic regions from SNP 193031 to 193631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,971 DEBUG Processing 236/238 atomic regions from SNP 70555 to 71155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:45,985 DEBUG Processing 614/1139 atomic regions from SNP 184052 to 184652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,001 DEBUG Processing 774/864 atomic regions from SNP 232068 to 232668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,060 DEBUG Processing 534/653 atomic regions from SNP 159944 to 160544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,182 DEBUG Processing 756/909 atomic regions from SNP 226734 to 227334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,182 DEBUG Processing 237/238 atomic regions from SNP 70855 to 71455 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:46,212 DEBUG Processing 645/1030 atomic regions from SNP 193331 to 193931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,224 DEBUG Processing 775/864 atomic regions from SNP 232368 to 232968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,243 DEBUG Processing 615/1139 atomic regions from SNP 184352 to 184952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,314 DEBUG Processing 535/653 atomic regions from SNP 160244 to 160844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,402 DEBUG Processing 238/238 atomic regions from SNP 71155 to 71755 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:46,410 DEBUG Processing 757/909 atomic regions from SNP 227034 to 227634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,459 DEBUG Processing 646/1030 atomic regions from SNP 193631 to 194231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,464 DEBUG Processing 776/864 atomic regions from SNP 232668 to 233268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,503 DEBUG Processing 616/1139 atomic regions from SNP 184652 to 185252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,512 DEBUG Unique SNPs positions in subchromosome 5: 71756 2025-01-31 09:46:46,567 DEBUG Processing 536/653 atomic regions from SNP 160544 to 161144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,637 DEBUG Processing 758/909 atomic regions from SNP 227334 to 227934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,662 DEBUG Subchromosome time: 59.042377980425954, subchromosome SNPs: 71756 2025-01-31 09:46:46,662 DEBUG Estimated BADs: [2.11, 12.67, 4.22, 1.06, 2.11, 1.06, 0.00, 4.22, 1.06, 4.22, 21.12, 2.11, 6.34, 2.11, 1.06, 2.11, 6.34, 2.11, 4.22, 2.11, 1.06, 0.00, 1.06, 2.11, 4.22, 2.11, 4.22, 2.11, 21.12] SNP counts: [3968, 989, 10276, 3594, 8774, 5570, 63, 5789, 15011, 4387, 154, 35460, 3269, 3710, 24118, 3032, 1760, 6656, 10852, 9599, 20509, 2, 13253, 24434, 2964, 12113, 8888, 10063, 41] SNP IDs counts: [3968, 989, 10276, 3594, 8774, 5570, 63, 5789, 15011, 4387, 154, 35460, 3269, 3710, 24118, 3032, 1760, 6656, 10852, 9599, 20509, 2, 13253, 24434, 2964, 12113, 8888, 10063, 41] Critical gap: 754687bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.55Mbp, 8.07Mbp, 14.04Mbp, 16.21Mbp, 21.40Mbp, 26.92Mbp[1.11Mbp], 30.24Mbp[0.89Mbp], 39.03Mbp, 47.96Mbp, 50.55Mbp, 50.64Mbp, 72.91Mbp, 75.08Mbp, 77.43Mbp, 91.99Mbp, 93.78Mbp, 94.80Mbp, 98.94Mbp, 105.06Mbp, 110.81Mbp, 124.25Mbp[0.88Mbp], 125.12Mbp[0.89Mbp], 133.91Mbp, 150.43Mbp, 152.13Mbp, 159.37Mbp, 164.30Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:46:46,662 DEBUG chrX time: 59.04291754774749 s 2025-01-31 09:46:46,713 DEBUG Processing 777/864 atomic regions from SNP 232968 to 233568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,726 DEBUG Processing 647/1030 atomic regions from SNP 193931 to 194531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,756 DEBUG Processing 617/1139 atomic regions from SNP 184952 to 185552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,813 DEBUG chrX: Fitting background model for 27 segments 2025-01-31 09:46:46,817 DEBUG Processing 537/653 atomic regions from SNP 160844 to 161444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,861 DEBUG Processing 759/909 atomic regions from SNP 227634 to 228234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,959 DEBUG Processing 778/864 atomic regions from SNP 233268 to 233868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,990 DEBUG Processing 648/1030 atomic regions from SNP 194231 to 194831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,007 DEBUG Processing 618/1139 atomic regions from SNP 185252 to 185852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,069 DEBUG Processing 538/653 atomic regions from SNP 161144 to 161744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,082 DEBUG Processing 760/909 atomic regions from SNP 227934 to 228534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,209 DEBUG Processing 779/864 atomic regions from SNP 233568 to 234168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,247 DEBUG Processing 649/1030 atomic regions from SNP 194531 to 195131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,260 DEBUG Processing 619/1139 atomic regions from SNP 185552 to 186152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,306 DEBUG Processing 761/909 atomic regions from SNP 228234 to 228834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,322 DEBUG Processing 539/653 atomic regions from SNP 161444 to 162044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,460 DEBUG Processing 780/864 atomic regions from SNP 233868 to 234468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,491 DEBUG Processing 650/1030 atomic regions from SNP 194831 to 195431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,511 DEBUG Processing 620/1139 atomic regions from SNP 185852 to 186452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,529 DEBUG Processing 762/909 atomic regions from SNP 228534 to 229134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,574 DEBUG Processing 540/653 atomic regions from SNP 161744 to 162344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,712 DEBUG Processing 781/864 atomic regions from SNP 234168 to 234768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,738 DEBUG Processing 651/1030 atomic regions from SNP 195131 to 195731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,757 DEBUG Processing 763/909 atomic regions from SNP 228834 to 229434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,764 DEBUG Processing 621/1139 atomic regions from SNP 186152 to 186752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,830 DEBUG Processing 541/653 atomic regions from SNP 162044 to 162644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,957 DEBUG Processing 782/864 atomic regions from SNP 234468 to 235068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,991 DEBUG Processing 652/1030 atomic regions from SNP 195431 to 196031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,991 DEBUG Processing 764/909 atomic regions from SNP 229134 to 229734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,024 DEBUG Processing 622/1139 atomic regions from SNP 186452 to 187052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,072 DEBUG Processing 542/653 atomic regions from SNP 162344 to 162944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,199 DEBUG Processing 783/864 atomic regions from SNP 234768 to 235368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,223 DEBUG Processing 765/909 atomic regions from SNP 229434 to 230034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,240 DEBUG Processing 653/1030 atomic regions from SNP 195731 to 196331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,280 DEBUG Processing 623/1139 atomic regions from SNP 186752 to 187352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,308 DEBUG Processing 543/653 atomic regions from SNP 162644 to 163244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,452 DEBUG Processing 784/864 atomic regions from SNP 235068 to 235668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,469 DEBUG Processing 766/909 atomic regions from SNP 229734 to 230334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,486 DEBUG Processing 654/1030 atomic regions from SNP 196031 to 196631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,532 DEBUG Processing 624/1139 atomic regions from SNP 187052 to 187652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,549 DEBUG Processing 544/653 atomic regions from SNP 162944 to 163544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,669 DEBUG Processing 785/864 atomic regions from SNP 235368 to 235968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,728 DEBUG Processing 767/909 atomic regions from SNP 230034 to 230634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,731 DEBUG Processing 655/1030 atomic regions from SNP 196331 to 196931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,780 DEBUG Processing 625/1139 atomic regions from SNP 187352 to 187952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,790 DEBUG Processing 545/653 atomic regions from SNP 163244 to 163844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,881 DEBUG Processing 786/864 atomic regions from SNP 235668 to 236268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,972 DEBUG Processing 656/1030 atomic regions from SNP 196631 to 197231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,981 DEBUG Processing 768/909 atomic regions from SNP 230334 to 230934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,028 DEBUG Processing 626/1139 atomic regions from SNP 187652 to 188252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,031 DEBUG Processing 546/653 atomic regions from SNP 163544 to 164144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,092 DEBUG Processing 787/864 atomic regions from SNP 235968 to 236568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,214 DEBUG Processing 657/1030 atomic regions from SNP 196931 to 197531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,229 DEBUG Processing 769/909 atomic regions from SNP 230634 to 231234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,267 DEBUG Processing 547/653 atomic regions from SNP 163844 to 164444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,276 DEBUG Processing 627/1139 atomic regions from SNP 187952 to 188552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,304 DEBUG Processing 788/864 atomic regions from SNP 236268 to 236868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,456 DEBUG Processing 658/1030 atomic regions from SNP 197231 to 197831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,477 DEBUG Processing 770/909 atomic regions from SNP 230934 to 231534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,510 DEBUG Processing 548/653 atomic regions from SNP 164144 to 164744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,526 DEBUG Processing 628/1139 atomic regions from SNP 188252 to 188852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,541 DEBUG Processing 789/864 atomic regions from SNP 236568 to 237168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,699 DEBUG Processing 659/1030 atomic regions from SNP 197531 to 198131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,702 DEBUG Processing 771/909 atomic regions from SNP 231234 to 231834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,762 DEBUG Processing 549/653 atomic regions from SNP 164444 to 165044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,778 DEBUG Processing 629/1139 atomic regions from SNP 188552 to 189152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,793 DEBUG Processing 790/864 atomic regions from SNP 236868 to 237468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,927 DEBUG Processing 772/909 atomic regions from SNP 231534 to 232134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,941 DEBUG Processing 660/1030 atomic regions from SNP 197831 to 198431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,017 DEBUG Processing 550/653 atomic regions from SNP 164744 to 165344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,029 DEBUG Processing 630/1139 atomic regions from SNP 188852 to 189452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,040 DEBUG Processing 791/864 atomic regions from SNP 237168 to 237768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,150 DEBUG Processing 773/909 atomic regions from SNP 231834 to 232434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,183 DEBUG Processing 661/1030 atomic regions from SNP 198131 to 198731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,269 DEBUG Processing 551/653 atomic regions from SNP 165044 to 165644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,280 DEBUG Processing 631/1139 atomic regions from SNP 189152 to 189752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,281 DEBUG Processing 792/864 atomic regions from SNP 237468 to 238068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,388 DEBUG Processing 774/909 atomic regions from SNP 232134 to 232734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,424 DEBUG Processing 662/1030 atomic regions from SNP 198431 to 199031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,516 DEBUG Processing 552/653 atomic regions from SNP 165344 to 165944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,531 DEBUG Processing 793/864 atomic regions from SNP 237768 to 238368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,531 DEBUG Processing 632/1139 atomic regions from SNP 189452 to 190052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,633 DEBUG Processing 775/909 atomic regions from SNP 232434 to 233034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,666 DEBUG Processing 663/1030 atomic regions from SNP 198731 to 199331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,761 DEBUG Processing 553/653 atomic regions from SNP 165644 to 166244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,779 DEBUG Processing 794/864 atomic regions from SNP 238068 to 238668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,785 DEBUG Processing 633/1139 atomic regions from SNP 189752 to 190352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,861 DEBUG Processing 776/909 atomic regions from SNP 232734 to 233334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,907 DEBUG Processing 664/1030 atomic regions from SNP 199031 to 199631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,015 DEBUG Processing 554/653 atomic regions from SNP 165944 to 166544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,021 DEBUG Processing 795/864 atomic regions from SNP 238368 to 238968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,036 DEBUG Processing 634/1139 atomic regions from SNP 190052 to 190652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,086 DEBUG Processing 777/909 atomic regions from SNP 233034 to 233634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,149 DEBUG Processing 665/1030 atomic regions from SNP 199331 to 199931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,259 DEBUG Processing 555/653 atomic regions from SNP 166244 to 166844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,264 DEBUG Processing 796/864 atomic regions from SNP 238668 to 239268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,290 DEBUG Processing 635/1139 atomic regions from SNP 190352 to 190952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,314 DEBUG Processing 778/909 atomic regions from SNP 233334 to 233934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,389 DEBUG Processing 666/1030 atomic regions from SNP 199631 to 200231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,483 DEBUG Processing 556/653 atomic regions from SNP 166544 to 167144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,519 DEBUG Processing 797/864 atomic regions from SNP 238968 to 239568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,542 DEBUG Processing 779/909 atomic regions from SNP 233634 to 234234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,544 DEBUG Processing 636/1139 atomic regions from SNP 190652 to 191252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,629 DEBUG Processing 667/1030 atomic regions from SNP 199931 to 200531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,720 DEBUG Processing 557/653 atomic regions from SNP 166844 to 167444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,771 DEBUG Processing 780/909 atomic regions from SNP 233934 to 234534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,774 DEBUG Processing 798/864 atomic regions from SNP 239268 to 239868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,797 DEBUG Processing 637/1139 atomic regions from SNP 190952 to 191552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,871 DEBUG Processing 668/1030 atomic regions from SNP 200231 to 200831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,961 DEBUG Processing 558/653 atomic regions from SNP 167144 to 167744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,998 DEBUG Processing 781/909 atomic regions from SNP 234234 to 234834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,027 DEBUG Processing 799/864 atomic regions from SNP 239568 to 240168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,051 DEBUG Processing 638/1139 atomic regions from SNP 191252 to 191852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,111 DEBUG Processing 669/1030 atomic regions from SNP 200531 to 201131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,209 DEBUG Processing 559/653 atomic regions from SNP 167444 to 168044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,240 DEBUG Processing 782/909 atomic regions from SNP 234534 to 235134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,260 DEBUG Processing 800/864 atomic regions from SNP 239868 to 240468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,305 DEBUG Processing 639/1139 atomic regions from SNP 191552 to 192152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,355 DEBUG Processing 670/1030 atomic regions from SNP 200831 to 201431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,460 DEBUG Processing 560/653 atomic regions from SNP 167744 to 168344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,471 DEBUG Processing 783/909 atomic regions from SNP 234834 to 235434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,484 DEBUG Processing 801/864 atomic regions from SNP 240168 to 240768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,561 DEBUG Processing 640/1139 atomic regions from SNP 191852 to 192452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,601 DEBUG Processing 671/1030 atomic regions from SNP 201131 to 201731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,704 DEBUG Processing 784/909 atomic regions from SNP 235134 to 235734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,710 DEBUG Processing 561/653 atomic regions from SNP 168044 to 168644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,717 DEBUG Processing 802/864 atomic regions from SNP 240468 to 241068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,817 DEBUG Processing 641/1139 atomic regions from SNP 192152 to 192752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,845 DEBUG Processing 672/1030 atomic regions from SNP 201431 to 202031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,933 DEBUG Processing 785/909 atomic regions from SNP 235434 to 236034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,951 DEBUG Processing 803/864 atomic regions from SNP 240768 to 241368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,962 DEBUG Processing 562/653 atomic regions from SNP 168344 to 168944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,073 DEBUG Processing 642/1139 atomic regions from SNP 192452 to 193052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,087 DEBUG Processing 673/1030 atomic regions from SNP 201731 to 202331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,161 DEBUG Processing 786/909 atomic regions from SNP 235734 to 236334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,179 DEBUG Processing 804/864 atomic regions from SNP 241068 to 241668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,209 DEBUG Processing 563/653 atomic regions from SNP 168644 to 169244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,325 DEBUG Processing 643/1139 atomic regions from SNP 192752 to 193352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,334 DEBUG Processing 674/1030 atomic regions from SNP 202031 to 202631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,390 DEBUG Processing 787/909 atomic regions from SNP 236034 to 236634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,398 DEBUG Processing 805/864 atomic regions from SNP 241368 to 241968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,453 DEBUG Processing 564/653 atomic regions from SNP 168944 to 169544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,581 DEBUG Processing 644/1139 atomic regions from SNP 193052 to 193652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,582 DEBUG Processing 675/1030 atomic regions from SNP 202331 to 202931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,620 DEBUG Processing 788/909 atomic regions from SNP 236334 to 236934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,621 DEBUG Processing 806/864 atomic regions from SNP 241668 to 242268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,673 DEBUG Processing 565/653 atomic regions from SNP 169244 to 169844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,835 DEBUG Processing 676/1030 atomic regions from SNP 202631 to 203231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,842 DEBUG Processing 645/1139 atomic regions from SNP 193352 to 193952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,846 DEBUG Processing 807/864 atomic regions from SNP 241968 to 242568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,853 DEBUG Processing 789/909 atomic regions from SNP 236634 to 237234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,891 DEBUG Processing 566/653 atomic regions from SNP 169544 to 170144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,072 DEBUG Processing 808/864 atomic regions from SNP 242268 to 242868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,088 DEBUG Processing 790/909 atomic regions from SNP 236934 to 237534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,090 DEBUG Processing 677/1030 atomic regions from SNP 202931 to 203531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,105 DEBUG Processing 646/1139 atomic regions from SNP 193652 to 194252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,114 DEBUG Processing 567/653 atomic regions from SNP 169844 to 170444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,310 DEBUG Processing 809/864 atomic regions from SNP 242568 to 243168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,323 DEBUG Processing 791/909 atomic regions from SNP 237234 to 237834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,342 DEBUG Processing 678/1030 atomic regions from SNP 203231 to 203831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,352 DEBUG Processing 568/653 atomic regions from SNP 170144 to 170744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,363 DEBUG Processing 647/1139 atomic regions from SNP 193952 to 194552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,556 DEBUG Processing 792/909 atomic regions from SNP 237534 to 238134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,565 DEBUG Processing 810/864 atomic regions from SNP 242868 to 243468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,593 DEBUG Processing 679/1030 atomic regions from SNP 203531 to 204131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,607 DEBUG Processing 569/653 atomic regions from SNP 170444 to 171044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,619 DEBUG Processing 648/1139 atomic regions from SNP 194252 to 194852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,785 DEBUG Processing 793/909 atomic regions from SNP 237834 to 238434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,820 DEBUG Processing 811/864 atomic regions from SNP 243168 to 243768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,844 DEBUG Processing 680/1030 atomic regions from SNP 203831 to 204431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,863 DEBUG Processing 570/653 atomic regions from SNP 170744 to 171344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,876 DEBUG Processing 649/1139 atomic regions from SNP 194552 to 195152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,011 DEBUG Processing 794/909 atomic regions from SNP 238134 to 238734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,081 DEBUG Processing 812/864 atomic regions from SNP 243468 to 244068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,096 DEBUG Processing 681/1030 atomic regions from SNP 204131 to 204731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,121 DEBUG Processing 571/653 atomic regions from SNP 171044 to 171644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,133 DEBUG Processing 650/1139 atomic regions from SNP 194852 to 195452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,236 DEBUG Processing 795/909 atomic regions from SNP 238434 to 239034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,332 DEBUG Processing 813/864 atomic regions from SNP 243768 to 244368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,343 DEBUG Processing 682/1030 atomic regions from SNP 204431 to 205031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,375 DEBUG Processing 572/653 atomic regions from SNP 171344 to 171944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,386 DEBUG Processing 651/1139 atomic regions from SNP 195152 to 195752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,456 DEBUG Processing 796/909 atomic regions from SNP 238734 to 239334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,570 DEBUG Processing 814/864 atomic regions from SNP 244068 to 244668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,588 DEBUG Processing 683/1030 atomic regions from SNP 204731 to 205331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,625 DEBUG Processing 573/653 atomic regions from SNP 171644 to 172244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,637 DEBUG Processing 652/1139 atomic regions from SNP 195452 to 196052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,677 DEBUG Processing 797/909 atomic regions from SNP 239034 to 239634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,814 DEBUG Processing 815/864 atomic regions from SNP 244368 to 244968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,832 DEBUG Processing 684/1030 atomic regions from SNP 205031 to 205631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,878 DEBUG Processing 574/653 atomic regions from SNP 171944 to 172544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,887 DEBUG Processing 653/1139 atomic regions from SNP 195752 to 196352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,901 DEBUG Processing 798/909 atomic regions from SNP 239334 to 239934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,067 DEBUG Processing 816/864 atomic regions from SNP 244668 to 245268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,094 DEBUG Processing 685/1030 atomic regions from SNP 205331 to 205931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,128 DEBUG Processing 799/909 atomic regions from SNP 239634 to 240234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,130 DEBUG Processing 575/653 atomic regions from SNP 172244 to 172844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,142 DEBUG Processing 654/1139 atomic regions from SNP 196052 to 196652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,317 DEBUG Processing 817/864 atomic regions from SNP 244968 to 245568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,358 DEBUG Processing 800/909 atomic regions from SNP 239934 to 240534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,368 DEBUG Processing 686/1030 atomic regions from SNP 205631 to 206231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,383 DEBUG Processing 576/653 atomic regions from SNP 172544 to 173144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,395 DEBUG Processing 655/1139 atomic regions from SNP 196352 to 196952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,565 DEBUG Processing 818/864 atomic regions from SNP 245268 to 245868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,585 DEBUG Processing 801/909 atomic regions from SNP 240234 to 240834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,631 DEBUG Processing 577/653 atomic regions from SNP 172844 to 173444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,645 DEBUG Processing 656/1139 atomic regions from SNP 196652 to 197252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,648 DEBUG Processing 687/1030 atomic regions from SNP 205931 to 206531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,807 DEBUG Processing 819/864 atomic regions from SNP 245568 to 246168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,811 DEBUG Processing 802/909 atomic regions from SNP 240534 to 241134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,860 DEBUG Processing 578/653 atomic regions from SNP 173144 to 173744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,895 DEBUG Processing 657/1139 atomic regions from SNP 196952 to 197552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,923 DEBUG Processing 688/1030 atomic regions from SNP 206231 to 206831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,034 DEBUG Processing 803/909 atomic regions from SNP 240834 to 241434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,045 DEBUG Processing 820/864 atomic regions from SNP 245868 to 246468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,084 DEBUG Processing 579/653 atomic regions from SNP 173444 to 174044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,143 DEBUG Processing 658/1139 atomic regions from SNP 197252 to 197852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,197 DEBUG Processing 689/1030 atomic regions from SNP 206531 to 207131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,258 DEBUG Processing 804/909 atomic regions from SNP 241134 to 241734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,289 DEBUG Processing 821/864 atomic regions from SNP 246168 to 246768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,306 DEBUG Processing 580/653 atomic regions from SNP 173744 to 174344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,388 DEBUG Processing 659/1139 atomic regions from SNP 197552 to 198152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,474 DEBUG Processing 690/1030 atomic regions from SNP 206831 to 207431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,480 DEBUG Processing 805/909 atomic regions from SNP 241434 to 242034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,520 DEBUG Processing 822/864 atomic regions from SNP 246468 to 247068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,528 DEBUG Processing 581/653 atomic regions from SNP 174044 to 174644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,632 DEBUG Processing 660/1139 atomic regions from SNP 197852 to 198452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,701 DEBUG Processing 806/909 atomic regions from SNP 241734 to 242334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,735 DEBUG Processing 823/864 atomic regions from SNP 246768 to 247368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,740 DEBUG Processing 691/1030 atomic regions from SNP 207131 to 207731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,747 DEBUG Processing 582/653 atomic regions from SNP 174344 to 174944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,875 DEBUG Processing 661/1139 atomic regions from SNP 198152 to 198752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,922 DEBUG Processing 807/909 atomic regions from SNP 242034 to 242634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,963 DEBUG Processing 824/864 atomic regions from SNP 247068 to 247668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,966 DEBUG Processing 583/653 atomic regions from SNP 174644 to 175244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,005 DEBUG Processing 692/1030 atomic regions from SNP 207431 to 208031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,120 DEBUG Processing 662/1139 atomic regions from SNP 198452 to 199052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,144 DEBUG Processing 808/909 atomic regions from SNP 242334 to 242934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,186 DEBUG Processing 584/653 atomic regions from SNP 174944 to 175544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,201 DEBUG Processing 825/864 atomic regions from SNP 247368 to 247968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,264 DEBUG Processing 693/1030 atomic regions from SNP 207731 to 208331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,364 DEBUG Processing 809/909 atomic regions from SNP 242634 to 243234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,365 DEBUG Processing 663/1139 atomic regions from SNP 198752 to 199352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,415 DEBUG Processing 585/653 atomic regions from SNP 175244 to 175844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,444 DEBUG Processing 826/864 atomic regions from SNP 247668 to 248268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,531 DEBUG Processing 694/1030 atomic regions from SNP 208031 to 208631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,586 DEBUG Processing 810/909 atomic regions from SNP 242934 to 243534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,612 DEBUG Processing 664/1139 atomic regions from SNP 199052 to 199652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,636 DEBUG Processing 586/653 atomic regions from SNP 175544 to 176144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,690 DEBUG Processing 827/864 atomic regions from SNP 247968 to 248568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,800 DEBUG Processing 695/1030 atomic regions from SNP 208331 to 208931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,811 DEBUG Processing 811/909 atomic regions from SNP 243234 to 243834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,854 DEBUG Processing 587/653 atomic regions from SNP 175844 to 176444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,863 DEBUG Processing 665/1139 atomic regions from SNP 199352 to 199952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,902 DEBUG Processing 828/864 atomic regions from SNP 248268 to 248868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,037 DEBUG Processing 812/909 atomic regions from SNP 243534 to 244134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,066 DEBUG Processing 696/1030 atomic regions from SNP 208631 to 209231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,073 DEBUG Processing 588/653 atomic regions from SNP 176144 to 176744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,114 DEBUG Processing 666/1139 atomic regions from SNP 199652 to 200252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,116 DEBUG Processing 829/864 atomic regions from SNP 248568 to 249168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,262 DEBUG Processing 813/909 atomic regions from SNP 243834 to 244434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,294 DEBUG Processing 589/653 atomic regions from SNP 176444 to 177044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,326 DEBUG Processing 697/1030 atomic regions from SNP 208931 to 209531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,333 DEBUG Processing 830/864 atomic regions from SNP 248868 to 249468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,368 DEBUG Processing 667/1139 atomic regions from SNP 199952 to 200552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,485 DEBUG Processing 814/909 atomic regions from SNP 244134 to 244734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,514 DEBUG Processing 590/653 atomic regions from SNP 176744 to 177344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,553 DEBUG Processing 831/864 atomic regions from SNP 249168 to 249768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,592 DEBUG Processing 698/1030 atomic regions from SNP 209231 to 209831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,618 DEBUG Processing 668/1139 atomic regions from SNP 200252 to 200852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,707 DEBUG Processing 815/909 atomic regions from SNP 244434 to 245034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,732 DEBUG Processing 591/653 atomic regions from SNP 177044 to 177644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,795 DEBUG Processing 832/864 atomic regions from SNP 249468 to 250068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,854 DEBUG Processing 699/1030 atomic regions from SNP 209531 to 210131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,868 DEBUG Processing 669/1139 atomic regions from SNP 200552 to 201152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,926 DEBUG Processing 816/909 atomic regions from SNP 244734 to 245334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,948 DEBUG Processing 592/653 atomic regions from SNP 177344 to 177944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,011 DEBUG Processing 833/864 atomic regions from SNP 249768 to 250368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,100 DEBUG Processing 700/1030 atomic regions from SNP 209831 to 210431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,118 DEBUG Processing 670/1139 atomic regions from SNP 200852 to 201452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,150 DEBUG Processing 817/909 atomic regions from SNP 245034 to 245634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,175 DEBUG Processing 593/653 atomic regions from SNP 177644 to 178244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,228 DEBUG Processing 834/864 atomic regions from SNP 250068 to 250668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,359 DEBUG Processing 701/1030 atomic regions from SNP 210131 to 210731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,369 DEBUG Processing 671/1139 atomic regions from SNP 201152 to 201752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,376 DEBUG Processing 818/909 atomic regions from SNP 245334 to 245934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,412 DEBUG Processing 594/653 atomic regions from SNP 177944 to 178544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,464 DEBUG Processing 835/864 atomic regions from SNP 250368 to 250968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,603 DEBUG Processing 819/909 atomic regions from SNP 245634 to 246234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,618 DEBUG Processing 702/1030 atomic regions from SNP 210431 to 211031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,623 DEBUG Processing 672/1139 atomic regions from SNP 201452 to 202052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,639 DEBUG Processing 595/653 atomic regions from SNP 178244 to 178844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,710 DEBUG Processing 836/864 atomic regions from SNP 250668 to 251268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,830 DEBUG Processing 820/909 atomic regions from SNP 245934 to 246534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,870 DEBUG Processing 596/653 atomic regions from SNP 178544 to 179144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,874 DEBUG Processing 673/1139 atomic regions from SNP 201752 to 202352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,888 DEBUG Processing 703/1030 atomic regions from SNP 210731 to 211331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,940 DEBUG Processing 837/864 atomic regions from SNP 250968 to 251568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,054 DEBUG Processing 821/909 atomic regions from SNP 246234 to 246834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,088 DEBUG Processing 597/653 atomic regions from SNP 178844 to 179444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,147 DEBUG Processing 674/1139 atomic regions from SNP 202052 to 202652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,158 DEBUG Processing 838/864 atomic regions from SNP 251268 to 251868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,163 DEBUG Processing 704/1030 atomic regions from SNP 211031 to 211631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,275 DEBUG Processing 822/909 atomic regions from SNP 246534 to 247134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,307 DEBUG Processing 598/653 atomic regions from SNP 179144 to 179744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,392 DEBUG Processing 839/864 atomic regions from SNP 251568 to 252168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,411 DEBUG Processing 705/1030 atomic regions from SNP 211331 to 211931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,430 DEBUG Processing 675/1139 atomic regions from SNP 202352 to 202952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,497 DEBUG Processing 823/909 atomic regions from SNP 246834 to 247434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,525 DEBUG Processing 599/653 atomic regions from SNP 179444 to 180044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,617 DEBUG Processing 840/864 atomic regions from SNP 251868 to 252468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,655 DEBUG Processing 706/1030 atomic regions from SNP 211631 to 212231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,697 DEBUG Processing 676/1139 atomic regions from SNP 202652 to 203252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,720 DEBUG Processing 824/909 atomic regions from SNP 247134 to 247734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,744 DEBUG Processing 600/653 atomic regions from SNP 179744 to 180344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,837 DEBUG Processing 841/864 atomic regions from SNP 252168 to 252768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,899 DEBUG Processing 707/1030 atomic regions from SNP 211931 to 212531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,945 DEBUG Processing 825/909 atomic regions from SNP 247434 to 248034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,956 DEBUG Processing 677/1139 atomic regions from SNP 202952 to 203552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,978 DEBUG Processing 601/653 atomic regions from SNP 180044 to 180644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,066 DEBUG Processing 842/864 atomic regions from SNP 252468 to 253068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,160 DEBUG Processing 708/1030 atomic regions from SNP 212231 to 212831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,171 DEBUG Processing 826/909 atomic regions from SNP 247734 to 248334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,212 DEBUG Processing 678/1139 atomic regions from SNP 203252 to 203852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,231 DEBUG Processing 602/653 atomic regions from SNP 180344 to 180944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,278 DEBUG Processing 843/864 atomic regions from SNP 252768 to 253368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,396 DEBUG Processing 827/909 atomic regions from SNP 248034 to 248634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,433 DEBUG Processing 709/1030 atomic regions from SNP 212531 to 213131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,470 DEBUG Processing 679/1139 atomic regions from SNP 203552 to 204152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,486 DEBUG Processing 603/653 atomic regions from SNP 180644 to 181244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,490 DEBUG Processing 844/864 atomic regions from SNP 253068 to 253668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,618 DEBUG Processing 828/909 atomic regions from SNP 248334 to 248934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,697 DEBUG Processing 710/1030 atomic regions from SNP 212831 to 213431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,722 DEBUG Processing 845/864 atomic regions from SNP 253368 to 253968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,728 DEBUG Processing 604/653 atomic regions from SNP 180944 to 181544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,731 DEBUG Processing 680/1139 atomic regions from SNP 203852 to 204452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,838 DEBUG Processing 829/909 atomic regions from SNP 248634 to 249234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,941 DEBUG Processing 711/1030 atomic regions from SNP 213131 to 213731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,962 DEBUG Processing 846/864 atomic regions from SNP 253668 to 254268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,977 DEBUG Processing 605/653 atomic regions from SNP 181244 to 181844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,005 DEBUG Processing 681/1139 atomic regions from SNP 204152 to 204752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,062 DEBUG Processing 830/909 atomic regions from SNP 248934 to 249534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,182 DEBUG Processing 712/1030 atomic regions from SNP 213431 to 214031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,192 DEBUG Processing 847/864 atomic regions from SNP 253968 to 254568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,232 DEBUG Processing 606/653 atomic regions from SNP 181544 to 182144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,284 DEBUG Processing 831/909 atomic regions from SNP 249234 to 249834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,285 DEBUG Processing 682/1139 atomic regions from SNP 204452 to 205052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,421 DEBUG Processing 713/1030 atomic regions from SNP 213731 to 214331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,427 DEBUG Processing 848/864 atomic regions from SNP 254268 to 254868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,485 DEBUG Processing 607/653 atomic regions from SNP 181844 to 182444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,515 DEBUG Processing 832/909 atomic regions from SNP 249534 to 250134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,540 DEBUG Processing 683/1139 atomic regions from SNP 204752 to 205352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,663 DEBUG Processing 714/1030 atomic regions from SNP 214031 to 214631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,671 DEBUG Processing 849/864 atomic regions from SNP 254568 to 255168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,736 DEBUG Processing 608/653 atomic regions from SNP 182144 to 182744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,738 DEBUG Processing 833/909 atomic regions from SNP 249834 to 250434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,804 DEBUG Processing 684/1139 atomic regions from SNP 205052 to 205652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,906 DEBUG Processing 715/1030 atomic regions from SNP 214331 to 214931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,920 DEBUG Processing 850/864 atomic regions from SNP 254868 to 255468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,962 DEBUG Processing 834/909 atomic regions from SNP 250134 to 250734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,982 DEBUG Processing 609/653 atomic regions from SNP 182444 to 183044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,080 DEBUG Processing 685/1139 atomic regions from SNP 205352 to 205952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,149 DEBUG Processing 716/1030 atomic regions from SNP 214631 to 215231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,165 DEBUG Processing 851/864 atomic regions from SNP 255168 to 255768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,184 DEBUG Processing 835/909 atomic regions from SNP 250434 to 251034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,220 DEBUG Processing 610/653 atomic regions from SNP 182744 to 183344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,359 DEBUG Processing 686/1139 atomic regions from SNP 205652 to 206252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,388 DEBUG Processing 852/864 atomic regions from SNP 255468 to 256068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,393 DEBUG Processing 717/1030 atomic regions from SNP 214931 to 215531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,409 DEBUG Processing 836/909 atomic regions from SNP 250734 to 251334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,457 DEBUG Processing 611/653 atomic regions from SNP 183044 to 183644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,630 DEBUG Processing 853/864 atomic regions from SNP 255768 to 256368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,635 DEBUG Processing 687/1139 atomic regions from SNP 205952 to 206552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,639 DEBUG Processing 837/909 atomic regions from SNP 251034 to 251634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,640 DEBUG Processing 718/1030 atomic regions from SNP 215231 to 215831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,702 DEBUG Processing 612/653 atomic regions from SNP 183344 to 183944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,865 DEBUG Processing 854/864 atomic regions from SNP 256068 to 256668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,873 DEBUG Processing 838/909 atomic regions from SNP 251334 to 251934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,890 DEBUG Processing 719/1030 atomic regions from SNP 215531 to 216131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,895 DEBUG Processing 688/1139 atomic regions from SNP 206252 to 206852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,951 DEBUG Processing 613/653 atomic regions from SNP 183644 to 184244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,084 DEBUG Processing 855/864 atomic regions from SNP 256368 to 256968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,106 DEBUG Processing 839/909 atomic regions from SNP 251634 to 252234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,135 DEBUG Processing 720/1030 atomic regions from SNP 215831 to 216431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,149 DEBUG Processing 689/1139 atomic regions from SNP 206552 to 207152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,196 DEBUG Processing 614/653 atomic regions from SNP 183944 to 184544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,299 DEBUG Processing 856/864 atomic regions from SNP 256668 to 257268 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,335 DEBUG Processing 840/909 atomic regions from SNP 251934 to 252534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,381 DEBUG Processing 721/1030 atomic regions from SNP 216131 to 216731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,402 DEBUG Processing 690/1139 atomic regions from SNP 206852 to 207452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,446 DEBUG Processing 615/653 atomic regions from SNP 184244 to 184844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,512 DEBUG Processing 857/864 atomic regions from SNP 256968 to 257568 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,562 DEBUG Processing 841/909 atomic regions from SNP 252234 to 252834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,626 DEBUG Processing 722/1030 atomic regions from SNP 216431 to 217031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,650 DEBUG Processing 691/1139 atomic regions from SNP 207152 to 207752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,699 DEBUG Processing 616/653 atomic regions from SNP 184544 to 185144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,732 DEBUG Processing 858/864 atomic regions from SNP 257268 to 257868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,786 DEBUG Processing 842/909 atomic regions from SNP 252534 to 253134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,867 DEBUG Processing 723/1030 atomic regions from SNP 216731 to 217331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,899 DEBUG Processing 692/1139 atomic regions from SNP 207452 to 208052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,944 DEBUG Processing 617/653 atomic regions from SNP 184844 to 185444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,953 DEBUG Processing 859/864 atomic regions from SNP 257568 to 258168 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,008 DEBUG Processing 843/909 atomic regions from SNP 252834 to 253434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,112 DEBUG Processing 724/1030 atomic regions from SNP 217031 to 217631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,149 DEBUG Processing 693/1139 atomic regions from SNP 207752 to 208352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,167 DEBUG Processing 860/864 atomic regions from SNP 257868 to 258468 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,185 DEBUG Processing 618/653 atomic regions from SNP 185144 to 185744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,230 DEBUG Processing 844/909 atomic regions from SNP 253134 to 253734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,356 DEBUG Processing 725/1030 atomic regions from SNP 217331 to 217931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,383 DEBUG Processing 861/864 atomic regions from SNP 258168 to 258768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,417 DEBUG Processing 694/1139 atomic regions from SNP 208052 to 208652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,432 DEBUG Processing 619/653 atomic regions from SNP 185444 to 186044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,450 DEBUG Processing 845/909 atomic regions from SNP 253434 to 254034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,600 DEBUG Processing 726/1030 atomic regions from SNP 217631 to 218231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,610 DEBUG Processing 862/864 atomic regions from SNP 258468 to 259068 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,670 DEBUG Processing 620/653 atomic regions from SNP 185744 to 186344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,672 DEBUG Processing 695/1139 atomic regions from SNP 208352 to 208952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,674 DEBUG Processing 846/909 atomic regions from SNP 253734 to 254334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,837 DEBUG Processing 863/864 atomic regions from SNP 258768 to 259368 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,846 DEBUG Processing 727/1030 atomic regions from SNP 217931 to 218531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,899 DEBUG Processing 847/909 atomic regions from SNP 254034 to 254634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,920 DEBUG Processing 621/653 atomic regions from SNP 186044 to 186644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,924 DEBUG Processing 696/1139 atomic regions from SNP 208652 to 209252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,085 DEBUG Processing 864/864 atomic regions from SNP 259068 to 259668 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,090 DEBUG Processing 728/1030 atomic regions from SNP 218231 to 218831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,125 DEBUG Processing 848/909 atomic regions from SNP 254334 to 254934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,164 DEBUG Processing 622/653 atomic regions from SNP 186344 to 186944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,173 DEBUG Processing 697/1139 atomic regions from SNP 208952 to 209552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,214 DEBUG Unique SNPs positions in subchromosome 1: 259669 2025-01-31 09:47:07,352 DEBUG Processing 849/909 atomic regions from SNP 254634 to 255234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,355 DEBUG Processing 729/1030 atomic regions from SNP 218531 to 219131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,387 DEBUG Processing 623/653 atomic regions from SNP 186644 to 187244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,422 DEBUG Processing 698/1139 atomic regions from SNP 209252 to 209852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,575 DEBUG Processing 850/909 atomic regions from SNP 254934 to 255534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,606 DEBUG Processing 624/653 atomic regions from SNP 186944 to 187544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,611 DEBUG Processing 730/1030 atomic regions from SNP 218831 to 219431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,670 DEBUG Processing 699/1139 atomic regions from SNP 209552 to 210152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,796 DEBUG Processing 851/909 atomic regions from SNP 255234 to 255834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,828 DEBUG Processing 625/653 atomic regions from SNP 187244 to 187844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,855 DEBUG Processing 731/1030 atomic regions from SNP 219131 to 219731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,916 DEBUG Processing 700/1139 atomic regions from SNP 209852 to 210452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,014 DEBUG Processing 852/909 atomic regions from SNP 255534 to 256134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,055 DEBUG Processing 626/653 atomic regions from SNP 187544 to 188144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,095 DEBUG Processing 732/1030 atomic regions from SNP 219431 to 220031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,165 DEBUG Processing 701/1139 atomic regions from SNP 210152 to 210752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,233 DEBUG Processing 853/909 atomic regions from SNP 255834 to 256434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,307 DEBUG Processing 627/653 atomic regions from SNP 187844 to 188444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,334 DEBUG Processing 733/1030 atomic regions from SNP 219731 to 220331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,413 DEBUG Processing 702/1139 atomic regions from SNP 210452 to 211052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,452 DEBUG Processing 854/909 atomic regions from SNP 256134 to 256734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,564 DEBUG Processing 628/653 atomic regions from SNP 188144 to 188744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,573 DEBUG Processing 734/1030 atomic regions from SNP 220031 to 220631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,662 DEBUG Processing 703/1139 atomic regions from SNP 210752 to 211352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,672 DEBUG Processing 855/909 atomic regions from SNP 256434 to 257034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,822 DEBUG Processing 735/1030 atomic regions from SNP 220331 to 220931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,823 DEBUG Processing 629/653 atomic regions from SNP 188444 to 189044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,894 DEBUG Processing 856/909 atomic regions from SNP 256734 to 257334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,909 DEBUG Processing 704/1139 atomic regions from SNP 211052 to 211652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,066 DEBUG Processing 736/1030 atomic regions from SNP 220631 to 221231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,075 DEBUG Processing 630/653 atomic regions from SNP 188744 to 189344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,114 DEBUG Processing 857/909 atomic regions from SNP 257034 to 257634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,156 DEBUG Processing 705/1139 atomic regions from SNP 211352 to 211952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,301 DEBUG Processing 631/653 atomic regions from SNP 189044 to 189644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,316 DEBUG Processing 737/1030 atomic regions from SNP 220931 to 221531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,335 DEBUG Processing 858/909 atomic regions from SNP 257334 to 257934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,402 DEBUG Processing 706/1139 atomic regions from SNP 211652 to 212252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,522 DEBUG Processing 632/653 atomic regions from SNP 189344 to 189944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,555 DEBUG Processing 859/909 atomic regions from SNP 257634 to 258234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,571 DEBUG Processing 738/1030 atomic regions from SNP 221231 to 221831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,647 DEBUG Processing 707/1139 atomic regions from SNP 211952 to 212552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,747 DEBUG Processing 633/653 atomic regions from SNP 189644 to 190244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,779 DEBUG Processing 860/909 atomic regions from SNP 257934 to 258534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,844 DEBUG Processing 739/1030 atomic regions from SNP 221531 to 222131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,896 DEBUG Processing 708/1139 atomic regions from SNP 212252 to 212852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,968 DEBUG Processing 634/653 atomic regions from SNP 189944 to 190544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,999 DEBUG Processing 861/909 atomic regions from SNP 258234 to 258834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,118 DEBUG Processing 740/1030 atomic regions from SNP 221831 to 222431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,142 DEBUG Processing 709/1139 atomic regions from SNP 212552 to 213152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,191 DEBUG Processing 635/653 atomic regions from SNP 190244 to 190844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,219 DEBUG Processing 862/909 atomic regions from SNP 258534 to 259134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,385 DEBUG Processing 741/1030 atomic regions from SNP 222131 to 222731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,389 DEBUG Processing 710/1139 atomic regions from SNP 212852 to 213452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,417 DEBUG Processing 636/653 atomic regions from SNP 190544 to 191144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,439 DEBUG Processing 863/909 atomic regions from SNP 258834 to 259434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,637 DEBUG Processing 711/1139 atomic regions from SNP 213152 to 213752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,642 DEBUG Processing 742/1030 atomic regions from SNP 222431 to 223031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,652 DEBUG Processing 637/653 atomic regions from SNP 190844 to 191444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,659 DEBUG Processing 864/909 atomic regions from SNP 259134 to 259734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,882 DEBUG Processing 638/653 atomic regions from SNP 191144 to 191744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,885 DEBUG Processing 865/909 atomic regions from SNP 259434 to 260034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,886 DEBUG Processing 743/1030 atomic regions from SNP 222731 to 223331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,887 DEBUG Processing 712/1139 atomic regions from SNP 213452 to 214052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,104 DEBUG Processing 639/653 atomic regions from SNP 191444 to 192044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,112 DEBUG Processing 866/909 atomic regions from SNP 259734 to 260334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,137 DEBUG Processing 713/1139 atomic regions from SNP 213752 to 214352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,143 DEBUG Processing 744/1030 atomic regions from SNP 223031 to 223631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,339 DEBUG Processing 867/909 atomic regions from SNP 260034 to 260634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,351 DEBUG Processing 640/653 atomic regions from SNP 191744 to 192344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,386 DEBUG Processing 714/1139 atomic regions from SNP 214052 to 214652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,399 DEBUG Processing 745/1030 atomic regions from SNP 223331 to 223931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,561 DEBUG Processing 868/909 atomic regions from SNP 260334 to 260934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,612 DEBUG Processing 641/653 atomic regions from SNP 192044 to 192644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,633 DEBUG Processing 715/1139 atomic regions from SNP 214352 to 214952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,661 DEBUG Processing 746/1030 atomic regions from SNP 223631 to 224231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,780 DEBUG Processing 869/909 atomic regions from SNP 260634 to 261234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,869 DEBUG Processing 642/653 atomic regions from SNP 192344 to 192944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,880 DEBUG Processing 716/1139 atomic regions from SNP 214652 to 215252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,908 DEBUG Processing 747/1030 atomic regions from SNP 223931 to 224531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,996 DEBUG Processing 870/909 atomic regions from SNP 260934 to 261534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,112 DEBUG Processing 643/653 atomic regions from SNP 192644 to 193244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,141 DEBUG Processing 717/1139 atomic regions from SNP 214952 to 215552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,155 DEBUG Processing 748/1030 atomic regions from SNP 224231 to 224831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,213 DEBUG Processing 871/909 atomic regions from SNP 261234 to 261834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,358 DEBUG Processing 644/653 atomic regions from SNP 192944 to 193544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,409 DEBUG Processing 718/1139 atomic regions from SNP 215252 to 215852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,418 DEBUG Processing 749/1030 atomic regions from SNP 224531 to 225131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,432 DEBUG Processing 872/909 atomic regions from SNP 261534 to 262134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,600 DEBUG Processing 645/653 atomic regions from SNP 193244 to 193844 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,653 DEBUG Processing 873/909 atomic regions from SNP 261834 to 262434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,659 DEBUG Processing 719/1139 atomic regions from SNP 215552 to 216152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,688 DEBUG Processing 750/1030 atomic regions from SNP 224831 to 225431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,854 DEBUG Processing 646/653 atomic regions from SNP 193544 to 194144 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,877 DEBUG Processing 874/909 atomic regions from SNP 262134 to 262734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,909 DEBUG Processing 720/1139 atomic regions from SNP 215852 to 216452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,960 DEBUG Processing 751/1030 atomic regions from SNP 225131 to 225731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,097 DEBUG Processing 875/909 atomic regions from SNP 262434 to 263034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,113 DEBUG Processing 647/653 atomic regions from SNP 193844 to 194444 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,157 DEBUG Processing 721/1139 atomic regions from SNP 216152 to 216752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,220 DEBUG Processing 752/1030 atomic regions from SNP 225431 to 226031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,319 DEBUG Processing 876/909 atomic regions from SNP 262734 to 263334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,366 DEBUG Processing 648/653 atomic regions from SNP 194144 to 194744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,407 DEBUG Processing 722/1139 atomic regions from SNP 216452 to 217052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,467 DEBUG Processing 753/1030 atomic regions from SNP 225731 to 226331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,542 DEBUG Processing 877/909 atomic regions from SNP 263034 to 263634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,616 DEBUG Processing 649/653 atomic regions from SNP 194444 to 195044 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,654 DEBUG Processing 723/1139 atomic regions from SNP 216752 to 217352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,710 DEBUG Processing 754/1030 atomic regions from SNP 226031 to 226631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,762 DEBUG Processing 878/909 atomic regions from SNP 263334 to 263934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,868 DEBUG Processing 650/653 atomic regions from SNP 194744 to 195344 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,902 DEBUG Processing 724/1139 atomic regions from SNP 217052 to 217652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,954 DEBUG Processing 755/1030 atomic regions from SNP 226331 to 226931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,984 DEBUG Processing 879/909 atomic regions from SNP 263634 to 264234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,123 DEBUG Processing 651/653 atomic regions from SNP 195044 to 195644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,151 DEBUG Processing 725/1139 atomic regions from SNP 217352 to 217952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,197 DEBUG Processing 756/1030 atomic regions from SNP 226631 to 227231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,209 DEBUG Processing 880/909 atomic regions from SNP 263934 to 264534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,380 DEBUG Processing 652/653 atomic regions from SNP 195344 to 195944 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,405 DEBUG Processing 726/1139 atomic regions from SNP 217652 to 218252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,437 DEBUG Processing 881/909 atomic regions from SNP 264234 to 264834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,455 DEBUG Processing 757/1030 atomic regions from SNP 226931 to 227531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,638 DEBUG Processing 653/653 atomic regions from SNP 195644 to 196244 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,658 DEBUG Processing 727/1139 atomic regions from SNP 217952 to 218552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,666 DEBUG Processing 882/909 atomic regions from SNP 264534 to 265134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,732 DEBUG Processing 758/1030 atomic regions from SNP 227231 to 227831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,782 DEBUG Unique SNPs positions in subchromosome 2: 196245 2025-01-31 09:47:14,893 DEBUG Processing 883/909 atomic regions from SNP 264834 to 265434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,914 DEBUG Processing 728/1139 atomic regions from SNP 218252 to 218852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,003 DEBUG Processing 759/1030 atomic regions from SNP 227531 to 228131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,120 DEBUG Processing 884/909 atomic regions from SNP 265134 to 265734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,165 DEBUG Processing 729/1139 atomic regions from SNP 218552 to 219152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,271 DEBUG Processing 760/1030 atomic regions from SNP 227831 to 228431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,341 DEBUG Processing 885/909 atomic regions from SNP 265434 to 266034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,416 DEBUG Processing 730/1139 atomic regions from SNP 218852 to 219452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,527 DEBUG Processing 761/1030 atomic regions from SNP 228131 to 228731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,563 DEBUG Processing 886/909 atomic regions from SNP 265734 to 266334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,669 DEBUG Processing 731/1139 atomic regions from SNP 219152 to 219752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,783 DEBUG Processing 887/909 atomic regions from SNP 266034 to 266634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,788 DEBUG Processing 762/1030 atomic regions from SNP 228431 to 229031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,936 DEBUG Processing 732/1139 atomic regions from SNP 219452 to 220052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,006 DEBUG Processing 888/909 atomic regions from SNP 266334 to 266934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,063 DEBUG Processing 763/1030 atomic regions from SNP 228731 to 229331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,195 DEBUG Processing 733/1139 atomic regions from SNP 219752 to 220352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,227 DEBUG Processing 889/909 atomic regions from SNP 266634 to 267234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,331 DEBUG Processing 764/1030 atomic regions from SNP 229031 to 229631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,451 DEBUG Processing 890/909 atomic regions from SNP 266934 to 267534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,470 DEBUG Processing 734/1139 atomic regions from SNP 220052 to 220652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,582 DEBUG Processing 765/1030 atomic regions from SNP 229331 to 229931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,675 DEBUG Processing 891/909 atomic regions from SNP 267234 to 267834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,746 DEBUG Processing 735/1139 atomic regions from SNP 220352 to 220952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,839 DEBUG Processing 766/1030 atomic regions from SNP 229631 to 230231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,899 DEBUG Processing 892/909 atomic regions from SNP 267534 to 268134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,023 DEBUG Processing 736/1139 atomic regions from SNP 220652 to 221252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,080 DEBUG Processing 767/1030 atomic regions from SNP 229931 to 230531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,120 DEBUG Processing 893/909 atomic regions from SNP 267834 to 268434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,282 DEBUG Processing 737/1139 atomic regions from SNP 220952 to 221552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,340 DEBUG Processing 894/909 atomic regions from SNP 268134 to 268734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,342 DEBUG Processing 768/1030 atomic regions from SNP 230231 to 230831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,532 DEBUG Processing 738/1139 atomic regions from SNP 221252 to 221852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,564 DEBUG Processing 895/909 atomic regions from SNP 268434 to 269034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,599 DEBUG Processing 769/1030 atomic regions from SNP 230531 to 231131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,782 DEBUG Processing 739/1139 atomic regions from SNP 221552 to 222152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,789 DEBUG Processing 896/909 atomic regions from SNP 268734 to 269334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,864 DEBUG Processing 770/1030 atomic regions from SNP 230831 to 231431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,013 DEBUG Processing 897/909 atomic regions from SNP 269034 to 269634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,033 DEBUG Processing 740/1139 atomic regions from SNP 221852 to 222452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,114 DEBUG Processing 771/1030 atomic regions from SNP 231131 to 231731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,236 DEBUG Processing 898/909 atomic regions from SNP 269334 to 269934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,283 DEBUG Processing 741/1139 atomic regions from SNP 222152 to 222752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,369 DEBUG Processing 772/1030 atomic regions from SNP 231431 to 232031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,458 DEBUG Processing 899/909 atomic regions from SNP 269634 to 270234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,532 DEBUG Processing 742/1139 atomic regions from SNP 222452 to 223052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,632 DEBUG Processing 773/1030 atomic regions from SNP 231731 to 232331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,678 DEBUG Processing 900/909 atomic regions from SNP 269934 to 270534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,777 DEBUG Processing 743/1139 atomic regions from SNP 222752 to 223352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,875 DEBUG Processing 774/1030 atomic regions from SNP 232031 to 232631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,898 DEBUG Processing 901/909 atomic regions from SNP 270234 to 270834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,021 DEBUG Processing 744/1139 atomic regions from SNP 223052 to 223652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,114 DEBUG Processing 775/1030 atomic regions from SNP 232331 to 232931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,118 DEBUG Processing 902/909 atomic regions from SNP 270534 to 271134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,267 DEBUG Processing 745/1139 atomic regions from SNP 223352 to 223952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,341 DEBUG Processing 903/909 atomic regions from SNP 270834 to 271434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,355 DEBUG Processing 776/1030 atomic regions from SNP 232631 to 233231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,514 DEBUG Processing 746/1139 atomic regions from SNP 223652 to 224252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,563 DEBUG Processing 904/909 atomic regions from SNP 271134 to 271734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,597 DEBUG Processing 777/1030 atomic regions from SNP 232931 to 233531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,763 DEBUG Processing 747/1139 atomic regions from SNP 223952 to 224552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,788 DEBUG Processing 905/909 atomic regions from SNP 271434 to 272034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,839 DEBUG Processing 778/1030 atomic regions from SNP 233231 to 233831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,011 DEBUG Processing 906/909 atomic regions from SNP 271734 to 272334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,015 DEBUG Processing 748/1139 atomic regions from SNP 224252 to 224852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,078 DEBUG Processing 779/1030 atomic regions from SNP 233531 to 234131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,236 DEBUG Processing 907/909 atomic regions from SNP 272034 to 272634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,272 DEBUG Processing 749/1139 atomic regions from SNP 224552 to 225152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,319 DEBUG Processing 780/1030 atomic regions from SNP 233831 to 234431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,459 DEBUG Processing 908/909 atomic regions from SNP 272334 to 272934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,548 DEBUG Processing 750/1139 atomic regions from SNP 224852 to 225452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,558 DEBUG Processing 781/1030 atomic regions from SNP 234131 to 234731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,677 DEBUG Processing 909/909 atomic regions from SNP 272634 to 273234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,784 DEBUG Unique SNPs positions in subchromosome 1: 273235 2025-01-31 09:47:20,798 DEBUG Processing 782/1030 atomic regions from SNP 234431 to 235031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,809 DEBUG Processing 751/1139 atomic regions from SNP 225152 to 225752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,039 DEBUG Processing 783/1030 atomic regions from SNP 234731 to 235331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,091 DEBUG Processing 752/1139 atomic regions from SNP 225452 to 226052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,282 DEBUG Processing 784/1030 atomic regions from SNP 235031 to 235631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,372 DEBUG Processing 753/1139 atomic regions from SNP 225752 to 226352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,522 DEBUG Processing 785/1030 atomic regions from SNP 235331 to 235931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,637 DEBUG Processing 754/1139 atomic regions from SNP 226052 to 226652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,762 DEBUG Processing 786/1030 atomic regions from SNP 235631 to 236231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,910 DEBUG Processing 755/1139 atomic regions from SNP 226352 to 226952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,001 DEBUG Processing 787/1030 atomic regions from SNP 235931 to 236531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,180 DEBUG Processing 756/1139 atomic regions from SNP 226652 to 227252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,240 DEBUG Processing 788/1030 atomic regions from SNP 236231 to 236831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,456 DEBUG Processing 757/1139 atomic regions from SNP 226952 to 227552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,480 DEBUG Processing 789/1030 atomic regions from SNP 236531 to 237131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,722 DEBUG Processing 790/1030 atomic regions from SNP 236831 to 237431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,736 DEBUG Processing 758/1139 atomic regions from SNP 227252 to 227852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,966 DEBUG Processing 791/1030 atomic regions from SNP 237131 to 237731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,019 DEBUG Processing 759/1139 atomic regions from SNP 227552 to 228152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,213 DEBUG Processing 792/1030 atomic regions from SNP 237431 to 238031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,299 DEBUG Processing 760/1139 atomic regions from SNP 227852 to 228452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,455 DEBUG Processing 793/1030 atomic regions from SNP 237731 to 238331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,581 DEBUG Processing 761/1139 atomic regions from SNP 228152 to 228752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,694 DEBUG Processing 794/1030 atomic regions from SNP 238031 to 238631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,852 DEBUG Processing 762/1139 atomic regions from SNP 228452 to 229052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,932 DEBUG Processing 795/1030 atomic regions from SNP 238331 to 238931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,118 DEBUG Processing 763/1139 atomic regions from SNP 228752 to 229352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,169 DEBUG Processing 796/1030 atomic regions from SNP 238631 to 239231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,397 DEBUG Processing 764/1139 atomic regions from SNP 229052 to 229652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,411 DEBUG Processing 797/1030 atomic regions from SNP 238931 to 239531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,650 DEBUG Processing 798/1030 atomic regions from SNP 239231 to 239831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,681 DEBUG Processing 765/1139 atomic regions from SNP 229352 to 229952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,890 DEBUG Processing 799/1030 atomic regions from SNP 239531 to 240131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,959 DEBUG Processing 766/1139 atomic regions from SNP 229652 to 230252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,129 DEBUG Processing 800/1030 atomic regions from SNP 239831 to 240431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,223 DEBUG Processing 767/1139 atomic regions from SNP 229952 to 230552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,369 DEBUG Processing 801/1030 atomic regions from SNP 240131 to 240731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,487 DEBUG Processing 768/1139 atomic regions from SNP 230252 to 230852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,612 DEBUG Processing 802/1030 atomic regions from SNP 240431 to 241031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,764 DEBUG Processing 769/1139 atomic regions from SNP 230552 to 231152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,849 DEBUG Processing 803/1030 atomic regions from SNP 240731 to 241331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,046 DEBUG Processing 770/1139 atomic regions from SNP 230852 to 231452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,090 DEBUG Processing 804/1030 atomic regions from SNP 241031 to 241631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,321 DEBUG Processing 771/1139 atomic regions from SNP 231152 to 231752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,329 DEBUG Processing 805/1030 atomic regions from SNP 241331 to 241931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,570 DEBUG Processing 806/1030 atomic regions from SNP 241631 to 242231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,605 DEBUG Processing 772/1139 atomic regions from SNP 231452 to 232052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,813 DEBUG Processing 807/1030 atomic regions from SNP 241931 to 242531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,889 DEBUG Processing 773/1139 atomic regions from SNP 231752 to 232352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,053 DEBUG Processing 808/1030 atomic regions from SNP 242231 to 242831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,169 DEBUG Processing 774/1139 atomic regions from SNP 232052 to 232652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,291 DEBUG Processing 809/1030 atomic regions from SNP 242531 to 243131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,442 DEBUG Processing 775/1139 atomic regions from SNP 232352 to 232952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,529 DEBUG Processing 810/1030 atomic regions from SNP 242831 to 243431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,704 DEBUG Processing 776/1139 atomic regions from SNP 232652 to 233252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,769 DEBUG Processing 811/1030 atomic regions from SNP 243131 to 243731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,975 DEBUG Processing 777/1139 atomic regions from SNP 232952 to 233552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,007 DEBUG Processing 812/1030 atomic regions from SNP 243431 to 244031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,246 DEBUG Processing 813/1030 atomic regions from SNP 243731 to 244331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,254 DEBUG Processing 778/1139 atomic regions from SNP 233252 to 233852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,486 DEBUG Processing 814/1030 atomic regions from SNP 244031 to 244631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,524 DEBUG Processing 779/1139 atomic regions from SNP 233552 to 234152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,726 DEBUG Processing 815/1030 atomic regions from SNP 244331 to 244931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,791 DEBUG Processing 780/1139 atomic regions from SNP 233852 to 234452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,963 DEBUG Processing 816/1030 atomic regions from SNP 244631 to 245231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,064 DEBUG Processing 781/1139 atomic regions from SNP 234152 to 234752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,199 DEBUG Processing 817/1030 atomic regions from SNP 244931 to 245531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,339 DEBUG Processing 782/1139 atomic regions from SNP 234452 to 235052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,435 DEBUG Processing 818/1030 atomic regions from SNP 245231 to 245831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,619 DEBUG Processing 783/1139 atomic regions from SNP 234752 to 235352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,673 DEBUG Processing 819/1030 atomic regions from SNP 245531 to 246131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,899 DEBUG Processing 784/1139 atomic regions from SNP 235052 to 235652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,913 DEBUG Processing 820/1030 atomic regions from SNP 245831 to 246431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,155 DEBUG Processing 821/1030 atomic regions from SNP 246131 to 246731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,174 DEBUG Processing 785/1139 atomic regions from SNP 235352 to 235952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,394 DEBUG Processing 822/1030 atomic regions from SNP 246431 to 247031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,445 DEBUG Processing 786/1139 atomic regions from SNP 235652 to 236252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,645 DEBUG Processing 823/1030 atomic regions from SNP 246731 to 247331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,720 DEBUG Processing 787/1139 atomic regions from SNP 235952 to 236552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,884 DEBUG Processing 824/1030 atomic regions from SNP 247031 to 247631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,978 DEBUG Processing 788/1139 atomic regions from SNP 236252 to 236852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,125 DEBUG Processing 825/1030 atomic regions from SNP 247331 to 247931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,226 DEBUG Processing 789/1139 atomic regions from SNP 236552 to 237152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,367 DEBUG Processing 826/1030 atomic regions from SNP 247631 to 248231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,472 DEBUG Processing 790/1139 atomic regions from SNP 236852 to 237452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,606 DEBUG Processing 827/1030 atomic regions from SNP 247931 to 248531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,714 DEBUG Processing 791/1139 atomic regions from SNP 237152 to 237752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,845 DEBUG Processing 828/1030 atomic regions from SNP 248231 to 248831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,958 DEBUG Processing 792/1139 atomic regions from SNP 237452 to 238052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,082 DEBUG Processing 829/1030 atomic regions from SNP 248531 to 249131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,202 DEBUG Processing 793/1139 atomic regions from SNP 237752 to 238352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,319 DEBUG Processing 830/1030 atomic regions from SNP 248831 to 249431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,448 DEBUG Processing 794/1139 atomic regions from SNP 238052 to 238652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,557 DEBUG Processing 831/1030 atomic regions from SNP 249131 to 249731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,695 DEBUG Processing 795/1139 atomic regions from SNP 238352 to 238952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,793 DEBUG Processing 832/1030 atomic regions from SNP 249431 to 250031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,944 DEBUG Processing 796/1139 atomic regions from SNP 238652 to 239252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,031 DEBUG Processing 833/1030 atomic regions from SNP 249731 to 250331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,192 DEBUG Processing 797/1139 atomic regions from SNP 238952 to 239552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,269 DEBUG Processing 834/1030 atomic regions from SNP 250031 to 250631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,438 DEBUG Processing 798/1139 atomic regions from SNP 239252 to 239852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,510 DEBUG Processing 835/1030 atomic regions from SNP 250331 to 250931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,539 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:47:33,684 DEBUG Processing 799/1139 atomic regions from SNP 239552 to 240152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,750 DEBUG Processing 836/1030 atomic regions from SNP 250631 to 251231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,935 DEBUG Processing 800/1139 atomic regions from SNP 239852 to 240452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,991 DEBUG Processing 837/1030 atomic regions from SNP 250931 to 251531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,202 DEBUG Processing 801/1139 atomic regions from SNP 240152 to 240752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,231 DEBUG Processing 838/1030 atomic regions from SNP 251231 to 251831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,464 DEBUG Processing 802/1139 atomic regions from SNP 240452 to 241052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,472 DEBUG Processing 839/1030 atomic regions from SNP 251531 to 252131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,712 DEBUG Processing 803/1139 atomic regions from SNP 240752 to 241352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,733 DEBUG Processing 840/1030 atomic regions from SNP 251831 to 252431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,965 DEBUG Processing 804/1139 atomic regions from SNP 241052 to 241652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,998 DEBUG Processing 841/1030 atomic regions from SNP 252131 to 252731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,215 DEBUG Processing 805/1139 atomic regions from SNP 241352 to 241952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,252 DEBUG Processing 842/1030 atomic regions from SNP 252431 to 253031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,468 DEBUG Processing 806/1139 atomic regions from SNP 241652 to 242252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,511 DEBUG Processing 843/1030 atomic regions from SNP 252731 to 253331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,716 DEBUG Processing 807/1139 atomic regions from SNP 241952 to 242552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,757 DEBUG Processing 844/1030 atomic regions from SNP 253031 to 253631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,966 DEBUG Processing 808/1139 atomic regions from SNP 242252 to 242852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,004 DEBUG Processing 845/1030 atomic regions from SNP 253331 to 253931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,134 DEBUG Subchromosome time: 193.93208965659142, subchromosome SNPs: 196245 2025-01-31 09:47:36,135 DEBUG Estimated BADs: [2.81, 0.94, 2.81, 0.94, 5.63, 0.94, 5.63, 2.81, 0.70, 5.63, 5.63, 2.81, 0.47, 1.41, 2.81, 0.70, 1.41, 2.81, 0.56, 1.41, 2.81, 5.63, 0.94, 0.28, 2.81, 8.44, 5.63, 2.81, 8.44, 2.81, 8.44, 2.81, 11.26] SNP counts: [6117, 2798, 13442, 9102, 246, 18615, 1293, 3200, 8564, 3041, 9124, 3655, 4150, 4207, 14405, 29978, 7223, 6584, 5420, 14396, 9944, 7157, 2795, 3193, 2950, 6681, 12829, 3067, 24584, 7829, 8379, 3247, 4448] SNP IDs counts: [6117, 2798, 13442, 9102, 246, 18615, 1293, 3200, 8564, 3041, 9124, 3655, 4150, 4207, 14405, 29978, 7223, 6584, 5420, 14396, 9944, 7157, 2795, 3193, 2950, 6681, 12829, 3067, 24584, 7829, 8379, 3247, 4448] Critical gap: 683352bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 6.84Mbp, 8.52Mbp, 16.19Mbp, 21.71Mbp, 21.84Mbp, 32.61Mbp, 33.30Mbp, 35.06Mbp, 40.13Mbp, 41.86Mbp[0.87Mbp], 47.64Mbp, 49.69Mbp, 52.16Mbp, 54.54Mbp, 64.09Mbp, 81.88Mbp, 85.87Mbp, 89.63Mbp, 92.90Mbp, 100.99Mbp, 106.44Mbp, 110.28Mbp, 111.91Mbp, 114.05Mbp, 115.82Mbp, 119.39Mbp, 127.01Mbp, 128.63Mbp, 141.65Mbp, 147.90Mbp, 152.24Mbp, 153.94Mbp, 156.51Mbp] 2025-01-31 09:47:36,135 DEBUG chr4 time: 193.93274156190455 s 2025-01-31 09:47:36,214 DEBUG Processing 809/1139 atomic regions from SNP 242552 to 243152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,246 DEBUG Processing 846/1030 atomic regions from SNP 253631 to 254231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,302 DEBUG chr4: Fitting background model for 33 segments 2025-01-31 09:47:36,464 DEBUG Processing 810/1139 atomic regions from SNP 242852 to 243452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,487 DEBUG Processing 847/1030 atomic regions from SNP 253931 to 254531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,712 DEBUG Processing 811/1139 atomic regions from SNP 243152 to 243752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,729 DEBUG Processing 848/1030 atomic regions from SNP 254231 to 254831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,962 DEBUG Processing 812/1139 atomic regions from SNP 243452 to 244052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,969 DEBUG Processing 849/1030 atomic regions from SNP 254531 to 255131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,211 DEBUG Processing 813/1139 atomic regions from SNP 243752 to 244352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,212 DEBUG Processing 850/1030 atomic regions from SNP 254831 to 255431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,457 DEBUG Processing 851/1030 atomic regions from SNP 255131 to 255731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,470 DEBUG Processing 814/1139 atomic regions from SNP 244052 to 244652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,699 DEBUG Processing 852/1030 atomic regions from SNP 255431 to 256031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,722 DEBUG Processing 815/1139 atomic regions from SNP 244352 to 244952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,943 DEBUG Processing 853/1030 atomic regions from SNP 255731 to 256331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,976 DEBUG Processing 816/1139 atomic regions from SNP 244652 to 245252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,185 DEBUG Processing 854/1030 atomic regions from SNP 256031 to 256631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,226 DEBUG Processing 817/1139 atomic regions from SNP 244952 to 245552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,430 DEBUG Processing 855/1030 atomic regions from SNP 256331 to 256931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,477 DEBUG Processing 818/1139 atomic regions from SNP 245252 to 245852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,675 DEBUG Processing 856/1030 atomic regions from SNP 256631 to 257231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,729 DEBUG Processing 819/1139 atomic regions from SNP 245552 to 246152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,919 DEBUG Processing 857/1030 atomic regions from SNP 256931 to 257531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,976 DEBUG Processing 820/1139 atomic regions from SNP 245852 to 246452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,157 DEBUG Processing 858/1030 atomic regions from SNP 257231 to 257831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,224 DEBUG Processing 821/1139 atomic regions from SNP 246152 to 246752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,396 DEBUG Processing 859/1030 atomic regions from SNP 257531 to 258131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,473 DEBUG Processing 822/1139 atomic regions from SNP 246452 to 247052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,640 DEBUG Processing 860/1030 atomic regions from SNP 257831 to 258431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,712 DEBUG Subchromosome time: 255.91196129471064, subchromosome SNPs: 259669 2025-01-31 09:47:39,712 DEBUG Estimated BADs: [2.61, 0.87, 2.61, 7.82, 2.61, 10.42, 5.21, 0.52, 1.30, 0.65, 2.61, 0.43, 2.61, 0.52, 2.61, 0.65, 2.61, 5.21, 1.30, 5.21, 10.42, 5.21, 2.61, 7.82, 2.61, 10.42, 2.61, 7.82, 2.61, 7.82, 2.61, 5.21] SNP counts: [4908, 22667, 4825, 3986, 8071, 1893, 14221, 3892, 8399, 9300, 5757, 15262, 9288, 5699, 11137, 18326, 23384, 9253, 1992, 6890, 4011, 4840, 3310, 9857, 8130, 570, 7601, 7612, 1518, 11422, 2177, 9471] SNP IDs counts: [4908, 22667, 4825, 3986, 8071, 1893, 14221, 3892, 8399, 9300, 5757, 15262, 9288, 5699, 11137, 18326, 23384, 9253, 1992, 6890, 4011, 4840, 3310, 9857, 8130, 570, 7601, 7612, 1518, 11422, 2177, 9471] Critical gap: 670547bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.88Mbp, 20.68Mbp, 23.40Mbp, 25.55Mbp, 30.19Mbp, 31.24Mbp, 38.86Mbp, 41.10Mbp, 45.93Mbp, 51.21Mbp, 54.27Mbp, 63.34Mbp, 68.37Mbp, 71.78Mbp, 77.80Mbp, 88.55Mbp, 103.65Mbp, 108.80Mbp, 110.09Mbp, 113.72Mbp, 115.82Mbp, 118.36Mbp, 120.08Mbp, 125.33Mbp, 129.71Mbp, 130.06Mbp, 134.14Mbp, 138.28Mbp, 139.14Mbp, 145.23Mbp, 146.66Mbp, 151.83Mbp] 2025-01-31 09:47:39,712 DEBUG chr5 time: 255.91262244805694 s 2025-01-31 09:47:39,724 DEBUG Processing 823/1139 atomic regions from SNP 246752 to 247352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,849 DEBUG chr5: Fitting background model for 32 segments 2025-01-31 09:47:39,883 DEBUG Processing 861/1030 atomic regions from SNP 258131 to 258731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,973 DEBUG Processing 824/1139 atomic regions from SNP 247052 to 247652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,129 DEBUG Processing 862/1030 atomic regions from SNP 258431 to 259031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,221 DEBUG Processing 825/1139 atomic regions from SNP 247352 to 247952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,370 DEBUG Processing 863/1030 atomic regions from SNP 258731 to 259331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,467 DEBUG Processing 826/1139 atomic regions from SNP 247652 to 248252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,613 DEBUG Processing 864/1030 atomic regions from SNP 259031 to 259631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,717 DEBUG Processing 827/1139 atomic regions from SNP 247952 to 248552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,856 DEBUG Processing 865/1030 atomic regions from SNP 259331 to 259931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,993 DEBUG Processing 828/1139 atomic regions from SNP 248252 to 248852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,102 DEBUG Processing 866/1030 atomic regions from SNP 259631 to 260231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,264 DEBUG Processing 829/1139 atomic regions from SNP 248552 to 249152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,350 DEBUG Processing 867/1030 atomic regions from SNP 259931 to 260531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,522 DEBUG Processing 830/1139 atomic regions from SNP 248852 to 249452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,597 DEBUG Processing 868/1030 atomic regions from SNP 260231 to 260831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,772 DEBUG Processing 831/1139 atomic regions from SNP 249152 to 249752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,844 DEBUG Processing 869/1030 atomic regions from SNP 260531 to 261131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,021 DEBUG Processing 832/1139 atomic regions from SNP 249452 to 250052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,084 DEBUG Processing 870/1030 atomic regions from SNP 260831 to 261431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,269 DEBUG Processing 833/1139 atomic regions from SNP 249752 to 250352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,324 DEBUG Processing 871/1030 atomic regions from SNP 261131 to 261731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,518 DEBUG Processing 834/1139 atomic regions from SNP 250052 to 250652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,562 DEBUG Processing 872/1030 atomic regions from SNP 261431 to 262031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,765 DEBUG Processing 835/1139 atomic regions from SNP 250352 to 250952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,806 DEBUG Processing 873/1030 atomic regions from SNP 261731 to 262331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,013 DEBUG Processing 836/1139 atomic regions from SNP 250652 to 251252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,050 DEBUG Processing 874/1030 atomic regions from SNP 262031 to 262631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,261 DEBUG Processing 837/1139 atomic regions from SNP 250952 to 251552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,295 DEBUG Processing 875/1030 atomic regions from SNP 262331 to 262931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,511 DEBUG Processing 838/1139 atomic regions from SNP 251252 to 251852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,538 DEBUG Processing 876/1030 atomic regions from SNP 262631 to 263231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,768 DEBUG Processing 839/1139 atomic regions from SNP 251552 to 252152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,779 DEBUG Processing 877/1030 atomic regions from SNP 262931 to 263531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,021 DEBUG Processing 840/1139 atomic regions from SNP 251852 to 252452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,022 DEBUG Processing 878/1030 atomic regions from SNP 263231 to 263831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,265 DEBUG Processing 879/1030 atomic regions from SNP 263531 to 264131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,273 DEBUG Processing 841/1139 atomic regions from SNP 252152 to 252752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,509 DEBUG Processing 880/1030 atomic regions from SNP 263831 to 264431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,525 DEBUG Processing 842/1139 atomic regions from SNP 252452 to 253052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,762 DEBUG Processing 881/1030 atomic regions from SNP 264131 to 264731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,777 DEBUG Processing 843/1139 atomic regions from SNP 252752 to 253352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,028 DEBUG Processing 844/1139 atomic regions from SNP 253052 to 253652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,031 DEBUG Processing 882/1030 atomic regions from SNP 264431 to 265031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,276 DEBUG Processing 845/1139 atomic regions from SNP 253352 to 253952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,293 DEBUG Processing 883/1030 atomic regions from SNP 264731 to 265331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,523 DEBUG Processing 846/1139 atomic regions from SNP 253652 to 254252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,533 DEBUG Processing 884/1030 atomic regions from SNP 265031 to 265631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,771 DEBUG Processing 847/1139 atomic regions from SNP 253952 to 254552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,779 DEBUG Subchromosome time: 265.0760936830193, subchromosome SNPs: 273235 2025-01-31 09:47:45,780 DEBUG Estimated BADs: [0.91, 2.74, 1.37, 5.49, 1.37, 2.74, 1.37, 0.27, 2.74, 19.21, 2.74, 0.91, 2.74, 5.49, 19.21, 2.74, 21.95, 5.49, 8.23, 2.74, 13.72, 1.37, 8.23, 2.74, 8.23, 2.74, 5.49, 2.74, 10.98, 2.74, 0.34, 1.37, 0.39, 2.74, 0.46, 2.74, 0.30] SNP counts: [9139, 3010, 14451, 1076, 12390, 16064, 11069, 10332, 3800, 902, 33890, 14571, 8040, 6933, 4961, 5977, 4226, 6273, 10238, 2397, 3292, 11157, 2042, 7967, 4033, 7011, 6579, 7940, 1033, 6239, 4202, 9957, 7707, 6034, 3904, 1815, 2584] SNP IDs counts: [9139, 3010, 14451, 1076, 12390, 16064, 11069, 10332, 3800, 902, 33890, 14571, 8040, 6933, 4961, 5977, 4226, 6273, 10238, 2397, 3292, 11157, 2042, 7967, 4033, 7011, 6579, 7940, 1033, 6239, 4202, 9957, 7707, 6034, 3904, 1815, 2584] Critical gap: 689798bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.51Mbp, 10.18Mbp, 19.11Mbp, 19.70Mbp, 27.06Mbp, 36.00Mbp, 42.37Mbp, 49.03Mbp, 51.22Mbp, 51.70Mbp, 70.98Mbp, 79.51Mbp, 84.01Mbp, 87.71Mbp, 90.38Mbp, 94.36Mbp, 96.71Mbp, 100.36Mbp, 105.82Mbp, 107.20Mbp, 108.92Mbp, 115.63Mbp, 116.71Mbp, 121.15Mbp, 123.27Mbp, 127.18Mbp, 130.73Mbp, 135.27Mbp, 135.82Mbp, 139.25Mbp, 141.86Mbp, 147.30Mbp, 151.70Mbp, 154.97Mbp, 157.22Mbp, 158.23Mbp, 160.04Mbp] 2025-01-31 09:47:45,780 DEBUG chr3 time: 265.0766686350107 s 2025-01-31 09:47:45,781 DEBUG Processing 885/1030 atomic regions from SNP 265331 to 265931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,930 DEBUG chr3: Fitting background model for 37 segments 2025-01-31 09:47:46,026 DEBUG Processing 848/1139 atomic regions from SNP 254252 to 254852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,046 DEBUG Processing 886/1030 atomic regions from SNP 265631 to 266231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,278 DEBUG Processing 849/1139 atomic regions from SNP 254552 to 255152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,310 DEBUG Processing 887/1030 atomic regions from SNP 265931 to 266531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,534 DEBUG Processing 850/1139 atomic regions from SNP 254852 to 255452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,582 DEBUG Processing 888/1030 atomic regions from SNP 266231 to 266831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,786 DEBUG Processing 851/1139 atomic regions from SNP 255152 to 255752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,853 DEBUG Processing 889/1030 atomic regions from SNP 266531 to 267131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,036 DEBUG Processing 852/1139 atomic regions from SNP 255452 to 256052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,123 DEBUG Processing 890/1030 atomic regions from SNP 266831 to 267431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,286 DEBUG Processing 853/1139 atomic regions from SNP 255752 to 256352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,387 DEBUG Processing 891/1030 atomic regions from SNP 267131 to 267731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,540 DEBUG Processing 854/1139 atomic regions from SNP 256052 to 256652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,660 DEBUG Processing 892/1030 atomic regions from SNP 267431 to 268031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,792 DEBUG Processing 855/1139 atomic regions from SNP 256352 to 256952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,936 DEBUG Processing 893/1030 atomic regions from SNP 267731 to 268331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,042 DEBUG Processing 856/1139 atomic regions from SNP 256652 to 257252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,203 DEBUG Processing 894/1030 atomic regions from SNP 268031 to 268631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,289 DEBUG Processing 857/1139 atomic regions from SNP 256952 to 257552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,466 DEBUG Processing 895/1030 atomic regions from SNP 268331 to 268931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,535 DEBUG Processing 858/1139 atomic regions from SNP 257252 to 257852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,727 DEBUG Processing 896/1030 atomic regions from SNP 268631 to 269231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,783 DEBUG Processing 859/1139 atomic regions from SNP 257552 to 258152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,009 DEBUG Processing 897/1030 atomic regions from SNP 268931 to 269531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,041 DEBUG Processing 860/1139 atomic regions from SNP 257852 to 258452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,295 DEBUG Processing 898/1030 atomic regions from SNP 269231 to 269831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,299 DEBUG Processing 861/1139 atomic regions from SNP 258152 to 258752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,558 DEBUG Processing 862/1139 atomic regions from SNP 258452 to 259052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,564 DEBUG Processing 899/1030 atomic regions from SNP 269531 to 270131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,811 DEBUG Processing 863/1139 atomic regions from SNP 258752 to 259352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,828 DEBUG Processing 900/1030 atomic regions from SNP 269831 to 270431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,061 DEBUG Processing 864/1139 atomic regions from SNP 259052 to 259652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,072 DEBUG Processing 901/1030 atomic regions from SNP 270131 to 270731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,155 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:47:50,156 DEBUG chr6: Signal quantile: 0.992. signal threshold: 18. Best RMSEA: 0.015 2025-01-31 09:47:50,335 DEBUG Processing 902/1030 atomic regions from SNP 270431 to 271031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,337 DEBUG Processing 865/1139 atomic regions from SNP 259352 to 259952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,610 DEBUG Processing 866/1139 atomic regions from SNP 259652 to 260252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,617 DEBUG Processing 903/1030 atomic regions from SNP 270731 to 271331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,876 DEBUG Processing 867/1139 atomic regions from SNP 259952 to 260552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,902 DEBUG Processing 904/1030 atomic regions from SNP 271031 to 271631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,134 DEBUG Processing 868/1139 atomic regions from SNP 260252 to 260852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,180 DEBUG Processing 905/1030 atomic regions from SNP 271331 to 271931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,398 DEBUG Processing 869/1139 atomic regions from SNP 260552 to 261152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,440 DEBUG Processing 906/1030 atomic regions from SNP 271631 to 272231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,688 DEBUG Processing 870/1139 atomic regions from SNP 260852 to 261452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,711 DEBUG Processing 907/1030 atomic regions from SNP 271931 to 272531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,968 DEBUG Processing 908/1030 atomic regions from SNP 272231 to 272831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,975 DEBUG Processing 871/1139 atomic regions from SNP 261152 to 261752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,226 DEBUG Processing 909/1030 atomic regions from SNP 272531 to 273131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,250 DEBUG Processing 872/1139 atomic regions from SNP 261452 to 262052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,500 DEBUG Processing 910/1030 atomic regions from SNP 272831 to 273431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,517 DEBUG Processing 873/1139 atomic regions from SNP 261752 to 262352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,597 DEBUG chr6 total SNP count: 259003 2025-01-31 09:47:52,597 DEBUG chr6 length: 149736546 2025-01-31 09:47:52,597 DEBUG ----------------------------------------- 2025-01-31 09:47:52,597 INFO Processing SNPs in chr6 2025-01-31 09:47:52,773 DEBUG Processing 911/1030 atomic regions from SNP 273131 to 273731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,791 DEBUG Processing 874/1139 atomic regions from SNP 262052 to 262652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,851 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 259003)] 2025-01-31 09:47:53,022 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:53,044 DEBUG Processing 912/1030 atomic regions from SNP 273431 to 274031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,054 DEBUG Processing 875/1139 atomic regions from SNP 262352 to 262952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,311 DEBUG Processing 876/1139 atomic regions from SNP 262652 to 263252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,323 DEBUG Processing 913/1030 atomic regions from SNP 273731 to 274331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,563 DEBUG Processing 877/1139 atomic regions from SNP 262952 to 263552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,594 DEBUG Processing 914/1030 atomic regions from SNP 274031 to 274631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,818 DEBUG Processing 878/1139 atomic regions from SNP 263252 to 263852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,858 DEBUG Processing 915/1030 atomic regions from SNP 274331 to 274931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,077 DEBUG Processing 879/1139 atomic regions from SNP 263552 to 264152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,122 DEBUG Processing 916/1030 atomic regions from SNP 274631 to 275231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,336 DEBUG Processing 880/1139 atomic regions from SNP 263852 to 264452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,392 DEBUG Processing 917/1030 atomic regions from SNP 274931 to 275531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,612 DEBUG Processing 881/1139 atomic regions from SNP 264152 to 264752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,663 DEBUG Processing 918/1030 atomic regions from SNP 275231 to 275831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,872 DEBUG Processing 882/1139 atomic regions from SNP 264452 to 265052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,930 DEBUG Processing 919/1030 atomic regions from SNP 275531 to 276131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,127 DEBUG Processing 883/1139 atomic regions from SNP 264752 to 265352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,197 DEBUG Processing 920/1030 atomic regions from SNP 275831 to 276431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,393 DEBUG Processing 884/1139 atomic regions from SNP 265052 to 265652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,466 DEBUG Processing 921/1030 atomic regions from SNP 276131 to 276731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,662 DEBUG Processing 885/1139 atomic regions from SNP 265352 to 265952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,739 DEBUG Processing 922/1030 atomic regions from SNP 276431 to 277031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,913 DEBUG Processing 886/1139 atomic regions from SNP 265652 to 266252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,004 DEBUG Processing 923/1030 atomic regions from SNP 276731 to 277331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,173 DEBUG Processing 887/1139 atomic regions from SNP 265952 to 266552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,264 DEBUG Processing 924/1030 atomic regions from SNP 277031 to 277631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,436 DEBUG Processing 888/1139 atomic regions from SNP 266252 to 266852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,522 DEBUG Processing 925/1030 atomic regions from SNP 277331 to 277931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,685 DEBUG Processing 889/1139 atomic regions from SNP 266552 to 267152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,789 DEBUG Processing 926/1030 atomic regions from SNP 277631 to 278231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,937 DEBUG Processing 890/1139 atomic regions from SNP 266852 to 267452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,063 DEBUG Processing 927/1030 atomic regions from SNP 277931 to 278531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,187 DEBUG Processing 891/1139 atomic regions from SNP 267152 to 267752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,335 DEBUG Processing 928/1030 atomic regions from SNP 278231 to 278831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,445 DEBUG Processing 892/1139 atomic regions from SNP 267452 to 268052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,611 DEBUG Processing 929/1030 atomic regions from SNP 278531 to 279131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,701 DEBUG Processing 893/1139 atomic regions from SNP 267752 to 268352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,880 DEBUG Processing 930/1030 atomic regions from SNP 278831 to 279431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,980 DEBUG Processing 894/1139 atomic regions from SNP 268052 to 268652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,130 DEBUG Processing 931/1030 atomic regions from SNP 279131 to 279731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,268 DEBUG Processing 895/1139 atomic regions from SNP 268352 to 268952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,383 DEBUG Processing 932/1030 atomic regions from SNP 279431 to 280031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,548 DEBUG Processing 896/1139 atomic regions from SNP 268652 to 269252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,630 DEBUG Processing 933/1030 atomic regions from SNP 279731 to 280331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,824 DEBUG Processing 897/1139 atomic regions from SNP 268952 to 269552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,874 DEBUG Processing 934/1030 atomic regions from SNP 280031 to 280631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,105 DEBUG Processing 898/1139 atomic regions from SNP 269252 to 269852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,122 DEBUG Processing 935/1030 atomic regions from SNP 280331 to 280931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,369 DEBUG Processing 936/1030 atomic regions from SNP 280631 to 281231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,389 DEBUG Processing 899/1139 atomic regions from SNP 269552 to 270152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,616 DEBUG Processing 937/1030 atomic regions from SNP 280931 to 281531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,671 DEBUG Processing 900/1139 atomic regions from SNP 269852 to 270452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,866 DEBUG Processing 938/1030 atomic regions from SNP 281231 to 281831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,967 DEBUG Processing 901/1139 atomic regions from SNP 270152 to 270752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,115 DEBUG Processing 939/1030 atomic regions from SNP 281531 to 282131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,240 DEBUG Processing 902/1139 atomic regions from SNP 270452 to 271052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,359 DEBUG Processing 940/1030 atomic regions from SNP 281831 to 282431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,511 DEBUG Processing 903/1139 atomic regions from SNP 270752 to 271352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,610 DEBUG Processing 941/1030 atomic regions from SNP 282131 to 282731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,795 DEBUG Processing 904/1139 atomic regions from SNP 271052 to 271652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,869 DEBUG Processing 942/1030 atomic regions from SNP 282431 to 283031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,078 DEBUG Processing 905/1139 atomic regions from SNP 271352 to 271952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,136 DEBUG Processing 943/1030 atomic regions from SNP 282731 to 283331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,355 DEBUG Processing 906/1139 atomic regions from SNP 271652 to 272252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,386 DEBUG Processing 944/1030 atomic regions from SNP 283031 to 283631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,630 DEBUG Processing 945/1030 atomic regions from SNP 283331 to 283931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,635 DEBUG Processing 907/1139 atomic regions from SNP 271952 to 272552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,875 DEBUG Processing 946/1030 atomic regions from SNP 283631 to 284231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,888 DEBUG Processing 908/1139 atomic regions from SNP 272252 to 272852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,121 DEBUG Processing 947/1030 atomic regions from SNP 283931 to 284531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,148 DEBUG Processing 909/1139 atomic regions from SNP 272552 to 273152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,367 DEBUG Processing 948/1030 atomic regions from SNP 284231 to 284831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,412 DEBUG Processing 910/1139 atomic regions from SNP 272852 to 273452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,612 DEBUG Processing 949/1030 atomic regions from SNP 284531 to 285131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,670 DEBUG Processing 911/1139 atomic regions from SNP 273152 to 273752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,858 DEBUG Processing 950/1030 atomic regions from SNP 284831 to 285431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,921 DEBUG Processing 912/1139 atomic regions from SNP 273452 to 274052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,100 DEBUG Processing 951/1030 atomic regions from SNP 285131 to 285731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,170 DEBUG Processing 913/1139 atomic regions from SNP 273752 to 274352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,344 DEBUG Processing 952/1030 atomic regions from SNP 285431 to 286031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,441 DEBUG Processing 914/1139 atomic regions from SNP 274052 to 274652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,587 DEBUG Processing 953/1030 atomic regions from SNP 285731 to 286331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,693 DEBUG Processing 915/1139 atomic regions from SNP 274352 to 274952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,827 DEBUG Processing 954/1030 atomic regions from SNP 286031 to 286631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,939 DEBUG Processing 916/1139 atomic regions from SNP 274652 to 275252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,068 DEBUG Processing 955/1030 atomic regions from SNP 286331 to 286931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,188 DEBUG Processing 917/1139 atomic regions from SNP 274952 to 275552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,335 DEBUG Processing 956/1030 atomic regions from SNP 286631 to 287231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,438 DEBUG Processing 918/1139 atomic regions from SNP 275252 to 275852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,595 DEBUG Processing 957/1030 atomic regions from SNP 286931 to 287531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,687 DEBUG Processing 919/1139 atomic regions from SNP 275552 to 276152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,857 DEBUG Processing 958/1030 atomic regions from SNP 287231 to 287831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,965 DEBUG Processing 920/1139 atomic regions from SNP 275852 to 276452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,126 DEBUG Processing 959/1030 atomic regions from SNP 287531 to 288131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,227 DEBUG Processing 921/1139 atomic regions from SNP 276152 to 276752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,398 DEBUG Processing 960/1030 atomic regions from SNP 287831 to 288431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,478 DEBUG Processing 922/1139 atomic regions from SNP 276452 to 277052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,667 DEBUG Processing 961/1030 atomic regions from SNP 288131 to 288731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,728 DEBUG Processing 923/1139 atomic regions from SNP 276752 to 277352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,930 DEBUG Processing 962/1030 atomic regions from SNP 288431 to 289031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,980 DEBUG Processing 924/1139 atomic regions from SNP 277052 to 277652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,194 DEBUG Processing 963/1030 atomic regions from SNP 288731 to 289331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,247 DEBUG Processing 925/1139 atomic regions from SNP 277352 to 277952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,438 DEBUG Processing 964/1030 atomic regions from SNP 289031 to 289631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,533 DEBUG Processing 926/1139 atomic regions from SNP 277652 to 278252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,698 DEBUG Processing 965/1030 atomic regions from SNP 289331 to 289931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,810 DEBUG Processing 927/1139 atomic regions from SNP 277952 to 278552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,964 DEBUG Processing 966/1030 atomic regions from SNP 289631 to 290231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,065 DEBUG Processing 928/1139 atomic regions from SNP 278252 to 278852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,240 DEBUG Processing 967/1030 atomic regions from SNP 289931 to 290531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,326 DEBUG Processing 929/1139 atomic regions from SNP 278552 to 279152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,523 DEBUG Processing 968/1030 atomic regions from SNP 290231 to 290831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,609 DEBUG Processing 930/1139 atomic regions from SNP 278852 to 279452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,800 DEBUG Processing 969/1030 atomic regions from SNP 290531 to 291131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,893 DEBUG Processing 931/1139 atomic regions from SNP 279152 to 279752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,076 DEBUG Processing 970/1030 atomic regions from SNP 290831 to 291431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,181 DEBUG Processing 932/1139 atomic regions from SNP 279452 to 280052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,353 DEBUG Processing 971/1030 atomic regions from SNP 291131 to 291731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,467 DEBUG Processing 933/1139 atomic regions from SNP 279752 to 280352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,619 DEBUG Processing 972/1030 atomic regions from SNP 291431 to 292031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,723 DEBUG Processing 934/1139 atomic regions from SNP 280052 to 280652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,880 DEBUG Processing 973/1030 atomic regions from SNP 291731 to 292331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,976 DEBUG Processing 935/1139 atomic regions from SNP 280352 to 280952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,159 DEBUG Processing 974/1030 atomic regions from SNP 292031 to 292631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,254 DEBUG Processing 936/1139 atomic regions from SNP 280652 to 281252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,441 DEBUG Processing 975/1030 atomic regions from SNP 292331 to 292931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,531 DEBUG Processing 937/1139 atomic regions from SNP 280952 to 281552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,710 DEBUG Processing 976/1030 atomic regions from SNP 292631 to 293231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,797 DEBUG Processing 938/1139 atomic regions from SNP 281252 to 281852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,968 DEBUG Processing 977/1030 atomic regions from SNP 292931 to 293531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,056 DEBUG Processing 939/1139 atomic regions from SNP 281552 to 282152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,230 DEBUG Processing 978/1030 atomic regions from SNP 293231 to 293831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,318 DEBUG Processing 940/1139 atomic regions from SNP 281852 to 282452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,503 DEBUG Processing 979/1030 atomic regions from SNP 293531 to 294131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,597 DEBUG Processing 941/1139 atomic regions from SNP 282152 to 282752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,779 DEBUG Processing 980/1030 atomic regions from SNP 293831 to 294431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,869 DEBUG Processing 942/1139 atomic regions from SNP 282452 to 283052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,056 DEBUG Processing 981/1030 atomic regions from SNP 294131 to 294731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,120 DEBUG Processing 943/1139 atomic regions from SNP 282752 to 283352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,333 DEBUG Processing 982/1030 atomic regions from SNP 294431 to 295031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,369 DEBUG Processing 944/1139 atomic regions from SNP 283052 to 283652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,610 DEBUG Processing 983/1030 atomic regions from SNP 294731 to 295331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,620 DEBUG Processing 945/1139 atomic regions from SNP 283352 to 283952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,873 DEBUG Processing 946/1139 atomic regions from SNP 283652 to 284252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,890 DEBUG Processing 984/1030 atomic regions from SNP 295031 to 295631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,124 DEBUG Processing 947/1139 atomic regions from SNP 283952 to 284552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,170 DEBUG Processing 985/1030 atomic regions from SNP 295331 to 295931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,375 DEBUG Processing 948/1139 atomic regions from SNP 284252 to 284852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,448 DEBUG Processing 986/1030 atomic regions from SNP 295631 to 296231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,628 DEBUG Processing 949/1139 atomic regions from SNP 284552 to 285152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,730 DEBUG Processing 987/1030 atomic regions from SNP 295931 to 296531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,887 DEBUG Processing 950/1139 atomic regions from SNP 284852 to 285452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,009 DEBUG Processing 988/1030 atomic regions from SNP 296231 to 296831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,160 DEBUG Processing 951/1139 atomic regions from SNP 285152 to 285752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,283 DEBUG Processing 989/1030 atomic regions from SNP 296531 to 297131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,424 DEBUG Processing 952/1139 atomic regions from SNP 285452 to 286052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,530 DEBUG Processing 990/1030 atomic regions from SNP 296831 to 297431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,686 DEBUG Processing 953/1139 atomic regions from SNP 285752 to 286352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,775 DEBUG Processing 991/1030 atomic regions from SNP 297131 to 297731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,942 DEBUG Processing 954/1139 atomic regions from SNP 286052 to 286652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,021 DEBUG Processing 992/1030 atomic regions from SNP 297431 to 298031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,211 DEBUG Processing 955/1139 atomic regions from SNP 286352 to 286952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,267 DEBUG Processing 993/1030 atomic regions from SNP 297731 to 298331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,491 DEBUG Processing 956/1139 atomic regions from SNP 286652 to 287252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,515 DEBUG Processing 994/1030 atomic regions from SNP 298031 to 298631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,763 DEBUG Processing 995/1030 atomic regions from SNP 298331 to 298931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,777 DEBUG Processing 957/1139 atomic regions from SNP 286952 to 287552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,012 DEBUG Processing 996/1030 atomic regions from SNP 298631 to 299231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,053 DEBUG Processing 958/1139 atomic regions from SNP 287252 to 287852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,256 DEBUG Processing 997/1030 atomic regions from SNP 298931 to 299531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,333 DEBUG Processing 959/1139 atomic regions from SNP 287552 to 288152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,499 DEBUG Processing 998/1030 atomic regions from SNP 299231 to 299831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,624 DEBUG Processing 960/1139 atomic regions from SNP 287852 to 288452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,740 DEBUG Processing 999/1030 atomic regions from SNP 299531 to 300131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,912 DEBUG Processing 961/1139 atomic regions from SNP 288152 to 288752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,983 DEBUG Processing 1000/1030 atomic regions from SNP 299831 to 300431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,194 DEBUG Processing 962/1139 atomic regions from SNP 288452 to 289052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,258 DEBUG Processing 1001/1030 atomic regions from SNP 300131 to 300731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,469 DEBUG Processing 963/1139 atomic regions from SNP 288752 to 289352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,537 DEBUG Processing 1002/1030 atomic regions from SNP 300431 to 301031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,735 DEBUG Processing 964/1139 atomic regions from SNP 289052 to 289652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,791 DEBUG Processing 1003/1030 atomic regions from SNP 300731 to 301331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,984 DEBUG Processing 965/1139 atomic regions from SNP 289352 to 289952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,055 DEBUG Processing 1004/1030 atomic regions from SNP 301031 to 301631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,234 DEBUG Processing 966/1139 atomic regions from SNP 289652 to 290252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,300 DEBUG Processing 1005/1030 atomic regions from SNP 301331 to 301931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,485 DEBUG Processing 967/1139 atomic regions from SNP 289952 to 290552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,547 DEBUG Processing 1006/1030 atomic regions from SNP 301631 to 302231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,740 DEBUG Processing 968/1139 atomic regions from SNP 290252 to 290852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,790 DEBUG Processing 1007/1030 atomic regions from SNP 301931 to 302531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,025 DEBUG Processing 969/1139 atomic regions from SNP 290552 to 291152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,033 DEBUG Processing 1008/1030 atomic regions from SNP 302231 to 302831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,274 DEBUG Processing 1009/1030 atomic regions from SNP 302531 to 303131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,303 DEBUG Processing 970/1139 atomic regions from SNP 290852 to 291452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,513 DEBUG Processing 1010/1030 atomic regions from SNP 302831 to 303431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,555 DEBUG Processing 971/1139 atomic regions from SNP 291152 to 291752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,754 DEBUG Processing 1011/1030 atomic regions from SNP 303131 to 303731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,809 DEBUG Processing 972/1139 atomic regions from SNP 291452 to 292052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,996 DEBUG Processing 1012/1030 atomic regions from SNP 303431 to 304031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,059 DEBUG Processing 973/1139 atomic regions from SNP 291752 to 292352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,239 DEBUG Processing 1013/1030 atomic regions from SNP 303731 to 304331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,307 DEBUG Processing 974/1139 atomic regions from SNP 292052 to 292652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,485 DEBUG Processing 1014/1030 atomic regions from SNP 304031 to 304631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,572 DEBUG Processing 975/1139 atomic regions from SNP 292352 to 292952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,755 DEBUG Processing 1015/1030 atomic regions from SNP 304331 to 304931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,850 DEBUG Processing 976/1139 atomic regions from SNP 292652 to 293252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,010 DEBUG Processing 1016/1030 atomic regions from SNP 304631 to 305231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,113 DEBUG Processing 977/1139 atomic regions from SNP 292952 to 293552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,250 DEBUG Processing 1017/1030 atomic regions from SNP 304931 to 305531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,361 DEBUG Processing 978/1139 atomic regions from SNP 293252 to 293852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,492 DEBUG Processing 1018/1030 atomic regions from SNP 305231 to 305831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,606 DEBUG Processing 979/1139 atomic regions from SNP 293552 to 294152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,761 DEBUG Processing 1019/1030 atomic regions from SNP 305531 to 306131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,854 DEBUG Processing 980/1139 atomic regions from SNP 293852 to 294452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,018 DEBUG Processing 1020/1030 atomic regions from SNP 305831 to 306431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,101 DEBUG Processing 981/1139 atomic regions from SNP 294152 to 294752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,257 DEBUG Processing 1021/1030 atomic regions from SNP 306131 to 306731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,350 DEBUG Processing 982/1139 atomic regions from SNP 294452 to 295052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,496 DEBUG Processing 1022/1030 atomic regions from SNP 306431 to 307031 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,597 DEBUG Processing 983/1139 atomic regions from SNP 294752 to 295352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,744 DEBUG Processing 1023/1030 atomic regions from SNP 306731 to 307331 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,843 DEBUG Processing 984/1139 atomic regions from SNP 295052 to 295652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,995 DEBUG Processing 1024/1030 atomic regions from SNP 307031 to 307631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,089 DEBUG Processing 985/1139 atomic regions from SNP 295352 to 295952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,234 DEBUG Processing 1025/1030 atomic regions from SNP 307331 to 307931 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,345 DEBUG Processing 986/1139 atomic regions from SNP 295652 to 296252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,476 DEBUG Processing 1026/1030 atomic regions from SNP 307631 to 308231 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,615 DEBUG Processing 987/1139 atomic regions from SNP 295952 to 296552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,732 DEBUG Processing 1027/1030 atomic regions from SNP 307931 to 308531 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,868 DEBUG Processing 988/1139 atomic regions from SNP 296252 to 296852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,999 DEBUG Processing 1028/1030 atomic regions from SNP 308231 to 308831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,122 DEBUG Processing 989/1139 atomic regions from SNP 296552 to 297152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,257 DEBUG Processing 1029/1030 atomic regions from SNP 308531 to 309131 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,389 DEBUG Processing 990/1139 atomic regions from SNP 296852 to 297452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,408 DEBUG Segmenting atomic regions: 2025-01-31 09:48:23,500 DEBUG Processing 1030/1030 atomic regions from SNP 308831 to 309431 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,520 DEBUG Processing 1/862 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,615 DEBUG Unique SNPs positions in subchromosome 1: 309432 2025-01-31 09:48:23,664 DEBUG Processing 991/1139 atomic regions from SNP 297152 to 297752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,732 DEBUG Processing 2/862 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,940 DEBUG Processing 3/862 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,948 DEBUG Processing 992/1139 atomic regions from SNP 297452 to 298052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,150 DEBUG Processing 4/862 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,233 DEBUG Processing 993/1139 atomic regions from SNP 297752 to 298352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,359 DEBUG Processing 5/862 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,518 DEBUG Processing 994/1139 atomic regions from SNP 298052 to 298652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,568 DEBUG Processing 6/862 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,776 DEBUG Processing 7/862 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,802 DEBUG Processing 995/1139 atomic regions from SNP 298352 to 298952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,986 DEBUG Processing 8/862 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,064 DEBUG Processing 996/1139 atomic regions from SNP 298652 to 299252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,194 DEBUG Processing 9/862 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,313 DEBUG Processing 997/1139 atomic regions from SNP 298952 to 299552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,417 DEBUG Processing 10/862 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,579 DEBUG Processing 998/1139 atomic regions from SNP 299252 to 299852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,629 DEBUG Processing 11/862 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,847 DEBUG Processing 12/862 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,863 DEBUG Processing 999/1139 atomic regions from SNP 299552 to 300152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,073 DEBUG Processing 13/862 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,148 DEBUG Processing 1000/1139 atomic regions from SNP 299852 to 300452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,304 DEBUG Processing 14/862 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,417 DEBUG Processing 1001/1139 atomic regions from SNP 300152 to 300752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,511 DEBUG Processing 15/862 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,669 DEBUG Processing 1002/1139 atomic regions from SNP 300452 to 301052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,719 DEBUG Processing 16/862 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,921 DEBUG Processing 1003/1139 atomic regions from SNP 300752 to 301352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,928 DEBUG Processing 17/862 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,138 DEBUG Processing 18/862 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,173 DEBUG Processing 1004/1139 atomic regions from SNP 301052 to 301652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,349 DEBUG Processing 19/862 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,426 DEBUG Processing 1005/1139 atomic regions from SNP 301352 to 301952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,560 DEBUG Processing 20/862 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,676 DEBUG Processing 1006/1139 atomic regions from SNP 301652 to 302252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,770 DEBUG Processing 21/862 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,923 DEBUG Processing 1007/1139 atomic regions from SNP 301952 to 302552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,980 DEBUG Processing 22/862 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,171 DEBUG Processing 1008/1139 atomic regions from SNP 302252 to 302852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,189 DEBUG Processing 23/862 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,401 DEBUG Processing 24/862 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,425 DEBUG Processing 1009/1139 atomic regions from SNP 302552 to 303152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,612 DEBUG Processing 25/862 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,678 DEBUG Processing 1010/1139 atomic regions from SNP 302852 to 303452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,821 DEBUG Processing 26/862 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,928 DEBUG Processing 1011/1139 atomic regions from SNP 303152 to 303752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,042 DEBUG Processing 27/862 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,175 DEBUG Processing 1012/1139 atomic regions from SNP 303452 to 304052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,269 DEBUG Processing 28/862 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,423 DEBUG Processing 1013/1139 atomic regions from SNP 303752 to 304352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,478 DEBUG Processing 29/862 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,675 DEBUG Processing 1014/1139 atomic regions from SNP 304052 to 304652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,703 DEBUG Processing 30/862 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,927 DEBUG Processing 31/862 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,929 DEBUG Processing 1015/1139 atomic regions from SNP 304352 to 304952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,162 DEBUG Processing 32/862 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,182 DEBUG Processing 1016/1139 atomic regions from SNP 304652 to 305252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,383 DEBUG Processing 33/862 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,435 DEBUG Processing 1017/1139 atomic regions from SNP 304952 to 305552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,594 DEBUG Processing 34/862 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,685 DEBUG Processing 1018/1139 atomic regions from SNP 305252 to 305852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,803 DEBUG Processing 35/862 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,934 DEBUG Processing 1019/1139 atomic regions from SNP 305552 to 306152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,011 DEBUG Processing 36/862 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,186 DEBUG Processing 1020/1139 atomic regions from SNP 305852 to 306452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,220 DEBUG Processing 37/862 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,433 DEBUG Processing 38/862 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,439 DEBUG Processing 1021/1139 atomic regions from SNP 306152 to 306752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,646 DEBUG Processing 39/862 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,694 DEBUG Processing 1022/1139 atomic regions from SNP 306452 to 307052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,858 DEBUG Processing 40/862 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,949 DEBUG Processing 1023/1139 atomic regions from SNP 306752 to 307352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,068 DEBUG Processing 41/862 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,199 DEBUG Processing 1024/1139 atomic regions from SNP 307052 to 307652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,278 DEBUG Processing 42/862 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,450 DEBUG Processing 1025/1139 atomic regions from SNP 307352 to 307952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,489 DEBUG Processing 43/862 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,701 DEBUG Processing 44/862 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,721 DEBUG Processing 1026/1139 atomic regions from SNP 307652 to 308252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,914 DEBUG Processing 45/862 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,998 DEBUG Processing 1027/1139 atomic regions from SNP 307952 to 308552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,124 DEBUG Processing 46/862 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,252 DEBUG Processing 1028/1139 atomic regions from SNP 308252 to 308852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,335 DEBUG Processing 47/862 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,504 DEBUG Processing 1029/1139 atomic regions from SNP 308552 to 309152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,546 DEBUG Processing 48/862 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,759 DEBUG Processing 1030/1139 atomic regions from SNP 308852 to 309452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,759 DEBUG Processing 49/862 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,973 DEBUG Processing 50/862 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,018 DEBUG Processing 1031/1139 atomic regions from SNP 309152 to 309752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,186 DEBUG Processing 51/862 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,277 DEBUG Processing 1032/1139 atomic regions from SNP 309452 to 310052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,398 DEBUG Processing 52/862 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,531 DEBUG Processing 1033/1139 atomic regions from SNP 309752 to 310352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,608 DEBUG Processing 53/862 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,787 DEBUG Processing 1034/1139 atomic regions from SNP 310052 to 310652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,818 DEBUG Processing 54/862 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,028 DEBUG Processing 55/862 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,061 DEBUG Processing 1035/1139 atomic regions from SNP 310352 to 310952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,238 DEBUG Processing 56/862 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,340 DEBUG Processing 1036/1139 atomic regions from SNP 310652 to 311252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,446 DEBUG Processing 57/862 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,608 DEBUG Processing 1037/1139 atomic regions from SNP 310952 to 311552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,656 DEBUG Processing 58/862 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,866 DEBUG Processing 1038/1139 atomic regions from SNP 311252 to 311852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,867 DEBUG Processing 59/862 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,081 DEBUG Processing 60/862 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,130 DEBUG Processing 1039/1139 atomic regions from SNP 311552 to 312152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,291 DEBUG Processing 61/862 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,393 DEBUG Processing 1040/1139 atomic regions from SNP 311852 to 312452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,499 DEBUG Processing 62/862 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,659 DEBUG Processing 1041/1139 atomic regions from SNP 312152 to 312752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,708 DEBUG Processing 63/862 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,919 DEBUG Processing 1042/1139 atomic regions from SNP 312452 to 313052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,921 DEBUG Processing 64/862 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,133 DEBUG Processing 65/862 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,202 DEBUG Processing 1043/1139 atomic regions from SNP 312752 to 313352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,344 DEBUG Processing 66/862 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,490 DEBUG Processing 1044/1139 atomic regions from SNP 313052 to 313652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,553 DEBUG Processing 67/862 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,764 DEBUG Processing 68/862 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,777 DEBUG Processing 1045/1139 atomic regions from SNP 313352 to 313952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,975 DEBUG Processing 69/862 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,046 DEBUG Processing 1046/1139 atomic regions from SNP 313652 to 314252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,184 DEBUG Processing 70/862 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,324 DEBUG Processing 1047/1139 atomic regions from SNP 313952 to 314552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,391 DEBUG Processing 71/862 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,601 DEBUG Processing 72/862 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,609 DEBUG Processing 1048/1139 atomic regions from SNP 314252 to 314852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,813 DEBUG Processing 73/862 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,896 DEBUG Processing 1049/1139 atomic regions from SNP 314552 to 315152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,021 DEBUG Processing 74/862 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,177 DEBUG Processing 1050/1139 atomic regions from SNP 314852 to 315452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,229 DEBUG Processing 75/862 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,441 DEBUG Processing 76/862 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,466 DEBUG Processing 1051/1139 atomic regions from SNP 315152 to 315752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,653 DEBUG Processing 77/862 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,753 DEBUG Processing 1052/1139 atomic regions from SNP 315452 to 316052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,865 DEBUG Processing 78/862 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,038 DEBUG Processing 1053/1139 atomic regions from SNP 315752 to 316352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,075 DEBUG Processing 79/862 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,285 DEBUG Processing 80/862 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,327 DEBUG Processing 1054/1139 atomic regions from SNP 316052 to 316652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,497 DEBUG Processing 81/862 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,611 DEBUG Processing 1055/1139 atomic regions from SNP 316352 to 316952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,707 DEBUG Processing 82/862 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,873 DEBUG Processing 1056/1139 atomic regions from SNP 316652 to 317252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,918 DEBUG Processing 83/862 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,139 DEBUG Processing 1057/1139 atomic regions from SNP 316952 to 317552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,157 DEBUG Processing 84/862 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,380 DEBUG Processing 85/862 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,413 DEBUG Processing 1058/1139 atomic regions from SNP 317252 to 317852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,590 DEBUG Processing 86/862 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,683 DEBUG Processing 1059/1139 atomic regions from SNP 317552 to 318152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,800 DEBUG Processing 87/862 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,959 DEBUG Processing 1060/1139 atomic regions from SNP 317852 to 318452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,009 DEBUG Processing 88/862 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,216 DEBUG Processing 89/862 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,233 DEBUG Processing 1061/1139 atomic regions from SNP 318152 to 318752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,425 DEBUG Processing 90/862 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,495 DEBUG Processing 1062/1139 atomic regions from SNP 318452 to 319052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,634 DEBUG Processing 91/862 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,747 DEBUG Processing 1063/1139 atomic regions from SNP 318752 to 319352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,841 DEBUG Processing 92/862 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,010 DEBUG Processing 1064/1139 atomic regions from SNP 319052 to 319652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,048 DEBUG Processing 93/862 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,257 DEBUG Processing 94/862 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,278 DEBUG Processing 1065/1139 atomic regions from SNP 319352 to 319952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,465 DEBUG Processing 95/862 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,548 DEBUG Processing 1066/1139 atomic regions from SNP 319652 to 320252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,670 DEBUG Processing 96/862 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,822 DEBUG Processing 1067/1139 atomic regions from SNP 319952 to 320552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,874 DEBUG Processing 97/862 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,070 DEBUG Processing 1068/1139 atomic regions from SNP 320252 to 320852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,081 DEBUG Processing 98/862 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,290 DEBUG Processing 99/862 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,320 DEBUG Processing 1069/1139 atomic regions from SNP 320552 to 321152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,498 DEBUG Processing 100/862 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,568 DEBUG Processing 1070/1139 atomic regions from SNP 320852 to 321452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,708 DEBUG Processing 101/862 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,817 DEBUG Processing 1071/1139 atomic regions from SNP 321152 to 321752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,917 DEBUG Processing 102/862 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,063 DEBUG Processing 1072/1139 atomic regions from SNP 321452 to 322052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,125 DEBUG Processing 103/862 atomic regions from SNP 30702 to 31302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,310 DEBUG Processing 1073/1139 atomic regions from SNP 321752 to 322352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,332 DEBUG Processing 104/862 atomic regions from SNP 31002 to 31602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,544 DEBUG Processing 105/862 atomic regions from SNP 31302 to 31902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,575 DEBUG Processing 1074/1139 atomic regions from SNP 322052 to 322652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,755 DEBUG Processing 106/862 atomic regions from SNP 31602 to 32202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,863 DEBUG Processing 1075/1139 atomic regions from SNP 322352 to 322952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,964 DEBUG Processing 107/862 atomic regions from SNP 31902 to 32502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,144 DEBUG Processing 1076/1139 atomic regions from SNP 322652 to 323252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,173 DEBUG Processing 108/862 atomic regions from SNP 32202 to 32802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,386 DEBUG Processing 109/862 atomic regions from SNP 32502 to 33102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,415 DEBUG Processing 1077/1139 atomic regions from SNP 322952 to 323552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,598 DEBUG Processing 110/862 atomic regions from SNP 32802 to 33402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,701 DEBUG Processing 1078/1139 atomic regions from SNP 323252 to 323852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,807 DEBUG Processing 111/862 atomic regions from SNP 33102 to 33702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,988 DEBUG Processing 1079/1139 atomic regions from SNP 323552 to 324152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,016 DEBUG Processing 112/862 atomic regions from SNP 33402 to 34002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,226 DEBUG Processing 113/862 atomic regions from SNP 33702 to 34302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,268 DEBUG Processing 1080/1139 atomic regions from SNP 323852 to 324452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,436 DEBUG Processing 114/862 atomic regions from SNP 34002 to 34602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,533 DEBUG Processing 1081/1139 atomic regions from SNP 324152 to 324752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,646 DEBUG Processing 115/862 atomic regions from SNP 34302 to 34902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,787 DEBUG Processing 1082/1139 atomic regions from SNP 324452 to 325052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,854 DEBUG Processing 116/862 atomic regions from SNP 34602 to 35202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,038 DEBUG Processing 1083/1139 atomic regions from SNP 324752 to 325352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,065 DEBUG Processing 117/862 atomic regions from SNP 34902 to 35502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,278 DEBUG Processing 118/862 atomic regions from SNP 35202 to 35802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,288 DEBUG Processing 1084/1139 atomic regions from SNP 325052 to 325652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,492 DEBUG Processing 119/862 atomic regions from SNP 35502 to 36102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,544 DEBUG Processing 1085/1139 atomic regions from SNP 325352 to 325952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,702 DEBUG Processing 120/862 atomic regions from SNP 35802 to 36402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,796 DEBUG Processing 1086/1139 atomic regions from SNP 325652 to 326252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,909 DEBUG Processing 121/862 atomic regions from SNP 36102 to 36702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,046 DEBUG Processing 1087/1139 atomic regions from SNP 325952 to 326552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,116 DEBUG Processing 122/862 atomic regions from SNP 36402 to 37002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,300 DEBUG Processing 1088/1139 atomic regions from SNP 326252 to 326852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,326 DEBUG Processing 123/862 atomic regions from SNP 36702 to 37302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,535 DEBUG Processing 124/862 atomic regions from SNP 37002 to 37602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,552 DEBUG Processing 1089/1139 atomic regions from SNP 326552 to 327152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,746 DEBUG Processing 125/862 atomic regions from SNP 37302 to 37902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,804 DEBUG Processing 1090/1139 atomic regions from SNP 326852 to 327452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,954 DEBUG Processing 126/862 atomic regions from SNP 37602 to 38202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,055 DEBUG Processing 1091/1139 atomic regions from SNP 327152 to 327752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,159 DEBUG Processing 127/862 atomic regions from SNP 37902 to 38502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,308 DEBUG Processing 1092/1139 atomic regions from SNP 327452 to 328052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,366 DEBUG Processing 128/862 atomic regions from SNP 38202 to 38802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,562 DEBUG Processing 1093/1139 atomic regions from SNP 327752 to 328352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,577 DEBUG Processing 129/862 atomic regions from SNP 38502 to 39102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,789 DEBUG Processing 130/862 atomic regions from SNP 38802 to 39402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,817 DEBUG Processing 1094/1139 atomic regions from SNP 328052 to 328652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,000 DEBUG Processing 131/862 atomic regions from SNP 39102 to 39702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,068 DEBUG Processing 1095/1139 atomic regions from SNP 328352 to 328952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,209 DEBUG Processing 132/862 atomic regions from SNP 39402 to 40002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,317 DEBUG Processing 1096/1139 atomic regions from SNP 328652 to 329252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,418 DEBUG Processing 133/862 atomic regions from SNP 39702 to 40302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,567 DEBUG Processing 1097/1139 atomic regions from SNP 328952 to 329552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,626 DEBUG Processing 134/862 atomic regions from SNP 40002 to 40602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,823 DEBUG Processing 1098/1139 atomic regions from SNP 329252 to 329852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,838 DEBUG Processing 135/862 atomic regions from SNP 40302 to 40902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,053 DEBUG Processing 136/862 atomic regions from SNP 40602 to 41202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,081 DEBUG Processing 1099/1139 atomic regions from SNP 329552 to 330152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,266 DEBUG Processing 137/862 atomic regions from SNP 40902 to 41502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,334 DEBUG Processing 1100/1139 atomic regions from SNP 329852 to 330452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,476 DEBUG Processing 138/862 atomic regions from SNP 41202 to 41802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,597 DEBUG Processing 1101/1139 atomic regions from SNP 330152 to 330752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,684 DEBUG Processing 139/862 atomic regions from SNP 41502 to 42102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,864 DEBUG Processing 1102/1139 atomic regions from SNP 330452 to 331052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,893 DEBUG Processing 140/862 atomic regions from SNP 41802 to 42402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,103 DEBUG Processing 141/862 atomic regions from SNP 42102 to 42702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,121 DEBUG Processing 1103/1139 atomic regions from SNP 330752 to 331352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,316 DEBUG Processing 142/862 atomic regions from SNP 42402 to 43002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,375 DEBUG Processing 1104/1139 atomic regions from SNP 331052 to 331652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,527 DEBUG Processing 143/862 atomic regions from SNP 42702 to 43302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,631 DEBUG Processing 1105/1139 atomic regions from SNP 331352 to 331952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,738 DEBUG Processing 144/862 atomic regions from SNP 43002 to 43602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,910 DEBUG Processing 1106/1139 atomic regions from SNP 331652 to 332252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,966 DEBUG Processing 145/862 atomic regions from SNP 43302 to 43902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,193 DEBUG Processing 1107/1139 atomic regions from SNP 331952 to 332552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,201 DEBUG Processing 146/862 atomic regions from SNP 43602 to 44202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,432 DEBUG Processing 147/862 atomic regions from SNP 43902 to 44502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,465 DEBUG Processing 1108/1139 atomic regions from SNP 332252 to 332852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,664 DEBUG Processing 148/862 atomic regions from SNP 44202 to 44802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,719 DEBUG Processing 1109/1139 atomic regions from SNP 332552 to 333152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,894 DEBUG Processing 149/862 atomic regions from SNP 44502 to 45102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,974 DEBUG Processing 1110/1139 atomic regions from SNP 332852 to 333452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,133 DEBUG Processing 150/862 atomic regions from SNP 44802 to 45402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,228 DEBUG Processing 1111/1139 atomic regions from SNP 333152 to 333752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,377 DEBUG Processing 151/862 atomic regions from SNP 45102 to 45702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,489 DEBUG Processing 1112/1139 atomic regions from SNP 333452 to 334052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,618 DEBUG Processing 152/862 atomic regions from SNP 45402 to 46002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,764 DEBUG Processing 1113/1139 atomic regions from SNP 333752 to 334352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,851 DEBUG Processing 153/862 atomic regions from SNP 45702 to 46302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,053 DEBUG Processing 1114/1139 atomic regions from SNP 334052 to 334652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,092 DEBUG Processing 154/862 atomic regions from SNP 46002 to 46602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,327 DEBUG Processing 155/862 atomic regions from SNP 46302 to 46902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,344 DEBUG Processing 1115/1139 atomic regions from SNP 334352 to 334952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,571 DEBUG Processing 156/862 atomic regions from SNP 46602 to 47202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,633 DEBUG Processing 1116/1139 atomic regions from SNP 334652 to 335252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,816 DEBUG Processing 157/862 atomic regions from SNP 46902 to 47502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,916 DEBUG Processing 1117/1139 atomic regions from SNP 334952 to 335552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,064 DEBUG Processing 158/862 atomic regions from SNP 47202 to 47802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,201 DEBUG Processing 1118/1139 atomic regions from SNP 335252 to 335852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,295 DEBUG Processing 159/862 atomic regions from SNP 47502 to 48102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,479 DEBUG Processing 1119/1139 atomic regions from SNP 335552 to 336152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,529 DEBUG Processing 160/862 atomic regions from SNP 47802 to 48402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,746 DEBUG Processing 161/862 atomic regions from SNP 48102 to 48702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,769 DEBUG Processing 1120/1139 atomic regions from SNP 335852 to 336452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,984 DEBUG Processing 162/862 atomic regions from SNP 48402 to 49002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,061 DEBUG Processing 1121/1139 atomic regions from SNP 336152 to 336752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,228 DEBUG Processing 163/862 atomic regions from SNP 48702 to 49302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,338 DEBUG Processing 1122/1139 atomic regions from SNP 336452 to 337052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,446 DEBUG Processing 164/862 atomic regions from SNP 49002 to 49602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,597 DEBUG Processing 1123/1139 atomic regions from SNP 336752 to 337352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,682 DEBUG Processing 165/862 atomic regions from SNP 49302 to 49902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,857 DEBUG Processing 1124/1139 atomic regions from SNP 337052 to 337652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,918 DEBUG Processing 166/862 atomic regions from SNP 49602 to 50202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,123 DEBUG Processing 1125/1139 atomic regions from SNP 337352 to 337952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,132 DEBUG Processing 167/862 atomic regions from SNP 49902 to 50502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,346 DEBUG Processing 168/862 atomic regions from SNP 50202 to 50802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,379 DEBUG Processing 1126/1139 atomic regions from SNP 337652 to 338252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,563 DEBUG Processing 169/862 atomic regions from SNP 50502 to 51102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,660 DEBUG Processing 1127/1139 atomic regions from SNP 337952 to 338552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,779 DEBUG Processing 170/862 atomic regions from SNP 50802 to 51402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,928 DEBUG Processing 1128/1139 atomic regions from SNP 338252 to 338852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,004 DEBUG Processing 171/862 atomic regions from SNP 51102 to 51702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,187 DEBUG Processing 1129/1139 atomic regions from SNP 338552 to 339152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,226 DEBUG Processing 172/862 atomic regions from SNP 51402 to 52002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,443 DEBUG Processing 173/862 atomic regions from SNP 51702 to 52302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,453 DEBUG Processing 1130/1139 atomic regions from SNP 338852 to 339452 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,662 DEBUG Processing 174/862 atomic regions from SNP 52002 to 52602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,717 DEBUG Processing 1131/1139 atomic regions from SNP 339152 to 339752 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,880 DEBUG Processing 175/862 atomic regions from SNP 52302 to 52902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,973 DEBUG Processing 1132/1139 atomic regions from SNP 339452 to 340052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,095 DEBUG Processing 176/862 atomic regions from SNP 52602 to 53202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,227 DEBUG Processing 1133/1139 atomic regions from SNP 339752 to 340352 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,307 DEBUG Processing 177/862 atomic regions from SNP 52902 to 53502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,483 DEBUG Processing 1134/1139 atomic regions from SNP 340052 to 340652 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,521 DEBUG Processing 178/862 atomic regions from SNP 53202 to 53802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,739 DEBUG Processing 179/862 atomic regions from SNP 53502 to 54102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,741 DEBUG Processing 1135/1139 atomic regions from SNP 340352 to 340952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,958 DEBUG Processing 180/862 atomic regions from SNP 53802 to 54402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,017 DEBUG Processing 1136/1139 atomic regions from SNP 340652 to 341252 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,182 DEBUG Processing 181/862 atomic regions from SNP 54102 to 54702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,300 DEBUG Processing 1137/1139 atomic regions from SNP 340952 to 341552 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,408 DEBUG Processing 182/862 atomic regions from SNP 54402 to 55002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,566 DEBUG Processing 1138/1139 atomic regions from SNP 341252 to 341852 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,642 DEBUG Processing 183/862 atomic regions from SNP 54702 to 55302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,844 DEBUG Processing 1139/1139 atomic regions from SNP 341552 to 342152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,868 DEBUG Processing 184/862 atomic regions from SNP 55002 to 55602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,967 DEBUG Unique SNPs positions in subchromosome 1: 342153 2025-01-31 09:49:03,099 DEBUG Processing 185/862 atomic regions from SNP 55302 to 55902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,338 DEBUG Processing 186/862 atomic regions from SNP 55602 to 56202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,568 DEBUG Processing 187/862 atomic regions from SNP 55902 to 56502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,804 DEBUG Processing 188/862 atomic regions from SNP 56202 to 56802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,033 DEBUG Processing 189/862 atomic regions from SNP 56502 to 57102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,242 DEBUG Processing 190/862 atomic regions from SNP 56802 to 57402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,454 DEBUG Processing 191/862 atomic regions from SNP 57102 to 57702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,667 DEBUG Processing 192/862 atomic regions from SNP 57402 to 58002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,879 DEBUG Processing 193/862 atomic regions from SNP 57702 to 58302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,090 DEBUG Processing 194/862 atomic regions from SNP 58002 to 58602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,301 DEBUG Processing 195/862 atomic regions from SNP 58302 to 58902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,511 DEBUG Processing 196/862 atomic regions from SNP 58602 to 59202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,720 DEBUG Processing 197/862 atomic regions from SNP 58902 to 59502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,927 DEBUG Processing 198/862 atomic regions from SNP 59202 to 59802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,134 DEBUG Processing 199/862 atomic regions from SNP 59502 to 60102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,341 DEBUG Processing 200/862 atomic regions from SNP 59802 to 60402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,546 DEBUG Processing 201/862 atomic regions from SNP 60102 to 60702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,751 DEBUG Processing 202/862 atomic regions from SNP 60402 to 61002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,958 DEBUG Processing 203/862 atomic regions from SNP 60702 to 61302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,169 DEBUG Processing 204/862 atomic regions from SNP 61002 to 61602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,389 DEBUG Processing 205/862 atomic regions from SNP 61302 to 61902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,618 DEBUG Processing 206/862 atomic regions from SNP 61602 to 62202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,855 DEBUG Processing 207/862 atomic regions from SNP 61902 to 62502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,098 DEBUG Processing 208/862 atomic regions from SNP 62202 to 62802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,337 DEBUG Processing 209/862 atomic regions from SNP 62502 to 63102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,584 DEBUG Processing 210/862 atomic regions from SNP 62802 to 63402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,820 DEBUG Processing 211/862 atomic regions from SNP 63102 to 63702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,048 DEBUG Processing 212/862 atomic regions from SNP 63402 to 64002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,287 DEBUG Processing 213/862 atomic regions from SNP 63702 to 64302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,530 DEBUG Processing 214/862 atomic regions from SNP 64002 to 64602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,759 DEBUG Processing 215/862 atomic regions from SNP 64302 to 64902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,971 DEBUG Processing 216/862 atomic regions from SNP 64602 to 65202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,185 DEBUG Processing 217/862 atomic regions from SNP 64902 to 65502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,403 DEBUG Processing 218/862 atomic regions from SNP 65202 to 65802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,617 DEBUG Processing 219/862 atomic regions from SNP 65502 to 66102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,830 DEBUG Processing 220/862 atomic regions from SNP 65802 to 66402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,042 DEBUG Processing 221/862 atomic regions from SNP 66102 to 66702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,253 DEBUG Processing 222/862 atomic regions from SNP 66402 to 67002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,464 DEBUG Processing 223/862 atomic regions from SNP 66702 to 67302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,674 DEBUG Processing 224/862 atomic regions from SNP 67002 to 67602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,885 DEBUG Processing 225/862 atomic regions from SNP 67302 to 67902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,098 DEBUG Processing 226/862 atomic regions from SNP 67602 to 68202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,310 DEBUG Processing 227/862 atomic regions from SNP 67902 to 68502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,517 DEBUG Processing 228/862 atomic regions from SNP 68202 to 68802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,725 DEBUG Processing 229/862 atomic regions from SNP 68502 to 69102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,945 DEBUG Processing 230/862 atomic regions from SNP 68802 to 69402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,153 DEBUG Processing 231/862 atomic regions from SNP 69102 to 69702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,358 DEBUG Processing 232/862 atomic regions from SNP 69402 to 70002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,567 DEBUG Processing 233/862 atomic regions from SNP 69702 to 70302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,787 DEBUG Processing 234/862 atomic regions from SNP 70002 to 70602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,997 DEBUG Processing 235/862 atomic regions from SNP 70302 to 70902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,217 DEBUG Processing 236/862 atomic regions from SNP 70602 to 71202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,429 DEBUG Processing 237/862 atomic regions from SNP 70902 to 71502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,639 DEBUG Processing 238/862 atomic regions from SNP 71202 to 71802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,848 DEBUG Processing 239/862 atomic regions from SNP 71502 to 72102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,056 DEBUG Processing 240/862 atomic regions from SNP 71802 to 72402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,262 DEBUG Processing 241/862 atomic regions from SNP 72102 to 72702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,471 DEBUG Processing 242/862 atomic regions from SNP 72402 to 73002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,678 DEBUG Processing 243/862 atomic regions from SNP 72702 to 73302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,888 DEBUG Processing 244/862 atomic regions from SNP 73002 to 73602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,098 DEBUG Processing 245/862 atomic regions from SNP 73302 to 73902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,251 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:49:16,309 DEBUG Processing 246/862 atomic regions from SNP 73602 to 74202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,522 DEBUG Processing 247/862 atomic regions from SNP 73902 to 74502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,732 DEBUG Processing 248/862 atomic regions from SNP 74202 to 74802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,814 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:49:16,943 DEBUG Processing 249/862 atomic regions from SNP 74502 to 75102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,156 DEBUG Processing 250/862 atomic regions from SNP 74802 to 75402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,369 DEBUG Processing 251/862 atomic regions from SNP 75102 to 75702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,581 DEBUG Processing 252/862 atomic regions from SNP 75402 to 76002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,791 DEBUG Processing 253/862 atomic regions from SNP 75702 to 76302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,000 DEBUG Processing 254/862 atomic regions from SNP 76002 to 76602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,208 DEBUG Processing 255/862 atomic regions from SNP 76302 to 76902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,418 DEBUG Processing 256/862 atomic regions from SNP 76602 to 77202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,630 DEBUG Processing 257/862 atomic regions from SNP 76902 to 77502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,849 DEBUG Processing 258/862 atomic regions from SNP 77202 to 77802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,079 DEBUG Processing 259/862 atomic regions from SNP 77502 to 78102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,301 DEBUG Processing 260/862 atomic regions from SNP 77802 to 78402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,545 DEBUG Processing 261/862 atomic regions from SNP 78102 to 78702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,789 DEBUG Processing 262/862 atomic regions from SNP 78402 to 79002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,013 DEBUG Processing 263/862 atomic regions from SNP 78702 to 79302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,220 DEBUG Processing 264/862 atomic regions from SNP 79002 to 79602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,430 DEBUG Processing 265/862 atomic regions from SNP 79302 to 79902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,642 DEBUG Processing 266/862 atomic regions from SNP 79602 to 80202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,863 DEBUG Processing 267/862 atomic regions from SNP 79902 to 80502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,075 DEBUG Processing 268/862 atomic regions from SNP 80202 to 80802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,307 DEBUG Processing 269/862 atomic regions from SNP 80502 to 81102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,549 DEBUG Processing 270/862 atomic regions from SNP 80802 to 81402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,767 DEBUG Processing 271/862 atomic regions from SNP 81102 to 81702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,975 DEBUG Processing 272/862 atomic regions from SNP 81402 to 82002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,182 DEBUG Processing 273/862 atomic regions from SNP 81702 to 82302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,394 DEBUG Processing 274/862 atomic regions from SNP 82002 to 82602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,605 DEBUG Processing 275/862 atomic regions from SNP 82302 to 82902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,824 DEBUG Processing 276/862 atomic regions from SNP 82602 to 83202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,042 DEBUG Processing 277/862 atomic regions from SNP 82902 to 83502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,252 DEBUG Processing 278/862 atomic regions from SNP 83202 to 83802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,463 DEBUG Processing 279/862 atomic regions from SNP 83502 to 84102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,675 DEBUG Processing 280/862 atomic regions from SNP 83802 to 84402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,889 DEBUG Processing 281/862 atomic regions from SNP 84102 to 84702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,124 DEBUG Processing 282/862 atomic regions from SNP 84402 to 85002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,198 DEBUG Subchromosome time: 354.5930091366172, subchromosome SNPs: 309432 2025-01-31 09:49:24,201 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:24,341 DEBUG Processing 283/862 atomic regions from SNP 84702 to 85302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,578 DEBUG Processing 284/862 atomic regions from SNP 85002 to 85602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,785 DEBUG Processing 285/862 atomic regions from SNP 85302 to 85902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,954 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:49:24,992 DEBUG Processing 286/862 atomic regions from SNP 85602 to 86202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,112 DEBUG Segmenting atomic regions: 2025-01-31 09:49:25,201 DEBUG Processing 287/862 atomic regions from SNP 85902 to 86502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,247 DEBUG Processing 1/25 atomic regions from SNP 0 to 603 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:25,414 DEBUG Processing 288/862 atomic regions from SNP 86202 to 86802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,489 DEBUG Processing 2/25 atomic regions from SNP 303 to 906 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:25,626 DEBUG Processing 289/862 atomic regions from SNP 86502 to 87102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,733 DEBUG Processing 3/25 atomic regions from SNP 606 to 1209 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:25,838 DEBUG Processing 290/862 atomic regions from SNP 86802 to 87402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,983 DEBUG Processing 4/25 atomic regions from SNP 909 to 1512 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:26,056 DEBUG Processing 291/862 atomic regions from SNP 87102 to 87702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,241 DEBUG Processing 5/25 atomic regions from SNP 1212 to 1815 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:26,281 DEBUG Processing 292/862 atomic regions from SNP 87402 to 88002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,489 DEBUG Processing 6/25 atomic regions from SNP 1515 to 2118 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:26,501 DEBUG Processing 293/862 atomic regions from SNP 87702 to 88302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,710 DEBUG Processing 294/862 atomic regions from SNP 88002 to 88602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,729 DEBUG Processing 7/25 atomic regions from SNP 1818 to 2421 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:26,920 DEBUG Processing 295/862 atomic regions from SNP 88302 to 88902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,968 DEBUG Processing 8/25 atomic regions from SNP 2121 to 2724 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:27,130 DEBUG Processing 296/862 atomic regions from SNP 88602 to 89202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,206 DEBUG Processing 9/25 atomic regions from SNP 2424 to 3027 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:27,339 DEBUG Processing 297/862 atomic regions from SNP 88902 to 89502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,446 DEBUG Processing 10/25 atomic regions from SNP 2727 to 3330 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:27,548 DEBUG Processing 298/862 atomic regions from SNP 89202 to 89802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,686 DEBUG Processing 11/25 atomic regions from SNP 3030 to 3633 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:27,756 DEBUG Processing 299/862 atomic regions from SNP 89502 to 90102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,936 DEBUG Processing 12/25 atomic regions from SNP 3333 to 3936 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:27,965 DEBUG Processing 300/862 atomic regions from SNP 89802 to 90402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,174 DEBUG Processing 301/862 atomic regions from SNP 90102 to 90702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,194 DEBUG Processing 13/25 atomic regions from SNP 3636 to 4239 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:28,383 DEBUG Processing 302/862 atomic regions from SNP 90402 to 91002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,468 DEBUG Processing 14/25 atomic regions from SNP 3939 to 4542 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:28,609 DEBUG Processing 303/862 atomic regions from SNP 90702 to 91302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,742 DEBUG Processing 15/25 atomic regions from SNP 4242 to 4845 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:28,855 DEBUG Processing 304/862 atomic regions from SNP 91002 to 91602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,013 DEBUG Processing 16/25 atomic regions from SNP 4545 to 5148 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:29,088 DEBUG Processing 305/862 atomic regions from SNP 91302 to 91902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,288 DEBUG Processing 17/25 atomic regions from SNP 4848 to 5451 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:29,318 DEBUG Processing 306/862 atomic regions from SNP 91602 to 92202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,541 DEBUG Processing 307/862 atomic regions from SNP 91902 to 92502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,560 DEBUG Processing 18/25 atomic regions from SNP 5151 to 5753 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:29,748 DEBUG Processing 308/862 atomic regions from SNP 92202 to 92802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,832 DEBUG Processing 19/25 atomic regions from SNP 5453 to 6055 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:29,952 DEBUG Processing 309/862 atomic regions from SNP 92502 to 93102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,104 DEBUG Processing 20/25 atomic regions from SNP 5755 to 6357 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:30,160 DEBUG Processing 310/862 atomic regions from SNP 92802 to 93402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,368 DEBUG Processing 311/862 atomic regions from SNP 93102 to 93702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,378 DEBUG Processing 21/25 atomic regions from SNP 6057 to 6659 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:30,576 DEBUG Processing 312/862 atomic regions from SNP 93402 to 94002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,652 DEBUG Processing 22/25 atomic regions from SNP 6359 to 6961 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:30,785 DEBUG Processing 313/862 atomic regions from SNP 93702 to 94302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,923 DEBUG Processing 23/25 atomic regions from SNP 6661 to 7263 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:30,991 DEBUG Processing 314/862 atomic regions from SNP 94002 to 94602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,199 DEBUG Processing 315/862 atomic regions from SNP 94302 to 94902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,199 DEBUG Processing 24/25 atomic regions from SNP 6963 to 7565 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:31,410 DEBUG Processing 316/862 atomic regions from SNP 94602 to 95202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,472 DEBUG Processing 25/25 atomic regions from SNP 7265 to 7867 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:31,602 DEBUG Unique SNPs positions in subchromosome 2: 7868 2025-01-31 09:49:31,611 DEBUG Subchromosome time: 7.410475172102451, subchromosome SNPs: 7868 2025-01-31 09:49:31,612 DEBUG Estimated BADs: [2.66, 0.67, 2.66, 0.89, 5.33, 1.33, 7.99, 0.67, 5.33, 0.53, 2.66, 0.53, 1.33, 0.67, 5.33, 1.33, 0.89, 2.66, 0.67, 2.66, 7.99, 0.44, 5.33, 0.44, 2.66, 0.89, 5.33, 1.33, 5.33, 0.53, 2.66, 5.33, 1.33, 2.66, 0.89, 7.99, 2.66, 1.33, 7.99, 2.66, 5.33, 2.66, 10.65] SNP counts: [7927, 2999, 11137, 4587, 3237, 8682, 21557, 1304, 4255, 8638, 2110, 4487, 9600, 6253, 662, 9442, 10411, 22996, 3928, 2315, 1297, 7513, 8977, 9880, 12361, 7447, 1216, 10477, 8123, 1813, 5784, 12211, 14089, 13488, 3076, 14051, 6290, 1916, 9792, 7788, 5316, 3739, 4129] SNP IDs counts: [7927, 2999, 11137, 4587, 3237, 8682, 21557, 1304, 4255, 8638, 2110, 4487, 9600, 6253, 662, 9442, 10411, 22996, 3928, 2315, 1297, 7513, 8977, 9880, 12361, 7447, 1216, 10477, 8123, 1813, 5784, 12211, 14089, 13488, 3076, 14051, 6290, 1916, 9792, 7788, 5316, 3739, 4129] Critical gap: 723848bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.36Mbp, 9.12Mbp, 15.37Mbp, 18.03Mbp, 19.81Mbp, 24.92Mbp, 36.26Mbp, 37.08Mbp, 39.40Mbp, 44.32Mbp, 45.45Mbp, 48.06Mbp, 53.28Mbp, 57.11Mbp, 57.48Mbp, 62.69Mbp, 68.49Mbp, 80.84Mbp, 83.18Mbp, 84.65Mbp, 85.35Mbp, 89.91Mbp, 94.88Mbp, 101.16Mbp, 107.83Mbp, 112.24Mbp, 112.91Mbp, 118.65Mbp, 123.02Mbp, 124.06Mbp, 127.21Mbp, 133.73Mbp, 141.55Mbp, 148.91Mbp, 150.74Mbp, 158.50Mbp, 161.87Mbp, 162.92Mbp, 168.10Mbp, 172.22Mbp, 175.18Mbp[1.52Mbp], 179.82Mbp, 182.11Mbp] 2025-01-31 09:49:31,612 DEBUG chr2 time: 7.411026583984494 s 2025-01-31 09:49:31,643 DEBUG Processing 317/862 atomic regions from SNP 94902 to 95502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,779 DEBUG chr2: Fitting background model for 43 segments 2025-01-31 09:49:31,867 DEBUG Processing 318/862 atomic regions from SNP 95202 to 95802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,078 DEBUG Processing 319/862 atomic regions from SNP 95502 to 96102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,289 DEBUG Processing 320/862 atomic regions from SNP 95802 to 96402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,505 DEBUG Processing 321/862 atomic regions from SNP 96102 to 96702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,744 DEBUG Processing 322/862 atomic regions from SNP 96402 to 97002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,960 DEBUG Processing 323/862 atomic regions from SNP 96702 to 97302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,172 DEBUG Processing 324/862 atomic regions from SNP 97002 to 97602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,386 DEBUG Processing 325/862 atomic regions from SNP 97302 to 97902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,601 DEBUG Processing 326/862 atomic regions from SNP 97602 to 98202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,607 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:49:33,609 DEBUG chr10: Signal quantile: 0.991. signal threshold: 18. Best RMSEA: 0.012 2025-01-31 09:49:33,814 DEBUG Processing 327/862 atomic regions from SNP 97902 to 98502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,024 DEBUG Processing 328/862 atomic regions from SNP 98202 to 98802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,235 DEBUG Processing 329/862 atomic regions from SNP 98502 to 99102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,448 DEBUG Processing 330/862 atomic regions from SNP 98802 to 99402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,660 DEBUG Processing 331/862 atomic regions from SNP 99102 to 99702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,873 DEBUG Processing 332/862 atomic regions from SNP 99402 to 100002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,088 DEBUG Processing 333/862 atomic regions from SNP 99702 to 100302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,299 DEBUG Processing 334/862 atomic regions from SNP 100002 to 100602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,509 DEBUG Processing 335/862 atomic regions from SNP 100302 to 100902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,720 DEBUG Processing 336/862 atomic regions from SNP 100602 to 101202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,747 DEBUG chr10 total SNP count: 226334 2025-01-31 09:49:35,747 DEBUG chr10 length: 130694993 2025-01-31 09:49:35,747 DEBUG ----------------------------------------- 2025-01-31 09:49:35,747 INFO Processing SNPs in chr10 2025-01-31 09:49:35,930 DEBUG Processing 337/862 atomic regions from SNP 100902 to 101502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,968 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 226334)] 2025-01-31 09:49:36,117 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:36,139 DEBUG Processing 338/862 atomic regions from SNP 101202 to 101802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,348 DEBUG Processing 339/862 atomic regions from SNP 101502 to 102102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,560 DEBUG Processing 340/862 atomic regions from SNP 101802 to 102402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,768 DEBUG Processing 341/862 atomic regions from SNP 102102 to 102702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,975 DEBUG Processing 342/862 atomic regions from SNP 102402 to 103002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,184 DEBUG Processing 343/862 atomic regions from SNP 102702 to 103302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,393 DEBUG Processing 344/862 atomic regions from SNP 103002 to 103602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,608 DEBUG Processing 345/862 atomic regions from SNP 103302 to 103902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,820 DEBUG Processing 346/862 atomic regions from SNP 103602 to 104202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,036 DEBUG Processing 347/862 atomic regions from SNP 103902 to 104502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,251 DEBUG Processing 348/862 atomic regions from SNP 104202 to 104802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,463 DEBUG Processing 349/862 atomic regions from SNP 104502 to 105102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,672 DEBUG Processing 350/862 atomic regions from SNP 104802 to 105402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,880 DEBUG Processing 351/862 atomic regions from SNP 105102 to 105702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,089 DEBUG Processing 352/862 atomic regions from SNP 105402 to 106002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,298 DEBUG Processing 353/862 atomic regions from SNP 105702 to 106302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,507 DEBUG Processing 354/862 atomic regions from SNP 106002 to 106602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,716 DEBUG Processing 355/862 atomic regions from SNP 106302 to 106902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,922 DEBUG Processing 356/862 atomic regions from SNP 106602 to 107202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,131 DEBUG Processing 357/862 atomic regions from SNP 106902 to 107502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,341 DEBUG Processing 358/862 atomic regions from SNP 107202 to 107802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,550 DEBUG Processing 359/862 atomic regions from SNP 107502 to 108102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,761 DEBUG Processing 360/862 atomic regions from SNP 107802 to 108402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,973 DEBUG Processing 361/862 atomic regions from SNP 108102 to 108702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,186 DEBUG Processing 362/862 atomic regions from SNP 108402 to 109002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,398 DEBUG Processing 363/862 atomic regions from SNP 108702 to 109302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,614 DEBUG Processing 364/862 atomic regions from SNP 109002 to 109602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,828 DEBUG Processing 365/862 atomic regions from SNP 109302 to 109902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,041 DEBUG Processing 366/862 atomic regions from SNP 109602 to 110202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,253 DEBUG Processing 367/862 atomic regions from SNP 109902 to 110502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,467 DEBUG Processing 368/862 atomic regions from SNP 110202 to 110802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,534 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:49:42,536 DEBUG chr8: Signal quantile: 0.990. signal threshold: 20. Best RMSEA: 0.012 2025-01-31 09:49:42,683 DEBUG Processing 369/862 atomic regions from SNP 110502 to 111102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,897 DEBUG Processing 370/862 atomic regions from SNP 110802 to 111402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,110 DEBUG Processing 371/862 atomic regions from SNP 111102 to 111702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,323 DEBUG Processing 372/862 atomic regions from SNP 111402 to 112002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,535 DEBUG Processing 373/862 atomic regions from SNP 111702 to 112302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,754 DEBUG Processing 374/862 atomic regions from SNP 112002 to 112602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,995 DEBUG Processing 375/862 atomic regions from SNP 112302 to 112902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,232 DEBUG Processing 376/862 atomic regions from SNP 112602 to 113202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,447 DEBUG Processing 377/862 atomic regions from SNP 112902 to 113502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,661 DEBUG Processing 378/862 atomic regions from SNP 113202 to 113802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,696 DEBUG chr8 total SNP count: 222037 2025-01-31 09:49:44,697 DEBUG chr8 length: 129401213 2025-01-31 09:49:44,697 DEBUG ----------------------------------------- 2025-01-31 09:49:44,697 INFO Processing SNPs in chr8 2025-01-31 09:49:44,873 DEBUG Processing 379/862 atomic regions from SNP 113502 to 114102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,914 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 222037)] 2025-01-31 09:49:45,062 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:45,085 DEBUG Processing 380/862 atomic regions from SNP 113802 to 114402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,299 DEBUG Processing 381/862 atomic regions from SNP 114102 to 114702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,518 DEBUG Processing 382/862 atomic regions from SNP 114402 to 115002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,732 DEBUG Processing 383/862 atomic regions from SNP 114702 to 115302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,945 DEBUG Processing 384/862 atomic regions from SNP 115002 to 115602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,158 DEBUG Processing 385/862 atomic regions from SNP 115302 to 115902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,374 DEBUG Processing 386/862 atomic regions from SNP 115602 to 116202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,448 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:49:46,450 DEBUG chr7: Signal quantile: 0.988. signal threshold: 19. Best RMSEA: 0.010 2025-01-31 09:49:46,586 DEBUG Processing 387/862 atomic regions from SNP 115902 to 116502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,799 DEBUG Processing 388/862 atomic regions from SNP 116202 to 116802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,011 DEBUG Processing 389/862 atomic regions from SNP 116502 to 117102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,224 DEBUG Processing 390/862 atomic regions from SNP 116802 to 117402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,438 DEBUG Processing 391/862 atomic regions from SNP 117102 to 117702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,662 DEBUG Processing 392/862 atomic regions from SNP 117402 to 118002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,878 DEBUG Processing 393/862 atomic regions from SNP 117702 to 118302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,118 DEBUG Processing 394/862 atomic regions from SNP 118002 to 118602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,353 DEBUG Processing 395/862 atomic regions from SNP 118302 to 118902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,569 DEBUG Processing 396/862 atomic regions from SNP 118602 to 119202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,794 DEBUG Processing 397/862 atomic regions from SNP 118902 to 119502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,808 DEBUG chr7 total SNP count: 233931 2025-01-31 09:49:48,808 DEBUG chr7 length: 145441459 2025-01-31 09:49:48,808 DEBUG ----------------------------------------- 2025-01-31 09:49:48,808 INFO Processing SNPs in chr7 2025-01-31 09:49:49,021 DEBUG Processing 398/862 atomic regions from SNP 119202 to 119802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,173 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 21108), (21108, 21141), (21141, 233931)] 2025-01-31 09:49:49,250 DEBUG Processing 399/862 atomic regions from SNP 119502 to 120102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,279 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:49,482 DEBUG Processing 400/862 atomic regions from SNP 119802 to 120402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,714 DEBUG Processing 401/862 atomic regions from SNP 120102 to 120702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,940 DEBUG Processing 402/862 atomic regions from SNP 120402 to 121002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,181 DEBUG Processing 403/862 atomic regions from SNP 120702 to 121302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,429 DEBUG Processing 404/862 atomic regions from SNP 121002 to 121602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,675 DEBUG Processing 405/862 atomic regions from SNP 121302 to 121902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,914 DEBUG Processing 406/862 atomic regions from SNP 121602 to 122202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,144 DEBUG Processing 407/862 atomic regions from SNP 121902 to 122502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,370 DEBUG Processing 408/862 atomic regions from SNP 122202 to 122802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,583 DEBUG Processing 409/862 atomic regions from SNP 122502 to 123102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,757 DEBUG Segmenting atomic regions: 2025-01-31 09:49:51,820 DEBUG Processing 410/862 atomic regions from SNP 122802 to 123402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,857 DEBUG Processing 1/69 atomic regions from SNP 0 to 602 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:52,031 DEBUG Processing 411/862 atomic regions from SNP 123102 to 123702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,061 DEBUG Processing 2/69 atomic regions from SNP 302 to 904 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:52,243 DEBUG Processing 412/862 atomic regions from SNP 123402 to 124002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,262 DEBUG Processing 3/69 atomic regions from SNP 604 to 1206 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:52,451 DEBUG Processing 413/862 atomic regions from SNP 123702 to 124302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,490 DEBUG Processing 4/69 atomic regions from SNP 906 to 1508 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:52,661 DEBUG Processing 414/862 atomic regions from SNP 124002 to 124602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,705 DEBUG Processing 5/69 atomic regions from SNP 1208 to 1810 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:52,870 DEBUG Processing 415/862 atomic regions from SNP 124302 to 124902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,931 DEBUG Processing 6/69 atomic regions from SNP 1510 to 2112 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:53,081 DEBUG Processing 416/862 atomic regions from SNP 124602 to 125202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,149 DEBUG Processing 7/69 atomic regions from SNP 1812 to 2414 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:53,291 DEBUG Processing 417/862 atomic regions from SNP 124902 to 125502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,384 DEBUG Processing 8/69 atomic regions from SNP 2114 to 2716 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:53,501 DEBUG Processing 418/862 atomic regions from SNP 125202 to 125802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,618 DEBUG Processing 9/69 atomic regions from SNP 2416 to 3018 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:53,716 DEBUG Processing 419/862 atomic regions from SNP 125502 to 126102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,855 DEBUG Processing 10/69 atomic regions from SNP 2718 to 3320 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:53,930 DEBUG Processing 420/862 atomic regions from SNP 125802 to 126402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,087 DEBUG Processing 11/69 atomic regions from SNP 3020 to 3622 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:54,144 DEBUG Processing 421/862 atomic regions from SNP 126102 to 126702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,295 DEBUG Processing 12/69 atomic regions from SNP 3322 to 3924 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:54,360 DEBUG Processing 422/862 atomic regions from SNP 126402 to 127002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,493 DEBUG Processing 13/69 atomic regions from SNP 3624 to 4226 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:54,574 DEBUG Processing 423/862 atomic regions from SNP 126702 to 127302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,693 DEBUG Processing 14/69 atomic regions from SNP 3926 to 4528 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:54,788 DEBUG Processing 424/862 atomic regions from SNP 127002 to 127602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,889 DEBUG Processing 15/69 atomic regions from SNP 4228 to 4830 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:54,998 DEBUG Processing 425/862 atomic regions from SNP 127302 to 127902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,105 DEBUG Processing 16/69 atomic regions from SNP 4530 to 5132 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:55,209 DEBUG Processing 426/862 atomic regions from SNP 127602 to 128202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,339 DEBUG Processing 17/69 atomic regions from SNP 4832 to 5434 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:55,421 DEBUG Processing 427/862 atomic regions from SNP 127902 to 128502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,560 DEBUG Processing 18/69 atomic regions from SNP 5134 to 5736 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:55,628 DEBUG Processing 428/862 atomic regions from SNP 128202 to 128802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,765 DEBUG Processing 19/69 atomic regions from SNP 5436 to 6038 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:55,837 DEBUG Processing 429/862 atomic regions from SNP 128502 to 129102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,990 DEBUG Processing 20/69 atomic regions from SNP 5738 to 6340 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:56,044 DEBUG Processing 430/862 atomic regions from SNP 128802 to 129402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,198 DEBUG Processing 21/69 atomic regions from SNP 6040 to 6642 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:56,252 DEBUG Processing 431/862 atomic regions from SNP 129102 to 129702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,397 DEBUG Processing 22/69 atomic regions from SNP 6342 to 6944 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:56,460 DEBUG Processing 432/862 atomic regions from SNP 129402 to 130002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,596 DEBUG Processing 23/69 atomic regions from SNP 6644 to 7246 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:56,668 DEBUG Processing 433/862 atomic regions from SNP 129702 to 130302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,799 DEBUG Processing 24/69 atomic regions from SNP 6946 to 7548 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:56,875 DEBUG Processing 434/862 atomic regions from SNP 130002 to 130602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,001 DEBUG Processing 25/69 atomic regions from SNP 7248 to 7850 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:57,083 DEBUG Processing 435/862 atomic regions from SNP 130302 to 130902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,204 DEBUG Processing 26/69 atomic regions from SNP 7550 to 8152 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:57,291 DEBUG Processing 436/862 atomic regions from SNP 130602 to 131202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,405 DEBUG Processing 27/69 atomic regions from SNP 7852 to 8454 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:57,451 DEBUG Subchromosome time: 388.4968523848802, subchromosome SNPs: 342153 2025-01-31 09:49:57,451 DEBUG Estimated BADs: [0.92, 5.53, 1.38, 0.92, 8.29, 1.38, 5.53, 2.76, 11.06, 5.53, 2.76, 1.38, 0.92, 11.06, 2.76, 5.53, 2.76, 5.53, 1.38, 5.53, 13.82, 2.76, 8.29, 27.65, 5.53, 8.29, 0.92, 2.76, 0.69, 5.53, 2.76, 0.92, 2.76, 8.29, 2.76, 0.69, 2.76, 0.69, 1.38, 5.53, 2.76, 5.53, 2.76, 8.29, 2.76, 27.65, 5.53, 11.06, 5.53, 2.76, 11.06, 5.53] SNP counts: [10968, 870, 11533, 24376, 297, 4231, 2706, 1967, 1803, 4877, 9216, 4184, 8573, 234, 11069, 2743, 5130, 4611, 12599, 3670, 2093, 17035, 1879, 378, 8680, 5086, 17632, 4807, 18900, 3314, 5086, 2382, 11814, 10709, 5870, 5528, 2467, 8633, 2760, 11038, 5717, 15019, 4707, 2466, 10785, 204, 2046, 3443, 7513, 10011, 2276, 6218] SNP IDs counts: [10968, 870, 11533, 24376, 297, 4231, 2706, 1967, 1803, 4877, 9216, 4184, 8573, 234, 11069, 2743, 5130, 4611, 12599, 3670, 2093, 17035, 1879, 378, 8680, 5086, 17632, 4807, 18900, 3314, 5086, 2382, 11814, 10709, 5870, 5528, 2467, 8633, 2760, 11038, 5717, 15019, 4707, 2466, 10785, 204, 2046, 3443, 7513, 10011, 2276, 6218] Critical gap: 755772bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.54Mbp, 10.00Mbp, 16.62Mbp, 30.79Mbp, 30.96Mbp, 33.45Mbp, 34.90Mbp, 36.00Mbp, 36.94Mbp, 39.52Mbp, 44.55Mbp, 47.11Mbp, 52.10Mbp, 52.22Mbp, 58.39Mbp, 59.88Mbp, 62.70Mbp, 65.19Mbp, 72.21Mbp, 74.19Mbp, 75.36Mbp, 84.84Mbp, 86.34Mbp, 86.54Mbp, 91.18Mbp, 93.87Mbp, 104.37Mbp, 107.03Mbp, 118.31Mbp, 120.05Mbp, 122.87Mbp, 124.19Mbp, 130.69Mbp, 136.31Mbp, 139.52Mbp, 142.85Mbp, 144.34Mbp, 149.48Mbp, 151.03Mbp, 156.97Mbp, 160.04Mbp, 168.27Mbp, 170.83Mbp, 172.20Mbp, 178.30Mbp, 178.41Mbp, 179.48Mbp, 181.31Mbp, 185.43Mbp, 190.74Mbp, 191.95Mbp, 195.47Mbp] 2025-01-31 09:49:57,451 DEBUG chr1 time: 388.4975590519607 s 2025-01-31 09:49:57,500 DEBUG Processing 437/862 atomic regions from SNP 130902 to 131502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,607 DEBUG Processing 28/69 atomic regions from SNP 8154 to 8756 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:57,633 DEBUG chr1: Fitting background model for 52 segments 2025-01-31 09:49:57,710 DEBUG Processing 438/862 atomic regions from SNP 131202 to 131802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,806 DEBUG Processing 29/69 atomic regions from SNP 8456 to 9058 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:57,919 DEBUG Processing 439/862 atomic regions from SNP 131502 to 132102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,009 DEBUG Processing 30/69 atomic regions from SNP 8758 to 9360 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:58,131 DEBUG Processing 440/862 atomic regions from SNP 131802 to 132402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,211 DEBUG Processing 31/69 atomic regions from SNP 9060 to 9662 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:58,343 DEBUG Processing 441/862 atomic regions from SNP 132102 to 132702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,411 DEBUG Processing 32/69 atomic regions from SNP 9362 to 9964 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:58,554 DEBUG Processing 442/862 atomic regions from SNP 132402 to 133002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,613 DEBUG Processing 33/69 atomic regions from SNP 9664 to 10266 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:58,762 DEBUG Processing 443/862 atomic regions from SNP 132702 to 133302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,813 DEBUG Processing 34/69 atomic regions from SNP 9966 to 10568 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:58,971 DEBUG Processing 444/862 atomic regions from SNP 133002 to 133602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,015 DEBUG Processing 35/69 atomic regions from SNP 10268 to 10870 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:59,183 DEBUG Processing 445/862 atomic regions from SNP 133302 to 133902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,241 DEBUG Processing 36/69 atomic regions from SNP 10570 to 11172 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:59,395 DEBUG Processing 446/862 atomic regions from SNP 133602 to 134202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,473 DEBUG Processing 37/69 atomic regions from SNP 10872 to 11474 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:59,606 DEBUG Processing 447/862 atomic regions from SNP 133902 to 134502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,677 DEBUG Processing 38/69 atomic regions from SNP 11174 to 11776 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:59,815 DEBUG Processing 448/862 atomic regions from SNP 134202 to 134802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,875 DEBUG Processing 39/69 atomic regions from SNP 11476 to 12077 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:00,027 DEBUG Processing 449/862 atomic regions from SNP 134502 to 135102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,077 DEBUG Processing 40/69 atomic regions from SNP 11777 to 12378 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:00,242 DEBUG Processing 450/862 atomic regions from SNP 134802 to 135402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,280 DEBUG Processing 41/69 atomic regions from SNP 12078 to 12679 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:00,459 DEBUG Processing 451/862 atomic regions from SNP 135102 to 135702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,483 DEBUG Processing 42/69 atomic regions from SNP 12379 to 12980 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:00,672 DEBUG Processing 452/862 atomic regions from SNP 135402 to 136002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,686 DEBUG Processing 43/69 atomic regions from SNP 12680 to 13281 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:00,885 DEBUG Processing 453/862 atomic regions from SNP 135702 to 136302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,891 DEBUG Processing 44/69 atomic regions from SNP 12981 to 13582 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:01,098 DEBUG Processing 45/69 atomic regions from SNP 13282 to 13883 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:01,101 DEBUG Processing 454/862 atomic regions from SNP 136002 to 136602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,302 DEBUG Processing 46/69 atomic regions from SNP 13583 to 14184 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:01,317 DEBUG Processing 455/862 atomic regions from SNP 136302 to 136902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,505 DEBUG Processing 47/69 atomic regions from SNP 13884 to 14485 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:01,531 DEBUG Processing 456/862 atomic regions from SNP 136602 to 137202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,737 DEBUG Processing 48/69 atomic regions from SNP 14185 to 14786 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:01,756 DEBUG Processing 457/862 atomic regions from SNP 136902 to 137502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,969 DEBUG Processing 458/862 atomic regions from SNP 137202 to 137802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,974 DEBUG Processing 49/69 atomic regions from SNP 14486 to 15087 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:02,183 DEBUG Processing 459/862 atomic regions from SNP 137502 to 138102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,205 DEBUG Processing 50/69 atomic regions from SNP 14787 to 15388 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:02,397 DEBUG Processing 460/862 atomic regions from SNP 137802 to 138402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,439 DEBUG Processing 51/69 atomic regions from SNP 15088 to 15689 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:02,609 DEBUG Processing 461/862 atomic regions from SNP 138102 to 138702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,639 DEBUG Segmenting atomic regions: 2025-01-31 09:50:02,675 DEBUG Processing 52/69 atomic regions from SNP 15389 to 15990 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:02,738 DEBUG Processing 1/753 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,821 DEBUG Processing 462/862 atomic regions from SNP 138402 to 139002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,889 DEBUG Processing 53/69 atomic regions from SNP 15690 to 16291 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:02,939 DEBUG Processing 2/753 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,035 DEBUG Processing 463/862 atomic regions from SNP 138702 to 139302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,125 DEBUG Processing 54/69 atomic regions from SNP 15991 to 16592 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:03,142 DEBUG Processing 3/753 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,265 DEBUG Processing 464/862 atomic regions from SNP 139002 to 139602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,344 DEBUG Processing 4/753 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,364 DEBUG Processing 55/69 atomic regions from SNP 16292 to 16893 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:03,494 DEBUG Processing 465/862 atomic regions from SNP 139302 to 139902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,545 DEBUG Processing 5/753 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,584 DEBUG Processing 56/69 atomic regions from SNP 16593 to 17194 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:03,730 DEBUG Processing 466/862 atomic regions from SNP 139602 to 140202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,769 DEBUG Processing 6/753 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,788 DEBUG Processing 57/69 atomic regions from SNP 16894 to 17495 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:03,980 DEBUG Processing 7/753 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,981 DEBUG Processing 467/862 atomic regions from SNP 139902 to 140502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,994 DEBUG Processing 58/69 atomic regions from SNP 17195 to 17796 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:04,198 DEBUG Processing 59/69 atomic regions from SNP 17496 to 18097 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:04,201 DEBUG Processing 8/753 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,232 DEBUG Processing 468/862 atomic regions from SNP 140202 to 140802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,402 DEBUG Processing 60/69 atomic regions from SNP 17797 to 18398 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:04,425 DEBUG Processing 9/753 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,484 DEBUG Processing 469/862 atomic regions from SNP 140502 to 141102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,603 DEBUG Processing 61/69 atomic regions from SNP 18098 to 18699 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:04,627 DEBUG Processing 10/753 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,728 DEBUG Processing 470/862 atomic regions from SNP 140802 to 141402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,806 DEBUG Processing 62/69 atomic regions from SNP 18399 to 19000 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:04,830 DEBUG Processing 11/753 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,969 DEBUG Processing 471/862 atomic regions from SNP 141102 to 141702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,008 DEBUG Processing 63/69 atomic regions from SNP 18700 to 19301 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:05,029 DEBUG Processing 12/753 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,195 DEBUG Processing 472/862 atomic regions from SNP 141402 to 142002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,232 DEBUG Processing 13/753 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,236 DEBUG Processing 64/69 atomic regions from SNP 19001 to 19602 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:05,413 DEBUG Processing 473/862 atomic regions from SNP 141702 to 142302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,434 DEBUG Processing 14/753 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,477 DEBUG Processing 65/69 atomic regions from SNP 19302 to 19903 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:05,627 DEBUG Processing 474/862 atomic regions from SNP 142002 to 142602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,637 DEBUG Processing 15/753 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,716 DEBUG Processing 66/69 atomic regions from SNP 19603 to 20204 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:05,837 DEBUG Processing 16/753 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,840 DEBUG Processing 475/862 atomic regions from SNP 142302 to 142902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,949 DEBUG Processing 67/69 atomic regions from SNP 19904 to 20505 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:06,053 DEBUG Processing 476/862 atomic regions from SNP 142602 to 143202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,065 DEBUG Processing 17/753 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,184 DEBUG Processing 68/69 atomic regions from SNP 20205 to 20806 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:06,269 DEBUG Processing 477/862 atomic regions from SNP 142902 to 143502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,270 DEBUG Processing 18/753 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,411 DEBUG Processing 69/69 atomic regions from SNP 20506 to 21107 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:06,475 DEBUG Processing 19/753 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,486 DEBUG Processing 478/862 atomic regions from SNP 143202 to 143802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,515 DEBUG Unique SNPs positions in subchromosome 1: 21108 2025-01-31 09:50:06,590 DEBUG Subchromosome time: 17.310991739854217, subchromosome SNPs: 21108 2025-01-31 09:50:06,638 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:06,683 DEBUG Processing 20/753 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,707 DEBUG Processing 479/862 atomic regions from SNP 143502 to 144102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,889 DEBUG Processing 21/753 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,938 DEBUG Processing 480/862 atomic regions from SNP 143802 to 144402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,092 DEBUG Processing 22/753 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,185 DEBUG Processing 481/862 atomic regions from SNP 144102 to 144702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,293 DEBUG Processing 23/753 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,425 DEBUG Processing 482/862 atomic regions from SNP 144402 to 145002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,495 DEBUG Processing 24/753 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,636 DEBUG Processing 483/862 atomic regions from SNP 144702 to 145302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,698 DEBUG Processing 25/753 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,871 DEBUG Processing 484/862 atomic regions from SNP 145002 to 145602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,896 DEBUG Processing 26/753 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,113 DEBUG Processing 485/862 atomic regions from SNP 145302 to 145902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,120 DEBUG Processing 27/753 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,341 DEBUG Processing 28/753 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,345 DEBUG Processing 486/862 atomic regions from SNP 145602 to 146202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,548 DEBUG Processing 29/753 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,593 DEBUG Processing 487/862 atomic regions from SNP 145902 to 146502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,752 DEBUG Processing 30/753 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,841 DEBUG Processing 488/862 atomic regions from SNP 146202 to 146802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,951 DEBUG Processing 31/753 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,086 DEBUG Processing 489/862 atomic regions from SNP 146502 to 147102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,152 DEBUG Processing 32/753 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,326 DEBUG Processing 490/862 atomic regions from SNP 146802 to 147402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,354 DEBUG Processing 33/753 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,558 DEBUG Processing 34/753 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,564 DEBUG Processing 491/862 atomic regions from SNP 147102 to 147702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,762 DEBUG Processing 35/753 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,807 DEBUG Processing 492/862 atomic regions from SNP 147402 to 148002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,966 DEBUG Processing 36/753 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,040 DEBUG Processing 493/862 atomic regions from SNP 147702 to 148302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,168 DEBUG Processing 37/753 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,270 DEBUG Processing 494/862 atomic regions from SNP 148002 to 148602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,368 DEBUG Processing 38/753 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,506 DEBUG Processing 495/862 atomic regions from SNP 148302 to 148902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,569 DEBUG Processing 39/753 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,751 DEBUG Processing 496/862 atomic regions from SNP 148602 to 149202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,768 DEBUG Processing 40/753 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,969 DEBUG Processing 41/753 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,991 DEBUG Processing 497/862 atomic regions from SNP 148902 to 149502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,093 DEBUG Segmenting atomic regions: 2025-01-31 09:50:11,170 DEBUG Processing 42/753 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,189 DEBUG Processing 1/739 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,236 DEBUG Processing 498/862 atomic regions from SNP 149202 to 149802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,370 DEBUG Processing 43/753 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,391 DEBUG Processing 2/739 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,476 DEBUG Processing 499/862 atomic regions from SNP 149502 to 150102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,568 DEBUG Processing 44/753 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,615 DEBUG Processing 3/739 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,712 DEBUG Processing 500/862 atomic regions from SNP 149802 to 150402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,769 DEBUG Processing 45/753 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,848 DEBUG Processing 4/739 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,949 DEBUG Processing 501/862 atomic regions from SNP 150102 to 150702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,972 DEBUG Processing 46/753 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,058 DEBUG Processing 5/739 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,173 DEBUG Processing 47/753 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,196 DEBUG Processing 502/862 atomic regions from SNP 150402 to 151002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,258 DEBUG Processing 6/739 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,377 DEBUG Processing 48/753 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,443 DEBUG Processing 503/862 atomic regions from SNP 150702 to 151302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,478 DEBUG Processing 7/739 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,576 DEBUG Processing 49/753 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,675 DEBUG Processing 504/862 atomic regions from SNP 151002 to 151602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,705 DEBUG Processing 8/739 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,776 DEBUG Processing 50/753 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,904 DEBUG Processing 9/739 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,905 DEBUG Processing 505/862 atomic regions from SNP 151302 to 151902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,974 DEBUG Processing 51/753 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,106 DEBUG Processing 10/739 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,143 DEBUG Processing 506/862 atomic regions from SNP 151602 to 152202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,171 DEBUG Processing 52/753 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,309 DEBUG Processing 11/739 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,369 DEBUG Processing 53/753 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,377 DEBUG Processing 507/862 atomic regions from SNP 151902 to 152502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,513 DEBUG Processing 12/739 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,566 DEBUG Processing 54/753 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,610 DEBUG Processing 508/862 atomic regions from SNP 152202 to 152802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,715 DEBUG Processing 13/739 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,764 DEBUG Processing 55/753 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,820 DEBUG Processing 509/862 atomic regions from SNP 152502 to 153102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,913 DEBUG Processing 14/739 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,961 DEBUG Processing 56/753 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,030 DEBUG Processing 510/862 atomic regions from SNP 152802 to 153402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,113 DEBUG Processing 15/739 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,158 DEBUG Processing 57/753 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,256 DEBUG Processing 511/862 atomic regions from SNP 153102 to 153702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,314 DEBUG Processing 16/739 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,383 DEBUG Processing 58/753 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,493 DEBUG Processing 512/862 atomic regions from SNP 153402 to 154002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,518 DEBUG Processing 17/739 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,586 DEBUG Processing 59/753 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,720 DEBUG Processing 18/739 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,740 DEBUG Processing 513/862 atomic regions from SNP 153702 to 154302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,787 DEBUG Processing 60/753 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,921 DEBUG Processing 19/739 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,982 DEBUG Processing 514/862 atomic regions from SNP 154002 to 154602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,989 DEBUG Processing 61/753 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,122 DEBUG Processing 20/739 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,195 DEBUG Processing 62/753 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,223 DEBUG Processing 515/862 atomic regions from SNP 154302 to 154902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,322 DEBUG Processing 21/739 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,403 DEBUG Processing 63/753 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,475 DEBUG Processing 516/862 atomic regions from SNP 154602 to 155202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,523 DEBUG Processing 22/739 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,624 DEBUG Processing 64/753 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,724 DEBUG Processing 517/862 atomic regions from SNP 154902 to 155502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,725 DEBUG Processing 23/739 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,848 DEBUG Processing 65/753 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,927 DEBUG Processing 24/739 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,964 DEBUG Processing 518/862 atomic regions from SNP 155202 to 155802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,050 DEBUG Processing 66/753 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,127 DEBUG Processing 25/739 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,202 DEBUG Processing 519/862 atomic regions from SNP 155502 to 156102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,253 DEBUG Processing 67/753 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,328 DEBUG Processing 26/739 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,446 DEBUG Processing 520/862 atomic regions from SNP 155802 to 156402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,456 DEBUG Processing 68/753 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,530 DEBUG Processing 27/739 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,660 DEBUG Processing 69/753 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,685 DEBUG Processing 521/862 atomic regions from SNP 156102 to 156702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,731 DEBUG Processing 28/739 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,862 DEBUG Processing 70/753 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,928 DEBUG Processing 522/862 atomic regions from SNP 156402 to 157002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,935 DEBUG Processing 29/739 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,060 DEBUG Processing 71/753 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,137 DEBUG Processing 30/739 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,155 DEBUG Processing 523/862 atomic regions from SNP 156702 to 157302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,257 DEBUG Processing 72/753 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,340 DEBUG Processing 31/739 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,370 DEBUG Processing 524/862 atomic regions from SNP 157002 to 157602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,455 DEBUG Processing 73/753 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,541 DEBUG Processing 32/739 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,589 DEBUG Processing 525/862 atomic regions from SNP 157302 to 157902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,661 DEBUG Processing 74/753 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,738 DEBUG Processing 33/739 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,808 DEBUG Processing 526/862 atomic regions from SNP 157602 to 158202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,868 DEBUG Processing 75/753 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,937 DEBUG Processing 34/739 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,024 DEBUG Processing 527/862 atomic regions from SNP 157902 to 158502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,075 DEBUG Processing 76/753 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,135 DEBUG Processing 35/739 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,243 DEBUG Processing 528/862 atomic regions from SNP 158202 to 158802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,284 DEBUG Processing 77/753 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,335 DEBUG Processing 36/739 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,460 DEBUG Processing 529/862 atomic regions from SNP 158502 to 159102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,492 DEBUG Processing 78/753 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,534 DEBUG Processing 37/739 atomic regions from SNP 10836 to 11436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,680 DEBUG Processing 530/862 atomic regions from SNP 158802 to 159402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,699 DEBUG Processing 79/753 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,735 DEBUG Processing 38/739 atomic regions from SNP 11136 to 11736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,897 DEBUG Processing 531/862 atomic regions from SNP 159102 to 159702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,903 DEBUG Processing 80/753 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,939 DEBUG Processing 39/739 atomic regions from SNP 11436 to 12036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,108 DEBUG Processing 81/753 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,114 DEBUG Processing 532/862 atomic regions from SNP 159402 to 160002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,150 DEBUG Processing 40/739 atomic regions from SNP 11736 to 12336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,314 DEBUG Processing 82/753 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,331 DEBUG Processing 533/862 atomic regions from SNP 159702 to 160302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,349 DEBUG Processing 41/739 atomic regions from SNP 12036 to 12636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,521 DEBUG Processing 83/753 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,548 DEBUG Processing 42/739 atomic regions from SNP 12336 to 12936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,549 DEBUG Processing 534/862 atomic regions from SNP 160002 to 160602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,728 DEBUG Processing 84/753 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,748 DEBUG Processing 43/739 atomic regions from SNP 12636 to 13236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,767 DEBUG Processing 535/862 atomic regions from SNP 160302 to 160902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,934 DEBUG Processing 85/753 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,949 DEBUG Processing 44/739 atomic regions from SNP 12936 to 13536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,990 DEBUG Processing 536/862 atomic regions from SNP 160602 to 161202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,149 DEBUG Processing 45/739 atomic regions from SNP 13236 to 13836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,160 DEBUG Processing 86/753 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,208 DEBUG Processing 537/862 atomic regions from SNP 160902 to 161502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,359 DEBUG Processing 46/739 atomic regions from SNP 13536 to 14136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,370 DEBUG Processing 87/753 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,438 DEBUG Processing 538/862 atomic regions from SNP 161202 to 161802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,574 DEBUG Processing 88/753 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,584 DEBUG Processing 47/739 atomic regions from SNP 13836 to 14436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,675 DEBUG Processing 539/862 atomic regions from SNP 161502 to 162102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,778 DEBUG Processing 89/753 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,793 DEBUG Processing 48/739 atomic regions from SNP 14136 to 14736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,902 DEBUG Processing 540/862 atomic regions from SNP 161802 to 162402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,984 DEBUG Processing 90/753 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,005 DEBUG Processing 49/739 atomic regions from SNP 14436 to 15036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,136 DEBUG Processing 541/862 atomic regions from SNP 162102 to 162702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,195 DEBUG Processing 91/753 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,231 DEBUG Processing 50/739 atomic regions from SNP 14736 to 15336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,352 DEBUG Processing 542/862 atomic regions from SNP 162402 to 163002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,398 DEBUG Processing 92/753 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,458 DEBUG Processing 51/739 atomic regions from SNP 15036 to 15636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,567 DEBUG Processing 543/862 atomic regions from SNP 162702 to 163302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,600 DEBUG Processing 93/753 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,666 DEBUG Processing 52/739 atomic regions from SNP 15336 to 15936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,784 DEBUG Processing 544/862 atomic regions from SNP 163002 to 163602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,804 DEBUG Processing 94/753 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,864 DEBUG Processing 53/739 atomic regions from SNP 15636 to 16236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,000 DEBUG Processing 545/862 atomic regions from SNP 163302 to 163902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,010 DEBUG Processing 95/753 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,062 DEBUG Processing 54/739 atomic regions from SNP 15936 to 16536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,214 DEBUG Processing 96/753 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,220 DEBUG Processing 546/862 atomic regions from SNP 163602 to 164202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,257 DEBUG Processing 55/739 atomic regions from SNP 16236 to 16836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,418 DEBUG Processing 97/753 atomic regions from SNP 28896 to 29497 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,436 DEBUG Processing 547/862 atomic regions from SNP 163902 to 164502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,454 DEBUG Processing 56/739 atomic regions from SNP 16536 to 17136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,625 DEBUG Processing 98/753 atomic regions from SNP 29197 to 29798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,652 DEBUG Processing 548/862 atomic regions from SNP 164202 to 164802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,657 DEBUG Processing 57/739 atomic regions from SNP 16836 to 17436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,835 DEBUG Processing 99/753 atomic regions from SNP 29498 to 30099 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,863 DEBUG Processing 58/739 atomic regions from SNP 17136 to 17736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,867 DEBUG Processing 549/862 atomic regions from SNP 164502 to 165102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,059 DEBUG Processing 100/753 atomic regions from SNP 29799 to 30400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,079 DEBUG Processing 550/862 atomic regions from SNP 164802 to 165402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,082 DEBUG Processing 59/739 atomic regions from SNP 17436 to 18036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,279 DEBUG Processing 101/753 atomic regions from SNP 30100 to 30701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,293 DEBUG Processing 551/862 atomic regions from SNP 165102 to 165702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,311 DEBUG Processing 60/739 atomic regions from SNP 17736 to 18336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,514 DEBUG Processing 102/753 atomic regions from SNP 30401 to 31002 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,520 DEBUG Processing 552/862 atomic regions from SNP 165402 to 166002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,560 DEBUG Processing 61/739 atomic regions from SNP 18036 to 18636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,730 DEBUG Processing 103/753 atomic regions from SNP 30702 to 31303 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,745 DEBUG Processing 553/862 atomic regions from SNP 165702 to 166302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,790 DEBUG Processing 62/739 atomic regions from SNP 18336 to 18936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,942 DEBUG Processing 104/753 atomic regions from SNP 31003 to 31604 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,993 DEBUG Processing 554/862 atomic regions from SNP 166002 to 166602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,999 DEBUG Processing 63/739 atomic regions from SNP 18636 to 19236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,150 DEBUG Processing 105/753 atomic regions from SNP 31304 to 31905 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,207 DEBUG Processing 64/739 atomic regions from SNP 18936 to 19536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,220 DEBUG Processing 555/862 atomic regions from SNP 166302 to 166902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,361 DEBUG Processing 106/753 atomic regions from SNP 31605 to 32206 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,423 DEBUG Processing 65/739 atomic regions from SNP 19236 to 19836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,432 DEBUG Processing 556/862 atomic regions from SNP 166602 to 167202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,579 DEBUG Processing 107/753 atomic regions from SNP 31906 to 32507 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,622 DEBUG Processing 66/739 atomic regions from SNP 19536 to 20136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,648 DEBUG Processing 557/862 atomic regions from SNP 166902 to 167502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,801 DEBUG Processing 108/753 atomic regions from SNP 32207 to 32808 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,822 DEBUG Processing 67/739 atomic regions from SNP 19836 to 20436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,865 DEBUG Processing 558/862 atomic regions from SNP 167202 to 167802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,013 DEBUG Processing 109/753 atomic regions from SNP 32508 to 33109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,023 DEBUG Processing 68/739 atomic regions from SNP 20136 to 20736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,079 DEBUG Processing 559/862 atomic regions from SNP 167502 to 168102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,216 DEBUG Processing 110/753 atomic regions from SNP 32809 to 33410 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,225 DEBUG Processing 69/739 atomic regions from SNP 20436 to 21036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,296 DEBUG Processing 560/862 atomic regions from SNP 167802 to 168402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,422 DEBUG Processing 111/753 atomic regions from SNP 33110 to 33711 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,425 DEBUG Processing 70/739 atomic regions from SNP 20736 to 21336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,513 DEBUG Processing 561/862 atomic regions from SNP 168102 to 168702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,626 DEBUG Processing 112/753 atomic regions from SNP 33411 to 34012 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,652 DEBUG Processing 71/739 atomic regions from SNP 21036 to 21636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,730 DEBUG Processing 562/862 atomic regions from SNP 168402 to 169002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,827 DEBUG Processing 113/753 atomic regions from SNP 33712 to 34313 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,869 DEBUG Processing 72/739 atomic regions from SNP 21336 to 21936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,943 DEBUG Processing 563/862 atomic regions from SNP 168702 to 169302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,032 DEBUG Processing 114/753 atomic regions from SNP 34013 to 34614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,068 DEBUG Processing 73/739 atomic regions from SNP 21636 to 22236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,159 DEBUG Processing 564/862 atomic regions from SNP 169002 to 169602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,237 DEBUG Processing 115/753 atomic regions from SNP 34314 to 34915 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,271 DEBUG Processing 74/739 atomic regions from SNP 21936 to 22536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,375 DEBUG Processing 565/862 atomic regions from SNP 169302 to 169902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,441 DEBUG Processing 116/753 atomic regions from SNP 34615 to 35216 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,472 DEBUG Processing 75/739 atomic regions from SNP 22236 to 22836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,590 DEBUG Processing 566/862 atomic regions from SNP 169602 to 170202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,644 DEBUG Processing 117/753 atomic regions from SNP 34916 to 35517 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,672 DEBUG Processing 76/739 atomic regions from SNP 22536 to 23136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,803 DEBUG Processing 567/862 atomic regions from SNP 169902 to 170502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,845 DEBUG Processing 118/753 atomic regions from SNP 35217 to 35818 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,874 DEBUG Processing 77/739 atomic regions from SNP 22836 to 23436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,020 DEBUG Processing 568/862 atomic regions from SNP 170202 to 170802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,050 DEBUG Processing 119/753 atomic regions from SNP 35518 to 36119 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,073 DEBUG Processing 78/739 atomic regions from SNP 23136 to 23736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,236 DEBUG Processing 569/862 atomic regions from SNP 170502 to 171102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,255 DEBUG Processing 120/753 atomic regions from SNP 35819 to 36420 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,271 DEBUG Processing 79/739 atomic regions from SNP 23436 to 24036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,455 DEBUG Processing 570/862 atomic regions from SNP 170802 to 171402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,460 DEBUG Processing 121/753 atomic regions from SNP 36120 to 36721 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,472 DEBUG Processing 80/739 atomic regions from SNP 23736 to 24336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,669 DEBUG Processing 122/753 atomic regions from SNP 36421 to 37022 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,670 DEBUG Processing 571/862 atomic regions from SNP 171102 to 171702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,672 DEBUG Processing 81/739 atomic regions from SNP 24036 to 24636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,870 DEBUG Processing 123/753 atomic regions from SNP 36722 to 37323 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,871 DEBUG Processing 82/739 atomic regions from SNP 24336 to 24936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,884 DEBUG Processing 572/862 atomic regions from SNP 171402 to 172002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,071 DEBUG Processing 83/739 atomic regions from SNP 24636 to 25236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,075 DEBUG Processing 124/753 atomic regions from SNP 37023 to 37624 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,116 DEBUG Processing 573/862 atomic regions from SNP 171702 to 172302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,270 DEBUG Processing 84/739 atomic regions from SNP 24936 to 25536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,275 DEBUG Processing 125/753 atomic regions from SNP 37324 to 37925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,337 DEBUG Processing 574/862 atomic regions from SNP 172002 to 172602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,468 DEBUG Processing 85/739 atomic regions from SNP 25236 to 25836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,474 DEBUG Processing 126/753 atomic regions from SNP 37625 to 38226 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,552 DEBUG Processing 575/862 atomic regions from SNP 172302 to 172902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,673 DEBUG Processing 86/739 atomic regions from SNP 25536 to 26136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,681 DEBUG Processing 127/753 atomic regions from SNP 37926 to 38527 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,767 DEBUG Processing 576/862 atomic regions from SNP 172602 to 173202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,874 DEBUG Processing 87/739 atomic regions from SNP 25836 to 26436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,901 DEBUG Processing 128/753 atomic regions from SNP 38227 to 38828 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,979 DEBUG Processing 577/862 atomic regions from SNP 172902 to 173502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,074 DEBUG Processing 88/739 atomic regions from SNP 26136 to 26736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,107 DEBUG Processing 129/753 atomic regions from SNP 38528 to 39129 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,190 DEBUG Processing 578/862 atomic regions from SNP 173202 to 173802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,274 DEBUG Processing 89/739 atomic regions from SNP 26436 to 27036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,312 DEBUG Processing 130/753 atomic regions from SNP 38829 to 39430 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,401 DEBUG Processing 579/862 atomic regions from SNP 173502 to 174102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,473 DEBUG Processing 90/739 atomic regions from SNP 26736 to 27336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,512 DEBUG Processing 131/753 atomic regions from SNP 39130 to 39731 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,611 DEBUG Processing 580/862 atomic regions from SNP 173802 to 174402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,673 DEBUG Processing 91/739 atomic regions from SNP 27036 to 27636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,716 DEBUG Processing 132/753 atomic regions from SNP 39431 to 40032 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,823 DEBUG Processing 581/862 atomic regions from SNP 174102 to 174702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,873 DEBUG Processing 92/739 atomic regions from SNP 27336 to 27936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,923 DEBUG Processing 133/753 atomic regions from SNP 39732 to 40333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,038 DEBUG Processing 582/862 atomic regions from SNP 174402 to 175002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,084 DEBUG Processing 93/739 atomic regions from SNP 27636 to 28236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,126 DEBUG Processing 134/753 atomic regions from SNP 40033 to 40633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,252 DEBUG Processing 583/862 atomic regions from SNP 174702 to 175302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,303 DEBUG Processing 94/739 atomic regions from SNP 27936 to 28536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,328 DEBUG Processing 135/753 atomic regions from SNP 40333 to 40933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,470 DEBUG Processing 584/862 atomic regions from SNP 175002 to 175602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,508 DEBUG Processing 95/739 atomic regions from SNP 28236 to 28836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,529 DEBUG Processing 136/753 atomic regions from SNP 40633 to 41233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,687 DEBUG Processing 585/862 atomic regions from SNP 175302 to 175902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,712 DEBUG Processing 96/739 atomic regions from SNP 28536 to 29136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,732 DEBUG Processing 137/753 atomic regions from SNP 40933 to 41533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,905 DEBUG Processing 586/862 atomic regions from SNP 175602 to 176202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,916 DEBUG Processing 97/739 atomic regions from SNP 28836 to 29436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,934 DEBUG Processing 138/753 atomic regions from SNP 41233 to 41833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,116 DEBUG Processing 98/739 atomic regions from SNP 29136 to 29736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,122 DEBUG Processing 587/862 atomic regions from SNP 175902 to 176502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,136 DEBUG Processing 139/753 atomic regions from SNP 41533 to 42133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,318 DEBUG Processing 99/739 atomic regions from SNP 29436 to 30036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,340 DEBUG Processing 140/753 atomic regions from SNP 41833 to 42433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,341 DEBUG Processing 588/862 atomic regions from SNP 176202 to 176802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,523 DEBUG Processing 100/739 atomic regions from SNP 29736 to 30336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,547 DEBUG Processing 141/753 atomic regions from SNP 42133 to 42733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,558 DEBUG Processing 589/862 atomic regions from SNP 176502 to 177102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,727 DEBUG Processing 101/739 atomic regions from SNP 30036 to 30636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,756 DEBUG Processing 142/753 atomic regions from SNP 42433 to 43033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,776 DEBUG Segmenting atomic regions: 2025-01-31 09:50:31,778 DEBUG Processing 590/862 atomic regions from SNP 176802 to 177402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,878 DEBUG Processing 1/708 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,930 DEBUG Processing 102/739 atomic regions from SNP 30336 to 30936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,965 DEBUG Processing 143/753 atomic regions from SNP 42733 to 43333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,999 DEBUG Processing 591/862 atomic regions from SNP 177102 to 177702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,082 DEBUG Processing 2/708 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,155 DEBUG Processing 103/739 atomic regions from SNP 30636 to 31236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,174 DEBUG Processing 144/753 atomic regions from SNP 43033 to 43633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,222 DEBUG Processing 592/862 atomic regions from SNP 177402 to 178002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,287 DEBUG Processing 3/708 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,382 DEBUG Processing 104/739 atomic regions from SNP 30936 to 31536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,383 DEBUG Processing 145/753 atomic regions from SNP 43333 to 43933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,445 DEBUG Processing 593/862 atomic regions from SNP 177702 to 178302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,492 DEBUG Processing 4/708 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,590 DEBUG Processing 146/753 atomic regions from SNP 43633 to 44233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,605 DEBUG Processing 105/739 atomic regions from SNP 31236 to 31836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,666 DEBUG Processing 594/862 atomic regions from SNP 178002 to 178602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,694 DEBUG Processing 5/708 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,798 DEBUG Processing 147/753 atomic regions from SNP 43933 to 44533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,828 DEBUG Processing 106/739 atomic regions from SNP 31536 to 32136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,886 DEBUG Processing 595/862 atomic regions from SNP 178302 to 178902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,917 DEBUG Processing 6/708 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,003 DEBUG Processing 148/753 atomic regions from SNP 44233 to 44833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,047 DEBUG Processing 107/739 atomic regions from SNP 31836 to 32436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,106 DEBUG Processing 596/862 atomic regions from SNP 178602 to 179202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,157 DEBUG Processing 7/708 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,208 DEBUG Processing 149/753 atomic regions from SNP 44533 to 45133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,264 DEBUG Processing 108/739 atomic regions from SNP 32136 to 32736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,325 DEBUG Processing 597/862 atomic regions from SNP 178902 to 179502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,391 DEBUG Processing 8/708 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,412 DEBUG Processing 150/753 atomic regions from SNP 44833 to 45433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,490 DEBUG Processing 109/739 atomic regions from SNP 32436 to 33036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,544 DEBUG Processing 598/862 atomic regions from SNP 179202 to 179802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,616 DEBUG Processing 9/708 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,618 DEBUG Processing 151/753 atomic regions from SNP 45133 to 45733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,720 DEBUG Processing 110/739 atomic regions from SNP 32736 to 33336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,763 DEBUG Processing 599/862 atomic regions from SNP 179502 to 180102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,824 DEBUG Processing 152/753 atomic regions from SNP 45433 to 46033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,855 DEBUG Processing 10/708 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,938 DEBUG Processing 111/739 atomic regions from SNP 33036 to 33636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,984 DEBUG Processing 600/862 atomic regions from SNP 179802 to 180402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,028 DEBUG Processing 153/753 atomic regions from SNP 45733 to 46333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,092 DEBUG Processing 11/708 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,139 DEBUG Processing 112/739 atomic regions from SNP 33336 to 33936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,203 DEBUG Processing 601/862 atomic regions from SNP 180102 to 180702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,233 DEBUG Processing 154/753 atomic regions from SNP 46033 to 46633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,325 DEBUG Processing 12/708 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,338 DEBUG Processing 113/739 atomic regions from SNP 33636 to 34236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,424 DEBUG Processing 602/862 atomic regions from SNP 180402 to 181002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,440 DEBUG Processing 155/753 atomic regions from SNP 46333 to 46933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,536 DEBUG Processing 114/739 atomic regions from SNP 33936 to 34536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,553 DEBUG Processing 13/708 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,647 DEBUG Processing 603/862 atomic regions from SNP 180702 to 181302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,651 DEBUG Processing 156/753 atomic regions from SNP 46633 to 47233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,732 DEBUG Processing 115/739 atomic regions from SNP 34236 to 34836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,780 DEBUG Processing 14/708 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,862 DEBUG Processing 157/753 atomic regions from SNP 46933 to 47533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,872 DEBUG Processing 604/862 atomic regions from SNP 181002 to 181602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,930 DEBUG Processing 116/739 atomic regions from SNP 34536 to 35136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,012 DEBUG Processing 15/708 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,076 DEBUG Processing 158/753 atomic regions from SNP 47233 to 47833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,096 DEBUG Processing 605/862 atomic regions from SNP 181302 to 181902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,130 DEBUG Processing 117/739 atomic regions from SNP 34836 to 35436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,222 DEBUG Processing 16/708 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,288 DEBUG Processing 159/753 atomic regions from SNP 47533 to 48133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,319 DEBUG Processing 606/862 atomic regions from SNP 181602 to 182202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,330 DEBUG Processing 118/739 atomic regions from SNP 35136 to 35736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,426 DEBUG Processing 17/708 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,499 DEBUG Processing 160/753 atomic regions from SNP 47833 to 48433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,532 DEBUG Processing 119/739 atomic regions from SNP 35436 to 36036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,541 DEBUG Processing 607/862 atomic regions from SNP 181902 to 182502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,626 DEBUG Processing 18/708 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,705 DEBUG Processing 161/753 atomic regions from SNP 48133 to 48733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,733 DEBUG Processing 120/739 atomic regions from SNP 35736 to 36336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,760 DEBUG Processing 608/862 atomic regions from SNP 182202 to 182802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,829 DEBUG Processing 19/708 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,910 DEBUG Processing 162/753 atomic regions from SNP 48433 to 49033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,933 DEBUG Processing 121/739 atomic regions from SNP 36036 to 36636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,978 DEBUG Processing 609/862 atomic regions from SNP 182502 to 183102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,034 DEBUG Processing 20/708 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,119 DEBUG Processing 163/753 atomic regions from SNP 48733 to 49333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,135 DEBUG Processing 122/739 atomic regions from SNP 36336 to 36936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,197 DEBUG Processing 610/862 atomic regions from SNP 182802 to 183402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,238 DEBUG Processing 21/708 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,321 DEBUG Processing 164/753 atomic regions from SNP 49033 to 49633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,338 DEBUG Processing 123/739 atomic regions from SNP 36636 to 37236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,414 DEBUG Processing 611/862 atomic regions from SNP 183102 to 183702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,475 DEBUG Processing 22/708 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,526 DEBUG Processing 165/753 atomic regions from SNP 49333 to 49933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,548 DEBUG Processing 124/739 atomic regions from SNP 36936 to 37536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,627 DEBUG Processing 612/862 atomic regions from SNP 183402 to 184002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,716 DEBUG Processing 23/708 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,733 DEBUG Processing 166/753 atomic regions from SNP 49633 to 50233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,782 DEBUG Processing 125/739 atomic regions from SNP 37236 to 37836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,842 DEBUG Processing 613/862 atomic regions from SNP 183702 to 184302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,945 DEBUG Processing 167/753 atomic regions from SNP 49933 to 50533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,956 DEBUG Processing 24/708 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,012 DEBUG Processing 126/739 atomic regions from SNP 37536 to 38136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,057 DEBUG Processing 614/862 atomic regions from SNP 184002 to 184602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,159 DEBUG Processing 168/753 atomic regions from SNP 50233 to 50833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,197 DEBUG Processing 25/708 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,234 DEBUG Processing 127/739 atomic regions from SNP 37836 to 38436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,272 DEBUG Processing 615/862 atomic regions from SNP 184302 to 184902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,373 DEBUG Processing 169/753 atomic regions from SNP 50533 to 51133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,423 DEBUG Processing 26/708 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,468 DEBUG Processing 128/739 atomic regions from SNP 38136 to 38736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,486 DEBUG Processing 616/862 atomic regions from SNP 184602 to 185202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,579 DEBUG Processing 170/753 atomic regions from SNP 50833 to 51433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,630 DEBUG Processing 27/708 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,694 DEBUG Processing 129/739 atomic regions from SNP 38436 to 39036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,703 DEBUG Processing 617/862 atomic regions from SNP 184902 to 185502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,787 DEBUG Processing 171/753 atomic regions from SNP 51133 to 51733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,859 DEBUG Processing 28/708 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,898 DEBUG Processing 130/739 atomic regions from SNP 38736 to 39336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,920 DEBUG Processing 618/862 atomic regions from SNP 185202 to 185802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,991 DEBUG Processing 172/753 atomic regions from SNP 51433 to 52033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,088 DEBUG Processing 29/708 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,101 DEBUG Processing 131/739 atomic regions from SNP 39036 to 39636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,138 DEBUG Processing 619/862 atomic regions from SNP 185502 to 186102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,194 DEBUG Processing 173/753 atomic regions from SNP 51733 to 52333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,302 DEBUG Processing 132/739 atomic regions from SNP 39336 to 39936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,322 DEBUG Processing 30/708 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,357 DEBUG Processing 620/862 atomic regions from SNP 185802 to 186402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,397 DEBUG Processing 174/753 atomic regions from SNP 52033 to 52633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,519 DEBUG Processing 133/739 atomic regions from SNP 39636 to 40236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,553 DEBUG Processing 31/708 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,575 DEBUG Processing 621/862 atomic regions from SNP 186102 to 186702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,602 DEBUG Processing 175/753 atomic regions from SNP 52333 to 52933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,752 DEBUG Processing 134/739 atomic regions from SNP 39936 to 40536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,785 DEBUG Processing 32/708 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,795 DEBUG Processing 622/862 atomic regions from SNP 186402 to 187002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,811 DEBUG Processing 176/753 atomic regions from SNP 52633 to 53233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,993 DEBUG Processing 135/739 atomic regions from SNP 40236 to 40836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,020 DEBUG Processing 177/753 atomic regions from SNP 52933 to 53533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,021 DEBUG Processing 623/862 atomic regions from SNP 186702 to 187302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,028 DEBUG Processing 33/708 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,215 DEBUG Processing 136/739 atomic regions from SNP 40536 to 41136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,231 DEBUG Processing 178/753 atomic regions from SNP 53233 to 53833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,244 DEBUG Processing 624/862 atomic regions from SNP 187002 to 187602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,275 DEBUG Processing 34/708 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,419 DEBUG Processing 137/739 atomic regions from SNP 40836 to 41436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,438 DEBUG Processing 179/753 atomic regions from SNP 53533 to 54133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,466 DEBUG Processing 625/862 atomic regions from SNP 187302 to 187902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,519 DEBUG Processing 35/708 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,622 DEBUG Processing 138/739 atomic regions from SNP 41136 to 41736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,644 DEBUG Processing 180/753 atomic regions from SNP 53833 to 54433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,685 DEBUG Processing 626/862 atomic regions from SNP 187602 to 188202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,749 DEBUG Processing 36/708 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,826 DEBUG Processing 139/739 atomic regions from SNP 41436 to 42036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,847 DEBUG Processing 181/753 atomic regions from SNP 54133 to 54733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,902 DEBUG Processing 627/862 atomic regions from SNP 187902 to 188502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,964 DEBUG Processing 37/708 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,031 DEBUG Processing 140/739 atomic regions from SNP 41736 to 42336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,050 DEBUG Processing 182/753 atomic regions from SNP 54433 to 55033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,115 DEBUG Processing 628/862 atomic regions from SNP 188202 to 188802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,171 DEBUG Processing 38/708 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,235 DEBUG Processing 141/739 atomic regions from SNP 42036 to 42636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,253 DEBUG Processing 183/753 atomic regions from SNP 54733 to 55333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,332 DEBUG Processing 629/862 atomic regions from SNP 188502 to 189102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,388 DEBUG Processing 39/708 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,437 DEBUG Processing 142/739 atomic regions from SNP 42336 to 42936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,456 DEBUG Processing 184/753 atomic regions from SNP 55033 to 55633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,547 DEBUG Processing 630/862 atomic regions from SNP 188802 to 189402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,618 DEBUG Processing 40/708 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,639 DEBUG Processing 143/739 atomic regions from SNP 42636 to 43236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,659 DEBUG Processing 185/753 atomic regions from SNP 55333 to 55933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,762 DEBUG Processing 631/862 atomic regions from SNP 189102 to 189702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,840 DEBUG Processing 144/739 atomic regions from SNP 42936 to 43536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,857 DEBUG Processing 41/708 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,861 DEBUG Processing 186/753 atomic regions from SNP 55633 to 56233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,979 DEBUG Processing 632/862 atomic regions from SNP 189402 to 190002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,041 DEBUG Processing 145/739 atomic regions from SNP 43236 to 43836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,062 DEBUG Processing 187/753 atomic regions from SNP 55933 to 56533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,092 DEBUG Processing 42/708 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,192 DEBUG Processing 633/862 atomic regions from SNP 189702 to 190302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,243 DEBUG Processing 146/739 atomic regions from SNP 43536 to 44136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,263 DEBUG Processing 188/753 atomic regions from SNP 56233 to 56833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,327 DEBUG Processing 43/708 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,407 DEBUG Processing 634/862 atomic regions from SNP 190002 to 190602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,444 DEBUG Processing 147/739 atomic regions from SNP 43836 to 44436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,463 DEBUG Processing 189/753 atomic regions from SNP 56533 to 57133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,561 DEBUG Processing 44/708 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,623 DEBUG Processing 635/862 atomic regions from SNP 190302 to 190902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,645 DEBUG Processing 148/739 atomic regions from SNP 44136 to 44736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,663 DEBUG Processing 190/753 atomic regions from SNP 56833 to 57433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,788 DEBUG Processing 45/708 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,841 DEBUG Processing 636/862 atomic regions from SNP 190602 to 191202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,847 DEBUG Processing 149/739 atomic regions from SNP 44436 to 45036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,864 DEBUG Processing 191/753 atomic regions from SNP 57133 to 57733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,008 DEBUG Processing 46/708 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,053 DEBUG Processing 150/739 atomic regions from SNP 44736 to 45336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,060 DEBUG Processing 637/862 atomic regions from SNP 190902 to 191502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,067 DEBUG Processing 192/753 atomic regions from SNP 57433 to 58033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,211 DEBUG Processing 47/708 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,256 DEBUG Processing 151/739 atomic regions from SNP 45036 to 45636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,270 DEBUG Processing 193/753 atomic regions from SNP 57733 to 58333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,287 DEBUG Processing 638/862 atomic regions from SNP 191202 to 191802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,416 DEBUG Processing 48/708 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,460 DEBUG Processing 152/739 atomic regions from SNP 45336 to 45936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,473 DEBUG Processing 194/753 atomic regions from SNP 58033 to 58633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,502 DEBUG Processing 639/862 atomic regions from SNP 191502 to 192102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,619 DEBUG Processing 49/708 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,662 DEBUG Processing 153/739 atomic regions from SNP 45636 to 46236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,676 DEBUG Processing 195/753 atomic regions from SNP 58333 to 58933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,717 DEBUG Processing 640/862 atomic regions from SNP 191802 to 192402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,822 DEBUG Processing 50/708 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,865 DEBUG Processing 154/739 atomic regions from SNP 45936 to 46536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,879 DEBUG Processing 196/753 atomic regions from SNP 58633 to 59233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,930 DEBUG Processing 641/862 atomic regions from SNP 192102 to 192702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,024 DEBUG Processing 51/708 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,066 DEBUG Processing 155/739 atomic regions from SNP 46236 to 46836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,081 DEBUG Processing 197/753 atomic regions from SNP 58933 to 59533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,143 DEBUG Processing 642/862 atomic regions from SNP 192402 to 193002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,227 DEBUG Processing 52/708 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,269 DEBUG Processing 156/739 atomic regions from SNP 46536 to 47136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,283 DEBUG Processing 198/753 atomic regions from SNP 59233 to 59833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,356 DEBUG Processing 643/862 atomic regions from SNP 192702 to 193302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,432 DEBUG Processing 53/708 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,476 DEBUG Processing 157/739 atomic regions from SNP 46836 to 47436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,484 DEBUG Processing 199/753 atomic regions from SNP 59533 to 60133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,571 DEBUG Processing 644/862 atomic regions from SNP 193002 to 193602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,636 DEBUG Processing 54/708 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,678 DEBUG Processing 158/739 atomic regions from SNP 47136 to 47736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,683 DEBUG Processing 200/753 atomic regions from SNP 59833 to 60433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,782 DEBUG Processing 645/862 atomic regions from SNP 193302 to 193902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,857 DEBUG Processing 55/708 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,878 DEBUG Processing 159/739 atomic regions from SNP 47436 to 48036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,890 DEBUG Processing 201/753 atomic regions from SNP 60133 to 60733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,007 DEBUG Processing 646/862 atomic regions from SNP 193602 to 194202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,083 DEBUG Processing 160/739 atomic regions from SNP 47736 to 48336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,086 DEBUG Processing 56/708 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,093 DEBUG Processing 202/753 atomic regions from SNP 60433 to 61033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,245 DEBUG Processing 647/862 atomic regions from SNP 193902 to 194502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,284 DEBUG Processing 161/739 atomic regions from SNP 48036 to 48636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,296 DEBUG Processing 57/708 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,301 DEBUG Processing 203/753 atomic regions from SNP 60733 to 61333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,486 DEBUG Processing 162/739 atomic regions from SNP 48336 to 48936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,498 DEBUG Processing 648/862 atomic regions from SNP 194202 to 194802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,506 DEBUG Processing 58/708 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,511 DEBUG Processing 204/753 atomic regions from SNP 61033 to 61633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,687 DEBUG Processing 163/739 atomic regions from SNP 48636 to 49236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,717 DEBUG Processing 59/708 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,719 DEBUG Processing 205/753 atomic regions from SNP 61333 to 61933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,744 DEBUG Processing 649/862 atomic regions from SNP 194502 to 195102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,891 DEBUG Processing 164/739 atomic regions from SNP 48936 to 49536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,927 DEBUG Processing 206/753 atomic regions from SNP 61633 to 62233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,929 DEBUG Processing 60/708 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,999 DEBUG Processing 650/862 atomic regions from SNP 194802 to 195402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,092 DEBUG Processing 165/739 atomic regions from SNP 49236 to 49836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,131 DEBUG Processing 207/753 atomic regions from SNP 61933 to 62533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,144 DEBUG Processing 61/708 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,244 DEBUG Processing 651/862 atomic regions from SNP 195102 to 195702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,294 DEBUG Processing 166/739 atomic regions from SNP 49536 to 50136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,334 DEBUG Processing 208/753 atomic regions from SNP 62233 to 62833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,379 DEBUG Processing 62/708 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,495 DEBUG Processing 652/862 atomic regions from SNP 195402 to 196002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,496 DEBUG Processing 167/739 atomic regions from SNP 49836 to 50436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,538 DEBUG Processing 209/753 atomic regions from SNP 62533 to 63133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,607 DEBUG Processing 63/708 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,698 DEBUG Processing 168/739 atomic regions from SNP 50136 to 50736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,733 DEBUG Processing 653/862 atomic regions from SNP 195702 to 196302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,741 DEBUG Processing 210/753 atomic regions from SNP 62833 to 63433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,834 DEBUG Processing 64/708 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,900 DEBUG Processing 169/739 atomic regions from SNP 50436 to 51036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,947 DEBUG Processing 211/753 atomic regions from SNP 63133 to 63733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,953 DEBUG Processing 654/862 atomic regions from SNP 196002 to 196602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,045 DEBUG Processing 65/708 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,104 DEBUG Processing 170/739 atomic regions from SNP 50736 to 51336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,153 DEBUG Processing 212/753 atomic regions from SNP 63433 to 64033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,171 DEBUG Processing 655/862 atomic regions from SNP 196302 to 196902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,244 DEBUG Processing 66/708 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,305 DEBUG Processing 171/739 atomic regions from SNP 51036 to 51636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,359 DEBUG Processing 213/753 atomic regions from SNP 63733 to 64333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,389 DEBUG Processing 656/862 atomic regions from SNP 196602 to 197202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,441 DEBUG Processing 67/708 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,527 DEBUG Processing 172/739 atomic regions from SNP 51336 to 51936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,571 DEBUG Processing 214/753 atomic regions from SNP 64033 to 64633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,612 DEBUG Processing 657/862 atomic regions from SNP 196902 to 197502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,643 DEBUG Processing 68/708 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,749 DEBUG Processing 173/739 atomic regions from SNP 51636 to 52236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,788 DEBUG Processing 215/753 atomic regions from SNP 64333 to 64933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,844 DEBUG Processing 658/862 atomic regions from SNP 197202 to 197802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,845 DEBUG Processing 69/708 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,971 DEBUG Processing 174/739 atomic regions from SNP 51936 to 52536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,002 DEBUG Processing 216/753 atomic regions from SNP 64633 to 65233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,051 DEBUG Processing 70/708 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,086 DEBUG Processing 659/862 atomic regions from SNP 197502 to 198102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,200 DEBUG Processing 175/739 atomic regions from SNP 52236 to 52836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,219 DEBUG Processing 217/753 atomic regions from SNP 64933 to 65533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,256 DEBUG Processing 71/708 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,321 DEBUG Processing 660/862 atomic regions from SNP 197802 to 198402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,402 DEBUG Processing 176/739 atomic regions from SNP 52536 to 53136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,450 DEBUG Processing 218/753 atomic regions from SNP 65233 to 65833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,458 DEBUG Processing 72/708 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,537 DEBUG Processing 661/862 atomic regions from SNP 198102 to 198702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,601 DEBUG Processing 177/739 atomic regions from SNP 52836 to 53436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,662 DEBUG Processing 73/708 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,693 DEBUG Processing 219/753 atomic regions from SNP 65533 to 66133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,758 DEBUG Processing 662/862 atomic regions from SNP 198402 to 199002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,800 DEBUG Processing 178/739 atomic regions from SNP 53136 to 53736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,868 DEBUG Processing 74/708 atomic regions from SNP 21973 to 22574 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,920 DEBUG Processing 220/753 atomic regions from SNP 65833 to 66433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,000 DEBUG Processing 179/739 atomic regions from SNP 53436 to 54036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,007 DEBUG Processing 663/862 atomic regions from SNP 198702 to 199302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,073 DEBUG Processing 75/708 atomic regions from SNP 22274 to 22875 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,132 DEBUG Processing 221/753 atomic regions from SNP 66133 to 66733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,200 DEBUG Processing 180/739 atomic regions from SNP 53736 to 54336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,262 DEBUG Processing 664/862 atomic regions from SNP 199002 to 199602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,281 DEBUG Processing 76/708 atomic regions from SNP 22575 to 23176 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,339 DEBUG Processing 222/753 atomic regions from SNP 66433 to 67033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,400 DEBUG Processing 181/739 atomic regions from SNP 54036 to 54636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,486 DEBUG Processing 77/708 atomic regions from SNP 22876 to 23477 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,516 DEBUG Processing 665/862 atomic regions from SNP 199302 to 199902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,548 DEBUG Processing 223/753 atomic regions from SNP 66733 to 67333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,597 DEBUG Processing 182/739 atomic regions from SNP 54336 to 54936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,693 DEBUG Processing 78/708 atomic regions from SNP 23177 to 23778 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,763 DEBUG Processing 224/753 atomic regions from SNP 67033 to 67633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,774 DEBUG Processing 666/862 atomic regions from SNP 199602 to 200202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,799 DEBUG Processing 183/739 atomic regions from SNP 54636 to 55236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,911 DEBUG Processing 79/708 atomic regions from SNP 23478 to 24079 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,979 DEBUG Processing 225/753 atomic regions from SNP 67333 to 67933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,996 DEBUG Processing 667/862 atomic regions from SNP 199902 to 200502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,020 DEBUG Processing 184/739 atomic regions from SNP 54936 to 55536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,144 DEBUG Processing 80/708 atomic regions from SNP 23779 to 24380 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,208 DEBUG Processing 226/753 atomic regions from SNP 67633 to 68233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,223 DEBUG Processing 185/739 atomic regions from SNP 55236 to 55836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,231 DEBUG Processing 668/862 atomic regions from SNP 200202 to 200802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,352 DEBUG Processing 81/708 atomic regions from SNP 24080 to 24681 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,424 DEBUG Processing 186/739 atomic regions from SNP 55536 to 56136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,443 DEBUG Processing 227/753 atomic regions from SNP 67933 to 68533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,456 DEBUG Processing 669/862 atomic regions from SNP 200502 to 201102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,559 DEBUG Processing 82/708 atomic regions from SNP 24381 to 24982 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,626 DEBUG Processing 187/739 atomic regions from SNP 55836 to 56436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,668 DEBUG Processing 228/753 atomic regions from SNP 68233 to 68833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,681 DEBUG Processing 670/862 atomic regions from SNP 200802 to 201402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,764 DEBUG Processing 83/708 atomic regions from SNP 24682 to 25283 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,833 DEBUG Processing 188/739 atomic regions from SNP 56136 to 56736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,902 DEBUG Processing 229/753 atomic regions from SNP 68533 to 69133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,905 DEBUG Processing 671/862 atomic regions from SNP 201102 to 201702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,974 DEBUG Processing 84/708 atomic regions from SNP 24983 to 25584 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,040 DEBUG Processing 189/739 atomic regions from SNP 56436 to 57036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,132 DEBUG Processing 672/862 atomic regions from SNP 201402 to 202002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,140 DEBUG Processing 230/753 atomic regions from SNP 68833 to 69433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,187 DEBUG Processing 85/708 atomic regions from SNP 25284 to 25885 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,237 DEBUG Processing 190/739 atomic regions from SNP 56736 to 57336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,360 DEBUG Processing 673/862 atomic regions from SNP 201702 to 202302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,389 DEBUG Processing 231/753 atomic regions from SNP 69133 to 69733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,402 DEBUG Processing 86/708 atomic regions from SNP 25585 to 26186 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,436 DEBUG Processing 191/739 atomic regions from SNP 57036 to 57636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,589 DEBUG Processing 674/862 atomic regions from SNP 202002 to 202602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,621 DEBUG Processing 87/708 atomic regions from SNP 25886 to 26487 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,633 DEBUG Processing 232/753 atomic regions from SNP 69433 to 70033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,637 DEBUG Processing 192/739 atomic regions from SNP 57336 to 57936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,818 DEBUG Processing 675/862 atomic regions from SNP 202302 to 202902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,837 DEBUG Processing 193/739 atomic regions from SNP 57636 to 58236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,839 DEBUG Processing 88/708 atomic regions from SNP 26187 to 26788 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,878 DEBUG Processing 233/753 atomic regions from SNP 69733 to 70333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,041 DEBUG Processing 194/739 atomic regions from SNP 57936 to 58536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,049 DEBUG Processing 676/862 atomic regions from SNP 202602 to 203202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,052 DEBUG Processing 89/708 atomic regions from SNP 26488 to 27089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,117 DEBUG Processing 234/753 atomic regions from SNP 70033 to 70633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,242 DEBUG Processing 195/739 atomic regions from SNP 58236 to 58836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,264 DEBUG Processing 90/708 atomic regions from SNP 26789 to 27389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,311 DEBUG Processing 677/862 atomic regions from SNP 202902 to 203502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,339 DEBUG Processing 235/753 atomic regions from SNP 70333 to 70933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,441 DEBUG Processing 196/739 atomic regions from SNP 58536 to 59136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,471 DEBUG Processing 91/708 atomic regions from SNP 27089 to 27689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,556 DEBUG Processing 678/862 atomic regions from SNP 203202 to 203802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,565 DEBUG Processing 236/753 atomic regions from SNP 70633 to 71233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,640 DEBUG Processing 197/739 atomic regions from SNP 58836 to 59436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,676 DEBUG Processing 92/708 atomic regions from SNP 27389 to 27989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,778 DEBUG Processing 237/753 atomic regions from SNP 70933 to 71533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,794 DEBUG Processing 679/862 atomic regions from SNP 203502 to 204102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,839 DEBUG Processing 198/739 atomic regions from SNP 59136 to 59736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,880 DEBUG Processing 93/708 atomic regions from SNP 27689 to 28289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,993 DEBUG Processing 238/753 atomic regions from SNP 71233 to 71833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,020 DEBUG Processing 680/862 atomic regions from SNP 203802 to 204402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,040 DEBUG Processing 199/739 atomic regions from SNP 59436 to 60036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,085 DEBUG Processing 94/708 atomic regions from SNP 27989 to 28589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,238 DEBUG Processing 239/753 atomic regions from SNP 71533 to 72133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,241 DEBUG Processing 200/739 atomic regions from SNP 59736 to 60336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,250 DEBUG Processing 681/862 atomic regions from SNP 204102 to 204702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,293 DEBUG Processing 95/708 atomic regions from SNP 28289 to 28889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,442 DEBUG Processing 201/739 atomic regions from SNP 60036 to 60636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,472 DEBUG Processing 682/862 atomic regions from SNP 204402 to 205002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,475 DEBUG Processing 240/753 atomic regions from SNP 71833 to 72433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,499 DEBUG Processing 96/708 atomic regions from SNP 28589 to 29189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,642 DEBUG Processing 202/739 atomic regions from SNP 60336 to 60936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,695 DEBUG Processing 683/862 atomic regions from SNP 204702 to 205302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,698 DEBUG Processing 241/753 atomic regions from SNP 72133 to 72733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,712 DEBUG Processing 97/708 atomic regions from SNP 28889 to 29489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,841 DEBUG Processing 203/739 atomic regions from SNP 60636 to 61236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,918 DEBUG Processing 684/862 atomic regions from SNP 205002 to 205602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,923 DEBUG Processing 242/753 atomic regions from SNP 72433 to 73033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,926 DEBUG Processing 98/708 atomic regions from SNP 29189 to 29789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,041 DEBUG Processing 204/739 atomic regions from SNP 60936 to 61536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,137 DEBUG Processing 243/753 atomic regions from SNP 72733 to 73333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,138 DEBUG Processing 99/708 atomic regions from SNP 29489 to 30089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,164 DEBUG Processing 685/862 atomic regions from SNP 205302 to 205902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,240 DEBUG Processing 205/739 atomic regions from SNP 61236 to 61836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,350 DEBUG Processing 100/708 atomic regions from SNP 29789 to 30389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,353 DEBUG Processing 244/753 atomic regions from SNP 73033 to 73633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,418 DEBUG Processing 686/862 atomic regions from SNP 205602 to 206202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,439 DEBUG Processing 206/739 atomic regions from SNP 61536 to 62136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,562 DEBUG Processing 101/708 atomic regions from SNP 30089 to 30689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,578 DEBUG Processing 245/753 atomic regions from SNP 73333 to 73933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,641 DEBUG Processing 207/739 atomic regions from SNP 61836 to 62436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,675 DEBUG Processing 687/862 atomic regions from SNP 205902 to 206502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,773 DEBUG Processing 102/708 atomic regions from SNP 30389 to 30989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,790 DEBUG Processing 246/753 atomic regions from SNP 73633 to 74233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,844 DEBUG Processing 208/739 atomic regions from SNP 62136 to 62736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,908 DEBUG Processing 688/862 atomic regions from SNP 206202 to 206802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,978 DEBUG Processing 103/708 atomic regions from SNP 30689 to 31289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,996 DEBUG Processing 247/753 atomic regions from SNP 73933 to 74533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,046 DEBUG Processing 209/739 atomic regions from SNP 62436 to 63036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,131 DEBUG Processing 689/862 atomic regions from SNP 206502 to 207102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,201 DEBUG Processing 248/753 atomic regions from SNP 74233 to 74833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,210 DEBUG Processing 104/708 atomic regions from SNP 30989 to 31589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,247 DEBUG Processing 210/739 atomic regions from SNP 62736 to 63336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,367 DEBUG Processing 690/862 atomic regions from SNP 206802 to 207402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,425 DEBUG Processing 249/753 atomic regions from SNP 74533 to 75133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,427 DEBUG Processing 105/708 atomic regions from SNP 31289 to 31889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,450 DEBUG Processing 211/739 atomic regions from SNP 63036 to 63636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,611 DEBUG Processing 691/862 atomic regions from SNP 207102 to 207702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,636 DEBUG Processing 106/708 atomic regions from SNP 31589 to 32189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,638 DEBUG Processing 250/753 atomic regions from SNP 74833 to 75433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,653 DEBUG Processing 212/739 atomic regions from SNP 63336 to 63936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,847 DEBUG Processing 107/708 atomic regions from SNP 31889 to 32489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,849 DEBUG Processing 251/753 atomic regions from SNP 75133 to 75733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,856 DEBUG Processing 213/739 atomic regions from SNP 63636 to 64236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,858 DEBUG Processing 692/862 atomic regions from SNP 207402 to 208002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,059 DEBUG Processing 108/708 atomic regions from SNP 32189 to 32789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,061 DEBUG Processing 214/739 atomic regions from SNP 63936 to 64536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,064 DEBUG Processing 252/753 atomic regions from SNP 75433 to 76033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,103 DEBUG Processing 693/862 atomic regions from SNP 207702 to 208302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,263 DEBUG Processing 215/739 atomic regions from SNP 64236 to 64836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,273 DEBUG Processing 253/753 atomic regions from SNP 75733 to 76333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,287 DEBUG Processing 109/708 atomic regions from SNP 32489 to 33089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,369 DEBUG Processing 694/862 atomic regions from SNP 208002 to 208602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,465 DEBUG Processing 216/739 atomic regions from SNP 64536 to 65136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,489 DEBUG Processing 254/753 atomic regions from SNP 76033 to 76633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,534 DEBUG Processing 110/708 atomic regions from SNP 32789 to 33389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,616 DEBUG Processing 695/862 atomic regions from SNP 208302 to 208902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,665 DEBUG Processing 217/739 atomic regions from SNP 64836 to 65436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,700 DEBUG Processing 255/753 atomic regions from SNP 76333 to 76933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,781 DEBUG Processing 111/708 atomic regions from SNP 33089 to 33689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,867 DEBUG Processing 218/739 atomic regions from SNP 65136 to 65736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,871 DEBUG Processing 696/862 atomic regions from SNP 208602 to 209202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,909 DEBUG Processing 256/753 atomic regions from SNP 76633 to 77233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,024 DEBUG Processing 112/708 atomic regions from SNP 33389 to 33989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,071 DEBUG Processing 219/739 atomic regions from SNP 65436 to 66036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,120 DEBUG Processing 257/753 atomic regions from SNP 76933 to 77533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,128 DEBUG Processing 697/862 atomic regions from SNP 208902 to 209502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,263 DEBUG Processing 113/708 atomic regions from SNP 33689 to 34289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,272 DEBUG Processing 220/739 atomic regions from SNP 65736 to 66336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,332 DEBUG Processing 258/753 atomic regions from SNP 77233 to 77833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,383 DEBUG Processing 698/862 atomic regions from SNP 209202 to 209802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,471 DEBUG Processing 221/739 atomic regions from SNP 66036 to 66636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,501 DEBUG Processing 114/708 atomic regions from SNP 33989 to 34589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,540 DEBUG Processing 259/753 atomic regions from SNP 77533 to 78133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,618 DEBUG Processing 699/862 atomic regions from SNP 209502 to 210102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,671 DEBUG Processing 222/739 atomic regions from SNP 66336 to 66936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,735 DEBUG Processing 115/708 atomic regions from SNP 34289 to 34889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,746 DEBUG Processing 260/753 atomic regions from SNP 77833 to 78433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,837 DEBUG Processing 700/862 atomic regions from SNP 209802 to 210402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,871 DEBUG Processing 223/739 atomic regions from SNP 66636 to 67236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,954 DEBUG Processing 261/753 atomic regions from SNP 78133 to 78733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,978 DEBUG Processing 116/708 atomic regions from SNP 34589 to 35189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,058 DEBUG Processing 701/862 atomic regions from SNP 210102 to 210702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,072 DEBUG Processing 224/739 atomic regions from SNP 66936 to 67536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,163 DEBUG Processing 262/753 atomic regions from SNP 78433 to 79033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,220 DEBUG Processing 117/708 atomic regions from SNP 34889 to 35489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,272 DEBUG Processing 225/739 atomic regions from SNP 67236 to 67836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,278 DEBUG Processing 702/862 atomic regions from SNP 210402 to 211002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,370 DEBUG Processing 263/753 atomic regions from SNP 78733 to 79333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,460 DEBUG Processing 118/708 atomic regions from SNP 35189 to 35789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,473 DEBUG Processing 226/739 atomic regions from SNP 67536 to 68136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,499 DEBUG Processing 703/862 atomic regions from SNP 210702 to 211302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,574 DEBUG Processing 264/753 atomic regions from SNP 79033 to 79633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,673 DEBUG Processing 227/739 atomic regions from SNP 67836 to 68436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,698 DEBUG Processing 119/708 atomic regions from SNP 35489 to 36089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,742 DEBUG Processing 704/862 atomic regions from SNP 211002 to 211602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,778 DEBUG Processing 265/753 atomic regions from SNP 79333 to 79933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,873 DEBUG Processing 228/739 atomic regions from SNP 68136 to 68736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,935 DEBUG Processing 120/708 atomic regions from SNP 35789 to 36389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,983 DEBUG Processing 705/862 atomic regions from SNP 211302 to 211902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,988 DEBUG Processing 266/753 atomic regions from SNP 79633 to 80233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,072 DEBUG Processing 229/739 atomic regions from SNP 68436 to 69036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,168 DEBUG Processing 121/708 atomic regions from SNP 36089 to 36689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,201 DEBUG Processing 267/753 atomic regions from SNP 79933 to 80533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,232 DEBUG Processing 706/862 atomic regions from SNP 211602 to 212202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,268 DEBUG Processing 230/739 atomic regions from SNP 68736 to 69336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,394 DEBUG Processing 122/708 atomic regions from SNP 36389 to 36989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,414 DEBUG Processing 268/753 atomic regions from SNP 80233 to 80833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,466 DEBUG Processing 231/739 atomic regions from SNP 69036 to 69636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,483 DEBUG Processing 707/862 atomic regions from SNP 211902 to 212502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,615 DEBUG Processing 123/708 atomic regions from SNP 36689 to 37289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,624 DEBUG Processing 269/753 atomic regions from SNP 80533 to 81133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,668 DEBUG Processing 232/739 atomic regions from SNP 69336 to 69936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,729 DEBUG Processing 708/862 atomic regions from SNP 212202 to 212802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,834 DEBUG Processing 270/753 atomic regions from SNP 80833 to 81433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,838 DEBUG Processing 124/708 atomic regions from SNP 36989 to 37589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,867 DEBUG Processing 233/739 atomic regions from SNP 69636 to 70236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,943 DEBUG Processing 709/862 atomic regions from SNP 212502 to 213102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,044 DEBUG Processing 271/753 atomic regions from SNP 81133 to 81733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,067 DEBUG Processing 234/739 atomic regions from SNP 69936 to 70536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,071 DEBUG Processing 125/708 atomic regions from SNP 37289 to 37889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,158 DEBUG Processing 710/862 atomic regions from SNP 212802 to 213402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,255 DEBUG Processing 272/753 atomic regions from SNP 81433 to 82033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,267 DEBUG Processing 235/739 atomic regions from SNP 70236 to 70836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,312 DEBUG Processing 126/708 atomic regions from SNP 37589 to 38189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,378 DEBUG Processing 711/862 atomic regions from SNP 213102 to 213702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,466 DEBUG Processing 236/739 atomic regions from SNP 70536 to 71136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,467 DEBUG Processing 273/753 atomic regions from SNP 81733 to 82333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,542 DEBUG Processing 127/708 atomic regions from SNP 37889 to 38489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,595 DEBUG Processing 712/862 atomic regions from SNP 213402 to 214002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,668 DEBUG Processing 237/739 atomic regions from SNP 70836 to 71436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,678 DEBUG Processing 274/753 atomic regions from SNP 82033 to 82633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,749 DEBUG Processing 128/708 atomic regions from SNP 38189 to 38789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,813 DEBUG Processing 713/862 atomic regions from SNP 213702 to 214302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,869 DEBUG Processing 238/739 atomic regions from SNP 71136 to 71736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,890 DEBUG Processing 275/753 atomic regions from SNP 82333 to 82933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,954 DEBUG Processing 129/708 atomic regions from SNP 38489 to 39089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,047 DEBUG Processing 714/862 atomic regions from SNP 214002 to 214602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,069 DEBUG Processing 239/739 atomic regions from SNP 71436 to 72036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,101 DEBUG Processing 276/753 atomic regions from SNP 82633 to 83233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,160 DEBUG Processing 130/708 atomic regions from SNP 38789 to 39389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,271 DEBUG Processing 240/739 atomic regions from SNP 71736 to 72336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,297 DEBUG Processing 715/862 atomic regions from SNP 214302 to 214902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,314 DEBUG Processing 277/753 atomic regions from SNP 82933 to 83533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,367 DEBUG Processing 131/708 atomic regions from SNP 39089 to 39689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,472 DEBUG Processing 241/739 atomic regions from SNP 72036 to 72636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,528 DEBUG Processing 278/753 atomic regions from SNP 83233 to 83833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,551 DEBUG Processing 716/862 atomic regions from SNP 214602 to 215202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,576 DEBUG Processing 132/708 atomic regions from SNP 39389 to 39989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,669 DEBUG Processing 242/739 atomic regions from SNP 72336 to 72936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,741 DEBUG Processing 279/753 atomic regions from SNP 83533 to 84133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,788 DEBUG Processing 133/708 atomic regions from SNP 39689 to 40289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,811 DEBUG Processing 717/862 atomic regions from SNP 214902 to 215502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,868 DEBUG Processing 243/739 atomic regions from SNP 72636 to 73236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,951 DEBUG Processing 280/753 atomic regions from SNP 83833 to 84433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,000 DEBUG Processing 134/708 atomic regions from SNP 39989 to 40589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,072 DEBUG Processing 244/739 atomic regions from SNP 72936 to 73536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,072 DEBUG Processing 718/862 atomic regions from SNP 215202 to 215802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,160 DEBUG Processing 281/753 atomic regions from SNP 84133 to 84733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,210 DEBUG Processing 135/708 atomic regions from SNP 40289 to 40889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,280 DEBUG Processing 245/739 atomic regions from SNP 73236 to 73836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,328 DEBUG Processing 719/862 atomic regions from SNP 215502 to 216102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,372 DEBUG Processing 282/753 atomic regions from SNP 84433 to 85033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,428 DEBUG Processing 136/708 atomic regions from SNP 40589 to 41189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,499 DEBUG Processing 246/739 atomic regions from SNP 73536 to 74136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,580 DEBUG Processing 720/862 atomic regions from SNP 215802 to 216402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,586 DEBUG Processing 283/753 atomic regions from SNP 84733 to 85333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,661 DEBUG Processing 137/708 atomic regions from SNP 40889 to 41489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,700 DEBUG Processing 247/739 atomic regions from SNP 73836 to 74436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,799 DEBUG Processing 284/753 atomic regions from SNP 85033 to 85633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,834 DEBUG Processing 721/862 atomic regions from SNP 216102 to 216702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,891 DEBUG Processing 138/708 atomic regions from SNP 41189 to 41789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,923 DEBUG Processing 248/739 atomic regions from SNP 74136 to 74736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,011 DEBUG Processing 285/753 atomic regions from SNP 85333 to 85933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,086 DEBUG Processing 722/862 atomic regions from SNP 216402 to 217002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,122 DEBUG Processing 139/708 atomic regions from SNP 41489 to 42089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,141 DEBUG Processing 249/739 atomic regions from SNP 74436 to 75036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,219 DEBUG Processing 286/753 atomic regions from SNP 85633 to 86233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,309 DEBUG Processing 723/862 atomic regions from SNP 216702 to 217302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,346 DEBUG Processing 140/708 atomic regions from SNP 41789 to 42389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,350 DEBUG Processing 250/739 atomic regions from SNP 74736 to 75336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,426 DEBUG Processing 287/753 atomic regions from SNP 85933 to 86533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,532 DEBUG Processing 724/862 atomic regions from SNP 217002 to 217602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,550 DEBUG Processing 251/739 atomic regions from SNP 75036 to 75636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,554 DEBUG Processing 141/708 atomic regions from SNP 42089 to 42689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,633 DEBUG Processing 288/753 atomic regions from SNP 86233 to 86833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,750 DEBUG Processing 252/739 atomic regions from SNP 75336 to 75936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,754 DEBUG Processing 725/862 atomic regions from SNP 217302 to 217902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,785 DEBUG Processing 142/708 atomic regions from SNP 42389 to 42989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,840 DEBUG Processing 289/753 atomic regions from SNP 86533 to 87133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,952 DEBUG Processing 253/739 atomic regions from SNP 75636 to 76236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,976 DEBUG Processing 726/862 atomic regions from SNP 217602 to 218202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,008 DEBUG Processing 143/708 atomic regions from SNP 42689 to 43289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,050 DEBUG Processing 290/753 atomic regions from SNP 86833 to 87433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,152 DEBUG Processing 254/739 atomic regions from SNP 75936 to 76536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,198 DEBUG Processing 727/862 atomic regions from SNP 217902 to 218502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,216 DEBUG Processing 144/708 atomic regions from SNP 42989 to 43589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,262 DEBUG Processing 291/753 atomic regions from SNP 87133 to 87733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,376 DEBUG Processing 255/739 atomic regions from SNP 76236 to 76836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,419 DEBUG Processing 728/862 atomic regions from SNP 218202 to 218802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,424 DEBUG Processing 145/708 atomic regions from SNP 43289 to 43889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,473 DEBUG Processing 292/753 atomic regions from SNP 87433 to 88033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,580 DEBUG Processing 256/739 atomic regions from SNP 76536 to 77136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,635 DEBUG Processing 146/708 atomic regions from SNP 43589 to 44189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,645 DEBUG Processing 729/862 atomic regions from SNP 218502 to 219102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,686 DEBUG Processing 293/753 atomic regions from SNP 87733 to 88333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,779 DEBUG Processing 257/739 atomic regions from SNP 76836 to 77436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,840 DEBUG Processing 147/708 atomic regions from SNP 43889 to 44489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,891 DEBUG Processing 730/862 atomic regions from SNP 218802 to 219402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,897 DEBUG Processing 294/753 atomic regions from SNP 88033 to 88633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,975 DEBUG Processing 258/739 atomic regions from SNP 77136 to 77736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,044 DEBUG Processing 148/708 atomic regions from SNP 44189 to 44789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,106 DEBUG Processing 295/753 atomic regions from SNP 88333 to 88933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,124 DEBUG Processing 731/862 atomic regions from SNP 219102 to 219702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,173 DEBUG Processing 259/739 atomic regions from SNP 77436 to 78036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,246 DEBUG Processing 149/708 atomic regions from SNP 44489 to 45089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,316 DEBUG Processing 296/753 atomic regions from SNP 88633 to 89233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,362 DEBUG Processing 732/862 atomic regions from SNP 219402 to 220002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,372 DEBUG Processing 260/739 atomic regions from SNP 77736 to 78336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,447 DEBUG Processing 150/708 atomic regions from SNP 44789 to 45389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,522 DEBUG Processing 297/753 atomic regions from SNP 88933 to 89533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,573 DEBUG Processing 261/739 atomic regions from SNP 78036 to 78636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,603 DEBUG Processing 733/862 atomic regions from SNP 219702 to 220302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,651 DEBUG Processing 151/708 atomic regions from SNP 45089 to 45689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,728 DEBUG Processing 298/753 atomic regions from SNP 89233 to 89833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,775 DEBUG Processing 262/739 atomic regions from SNP 78336 to 78936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,853 DEBUG Processing 734/862 atomic regions from SNP 220002 to 220602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,856 DEBUG Processing 152/708 atomic regions from SNP 45389 to 45989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,932 DEBUG Processing 299/753 atomic regions from SNP 89533 to 90133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,976 DEBUG Processing 263/739 atomic regions from SNP 78636 to 79236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,067 DEBUG Processing 153/708 atomic regions from SNP 45689 to 46289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,094 DEBUG Processing 735/862 atomic regions from SNP 220302 to 220902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,140 DEBUG Processing 300/753 atomic regions from SNP 89833 to 90433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,177 DEBUG Processing 264/739 atomic regions from SNP 78936 to 79536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,276 DEBUG Processing 154/708 atomic regions from SNP 45989 to 46589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,324 DEBUG Processing 736/862 atomic regions from SNP 220602 to 221202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,349 DEBUG Processing 301/753 atomic regions from SNP 90133 to 90733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,383 DEBUG Processing 265/739 atomic regions from SNP 79236 to 79836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,480 DEBUG Processing 155/708 atomic regions from SNP 46289 to 46889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,553 DEBUG Processing 302/753 atomic regions from SNP 90433 to 91033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,554 DEBUG Processing 737/862 atomic regions from SNP 220902 to 221502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,581 DEBUG Processing 266/739 atomic regions from SNP 79536 to 80136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,684 DEBUG Processing 156/708 atomic regions from SNP 46589 to 47189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,759 DEBUG Processing 303/753 atomic regions from SNP 90733 to 91333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,779 DEBUG Processing 267/739 atomic regions from SNP 79836 to 80436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,782 DEBUG Processing 738/862 atomic regions from SNP 221202 to 221802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,887 DEBUG Processing 157/708 atomic regions from SNP 46889 to 47489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,968 DEBUG Processing 304/753 atomic regions from SNP 91033 to 91633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,981 DEBUG Processing 268/739 atomic regions from SNP 80136 to 80736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,033 DEBUG Processing 739/862 atomic regions from SNP 221502 to 222102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,095 DEBUG Processing 158/708 atomic regions from SNP 47189 to 47789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,174 DEBUG Processing 305/753 atomic regions from SNP 91333 to 91933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,182 DEBUG Processing 269/739 atomic regions from SNP 80436 to 81036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,287 DEBUG Processing 740/862 atomic regions from SNP 221802 to 222402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,305 DEBUG Processing 159/708 atomic regions from SNP 47489 to 48089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,379 DEBUG Processing 306/753 atomic regions from SNP 91633 to 92233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,382 DEBUG Processing 270/739 atomic regions from SNP 80736 to 81336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,518 DEBUG Processing 160/708 atomic regions from SNP 47789 to 48389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,524 DEBUG Processing 741/862 atomic regions from SNP 222102 to 222702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,583 DEBUG Processing 271/739 atomic regions from SNP 81036 to 81636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,587 DEBUG Processing 307/753 atomic regions from SNP 91933 to 92533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,731 DEBUG Processing 161/708 atomic regions from SNP 48089 to 48689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,780 DEBUG Processing 742/862 atomic regions from SNP 222402 to 223002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,783 DEBUG Processing 272/739 atomic regions from SNP 81336 to 81936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,795 DEBUG Processing 308/753 atomic regions from SNP 92233 to 92833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,943 DEBUG Processing 162/708 atomic regions from SNP 48389 to 48989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,985 DEBUG Processing 273/739 atomic regions from SNP 81636 to 82236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,007 DEBUG Processing 309/753 atomic regions from SNP 92533 to 93133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,014 DEBUG Processing 743/862 atomic regions from SNP 222702 to 223302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,155 DEBUG Processing 163/708 atomic regions from SNP 48689 to 49289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,188 DEBUG Processing 274/739 atomic regions from SNP 81936 to 82536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,218 DEBUG Processing 310/753 atomic regions from SNP 92833 to 93433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,237 DEBUG Processing 744/862 atomic regions from SNP 223002 to 223602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,368 DEBUG Processing 164/708 atomic regions from SNP 48989 to 49589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,390 DEBUG Processing 275/739 atomic regions from SNP 82236 to 82836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,432 DEBUG Processing 311/753 atomic regions from SNP 93133 to 93733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,459 DEBUG Processing 745/862 atomic regions from SNP 223302 to 223902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,576 DEBUG Processing 165/708 atomic regions from SNP 49289 to 49889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,595 DEBUG Processing 276/739 atomic regions from SNP 82536 to 83136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,643 DEBUG Processing 312/753 atomic regions from SNP 93433 to 94033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,679 DEBUG Processing 746/862 atomic regions from SNP 223602 to 224202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,782 DEBUG Processing 166/708 atomic regions from SNP 49589 to 50189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,798 DEBUG Processing 277/739 atomic regions from SNP 82836 to 83436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,854 DEBUG Processing 313/753 atomic regions from SNP 93733 to 94333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,899 DEBUG Processing 747/862 atomic regions from SNP 223902 to 224502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,989 DEBUG Processing 167/708 atomic regions from SNP 49889 to 50489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,999 DEBUG Processing 278/739 atomic regions from SNP 83136 to 83736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,064 DEBUG Processing 314/753 atomic regions from SNP 94033 to 94633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,120 DEBUG Processing 748/862 atomic regions from SNP 224202 to 224802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,195 DEBUG Processing 168/708 atomic regions from SNP 50189 to 50789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,200 DEBUG Processing 279/739 atomic regions from SNP 83436 to 84036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,274 DEBUG Processing 315/753 atomic regions from SNP 94333 to 94933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,342 DEBUG Processing 749/862 atomic regions from SNP 224502 to 225102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,404 DEBUG Processing 280/739 atomic regions from SNP 83736 to 84336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,404 DEBUG Processing 169/708 atomic regions from SNP 50489 to 51089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,482 DEBUG Processing 316/753 atomic regions from SNP 94633 to 95233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,569 DEBUG Processing 750/862 atomic regions from SNP 224802 to 225402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,607 DEBUG Processing 281/739 atomic regions from SNP 84036 to 84636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,619 DEBUG Processing 170/708 atomic regions from SNP 50789 to 51389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,690 DEBUG Processing 317/753 atomic regions from SNP 94933 to 95533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,790 DEBUG Processing 751/862 atomic regions from SNP 225102 to 225702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,810 DEBUG Processing 282/739 atomic regions from SNP 84336 to 84936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,829 DEBUG Processing 171/708 atomic regions from SNP 51089 to 51689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,899 DEBUG Processing 318/753 atomic regions from SNP 95233 to 95833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,006 DEBUG Processing 752/862 atomic regions from SNP 225402 to 226002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,012 DEBUG Processing 283/739 atomic regions from SNP 84636 to 85236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,040 DEBUG Processing 172/708 atomic regions from SNP 51389 to 51989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,108 DEBUG Processing 319/753 atomic regions from SNP 95533 to 96133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,214 DEBUG Processing 284/739 atomic regions from SNP 84936 to 85536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,224 DEBUG Processing 753/862 atomic regions from SNP 225702 to 226302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,250 DEBUG Processing 173/708 atomic regions from SNP 51689 to 52289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,317 DEBUG Processing 320/753 atomic regions from SNP 95833 to 96433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,415 DEBUG Processing 285/739 atomic regions from SNP 85236 to 85836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,443 DEBUG Processing 754/862 atomic regions from SNP 226002 to 226602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,458 DEBUG Processing 174/708 atomic regions from SNP 51989 to 52589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,524 DEBUG Processing 321/753 atomic regions from SNP 96133 to 96733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,615 DEBUG Processing 286/739 atomic regions from SNP 85536 to 86136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,666 DEBUG Processing 755/862 atomic regions from SNP 226302 to 226902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,666 DEBUG Processing 175/708 atomic regions from SNP 52289 to 52889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,755 DEBUG Processing 322/753 atomic regions from SNP 96433 to 97033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,814 DEBUG Processing 287/739 atomic regions from SNP 85836 to 86436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,877 DEBUG Processing 176/708 atomic regions from SNP 52589 to 53189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,887 DEBUG Processing 756/862 atomic regions from SNP 226602 to 227202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,975 DEBUG Processing 323/753 atomic regions from SNP 96733 to 97333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,014 DEBUG Processing 288/739 atomic regions from SNP 86136 to 86736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,105 DEBUG Processing 177/708 atomic regions from SNP 52889 to 53489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,107 DEBUG Processing 757/862 atomic regions from SNP 226902 to 227502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,184 DEBUG Processing 324/753 atomic regions from SNP 97033 to 97633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,214 DEBUG Processing 289/739 atomic regions from SNP 86436 to 87036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,321 DEBUG Processing 178/708 atomic regions from SNP 53189 to 53789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,330 DEBUG Processing 758/862 atomic regions from SNP 227202 to 227802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,394 DEBUG Processing 325/753 atomic regions from SNP 97333 to 97933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,416 DEBUG Processing 290/739 atomic regions from SNP 86736 to 87336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,530 DEBUG Processing 179/708 atomic regions from SNP 53489 to 54089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,551 DEBUG Processing 759/862 atomic regions from SNP 227502 to 228102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,606 DEBUG Processing 326/753 atomic regions from SNP 97633 to 98233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,621 DEBUG Processing 291/739 atomic regions from SNP 87036 to 87636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,740 DEBUG Processing 180/708 atomic regions from SNP 53789 to 54389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,772 DEBUG Processing 760/862 atomic regions from SNP 227802 to 228402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,822 DEBUG Processing 292/739 atomic regions from SNP 87336 to 87936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,828 DEBUG Processing 327/753 atomic regions from SNP 97933 to 98533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,948 DEBUG Processing 181/708 atomic regions from SNP 54089 to 54689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,997 DEBUG Processing 761/862 atomic regions from SNP 228102 to 228702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,024 DEBUG Processing 293/739 atomic regions from SNP 87636 to 88236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,061 DEBUG Processing 328/753 atomic regions from SNP 98233 to 98833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,157 DEBUG Processing 182/708 atomic regions from SNP 54389 to 54989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,222 DEBUG Processing 762/862 atomic regions from SNP 228402 to 229002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,226 DEBUG Processing 294/739 atomic regions from SNP 87936 to 88536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,281 DEBUG Processing 329/753 atomic regions from SNP 98533 to 99133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,366 DEBUG Processing 183/708 atomic regions from SNP 54689 to 55289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,425 DEBUG Processing 295/739 atomic regions from SNP 88236 to 88836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,443 DEBUG Processing 763/862 atomic regions from SNP 228702 to 229302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,508 DEBUG Processing 330/753 atomic regions from SNP 98833 to 99433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,576 DEBUG Processing 184/708 atomic regions from SNP 54989 to 55589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,625 DEBUG Processing 296/739 atomic regions from SNP 88536 to 89136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,663 DEBUG Processing 764/862 atomic regions from SNP 229002 to 229602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,739 DEBUG Processing 331/753 atomic regions from SNP 99133 to 99733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,785 DEBUG Processing 185/708 atomic regions from SNP 55289 to 55889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,826 DEBUG Processing 297/739 atomic regions from SNP 88836 to 89436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,889 DEBUG Processing 765/862 atomic regions from SNP 229302 to 229902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,986 DEBUG Processing 332/753 atomic regions from SNP 99433 to 100033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,999 DEBUG Processing 186/708 atomic regions from SNP 55589 to 56189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,029 DEBUG Processing 298/739 atomic regions from SNP 89136 to 89736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,106 DEBUG Processing 766/862 atomic regions from SNP 229602 to 230202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,210 DEBUG Processing 187/708 atomic regions from SNP 55889 to 56489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,226 DEBUG Processing 333/753 atomic regions from SNP 99733 to 100333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,231 DEBUG Processing 299/739 atomic regions from SNP 89436 to 90036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,324 DEBUG Processing 767/862 atomic regions from SNP 229902 to 230502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,421 DEBUG Processing 188/708 atomic regions from SNP 56189 to 56789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,431 DEBUG Processing 300/739 atomic regions from SNP 89736 to 90336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,464 DEBUG Processing 334/753 atomic regions from SNP 100033 to 100633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,545 DEBUG Processing 768/862 atomic regions from SNP 230202 to 230802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,630 DEBUG Processing 189/708 atomic regions from SNP 56489 to 57089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,631 DEBUG Processing 301/739 atomic regions from SNP 90036 to 90636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,702 DEBUG Processing 335/753 atomic regions from SNP 100333 to 100933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,767 DEBUG Processing 769/862 atomic regions from SNP 230502 to 231102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,831 DEBUG Processing 302/739 atomic regions from SNP 90336 to 90936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,837 DEBUG Processing 190/708 atomic regions from SNP 56789 to 57389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,935 DEBUG Processing 336/753 atomic regions from SNP 100633 to 101233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,988 DEBUG Processing 770/862 atomic regions from SNP 230802 to 231402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,031 DEBUG Processing 303/739 atomic regions from SNP 90636 to 91236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,044 DEBUG Processing 191/708 atomic regions from SNP 57089 to 57689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,166 DEBUG Processing 337/753 atomic regions from SNP 100933 to 101533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,210 DEBUG Processing 771/862 atomic regions from SNP 231102 to 231702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,229 DEBUG Processing 304/739 atomic regions from SNP 90936 to 91536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,253 DEBUG Processing 192/708 atomic regions from SNP 57389 to 57989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,397 DEBUG Processing 338/753 atomic regions from SNP 101233 to 101833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,428 DEBUG Processing 305/739 atomic regions from SNP 91236 to 91836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,439 DEBUG Processing 772/862 atomic regions from SNP 231402 to 232002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,458 DEBUG Processing 193/708 atomic regions from SNP 57689 to 58289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,630 DEBUG Processing 306/739 atomic regions from SNP 91536 to 92136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,632 DEBUG Processing 339/753 atomic regions from SNP 101533 to 102133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,666 DEBUG Processing 194/708 atomic regions from SNP 57989 to 58589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,678 DEBUG Processing 773/862 atomic regions from SNP 231702 to 232302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,831 DEBUG Processing 307/739 atomic regions from SNP 91836 to 92436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,872 DEBUG Processing 340/753 atomic regions from SNP 101833 to 102433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,875 DEBUG Processing 195/708 atomic regions from SNP 58289 to 58889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,931 DEBUG Processing 774/862 atomic regions from SNP 232002 to 232602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,028 DEBUG Processing 308/739 atomic regions from SNP 92136 to 92736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,084 DEBUG Processing 196/708 atomic regions from SNP 58589 to 59189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,109 DEBUG Processing 341/753 atomic regions from SNP 102133 to 102733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,181 DEBUG Processing 775/862 atomic regions from SNP 232302 to 232902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,229 DEBUG Processing 309/739 atomic regions from SNP 92436 to 93036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,287 DEBUG Processing 197/708 atomic regions from SNP 58889 to 59489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,349 DEBUG Processing 342/753 atomic regions from SNP 102433 to 103033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,423 DEBUG Processing 776/862 atomic regions from SNP 232602 to 233202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,454 DEBUG Processing 310/739 atomic regions from SNP 92736 to 93336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,489 DEBUG Processing 198/708 atomic regions from SNP 59189 to 59789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,583 DEBUG Processing 343/753 atomic regions from SNP 102733 to 103333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,660 DEBUG Processing 777/862 atomic regions from SNP 232902 to 233502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,676 DEBUG Processing 311/739 atomic regions from SNP 93036 to 93636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,697 DEBUG Processing 199/708 atomic regions from SNP 59489 to 60089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,811 DEBUG Processing 344/753 atomic regions from SNP 103033 to 103633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,878 DEBUG Processing 312/739 atomic regions from SNP 93336 to 93936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,889 DEBUG Processing 778/862 atomic regions from SNP 233202 to 233802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,906 DEBUG Processing 200/708 atomic regions from SNP 59789 to 60389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,034 DEBUG Processing 345/753 atomic regions from SNP 103333 to 103933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,081 DEBUG Processing 313/739 atomic regions from SNP 93636 to 94236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,114 DEBUG Processing 201/708 atomic regions from SNP 60089 to 60689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,116 DEBUG Processing 779/862 atomic regions from SNP 233502 to 234102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,265 DEBUG Processing 346/753 atomic regions from SNP 103633 to 104233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,283 DEBUG Processing 314/739 atomic regions from SNP 93936 to 94536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,322 DEBUG Processing 202/708 atomic regions from SNP 60389 to 60989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,334 DEBUG Processing 780/862 atomic regions from SNP 233802 to 234402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,486 DEBUG Processing 315/739 atomic regions from SNP 94236 to 94836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,500 DEBUG Processing 347/753 atomic regions from SNP 103933 to 104533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,529 DEBUG Processing 203/708 atomic regions from SNP 60689 to 61289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,551 DEBUG Processing 781/862 atomic regions from SNP 234102 to 234702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,689 DEBUG Processing 316/739 atomic regions from SNP 94536 to 95136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,738 DEBUG Processing 204/708 atomic regions from SNP 60989 to 61589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,739 DEBUG Processing 348/753 atomic regions from SNP 104233 to 104833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,768 DEBUG Processing 782/862 atomic regions from SNP 234402 to 235002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,891 DEBUG Processing 317/739 atomic regions from SNP 94836 to 95436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,946 DEBUG Processing 205/708 atomic regions from SNP 61289 to 61889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,976 DEBUG Processing 349/753 atomic regions from SNP 104533 to 105133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,987 DEBUG Processing 783/862 atomic regions from SNP 234702 to 235302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,091 DEBUG Processing 318/739 atomic regions from SNP 95136 to 95736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,152 DEBUG Processing 206/708 atomic regions from SNP 61589 to 62189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,208 DEBUG Processing 350/753 atomic regions from SNP 104833 to 105433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,220 DEBUG Processing 784/862 atomic regions from SNP 235002 to 235602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,291 DEBUG Processing 319/739 atomic regions from SNP 95436 to 96036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,356 DEBUG Processing 207/708 atomic regions from SNP 61889 to 62489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,440 DEBUG Processing 351/753 atomic regions from SNP 105133 to 105733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,460 DEBUG Processing 785/862 atomic regions from SNP 235302 to 235902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,489 DEBUG Processing 320/739 atomic regions from SNP 95736 to 96336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,556 DEBUG Processing 208/708 atomic regions from SNP 62189 to 62789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,667 DEBUG Processing 352/753 atomic regions from SNP 105433 to 106033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,688 DEBUG Processing 321/739 atomic regions from SNP 96036 to 96636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,697 DEBUG Processing 786/862 atomic regions from SNP 235602 to 236202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,758 DEBUG Processing 209/708 atomic regions from SNP 62489 to 63089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,888 DEBUG Processing 322/739 atomic regions from SNP 96336 to 96936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,897 DEBUG Processing 353/753 atomic regions from SNP 105733 to 106333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,935 DEBUG Processing 787/862 atomic regions from SNP 235902 to 236502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,964 DEBUG Processing 210/708 atomic regions from SNP 62789 to 63389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,087 DEBUG Processing 323/739 atomic regions from SNP 96636 to 97236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,135 DEBUG Processing 354/753 atomic regions from SNP 106033 to 106633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,154 DEBUG Processing 788/862 atomic regions from SNP 236202 to 236802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,171 DEBUG Processing 211/708 atomic regions from SNP 63089 to 63689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,288 DEBUG Processing 324/739 atomic regions from SNP 96936 to 97536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,355 DEBUG Processing 355/753 atomic regions from SNP 106333 to 106933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,375 DEBUG Processing 789/862 atomic regions from SNP 236502 to 237102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,383 DEBUG Processing 212/708 atomic regions from SNP 63389 to 63989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,490 DEBUG Processing 325/739 atomic regions from SNP 97236 to 97836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,563 DEBUG Processing 356/753 atomic regions from SNP 106633 to 107233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,593 DEBUG Processing 213/708 atomic regions from SNP 63689 to 64289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,594 DEBUG Processing 790/862 atomic regions from SNP 236802 to 237402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,691 DEBUG Processing 326/739 atomic regions from SNP 97536 to 98136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,773 DEBUG Processing 357/753 atomic regions from SNP 106933 to 107533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,807 DEBUG Processing 214/708 atomic regions from SNP 63989 to 64589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,815 DEBUG Processing 791/862 atomic regions from SNP 237102 to 237702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,893 DEBUG Processing 327/739 atomic regions from SNP 97836 to 98436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,981 DEBUG Processing 358/753 atomic regions from SNP 107233 to 107833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,019 DEBUG Processing 215/708 atomic regions from SNP 64289 to 64889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,037 DEBUG Processing 792/862 atomic regions from SNP 237402 to 238002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,091 DEBUG Processing 328/739 atomic regions from SNP 98136 to 98736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,187 DEBUG Processing 359/753 atomic regions from SNP 107533 to 108133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,232 DEBUG Processing 216/708 atomic regions from SNP 64589 to 65189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,256 DEBUG Processing 793/862 atomic regions from SNP 237702 to 238302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,295 DEBUG Processing 329/739 atomic regions from SNP 98436 to 99036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,400 DEBUG Processing 360/753 atomic regions from SNP 107833 to 108433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,444 DEBUG Processing 217/708 atomic regions from SNP 64889 to 65489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,475 DEBUG Processing 794/862 atomic regions from SNP 238002 to 238602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,527 DEBUG Processing 330/739 atomic regions from SNP 98736 to 99336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,606 DEBUG Processing 361/753 atomic regions from SNP 108133 to 108733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,658 DEBUG Processing 218/708 atomic regions from SNP 65189 to 65789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,695 DEBUG Processing 795/862 atomic regions from SNP 238302 to 238902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,731 DEBUG Processing 331/739 atomic regions from SNP 99036 to 99636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,812 DEBUG Processing 362/753 atomic regions from SNP 108433 to 109033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,901 DEBUG Processing 219/708 atomic regions from SNP 65489 to 66089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,915 DEBUG Processing 796/862 atomic regions from SNP 238602 to 239202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,934 DEBUG Processing 332/739 atomic regions from SNP 99336 to 99936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,014 DEBUG Processing 363/753 atomic regions from SNP 108733 to 109333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,135 DEBUG Processing 797/862 atomic regions from SNP 238902 to 239502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,140 DEBUG Processing 220/708 atomic regions from SNP 65789 to 66389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,143 DEBUG Processing 333/739 atomic regions from SNP 99636 to 100236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,220 DEBUG Processing 364/753 atomic regions from SNP 109033 to 109633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,349 DEBUG Processing 334/739 atomic regions from SNP 99936 to 100536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,355 DEBUG Processing 221/708 atomic regions from SNP 66089 to 66689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,360 DEBUG Processing 798/862 atomic regions from SNP 239202 to 239802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,427 DEBUG Processing 365/753 atomic regions from SNP 109333 to 109933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,552 DEBUG Processing 335/739 atomic regions from SNP 100236 to 100836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,579 DEBUG Processing 222/708 atomic regions from SNP 66389 to 66989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,585 DEBUG Processing 799/862 atomic regions from SNP 239502 to 240102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,637 DEBUG Processing 366/753 atomic regions from SNP 109633 to 110233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,756 DEBUG Processing 336/739 atomic regions from SNP 100536 to 101136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,795 DEBUG Processing 223/708 atomic regions from SNP 66689 to 67289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,811 DEBUG Processing 800/862 atomic regions from SNP 239802 to 240402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,850 DEBUG Processing 367/753 atomic regions from SNP 109933 to 110533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,957 DEBUG Processing 337/739 atomic regions from SNP 100836 to 101436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,008 DEBUG Processing 224/708 atomic regions from SNP 66989 to 67589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,037 DEBUG Processing 801/862 atomic regions from SNP 240102 to 240702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,061 DEBUG Processing 368/753 atomic regions from SNP 110233 to 110833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,159 DEBUG Processing 338/739 atomic regions from SNP 101136 to 101736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,223 DEBUG Processing 225/708 atomic regions from SNP 67289 to 67889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,262 DEBUG Processing 802/862 atomic regions from SNP 240402 to 241002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,281 DEBUG Processing 369/753 atomic regions from SNP 110533 to 111133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,364 DEBUG Processing 339/739 atomic regions from SNP 101436 to 102036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,434 DEBUG Processing 226/708 atomic regions from SNP 67589 to 68189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,485 DEBUG Processing 803/862 atomic regions from SNP 240702 to 241302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,493 DEBUG Processing 370/753 atomic regions from SNP 110833 to 111433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,565 DEBUG Processing 340/739 atomic regions from SNP 101736 to 102336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,642 DEBUG Processing 227/708 atomic regions from SNP 67889 to 68489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,704 DEBUG Processing 371/753 atomic regions from SNP 111133 to 111733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,705 DEBUG Processing 804/862 atomic regions from SNP 241002 to 241602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,769 DEBUG Processing 341/739 atomic regions from SNP 102036 to 102636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,849 DEBUG Processing 228/708 atomic regions from SNP 68189 to 68789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,912 DEBUG Processing 372/753 atomic regions from SNP 111433 to 112033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,926 DEBUG Processing 805/862 atomic regions from SNP 241302 to 241902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,970 DEBUG Processing 342/739 atomic regions from SNP 102336 to 102936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,056 DEBUG Processing 229/708 atomic regions from SNP 68489 to 69089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,120 DEBUG Processing 373/753 atomic regions from SNP 111733 to 112333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,144 DEBUG Processing 806/862 atomic regions from SNP 241602 to 242202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,171 DEBUG Processing 343/739 atomic regions from SNP 102636 to 103236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,262 DEBUG Processing 230/708 atomic regions from SNP 68789 to 69389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,339 DEBUG Processing 374/753 atomic regions from SNP 112033 to 112633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,362 DEBUG Processing 807/862 atomic regions from SNP 241902 to 242502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,373 DEBUG Processing 344/739 atomic regions from SNP 102936 to 103536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,468 DEBUG Processing 231/708 atomic regions from SNP 69089 to 69689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,561 DEBUG Processing 375/753 atomic regions from SNP 112333 to 112933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,575 DEBUG Processing 345/739 atomic regions from SNP 103236 to 103836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,579 DEBUG Processing 808/862 atomic regions from SNP 242202 to 242802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,697 DEBUG Processing 232/708 atomic regions from SNP 69389 to 69989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,769 DEBUG Processing 376/753 atomic regions from SNP 112633 to 113233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,776 DEBUG Processing 346/739 atomic regions from SNP 103536 to 104136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,798 DEBUG Processing 809/862 atomic regions from SNP 242502 to 243102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,922 DEBUG Processing 233/708 atomic regions from SNP 69689 to 70289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,980 DEBUG Processing 347/739 atomic regions from SNP 103836 to 104436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,985 DEBUG Processing 377/753 atomic regions from SNP 112933 to 113533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,015 DEBUG Processing 810/862 atomic regions from SNP 242802 to 243402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,132 DEBUG Processing 234/708 atomic regions from SNP 69989 to 70589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,188 DEBUG Processing 348/739 atomic regions from SNP 104136 to 104736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,207 DEBUG Processing 378/753 atomic regions from SNP 113233 to 113833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,232 DEBUG Processing 811/862 atomic regions from SNP 243102 to 243702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,338 DEBUG Processing 235/708 atomic regions from SNP 70289 to 70889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,392 DEBUG Processing 349/739 atomic regions from SNP 104436 to 105036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,414 DEBUG Processing 379/753 atomic regions from SNP 113533 to 114133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,450 DEBUG Processing 812/862 atomic regions from SNP 243402 to 244002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,543 DEBUG Processing 236/708 atomic regions from SNP 70589 to 71189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,597 DEBUG Processing 350/739 atomic regions from SNP 104736 to 105336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,621 DEBUG Processing 380/753 atomic regions from SNP 113833 to 114433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,667 DEBUG Processing 813/862 atomic regions from SNP 243702 to 244302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,748 DEBUG Processing 237/708 atomic regions from SNP 70889 to 71489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,801 DEBUG Processing 351/739 atomic regions from SNP 105036 to 105636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,841 DEBUG Processing 381/753 atomic regions from SNP 114133 to 114733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,885 DEBUG Processing 814/862 atomic regions from SNP 244002 to 244602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,954 DEBUG Processing 238/708 atomic regions from SNP 71189 to 71789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,006 DEBUG Processing 352/739 atomic regions from SNP 105336 to 105936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,046 DEBUG Processing 382/753 atomic regions from SNP 114433 to 115033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,104 DEBUG Processing 815/862 atomic regions from SNP 244302 to 244902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,182 DEBUG Processing 239/708 atomic regions from SNP 71489 to 72089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,213 DEBUG Processing 353/739 atomic regions from SNP 105636 to 106236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,256 DEBUG Processing 383/753 atomic regions from SNP 114733 to 115333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,324 DEBUG Processing 816/862 atomic regions from SNP 244602 to 245202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,400 DEBUG Processing 240/708 atomic regions from SNP 71789 to 72389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,417 DEBUG Processing 354/739 atomic regions from SNP 105936 to 106536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,468 DEBUG Processing 384/753 atomic regions from SNP 115033 to 115633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,546 DEBUG Processing 817/862 atomic regions from SNP 244902 to 245502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,614 DEBUG Processing 241/708 atomic regions from SNP 72089 to 72689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,623 DEBUG Processing 355/739 atomic regions from SNP 106236 to 106836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,679 DEBUG Processing 385/753 atomic regions from SNP 115333 to 115933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,766 DEBUG Processing 818/862 atomic regions from SNP 245202 to 245802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,825 DEBUG Processing 242/708 atomic regions from SNP 72389 to 72989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,828 DEBUG Processing 356/739 atomic regions from SNP 106536 to 107136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,889 DEBUG Processing 386/753 atomic regions from SNP 115633 to 116233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,986 DEBUG Processing 819/862 atomic regions from SNP 245502 to 246102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,034 DEBUG Processing 357/739 atomic regions from SNP 106836 to 107436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,053 DEBUG Processing 243/708 atomic regions from SNP 72689 to 73289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,099 DEBUG Processing 387/753 atomic regions from SNP 115933 to 116533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,212 DEBUG Processing 820/862 atomic regions from SNP 245802 to 246402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,239 DEBUG Processing 358/739 atomic regions from SNP 107136 to 107736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,292 DEBUG Processing 244/708 atomic regions from SNP 72989 to 73589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,322 DEBUG Processing 388/753 atomic regions from SNP 116233 to 116833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,430 DEBUG Processing 821/862 atomic regions from SNP 246102 to 246702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,445 DEBUG Processing 359/739 atomic regions from SNP 107436 to 108036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,515 DEBUG Processing 245/708 atomic regions from SNP 73289 to 73889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,532 DEBUG Processing 389/753 atomic regions from SNP 116533 to 117133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,649 DEBUG Processing 360/739 atomic regions from SNP 107736 to 108336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,670 DEBUG Processing 822/862 atomic regions from SNP 246402 to 247002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,726 DEBUG Processing 246/708 atomic regions from SNP 73589 to 74189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,741 DEBUG Processing 390/753 atomic regions from SNP 116833 to 117433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,854 DEBUG Processing 361/739 atomic regions from SNP 108036 to 108636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,897 DEBUG Processing 823/862 atomic regions from SNP 246702 to 247302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,936 DEBUG Processing 247/708 atomic regions from SNP 73889 to 74489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,962 DEBUG Processing 391/753 atomic regions from SNP 117133 to 117733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,056 DEBUG Processing 362/739 atomic regions from SNP 108336 to 108936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,138 DEBUG Processing 824/862 atomic regions from SNP 247002 to 247602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,145 DEBUG Processing 248/708 atomic regions from SNP 74189 to 74789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,193 DEBUG Processing 392/753 atomic regions from SNP 117433 to 118033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,258 DEBUG Processing 363/739 atomic regions from SNP 108636 to 109236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,356 DEBUG Processing 249/708 atomic regions from SNP 74489 to 75089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,367 DEBUG Processing 825/862 atomic regions from SNP 247302 to 247902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,424 DEBUG Processing 393/753 atomic regions from SNP 117733 to 118333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,462 DEBUG Processing 364/739 atomic regions from SNP 108936 to 109536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,572 DEBUG Processing 250/708 atomic regions from SNP 74789 to 75389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,595 DEBUG Processing 826/862 atomic regions from SNP 247602 to 248202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,655 DEBUG Processing 394/753 atomic regions from SNP 118033 to 118633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,677 DEBUG Processing 365/739 atomic regions from SNP 109236 to 109836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,781 DEBUG Processing 251/708 atomic regions from SNP 75089 to 75689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,818 DEBUG Processing 827/862 atomic regions from SNP 247902 to 248502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,863 DEBUG Processing 395/753 atomic regions from SNP 118333 to 118933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,878 DEBUG Processing 366/739 atomic regions from SNP 109536 to 110136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,990 DEBUG Processing 252/708 atomic regions from SNP 75389 to 75989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,042 DEBUG Processing 828/862 atomic regions from SNP 248202 to 248802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,074 DEBUG Processing 396/753 atomic regions from SNP 118633 to 119233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,082 DEBUG Processing 367/739 atomic regions from SNP 109836 to 110436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,199 DEBUG Processing 253/708 atomic regions from SNP 75689 to 76289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,265 DEBUG Processing 829/862 atomic regions from SNP 248502 to 249102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,284 DEBUG Processing 397/753 atomic regions from SNP 118933 to 119533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,285 DEBUG Processing 368/739 atomic regions from SNP 110136 to 110736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,406 DEBUG Processing 254/708 atomic regions from SNP 75989 to 76589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,488 DEBUG Processing 369/739 atomic regions from SNP 110436 to 111036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,488 DEBUG Processing 830/862 atomic regions from SNP 248802 to 249402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,496 DEBUG Processing 398/753 atomic regions from SNP 119233 to 119833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,611 DEBUG Processing 255/708 atomic regions from SNP 76289 to 76889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,695 DEBUG Processing 370/739 atomic regions from SNP 110736 to 111336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,708 DEBUG Processing 399/753 atomic regions from SNP 119533 to 120133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,711 DEBUG Processing 831/862 atomic regions from SNP 249102 to 249702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,816 DEBUG Processing 256/708 atomic regions from SNP 76589 to 77189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,900 DEBUG Processing 371/739 atomic regions from SNP 111036 to 111636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,927 DEBUG Processing 400/753 atomic regions from SNP 119833 to 120433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,933 DEBUG Processing 832/862 atomic regions from SNP 249402 to 250002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,017 DEBUG Processing 257/708 atomic regions from SNP 76889 to 77489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,105 DEBUG Processing 372/739 atomic regions from SNP 111336 to 111936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,159 DEBUG Processing 833/862 atomic regions from SNP 249702 to 250302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,167 DEBUG Processing 401/753 atomic regions from SNP 120133 to 120733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,232 DEBUG Processing 258/708 atomic regions from SNP 77189 to 77789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,315 DEBUG Processing 373/739 atomic regions from SNP 111636 to 112236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,392 DEBUG Processing 402/753 atomic regions from SNP 120433 to 121033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,397 DEBUG Processing 834/862 atomic regions from SNP 250002 to 250602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,443 DEBUG Processing 259/708 atomic regions from SNP 77489 to 78089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,522 DEBUG Processing 374/739 atomic regions from SNP 111936 to 112536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,609 DEBUG Processing 403/753 atomic regions from SNP 120733 to 121333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,624 DEBUG Processing 835/862 atomic regions from SNP 250302 to 250902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,655 DEBUG Processing 260/708 atomic regions from SNP 77789 to 78389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,732 DEBUG Processing 375/739 atomic regions from SNP 112236 to 112836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,824 DEBUG Processing 404/753 atomic regions from SNP 121033 to 121633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,849 DEBUG Processing 836/862 atomic regions from SNP 250602 to 251202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,867 DEBUG Processing 261/708 atomic regions from SNP 78089 to 78689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,937 DEBUG Processing 376/739 atomic regions from SNP 112536 to 113136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,039 DEBUG Processing 405/753 atomic regions from SNP 121333 to 121933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,073 DEBUG Processing 837/862 atomic regions from SNP 250902 to 251502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,078 DEBUG Processing 262/708 atomic regions from SNP 78389 to 78989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,143 DEBUG Processing 377/739 atomic regions from SNP 112836 to 113436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,250 DEBUG Processing 406/753 atomic regions from SNP 121633 to 122233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,290 DEBUG Processing 263/708 atomic regions from SNP 78689 to 79289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,303 DEBUG Processing 838/862 atomic regions from SNP 251202 to 251802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,346 DEBUG Processing 378/739 atomic regions from SNP 113136 to 113736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,461 DEBUG Processing 407/753 atomic regions from SNP 121933 to 122533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,501 DEBUG Processing 264/708 atomic regions from SNP 78989 to 79589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,523 DEBUG Processing 839/862 atomic regions from SNP 251502 to 252102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,548 DEBUG Processing 379/739 atomic regions from SNP 113436 to 114036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,669 DEBUG Processing 408/753 atomic regions from SNP 122233 to 122833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,711 DEBUG Processing 265/708 atomic regions from SNP 79289 to 79889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,745 DEBUG Processing 840/862 atomic regions from SNP 251802 to 252402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,765 DEBUG Processing 380/739 atomic regions from SNP 113736 to 114336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,878 DEBUG Processing 409/753 atomic regions from SNP 122533 to 123133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,927 DEBUG Processing 266/708 atomic regions from SNP 79589 to 80189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,973 DEBUG Processing 841/862 atomic regions from SNP 252102 to 252702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,011 DEBUG Processing 381/739 atomic regions from SNP 114036 to 114636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,091 DEBUG Processing 410/753 atomic regions from SNP 122833 to 123433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,140 DEBUG Processing 267/708 atomic regions from SNP 79889 to 80489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,194 DEBUG Processing 842/862 atomic regions from SNP 252402 to 253002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,243 DEBUG Processing 382/739 atomic regions from SNP 114336 to 114936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,299 DEBUG Processing 411/753 atomic regions from SNP 123133 to 123733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,348 DEBUG Processing 268/708 atomic regions from SNP 80189 to 80789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,410 DEBUG Processing 843/862 atomic regions from SNP 252702 to 253302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,479 DEBUG Processing 383/739 atomic regions from SNP 114636 to 115236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,505 DEBUG Processing 412/753 atomic regions from SNP 123433 to 124033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,555 DEBUG Processing 269/708 atomic regions from SNP 80489 to 81089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,628 DEBUG Processing 844/862 atomic regions from SNP 253002 to 253602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,714 DEBUG Processing 413/753 atomic regions from SNP 123733 to 124333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,721 DEBUG Processing 384/739 atomic regions from SNP 114936 to 115536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,764 DEBUG Processing 270/708 atomic regions from SNP 80789 to 81389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,857 DEBUG Processing 845/862 atomic regions from SNP 253302 to 253902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,924 DEBUG Processing 414/753 atomic regions from SNP 124033 to 124633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,959 DEBUG Processing 385/739 atomic regions from SNP 115236 to 115836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,975 DEBUG Processing 271/708 atomic regions from SNP 81089 to 81689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,101 DEBUG Processing 846/862 atomic regions from SNP 253602 to 254202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,133 DEBUG Processing 415/753 atomic regions from SNP 124333 to 124933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,182 DEBUG Processing 272/708 atomic regions from SNP 81389 to 81989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,196 DEBUG Processing 386/739 atomic regions from SNP 115536 to 116136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,341 DEBUG Processing 847/862 atomic regions from SNP 253902 to 254502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,345 DEBUG Processing 416/753 atomic regions from SNP 124633 to 125233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,392 DEBUG Processing 273/708 atomic regions from SNP 81689 to 82289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,429 DEBUG Processing 387/739 atomic regions from SNP 115836 to 116436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,562 DEBUG Processing 417/753 atomic regions from SNP 124933 to 125533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,579 DEBUG Processing 848/862 atomic regions from SNP 254202 to 254802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,602 DEBUG Processing 274/708 atomic regions from SNP 81989 to 82589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,650 DEBUG Processing 388/739 atomic regions from SNP 116136 to 116736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,773 DEBUG Processing 418/753 atomic regions from SNP 125233 to 125833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,805 DEBUG Processing 849/862 atomic regions from SNP 254502 to 255102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,811 DEBUG Processing 275/708 atomic regions from SNP 82289 to 82889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,865 DEBUG Processing 389/739 atomic regions from SNP 116436 to 117036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,983 DEBUG Processing 419/753 atomic regions from SNP 125533 to 126133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,023 DEBUG Processing 276/708 atomic regions from SNP 82589 to 83189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,029 DEBUG Processing 850/862 atomic regions from SNP 254802 to 255402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,101 DEBUG Processing 390/739 atomic regions from SNP 116736 to 117336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,193 DEBUG Processing 420/753 atomic regions from SNP 125833 to 126433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,251 DEBUG Processing 277/708 atomic regions from SNP 82889 to 83489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,253 DEBUG Processing 851/862 atomic regions from SNP 255102 to 255702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,339 DEBUG Processing 391/739 atomic regions from SNP 117036 to 117636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,401 DEBUG Processing 421/753 atomic regions from SNP 126133 to 126733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,474 DEBUG Processing 852/862 atomic regions from SNP 255402 to 256002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,491 DEBUG Processing 278/708 atomic regions from SNP 83189 to 83789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,563 DEBUG Processing 392/739 atomic regions from SNP 117336 to 117936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,608 DEBUG Processing 422/753 atomic regions from SNP 126433 to 127033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,698 DEBUG Processing 853/862 atomic regions from SNP 255702 to 256302 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,701 DEBUG Processing 279/708 atomic regions from SNP 83489 to 84089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,762 DEBUG Processing 393/739 atomic regions from SNP 117636 to 118236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,817 DEBUG Processing 423/753 atomic regions from SNP 126733 to 127333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,910 DEBUG Processing 280/708 atomic regions from SNP 83789 to 84389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,919 DEBUG Processing 854/862 atomic regions from SNP 256002 to 256602 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,977 DEBUG Processing 394/739 atomic regions from SNP 117936 to 118536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,028 DEBUG Processing 424/753 atomic regions from SNP 127033 to 127633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,118 DEBUG Processing 281/708 atomic regions from SNP 84089 to 84689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,139 DEBUG Processing 855/862 atomic regions from SNP 256302 to 256902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,201 DEBUG Processing 395/739 atomic regions from SNP 118236 to 118836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,253 DEBUG Processing 425/753 atomic regions from SNP 127333 to 127933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,325 DEBUG Processing 282/708 atomic regions from SNP 84389 to 84989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,366 DEBUG Processing 856/862 atomic regions from SNP 256602 to 257202 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,437 DEBUG Processing 396/739 atomic regions from SNP 118536 to 119136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,490 DEBUG Processing 426/753 atomic regions from SNP 127633 to 128233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,535 DEBUG Processing 283/708 atomic regions from SNP 84689 to 85289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,591 DEBUG Processing 857/862 atomic regions from SNP 256902 to 257502 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,666 DEBUG Processing 397/739 atomic regions from SNP 118836 to 119436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,736 DEBUG Processing 427/753 atomic regions from SNP 127933 to 128533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,743 DEBUG Processing 284/708 atomic regions from SNP 84989 to 85589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,811 DEBUG Processing 858/862 atomic regions from SNP 257202 to 257802 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,866 DEBUG Processing 398/739 atomic regions from SNP 119136 to 119736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,952 DEBUG Processing 285/708 atomic regions from SNP 85289 to 85889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,979 DEBUG Processing 428/753 atomic regions from SNP 128233 to 128833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,038 DEBUG Processing 859/862 atomic regions from SNP 257502 to 258102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,063 DEBUG Processing 399/739 atomic regions from SNP 119436 to 120036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,158 DEBUG Processing 286/708 atomic regions from SNP 85589 to 86189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,191 DEBUG Processing 429/753 atomic regions from SNP 128533 to 129133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,261 DEBUG Processing 400/739 atomic regions from SNP 119736 to 120336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,281 DEBUG Processing 860/862 atomic regions from SNP 257802 to 258402 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,365 DEBUG Processing 287/708 atomic regions from SNP 85889 to 86489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,416 DEBUG Processing 430/753 atomic regions from SNP 128833 to 129433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,459 DEBUG Processing 401/739 atomic regions from SNP 120036 to 120636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,517 DEBUG Processing 861/862 atomic regions from SNP 258102 to 258702 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,575 DEBUG Processing 288/708 atomic regions from SNP 86189 to 86789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,650 DEBUG Processing 431/753 atomic regions from SNP 129133 to 129733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,657 DEBUG Processing 402/739 atomic regions from SNP 120336 to 120936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,751 DEBUG Processing 862/862 atomic regions from SNP 258402 to 259002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,786 DEBUG Processing 289/708 atomic regions from SNP 86489 to 87089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,861 DEBUG Processing 403/739 atomic regions from SNP 120636 to 121236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,865 DEBUG Unique SNPs positions in subchromosome 1: 259003 2025-01-31 09:51:33,883 DEBUG Processing 432/753 atomic regions from SNP 129433 to 130033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,005 DEBUG Processing 290/708 atomic regions from SNP 86789 to 87389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,061 DEBUG Processing 404/739 atomic regions from SNP 120936 to 121536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,104 DEBUG Processing 433/753 atomic regions from SNP 129733 to 130333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,232 DEBUG Processing 291/708 atomic regions from SNP 87089 to 87689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,261 DEBUG Processing 405/739 atomic regions from SNP 121236 to 121836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,316 DEBUG Processing 434/753 atomic regions from SNP 130033 to 130633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,449 DEBUG Processing 292/708 atomic regions from SNP 87389 to 87989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,462 DEBUG Processing 406/739 atomic regions from SNP 121536 to 122136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,552 DEBUG Processing 435/753 atomic regions from SNP 130333 to 130933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,652 DEBUG Processing 293/708 atomic regions from SNP 87689 to 88289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,662 DEBUG Processing 407/739 atomic regions from SNP 121836 to 122436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,788 DEBUG Processing 436/753 atomic regions from SNP 130633 to 131233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,857 DEBUG Processing 294/708 atomic regions from SNP 87989 to 88589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,864 DEBUG Processing 408/739 atomic regions from SNP 122136 to 122736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,014 DEBUG Processing 437/753 atomic regions from SNP 130933 to 131533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,061 DEBUG Processing 295/708 atomic regions from SNP 88289 to 88889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,065 DEBUG Processing 409/739 atomic regions from SNP 122436 to 123036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,253 DEBUG Processing 438/753 atomic regions from SNP 131233 to 131833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,265 DEBUG Processing 296/708 atomic regions from SNP 88589 to 89189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,295 DEBUG Processing 410/739 atomic regions from SNP 122736 to 123336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,470 DEBUG Processing 297/708 atomic regions from SNP 88889 to 89489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,483 DEBUG Processing 439/753 atomic regions from SNP 131533 to 132133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,511 DEBUG Processing 411/739 atomic regions from SNP 123036 to 123636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,676 DEBUG Processing 298/708 atomic regions from SNP 89189 to 89789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,703 DEBUG Processing 440/753 atomic regions from SNP 131833 to 132433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,713 DEBUG Processing 412/739 atomic regions from SNP 123336 to 123936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,883 DEBUG Processing 299/708 atomic regions from SNP 89489 to 90089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,915 DEBUG Processing 413/739 atomic regions from SNP 123636 to 124236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,943 DEBUG Processing 441/753 atomic regions from SNP 132133 to 132733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,088 DEBUG Processing 300/708 atomic regions from SNP 89789 to 90389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,114 DEBUG Processing 414/739 atomic regions from SNP 123936 to 124536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,181 DEBUG Processing 442/753 atomic regions from SNP 132433 to 133033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,293 DEBUG Processing 301/708 atomic regions from SNP 90089 to 90689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,315 DEBUG Processing 415/739 atomic regions from SNP 124236 to 124836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,420 DEBUG Processing 443/753 atomic regions from SNP 132733 to 133333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,500 DEBUG Processing 302/708 atomic regions from SNP 90389 to 90989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,514 DEBUG Processing 416/739 atomic regions from SNP 124536 to 125136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,652 DEBUG Processing 444/753 atomic regions from SNP 133033 to 133633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,704 DEBUG Processing 303/708 atomic regions from SNP 90689 to 91289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,713 DEBUG Processing 417/739 atomic regions from SNP 124836 to 125436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,856 DEBUG Processing 445/753 atomic regions from SNP 133333 to 133933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,908 DEBUG Processing 304/708 atomic regions from SNP 90989 to 91589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,913 DEBUG Processing 418/739 atomic regions from SNP 125136 to 125736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,060 DEBUG Processing 446/753 atomic regions from SNP 133633 to 134233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,113 DEBUG Processing 419/739 atomic regions from SNP 125436 to 126036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,114 DEBUG Processing 305/708 atomic regions from SNP 91289 to 91889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,268 DEBUG Processing 447/753 atomic regions from SNP 133933 to 134533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,313 DEBUG Processing 420/739 atomic regions from SNP 125736 to 126336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,320 DEBUG Processing 306/708 atomic regions from SNP 91589 to 92189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,476 DEBUG Processing 448/753 atomic regions from SNP 134233 to 134833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,511 DEBUG Processing 421/739 atomic regions from SNP 126036 to 126636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,528 DEBUG Processing 307/708 atomic regions from SNP 91889 to 92489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,688 DEBUG Processing 449/753 atomic regions from SNP 134533 to 135133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,711 DEBUG Processing 422/739 atomic regions from SNP 126336 to 126936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,736 DEBUG Processing 308/708 atomic regions from SNP 92189 to 92789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,914 DEBUG Processing 423/739 atomic regions from SNP 126636 to 127236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,924 DEBUG Processing 450/753 atomic regions from SNP 134833 to 135433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,963 DEBUG Processing 309/708 atomic regions from SNP 92489 to 93089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,137 DEBUG Processing 424/739 atomic regions from SNP 126936 to 127536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,165 DEBUG Processing 451/753 atomic regions from SNP 135133 to 135733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,178 DEBUG Processing 310/708 atomic regions from SNP 92789 to 93389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,347 DEBUG Processing 425/739 atomic regions from SNP 127236 to 127836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,399 DEBUG Processing 311/708 atomic regions from SNP 93089 to 93689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,407 DEBUG Processing 452/753 atomic regions from SNP 135433 to 136033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,550 DEBUG Processing 426/739 atomic regions from SNP 127536 to 128136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,640 DEBUG Processing 312/708 atomic regions from SNP 93389 to 93989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,656 DEBUG Processing 453/753 atomic regions from SNP 135733 to 136333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,754 DEBUG Processing 427/739 atomic regions from SNP 127836 to 128436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,882 DEBUG Processing 313/708 atomic regions from SNP 93689 to 94289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,893 DEBUG Processing 454/753 atomic regions from SNP 136033 to 136633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,963 DEBUG Processing 428/739 atomic regions from SNP 128136 to 128736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,115 DEBUG Processing 314/708 atomic regions from SNP 93989 to 94589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,131 DEBUG Processing 455/753 atomic regions from SNP 136333 to 136933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,166 DEBUG Processing 429/739 atomic regions from SNP 128436 to 129036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,350 DEBUG Processing 315/708 atomic regions from SNP 94289 to 94889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,369 DEBUG Processing 430/739 atomic regions from SNP 128736 to 129336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,371 DEBUG Processing 456/753 atomic regions from SNP 136633 to 137233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,572 DEBUG Processing 431/739 atomic regions from SNP 129036 to 129636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,586 DEBUG Processing 316/708 atomic regions from SNP 94589 to 95189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,621 DEBUG Processing 457/753 atomic regions from SNP 136933 to 137533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,777 DEBUG Processing 432/739 atomic regions from SNP 129336 to 129936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,831 DEBUG Processing 317/708 atomic regions from SNP 94889 to 95489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,867 DEBUG Processing 458/753 atomic regions from SNP 137233 to 137833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,978 DEBUG Processing 433/739 atomic regions from SNP 129636 to 130236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,076 DEBUG Processing 318/708 atomic regions from SNP 95189 to 95789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,115 DEBUG Processing 459/753 atomic regions from SNP 137533 to 138133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,179 DEBUG Processing 434/739 atomic regions from SNP 129936 to 130536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,318 DEBUG Processing 319/708 atomic regions from SNP 95489 to 96089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,357 DEBUG Processing 460/753 atomic regions from SNP 137833 to 138433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,381 DEBUG Processing 435/739 atomic regions from SNP 130236 to 130836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,540 DEBUG Processing 320/708 atomic regions from SNP 95789 to 96389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,585 DEBUG Processing 436/739 atomic regions from SNP 130536 to 131136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,593 DEBUG Processing 461/753 atomic regions from SNP 138133 to 138733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,763 DEBUG Processing 321/708 atomic regions from SNP 96089 to 96689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,800 DEBUG Processing 437/739 atomic regions from SNP 130836 to 131436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,833 DEBUG Processing 462/753 atomic regions from SNP 138433 to 139033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,988 DEBUG Processing 322/708 atomic regions from SNP 96389 to 96989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,021 DEBUG Processing 438/739 atomic regions from SNP 131136 to 131736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,065 DEBUG Processing 463/753 atomic regions from SNP 138733 to 139333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,216 DEBUG Processing 323/708 atomic regions from SNP 96689 to 97289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,223 DEBUG Processing 439/739 atomic regions from SNP 131436 to 132036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,267 DEBUG Processing 464/753 atomic regions from SNP 139033 to 139633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,423 DEBUG Processing 440/739 atomic regions from SNP 131736 to 132336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,440 DEBUG Processing 324/708 atomic regions from SNP 96989 to 97589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,472 DEBUG Processing 465/753 atomic regions from SNP 139333 to 139933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,623 DEBUG Processing 441/739 atomic regions from SNP 132036 to 132636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,661 DEBUG Processing 325/708 atomic regions from SNP 97289 to 97889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,681 DEBUG Processing 466/753 atomic regions from SNP 139633 to 140233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,823 DEBUG Processing 442/739 atomic regions from SNP 132336 to 132936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,886 DEBUG Processing 326/708 atomic regions from SNP 97589 to 98189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,908 DEBUG Processing 467/753 atomic regions from SNP 139933 to 140533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,030 DEBUG Processing 443/739 atomic regions from SNP 132636 to 133236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,098 DEBUG Processing 327/708 atomic regions from SNP 97889 to 98489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,139 DEBUG Processing 468/753 atomic regions from SNP 140233 to 140833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,253 DEBUG Processing 444/739 atomic regions from SNP 132936 to 133536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,302 DEBUG Processing 328/708 atomic regions from SNP 98189 to 98789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,359 DEBUG Processing 469/753 atomic regions from SNP 140533 to 141133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,483 DEBUG Processing 445/739 atomic regions from SNP 133236 to 133836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,505 DEBUG Processing 329/708 atomic regions from SNP 98489 to 99089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,564 DEBUG Processing 470/753 atomic regions from SNP 140833 to 141433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,688 DEBUG Processing 446/739 atomic regions from SNP 133536 to 134136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,708 DEBUG Processing 330/708 atomic regions from SNP 98789 to 99389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,788 DEBUG Processing 471/753 atomic regions from SNP 141133 to 141733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,888 DEBUG Processing 447/739 atomic regions from SNP 133836 to 134436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,914 DEBUG Processing 331/708 atomic regions from SNP 99089 to 99689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,000 DEBUG Processing 472/753 atomic regions from SNP 141433 to 142033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,096 DEBUG Processing 448/739 atomic regions from SNP 134136 to 134736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,120 DEBUG Processing 332/708 atomic regions from SNP 99389 to 99989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,223 DEBUG Processing 473/753 atomic regions from SNP 141733 to 142333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,299 DEBUG Processing 449/739 atomic regions from SNP 134436 to 135036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,324 DEBUG Processing 333/708 atomic regions from SNP 99689 to 100289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,427 DEBUG Processing 474/753 atomic regions from SNP 142033 to 142633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,503 DEBUG Processing 450/739 atomic regions from SNP 134736 to 135336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,534 DEBUG Processing 334/708 atomic regions from SNP 99989 to 100589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,629 DEBUG Processing 475/753 atomic regions from SNP 142333 to 142933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,704 DEBUG Processing 451/739 atomic regions from SNP 135036 to 135636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,737 DEBUG Processing 335/708 atomic regions from SNP 100289 to 100889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,830 DEBUG Processing 476/753 atomic regions from SNP 142633 to 143233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,905 DEBUG Processing 452/739 atomic regions from SNP 135336 to 135936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,940 DEBUG Processing 336/708 atomic regions from SNP 100589 to 101189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,031 DEBUG Processing 477/753 atomic regions from SNP 142933 to 143533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,106 DEBUG Processing 453/739 atomic regions from SNP 135636 to 136236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,145 DEBUG Processing 337/708 atomic regions from SNP 100889 to 101489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,247 DEBUG Processing 478/753 atomic regions from SNP 143233 to 143833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,308 DEBUG Processing 454/739 atomic regions from SNP 135936 to 136536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,349 DEBUG Processing 338/708 atomic regions from SNP 101189 to 101789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,473 DEBUG Processing 479/753 atomic regions from SNP 143533 to 144133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,509 DEBUG Processing 455/739 atomic regions from SNP 136236 to 136836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,552 DEBUG Processing 339/708 atomic regions from SNP 101489 to 102089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,694 DEBUG Processing 480/753 atomic regions from SNP 143833 to 144433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,712 DEBUG Processing 456/739 atomic regions from SNP 136536 to 137136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,788 DEBUG Processing 340/708 atomic regions from SNP 101789 to 102389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,915 DEBUG Processing 457/739 atomic regions from SNP 136836 to 137436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,919 DEBUG Processing 481/753 atomic regions from SNP 144133 to 144733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,006 DEBUG Processing 341/708 atomic regions from SNP 102089 to 102689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,118 DEBUG Processing 458/739 atomic regions from SNP 137136 to 137736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,133 DEBUG Processing 482/753 atomic regions from SNP 144433 to 145033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,206 DEBUG Processing 342/708 atomic regions from SNP 102389 to 102989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,326 DEBUG Processing 459/739 atomic regions from SNP 137436 to 138036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,338 DEBUG Processing 483/753 atomic regions from SNP 144733 to 145333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,412 DEBUG Processing 343/708 atomic regions from SNP 102689 to 103289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,542 DEBUG Processing 484/753 atomic regions from SNP 145033 to 145633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,546 DEBUG Processing 460/739 atomic regions from SNP 137736 to 138336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,621 DEBUG Processing 344/708 atomic regions from SNP 102989 to 103589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,747 DEBUG Processing 485/753 atomic regions from SNP 145333 to 145933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,778 DEBUG Processing 461/739 atomic regions from SNP 138036 to 138636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,839 DEBUG Processing 345/708 atomic regions from SNP 103289 to 103889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,950 DEBUG Processing 486/753 atomic regions from SNP 145633 to 146233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,033 DEBUG Processing 462/739 atomic regions from SNP 138336 to 138936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,045 DEBUG Processing 346/708 atomic regions from SNP 103589 to 104189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,164 DEBUG Processing 487/753 atomic regions from SNP 145933 to 146533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,245 DEBUG Processing 347/708 atomic regions from SNP 103889 to 104489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,270 DEBUG Processing 463/739 atomic regions from SNP 138636 to 139236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,366 DEBUG Processing 488/753 atomic regions from SNP 146233 to 146833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,449 DEBUG Processing 348/708 atomic regions from SNP 104189 to 104789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,507 DEBUG Processing 464/739 atomic regions from SNP 138936 to 139536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,569 DEBUG Processing 489/753 atomic regions from SNP 146533 to 147133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,665 DEBUG Processing 349/708 atomic regions from SNP 104489 to 105089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,754 DEBUG Processing 465/739 atomic regions from SNP 139236 to 139836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,784 DEBUG Processing 490/753 atomic regions from SNP 146833 to 147433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,878 DEBUG Processing 350/708 atomic regions from SNP 104789 to 105389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,976 DEBUG Processing 466/739 atomic regions from SNP 139536 to 140136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,017 DEBUG Processing 491/753 atomic regions from SNP 147133 to 147733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,091 DEBUG Processing 351/708 atomic regions from SNP 105089 to 105689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,195 DEBUG Processing 467/739 atomic regions from SNP 139836 to 140436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,236 DEBUG Processing 492/753 atomic regions from SNP 147433 to 148033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,297 DEBUG Processing 352/708 atomic regions from SNP 105389 to 105989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,429 DEBUG Processing 468/739 atomic regions from SNP 140136 to 140736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,442 DEBUG Processing 493/753 atomic regions from SNP 147733 to 148333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,506 DEBUG Processing 353/708 atomic regions from SNP 105689 to 106289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,649 DEBUG Processing 494/753 atomic regions from SNP 148033 to 148633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,670 DEBUG Processing 469/739 atomic regions from SNP 140436 to 141036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,713 DEBUG Processing 354/708 atomic regions from SNP 105989 to 106589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,855 DEBUG Processing 495/753 atomic regions from SNP 148333 to 148933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,904 DEBUG Processing 470/739 atomic regions from SNP 140736 to 141336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,919 DEBUG Processing 355/708 atomic regions from SNP 106289 to 106889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,055 DEBUG Processing 496/753 atomic regions from SNP 148633 to 149233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,120 DEBUG Processing 356/708 atomic regions from SNP 106589 to 107189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,134 DEBUG Processing 471/739 atomic regions from SNP 141036 to 141636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,256 DEBUG Processing 497/753 atomic regions from SNP 148933 to 149533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,323 DEBUG Processing 357/708 atomic regions from SNP 106889 to 107489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,351 DEBUG Processing 472/739 atomic regions from SNP 141336 to 141936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,456 DEBUG Processing 498/753 atomic regions from SNP 149233 to 149833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,525 DEBUG Processing 358/708 atomic regions from SNP 107189 to 107789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,572 DEBUG Processing 473/739 atomic regions from SNP 141636 to 142236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,656 DEBUG Processing 499/753 atomic regions from SNP 149533 to 150133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,728 DEBUG Processing 359/708 atomic regions from SNP 107489 to 108089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,776 DEBUG Processing 474/739 atomic regions from SNP 141936 to 142536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,859 DEBUG Processing 500/753 atomic regions from SNP 149833 to 150433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,938 DEBUG Processing 360/708 atomic regions from SNP 107789 to 108389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,983 DEBUG Processing 475/739 atomic regions from SNP 142236 to 142836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,084 DEBUG Processing 501/753 atomic regions from SNP 150133 to 150733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,144 DEBUG Processing 361/708 atomic regions from SNP 108089 to 108689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,185 DEBUG Processing 476/739 atomic regions from SNP 142536 to 143136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,300 DEBUG Processing 502/753 atomic regions from SNP 150433 to 151033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,349 DEBUG Processing 362/708 atomic regions from SNP 108389 to 108989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,387 DEBUG Processing 477/739 atomic regions from SNP 142836 to 143436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,507 DEBUG Processing 503/753 atomic regions from SNP 150733 to 151333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,555 DEBUG Processing 363/708 atomic regions from SNP 108689 to 109289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,593 DEBUG Processing 478/739 atomic regions from SNP 143136 to 143736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,708 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:51:49,722 DEBUG Processing 504/753 atomic regions from SNP 151033 to 151633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,762 DEBUG Processing 364/708 atomic regions from SNP 108989 to 109589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,804 DEBUG Processing 479/739 atomic regions from SNP 143436 to 144036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,927 DEBUG Processing 505/753 atomic regions from SNP 151333 to 151933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,967 DEBUG Processing 365/708 atomic regions from SNP 109289 to 109889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,019 DEBUG Processing 480/739 atomic regions from SNP 143736 to 144336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,133 DEBUG Processing 506/753 atomic regions from SNP 151633 to 152233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,172 DEBUG Processing 366/708 atomic regions from SNP 109589 to 110189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,236 DEBUG Processing 481/739 atomic regions from SNP 144036 to 144636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,338 DEBUG Processing 507/753 atomic regions from SNP 151933 to 152533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,376 DEBUG Processing 367/708 atomic regions from SNP 109889 to 110489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,439 DEBUG Processing 482/739 atomic regions from SNP 144336 to 144936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,549 DEBUG Processing 508/753 atomic regions from SNP 152233 to 152833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,580 DEBUG Processing 368/708 atomic regions from SNP 110189 to 110789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,641 DEBUG Processing 483/739 atomic regions from SNP 144636 to 145236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,764 DEBUG Processing 509/753 atomic regions from SNP 152533 to 153133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,788 DEBUG Processing 369/708 atomic regions from SNP 110489 to 111089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,847 DEBUG Processing 484/739 atomic regions from SNP 144936 to 145536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,976 DEBUG Processing 510/753 atomic regions from SNP 152833 to 153433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,994 DEBUG Processing 370/708 atomic regions from SNP 110789 to 111389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,054 DEBUG Processing 485/739 atomic regions from SNP 145236 to 145836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,181 DEBUG Processing 511/753 atomic regions from SNP 153133 to 153733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,199 DEBUG Processing 371/708 atomic regions from SNP 111089 to 111689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,257 DEBUG Processing 486/739 atomic regions from SNP 145536 to 146136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,387 DEBUG Processing 512/753 atomic regions from SNP 153433 to 154033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,403 DEBUG Processing 372/708 atomic regions from SNP 111389 to 111989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,463 DEBUG Processing 487/739 atomic regions from SNP 145836 to 146436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,595 DEBUG Processing 513/753 atomic regions from SNP 153733 to 154333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,609 DEBUG Processing 373/708 atomic regions from SNP 111689 to 112289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,665 DEBUG Processing 488/739 atomic regions from SNP 146136 to 146736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,801 DEBUG Processing 514/753 atomic regions from SNP 154033 to 154633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,813 DEBUG Processing 374/708 atomic regions from SNP 111989 to 112589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,874 DEBUG Processing 489/739 atomic regions from SNP 146436 to 147036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,005 DEBUG Processing 515/753 atomic regions from SNP 154333 to 154933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,027 DEBUG Processing 375/708 atomic regions from SNP 112289 to 112889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,100 DEBUG Processing 490/739 atomic regions from SNP 146736 to 147336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,209 DEBUG Processing 516/753 atomic regions from SNP 154633 to 155233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,252 DEBUG Processing 376/708 atomic regions from SNP 112589 to 113189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,315 DEBUG Processing 491/739 atomic regions from SNP 147036 to 147636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,413 DEBUG Processing 517/753 atomic regions from SNP 154933 to 155533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,456 DEBUG Processing 377/708 atomic regions from SNP 112889 to 113489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,513 DEBUG Processing 492/739 atomic regions from SNP 147336 to 147936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,645 DEBUG Processing 518/753 atomic regions from SNP 155233 to 155833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,657 DEBUG Processing 378/708 atomic regions from SNP 113189 to 113789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,711 DEBUG Processing 493/739 atomic regions from SNP 147636 to 148236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,861 DEBUG Processing 379/708 atomic regions from SNP 113489 to 114089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,871 DEBUG Processing 519/753 atomic regions from SNP 155533 to 156133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,912 DEBUG Processing 494/739 atomic regions from SNP 147936 to 148536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,067 DEBUG Processing 380/708 atomic regions from SNP 113789 to 114389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,077 DEBUG Processing 520/753 atomic regions from SNP 155833 to 156433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,117 DEBUG Processing 495/739 atomic regions from SNP 148236 to 148836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,274 DEBUG Processing 381/708 atomic regions from SNP 114089 to 114689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,282 DEBUG Processing 521/753 atomic regions from SNP 156133 to 156733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,320 DEBUG Processing 496/739 atomic regions from SNP 148536 to 149136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,432 DEBUG Subchromosome time: 240.41011545993388, subchromosome SNPs: 259003 2025-01-31 09:51:53,432 DEBUG Estimated BADs: [2.29, 0.57, 1.15, 2.29, 0.76, 4.59, 1.15, 6.88, 2.29, 0.57, 2.29, 4.59, 2.29, 0.76, 4.59, 0.76, 4.59, 0.57, 1.15, 9.17, 2.29, 6.88, 1.15, 6.88, 2.29, 0.57, 1.15, 9.17, 4.59, 16.05, 4.59, 1.15, 4.59, 1.15, 2.29] SNP counts: [10330, 3302, 11222, 2366, 15863, 14384, 3958, 2376, 8096, 4196, 1990, 6825, 14318, 12902, 1471, 4457, 6330, 9610, 5046, 1981, 3062, 8064, 929, 3191, 20990, 4130, 12410, 1493, 19326, 1281, 6594, 9437, 3916, 4036, 19121] SNP IDs counts: [10330, 3302, 11222, 2366, 15863, 14384, 3958, 2376, 8096, 4196, 1990, 6825, 14318, 12902, 1471, 4457, 6330, 9610, 5046, 1981, 3062, 8064, 929, 3191, 20990, 4130, 12410, 1493, 19326, 1281, 6594, 9437, 3916, 4036, 19121] Critical gap: 661493bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.04Mbp, 11.05Mbp, 17.63Mbp, 18.96Mbp, 28.21Mbp, 35.99Mbp, 38.14Mbp, 39.39Mbp, 44.05Mbp, 46.46Mbp, 47.59Mbp, 51.44Mbp, 59.37Mbp, 66.94Mbp, 67.79Mbp, 70.75Mbp, 74.19Mbp, 79.78Mbp, 82.65Mbp, 83.69Mbp, 85.33Mbp, 89.69Mbp, 90.31Mbp, 91.97Mbp, 103.37Mbp, 105.74Mbp, 112.82Mbp, 113.60Mbp, 124.66Mbp, 125.34Mbp, 128.86Mbp, 134.79Mbp, 136.86Mbp, 139.08Mbp, 149.74Mbp] 2025-01-31 09:51:53,432 DEBUG chr6 time: 240.4107302352786 s 2025-01-31 09:51:53,478 DEBUG Processing 382/708 atomic regions from SNP 114389 to 114989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,486 DEBUG Processing 522/753 atomic regions from SNP 156433 to 157033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,522 DEBUG Processing 497/739 atomic regions from SNP 148836 to 149436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,574 DEBUG chr6: Fitting background model for 35 segments 2025-01-31 09:51:53,687 DEBUG Processing 383/708 atomic regions from SNP 114689 to 115289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,697 DEBUG Processing 523/753 atomic regions from SNP 156733 to 157333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,728 DEBUG Processing 498/739 atomic regions from SNP 149136 to 149736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,900 DEBUG Processing 384/708 atomic regions from SNP 114989 to 115589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,913 DEBUG Processing 524/753 atomic regions from SNP 157033 to 157633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,936 DEBUG Processing 499/739 atomic regions from SNP 149436 to 150036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,116 DEBUG Processing 385/708 atomic regions from SNP 115289 to 115889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,128 DEBUG Processing 525/753 atomic regions from SNP 157333 to 157933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,143 DEBUG Processing 500/739 atomic regions from SNP 149736 to 150336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,333 DEBUG Processing 386/708 atomic regions from SNP 115589 to 116189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,339 DEBUG Processing 526/753 atomic regions from SNP 157633 to 158233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,347 DEBUG Processing 501/739 atomic regions from SNP 150036 to 150636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,543 DEBUG Processing 387/708 atomic regions from SNP 115889 to 116489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,550 DEBUG Processing 527/753 atomic regions from SNP 157933 to 158533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,551 DEBUG Processing 502/739 atomic regions from SNP 150336 to 150936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,752 DEBUG Processing 388/708 atomic regions from SNP 116189 to 116789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,753 DEBUG Processing 503/739 atomic regions from SNP 150636 to 151236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,762 DEBUG Processing 528/753 atomic regions from SNP 158233 to 158833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,954 DEBUG Processing 504/739 atomic regions from SNP 150936 to 151536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,964 DEBUG Processing 389/708 atomic regions from SNP 116489 to 117089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,976 DEBUG Processing 529/753 atomic regions from SNP 158533 to 159133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,160 DEBUG Processing 505/739 atomic regions from SNP 151236 to 151836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,176 DEBUG Processing 390/708 atomic regions from SNP 116789 to 117389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,205 DEBUG Processing 530/753 atomic regions from SNP 158833 to 159433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,376 DEBUG Processing 506/739 atomic regions from SNP 151536 to 152136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,388 DEBUG Processing 391/708 atomic regions from SNP 117089 to 117689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,441 DEBUG Processing 531/753 atomic regions from SNP 159133 to 159733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,587 DEBUG Processing 507/739 atomic regions from SNP 151836 to 152436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,603 DEBUG Processing 392/708 atomic regions from SNP 117389 to 117989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,670 DEBUG Processing 532/753 atomic regions from SNP 159433 to 160033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,786 DEBUG Processing 508/739 atomic regions from SNP 152136 to 152736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,803 DEBUG Processing 393/708 atomic regions from SNP 117689 to 118289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,898 DEBUG Processing 533/753 atomic regions from SNP 159733 to 160333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,984 DEBUG Processing 509/739 atomic regions from SNP 152436 to 153036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,005 DEBUG Processing 394/708 atomic regions from SNP 117989 to 118589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,118 DEBUG Processing 534/753 atomic regions from SNP 160033 to 160633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,184 DEBUG Processing 510/739 atomic regions from SNP 152736 to 153336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,206 DEBUG Processing 395/708 atomic regions from SNP 118289 to 118889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,343 DEBUG Processing 535/753 atomic regions from SNP 160333 to 160933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,384 DEBUG Processing 511/739 atomic regions from SNP 153036 to 153636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,414 DEBUG Processing 396/708 atomic regions from SNP 118589 to 119189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,561 DEBUG Processing 536/753 atomic regions from SNP 160633 to 161233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,586 DEBUG Processing 512/739 atomic regions from SNP 153336 to 153936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,618 DEBUG Processing 397/708 atomic regions from SNP 118889 to 119489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,778 DEBUG Processing 537/753 atomic regions from SNP 160933 to 161533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,787 DEBUG Processing 513/739 atomic regions from SNP 153636 to 154236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,822 DEBUG Processing 398/708 atomic regions from SNP 119189 to 119789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,987 DEBUG Processing 514/739 atomic regions from SNP 153936 to 154536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,992 DEBUG Processing 538/753 atomic regions from SNP 161233 to 161833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,027 DEBUG Processing 399/708 atomic regions from SNP 119489 to 120089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,188 DEBUG Processing 515/739 atomic regions from SNP 154236 to 154836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,218 DEBUG Processing 539/753 atomic regions from SNP 161533 to 162133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,233 DEBUG Processing 400/708 atomic regions from SNP 119789 to 120389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,390 DEBUG Processing 516/739 atomic regions from SNP 154536 to 155136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,436 DEBUG Processing 540/753 atomic regions from SNP 161833 to 162433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,443 DEBUG Processing 401/708 atomic regions from SNP 120089 to 120689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,594 DEBUG Processing 517/739 atomic regions from SNP 154836 to 155436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,649 DEBUG Processing 541/753 atomic regions from SNP 162133 to 162733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,652 DEBUG Processing 402/708 atomic regions from SNP 120389 to 120989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,797 DEBUG Processing 518/739 atomic regions from SNP 155136 to 155736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,863 DEBUG Processing 403/708 atomic regions from SNP 120689 to 121289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,864 DEBUG Processing 542/753 atomic regions from SNP 162433 to 163033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,997 DEBUG Processing 519/739 atomic regions from SNP 155436 to 156036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,075 DEBUG Processing 404/708 atomic regions from SNP 120989 to 121589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,076 DEBUG Processing 543/753 atomic regions from SNP 162733 to 163333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,198 DEBUG Processing 520/739 atomic regions from SNP 155736 to 156336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,284 DEBUG Processing 405/708 atomic regions from SNP 121289 to 121889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,294 DEBUG Processing 544/753 atomic regions from SNP 163033 to 163633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,400 DEBUG Processing 521/739 atomic regions from SNP 156036 to 156636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,495 DEBUG Processing 406/708 atomic regions from SNP 121589 to 122189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,512 DEBUG Processing 545/753 atomic regions from SNP 163333 to 163933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,603 DEBUG Processing 522/739 atomic regions from SNP 156336 to 156936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,701 DEBUG Processing 407/708 atomic regions from SNP 121889 to 122489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,739 DEBUG Processing 546/753 atomic regions from SNP 163633 to 164233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,804 DEBUG Processing 523/739 atomic regions from SNP 156636 to 157236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,906 DEBUG Processing 408/708 atomic regions from SNP 122189 to 122789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,952 DEBUG Processing 547/753 atomic regions from SNP 163933 to 164533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,004 DEBUG Processing 524/739 atomic regions from SNP 156936 to 157536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,110 DEBUG Processing 409/708 atomic regions from SNP 122489 to 123089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,158 DEBUG Processing 548/753 atomic regions from SNP 164233 to 164833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,219 DEBUG Processing 525/739 atomic regions from SNP 157236 to 157836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,315 DEBUG Processing 410/708 atomic regions from SNP 122789 to 123389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,365 DEBUG Processing 549/753 atomic regions from SNP 164533 to 165133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,449 DEBUG Processing 526/739 atomic regions from SNP 157536 to 158136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,521 DEBUG Processing 411/708 atomic regions from SNP 123089 to 123689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,573 DEBUG Processing 550/753 atomic regions from SNP 164833 to 165433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,684 DEBUG Processing 527/739 atomic regions from SNP 157836 to 158436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,726 DEBUG Processing 412/708 atomic regions from SNP 123389 to 123989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,778 DEBUG Processing 551/753 atomic regions from SNP 165133 to 165733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,915 DEBUG Processing 528/739 atomic regions from SNP 158136 to 158736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,931 DEBUG Processing 413/708 atomic regions from SNP 123689 to 124289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,997 DEBUG Processing 552/753 atomic regions from SNP 165433 to 166033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,134 DEBUG Processing 414/708 atomic regions from SNP 123989 to 124589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,143 DEBUG Processing 529/739 atomic regions from SNP 158436 to 159036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,213 DEBUG Processing 553/753 atomic regions from SNP 165733 to 166333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,342 DEBUG Processing 415/708 atomic regions from SNP 124289 to 124889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,368 DEBUG Processing 530/739 atomic regions from SNP 158736 to 159336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,422 DEBUG Processing 554/753 atomic regions from SNP 166033 to 166633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,556 DEBUG Processing 416/708 atomic regions from SNP 124589 to 125189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,602 DEBUG Processing 531/739 atomic regions from SNP 159036 to 159636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,629 DEBUG Processing 555/753 atomic regions from SNP 166333 to 166933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,763 DEBUG Processing 417/708 atomic regions from SNP 124889 to 125489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,831 DEBUG Processing 556/753 atomic regions from SNP 166633 to 167233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,838 DEBUG Processing 532/739 atomic regions from SNP 159336 to 159936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,976 DEBUG Processing 418/708 atomic regions from SNP 125189 to 125789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,035 DEBUG Processing 557/753 atomic regions from SNP 166933 to 167533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,065 DEBUG Processing 533/739 atomic regions from SNP 159636 to 160236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,198 DEBUG Processing 419/708 atomic regions from SNP 125489 to 126089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,240 DEBUG Processing 558/753 atomic regions from SNP 167233 to 167833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,294 DEBUG Processing 534/739 atomic regions from SNP 159936 to 160536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,420 DEBUG Processing 420/708 atomic regions from SNP 125789 to 126389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,445 DEBUG Processing 559/753 atomic regions from SNP 167533 to 168133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,523 DEBUG Processing 535/739 atomic regions from SNP 160236 to 160836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,628 DEBUG Processing 421/708 atomic regions from SNP 126089 to 126689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,652 DEBUG Processing 560/753 atomic regions from SNP 167833 to 168433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,739 DEBUG Processing 536/739 atomic regions from SNP 160536 to 161136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,837 DEBUG Processing 422/708 atomic regions from SNP 126389 to 126989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,864 DEBUG Processing 561/753 atomic regions from SNP 168133 to 168733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,971 DEBUG Processing 537/739 atomic regions from SNP 160836 to 161436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,068 DEBUG Processing 423/708 atomic regions from SNP 126689 to 127289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,072 DEBUG Processing 562/753 atomic regions from SNP 168433 to 169033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,187 DEBUG Processing 538/739 atomic regions from SNP 161136 to 161736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,277 DEBUG Processing 563/753 atomic regions from SNP 168733 to 169333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,296 DEBUG Processing 424/708 atomic regions from SNP 126989 to 127589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,387 DEBUG Processing 539/739 atomic regions from SNP 161436 to 162036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,482 DEBUG Processing 564/753 atomic regions from SNP 169033 to 169633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,522 DEBUG Processing 425/708 atomic regions from SNP 127289 to 127889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,590 DEBUG Processing 540/739 atomic regions from SNP 161736 to 162336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,687 DEBUG Processing 565/753 atomic regions from SNP 169333 to 169933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,705 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:52:02,706 DEBUG chr14: Signal quantile: 0.994. signal threshold: 18. Best RMSEA: 0.019 2025-01-31 09:52:02,745 DEBUG Processing 426/708 atomic regions from SNP 127589 to 128189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,794 DEBUG Processing 541/739 atomic regions from SNP 162036 to 162636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,915 DEBUG Processing 566/753 atomic regions from SNP 169633 to 170233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,972 DEBUG Processing 427/708 atomic regions from SNP 127889 to 128489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,002 DEBUG Processing 542/739 atomic regions from SNP 162336 to 162936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,145 DEBUG Processing 567/753 atomic regions from SNP 169933 to 170533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,204 DEBUG Processing 543/739 atomic regions from SNP 162636 to 163236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,204 DEBUG Processing 428/708 atomic regions from SNP 128189 to 128789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,365 DEBUG Processing 568/753 atomic regions from SNP 170233 to 170833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,404 DEBUG Processing 544/739 atomic regions from SNP 162936 to 163536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,411 DEBUG Processing 429/708 atomic regions from SNP 128489 to 129089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,572 DEBUG Processing 569/753 atomic regions from SNP 170533 to 171133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,605 DEBUG Processing 545/739 atomic regions from SNP 163236 to 163836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,639 DEBUG Processing 430/708 atomic regions from SNP 128789 to 129389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,779 DEBUG Processing 570/753 atomic regions from SNP 170833 to 171433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,807 DEBUG Processing 546/739 atomic regions from SNP 163536 to 164136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,869 DEBUG Processing 431/708 atomic regions from SNP 129089 to 129689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,988 DEBUG Processing 571/753 atomic regions from SNP 171133 to 171733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,008 DEBUG Processing 547/739 atomic regions from SNP 163836 to 164436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,110 DEBUG Processing 432/708 atomic regions from SNP 129389 to 129989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,193 DEBUG Processing 572/753 atomic regions from SNP 171433 to 172033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,207 DEBUG Processing 548/739 atomic regions from SNP 164136 to 164736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,337 DEBUG Processing 433/708 atomic regions from SNP 129689 to 130289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,398 DEBUG Processing 573/753 atomic regions from SNP 171733 to 172333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,410 DEBUG Processing 549/739 atomic regions from SNP 164436 to 165036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,554 DEBUG Processing 434/708 atomic regions from SNP 129989 to 130589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,599 DEBUG Processing 574/753 atomic regions from SNP 172033 to 172633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,610 DEBUG Processing 550/739 atomic regions from SNP 164736 to 165336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,753 DEBUG chr14 total SNP count: 202253 2025-01-31 09:52:04,754 DEBUG chr14 length: 124902244 2025-01-31 09:52:04,754 DEBUG ----------------------------------------- 2025-01-31 09:52:04,754 INFO Processing SNPs in chr14 2025-01-31 09:52:04,775 DEBUG Processing 435/708 atomic regions from SNP 130289 to 130889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,803 DEBUG Processing 575/753 atomic regions from SNP 172333 to 172933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,814 DEBUG Processing 551/739 atomic regions from SNP 165036 to 165636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,995 DEBUG Processing 436/708 atomic regions from SNP 130589 to 131189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,005 DEBUG Processing 576/753 atomic regions from SNP 172633 to 173233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,016 DEBUG Processing 552/739 atomic regions from SNP 165336 to 165936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,067 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 180), (180, 202253)] 2025-01-31 09:52:05,154 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:05,176 DEBUG Segmenting atomic regions: 2025-01-31 09:52:05,205 DEBUG Processing 437/708 atomic regions from SNP 130889 to 131489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,210 DEBUG Processing 577/753 atomic regions from SNP 172933 to 173533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,218 DEBUG Processing 553/739 atomic regions from SNP 165636 to 166236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,263 DEBUG Processing 1/1 atomic regions from SNP 0 to 179 for chr14 (subchromosome 1 of 2). 2025-01-31 09:52:05,272 DEBUG Unique SNPs positions in subchromosome 1: 180 2025-01-31 09:52:05,273 DEBUG Subchromosome time: 0.1184985488653183, subchromosome SNPs: 180 2025-01-31 09:52:05,322 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:05,414 DEBUG Processing 578/753 atomic regions from SNP 173233 to 173833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,421 DEBUG Processing 554/739 atomic regions from SNP 165936 to 166536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,430 DEBUG Processing 438/708 atomic regions from SNP 131189 to 131789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,619 DEBUG Processing 579/753 atomic regions from SNP 173533 to 174133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,622 DEBUG Processing 555/739 atomic regions from SNP 166236 to 166836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,664 DEBUG Processing 439/708 atomic regions from SNP 131489 to 132089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,823 DEBUG Processing 580/753 atomic regions from SNP 173833 to 174433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,825 DEBUG Processing 556/739 atomic regions from SNP 166536 to 167136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,887 DEBUG Processing 440/708 atomic regions from SNP 131789 to 132389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,024 DEBUG Processing 581/753 atomic regions from SNP 174133 to 174733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,025 DEBUG Processing 557/739 atomic regions from SNP 166836 to 167436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,119 DEBUG Processing 441/708 atomic regions from SNP 132089 to 132689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,226 DEBUG Processing 582/753 atomic regions from SNP 174433 to 175033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,229 DEBUG Processing 558/739 atomic regions from SNP 167136 to 167736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,339 DEBUG Processing 442/708 atomic regions from SNP 132389 to 132989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,426 DEBUG Processing 583/753 atomic regions from SNP 174733 to 175333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,432 DEBUG Processing 559/739 atomic regions from SNP 167436 to 168036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,550 DEBUG Processing 443/708 atomic regions from SNP 132689 to 133289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,628 DEBUG Processing 584/753 atomic regions from SNP 175033 to 175633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,635 DEBUG Processing 560/739 atomic regions from SNP 167736 to 168336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,784 DEBUG Processing 444/708 atomic regions from SNP 132989 to 133589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,830 DEBUG Processing 585/753 atomic regions from SNP 175333 to 175933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,835 DEBUG Processing 561/739 atomic regions from SNP 168036 to 168636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,012 DEBUG Processing 445/708 atomic regions from SNP 133289 to 133889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,035 DEBUG Processing 586/753 atomic regions from SNP 175633 to 176233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,040 DEBUG Processing 562/739 atomic regions from SNP 168336 to 168936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,226 DEBUG Processing 446/708 atomic regions from SNP 133589 to 134189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,238 DEBUG Processing 587/753 atomic regions from SNP 175933 to 176533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,247 DEBUG Processing 563/739 atomic regions from SNP 168636 to 169236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,445 DEBUG Processing 588/753 atomic regions from SNP 176233 to 176833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,450 DEBUG Processing 564/739 atomic regions from SNP 168936 to 169536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,455 DEBUG Processing 447/708 atomic regions from SNP 133889 to 134489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,652 DEBUG Processing 589/753 atomic regions from SNP 176533 to 177133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,654 DEBUG Processing 565/739 atomic regions from SNP 169236 to 169836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,692 DEBUG Processing 448/708 atomic regions from SNP 134189 to 134789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,858 DEBUG Processing 590/753 atomic regions from SNP 176833 to 177433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,859 DEBUG Processing 566/739 atomic regions from SNP 169536 to 170136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,917 DEBUG Processing 449/708 atomic regions from SNP 134489 to 135089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,061 DEBUG Processing 591/753 atomic regions from SNP 177133 to 177733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,062 DEBUG Processing 567/739 atomic regions from SNP 169836 to 170436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,143 DEBUG Processing 450/708 atomic regions from SNP 134789 to 135389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,266 DEBUG Processing 568/739 atomic regions from SNP 170136 to 170736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,268 DEBUG Processing 592/753 atomic regions from SNP 177433 to 178033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,349 DEBUG Processing 451/708 atomic regions from SNP 135089 to 135689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,469 DEBUG Processing 569/739 atomic regions from SNP 170436 to 171036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,472 DEBUG Processing 593/753 atomic regions from SNP 177733 to 178333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,552 DEBUG Processing 452/708 atomic regions from SNP 135389 to 135989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,673 DEBUG Processing 570/739 atomic regions from SNP 170736 to 171336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,675 DEBUG Processing 594/753 atomic regions from SNP 178033 to 178633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,753 DEBUG Processing 453/708 atomic regions from SNP 135689 to 136289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,874 DEBUG Processing 571/739 atomic regions from SNP 171036 to 171636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,877 DEBUG Processing 595/753 atomic regions from SNP 178333 to 178933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,953 DEBUG Processing 454/708 atomic regions from SNP 135989 to 136589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,074 DEBUG Processing 572/739 atomic regions from SNP 171336 to 171936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,080 DEBUG Processing 596/753 atomic regions from SNP 178633 to 179233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,154 DEBUG Processing 455/708 atomic regions from SNP 136289 to 136889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,276 DEBUG Processing 573/739 atomic regions from SNP 171636 to 172236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,284 DEBUG Processing 597/753 atomic regions from SNP 178933 to 179533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,362 DEBUG Processing 456/708 atomic regions from SNP 136589 to 137189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,479 DEBUG Processing 574/739 atomic regions from SNP 171936 to 172536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,488 DEBUG Processing 598/753 atomic regions from SNP 179233 to 179833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,565 DEBUG Processing 457/708 atomic regions from SNP 136889 to 137489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,678 DEBUG Processing 575/739 atomic regions from SNP 172236 to 172836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,690 DEBUG Processing 599/753 atomic regions from SNP 179533 to 180133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,766 DEBUG Processing 458/708 atomic regions from SNP 137189 to 137789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,877 DEBUG Processing 576/739 atomic regions from SNP 172536 to 173136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,893 DEBUG Processing 600/753 atomic regions from SNP 179833 to 180433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,966 DEBUG Processing 459/708 atomic regions from SNP 137489 to 138089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,077 DEBUG Processing 577/739 atomic regions from SNP 172836 to 173436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,095 DEBUG Processing 601/753 atomic regions from SNP 180133 to 180733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,167 DEBUG Processing 460/708 atomic regions from SNP 137789 to 138389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,276 DEBUG Processing 578/739 atomic regions from SNP 173136 to 173736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,299 DEBUG Processing 602/753 atomic regions from SNP 180433 to 181033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,367 DEBUG Processing 461/708 atomic regions from SNP 138089 to 138689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,476 DEBUG Processing 579/739 atomic regions from SNP 173436 to 174036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,502 DEBUG Processing 603/753 atomic regions from SNP 180733 to 181333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,570 DEBUG Processing 462/708 atomic regions from SNP 138389 to 138989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,677 DEBUG Processing 580/739 atomic regions from SNP 173736 to 174336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,707 DEBUG Processing 604/753 atomic regions from SNP 181033 to 181633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,769 DEBUG Processing 463/708 atomic regions from SNP 138689 to 139289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,878 DEBUG Processing 581/739 atomic regions from SNP 174036 to 174636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,912 DEBUG Processing 605/753 atomic regions from SNP 181333 to 181933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,970 DEBUG Processing 464/708 atomic regions from SNP 138989 to 139589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,080 DEBUG Processing 582/739 atomic regions from SNP 174336 to 174936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,116 DEBUG Processing 606/753 atomic regions from SNP 181633 to 182233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,169 DEBUG Processing 465/708 atomic regions from SNP 139289 to 139889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,280 DEBUG Processing 583/739 atomic regions from SNP 174636 to 175236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,320 DEBUG Processing 607/753 atomic regions from SNP 181933 to 182533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,369 DEBUG Processing 466/708 atomic regions from SNP 139589 to 140189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,480 DEBUG Processing 584/739 atomic regions from SNP 174936 to 175536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,523 DEBUG Processing 608/753 atomic regions from SNP 182233 to 182833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,569 DEBUG Processing 467/708 atomic regions from SNP 139889 to 140489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,679 DEBUG Processing 585/739 atomic regions from SNP 175236 to 175836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,726 DEBUG Processing 609/753 atomic regions from SNP 182533 to 183133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,784 DEBUG Processing 468/708 atomic regions from SNP 140189 to 140789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,879 DEBUG Processing 586/739 atomic regions from SNP 175536 to 176136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,926 DEBUG Processing 610/753 atomic regions from SNP 182833 to 183433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,996 DEBUG Processing 469/708 atomic regions from SNP 140489 to 141089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,087 DEBUG Processing 587/739 atomic regions from SNP 175836 to 176436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,130 DEBUG Processing 611/753 atomic regions from SNP 183133 to 183733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,197 DEBUG Processing 470/708 atomic regions from SNP 140789 to 141389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,291 DEBUG Processing 588/739 atomic regions from SNP 176136 to 176736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,332 DEBUG Processing 612/753 atomic regions from SNP 183433 to 184033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,399 DEBUG Processing 471/708 atomic regions from SNP 141089 to 141689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,520 DEBUG Processing 589/739 atomic regions from SNP 176436 to 177036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,534 DEBUG Processing 613/753 atomic regions from SNP 183733 to 184333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,600 DEBUG Processing 472/708 atomic regions from SNP 141389 to 141989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,728 DEBUG Processing 590/739 atomic regions from SNP 176736 to 177336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,736 DEBUG Processing 614/753 atomic regions from SNP 184033 to 184633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,802 DEBUG Processing 473/708 atomic regions from SNP 141689 to 142289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,927 DEBUG Processing 591/739 atomic regions from SNP 177036 to 177636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,938 DEBUG Processing 615/753 atomic regions from SNP 184333 to 184933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,004 DEBUG Processing 474/708 atomic regions from SNP 141989 to 142589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,139 DEBUG Processing 616/753 atomic regions from SNP 184633 to 185233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,142 DEBUG Processing 592/739 atomic regions from SNP 177336 to 177936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,204 DEBUG Processing 475/708 atomic regions from SNP 142289 to 142889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,340 DEBUG Processing 617/753 atomic regions from SNP 184933 to 185533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,376 DEBUG Processing 593/739 atomic regions from SNP 177636 to 178236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,406 DEBUG Processing 476/708 atomic regions from SNP 142589 to 143189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,541 DEBUG Processing 618/753 atomic regions from SNP 185233 to 185833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,606 DEBUG Processing 477/708 atomic regions from SNP 142889 to 143489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,610 DEBUG Processing 594/739 atomic regions from SNP 177936 to 178536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,741 DEBUG Processing 619/753 atomic regions from SNP 185533 to 186133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,809 DEBUG Processing 478/708 atomic regions from SNP 143189 to 143789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,845 DEBUG Processing 595/739 atomic regions from SNP 178236 to 178836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,943 DEBUG Processing 620/753 atomic regions from SNP 185833 to 186433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,012 DEBUG Processing 479/708 atomic regions from SNP 143489 to 144089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,080 DEBUG Processing 596/739 atomic regions from SNP 178536 to 179136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,142 DEBUG Processing 621/753 atomic regions from SNP 186133 to 186733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,215 DEBUG Processing 480/708 atomic regions from SNP 143789 to 144389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,315 DEBUG Processing 597/739 atomic regions from SNP 178836 to 179436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,345 DEBUG Processing 622/753 atomic regions from SNP 186433 to 187033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,417 DEBUG Processing 481/708 atomic regions from SNP 144089 to 144689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,549 DEBUG Processing 598/739 atomic regions from SNP 179136 to 179736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,549 DEBUG Processing 623/753 atomic regions from SNP 186733 to 187333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,619 DEBUG Processing 482/708 atomic regions from SNP 144389 to 144989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,750 DEBUG Processing 624/753 atomic regions from SNP 187033 to 187633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,776 DEBUG Processing 599/739 atomic regions from SNP 179436 to 180036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,822 DEBUG Processing 483/708 atomic regions from SNP 144689 to 145289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,955 DEBUG Processing 625/753 atomic regions from SNP 187333 to 187933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,996 DEBUG Processing 600/739 atomic regions from SNP 179736 to 180336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,025 DEBUG Processing 484/708 atomic regions from SNP 144989 to 145589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,158 DEBUG Processing 626/753 atomic regions from SNP 187633 to 188233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,213 DEBUG Processing 601/739 atomic regions from SNP 180036 to 180636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,254 DEBUG Processing 485/708 atomic regions from SNP 145289 to 145889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,360 DEBUG Processing 627/753 atomic regions from SNP 187933 to 188533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,434 DEBUG Processing 602/739 atomic regions from SNP 180336 to 180936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,472 DEBUG Processing 486/708 atomic regions from SNP 145589 to 146189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,563 DEBUG Processing 628/753 atomic regions from SNP 188233 to 188833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,657 DEBUG Processing 603/739 atomic regions from SNP 180636 to 181236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,678 DEBUG Processing 487/708 atomic regions from SNP 145889 to 146489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,764 DEBUG Processing 629/753 atomic regions from SNP 188533 to 189133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,886 DEBUG Processing 604/739 atomic regions from SNP 180936 to 181536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,898 DEBUG Processing 488/708 atomic regions from SNP 146189 to 146789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,968 DEBUG Processing 630/753 atomic regions from SNP 188833 to 189433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,115 DEBUG Processing 605/739 atomic regions from SNP 181236 to 181836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,129 DEBUG Processing 489/708 atomic regions from SNP 146489 to 147089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,177 DEBUG Processing 631/753 atomic regions from SNP 189133 to 189733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,348 DEBUG Processing 606/739 atomic regions from SNP 181536 to 182136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,357 DEBUG Processing 490/708 atomic regions from SNP 146789 to 147389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,383 DEBUG Processing 632/753 atomic regions from SNP 189433 to 190033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,574 DEBUG Processing 607/739 atomic regions from SNP 181836 to 182436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,587 DEBUG Processing 491/708 atomic regions from SNP 147089 to 147689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,592 DEBUG Processing 633/753 atomic regions from SNP 189733 to 190333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,779 DEBUG Processing 608/739 atomic regions from SNP 182136 to 182736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,799 DEBUG Processing 634/753 atomic regions from SNP 190033 to 190633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,816 DEBUG Processing 492/708 atomic regions from SNP 147389 to 147989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,980 DEBUG Processing 609/739 atomic regions from SNP 182436 to 183036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,006 DEBUG Processing 635/753 atomic regions from SNP 190333 to 190933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,022 DEBUG Processing 493/708 atomic regions from SNP 147689 to 148289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,178 DEBUG Processing 610/739 atomic regions from SNP 182736 to 183336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,212 DEBUG Processing 636/753 atomic regions from SNP 190633 to 191233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,227 DEBUG Processing 494/708 atomic regions from SNP 147989 to 148589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,375 DEBUG Processing 611/739 atomic regions from SNP 183036 to 183636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,420 DEBUG Processing 637/753 atomic regions from SNP 190933 to 191533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,445 DEBUG Processing 495/708 atomic regions from SNP 148289 to 148889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,573 DEBUG Processing 612/739 atomic regions from SNP 183336 to 183936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,631 DEBUG Processing 638/753 atomic regions from SNP 191233 to 191833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,674 DEBUG Processing 496/708 atomic regions from SNP 148589 to 149189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,770 DEBUG Processing 613/739 atomic regions from SNP 183636 to 184236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,838 DEBUG Processing 639/753 atomic regions from SNP 191533 to 192133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,908 DEBUG Processing 497/708 atomic regions from SNP 148889 to 149489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,968 DEBUG Processing 614/739 atomic regions from SNP 183936 to 184536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,063 DEBUG Processing 640/753 atomic regions from SNP 191833 to 192433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,139 DEBUG Processing 498/708 atomic regions from SNP 149189 to 149789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,169 DEBUG Processing 615/739 atomic regions from SNP 184236 to 184836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,274 DEBUG Processing 641/753 atomic regions from SNP 192133 to 192733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,345 DEBUG Processing 499/708 atomic regions from SNP 149489 to 150089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,368 DEBUG Processing 616/739 atomic regions from SNP 184536 to 185136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,477 DEBUG Processing 642/753 atomic regions from SNP 192433 to 193033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,551 DEBUG Processing 500/708 atomic regions from SNP 149789 to 150389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,570 DEBUG Processing 617/739 atomic regions from SNP 184836 to 185436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,682 DEBUG Processing 643/753 atomic regions from SNP 192733 to 193333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,766 DEBUG Processing 501/708 atomic regions from SNP 150089 to 150689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,771 DEBUG Processing 618/739 atomic regions from SNP 185136 to 185736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,887 DEBUG Processing 644/753 atomic regions from SNP 193033 to 193633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,973 DEBUG Processing 502/708 atomic regions from SNP 150389 to 150989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,974 DEBUG Processing 619/739 atomic regions from SNP 185436 to 186036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,091 DEBUG Processing 645/753 atomic regions from SNP 193333 to 193933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,177 DEBUG Processing 503/708 atomic regions from SNP 150689 to 151289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,199 DEBUG Processing 620/739 atomic regions from SNP 185736 to 186336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,293 DEBUG Processing 646/753 atomic regions from SNP 193633 to 194233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,380 DEBUG Processing 504/708 atomic regions from SNP 150989 to 151589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,427 DEBUG Processing 621/739 atomic regions from SNP 186036 to 186636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,495 DEBUG Processing 647/753 atomic regions from SNP 193933 to 194533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,584 DEBUG Processing 505/708 atomic regions from SNP 151289 to 151889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,632 DEBUG Processing 622/739 atomic regions from SNP 186336 to 186936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,699 DEBUG Processing 648/753 atomic regions from SNP 194233 to 194833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,785 DEBUG Processing 506/708 atomic regions from SNP 151589 to 152189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,832 DEBUG Processing 623/739 atomic regions from SNP 186636 to 187236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,903 DEBUG Processing 649/753 atomic regions from SNP 194533 to 195133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,986 DEBUG Processing 507/708 atomic regions from SNP 151889 to 152489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,033 DEBUG Processing 624/739 atomic regions from SNP 186936 to 187536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,105 DEBUG Processing 650/753 atomic regions from SNP 194833 to 195433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,187 DEBUG Processing 508/708 atomic regions from SNP 152189 to 152789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,234 DEBUG Processing 625/739 atomic regions from SNP 187236 to 187836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,309 DEBUG Processing 651/753 atomic regions from SNP 195133 to 195733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,388 DEBUG Processing 509/708 atomic regions from SNP 152489 to 153089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,439 DEBUG Processing 626/739 atomic regions from SNP 187536 to 188136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,512 DEBUG Processing 652/753 atomic regions from SNP 195433 to 196033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,589 DEBUG Processing 510/708 atomic regions from SNP 152789 to 153389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,662 DEBUG Processing 627/739 atomic regions from SNP 187836 to 188436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,718 DEBUG Processing 653/753 atomic regions from SNP 195733 to 196333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,794 DEBUG Processing 511/708 atomic regions from SNP 153089 to 153689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,890 DEBUG Processing 628/739 atomic regions from SNP 188136 to 188736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,923 DEBUG Processing 654/753 atomic regions from SNP 196033 to 196633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,004 DEBUG Processing 512/708 atomic regions from SNP 153389 to 153989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,128 DEBUG Processing 655/753 atomic regions from SNP 196333 to 196933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,128 DEBUG Processing 629/739 atomic regions from SNP 188436 to 189036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,206 DEBUG Processing 513/708 atomic regions from SNP 153689 to 154289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,334 DEBUG Processing 656/753 atomic regions from SNP 196633 to 197233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,349 DEBUG Processing 630/739 atomic regions from SNP 188736 to 189336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,406 DEBUG Processing 514/708 atomic regions from SNP 153989 to 154589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,540 DEBUG Processing 657/753 atomic regions from SNP 196933 to 197533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,579 DEBUG Processing 631/739 atomic regions from SNP 189036 to 189636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,611 DEBUG Processing 515/708 atomic regions from SNP 154289 to 154889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,747 DEBUG Processing 658/753 atomic regions from SNP 197233 to 197833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,801 DEBUG Processing 632/739 atomic regions from SNP 189336 to 189936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,816 DEBUG Processing 516/708 atomic regions from SNP 154589 to 155189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,953 DEBUG Processing 659/753 atomic regions from SNP 197533 to 198133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,022 DEBUG Processing 517/708 atomic regions from SNP 154889 to 155489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,029 DEBUG Processing 633/739 atomic regions from SNP 189636 to 190236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,159 DEBUG Processing 660/753 atomic regions from SNP 197833 to 198433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,229 DEBUG Processing 518/708 atomic regions from SNP 155189 to 155789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,261 DEBUG Processing 634/739 atomic regions from SNP 189936 to 190536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,364 DEBUG Processing 661/753 atomic regions from SNP 198133 to 198733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,435 DEBUG Processing 519/708 atomic regions from SNP 155489 to 156089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,493 DEBUG Processing 635/739 atomic regions from SNP 190236 to 190836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,569 DEBUG Processing 662/753 atomic regions from SNP 198433 to 199033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,640 DEBUG Processing 520/708 atomic regions from SNP 155789 to 156389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,705 DEBUG Processing 636/739 atomic regions from SNP 190536 to 191136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,795 DEBUG Processing 663/753 atomic regions from SNP 198733 to 199333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,844 DEBUG Processing 521/708 atomic regions from SNP 156089 to 156689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,907 DEBUG Processing 637/739 atomic regions from SNP 190836 to 191436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,004 DEBUG Processing 664/753 atomic regions from SNP 199033 to 199633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,049 DEBUG Processing 522/708 atomic regions from SNP 156389 to 156989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,108 DEBUG Processing 638/739 atomic regions from SNP 191136 to 191736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,211 DEBUG Processing 665/753 atomic regions from SNP 199333 to 199933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,256 DEBUG Processing 523/708 atomic regions from SNP 156689 to 157289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,309 DEBUG Processing 639/739 atomic regions from SNP 191436 to 192036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,420 DEBUG Processing 666/753 atomic regions from SNP 199633 to 200233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,461 DEBUG Processing 524/708 atomic regions from SNP 156989 to 157589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,511 DEBUG Processing 640/739 atomic regions from SNP 191736 to 192336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,626 DEBUG Processing 667/753 atomic regions from SNP 199933 to 200533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,666 DEBUG Processing 525/708 atomic regions from SNP 157289 to 157889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,713 DEBUG Processing 641/739 atomic regions from SNP 192036 to 192636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,833 DEBUG Processing 668/753 atomic regions from SNP 200233 to 200833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,871 DEBUG Processing 526/708 atomic regions from SNP 157589 to 158189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,914 DEBUG Processing 642/739 atomic regions from SNP 192336 to 192936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,039 DEBUG Processing 669/753 atomic regions from SNP 200533 to 201133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,075 DEBUG Processing 527/708 atomic regions from SNP 157889 to 158489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,114 DEBUG Processing 643/739 atomic regions from SNP 192636 to 193236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,244 DEBUG Processing 670/753 atomic regions from SNP 200833 to 201433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,287 DEBUG Processing 528/708 atomic regions from SNP 158189 to 158789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,315 DEBUG Processing 644/739 atomic regions from SNP 192936 to 193536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,451 DEBUG Processing 671/753 atomic regions from SNP 201133 to 201733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,509 DEBUG Processing 529/708 atomic regions from SNP 158489 to 159089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,514 DEBUG Processing 645/739 atomic regions from SNP 193236 to 193836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,654 DEBUG Processing 672/753 atomic regions from SNP 201433 to 202033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,716 DEBUG Processing 646/739 atomic regions from SNP 193536 to 194136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,739 DEBUG Processing 530/708 atomic regions from SNP 158789 to 159389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,869 DEBUG Processing 673/753 atomic regions from SNP 201733 to 202333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,917 DEBUG Processing 647/739 atomic regions from SNP 193836 to 194436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,949 DEBUG Processing 531/708 atomic regions from SNP 159089 to 159689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,099 DEBUG Processing 674/753 atomic regions from SNP 202033 to 202633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,118 DEBUG Processing 648/739 atomic regions from SNP 194136 to 194736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,156 DEBUG Processing 532/708 atomic regions from SNP 159389 to 159989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,319 DEBUG Processing 649/739 atomic regions from SNP 194436 to 195036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,319 DEBUG Processing 675/753 atomic regions from SNP 202333 to 202933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,361 DEBUG Processing 533/708 atomic regions from SNP 159689 to 160289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,520 DEBUG Processing 650/739 atomic regions from SNP 194736 to 195336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,549 DEBUG Processing 676/753 atomic regions from SNP 202633 to 203233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,569 DEBUG Processing 534/708 atomic regions from SNP 159989 to 160589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,722 DEBUG Processing 651/739 atomic regions from SNP 195036 to 195636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,769 DEBUG Processing 677/753 atomic regions from SNP 202933 to 203533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,777 DEBUG Processing 535/708 atomic regions from SNP 160289 to 160889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,922 DEBUG Processing 652/739 atomic regions from SNP 195336 to 195936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,984 DEBUG Processing 536/708 atomic regions from SNP 160589 to 161189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,006 DEBUG Processing 678/753 atomic regions from SNP 203233 to 203833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,123 DEBUG Processing 653/739 atomic regions from SNP 195636 to 196236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,190 DEBUG Processing 537/708 atomic regions from SNP 160889 to 161489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,226 DEBUG Processing 679/753 atomic regions from SNP 203533 to 204133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,325 DEBUG Processing 654/739 atomic regions from SNP 195936 to 196536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,393 DEBUG Processing 538/708 atomic regions from SNP 161189 to 161789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,431 DEBUG Processing 680/753 atomic regions from SNP 203833 to 204433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,526 DEBUG Processing 655/739 atomic regions from SNP 196236 to 196836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,598 DEBUG Processing 539/708 atomic regions from SNP 161489 to 162089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,642 DEBUG Processing 681/753 atomic regions from SNP 204133 to 204733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,728 DEBUG Processing 656/739 atomic regions from SNP 196536 to 197136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,802 DEBUG Processing 540/708 atomic regions from SNP 161789 to 162389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,850 DEBUG Processing 682/753 atomic regions from SNP 204433 to 205033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,927 DEBUG Processing 657/739 atomic regions from SNP 196836 to 197436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,008 DEBUG Processing 541/708 atomic regions from SNP 162089 to 162689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,058 DEBUG Processing 683/753 atomic regions from SNP 204733 to 205333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,128 DEBUG Processing 658/739 atomic regions from SNP 197136 to 197736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,218 DEBUG Processing 542/708 atomic regions from SNP 162389 to 162989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,266 DEBUG Processing 684/753 atomic regions from SNP 205033 to 205633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,328 DEBUG Processing 659/739 atomic regions from SNP 197436 to 198036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,422 DEBUG Processing 543/708 atomic regions from SNP 162689 to 163289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,499 DEBUG Processing 685/753 atomic regions from SNP 205333 to 205933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,540 DEBUG Processing 660/739 atomic regions from SNP 197736 to 198336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,625 DEBUG Processing 544/708 atomic regions from SNP 162989 to 163589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,725 DEBUG Processing 686/753 atomic regions from SNP 205633 to 206233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,738 DEBUG Processing 661/739 atomic regions from SNP 198036 to 198636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,846 DEBUG Processing 545/708 atomic regions from SNP 163289 to 163889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,927 DEBUG Processing 687/753 atomic regions from SNP 205933 to 206533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,936 DEBUG Processing 662/739 atomic regions from SNP 198336 to 198936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,059 DEBUG Processing 546/708 atomic regions from SNP 163589 to 164189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,128 DEBUG Processing 688/753 atomic regions from SNP 206233 to 206833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,139 DEBUG Processing 663/739 atomic regions from SNP 198636 to 199236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,261 DEBUG Processing 547/708 atomic regions from SNP 163889 to 164489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,330 DEBUG Processing 689/753 atomic regions from SNP 206533 to 207133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,371 DEBUG Processing 664/739 atomic regions from SNP 198936 to 199536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,462 DEBUG Processing 548/708 atomic regions from SNP 164189 to 164789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,530 DEBUG Processing 690/753 atomic regions from SNP 206833 to 207433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,606 DEBUG Processing 665/739 atomic regions from SNP 199236 to 199836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,661 DEBUG Processing 549/708 atomic regions from SNP 164489 to 165089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,732 DEBUG Processing 691/753 atomic regions from SNP 207133 to 207733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,852 DEBUG Processing 666/739 atomic regions from SNP 199536 to 200136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,867 DEBUG Processing 550/708 atomic regions from SNP 164789 to 165389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,942 DEBUG Processing 692/753 atomic regions from SNP 207433 to 208033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,079 DEBUG Processing 551/708 atomic regions from SNP 165089 to 165689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,099 DEBUG Processing 667/739 atomic regions from SNP 199836 to 200436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,164 DEBUG Processing 693/753 atomic regions from SNP 207733 to 208333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,208 DEBUG Segmenting atomic regions: 2025-01-31 09:52:29,289 DEBUG Processing 552/708 atomic regions from SNP 165389 to 165989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,298 DEBUG Processing 1/672 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,325 DEBUG Processing 668/739 atomic regions from SNP 200136 to 200736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,368 DEBUG Processing 694/753 atomic regions from SNP 208033 to 208633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,491 DEBUG Processing 2/672 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,495 DEBUG Processing 553/708 atomic regions from SNP 165689 to 166289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,545 DEBUG Processing 669/739 atomic regions from SNP 200436 to 201036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,580 DEBUG Processing 695/753 atomic regions from SNP 208333 to 208933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,686 DEBUG Processing 3/672 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,706 DEBUG Processing 554/708 atomic regions from SNP 165989 to 166589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,759 DEBUG Processing 670/739 atomic regions from SNP 200736 to 201336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,787 DEBUG Processing 696/753 atomic regions from SNP 208633 to 209233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,900 DEBUG Processing 4/672 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,914 DEBUG Processing 555/708 atomic regions from SNP 166289 to 166889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,963 DEBUG Processing 671/739 atomic regions from SNP 201036 to 201636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,995 DEBUG Processing 697/753 atomic regions from SNP 208933 to 209533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,121 DEBUG Processing 556/708 atomic regions from SNP 166589 to 167189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,124 DEBUG Processing 5/672 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,168 DEBUG Processing 672/739 atomic regions from SNP 201336 to 201936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,200 DEBUG Processing 698/753 atomic regions from SNP 209233 to 209833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,334 DEBUG Processing 6/672 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,338 DEBUG Processing 557/708 atomic regions from SNP 166889 to 167489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,372 DEBUG Processing 673/739 atomic regions from SNP 201636 to 202236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,407 DEBUG Processing 699/753 atomic regions from SNP 209533 to 210133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,526 DEBUG Processing 7/672 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,575 DEBUG Processing 558/708 atomic regions from SNP 167189 to 167789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,583 DEBUG Processing 674/739 atomic regions from SNP 201936 to 202536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,617 DEBUG Processing 700/753 atomic regions from SNP 209833 to 210433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,718 DEBUG Processing 8/672 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,801 DEBUG Processing 675/739 atomic regions from SNP 202236 to 202836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,808 DEBUG Processing 559/708 atomic regions from SNP 167489 to 168089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,828 DEBUG Processing 701/753 atomic regions from SNP 210133 to 210733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,909 DEBUG Processing 9/672 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,007 DEBUG Processing 676/739 atomic regions from SNP 202536 to 203136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,032 DEBUG Processing 560/708 atomic regions from SNP 167789 to 168389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,047 DEBUG Processing 702/753 atomic regions from SNP 210433 to 211033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,104 DEBUG Processing 10/672 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,209 DEBUG Processing 677/739 atomic regions from SNP 202836 to 203436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,242 DEBUG Processing 561/708 atomic regions from SNP 168089 to 168689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,260 DEBUG Processing 703/753 atomic regions from SNP 210733 to 211333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,297 DEBUG Processing 11/672 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,415 DEBUG Processing 678/739 atomic regions from SNP 203136 to 203736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,452 DEBUG Processing 562/708 atomic regions from SNP 168389 to 168989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,473 DEBUG Processing 704/753 atomic regions from SNP 211033 to 211633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,476 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:52:31,494 DEBUG Processing 12/672 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,645 DEBUG Processing 679/739 atomic regions from SNP 203436 to 204036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,665 DEBUG Processing 563/708 atomic regions from SNP 168689 to 169289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,688 DEBUG Processing 705/753 atomic regions from SNP 211333 to 211933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,691 DEBUG Processing 13/672 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,883 DEBUG Processing 564/708 atomic regions from SNP 168989 to 169589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,886 DEBUG Processing 680/739 atomic regions from SNP 203736 to 204336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,891 DEBUG Processing 14/672 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,903 DEBUG Processing 706/753 atomic regions from SNP 211633 to 212233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,089 DEBUG Processing 15/672 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,113 DEBUG Processing 565/708 atomic regions from SNP 169289 to 169889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,115 DEBUG Processing 707/753 atomic regions from SNP 211933 to 212533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,128 DEBUG Processing 681/739 atomic regions from SNP 204036 to 204636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,286 DEBUG Processing 16/672 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,344 DEBUG Processing 566/708 atomic regions from SNP 169589 to 170189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,350 DEBUG Processing 708/753 atomic regions from SNP 212233 to 212833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,370 DEBUG Processing 682/739 atomic regions from SNP 204336 to 204936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,480 DEBUG Processing 17/672 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,555 DEBUG Processing 567/708 atomic regions from SNP 169889 to 170489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,584 DEBUG Processing 709/753 atomic regions from SNP 212533 to 213133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,613 DEBUG Processing 683/739 atomic regions from SNP 204636 to 205236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,672 DEBUG Processing 18/672 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,762 DEBUG Processing 568/708 atomic regions from SNP 170189 to 170789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,809 DEBUG Processing 710/753 atomic regions from SNP 212833 to 213433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,852 DEBUG Processing 684/739 atomic regions from SNP 204936 to 205536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,865 DEBUG Processing 19/672 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,969 DEBUG Processing 569/708 atomic regions from SNP 170489 to 171089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,045 DEBUG Processing 711/753 atomic regions from SNP 213133 to 213733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,060 DEBUG Processing 20/672 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,090 DEBUG Processing 685/739 atomic regions from SNP 205236 to 205836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,176 DEBUG Processing 570/708 atomic regions from SNP 170789 to 171389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,256 DEBUG Processing 21/672 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,258 DEBUG Processing 712/753 atomic regions from SNP 213433 to 214033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,326 DEBUG Processing 686/739 atomic regions from SNP 205536 to 206136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,382 DEBUG Processing 571/708 atomic regions from SNP 171089 to 171689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,454 DEBUG Processing 22/672 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,470 DEBUG Processing 713/753 atomic regions from SNP 213733 to 214333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,562 DEBUG Processing 687/739 atomic regions from SNP 205836 to 206436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,600 DEBUG Processing 572/708 atomic regions from SNP 171389 to 171989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,652 DEBUG Processing 23/672 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,682 DEBUG Processing 714/753 atomic regions from SNP 214033 to 214633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,803 DEBUG Processing 688/739 atomic regions from SNP 206136 to 206736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,819 DEBUG Processing 573/708 atomic regions from SNP 171689 to 172289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,851 DEBUG Processing 24/672 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,894 DEBUG Processing 715/753 atomic regions from SNP 214333 to 214933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,037 DEBUG Processing 689/739 atomic regions from SNP 206436 to 207036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,050 DEBUG Processing 25/672 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,054 DEBUG Processing 574/708 atomic regions from SNP 171989 to 172589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,105 DEBUG Processing 716/753 atomic regions from SNP 214633 to 215233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,251 DEBUG Processing 26/672 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,268 DEBUG Processing 690/739 atomic regions from SNP 206736 to 207336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,270 DEBUG Processing 575/708 atomic regions from SNP 172289 to 172889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,317 DEBUG Processing 717/753 atomic regions from SNP 214933 to 215533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,450 DEBUG Processing 27/672 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,482 DEBUG Processing 576/708 atomic regions from SNP 172589 to 173189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,496 DEBUG Processing 691/739 atomic regions from SNP 207036 to 207636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,528 DEBUG Processing 718/753 atomic regions from SNP 215233 to 215833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,648 DEBUG Processing 28/672 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,693 DEBUG Processing 577/708 atomic regions from SNP 172889 to 173489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,716 DEBUG Processing 692/739 atomic regions from SNP 207336 to 207936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,736 DEBUG Processing 719/753 atomic regions from SNP 215533 to 216133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,848 DEBUG Processing 29/672 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,902 DEBUG Processing 578/708 atomic regions from SNP 173189 to 173789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,946 DEBUG Processing 720/753 atomic regions from SNP 215833 to 216433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,952 DEBUG Processing 693/739 atomic regions from SNP 207636 to 208236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,042 DEBUG Processing 30/672 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,114 DEBUG Processing 579/708 atomic regions from SNP 173489 to 174089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,155 DEBUG Processing 721/753 atomic regions from SNP 216133 to 216733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,187 DEBUG Processing 694/739 atomic regions from SNP 207936 to 208536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,238 DEBUG Processing 31/672 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,323 DEBUG Processing 580/708 atomic regions from SNP 173789 to 174389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,362 DEBUG Processing 722/753 atomic regions from SNP 216433 to 217033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,427 DEBUG Processing 695/739 atomic regions from SNP 208236 to 208836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,434 DEBUG Processing 32/672 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,530 DEBUG Processing 581/708 atomic regions from SNP 174089 to 174689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,572 DEBUG Processing 723/753 atomic regions from SNP 216733 to 217333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,630 DEBUG Processing 33/672 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,663 DEBUG Processing 696/739 atomic regions from SNP 208536 to 209136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,737 DEBUG Processing 582/708 atomic regions from SNP 174389 to 174989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,784 DEBUG Processing 724/753 atomic regions from SNP 217033 to 217633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,827 DEBUG Processing 34/672 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,905 DEBUG Processing 697/739 atomic regions from SNP 208836 to 209436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,945 DEBUG Processing 583/708 atomic regions from SNP 174689 to 175289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,996 DEBUG Processing 725/753 atomic regions from SNP 217333 to 217933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,025 DEBUG Processing 35/672 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,139 DEBUG Processing 698/739 atomic regions from SNP 209136 to 209736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,150 DEBUG Processing 584/708 atomic regions from SNP 174989 to 175589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,209 DEBUG Processing 726/753 atomic regions from SNP 217633 to 218233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,223 DEBUG Processing 36/672 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,358 DEBUG Processing 585/708 atomic regions from SNP 175289 to 175889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,379 DEBUG Processing 699/739 atomic regions from SNP 209436 to 210036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,423 DEBUG Processing 727/753 atomic regions from SNP 217933 to 218533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,424 DEBUG Processing 37/672 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,585 DEBUG Processing 586/708 atomic regions from SNP 175589 to 176189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,621 DEBUG Processing 38/672 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,622 DEBUG Processing 700/739 atomic regions from SNP 209736 to 210336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,635 DEBUG Processing 728/753 atomic regions from SNP 218233 to 218833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,822 DEBUG Processing 39/672 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,824 DEBUG Processing 587/708 atomic regions from SNP 175889 to 176489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,848 DEBUG Processing 729/753 atomic regions from SNP 218533 to 219133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,868 DEBUG Processing 701/739 atomic regions from SNP 210036 to 210636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,042 DEBUG Processing 40/672 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,055 DEBUG Processing 588/708 atomic regions from SNP 176189 to 176789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,061 DEBUG Processing 730/753 atomic regions from SNP 218833 to 219433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,111 DEBUG Processing 702/739 atomic regions from SNP 210336 to 210936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,240 DEBUG Processing 41/672 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,275 DEBUG Processing 731/753 atomic regions from SNP 219133 to 219733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,286 DEBUG Processing 589/708 atomic regions from SNP 176489 to 177089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,348 DEBUG Processing 703/739 atomic regions from SNP 210636 to 211236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,436 DEBUG Processing 42/672 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,487 DEBUG Processing 732/753 atomic regions from SNP 219433 to 220033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,518 DEBUG Processing 590/708 atomic regions from SNP 176789 to 177389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,591 DEBUG Processing 704/739 atomic regions from SNP 210936 to 211536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,630 DEBUG Processing 43/672 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,725 DEBUG Processing 733/753 atomic regions from SNP 219733 to 220333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,749 DEBUG Processing 591/708 atomic regions from SNP 177089 to 177689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,822 DEBUG Processing 44/672 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,833 DEBUG Processing 705/739 atomic regions from SNP 211236 to 211836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,970 DEBUG Processing 734/753 atomic regions from SNP 220033 to 220633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,990 DEBUG Processing 592/708 atomic regions from SNP 177389 to 177989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,018 DEBUG Processing 45/672 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,082 DEBUG Processing 706/739 atomic regions from SNP 211536 to 212136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,217 DEBUG Processing 46/672 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,220 DEBUG Processing 735/753 atomic regions from SNP 220333 to 220933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,235 DEBUG Processing 593/708 atomic regions from SNP 177689 to 178289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,322 DEBUG Processing 707/739 atomic regions from SNP 211836 to 212436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,414 DEBUG Processing 47/672 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,462 DEBUG Processing 736/753 atomic regions from SNP 220633 to 221233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,479 DEBUG Processing 594/708 atomic regions from SNP 177989 to 178589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,562 DEBUG Processing 708/739 atomic regions from SNP 212136 to 212736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,608 DEBUG Processing 48/672 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,706 DEBUG Processing 737/753 atomic regions from SNP 220933 to 221533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,723 DEBUG Processing 595/708 atomic regions from SNP 178289 to 178889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,796 DEBUG Processing 709/739 atomic regions from SNP 212436 to 213036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,800 DEBUG Processing 49/672 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,953 DEBUG Processing 738/753 atomic regions from SNP 221233 to 221833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,967 DEBUG Processing 596/708 atomic regions from SNP 178589 to 179189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,993 DEBUG Processing 50/672 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,032 DEBUG Processing 710/739 atomic regions from SNP 212736 to 213336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,187 DEBUG Processing 739/753 atomic regions from SNP 221533 to 222133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,189 DEBUG Processing 51/672 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,211 DEBUG Processing 597/708 atomic regions from SNP 178889 to 179489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,259 DEBUG Processing 711/739 atomic regions from SNP 213036 to 213636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,384 DEBUG Processing 52/672 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,420 DEBUG Processing 740/753 atomic regions from SNP 221833 to 222433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,453 DEBUG Processing 598/708 atomic regions from SNP 179189 to 179789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,484 DEBUG Processing 712/739 atomic regions from SNP 213336 to 213936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,584 DEBUG Processing 53/672 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,668 DEBUG Processing 741/753 atomic regions from SNP 222133 to 222733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,699 DEBUG Processing 599/708 atomic regions from SNP 179489 to 180089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,704 DEBUG Processing 713/739 atomic regions from SNP 213636 to 214236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,788 DEBUG Processing 54/672 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,922 DEBUG Processing 742/753 atomic regions from SNP 222433 to 223033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,938 DEBUG Processing 714/739 atomic regions from SNP 213936 to 214536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,943 DEBUG Processing 600/708 atomic regions from SNP 179789 to 180389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,981 DEBUG Processing 55/672 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,155 DEBUG Processing 715/739 atomic regions from SNP 214236 to 214836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,171 DEBUG Processing 743/753 atomic regions from SNP 222733 to 223333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,175 DEBUG Processing 56/672 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,186 DEBUG Processing 601/708 atomic regions from SNP 180089 to 180689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,362 DEBUG Processing 716/739 atomic regions from SNP 214536 to 215136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,373 DEBUG Processing 57/672 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,421 DEBUG Processing 744/753 atomic regions from SNP 223033 to 223633 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,433 DEBUG Processing 602/708 atomic regions from SNP 180389 to 180989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,567 DEBUG Processing 58/672 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,577 DEBUG Processing 717/739 atomic regions from SNP 214836 to 215436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,658 DEBUG Processing 603/708 atomic regions from SNP 180689 to 181289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,668 DEBUG Processing 745/753 atomic regions from SNP 223333 to 223933 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,756 DEBUG Processing 59/672 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,788 DEBUG Processing 718/739 atomic regions from SNP 215136 to 215736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,888 DEBUG Processing 604/708 atomic regions from SNP 180989 to 181589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,906 DEBUG Processing 746/753 atomic regions from SNP 223633 to 224233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,946 DEBUG Processing 60/672 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,001 DEBUG Processing 719/739 atomic regions from SNP 215436 to 216036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,115 DEBUG Processing 747/753 atomic regions from SNP 223933 to 224533 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,124 DEBUG Processing 605/708 atomic regions from SNP 181289 to 181889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,138 DEBUG Processing 61/672 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,216 DEBUG Processing 720/739 atomic regions from SNP 215736 to 216336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,326 DEBUG Processing 748/753 atomic regions from SNP 224233 to 224833 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,333 DEBUG Processing 62/672 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,358 DEBUG Processing 606/708 atomic regions from SNP 181589 to 182189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,426 DEBUG Processing 721/739 atomic regions from SNP 216036 to 216636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,530 DEBUG Processing 63/672 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,538 DEBUG Processing 749/753 atomic regions from SNP 224533 to 225133 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,588 DEBUG Processing 607/708 atomic regions from SNP 181889 to 182489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,655 DEBUG Processing 722/739 atomic regions from SNP 216336 to 216936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,742 DEBUG Processing 64/672 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,748 DEBUG Processing 750/753 atomic regions from SNP 224833 to 225433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,796 DEBUG Processing 608/708 atomic regions from SNP 182189 to 182789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,871 DEBUG Processing 723/739 atomic regions from SNP 216636 to 217236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,957 DEBUG Processing 65/672 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,958 DEBUG Processing 751/753 atomic regions from SNP 225133 to 225733 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,005 DEBUG Processing 609/708 atomic regions from SNP 182489 to 183089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,098 DEBUG Processing 724/739 atomic regions from SNP 216936 to 217536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,157 DEBUG Processing 66/672 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,170 DEBUG Processing 752/753 atomic regions from SNP 225433 to 226033 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,220 DEBUG Processing 610/708 atomic regions from SNP 182789 to 183389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,329 DEBUG Processing 725/739 atomic regions from SNP 217236 to 217836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,361 DEBUG Processing 67/672 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,380 DEBUG Processing 753/753 atomic regions from SNP 225733 to 226333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,434 DEBUG Processing 611/708 atomic regions from SNP 183089 to 183689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,501 DEBUG Unique SNPs positions in subchromosome 1: 226334 2025-01-31 09:52:42,549 DEBUG Processing 726/739 atomic regions from SNP 217536 to 218136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,556 DEBUG Processing 68/672 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,645 DEBUG Processing 612/708 atomic regions from SNP 183389 to 183989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,746 DEBUG Processing 69/672 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,785 DEBUG Processing 727/739 atomic regions from SNP 217836 to 218436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,852 DEBUG Processing 613/708 atomic regions from SNP 183689 to 184289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,938 DEBUG Processing 70/672 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,990 DEBUG Processing 728/739 atomic regions from SNP 218136 to 218736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,062 DEBUG Processing 614/708 atomic regions from SNP 183989 to 184589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,130 DEBUG Processing 71/672 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,199 DEBUG Processing 729/739 atomic regions from SNP 218436 to 219036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,269 DEBUG Processing 615/708 atomic regions from SNP 184289 to 184889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,344 DEBUG Processing 72/672 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,403 DEBUG Processing 730/739 atomic regions from SNP 218736 to 219336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,471 DEBUG Processing 616/708 atomic regions from SNP 184589 to 185189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,556 DEBUG Processing 73/672 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,604 DEBUG Processing 731/739 atomic regions from SNP 219036 to 219636 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,677 DEBUG Processing 617/708 atomic regions from SNP 184889 to 185489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,780 DEBUG Processing 74/672 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,808 DEBUG Processing 732/739 atomic regions from SNP 219336 to 219936 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,896 DEBUG Processing 618/708 atomic regions from SNP 185189 to 185789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,010 DEBUG Processing 75/672 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,011 DEBUG Processing 733/739 atomic regions from SNP 219636 to 220236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,127 DEBUG Processing 619/708 atomic regions from SNP 185489 to 186089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,215 DEBUG Processing 734/739 atomic regions from SNP 219936 to 220536 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,239 DEBUG Processing 76/672 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,360 DEBUG Processing 620/708 atomic regions from SNP 185789 to 186389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,418 DEBUG Processing 735/739 atomic regions from SNP 220236 to 220836 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,462 DEBUG Processing 77/672 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,575 DEBUG Processing 621/708 atomic regions from SNP 186089 to 186689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,620 DEBUG Processing 736/739 atomic regions from SNP 220536 to 221136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,691 DEBUG Processing 78/672 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,783 DEBUG Processing 622/708 atomic regions from SNP 186389 to 186989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,829 DEBUG Processing 737/739 atomic regions from SNP 220836 to 221436 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,908 DEBUG Processing 79/672 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,988 DEBUG Processing 623/708 atomic regions from SNP 186689 to 187289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,035 DEBUG Processing 738/739 atomic regions from SNP 221136 to 221736 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,128 DEBUG Processing 80/672 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,200 DEBUG Processing 624/708 atomic regions from SNP 186989 to 187589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,236 DEBUG Processing 739/739 atomic regions from SNP 221436 to 222036 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,331 DEBUG Processing 81/672 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,346 DEBUG Unique SNPs positions in subchromosome 1: 222037 2025-01-31 09:52:45,409 DEBUG Processing 625/708 atomic regions from SNP 187289 to 187889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,519 DEBUG Processing 82/672 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,621 DEBUG Processing 626/708 atomic regions from SNP 187589 to 188189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,736 DEBUG Processing 83/672 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,822 DEBUG Processing 627/708 atomic regions from SNP 187889 to 188489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,955 DEBUG Processing 84/672 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,024 DEBUG Processing 628/708 atomic regions from SNP 188189 to 188789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,174 DEBUG Processing 85/672 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,229 DEBUG Processing 629/708 atomic regions from SNP 188489 to 189089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,390 DEBUG Processing 86/672 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,435 DEBUG Processing 630/708 atomic regions from SNP 188789 to 189389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,600 DEBUG Processing 87/672 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,660 DEBUG Processing 631/708 atomic regions from SNP 189089 to 189689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,803 DEBUG Processing 88/672 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,887 DEBUG Processing 632/708 atomic regions from SNP 189389 to 189989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,991 DEBUG Processing 89/672 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,111 DEBUG Processing 633/708 atomic regions from SNP 189689 to 190289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,183 DEBUG Processing 90/672 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,336 DEBUG Processing 634/708 atomic regions from SNP 189989 to 190589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,376 DEBUG Processing 91/672 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,568 DEBUG Processing 92/672 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,570 DEBUG Processing 635/708 atomic regions from SNP 190289 to 190889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,762 DEBUG Processing 93/672 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,780 DEBUG Processing 636/708 atomic regions from SNP 190589 to 191189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,954 DEBUG Processing 94/672 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,007 DEBUG Processing 637/708 atomic regions from SNP 190889 to 191489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,144 DEBUG Processing 95/672 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,239 DEBUG Processing 638/708 atomic regions from SNP 191189 to 191789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,334 DEBUG Processing 96/672 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,455 DEBUG Processing 639/708 atomic regions from SNP 191489 to 192089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,523 DEBUG Processing 97/672 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,656 DEBUG Processing 640/708 atomic regions from SNP 191789 to 192389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,712 DEBUG Processing 98/672 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,857 DEBUG Processing 641/708 atomic regions from SNP 192089 to 192689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,901 DEBUG Processing 99/672 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,059 DEBUG Processing 642/708 atomic regions from SNP 192389 to 192989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,090 DEBUG Processing 100/672 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,263 DEBUG Processing 643/708 atomic regions from SNP 192689 to 193289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,298 DEBUG Processing 101/672 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,467 DEBUG Processing 644/708 atomic regions from SNP 192989 to 193589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,513 DEBUG Processing 102/672 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,674 DEBUG Processing 645/708 atomic regions from SNP 193289 to 193889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,708 DEBUG Processing 103/672 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,878 DEBUG Processing 646/708 atomic regions from SNP 193589 to 194189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,902 DEBUG Processing 104/672 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,085 DEBUG Processing 647/708 atomic regions from SNP 193889 to 194489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,098 DEBUG Processing 105/672 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,292 DEBUG Processing 648/708 atomic regions from SNP 194189 to 194789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,293 DEBUG Processing 106/672 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,495 DEBUG Processing 649/708 atomic regions from SNP 194489 to 195089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,497 DEBUG Processing 107/672 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,717 DEBUG Processing 650/708 atomic regions from SNP 194789 to 195389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,720 DEBUG Processing 108/672 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,943 DEBUG Processing 109/672 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,952 DEBUG Processing 651/708 atomic regions from SNP 195089 to 195689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,144 DEBUG Processing 110/672 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,157 DEBUG Processing 652/708 atomic regions from SNP 195389 to 195989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,350 DEBUG Processing 111/672 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,365 DEBUG Processing 653/708 atomic regions from SNP 195689 to 196289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,571 DEBUG Processing 112/672 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,576 DEBUG Processing 654/708 atomic regions from SNP 195989 to 196589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,666 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:52:51,667 DEBUG chr9: Signal quantile: 0.989. signal threshold: 18. Best RMSEA: 0.012 2025-01-31 09:52:51,779 DEBUG Processing 113/672 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,788 DEBUG Processing 655/708 atomic regions from SNP 196289 to 196889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,984 DEBUG Processing 114/672 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,993 DEBUG Processing 656/708 atomic regions from SNP 196589 to 197189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,191 DEBUG Processing 115/672 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,205 DEBUG Processing 657/708 atomic regions from SNP 196889 to 197489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,387 DEBUG Processing 116/672 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,415 DEBUG Processing 658/708 atomic regions from SNP 197189 to 197789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,580 DEBUG Processing 117/672 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,617 DEBUG Processing 659/708 atomic regions from SNP 197489 to 198089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,779 DEBUG Processing 118/672 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,823 DEBUG Processing 660/708 atomic regions from SNP 197789 to 198389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,983 DEBUG Processing 119/672 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,034 DEBUG Processing 661/708 atomic regions from SNP 198089 to 198689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,177 DEBUG Processing 120/672 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,235 DEBUG Processing 662/708 atomic regions from SNP 198389 to 198989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,369 DEBUG Processing 121/672 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,437 DEBUG Processing 663/708 atomic regions from SNP 198689 to 199289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,564 DEBUG Processing 122/672 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,642 DEBUG Processing 664/708 atomic regions from SNP 198989 to 199589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,711 DEBUG chr9 total SNP count: 219026 2025-01-31 09:52:53,711 DEBUG chr9 length: 124595110 2025-01-31 09:52:53,711 DEBUG ----------------------------------------- 2025-01-31 09:52:53,711 INFO Processing SNPs in chr9 2025-01-31 09:52:53,758 DEBUG Processing 123/672 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,847 DEBUG Processing 665/708 atomic regions from SNP 199289 to 199889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,926 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 219026)] 2025-01-31 09:52:53,949 DEBUG Processing 124/672 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,050 DEBUG Processing 666/708 atomic regions from SNP 199589 to 200189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,071 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:54,137 DEBUG Processing 125/672 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,251 DEBUG Processing 667/708 atomic regions from SNP 199889 to 200489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,326 DEBUG Processing 126/672 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,455 DEBUG Processing 668/708 atomic regions from SNP 200189 to 200789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,514 DEBUG Processing 127/672 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,660 DEBUG Processing 669/708 atomic regions from SNP 200489 to 201089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,703 DEBUG Processing 128/672 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,879 DEBUG Processing 670/708 atomic regions from SNP 200789 to 201389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,888 DEBUG Processing 129/672 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,081 DEBUG Processing 130/672 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,096 DEBUG Processing 671/708 atomic regions from SNP 201089 to 201689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,271 DEBUG Processing 131/672 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,296 DEBUG Processing 672/708 atomic regions from SNP 201389 to 201989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,478 DEBUG Processing 132/672 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,511 DEBUG Processing 673/708 atomic regions from SNP 201689 to 202289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,528 DEBUG Subchromosome time: 199.4110093638301, subchromosome SNPs: 226334 2025-01-31 09:52:55,529 DEBUG Estimated BADs: [2.45, 24.48, 1.22, 2.45, 0.82, 2.45, 1.22, 2.45, 4.90, 2.45, 0.49, 1.22, 0.61, 2.45, 7.34, 0.49, 2.45, 1.22, 2.45, 7.34, 2.45, 24.48, 2.45, 0.82, 2.45, 0.61, 2.45, 1.22, 12.24, 2.45, 1.22] SNP counts: [4791, 98, 2919, 13042, 3327, 22556, 15592, 2901, 6406, 5976, 5415, 6903, 5082, 3066, 8983, 3265, 10513, 4482, 2171, 5349, 1969, 3924, 34009, 16213, 5672, 1789, 18011, 5371, 3636, 915, 1988] SNP IDs counts: [4791, 98, 2919, 13042, 3327, 22556, 15592, 2901, 6406, 5976, 5415, 6903, 5082, 3066, 8983, 3265, 10513, 4482, 2171, 5349, 1969, 3924, 34009, 16213, 5672, 1789, 18011, 5371, 3636, 915, 1988] Critical gap: 615566bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 5.80Mbp, 5.85Mbp, 7.66Mbp, 14.93Mbp, 16.91Mbp, 29.52Mbp, 38.49Mbp, 40.11Mbp, 43.52Mbp, 46.80Mbp, 50.09Mbp, 54.13Mbp, 57.14Mbp, 59.21Mbp, 63.98Mbp, 66.05Mbp, 71.79Mbp, 74.35Mbp, 75.55Mbp, 78.38Mbp, 79.61Mbp, 81.65Mbp, 100.66Mbp, 109.89Mbp, 113.06Mbp, 114.06Mbp, 123.91Mbp, 126.90Mbp, 128.81Mbp, 129.37Mbp, 130.69Mbp] 2025-01-31 09:52:55,529 DEBUG chr10 time: 199.41152251698077 s 2025-01-31 09:52:55,650 DEBUG chr10: Fitting background model for 31 segments 2025-01-31 09:52:55,698 DEBUG Processing 133/672 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,724 DEBUG Processing 674/708 atomic regions from SNP 201989 to 202589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,908 DEBUG Processing 134/672 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,929 DEBUG Processing 675/708 atomic regions from SNP 202289 to 202889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,110 DEBUG Processing 135/672 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,136 DEBUG Processing 676/708 atomic regions from SNP 202589 to 203189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,326 DEBUG Processing 136/672 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,351 DEBUG Processing 677/708 atomic regions from SNP 202889 to 203489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,550 DEBUG Processing 137/672 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,583 DEBUG Processing 678/708 atomic regions from SNP 203189 to 203789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,771 DEBUG Processing 138/672 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,788 DEBUG Processing 679/708 atomic regions from SNP 203489 to 204089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,993 DEBUG Processing 680/708 atomic regions from SNP 203789 to 204389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,995 DEBUG Processing 139/672 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,197 DEBUG Processing 681/708 atomic regions from SNP 204089 to 204689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,221 DEBUG Processing 140/672 atomic regions from SNP 41839 to 42440 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,425 DEBUG Processing 682/708 atomic regions from SNP 204389 to 204989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,447 DEBUG Processing 141/672 atomic regions from SNP 42140 to 42741 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,659 DEBUG Processing 683/708 atomic regions from SNP 204689 to 205289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,670 DEBUG Processing 142/672 atomic regions from SNP 42441 to 43042 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,889 DEBUG Processing 143/672 atomic regions from SNP 42742 to 43343 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,896 DEBUG Processing 684/708 atomic regions from SNP 204989 to 205589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,097 DEBUG Processing 144/672 atomic regions from SNP 43043 to 43644 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,135 DEBUG Processing 685/708 atomic regions from SNP 205289 to 205889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,318 DEBUG Processing 145/672 atomic regions from SNP 43344 to 43945 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,370 DEBUG Processing 686/708 atomic regions from SNP 205589 to 206189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,544 DEBUG Processing 146/672 atomic regions from SNP 43645 to 44246 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,604 DEBUG Processing 687/708 atomic regions from SNP 205889 to 206489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,763 DEBUG Processing 147/672 atomic regions from SNP 43946 to 44547 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,835 DEBUG Processing 688/708 atomic regions from SNP 206189 to 206789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,957 DEBUG Processing 148/672 atomic regions from SNP 44247 to 44848 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,068 DEBUG Processing 689/708 atomic regions from SNP 206489 to 207089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,158 DEBUG Processing 149/672 atomic regions from SNP 44548 to 45149 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,296 DEBUG Processing 690/708 atomic regions from SNP 206789 to 207389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,347 DEBUG Processing 150/672 atomic regions from SNP 44849 to 45450 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,528 DEBUG Processing 691/708 atomic regions from SNP 207089 to 207689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,535 DEBUG Processing 151/672 atomic regions from SNP 45150 to 45751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,724 DEBUG Processing 152/672 atomic regions from SNP 45451 to 46052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,764 DEBUG Processing 692/708 atomic regions from SNP 207389 to 207989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,913 DEBUG Processing 153/672 atomic regions from SNP 45752 to 46353 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,992 DEBUG Processing 693/708 atomic regions from SNP 207689 to 208289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,118 DEBUG Processing 154/672 atomic regions from SNP 46053 to 46654 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,196 DEBUG Processing 694/708 atomic regions from SNP 207989 to 208589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,323 DEBUG Processing 155/672 atomic regions from SNP 46354 to 46955 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,407 DEBUG Processing 695/708 atomic regions from SNP 208289 to 208889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,512 DEBUG Processing 156/672 atomic regions from SNP 46655 to 47256 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,624 DEBUG Processing 696/708 atomic regions from SNP 208589 to 209189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,705 DEBUG Processing 157/672 atomic regions from SNP 46956 to 47557 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,830 DEBUG Processing 697/708 atomic regions from SNP 208889 to 209489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,900 DEBUG Processing 158/672 atomic regions from SNP 47257 to 47858 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,059 DEBUG Processing 698/708 atomic regions from SNP 209189 to 209789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,104 DEBUG Processing 159/672 atomic regions from SNP 47558 to 48159 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,296 DEBUG Processing 699/708 atomic regions from SNP 209489 to 210089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,312 DEBUG Processing 160/672 atomic regions from SNP 47859 to 48460 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,532 DEBUG Processing 700/708 atomic regions from SNP 209789 to 210389 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,535 DEBUG Processing 161/672 atomic regions from SNP 48160 to 48761 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,759 DEBUG Processing 701/708 atomic regions from SNP 210089 to 210689 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,762 DEBUG Processing 162/672 atomic regions from SNP 48461 to 49062 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,967 DEBUG Processing 702/708 atomic regions from SNP 210389 to 210989 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,979 DEBUG Processing 163/672 atomic regions from SNP 48762 to 49363 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,170 DEBUG Processing 703/708 atomic regions from SNP 210689 to 211289 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,180 DEBUG Processing 164/672 atomic regions from SNP 49063 to 49664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,371 DEBUG Processing 165/672 atomic regions from SNP 49364 to 49965 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,390 DEBUG Processing 704/708 atomic regions from SNP 210989 to 211589 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,562 DEBUG Processing 166/672 atomic regions from SNP 49665 to 50266 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,611 DEBUG Processing 705/708 atomic regions from SNP 211289 to 211889 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,753 DEBUG Processing 167/672 atomic regions from SNP 49966 to 50567 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,823 DEBUG Processing 706/708 atomic regions from SNP 211589 to 212189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,942 DEBUG Processing 168/672 atomic regions from SNP 50267 to 50868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,039 DEBUG Processing 707/708 atomic regions from SNP 211889 to 212489 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,130 DEBUG Processing 169/672 atomic regions from SNP 50568 to 51169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,246 DEBUG Processing 708/708 atomic regions from SNP 212189 to 212789 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,320 DEBUG Processing 170/672 atomic regions from SNP 50869 to 51470 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,354 DEBUG Unique SNPs positions in subchromosome 3: 212790 2025-01-31 09:53:03,510 DEBUG Processing 171/672 atomic regions from SNP 51170 to 51771 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,700 DEBUG Processing 172/672 atomic regions from SNP 51471 to 52072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,887 DEBUG Processing 173/672 atomic regions from SNP 51772 to 52372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,074 DEBUG Processing 174/672 atomic regions from SNP 52072 to 52672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,268 DEBUG Processing 175/672 atomic regions from SNP 52372 to 52972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,472 DEBUG Processing 176/672 atomic regions from SNP 52672 to 53272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,673 DEBUG Processing 177/672 atomic regions from SNP 52972 to 53572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,856 DEBUG Processing 178/672 atomic regions from SNP 53272 to 53872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,042 DEBUG Processing 179/672 atomic regions from SNP 53572 to 54172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,227 DEBUG Processing 180/672 atomic regions from SNP 53872 to 54472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,411 DEBUG Processing 181/672 atomic regions from SNP 54172 to 54772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,595 DEBUG Processing 182/672 atomic regions from SNP 54472 to 55072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,781 DEBUG Processing 183/672 atomic regions from SNP 54772 to 55372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,968 DEBUG Processing 184/672 atomic regions from SNP 55072 to 55672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,158 DEBUG Processing 185/672 atomic regions from SNP 55372 to 55972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,350 DEBUG Processing 186/672 atomic regions from SNP 55672 to 56272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,539 DEBUG Processing 187/672 atomic regions from SNP 55972 to 56572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,733 DEBUG Processing 188/672 atomic regions from SNP 56272 to 56872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,923 DEBUG Processing 189/672 atomic regions from SNP 56572 to 57172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,118 DEBUG Processing 190/672 atomic regions from SNP 56872 to 57472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,309 DEBUG Processing 191/672 atomic regions from SNP 57172 to 57772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,498 DEBUG Processing 192/672 atomic regions from SNP 57472 to 58072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,691 DEBUG Processing 193/672 atomic regions from SNP 57772 to 58372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,881 DEBUG Processing 194/672 atomic regions from SNP 58072 to 58672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,073 DEBUG Processing 195/672 atomic regions from SNP 58372 to 58972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,264 DEBUG Processing 196/672 atomic regions from SNP 58672 to 59272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,455 DEBUG Processing 197/672 atomic regions from SNP 58972 to 59572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,647 DEBUG Processing 198/672 atomic regions from SNP 59272 to 59872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,861 DEBUG Processing 199/672 atomic regions from SNP 59572 to 60172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,070 DEBUG Processing 200/672 atomic regions from SNP 59872 to 60472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,257 DEBUG Processing 201/672 atomic regions from SNP 60172 to 60772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,448 DEBUG Processing 202/672 atomic regions from SNP 60472 to 61072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,636 DEBUG Processing 203/672 atomic regions from SNP 60772 to 61372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,828 DEBUG Processing 204/672 atomic regions from SNP 61072 to 61672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,019 DEBUG Processing 205/672 atomic regions from SNP 61372 to 61972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,220 DEBUG Processing 206/672 atomic regions from SNP 61672 to 62272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,409 DEBUG Processing 207/672 atomic regions from SNP 61972 to 62572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,600 DEBUG Processing 208/672 atomic regions from SNP 62272 to 62872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,822 DEBUG Processing 209/672 atomic regions from SNP 62572 to 63172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,028 DEBUG Processing 210/672 atomic regions from SNP 62872 to 63472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,239 DEBUG Processing 211/672 atomic regions from SNP 63172 to 63772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,432 DEBUG Processing 212/672 atomic regions from SNP 63472 to 64072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,618 DEBUG Processing 213/672 atomic regions from SNP 63772 to 64372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,621 DEBUG Subchromosome time: 206.558293197304, subchromosome SNPs: 222037 2025-01-31 09:53:11,621 DEBUG Estimated BADs: [5.80, 0.41, 1.45, 5.80, 0.73, 2.90, 5.80, 0.73, 1.45, 2.90, 0.97, 2.90, 0.48, 1.45, 20.31, 0.73, 14.50, 1.45, 20.31, 8.70, 1.45, 8.70, 0.73, 2.90, 14.50, 2.90, 5.80, 0.58, 1.45, 8.70, 2.90, 8.70, 2.90, 5.80, 17.41, 5.80, 29.01, 2.90] SNP counts: [2746, 5182, 3390, 10717, 4193, 10861, 3833, 4800, 5648, 6966, 11076, 9321, 8681, 5417, 101, 5563, 261, 15101, 2217, 2609, 4033, 424, 1492, 13385, 2932, 16384, 4813, 11387, 2809, 5006, 6320, 2380, 8778, 4695, 8711, 4838, 99, 4868] SNP IDs counts: [2746, 5182, 3390, 10717, 4193, 10861, 3833, 4800, 5648, 6966, 11076, 9321, 8681, 5417, 101, 5563, 261, 15101, 2217, 2609, 4033, 424, 1492, 13385, 2932, 16384, 4813, 11387, 2809, 5006, 6320, 2380, 8778, 4695, 8711, 4838, 99, 4868] Critical gap: 615328bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.68Mbp, 7.85Mbp, 9.71Mbp, 15.38Mbp, 17.84Mbp, 25.55Mbp, 27.62Mbp, 30.44Mbp, 33.59Mbp, 37.36Mbp, 43.92Mbp, 48.98Mbp, 53.99Mbp, 57.49Mbp, 57.54Mbp, 60.86Mbp, 60.99Mbp, 69.79Mbp, 70.94Mbp, 72.54Mbp, 75.03Mbp, 75.27Mbp, 76.16Mbp, 83.57Mbp, 85.09Mbp, 93.91Mbp, 96.50Mbp, 103.01Mbp, 104.53Mbp, 107.27Mbp, 110.60Mbp, 111.85Mbp, 116.87Mbp, 119.35Mbp, 123.99Mbp, 126.55Mbp, 126.60Mbp, 129.40Mbp] 2025-01-31 09:53:11,621 DEBUG chr8 time: 206.558949559927 s 2025-01-31 09:53:11,744 DEBUG chr8: Fitting background model for 38 segments 2025-01-31 09:53:11,806 DEBUG Processing 214/672 atomic regions from SNP 64072 to 64672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,993 DEBUG Processing 215/672 atomic regions from SNP 64372 to 64972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,180 DEBUG Processing 216/672 atomic regions from SNP 64672 to 65272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,375 DEBUG Processing 217/672 atomic regions from SNP 64972 to 65572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,586 DEBUG Processing 218/672 atomic regions from SNP 65272 to 65872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,786 DEBUG Processing 219/672 atomic regions from SNP 65572 to 66172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,002 DEBUG Processing 220/672 atomic regions from SNP 65872 to 66472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,216 DEBUG Processing 221/672 atomic regions from SNP 66172 to 66772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,432 DEBUG Processing 222/672 atomic regions from SNP 66472 to 67072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,647 DEBUG Processing 223/672 atomic regions from SNP 66772 to 67372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,841 DEBUG Processing 224/672 atomic regions from SNP 67072 to 67672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,030 DEBUG Processing 225/672 atomic regions from SNP 67372 to 67972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,216 DEBUG Processing 226/672 atomic regions from SNP 67672 to 68272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,401 DEBUG Processing 227/672 atomic regions from SNP 67972 to 68572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,449 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:53:14,610 DEBUG Processing 228/672 atomic regions from SNP 68272 to 68872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,810 DEBUG Processing 229/672 atomic regions from SNP 68572 to 69172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,000 DEBUG Processing 230/672 atomic regions from SNP 68872 to 69472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,187 DEBUG Processing 231/672 atomic regions from SNP 69172 to 69772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,377 DEBUG Processing 232/672 atomic regions from SNP 69472 to 70072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,583 DEBUG Processing 233/672 atomic regions from SNP 69772 to 70372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,770 DEBUG Processing 234/672 atomic regions from SNP 70072 to 70672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,955 DEBUG Processing 235/672 atomic regions from SNP 70372 to 70972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,141 DEBUG Processing 236/672 atomic regions from SNP 70672 to 71272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,328 DEBUG Processing 237/672 atomic regions from SNP 70972 to 71572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,514 DEBUG Processing 238/672 atomic regions from SNP 71272 to 71872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,699 DEBUG Processing 239/672 atomic regions from SNP 71572 to 72172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,885 DEBUG Processing 240/672 atomic regions from SNP 71872 to 72472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,076 DEBUG Processing 241/672 atomic regions from SNP 72172 to 72772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,295 DEBUG Processing 242/672 atomic regions from SNP 72472 to 73072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,516 DEBUG Processing 243/672 atomic regions from SNP 72772 to 73372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,727 DEBUG Processing 244/672 atomic regions from SNP 73072 to 73672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,914 DEBUG Processing 245/672 atomic regions from SNP 73372 to 73972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,100 DEBUG Processing 246/672 atomic regions from SNP 73672 to 74272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,298 DEBUG Processing 247/672 atomic regions from SNP 73972 to 74572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,517 DEBUG Processing 248/672 atomic regions from SNP 74272 to 74872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,738 DEBUG Processing 249/672 atomic regions from SNP 74572 to 75172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,962 DEBUG Processing 250/672 atomic regions from SNP 74872 to 75472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,161 DEBUG Processing 251/672 atomic regions from SNP 75172 to 75772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,349 DEBUG Processing 252/672 atomic regions from SNP 75472 to 76072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,536 DEBUG Processing 253/672 atomic regions from SNP 75772 to 76372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,722 DEBUG Processing 254/672 atomic regions from SNP 76072 to 76672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,850 DEBUG Segmenting atomic regions: 2025-01-31 09:53:19,908 DEBUG Processing 255/672 atomic regions from SNP 76372 to 76972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,946 DEBUG Processing 1/729 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,096 DEBUG Processing 256/672 atomic regions from SNP 76672 to 77272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,141 DEBUG Processing 2/729 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,310 DEBUG Processing 257/672 atomic regions from SNP 76972 to 77572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,335 DEBUG Processing 3/729 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,533 DEBUG Processing 258/672 atomic regions from SNP 77272 to 77872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,533 DEBUG Processing 4/729 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,734 DEBUG Processing 5/729 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,760 DEBUG Processing 259/672 atomic regions from SNP 77572 to 78172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,931 DEBUG Processing 6/729 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,986 DEBUG Processing 260/672 atomic regions from SNP 77872 to 78472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,125 DEBUG Processing 7/729 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,210 DEBUG Processing 261/672 atomic regions from SNP 78172 to 78772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,320 DEBUG Processing 8/729 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,434 DEBUG Processing 262/672 atomic regions from SNP 78472 to 79072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,514 DEBUG Processing 9/729 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,653 DEBUG Processing 263/672 atomic regions from SNP 78772 to 79372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,713 DEBUG Processing 10/729 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,857 DEBUG Processing 264/672 atomic regions from SNP 79072 to 79672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,911 DEBUG Processing 11/729 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,075 DEBUG Processing 265/672 atomic regions from SNP 79372 to 79972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,110 DEBUG Processing 12/729 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,302 DEBUG Processing 266/672 atomic regions from SNP 79672 to 80272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,312 DEBUG Processing 13/729 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,511 DEBUG Processing 14/729 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,528 DEBUG Processing 267/672 atomic regions from SNP 79972 to 80572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,707 DEBUG Processing 15/729 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,743 DEBUG Processing 268/672 atomic regions from SNP 80272 to 80872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,904 DEBUG Processing 16/729 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,935 DEBUG Processing 269/672 atomic regions from SNP 80572 to 81172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,102 DEBUG Processing 17/729 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,128 DEBUG Processing 270/672 atomic regions from SNP 80872 to 81472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,298 DEBUG Processing 18/729 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,328 DEBUG Processing 271/672 atomic regions from SNP 81172 to 81772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,493 DEBUG Processing 19/729 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,541 DEBUG Processing 272/672 atomic regions from SNP 81472 to 82072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,688 DEBUG Processing 20/729 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,755 DEBUG Processing 273/672 atomic regions from SNP 81772 to 82372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,881 DEBUG Processing 21/729 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,959 DEBUG Processing 274/672 atomic regions from SNP 82072 to 82672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,074 DEBUG Processing 22/729 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,153 DEBUG Processing 275/672 atomic regions from SNP 82372 to 82972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,268 DEBUG Processing 23/729 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,297 DEBUG Subchromosome time: 197.65816565603018, subchromosome SNPs: 212790 2025-01-31 09:53:24,297 DEBUG Estimated BADs: [1.29, 7.72, 0.64, 5.15, 0.86, 15.45, 0.86, 10.30, 0.86, 10.30, 0.00, 0.64, 7.72, 1.29, 7.72, 0.51, 5.15, 1.29, 10.30, 0.86, 2.57, 15.45, 7.72, 0.64, 5.15, 1.29, 0.43, 2.57, 0.64, 2.57, 0.86, 2.57, 0.64, 2.57, 7.72, 2.57, 0.43, 2.57, 0.64, 2.57, 0.43, 2.57, 5.15, 1.29, 5.15, 2.57, 5.15, 10.30, 2.57, 12.87, 5.15] SNP counts: [795, 2388, 819, 2596, 4003, 345, 3371, 2256, 2303, 2232, 33, 1139, 3392, 1847, 7352, 1998, 3931, 4015, 390, 6335, 2209, 2682, 2771, 2000, 2839, 3487, 5682, 1493, 11840, 9182, 6865, 6015, 3316, 2420, 3345, 7144, 6299, 3311, 2986, 1491, 4808, 4093, 8060, 10581, 3404, 26897, 1630, 4170, 22920, 1344, 7107] SNP IDs counts: [795, 2388, 819, 2596, 4003, 345, 3371, 2256, 2303, 2232, 33, 1139, 3392, 1847, 7352, 1998, 3931, 4015, 390, 6335, 2209, 2682, 2771, 2000, 2839, 3487, 5682, 1493, 11840, 9182, 6865, 6015, 3316, 2420, 3345, 7144, 6299, 3311, 2986, 1491, 4808, 4093, 8060, 10581, 3404, 26897, 1630, 4170, 22920, 1344, 7107] Critical gap: 665816bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.57Mbp, 5.12Mbp, 5.70Mbp, 7.30Mbp, 12.88Mbp, 13.06Mbp, 15.91Mbp, 17.08Mbp, 18.87Mbp, 20.07Mbp[0.70Mbp], 21.34Mbp[1.45Mbp], 24.08Mbp, 25.94Mbp, 27.16Mbp, 31.15Mbp, 33.82Mbp, 35.95Mbp, 38.07Mbp, 38.27Mbp, 43.04Mbp, 44.30Mbp, 45.70Mbp, 47.15Mbp, 48.45Mbp, 49.99Mbp, 52.06Mbp, 55.48Mbp, 56.35Mbp, 63.88Mbp, 68.85Mbp, 72.66Mbp, 76.01Mbp, 77.92Mbp, 79.23Mbp, 80.98Mbp, 84.89Mbp, 88.61Mbp, 90.48Mbp, 92.14Mbp, 92.98Mbp, 95.82Mbp, 98.05Mbp, 102.27Mbp, 109.09Mbp, 110.89Mbp, 125.39Mbp, 126.24Mbp, 128.46Mbp, 140.81Mbp, 141.51Mbp, 145.44Mbp] 2025-01-31 09:53:24,297 DEBUG chr7 time: 197.65882100723684 s 2025-01-31 09:53:24,349 DEBUG Processing 276/672 atomic regions from SNP 82672 to 83272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,425 DEBUG chr7: Fitting background model for 50 segments 2025-01-31 09:53:24,461 DEBUG Processing 24/729 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,558 DEBUG Processing 277/672 atomic regions from SNP 82972 to 83572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,651 DEBUG Processing 25/729 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,769 DEBUG Processing 278/672 atomic regions from SNP 83272 to 83872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,844 DEBUG Processing 26/729 atomic regions from SNP 7525 to 8125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,981 DEBUG Processing 279/672 atomic regions from SNP 83572 to 84172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,042 DEBUG Processing 27/729 atomic regions from SNP 7825 to 8425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,201 DEBUG Processing 280/672 atomic regions from SNP 83872 to 84472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,262 DEBUG Processing 28/729 atomic regions from SNP 8125 to 8725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,410 DEBUG Processing 281/672 atomic regions from SNP 84172 to 84772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,477 DEBUG Processing 29/729 atomic regions from SNP 8425 to 9025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,598 DEBUG Processing 282/672 atomic regions from SNP 84472 to 85072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,673 DEBUG Processing 30/729 atomic regions from SNP 8725 to 9325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,785 DEBUG Processing 283/672 atomic regions from SNP 84772 to 85372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,866 DEBUG Processing 31/729 atomic regions from SNP 9025 to 9625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,971 DEBUG Processing 284/672 atomic regions from SNP 85072 to 85672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,060 DEBUG Processing 32/729 atomic regions from SNP 9325 to 9925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,159 DEBUG Processing 285/672 atomic regions from SNP 85372 to 85972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,253 DEBUG Processing 33/729 atomic regions from SNP 9625 to 10225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,350 DEBUG Processing 286/672 atomic regions from SNP 85672 to 86272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,444 DEBUG Processing 34/729 atomic regions from SNP 9925 to 10525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,538 DEBUG Processing 287/672 atomic regions from SNP 85972 to 86572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,638 DEBUG Processing 35/729 atomic regions from SNP 10225 to 10825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,726 DEBUG Processing 288/672 atomic regions from SNP 86272 to 86872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,830 DEBUG Processing 36/729 atomic regions from SNP 10525 to 11125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,916 DEBUG Processing 289/672 atomic regions from SNP 86572 to 87172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,022 DEBUG Processing 37/729 atomic regions from SNP 10825 to 11425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,105 DEBUG Processing 290/672 atomic regions from SNP 86872 to 87472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,216 DEBUG Processing 38/729 atomic regions from SNP 11125 to 11725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,296 DEBUG Processing 291/672 atomic regions from SNP 87172 to 87772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,410 DEBUG Processing 39/729 atomic regions from SNP 11425 to 12025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,487 DEBUG Processing 292/672 atomic regions from SNP 87472 to 88072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,604 DEBUG Processing 40/729 atomic regions from SNP 11725 to 12325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,677 DEBUG Processing 293/672 atomic regions from SNP 87772 to 88372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,799 DEBUG Processing 41/729 atomic regions from SNP 12025 to 12625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,892 DEBUG Processing 294/672 atomic regions from SNP 88072 to 88672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,992 DEBUG Processing 42/729 atomic regions from SNP 12325 to 12925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,097 DEBUG Processing 295/672 atomic regions from SNP 88372 to 88972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,184 DEBUG Processing 43/729 atomic regions from SNP 12625 to 13225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,289 DEBUG Processing 296/672 atomic regions from SNP 88672 to 89272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,379 DEBUG Processing 44/729 atomic regions from SNP 12925 to 13525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,482 DEBUG Processing 297/672 atomic regions from SNP 88972 to 89572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,569 DEBUG Processing 45/729 atomic regions from SNP 13225 to 13825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,674 DEBUG Processing 298/672 atomic regions from SNP 89272 to 89872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,763 DEBUG Processing 46/729 atomic regions from SNP 13525 to 14125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,864 DEBUG Processing 299/672 atomic regions from SNP 89572 to 90172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,957 DEBUG Processing 47/729 atomic regions from SNP 13825 to 14425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,065 DEBUG Processing 300/672 atomic regions from SNP 89872 to 90472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,150 DEBUG Processing 48/729 atomic regions from SNP 14125 to 14725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,282 DEBUG Processing 301/672 atomic regions from SNP 90172 to 90772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,344 DEBUG Processing 49/729 atomic regions from SNP 14425 to 15025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,504 DEBUG Processing 302/672 atomic regions from SNP 90472 to 91072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,541 DEBUG Processing 50/729 atomic regions from SNP 14725 to 15325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,723 DEBUG Processing 303/672 atomic regions from SNP 90772 to 91372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,738 DEBUG Processing 51/729 atomic regions from SNP 15025 to 15625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,916 DEBUG Processing 304/672 atomic regions from SNP 91072 to 91672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,935 DEBUG Processing 52/729 atomic regions from SNP 15325 to 15925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,108 DEBUG Processing 305/672 atomic regions from SNP 91372 to 91972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,129 DEBUG Processing 53/729 atomic regions from SNP 15625 to 16225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,299 DEBUG Processing 306/672 atomic regions from SNP 91672 to 92272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,326 DEBUG Processing 54/729 atomic regions from SNP 15925 to 16525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,498 DEBUG Processing 307/672 atomic regions from SNP 91972 to 92572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,520 DEBUG Processing 55/729 atomic regions from SNP 16225 to 16825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,693 DEBUG Processing 308/672 atomic regions from SNP 92272 to 92872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,715 DEBUG Processing 56/729 atomic regions from SNP 16525 to 17125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,894 DEBUG Processing 309/672 atomic regions from SNP 92572 to 93172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,906 DEBUG Processing 57/729 atomic regions from SNP 16825 to 17425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,095 DEBUG Processing 58/729 atomic regions from SNP 17125 to 17725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,112 DEBUG Processing 310/672 atomic regions from SNP 92872 to 93472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,292 DEBUG Processing 59/729 atomic regions from SNP 17425 to 18025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,320 DEBUG Processing 311/672 atomic regions from SNP 93172 to 93772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,490 DEBUG Processing 60/729 atomic regions from SNP 17725 to 18325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,542 DEBUG Processing 312/672 atomic regions from SNP 93472 to 94072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,685 DEBUG Processing 61/729 atomic regions from SNP 18025 to 18625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,755 DEBUG Processing 313/672 atomic regions from SNP 93772 to 94372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,880 DEBUG Processing 62/729 atomic regions from SNP 18325 to 18925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,967 DEBUG Processing 314/672 atomic regions from SNP 94072 to 94672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,073 DEBUG Processing 63/729 atomic regions from SNP 18625 to 19225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,164 DEBUG Processing 315/672 atomic regions from SNP 94372 to 94972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,269 DEBUG Processing 64/729 atomic regions from SNP 18925 to 19525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,354 DEBUG Processing 316/672 atomic regions from SNP 94672 to 95272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,475 DEBUG Processing 65/729 atomic regions from SNP 19225 to 19825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,556 DEBUG Processing 317/672 atomic regions from SNP 94972 to 95572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,670 DEBUG Processing 66/729 atomic regions from SNP 19525 to 20125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,761 DEBUG Processing 318/672 atomic regions from SNP 95272 to 95872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,867 DEBUG Processing 67/729 atomic regions from SNP 19825 to 20425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,959 DEBUG Processing 319/672 atomic regions from SNP 95572 to 96172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,062 DEBUG Processing 68/729 atomic regions from SNP 20125 to 20725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,163 DEBUG Processing 320/672 atomic regions from SNP 95872 to 96472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,278 DEBUG Processing 69/729 atomic regions from SNP 20425 to 21025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,371 DEBUG Processing 321/672 atomic regions from SNP 96172 to 96772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,493 DEBUG Processing 70/729 atomic regions from SNP 20725 to 21325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,575 DEBUG Processing 322/672 atomic regions from SNP 96472 to 97072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,701 DEBUG Processing 71/729 atomic regions from SNP 21025 to 21625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,777 DEBUG Processing 323/672 atomic regions from SNP 96772 to 97372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,901 DEBUG Processing 72/729 atomic regions from SNP 21325 to 21925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,989 DEBUG Processing 324/672 atomic regions from SNP 97072 to 97672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,098 DEBUG Processing 73/729 atomic regions from SNP 21625 to 22225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,205 DEBUG Processing 325/672 atomic regions from SNP 97372 to 97972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,297 DEBUG Processing 74/729 atomic regions from SNP 21925 to 22525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,425 DEBUG Processing 326/672 atomic regions from SNP 97672 to 98272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,496 DEBUG Processing 75/729 atomic regions from SNP 22225 to 22825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,637 DEBUG Processing 327/672 atomic regions from SNP 97972 to 98572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,694 DEBUG Processing 76/729 atomic regions from SNP 22525 to 23125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,844 DEBUG Processing 328/672 atomic regions from SNP 98272 to 98872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,892 DEBUG Processing 77/729 atomic regions from SNP 22825 to 23425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,064 DEBUG Processing 329/672 atomic regions from SNP 98572 to 99172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,090 DEBUG Processing 78/729 atomic regions from SNP 23125 to 23725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,272 DEBUG Processing 330/672 atomic regions from SNP 98872 to 99472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,288 DEBUG Processing 79/729 atomic regions from SNP 23425 to 24025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,467 DEBUG Processing 331/672 atomic regions from SNP 99172 to 99772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,487 DEBUG Processing 80/729 atomic regions from SNP 23725 to 24325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,660 DEBUG Processing 332/672 atomic regions from SNP 99472 to 100072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,685 DEBUG Processing 81/729 atomic regions from SNP 24025 to 24625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,852 DEBUG Processing 333/672 atomic regions from SNP 99772 to 100372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,885 DEBUG Processing 82/729 atomic regions from SNP 24325 to 24925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,045 DEBUG Processing 334/672 atomic regions from SNP 100072 to 100672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,089 DEBUG Processing 83/729 atomic regions from SNP 24625 to 25225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,239 DEBUG Processing 335/672 atomic regions from SNP 100372 to 100972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,290 DEBUG Processing 84/729 atomic regions from SNP 24925 to 25525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,449 DEBUG Processing 336/672 atomic regions from SNP 100672 to 101272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,489 DEBUG Processing 85/729 atomic regions from SNP 25225 to 25825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,662 DEBUG Processing 337/672 atomic regions from SNP 100972 to 101572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,688 DEBUG Processing 86/729 atomic regions from SNP 25525 to 26125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,862 DEBUG Processing 338/672 atomic regions from SNP 101272 to 101872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,884 DEBUG Processing 87/729 atomic regions from SNP 25825 to 26425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,056 DEBUG Processing 339/672 atomic regions from SNP 101572 to 102172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,080 DEBUG Processing 88/729 atomic regions from SNP 26125 to 26725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,249 DEBUG Processing 340/672 atomic regions from SNP 101872 to 102472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,280 DEBUG Processing 89/729 atomic regions from SNP 26425 to 27025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,474 DEBUG Processing 341/672 atomic regions from SNP 102172 to 102772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,481 DEBUG Processing 90/729 atomic regions from SNP 26725 to 27325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,678 DEBUG Processing 342/672 atomic regions from SNP 102472 to 103072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,685 DEBUG Processing 91/729 atomic regions from SNP 27025 to 27625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,873 DEBUG Processing 343/672 atomic regions from SNP 102772 to 103372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,888 DEBUG Processing 92/729 atomic regions from SNP 27325 to 27925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,069 DEBUG Processing 344/672 atomic regions from SNP 103072 to 103672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,089 DEBUG Processing 93/729 atomic regions from SNP 27625 to 28225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,266 DEBUG Processing 345/672 atomic regions from SNP 103372 to 103972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,291 DEBUG Processing 94/729 atomic regions from SNP 27925 to 28525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,462 DEBUG Processing 346/672 atomic regions from SNP 103672 to 104272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,492 DEBUG Processing 95/729 atomic regions from SNP 28225 to 28825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,658 DEBUG Processing 347/672 atomic regions from SNP 103972 to 104572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,693 DEBUG Processing 96/729 atomic regions from SNP 28525 to 29125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,860 DEBUG Processing 348/672 atomic regions from SNP 104272 to 104872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,896 DEBUG Processing 97/729 atomic regions from SNP 28825 to 29425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,057 DEBUG Processing 349/672 atomic regions from SNP 104572 to 105172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,098 DEBUG Processing 98/729 atomic regions from SNP 29125 to 29725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,266 DEBUG Processing 350/672 atomic regions from SNP 104872 to 105472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,294 DEBUG Processing 99/729 atomic regions from SNP 29425 to 30025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,487 DEBUG Processing 351/672 atomic regions from SNP 105172 to 105772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,495 DEBUG Processing 100/729 atomic regions from SNP 29725 to 30325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,689 DEBUG Processing 352/672 atomic regions from SNP 105472 to 106072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,720 DEBUG Processing 101/729 atomic regions from SNP 30025 to 30625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,905 DEBUG Processing 353/672 atomic regions from SNP 105772 to 106372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,945 DEBUG Processing 102/729 atomic regions from SNP 30325 to 30925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,117 DEBUG Processing 354/672 atomic regions from SNP 106072 to 106672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,182 DEBUG Processing 103/729 atomic regions from SNP 30625 to 31225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,337 DEBUG Processing 355/672 atomic regions from SNP 106372 to 106972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,417 DEBUG Processing 104/729 atomic regions from SNP 30925 to 31525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,566 DEBUG Processing 356/672 atomic regions from SNP 106672 to 107272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,652 DEBUG Processing 105/729 atomic regions from SNP 31225 to 31825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,792 DEBUG Processing 357/672 atomic regions from SNP 106972 to 107572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,887 DEBUG Processing 106/729 atomic regions from SNP 31525 to 32125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,001 DEBUG Processing 358/672 atomic regions from SNP 107272 to 107872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,118 DEBUG Processing 107/729 atomic regions from SNP 31825 to 32425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,196 DEBUG Processing 359/672 atomic regions from SNP 107572 to 108172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,342 DEBUG Processing 108/729 atomic regions from SNP 32125 to 32725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,391 DEBUG Processing 360/672 atomic regions from SNP 107872 to 108472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,571 DEBUG Processing 109/729 atomic regions from SNP 32425 to 33025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,586 DEBUG Processing 361/672 atomic regions from SNP 108172 to 108772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,782 DEBUG Processing 362/672 atomic regions from SNP 108472 to 109072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,804 DEBUG Processing 110/729 atomic regions from SNP 32725 to 33325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,974 DEBUG Processing 363/672 atomic regions from SNP 108772 to 109372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,023 DEBUG Processing 111/729 atomic regions from SNP 33025 to 33625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,163 DEBUG Processing 364/672 atomic regions from SNP 109072 to 109672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,244 DEBUG Processing 112/729 atomic regions from SNP 33325 to 33925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,352 DEBUG Processing 365/672 atomic regions from SNP 109372 to 109972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,452 DEBUG Processing 113/729 atomic regions from SNP 33625 to 34225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,543 DEBUG Processing 366/672 atomic regions from SNP 109672 to 110272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,647 DEBUG Processing 114/729 atomic regions from SNP 33925 to 34525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,732 DEBUG Processing 367/672 atomic regions from SNP 109972 to 110572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,842 DEBUG Processing 115/729 atomic regions from SNP 34225 to 34825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,922 DEBUG Processing 368/672 atomic regions from SNP 110272 to 110872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,036 DEBUG Processing 116/729 atomic regions from SNP 34525 to 35125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,108 DEBUG Processing 369/672 atomic regions from SNP 110572 to 111172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,230 DEBUG Processing 117/729 atomic regions from SNP 34825 to 35425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,295 DEBUG Processing 370/672 atomic regions from SNP 110872 to 111472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,430 DEBUG Processing 118/729 atomic regions from SNP 35125 to 35725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,484 DEBUG Processing 371/672 atomic regions from SNP 111172 to 111772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,625 DEBUG Processing 119/729 atomic regions from SNP 35425 to 36025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,694 DEBUG Processing 372/672 atomic regions from SNP 111472 to 112072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,820 DEBUG Processing 120/729 atomic regions from SNP 35725 to 36325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,915 DEBUG Processing 373/672 atomic regions from SNP 111772 to 112372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,011 DEBUG Processing 121/729 atomic regions from SNP 36025 to 36625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,127 DEBUG Processing 374/672 atomic regions from SNP 112072 to 112672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,203 DEBUG Processing 122/729 atomic regions from SNP 36325 to 36925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,316 DEBUG Processing 375/672 atomic regions from SNP 112372 to 112972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,396 DEBUG Processing 123/729 atomic regions from SNP 36625 to 37225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,507 DEBUG Processing 376/672 atomic regions from SNP 112672 to 113272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,588 DEBUG Processing 124/729 atomic regions from SNP 36925 to 37525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,697 DEBUG Processing 377/672 atomic regions from SNP 112972 to 113572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,780 DEBUG Processing 125/729 atomic regions from SNP 37225 to 37825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,887 DEBUG Processing 378/672 atomic regions from SNP 113272 to 113872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,976 DEBUG Processing 126/729 atomic regions from SNP 37525 to 38125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,075 DEBUG Processing 379/672 atomic regions from SNP 113572 to 114172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,168 DEBUG Processing 127/729 atomic regions from SNP 37825 to 38425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,269 DEBUG Processing 380/672 atomic regions from SNP 113872 to 114472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,366 DEBUG Processing 128/729 atomic regions from SNP 38125 to 38725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,471 DEBUG Processing 381/672 atomic regions from SNP 114172 to 114772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,565 DEBUG Processing 129/729 atomic regions from SNP 38425 to 39025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,670 DEBUG Processing 382/672 atomic regions from SNP 114472 to 115072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,757 DEBUG Processing 130/729 atomic regions from SNP 38725 to 39325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,875 DEBUG Processing 383/672 atomic regions from SNP 114772 to 115372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,951 DEBUG Processing 131/729 atomic regions from SNP 39025 to 39625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,079 DEBUG Processing 384/672 atomic regions from SNP 115072 to 115672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,145 DEBUG Processing 132/729 atomic regions from SNP 39325 to 39925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,272 DEBUG Processing 385/672 atomic regions from SNP 115372 to 115972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,339 DEBUG Processing 133/729 atomic regions from SNP 39625 to 40225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,468 DEBUG Processing 386/672 atomic regions from SNP 115672 to 116272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,534 DEBUG Processing 134/729 atomic regions from SNP 39925 to 40525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,685 DEBUG Processing 387/672 atomic regions from SNP 115972 to 116572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,731 DEBUG Processing 135/729 atomic regions from SNP 40225 to 40825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,908 DEBUG Processing 388/672 atomic regions from SNP 116272 to 116872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,931 DEBUG Processing 136/729 atomic regions from SNP 40525 to 41125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,128 DEBUG Processing 389/672 atomic regions from SNP 116572 to 117172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,132 DEBUG Processing 137/729 atomic regions from SNP 40825 to 41425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,333 DEBUG Processing 138/729 atomic regions from SNP 41125 to 41725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,351 DEBUG Processing 390/672 atomic regions from SNP 116872 to 117472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,531 DEBUG Processing 139/729 atomic regions from SNP 41425 to 42025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,562 DEBUG Processing 391/672 atomic regions from SNP 117172 to 117772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,727 DEBUG Processing 140/729 atomic regions from SNP 41725 to 42325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,782 DEBUG Processing 392/672 atomic regions from SNP 117472 to 118072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,896 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:53:47,897 DEBUG chr11: Signal quantile: 0.984. signal threshold: 21. Best RMSEA: 0.009 2025-01-31 09:53:47,921 DEBUG Processing 141/729 atomic regions from SNP 42025 to 42625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,978 DEBUG Processing 393/672 atomic regions from SNP 117772 to 118372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,118 DEBUG Processing 142/729 atomic regions from SNP 42325 to 42925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,167 DEBUG Processing 394/672 atomic regions from SNP 118072 to 118672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,317 DEBUG Processing 143/729 atomic regions from SNP 42625 to 43225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,361 DEBUG Processing 395/672 atomic regions from SNP 118372 to 118972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,515 DEBUG Processing 144/729 atomic regions from SNP 42925 to 43525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,554 DEBUG Processing 396/672 atomic regions from SNP 118672 to 119272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,714 DEBUG Processing 145/729 atomic regions from SNP 43225 to 43825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,748 DEBUG Processing 397/672 atomic regions from SNP 118972 to 119572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,913 DEBUG Processing 146/729 atomic regions from SNP 43525 to 44125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,946 DEBUG Processing 398/672 atomic regions from SNP 119272 to 119872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,113 DEBUG Processing 147/729 atomic regions from SNP 43825 to 44425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,145 DEBUG Processing 399/672 atomic regions from SNP 119572 to 120172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,316 DEBUG Processing 148/729 atomic regions from SNP 44125 to 44725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,344 DEBUG Processing 400/672 atomic regions from SNP 119872 to 120472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,514 DEBUG Processing 149/729 atomic regions from SNP 44425 to 45025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,537 DEBUG Processing 401/672 atomic regions from SNP 120172 to 120772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,711 DEBUG Processing 150/729 atomic regions from SNP 44725 to 45325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,731 DEBUG Processing 402/672 atomic regions from SNP 120472 to 121072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,891 DEBUG chr11 total SNP count: 214080 2025-01-31 09:53:49,892 DEBUG chr11 length: 122082543 2025-01-31 09:53:49,892 DEBUG ----------------------------------------- 2025-01-31 09:53:49,892 INFO Processing SNPs in chr11 2025-01-31 09:53:49,911 DEBUG Processing 151/729 atomic regions from SNP 45025 to 45625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,928 DEBUG Processing 403/672 atomic regions from SNP 120772 to 121372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,103 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 214080)] 2025-01-31 09:53:50,107 DEBUG Processing 152/729 atomic regions from SNP 45325 to 45925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,118 DEBUG Processing 404/672 atomic regions from SNP 121072 to 121672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,245 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:50,303 DEBUG Processing 153/729 atomic regions from SNP 45625 to 46225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,316 DEBUG Processing 405/672 atomic regions from SNP 121372 to 121972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,496 DEBUG Processing 154/729 atomic regions from SNP 45925 to 46525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,518 DEBUG Processing 406/672 atomic regions from SNP 121672 to 122272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,688 DEBUG Processing 155/729 atomic regions from SNP 46225 to 46825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,718 DEBUG Processing 407/672 atomic regions from SNP 121972 to 122572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,881 DEBUG Processing 156/729 atomic regions from SNP 46525 to 47125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,914 DEBUG Processing 408/672 atomic regions from SNP 122272 to 122872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,072 DEBUG Processing 157/729 atomic regions from SNP 46825 to 47425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,123 DEBUG Processing 409/672 atomic regions from SNP 122572 to 123172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,267 DEBUG Processing 158/729 atomic regions from SNP 47125 to 47725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,351 DEBUG Processing 410/672 atomic regions from SNP 122872 to 123472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,459 DEBUG Processing 159/729 atomic regions from SNP 47425 to 48025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,575 DEBUG Processing 411/672 atomic regions from SNP 123172 to 123772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,652 DEBUG Processing 160/729 atomic regions from SNP 47725 to 48325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,769 DEBUG Processing 412/672 atomic regions from SNP 123472 to 124072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,847 DEBUG Processing 161/729 atomic regions from SNP 48025 to 48625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,960 DEBUG Processing 413/672 atomic regions from SNP 123772 to 124372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,041 DEBUG Processing 162/729 atomic regions from SNP 48325 to 48925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,152 DEBUG Processing 414/672 atomic regions from SNP 124072 to 124672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,234 DEBUG Processing 163/729 atomic regions from SNP 48625 to 49225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,348 DEBUG Processing 415/672 atomic regions from SNP 124372 to 124972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,449 DEBUG Processing 164/729 atomic regions from SNP 48925 to 49525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,542 DEBUG Processing 416/672 atomic regions from SNP 124672 to 125272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,668 DEBUG Processing 165/729 atomic regions from SNP 49225 to 49825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,736 DEBUG Processing 417/672 atomic regions from SNP 124972 to 125572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,886 DEBUG Processing 166/729 atomic regions from SNP 49525 to 50125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,928 DEBUG Processing 418/672 atomic regions from SNP 125272 to 125872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,081 DEBUG Processing 167/729 atomic regions from SNP 49825 to 50425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,123 DEBUG Processing 419/672 atomic regions from SNP 125572 to 126172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,279 DEBUG Processing 168/729 atomic regions from SNP 50125 to 50725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,318 DEBUG Processing 420/672 atomic regions from SNP 125872 to 126472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,477 DEBUG Processing 169/729 atomic regions from SNP 50425 to 51025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,513 DEBUG Processing 421/672 atomic regions from SNP 126172 to 126772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,673 DEBUG Processing 170/729 atomic regions from SNP 50725 to 51325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,705 DEBUG Processing 422/672 atomic regions from SNP 126472 to 127072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,868 DEBUG Processing 171/729 atomic regions from SNP 51025 to 51625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,893 DEBUG Processing 423/672 atomic regions from SNP 126772 to 127372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,061 DEBUG Processing 172/729 atomic regions from SNP 51325 to 51925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,080 DEBUG Processing 424/672 atomic regions from SNP 127072 to 127672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,254 DEBUG Processing 173/729 atomic regions from SNP 51625 to 52225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,269 DEBUG Processing 425/672 atomic regions from SNP 127372 to 127972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,449 DEBUG Processing 174/729 atomic regions from SNP 51925 to 52525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,459 DEBUG Processing 426/672 atomic regions from SNP 127672 to 128272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,642 DEBUG Processing 175/729 atomic regions from SNP 52225 to 52825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,648 DEBUG Processing 427/672 atomic regions from SNP 127972 to 128572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,835 DEBUG Processing 428/672 atomic regions from SNP 128272 to 128872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,836 DEBUG Processing 176/729 atomic regions from SNP 52525 to 53125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,027 DEBUG Processing 429/672 atomic regions from SNP 128572 to 129172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,031 DEBUG Processing 177/729 atomic regions from SNP 52825 to 53425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,224 DEBUG Processing 430/672 atomic regions from SNP 128872 to 129472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,233 DEBUG Processing 178/729 atomic regions from SNP 53125 to 53725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,418 DEBUG Processing 431/672 atomic regions from SNP 129172 to 129772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,434 DEBUG Processing 179/729 atomic regions from SNP 53425 to 54025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,621 DEBUG Processing 432/672 atomic regions from SNP 129472 to 130072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,637 DEBUG Processing 180/729 atomic regions from SNP 53725 to 54325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,816 DEBUG Processing 433/672 atomic regions from SNP 129772 to 130372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,835 DEBUG Processing 181/729 atomic regions from SNP 54025 to 54625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,007 DEBUG Processing 434/672 atomic regions from SNP 130072 to 130672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,030 DEBUG Processing 182/729 atomic regions from SNP 54325 to 54925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,198 DEBUG Processing 435/672 atomic regions from SNP 130372 to 130972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,226 DEBUG Processing 183/729 atomic regions from SNP 54625 to 55225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,391 DEBUG Processing 436/672 atomic regions from SNP 130672 to 131272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,419 DEBUG Processing 184/729 atomic regions from SNP 54925 to 55525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,578 DEBUG Processing 437/672 atomic regions from SNP 130972 to 131572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,612 DEBUG Processing 185/729 atomic regions from SNP 55225 to 55825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,768 DEBUG Processing 438/672 atomic regions from SNP 131272 to 131872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,809 DEBUG Processing 186/729 atomic regions from SNP 55525 to 56125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,958 DEBUG Processing 439/672 atomic regions from SNP 131572 to 132172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,006 DEBUG Processing 187/729 atomic regions from SNP 55825 to 56425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,147 DEBUG Processing 440/672 atomic regions from SNP 131872 to 132472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,203 DEBUG Processing 188/729 atomic regions from SNP 56125 to 56725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,337 DEBUG Processing 441/672 atomic regions from SNP 132172 to 132772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,421 DEBUG Processing 189/729 atomic regions from SNP 56425 to 57025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,528 DEBUG Processing 442/672 atomic regions from SNP 132472 to 133072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,629 DEBUG Processing 190/729 atomic regions from SNP 56725 to 57325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,716 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:53:57,716 DEBUG Processing 443/672 atomic regions from SNP 132772 to 133372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,825 DEBUG Processing 191/729 atomic regions from SNP 57025 to 57625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,907 DEBUG Processing 444/672 atomic regions from SNP 133072 to 133672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,023 DEBUG Processing 192/729 atomic regions from SNP 57325 to 57925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,097 DEBUG Processing 445/672 atomic regions from SNP 133372 to 133972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,220 DEBUG Processing 193/729 atomic regions from SNP 57625 to 58225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,286 DEBUG Processing 446/672 atomic regions from SNP 133672 to 134272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,420 DEBUG Processing 194/729 atomic regions from SNP 57925 to 58525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,479 DEBUG Processing 447/672 atomic regions from SNP 133972 to 134572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,617 DEBUG Processing 195/729 atomic regions from SNP 58225 to 58825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,672 DEBUG Processing 448/672 atomic regions from SNP 134272 to 134872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,818 DEBUG Processing 196/729 atomic regions from SNP 58525 to 59125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,866 DEBUG Processing 449/672 atomic regions from SNP 134572 to 135172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,014 DEBUG Processing 197/729 atomic regions from SNP 58825 to 59425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,059 DEBUG Processing 450/672 atomic regions from SNP 134872 to 135472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,211 DEBUG Processing 198/729 atomic regions from SNP 59125 to 59725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,255 DEBUG Processing 451/672 atomic regions from SNP 135172 to 135772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,410 DEBUG Processing 199/729 atomic regions from SNP 59425 to 60025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,455 DEBUG Processing 452/672 atomic regions from SNP 135472 to 136072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,608 DEBUG Processing 200/729 atomic regions from SNP 59725 to 60325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,651 DEBUG Processing 453/672 atomic regions from SNP 135772 to 136372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,801 DEBUG Processing 201/729 atomic regions from SNP 60025 to 60625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,844 DEBUG Processing 454/672 atomic regions from SNP 136072 to 136672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,997 DEBUG Processing 202/729 atomic regions from SNP 60325 to 60925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,039 DEBUG Processing 455/672 atomic regions from SNP 136372 to 136972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,210 DEBUG Processing 203/729 atomic regions from SNP 60625 to 61225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,248 DEBUG Processing 456/672 atomic regions from SNP 136672 to 137272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,409 DEBUG Processing 204/729 atomic regions from SNP 60925 to 61525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,442 DEBUG Processing 457/672 atomic regions from SNP 136972 to 137572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,606 DEBUG Processing 205/729 atomic regions from SNP 61225 to 61825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,636 DEBUG Processing 458/672 atomic regions from SNP 137272 to 137872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,804 DEBUG Processing 206/729 atomic regions from SNP 61525 to 62125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,829 DEBUG Processing 459/672 atomic regions from SNP 137572 to 138172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,004 DEBUG Processing 207/729 atomic regions from SNP 61825 to 62425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,021 DEBUG Processing 460/672 atomic regions from SNP 137872 to 138472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,206 DEBUG Processing 208/729 atomic regions from SNP 62125 to 62725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,213 DEBUG Processing 461/672 atomic regions from SNP 138172 to 138772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,407 DEBUG Processing 462/672 atomic regions from SNP 138472 to 139072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,408 DEBUG Processing 209/729 atomic regions from SNP 62425 to 63025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,605 DEBUG Processing 463/672 atomic regions from SNP 138772 to 139372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,613 DEBUG Processing 210/729 atomic regions from SNP 62725 to 63325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,800 DEBUG Processing 464/672 atomic regions from SNP 139072 to 139672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,813 DEBUG Processing 211/729 atomic regions from SNP 63025 to 63625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,995 DEBUG Processing 465/672 atomic regions from SNP 139372 to 139972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,014 DEBUG Processing 212/729 atomic regions from SNP 63325 to 63925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,192 DEBUG Processing 466/672 atomic regions from SNP 139672 to 140272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,219 DEBUG Processing 213/729 atomic regions from SNP 63625 to 64225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,388 DEBUG Processing 467/672 atomic regions from SNP 139972 to 140572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,421 DEBUG Processing 214/729 atomic regions from SNP 63925 to 64525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,586 DEBUG Processing 468/672 atomic regions from SNP 140272 to 140872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,623 DEBUG Processing 215/729 atomic regions from SNP 64225 to 64825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,783 DEBUG Processing 469/672 atomic regions from SNP 140572 to 141172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,823 DEBUG Processing 216/729 atomic regions from SNP 64525 to 65125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,978 DEBUG Processing 470/672 atomic regions from SNP 140872 to 141472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,021 DEBUG Processing 217/729 atomic regions from SNP 64825 to 65425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,174 DEBUG Processing 471/672 atomic regions from SNP 141172 to 141772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,217 DEBUG Processing 218/729 atomic regions from SNP 65125 to 65725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,370 DEBUG Processing 472/672 atomic regions from SNP 141472 to 142072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,414 DEBUG Processing 219/729 atomic regions from SNP 65425 to 66025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,564 DEBUG Processing 473/672 atomic regions from SNP 141772 to 142372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,609 DEBUG Processing 220/729 atomic regions from SNP 65725 to 66325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,757 DEBUG Processing 474/672 atomic regions from SNP 142072 to 142672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,809 DEBUG Processing 221/729 atomic regions from SNP 66025 to 66625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,951 DEBUG Processing 475/672 atomic regions from SNP 142372 to 142972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,036 DEBUG Processing 222/729 atomic regions from SNP 66325 to 66925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,145 DEBUG Processing 476/672 atomic regions from SNP 142672 to 143272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,242 DEBUG Processing 223/729 atomic regions from SNP 66625 to 67225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,338 DEBUG Processing 477/672 atomic regions from SNP 142972 to 143572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,454 DEBUG Processing 224/729 atomic regions from SNP 66925 to 67525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,532 DEBUG Processing 478/672 atomic regions from SNP 143272 to 143872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,647 DEBUG Processing 225/729 atomic regions from SNP 67225 to 67825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,726 DEBUG Processing 479/672 atomic regions from SNP 143572 to 144172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,844 DEBUG Processing 226/729 atomic regions from SNP 67525 to 68125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,922 DEBUG Processing 480/672 atomic regions from SNP 143872 to 144472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,039 DEBUG Processing 227/729 atomic regions from SNP 67825 to 68425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,113 DEBUG Processing 481/672 atomic regions from SNP 144172 to 144772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,232 DEBUG Processing 228/729 atomic regions from SNP 68125 to 68725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,307 DEBUG Processing 482/672 atomic regions from SNP 144472 to 145072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,429 DEBUG Processing 229/729 atomic regions from SNP 68425 to 69025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,499 DEBUG Processing 483/672 atomic regions from SNP 144772 to 145372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,623 DEBUG Processing 230/729 atomic regions from SNP 68725 to 69325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,691 DEBUG Processing 484/672 atomic regions from SNP 145072 to 145672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,819 DEBUG Processing 231/729 atomic regions from SNP 69025 to 69625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,884 DEBUG Processing 485/672 atomic regions from SNP 145372 to 145972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,019 DEBUG Processing 232/729 atomic regions from SNP 69325 to 69925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,077 DEBUG Processing 486/672 atomic regions from SNP 145672 to 146272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,220 DEBUG Processing 233/729 atomic regions from SNP 69625 to 70225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,268 DEBUG Processing 487/672 atomic regions from SNP 145972 to 146572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,418 DEBUG Processing 234/729 atomic regions from SNP 69925 to 70525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,465 DEBUG Processing 488/672 atomic regions from SNP 146272 to 146872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,624 DEBUG Processing 235/729 atomic regions from SNP 70225 to 70825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,659 DEBUG Processing 489/672 atomic regions from SNP 146572 to 147172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,843 DEBUG Processing 236/729 atomic regions from SNP 70525 to 71125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,857 DEBUG Processing 490/672 atomic regions from SNP 146872 to 147472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,053 DEBUG Processing 491/672 atomic regions from SNP 147172 to 147772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,067 DEBUG Processing 237/729 atomic regions from SNP 70825 to 71425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,246 DEBUG Processing 492/672 atomic regions from SNP 147472 to 148072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,299 DEBUG Processing 238/729 atomic regions from SNP 71125 to 71725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,440 DEBUG Processing 493/672 atomic regions from SNP 147772 to 148372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,502 DEBUG Processing 239/729 atomic regions from SNP 71425 to 72025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,634 DEBUG Processing 494/672 atomic regions from SNP 148072 to 148672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,712 DEBUG Processing 240/729 atomic regions from SNP 71725 to 72325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,833 DEBUG Processing 495/672 atomic regions from SNP 148372 to 148972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,926 DEBUG Processing 241/729 atomic regions from SNP 72025 to 72625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,022 DEBUG Processing 496/672 atomic regions from SNP 148672 to 149272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,136 DEBUG Processing 242/729 atomic regions from SNP 72325 to 72925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,211 DEBUG Processing 497/672 atomic regions from SNP 148972 to 149572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,365 DEBUG Processing 243/729 atomic regions from SNP 72625 to 73225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,407 DEBUG Processing 498/672 atomic regions from SNP 149272 to 149872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,595 DEBUG Processing 244/729 atomic regions from SNP 72925 to 73525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,603 DEBUG Processing 499/672 atomic regions from SNP 149572 to 150172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,799 DEBUG Processing 500/672 atomic regions from SNP 149872 to 150472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,829 DEBUG Processing 245/729 atomic regions from SNP 73225 to 73825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,995 DEBUG Processing 501/672 atomic regions from SNP 150172 to 150772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,062 DEBUG Processing 246/729 atomic regions from SNP 73525 to 74125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,189 DEBUG Processing 502/672 atomic regions from SNP 150472 to 151072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,290 DEBUG Processing 247/729 atomic regions from SNP 73825 to 74425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,380 DEBUG Processing 503/672 atomic regions from SNP 150772 to 151372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,511 DEBUG Processing 248/729 atomic regions from SNP 74125 to 74725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,569 DEBUG Processing 504/672 atomic regions from SNP 151072 to 151672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,707 DEBUG Processing 249/729 atomic regions from SNP 74425 to 75025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,758 DEBUG Processing 505/672 atomic regions from SNP 151372 to 151972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,905 DEBUG Processing 250/729 atomic regions from SNP 74725 to 75325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,948 DEBUG Processing 506/672 atomic regions from SNP 151672 to 152272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,114 DEBUG Processing 251/729 atomic regions from SNP 75025 to 75625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,139 DEBUG Processing 507/672 atomic regions from SNP 151972 to 152572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,320 DEBUG Processing 252/729 atomic regions from SNP 75325 to 75925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,332 DEBUG Processing 508/672 atomic regions from SNP 152272 to 152872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,525 DEBUG Processing 509/672 atomic regions from SNP 152572 to 153172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,531 DEBUG Processing 253/729 atomic regions from SNP 75625 to 76225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,718 DEBUG Processing 510/672 atomic regions from SNP 152872 to 153472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,753 DEBUG Processing 254/729 atomic regions from SNP 75925 to 76525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,912 DEBUG Processing 511/672 atomic regions from SNP 153172 to 153772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,980 DEBUG Processing 255/729 atomic regions from SNP 76225 to 76825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,104 DEBUG Processing 512/672 atomic regions from SNP 153472 to 154072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,194 DEBUG Processing 256/729 atomic regions from SNP 76525 to 77125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,295 DEBUG Processing 513/672 atomic regions from SNP 153772 to 154372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,412 DEBUG Processing 257/729 atomic regions from SNP 76825 to 77425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,486 DEBUG Processing 514/672 atomic regions from SNP 154072 to 154672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,611 DEBUG Processing 258/729 atomic regions from SNP 77125 to 77725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,678 DEBUG Processing 515/672 atomic regions from SNP 154372 to 154972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,810 DEBUG Processing 259/729 atomic regions from SNP 77425 to 78025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,868 DEBUG Processing 516/672 atomic regions from SNP 154672 to 155272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,011 DEBUG Processing 260/729 atomic regions from SNP 77725 to 78325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,061 DEBUG Processing 517/672 atomic regions from SNP 154972 to 155572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,211 DEBUG Processing 261/729 atomic regions from SNP 78025 to 78625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,252 DEBUG Processing 518/672 atomic regions from SNP 155272 to 155872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,410 DEBUG Processing 262/729 atomic regions from SNP 78325 to 78925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,443 DEBUG Processing 519/672 atomic regions from SNP 155572 to 156172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,609 DEBUG Processing 263/729 atomic regions from SNP 78625 to 79225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,633 DEBUG Processing 520/672 atomic regions from SNP 155872 to 156472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,806 DEBUG Processing 264/729 atomic regions from SNP 78925 to 79525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,824 DEBUG Processing 521/672 atomic regions from SNP 156172 to 156772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,005 DEBUG Processing 265/729 atomic regions from SNP 79225 to 79825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,017 DEBUG Processing 522/672 atomic regions from SNP 156472 to 157072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,203 DEBUG Processing 266/729 atomic regions from SNP 79525 to 80125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,224 DEBUG Processing 523/672 atomic regions from SNP 156772 to 157372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,404 DEBUG Processing 267/729 atomic regions from SNP 79825 to 80425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,426 DEBUG Processing 524/672 atomic regions from SNP 157072 to 157672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,602 DEBUG Processing 268/729 atomic regions from SNP 80125 to 80725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,618 DEBUG Processing 525/672 atomic regions from SNP 157372 to 157972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,801 DEBUG Processing 269/729 atomic regions from SNP 80425 to 81025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,810 DEBUG Processing 526/672 atomic regions from SNP 157672 to 158272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,004 DEBUG Processing 527/672 atomic regions from SNP 157972 to 158572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,010 DEBUG Processing 270/729 atomic regions from SNP 80725 to 81325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,196 DEBUG Processing 528/672 atomic regions from SNP 158272 to 158872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,231 DEBUG Processing 271/729 atomic regions from SNP 81025 to 81625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,387 DEBUG Processing 529/672 atomic regions from SNP 158572 to 159172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,433 DEBUG Processing 272/729 atomic regions from SNP 81325 to 81925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,581 DEBUG Processing 530/672 atomic regions from SNP 158872 to 159472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,634 DEBUG Processing 273/729 atomic regions from SNP 81625 to 82225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,774 DEBUG Processing 531/672 atomic regions from SNP 159172 to 159772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,842 DEBUG Processing 274/729 atomic regions from SNP 81925 to 82525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,968 DEBUG Processing 532/672 atomic regions from SNP 159472 to 160072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,038 DEBUG Processing 275/729 atomic regions from SNP 82225 to 82825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,160 DEBUG Processing 533/672 atomic regions from SNP 159772 to 160372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,238 DEBUG Processing 276/729 atomic regions from SNP 82525 to 83125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,357 DEBUG Processing 534/672 atomic regions from SNP 160072 to 160672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,466 DEBUG Processing 277/729 atomic regions from SNP 82825 to 83425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,512 DEBUG Segmenting atomic regions: 2025-01-31 09:54:15,552 DEBUG Processing 535/672 atomic regions from SNP 160372 to 160972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,607 DEBUG Processing 1/712 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,674 DEBUG Processing 278/729 atomic regions from SNP 83125 to 83725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,742 DEBUG Processing 536/672 atomic regions from SNP 160672 to 161272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,829 DEBUG Processing 2/712 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,872 DEBUG Processing 279/729 atomic regions from SNP 83425 to 84025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,933 DEBUG Processing 537/672 atomic regions from SNP 160972 to 161572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,050 DEBUG Processing 3/712 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,075 DEBUG Processing 280/729 atomic regions from SNP 83725 to 84325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,125 DEBUG Processing 538/672 atomic regions from SNP 161272 to 161872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,216 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:54:16,217 DEBUG chr13: Signal quantile: 0.990. signal threshold: 21. Best RMSEA: 0.012 2025-01-31 09:54:16,261 DEBUG Processing 4/712 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,275 DEBUG Processing 281/729 atomic regions from SNP 84025 to 84625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,342 DEBUG Processing 539/672 atomic regions from SNP 161572 to 162172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,471 DEBUG Processing 5/712 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,475 DEBUG Processing 282/729 atomic regions from SNP 84325 to 84925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,534 DEBUG Processing 540/672 atomic regions from SNP 161872 to 162472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,682 DEBUG Processing 283/729 atomic regions from SNP 84625 to 85225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,695 DEBUG Processing 6/712 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,728 DEBUG Processing 541/672 atomic regions from SNP 162172 to 162772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,905 DEBUG Processing 284/729 atomic regions from SNP 84925 to 85525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,918 DEBUG Processing 7/712 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,921 DEBUG Processing 542/672 atomic regions from SNP 162472 to 163072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,118 DEBUG Processing 543/672 atomic regions from SNP 162772 to 163372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,134 DEBUG Processing 285/729 atomic regions from SNP 85225 to 85825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,140 DEBUG Processing 8/712 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,313 DEBUG Processing 544/672 atomic regions from SNP 163072 to 163672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,344 DEBUG Processing 9/712 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,356 DEBUG Processing 286/729 atomic regions from SNP 85525 to 86125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,508 DEBUG Processing 545/672 atomic regions from SNP 163372 to 163972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,550 DEBUG Processing 10/712 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,563 DEBUG Processing 287/729 atomic regions from SNP 85825 to 86425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,701 DEBUG Processing 546/672 atomic regions from SNP 163672 to 164272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,759 DEBUG Processing 288/729 atomic regions from SNP 86125 to 86725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,765 DEBUG Processing 11/712 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,916 DEBUG Processing 547/672 atomic regions from SNP 163972 to 164572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,955 DEBUG Processing 289/729 atomic regions from SNP 86425 to 87025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,986 DEBUG Processing 12/712 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,121 DEBUG Processing 548/672 atomic regions from SNP 164272 to 164872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,151 DEBUG Processing 290/729 atomic regions from SNP 86725 to 87325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,185 DEBUG chr13 total SNP count: 204860 2025-01-31 09:54:18,185 DEBUG chr13 length: 120421639 2025-01-31 09:54:18,185 DEBUG ----------------------------------------- 2025-01-31 09:54:18,185 INFO Processing SNPs in chr13 2025-01-31 09:54:18,217 DEBUG Processing 13/712 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,316 DEBUG Processing 549/672 atomic regions from SNP 164572 to 165172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,350 DEBUG Processing 291/729 atomic regions from SNP 87025 to 87625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,388 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 204860)] 2025-01-31 09:54:18,429 DEBUG Processing 14/712 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,505 DEBUG Processing 550/672 atomic regions from SNP 164872 to 165472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,525 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:18,545 DEBUG Processing 292/729 atomic regions from SNP 87325 to 87925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,625 DEBUG Processing 15/712 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,697 DEBUG Processing 551/672 atomic regions from SNP 165172 to 165772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,742 DEBUG Processing 293/729 atomic regions from SNP 87625 to 88225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,837 DEBUG Processing 16/712 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,887 DEBUG Processing 552/672 atomic regions from SNP 165472 to 166072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,937 DEBUG Processing 294/729 atomic regions from SNP 87925 to 88525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,040 DEBUG Processing 17/712 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,079 DEBUG Processing 553/672 atomic regions from SNP 165772 to 166372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,134 DEBUG Processing 295/729 atomic regions from SNP 88225 to 88825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,262 DEBUG Processing 18/712 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,270 DEBUG Processing 554/672 atomic regions from SNP 166072 to 166672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,330 DEBUG Processing 296/729 atomic regions from SNP 88525 to 89125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,461 DEBUG Processing 555/672 atomic regions from SNP 166372 to 166972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,474 DEBUG Processing 19/712 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,526 DEBUG Processing 297/729 atomic regions from SNP 88825 to 89425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,654 DEBUG Processing 556/672 atomic regions from SNP 166672 to 167272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,686 DEBUG Processing 20/712 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,720 DEBUG Processing 298/729 atomic regions from SNP 89125 to 89725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,846 DEBUG Processing 557/672 atomic regions from SNP 166972 to 167572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,909 DEBUG Processing 21/712 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,916 DEBUG Processing 299/729 atomic regions from SNP 89425 to 90025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,036 DEBUG Processing 558/672 atomic regions from SNP 167272 to 167872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,111 DEBUG Processing 300/729 atomic regions from SNP 89725 to 90325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,141 DEBUG Processing 22/712 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,227 DEBUG Processing 559/672 atomic regions from SNP 167572 to 168172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,306 DEBUG Processing 301/729 atomic regions from SNP 90025 to 90625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,348 DEBUG Processing 23/712 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,419 DEBUG Processing 560/672 atomic regions from SNP 167872 to 168472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,500 DEBUG Processing 302/729 atomic regions from SNP 90325 to 90925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,539 DEBUG Processing 24/712 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,612 DEBUG Processing 561/672 atomic regions from SNP 168172 to 168772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,697 DEBUG Processing 303/729 atomic regions from SNP 90625 to 91225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,730 DEBUG Processing 25/712 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,806 DEBUG Processing 562/672 atomic regions from SNP 168472 to 169072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,897 DEBUG Processing 304/729 atomic regions from SNP 90925 to 91525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,928 DEBUG Processing 26/712 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,007 DEBUG Processing 563/672 atomic regions from SNP 168772 to 169372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,103 DEBUG Processing 305/729 atomic regions from SNP 91225 to 91825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,127 DEBUG Processing 27/712 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,203 DEBUG Processing 564/672 atomic regions from SNP 169072 to 169672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,298 DEBUG Processing 306/729 atomic regions from SNP 91525 to 92125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,317 DEBUG Processing 28/712 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,393 DEBUG Processing 565/672 atomic regions from SNP 169372 to 169972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,505 DEBUG Processing 307/729 atomic regions from SNP 91825 to 92425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,512 DEBUG Processing 29/712 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,591 DEBUG Processing 566/672 atomic regions from SNP 169672 to 170272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,709 DEBUG Processing 30/712 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,738 DEBUG Processing 308/729 atomic regions from SNP 92125 to 92725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,785 DEBUG Processing 567/672 atomic regions from SNP 169972 to 170572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,906 DEBUG Processing 31/712 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,970 DEBUG Processing 309/729 atomic regions from SNP 92425 to 93025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,979 DEBUG Processing 568/672 atomic regions from SNP 170272 to 170872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,100 DEBUG Processing 32/712 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,174 DEBUG Processing 569/672 atomic regions from SNP 170572 to 171172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,180 DEBUG Processing 310/729 atomic regions from SNP 92725 to 93325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,293 DEBUG Processing 33/712 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,369 DEBUG Processing 570/672 atomic regions from SNP 170872 to 171472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,383 DEBUG Processing 311/729 atomic regions from SNP 93025 to 93625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,490 DEBUG Processing 34/712 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,566 DEBUG Processing 571/672 atomic regions from SNP 171172 to 171772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,595 DEBUG Processing 312/729 atomic regions from SNP 93325 to 93925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,683 DEBUG Processing 35/712 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,758 DEBUG Processing 572/672 atomic regions from SNP 171472 to 172072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,800 DEBUG Processing 313/729 atomic regions from SNP 93625 to 94225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,880 DEBUG Processing 36/712 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,953 DEBUG Processing 573/672 atomic regions from SNP 171772 to 172372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,008 DEBUG Processing 314/729 atomic regions from SNP 93925 to 94525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,071 DEBUG Processing 37/712 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,144 DEBUG Processing 574/672 atomic regions from SNP 172072 to 172672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,203 DEBUG Processing 315/729 atomic regions from SNP 94225 to 94825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,270 DEBUG Processing 38/712 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,347 DEBUG Processing 575/672 atomic regions from SNP 172372 to 172972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,406 DEBUG Processing 316/729 atomic regions from SNP 94525 to 95125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,472 DEBUG Processing 39/712 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,543 DEBUG Processing 576/672 atomic regions from SNP 172672 to 173272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,604 DEBUG Processing 317/729 atomic regions from SNP 94825 to 95425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,674 DEBUG Processing 40/712 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,735 DEBUG Processing 577/672 atomic regions from SNP 172972 to 173572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,807 DEBUG Processing 318/729 atomic regions from SNP 95125 to 95725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,876 DEBUG Processing 41/712 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,933 DEBUG Processing 578/672 atomic regions from SNP 173272 to 173872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,006 DEBUG Processing 319/729 atomic regions from SNP 95425 to 96025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,077 DEBUG Processing 42/712 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,129 DEBUG Processing 579/672 atomic regions from SNP 173572 to 174172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,222 DEBUG Processing 320/729 atomic regions from SNP 95725 to 96325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,277 DEBUG Processing 43/712 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,323 DEBUG Processing 580/672 atomic regions from SNP 173872 to 174472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,457 DEBUG Processing 321/729 atomic regions from SNP 96025 to 96625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,484 DEBUG Processing 44/712 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,525 DEBUG Processing 581/672 atomic regions from SNP 174172 to 174772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,686 DEBUG Processing 322/729 atomic regions from SNP 96325 to 96925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,689 DEBUG Processing 45/712 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,722 DEBUG Processing 582/672 atomic regions from SNP 174472 to 175072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,891 DEBUG Processing 46/712 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,918 DEBUG Processing 583/672 atomic regions from SNP 174772 to 175372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,920 DEBUG Processing 323/729 atomic regions from SNP 96625 to 97225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,093 DEBUG Processing 47/712 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,113 DEBUG Processing 584/672 atomic regions from SNP 175072 to 175672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,146 DEBUG Processing 324/729 atomic regions from SNP 96925 to 97525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,292 DEBUG Processing 48/712 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,309 DEBUG Processing 585/672 atomic regions from SNP 175372 to 175972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,373 DEBUG Processing 325/729 atomic regions from SNP 97225 to 97825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,491 DEBUG Processing 49/712 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,508 DEBUG Processing 586/672 atomic regions from SNP 175672 to 176272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,603 DEBUG Processing 326/729 atomic regions from SNP 97525 to 98125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,685 DEBUG Processing 50/712 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,701 DEBUG Processing 587/672 atomic regions from SNP 175972 to 176572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,833 DEBUG Processing 327/729 atomic regions from SNP 97825 to 98425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,894 DEBUG Processing 51/712 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,896 DEBUG Processing 588/672 atomic regions from SNP 176272 to 176872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,063 DEBUG Processing 328/729 atomic regions from SNP 98125 to 98725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,092 DEBUG Processing 589/672 atomic regions from SNP 176572 to 177172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,109 DEBUG Processing 52/712 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,294 DEBUG Processing 590/672 atomic regions from SNP 176872 to 177472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,298 DEBUG Processing 329/729 atomic regions from SNP 98425 to 99025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,311 DEBUG Processing 53/712 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,494 DEBUG Processing 591/672 atomic regions from SNP 177172 to 177772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,514 DEBUG Processing 54/712 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,528 DEBUG Processing 330/729 atomic regions from SNP 98725 to 99325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,693 DEBUG Processing 592/672 atomic regions from SNP 177472 to 178072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,714 DEBUG Processing 55/712 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,766 DEBUG Processing 331/729 atomic regions from SNP 99025 to 99625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,886 DEBUG Processing 593/672 atomic regions from SNP 177772 to 178372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,910 DEBUG Processing 56/712 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,997 DEBUG Processing 332/729 atomic regions from SNP 99325 to 99925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,087 DEBUG Processing 594/672 atomic regions from SNP 178072 to 178672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,114 DEBUG Processing 57/712 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,233 DEBUG Processing 333/729 atomic regions from SNP 99625 to 100225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,284 DEBUG Processing 595/672 atomic regions from SNP 178372 to 178972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,313 DEBUG Processing 58/712 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,453 DEBUG Processing 334/729 atomic regions from SNP 99925 to 100525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,482 DEBUG Processing 596/672 atomic regions from SNP 178672 to 179272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,516 DEBUG Processing 59/712 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,671 DEBUG Processing 335/729 atomic regions from SNP 100225 to 100825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,676 DEBUG Processing 597/672 atomic regions from SNP 178972 to 179572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,717 DEBUG Processing 60/712 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,873 DEBUG Processing 598/672 atomic regions from SNP 179272 to 179872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,878 DEBUG Processing 336/729 atomic regions from SNP 100525 to 101125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,920 DEBUG Processing 61/712 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,071 DEBUG Processing 599/672 atomic regions from SNP 179572 to 180172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,100 DEBUG Processing 337/729 atomic regions from SNP 100825 to 101425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,129 DEBUG Processing 62/712 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,267 DEBUG Processing 600/672 atomic regions from SNP 179872 to 180472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,316 DEBUG Processing 338/729 atomic regions from SNP 101125 to 101725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,329 DEBUG Processing 63/712 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,464 DEBUG Processing 601/672 atomic regions from SNP 180172 to 180772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,531 DEBUG Processing 64/712 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,540 DEBUG Processing 339/729 atomic regions from SNP 101425 to 102025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,654 DEBUG Processing 602/672 atomic regions from SNP 180472 to 181072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,728 DEBUG Processing 65/712 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,774 DEBUG Processing 340/729 atomic regions from SNP 101725 to 102325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,844 DEBUG Processing 603/672 atomic regions from SNP 180772 to 181372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,928 DEBUG Processing 66/712 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,998 DEBUG Processing 341/729 atomic regions from SNP 102025 to 102625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,040 DEBUG Processing 604/672 atomic regions from SNP 181072 to 181672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,132 DEBUG Processing 67/712 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,200 DEBUG Processing 342/729 atomic regions from SNP 102325 to 102925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,232 DEBUG Processing 605/672 atomic regions from SNP 181372 to 181972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,334 DEBUG Processing 68/712 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,399 DEBUG Processing 343/729 atomic regions from SNP 102625 to 103225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,425 DEBUG Processing 606/672 atomic regions from SNP 181672 to 182272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,536 DEBUG Processing 69/712 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,600 DEBUG Processing 344/729 atomic regions from SNP 102925 to 103525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,620 DEBUG Processing 607/672 atomic regions from SNP 181972 to 182572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,735 DEBUG Processing 70/712 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,803 DEBUG Processing 345/729 atomic regions from SNP 103225 to 103825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,820 DEBUG Processing 608/672 atomic regions from SNP 182272 to 182872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,942 DEBUG Processing 71/712 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,004 DEBUG Processing 346/729 atomic regions from SNP 103525 to 104125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,016 DEBUG Processing 609/672 atomic regions from SNP 182572 to 183172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,143 DEBUG Processing 72/712 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,207 DEBUG Processing 347/729 atomic regions from SNP 103825 to 104425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,217 DEBUG Processing 610/672 atomic regions from SNP 182872 to 183472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,342 DEBUG Processing 73/712 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,411 DEBUG Processing 348/729 atomic regions from SNP 104125 to 104725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,416 DEBUG Processing 611/672 atomic regions from SNP 183172 to 183772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,541 DEBUG Processing 74/712 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,614 DEBUG Processing 612/672 atomic regions from SNP 183472 to 184072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,621 DEBUG Processing 349/729 atomic regions from SNP 104425 to 105025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,739 DEBUG Processing 75/712 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,813 DEBUG Processing 613/672 atomic regions from SNP 183772 to 184372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,844 DEBUG Processing 350/729 atomic regions from SNP 104725 to 105325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,940 DEBUG Processing 76/712 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,016 DEBUG Processing 614/672 atomic regions from SNP 184072 to 184672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,073 DEBUG Processing 351/729 atomic regions from SNP 105025 to 105625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,134 DEBUG Processing 77/712 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,217 DEBUG Processing 615/672 atomic regions from SNP 184372 to 184972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,277 DEBUG Processing 352/729 atomic regions from SNP 105325 to 105925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,331 DEBUG Processing 78/712 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,434 DEBUG Processing 616/672 atomic regions from SNP 184672 to 185272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,480 DEBUG Processing 353/729 atomic regions from SNP 105625 to 106225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,528 DEBUG Processing 79/712 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,637 DEBUG Processing 617/672 atomic regions from SNP 184972 to 185572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,706 DEBUG Processing 354/729 atomic regions from SNP 105925 to 106525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,722 DEBUG Processing 80/712 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,830 DEBUG Processing 618/672 atomic regions from SNP 185272 to 185872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,917 DEBUG Processing 81/712 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,929 DEBUG Processing 355/729 atomic regions from SNP 106225 to 106825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,025 DEBUG Processing 619/672 atomic regions from SNP 185572 to 186172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,111 DEBUG Processing 82/712 atomic regions from SNP 24381 to 24982 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,148 DEBUG Processing 356/729 atomic regions from SNP 106525 to 107125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,215 DEBUG Processing 620/672 atomic regions from SNP 185872 to 186472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,299 DEBUG Processing 83/712 atomic regions from SNP 24682 to 25283 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,375 DEBUG Processing 357/729 atomic regions from SNP 106825 to 107425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,407 DEBUG Processing 621/672 atomic regions from SNP 186172 to 186772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,493 DEBUG Processing 84/712 atomic regions from SNP 24983 to 25584 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,602 DEBUG Processing 358/729 atomic regions from SNP 107125 to 107725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,604 DEBUG Processing 622/672 atomic regions from SNP 186472 to 187072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,690 DEBUG Processing 85/712 atomic regions from SNP 25284 to 25885 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,806 DEBUG Processing 623/672 atomic regions from SNP 186772 to 187372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,827 DEBUG Processing 359/729 atomic regions from SNP 107425 to 108025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,893 DEBUG Processing 86/712 atomic regions from SNP 25585 to 26186 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,003 DEBUG Processing 624/672 atomic regions from SNP 187072 to 187672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,061 DEBUG Processing 360/729 atomic regions from SNP 107725 to 108325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,092 DEBUG Processing 87/712 atomic regions from SNP 25886 to 26487 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,199 DEBUG Processing 625/672 atomic regions from SNP 187372 to 187972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,274 DEBUG Processing 361/729 atomic regions from SNP 108025 to 108625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,289 DEBUG Processing 88/712 atomic regions from SNP 26187 to 26788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,392 DEBUG Processing 626/672 atomic regions from SNP 187672 to 188272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,487 DEBUG Processing 89/712 atomic regions from SNP 26488 to 27089 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,493 DEBUG Processing 362/729 atomic regions from SNP 108325 to 108925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,581 DEBUG Processing 627/672 atomic regions from SNP 187972 to 188572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,687 DEBUG Processing 90/712 atomic regions from SNP 26789 to 27390 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,700 DEBUG Processing 363/729 atomic regions from SNP 108625 to 109225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,774 DEBUG Processing 628/672 atomic regions from SNP 188272 to 188872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,881 DEBUG Processing 91/712 atomic regions from SNP 27090 to 27691 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,905 DEBUG Processing 364/729 atomic regions from SNP 108925 to 109525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,965 DEBUG Processing 629/672 atomic regions from SNP 188572 to 189172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,076 DEBUG Processing 92/712 atomic regions from SNP 27391 to 27992 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,128 DEBUG Processing 365/729 atomic regions from SNP 109225 to 109825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,160 DEBUG Processing 630/672 atomic regions from SNP 188872 to 189472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,271 DEBUG Processing 93/712 atomic regions from SNP 27692 to 28293 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,353 DEBUG Processing 631/672 atomic regions from SNP 189172 to 189772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,360 DEBUG Processing 366/729 atomic regions from SNP 109525 to 110125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,463 DEBUG Processing 94/712 atomic regions from SNP 27993 to 28594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,548 DEBUG Processing 632/672 atomic regions from SNP 189472 to 190072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,593 DEBUG Processing 367/729 atomic regions from SNP 109825 to 110425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,656 DEBUG Processing 95/712 atomic regions from SNP 28294 to 28895 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,747 DEBUG Processing 633/672 atomic regions from SNP 189772 to 190372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,824 DEBUG Processing 368/729 atomic regions from SNP 110125 to 110725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,848 DEBUG Processing 96/712 atomic regions from SNP 28595 to 29196 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,945 DEBUG Processing 634/672 atomic regions from SNP 190072 to 190672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,051 DEBUG Processing 369/729 atomic regions from SNP 110425 to 111025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,058 DEBUG Processing 97/712 atomic regions from SNP 28896 to 29497 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,140 DEBUG Processing 635/672 atomic regions from SNP 190372 to 190972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,269 DEBUG Processing 98/712 atomic regions from SNP 29197 to 29798 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,276 DEBUG Processing 370/729 atomic regions from SNP 110725 to 111325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,331 DEBUG Processing 636/672 atomic regions from SNP 190672 to 191272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,480 DEBUG Processing 99/712 atomic regions from SNP 29498 to 30099 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,501 DEBUG Processing 371/729 atomic regions from SNP 111025 to 111625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,525 DEBUG Processing 637/672 atomic regions from SNP 190972 to 191572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,696 DEBUG Processing 100/712 atomic regions from SNP 29799 to 30400 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,723 DEBUG Processing 638/672 atomic regions from SNP 191272 to 191872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,727 DEBUG Processing 372/729 atomic regions from SNP 111325 to 111925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,909 DEBUG Processing 101/712 atomic regions from SNP 30100 to 30701 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,933 DEBUG Processing 639/672 atomic regions from SNP 191572 to 192172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,956 DEBUG Processing 373/729 atomic regions from SNP 111625 to 112225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,117 DEBUG Processing 102/712 atomic regions from SNP 30401 to 31002 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,144 DEBUG Processing 640/672 atomic regions from SNP 191872 to 192472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,183 DEBUG Processing 374/729 atomic regions from SNP 111925 to 112525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,327 DEBUG Processing 103/712 atomic regions from SNP 30702 to 31303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,340 DEBUG Processing 641/672 atomic regions from SNP 192172 to 192772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,413 DEBUG Processing 375/729 atomic regions from SNP 112225 to 112825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,532 DEBUG Processing 104/712 atomic regions from SNP 31003 to 31604 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,537 DEBUG Processing 642/672 atomic regions from SNP 192472 to 193072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,641 DEBUG Processing 376/729 atomic regions from SNP 112525 to 113125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,729 DEBUG Processing 105/712 atomic regions from SNP 31304 to 31905 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,737 DEBUG Processing 643/672 atomic regions from SNP 192772 to 193372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,872 DEBUG Processing 377/729 atomic regions from SNP 112825 to 113425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,922 DEBUG Processing 106/712 atomic regions from SNP 31605 to 32206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,932 DEBUG Processing 644/672 atomic regions from SNP 193072 to 193672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,099 DEBUG Processing 378/729 atomic regions from SNP 113125 to 113725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,118 DEBUG Processing 107/712 atomic regions from SNP 31906 to 32507 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,129 DEBUG Processing 645/672 atomic regions from SNP 193372 to 193972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,315 DEBUG Processing 108/712 atomic regions from SNP 32207 to 32808 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,317 DEBUG Processing 379/729 atomic regions from SNP 113425 to 114025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,325 DEBUG Processing 646/672 atomic regions from SNP 193672 to 194272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,511 DEBUG Processing 109/712 atomic regions from SNP 32508 to 33109 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,528 DEBUG Processing 647/672 atomic regions from SNP 193972 to 194572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,531 DEBUG Processing 380/729 atomic regions from SNP 113725 to 114325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,709 DEBUG Processing 110/712 atomic regions from SNP 32809 to 33410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,737 DEBUG Processing 648/672 atomic regions from SNP 194272 to 194872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,763 DEBUG Processing 381/729 atomic regions from SNP 114025 to 114625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,903 DEBUG Processing 111/712 atomic regions from SNP 33110 to 33711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,935 DEBUG Processing 649/672 atomic regions from SNP 194572 to 195172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,987 DEBUG Processing 382/729 atomic regions from SNP 114325 to 114925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,101 DEBUG Processing 112/712 atomic regions from SNP 33411 to 34012 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,136 DEBUG Processing 650/672 atomic regions from SNP 194872 to 195472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,188 DEBUG Processing 383/729 atomic regions from SNP 114625 to 115225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,293 DEBUG Processing 113/712 atomic regions from SNP 33712 to 34313 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,337 DEBUG Processing 651/672 atomic regions from SNP 195172 to 195772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,411 DEBUG Processing 384/729 atomic regions from SNP 114925 to 115525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,488 DEBUG Processing 114/712 atomic regions from SNP 34013 to 34614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,544 DEBUG Processing 652/672 atomic regions from SNP 195472 to 196072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,624 DEBUG Processing 385/729 atomic regions from SNP 115225 to 115825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,709 DEBUG Processing 115/712 atomic regions from SNP 34314 to 34915 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,748 DEBUG Processing 653/672 atomic regions from SNP 195772 to 196372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,844 DEBUG Processing 386/729 atomic regions from SNP 115525 to 116125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,921 DEBUG Processing 116/712 atomic regions from SNP 34615 to 35216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,974 DEBUG Processing 654/672 atomic regions from SNP 196072 to 196672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,066 DEBUG Processing 387/729 atomic regions from SNP 115825 to 116425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,126 DEBUG Processing 117/712 atomic regions from SNP 34916 to 35517 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,198 DEBUG Processing 655/672 atomic regions from SNP 196372 to 196972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,266 DEBUG Processing 388/729 atomic regions from SNP 116125 to 116725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,321 DEBUG Processing 118/712 atomic regions from SNP 35217 to 35818 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,401 DEBUG Processing 656/672 atomic regions from SNP 196672 to 197272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,466 DEBUG Processing 389/729 atomic regions from SNP 116425 to 117025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,515 DEBUG Processing 119/712 atomic regions from SNP 35518 to 36119 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,620 DEBUG Processing 657/672 atomic regions from SNP 196972 to 197572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,668 DEBUG Processing 390/729 atomic regions from SNP 116725 to 117325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,707 DEBUG Processing 120/712 atomic regions from SNP 35819 to 36420 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,841 DEBUG Processing 658/672 atomic regions from SNP 197272 to 197872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,875 DEBUG Processing 391/729 atomic regions from SNP 117025 to 117625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,900 DEBUG Processing 121/712 atomic regions from SNP 36120 to 36721 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,067 DEBUG Processing 659/672 atomic regions from SNP 197572 to 198172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,090 DEBUG Processing 392/729 atomic regions from SNP 117325 to 117925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,096 DEBUG Processing 122/712 atomic regions from SNP 36421 to 37022 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,283 DEBUG Processing 660/672 atomic regions from SNP 197872 to 198472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,290 DEBUG Processing 123/712 atomic regions from SNP 36722 to 37323 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,291 DEBUG Processing 393/729 atomic regions from SNP 117625 to 118225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,486 DEBUG Processing 661/672 atomic regions from SNP 198172 to 198772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,487 DEBUG Processing 124/712 atomic regions from SNP 37023 to 37624 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,490 DEBUG Processing 394/729 atomic regions from SNP 117925 to 118525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,686 DEBUG Processing 125/712 atomic regions from SNP 37324 to 37925 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,686 DEBUG Processing 662/672 atomic regions from SNP 198472 to 199072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,691 DEBUG Processing 395/729 atomic regions from SNP 118225 to 118825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,884 DEBUG Processing 663/672 atomic regions from SNP 198772 to 199372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,886 DEBUG Processing 126/712 atomic regions from SNP 37625 to 38226 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,892 DEBUG Processing 396/729 atomic regions from SNP 118525 to 119125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,084 DEBUG Processing 127/712 atomic regions from SNP 37926 to 38527 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,091 DEBUG Processing 397/729 atomic regions from SNP 118825 to 119425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,093 DEBUG Processing 664/672 atomic regions from SNP 199072 to 199672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,289 DEBUG Processing 128/712 atomic regions from SNP 38227 to 38828 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,296 DEBUG Processing 665/672 atomic regions from SNP 199372 to 199972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,298 DEBUG Processing 398/729 atomic regions from SNP 119125 to 119725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,492 DEBUG Processing 129/712 atomic regions from SNP 38528 to 39129 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,495 DEBUG Processing 666/672 atomic regions from SNP 199672 to 200272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,500 DEBUG Processing 399/729 atomic regions from SNP 119425 to 120025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,692 DEBUG Processing 130/712 atomic regions from SNP 38829 to 39430 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,694 DEBUG Processing 667/672 atomic regions from SNP 199972 to 200572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,700 DEBUG Processing 400/729 atomic regions from SNP 119725 to 120325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,892 DEBUG Processing 668/672 atomic regions from SNP 200272 to 200872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,893 DEBUG Processing 131/712 atomic regions from SNP 39130 to 39731 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,902 DEBUG Processing 401/729 atomic regions from SNP 120025 to 120625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,091 DEBUG Processing 669/672 atomic regions from SNP 200572 to 201172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,092 DEBUG Processing 132/712 atomic regions from SNP 39431 to 40032 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,103 DEBUG Processing 402/729 atomic regions from SNP 120325 to 120925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,286 DEBUG Processing 670/672 atomic regions from SNP 200872 to 201472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,293 DEBUG Processing 133/712 atomic regions from SNP 39732 to 40333 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,302 DEBUG Processing 403/729 atomic regions from SNP 120625 to 121225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,487 DEBUG Processing 671/672 atomic regions from SNP 201172 to 201772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,493 DEBUG Processing 134/712 atomic regions from SNP 40033 to 40634 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,502 DEBUG Processing 404/729 atomic regions from SNP 120925 to 121525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,686 DEBUG Processing 672/672 atomic regions from SNP 201472 to 202072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,691 DEBUG Processing 135/712 atomic regions from SNP 40334 to 40935 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,699 DEBUG Processing 405/729 atomic regions from SNP 121225 to 121825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,750 DEBUG Segmenting atomic regions: 2025-01-31 09:54:42,802 DEBUG Unique SNPs positions in subchromosome 2: 202073 2025-01-31 09:54:42,840 DEBUG Processing 1/681 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,890 DEBUG Processing 136/712 atomic regions from SNP 40635 to 41236 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,909 DEBUG Processing 406/729 atomic regions from SNP 121525 to 122125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,032 DEBUG Processing 2/681 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,085 DEBUG Processing 137/712 atomic regions from SNP 40936 to 41537 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,112 DEBUG Processing 407/729 atomic regions from SNP 121825 to 122425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,223 DEBUG Processing 3/681 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,286 DEBUG Processing 138/712 atomic regions from SNP 41237 to 41838 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,325 DEBUG Processing 408/729 atomic regions from SNP 122125 to 122725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,443 DEBUG Processing 4/681 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,503 DEBUG Processing 139/712 atomic regions from SNP 41538 to 42139 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,558 DEBUG Processing 409/729 atomic regions from SNP 122425 to 123025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,640 DEBUG Processing 5/681 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,704 DEBUG Processing 140/712 atomic regions from SNP 41839 to 42440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,783 DEBUG Processing 410/729 atomic regions from SNP 122725 to 123325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,842 DEBUG Processing 6/681 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,903 DEBUG Processing 141/712 atomic regions from SNP 42140 to 42741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,004 DEBUG Processing 411/729 atomic regions from SNP 123025 to 123625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,033 DEBUG Processing 7/681 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,104 DEBUG Processing 142/712 atomic regions from SNP 42441 to 43042 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,220 DEBUG Processing 412/729 atomic regions from SNP 123325 to 123925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,224 DEBUG Processing 8/681 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,303 DEBUG Processing 143/712 atomic regions from SNP 42742 to 43343 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,417 DEBUG Processing 9/681 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,428 DEBUG Processing 413/729 atomic regions from SNP 123625 to 124225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,506 DEBUG Processing 144/712 atomic regions from SNP 43043 to 43644 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,619 DEBUG Processing 10/681 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,638 DEBUG Processing 414/729 atomic regions from SNP 123925 to 124525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,714 DEBUG Processing 145/712 atomic regions from SNP 43344 to 43945 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,819 DEBUG Processing 11/681 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,870 DEBUG Processing 415/729 atomic regions from SNP 124225 to 124825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,912 DEBUG Processing 146/712 atomic regions from SNP 43645 to 44246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,011 DEBUG Processing 12/681 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,086 DEBUG Processing 416/729 atomic regions from SNP 124525 to 125125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,112 DEBUG Processing 147/712 atomic regions from SNP 43946 to 44547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,204 DEBUG Processing 13/681 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,288 DEBUG Processing 417/729 atomic regions from SNP 124825 to 125425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,312 DEBUG Processing 148/712 atomic regions from SNP 44247 to 44848 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,394 DEBUG Processing 14/681 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,500 DEBUG Processing 418/729 atomic regions from SNP 125125 to 125725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,508 DEBUG Processing 149/712 atomic regions from SNP 44548 to 45149 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,581 DEBUG Processing 15/681 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,702 DEBUG Processing 150/712 atomic regions from SNP 44849 to 45450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,719 DEBUG Processing 419/729 atomic regions from SNP 125425 to 126025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,768 DEBUG Processing 16/681 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,899 DEBUG Processing 151/712 atomic regions from SNP 45150 to 45751 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,938 DEBUG Processing 420/729 atomic regions from SNP 125725 to 126325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,963 DEBUG Processing 17/681 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,092 DEBUG Processing 152/712 atomic regions from SNP 45451 to 46052 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,152 DEBUG Processing 18/681 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,164 DEBUG Processing 421/729 atomic regions from SNP 126025 to 126625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,287 DEBUG Processing 153/712 atomic regions from SNP 45752 to 46353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,340 DEBUG Processing 19/681 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,388 DEBUG Processing 422/729 atomic regions from SNP 126325 to 126925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,487 DEBUG Processing 154/712 atomic regions from SNP 46053 to 46654 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,529 DEBUG Processing 20/681 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,592 DEBUG Processing 423/729 atomic regions from SNP 126625 to 127225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,678 DEBUG Processing 155/712 atomic regions from SNP 46354 to 46955 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,727 DEBUG Processing 21/681 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,803 DEBUG Processing 424/729 atomic regions from SNP 126925 to 127525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,872 DEBUG Processing 156/712 atomic regions from SNP 46655 to 47256 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,918 DEBUG Processing 22/681 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,010 DEBUG Processing 425/729 atomic regions from SNP 127225 to 127825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,066 DEBUG Processing 157/712 atomic regions from SNP 46956 to 47557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,103 DEBUG Processing 23/681 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,208 DEBUG Processing 426/729 atomic regions from SNP 127525 to 128125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,256 DEBUG Processing 158/712 atomic regions from SNP 47257 to 47858 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,288 DEBUG Processing 24/681 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,289 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:54:47,404 DEBUG Processing 427/729 atomic regions from SNP 127825 to 128425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,449 DEBUG Processing 159/712 atomic regions from SNP 47558 to 48159 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,477 DEBUG Processing 25/681 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,605 DEBUG Processing 428/729 atomic regions from SNP 128125 to 128725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,647 DEBUG Processing 160/712 atomic regions from SNP 47859 to 48460 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,672 DEBUG Processing 26/681 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,801 DEBUG Processing 429/729 atomic regions from SNP 128425 to 129025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,841 DEBUG Processing 161/712 atomic regions from SNP 48160 to 48761 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,864 DEBUG Processing 27/681 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,001 DEBUG Processing 430/729 atomic regions from SNP 128725 to 129325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,037 DEBUG Processing 162/712 atomic regions from SNP 48461 to 49062 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,056 DEBUG Processing 28/681 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,203 DEBUG Processing 431/729 atomic regions from SNP 129025 to 129625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,231 DEBUG Processing 163/712 atomic regions from SNP 48762 to 49363 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,247 DEBUG Processing 29/681 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,405 DEBUG Processing 432/729 atomic regions from SNP 129325 to 129925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,428 DEBUG Processing 164/712 atomic regions from SNP 49063 to 49664 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,442 DEBUG Processing 30/681 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,604 DEBUG Processing 433/729 atomic regions from SNP 129625 to 130225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,624 DEBUG Processing 165/712 atomic regions from SNP 49364 to 49965 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,633 DEBUG Processing 31/681 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,802 DEBUG Processing 434/729 atomic regions from SNP 129925 to 130525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,826 DEBUG Processing 32/681 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,841 DEBUG Processing 166/712 atomic regions from SNP 49665 to 50266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,007 DEBUG Processing 435/729 atomic regions from SNP 130225 to 130825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,018 DEBUG Processing 33/681 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,056 DEBUG Processing 167/712 atomic regions from SNP 49966 to 50567 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,223 DEBUG Processing 436/729 atomic regions from SNP 130525 to 131125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,234 DEBUG Processing 34/681 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,255 DEBUG Processing 168/712 atomic regions from SNP 50267 to 50868 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,436 DEBUG Processing 437/729 atomic regions from SNP 130825 to 131425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,455 DEBUG Processing 35/681 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,486 DEBUG Processing 169/712 atomic regions from SNP 50568 to 51169 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,660 DEBUG Processing 438/729 atomic regions from SNP 131125 to 131725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,662 DEBUG Processing 36/681 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,693 DEBUG Processing 170/712 atomic regions from SNP 50869 to 51470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,851 DEBUG Processing 37/681 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,884 DEBUG Processing 439/729 atomic regions from SNP 131425 to 132025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,897 DEBUG Processing 171/712 atomic regions from SNP 51170 to 51771 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,040 DEBUG Processing 38/681 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,097 DEBUG Processing 440/729 atomic regions from SNP 131725 to 132325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,099 DEBUG Processing 172/712 atomic regions from SNP 51471 to 52072 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,238 DEBUG Processing 39/681 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,293 DEBUG Processing 173/712 atomic regions from SNP 51772 to 52373 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,297 DEBUG Processing 441/729 atomic regions from SNP 132025 to 132625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,429 DEBUG Processing 40/681 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,489 DEBUG Processing 174/712 atomic regions from SNP 52073 to 52674 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,497 DEBUG Processing 442/729 atomic regions from SNP 132325 to 132925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,615 DEBUG Processing 41/681 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,687 DEBUG Processing 175/712 atomic regions from SNP 52374 to 52975 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,691 DEBUG Processing 443/729 atomic regions from SNP 132625 to 133225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,800 DEBUG Processing 42/681 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,880 DEBUG Processing 176/712 atomic regions from SNP 52675 to 53276 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,887 DEBUG Processing 444/729 atomic regions from SNP 132925 to 133525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,985 DEBUG Processing 43/681 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,073 DEBUG Processing 177/712 atomic regions from SNP 52976 to 53577 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,084 DEBUG Processing 445/729 atomic regions from SNP 133225 to 133825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,176 DEBUG Processing 44/681 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,267 DEBUG Processing 178/712 atomic regions from SNP 53277 to 53878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,282 DEBUG Processing 446/729 atomic regions from SNP 133525 to 134125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,367 DEBUG Processing 45/681 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,461 DEBUG Processing 179/712 atomic regions from SNP 53578 to 54179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,482 DEBUG Processing 447/729 atomic regions from SNP 133825 to 134425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,556 DEBUG Processing 46/681 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,655 DEBUG Processing 180/712 atomic regions from SNP 53879 to 54479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,679 DEBUG Processing 448/729 atomic regions from SNP 134125 to 134725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,744 DEBUG Processing 47/681 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,848 DEBUG Processing 181/712 atomic regions from SNP 54179 to 54779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,876 DEBUG Processing 449/729 atomic regions from SNP 134425 to 135025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,931 DEBUG Processing 48/681 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,045 DEBUG Processing 182/712 atomic regions from SNP 54479 to 55079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,078 DEBUG Processing 450/729 atomic regions from SNP 134725 to 135325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,121 DEBUG Processing 49/681 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,239 DEBUG Processing 183/712 atomic regions from SNP 54779 to 55379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,277 DEBUG Processing 451/729 atomic regions from SNP 135025 to 135625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,309 DEBUG Processing 50/681 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,433 DEBUG Processing 184/712 atomic regions from SNP 55079 to 55679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,477 DEBUG Processing 452/729 atomic regions from SNP 135325 to 135925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,499 DEBUG Processing 51/681 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,625 DEBUG Processing 185/712 atomic regions from SNP 55379 to 55979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,692 DEBUG Processing 52/681 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,699 DEBUG Processing 453/729 atomic regions from SNP 135625 to 136225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,822 DEBUG Processing 186/712 atomic regions from SNP 55679 to 56279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,909 DEBUG Processing 53/681 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,925 DEBUG Processing 454/729 atomic regions from SNP 135925 to 136525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,012 DEBUG Processing 187/712 atomic regions from SNP 55979 to 56579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,122 DEBUG Processing 54/681 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,153 DEBUG Processing 455/729 atomic regions from SNP 136225 to 136825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,204 DEBUG Processing 188/712 atomic regions from SNP 56279 to 56879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,332 DEBUG Processing 55/681 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,367 DEBUG Processing 456/729 atomic regions from SNP 136525 to 137125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,400 DEBUG Processing 189/712 atomic regions from SNP 56579 to 57179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,528 DEBUG Processing 56/681 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,591 DEBUG Processing 190/712 atomic regions from SNP 56879 to 57479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,594 DEBUG Processing 457/729 atomic regions from SNP 136825 to 137425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,716 DEBUG Processing 57/681 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,783 DEBUG Processing 191/712 atomic regions from SNP 57179 to 57779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,796 DEBUG Processing 458/729 atomic regions from SNP 137125 to 137725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,904 DEBUG Processing 58/681 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,974 DEBUG Processing 192/712 atomic regions from SNP 57479 to 58079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,992 DEBUG Processing 459/729 atomic regions from SNP 137425 to 138025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,104 DEBUG Processing 59/681 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,163 DEBUG Processing 193/712 atomic regions from SNP 57779 to 58379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,186 DEBUG Processing 460/729 atomic regions from SNP 137725 to 138325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,303 DEBUG Processing 60/681 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,355 DEBUG Processing 194/712 atomic regions from SNP 58079 to 58679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,382 DEBUG Processing 461/729 atomic regions from SNP 138025 to 138625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,518 DEBUG Processing 61/681 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,549 DEBUG Processing 195/712 atomic regions from SNP 58379 to 58979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,576 DEBUG Processing 462/729 atomic regions from SNP 138325 to 138925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,746 DEBUG Processing 62/681 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,747 DEBUG Processing 196/712 atomic regions from SNP 58679 to 59279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,770 DEBUG Processing 463/729 atomic regions from SNP 138625 to 139225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,943 DEBUG Processing 197/712 atomic regions from SNP 58979 to 59579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,953 DEBUG Processing 63/681 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,967 DEBUG Processing 464/729 atomic regions from SNP 138925 to 139525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,142 DEBUG Processing 198/712 atomic regions from SNP 59279 to 59879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,150 DEBUG Processing 64/681 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,168 DEBUG Processing 465/729 atomic regions from SNP 139225 to 139825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,335 DEBUG Processing 199/712 atomic regions from SNP 59579 to 60179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,344 DEBUG Processing 65/681 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,368 DEBUG Processing 466/729 atomic regions from SNP 139525 to 140125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,535 DEBUG Processing 200/712 atomic regions from SNP 59879 to 60479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,543 DEBUG Processing 66/681 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,574 DEBUG Processing 467/729 atomic regions from SNP 139825 to 140425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,725 DEBUG Processing 201/712 atomic regions from SNP 60179 to 60779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,736 DEBUG Processing 67/681 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,771 DEBUG Processing 468/729 atomic regions from SNP 140125 to 140725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,795 DEBUG Subchromosome time: 170.47237929143012, subchromosome SNPs: 202073 2025-01-31 09:54:55,795 DEBUG Estimated BADs: [0.43, 2.16, 8.64, 2.16, 6.48, 4.32, 2.16, 0.72, 2.16, 4.32, 0.72, 10.80, 2.16, 12.96, 2.16, 10.80, 4.32, 1.08, 4.32, 0.54, 2.16, 0.54, 2.16, 0.54, 1.08, 2.16, 6.48, 2.16] SNP counts: [180, 21320, 4065, 14148, 3998, 6238, 3596, 6161, 2944, 8572, 1305, 634, 1166, 965, 2231, 2429, 28190, 2727, 13164, 10511, 2695, 19744, 12653, 13797, 3305, 9391, 1421, 4703] SNP IDs counts: [180, 21320, 4065, 14148, 3998, 6238, 3596, 6161, 2944, 8572, 1305, 634, 1166, 965, 2231, 2429, 28190, 2727, 13164, 10511, 2695, 19744, 12653, 13797, 3305, 9391, 1421, 4703] Critical gap: 618215bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.03Mbp], 5.13Mbp[0.71Mbp], 19.70Mbp, 21.84Mbp, 29.86Mbp, 31.95Mbp, 35.27Mbp, 37.32Mbp, 40.89Mbp, 45.28Mbp, 49.90Mbp, 50.77Mbp, 51.11Mbp, 51.88Mbp, 52.40Mbp, 54.35Mbp, 55.64Mbp, 71.26Mbp, 72.79Mbp, 79.96Mbp, 86.15Mbp, 87.62Mbp, 99.03Mbp, 106.09Mbp, 114.21Mbp, 116.09Mbp, 121.25Mbp, 121.99Mbp, 124.90Mbp] 2025-01-31 09:54:55,795 DEBUG chr14 time: 170.47292246855795 s 2025-01-31 09:54:55,921 DEBUG Processing 202/712 atomic regions from SNP 60479 to 61079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,922 DEBUG chr14: Fitting background model for 28 segments 2025-01-31 09:54:55,928 DEBUG Processing 68/681 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,969 DEBUG Processing 469/729 atomic regions from SNP 140425 to 141025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,120 DEBUG Processing 203/712 atomic regions from SNP 60779 to 61379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,123 DEBUG Processing 69/681 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,170 DEBUG Processing 470/729 atomic regions from SNP 140725 to 141325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,317 DEBUG Processing 70/681 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,321 DEBUG Processing 204/712 atomic regions from SNP 61079 to 61679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,369 DEBUG Processing 471/729 atomic regions from SNP 141025 to 141625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,521 DEBUG Processing 71/681 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,525 DEBUG Processing 205/712 atomic regions from SNP 61379 to 61979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,568 DEBUG Processing 472/729 atomic regions from SNP 141325 to 141925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,715 DEBUG Processing 72/681 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,728 DEBUG Processing 206/712 atomic regions from SNP 61679 to 62279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,768 DEBUG Processing 473/729 atomic regions from SNP 141625 to 142225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,906 DEBUG Processing 73/681 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,930 DEBUG Processing 207/712 atomic regions from SNP 61979 to 62579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,970 DEBUG Processing 474/729 atomic regions from SNP 141925 to 142525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,097 DEBUG Processing 74/681 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,130 DEBUG Processing 208/712 atomic regions from SNP 62279 to 62879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,168 DEBUG Processing 475/729 atomic regions from SNP 142225 to 142825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,289 DEBUG Processing 75/681 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,331 DEBUG Processing 209/712 atomic regions from SNP 62579 to 63179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,364 DEBUG Processing 476/729 atomic regions from SNP 142525 to 143125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,483 DEBUG Processing 76/681 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,534 DEBUG Processing 210/712 atomic regions from SNP 62879 to 63479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,560 DEBUG Processing 477/729 atomic regions from SNP 142825 to 143425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,676 DEBUG Processing 77/681 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,736 DEBUG Processing 211/712 atomic regions from SNP 63179 to 63779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,758 DEBUG Processing 478/729 atomic regions from SNP 143125 to 143725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,867 DEBUG Processing 78/681 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,936 DEBUG Processing 212/712 atomic regions from SNP 63479 to 64079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,957 DEBUG Processing 479/729 atomic regions from SNP 143425 to 144025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,058 DEBUG Processing 79/681 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,135 DEBUG Processing 213/712 atomic regions from SNP 63779 to 64379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,153 DEBUG Processing 480/729 atomic regions from SNP 143725 to 144325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,246 DEBUG Processing 80/681 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,336 DEBUG Processing 214/712 atomic regions from SNP 64079 to 64679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,356 DEBUG Processing 481/729 atomic regions from SNP 144025 to 144625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,444 DEBUG Processing 81/681 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,538 DEBUG Processing 215/712 atomic regions from SNP 64379 to 64979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,555 DEBUG Processing 482/729 atomic regions from SNP 144325 to 144925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,632 DEBUG Processing 82/681 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,737 DEBUG Processing 216/712 atomic regions from SNP 64679 to 65279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,753 DEBUG Processing 483/729 atomic regions from SNP 144625 to 145225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,818 DEBUG Processing 83/681 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,940 DEBUG Processing 217/712 atomic regions from SNP 64979 to 65579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,956 DEBUG Processing 484/729 atomic regions from SNP 144925 to 145525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,037 DEBUG Processing 84/681 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,137 DEBUG Processing 218/712 atomic regions from SNP 65279 to 65879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,157 DEBUG Processing 485/729 atomic regions from SNP 145225 to 145825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,231 DEBUG Processing 85/681 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,333 DEBUG Processing 219/712 atomic regions from SNP 65579 to 66179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,359 DEBUG Processing 486/729 atomic regions from SNP 145525 to 146125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,418 DEBUG Processing 86/681 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,532 DEBUG Processing 220/712 atomic regions from SNP 65879 to 66479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,563 DEBUG Processing 487/729 atomic regions from SNP 145825 to 146425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,608 DEBUG Processing 87/681 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,735 DEBUG Processing 221/712 atomic regions from SNP 66179 to 66779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,770 DEBUG Processing 488/729 atomic regions from SNP 146125 to 146725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,802 DEBUG Processing 88/681 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,938 DEBUG Processing 222/712 atomic regions from SNP 66479 to 67079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,973 DEBUG Processing 489/729 atomic regions from SNP 146425 to 147025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,995 DEBUG Processing 89/681 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,143 DEBUG Processing 223/712 atomic regions from SNP 66779 to 67379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,178 DEBUG Processing 490/729 atomic regions from SNP 146725 to 147325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,200 DEBUG Processing 90/681 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,347 DEBUG Processing 224/712 atomic regions from SNP 67079 to 67679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,382 DEBUG Processing 491/729 atomic regions from SNP 147025 to 147625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,400 DEBUG Processing 91/681 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,404 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:55:00,405 DEBUG chr12: Signal quantile: 0.993. signal threshold: 19. Best RMSEA: 0.015 2025-01-31 09:55:00,551 DEBUG Processing 225/712 atomic regions from SNP 67379 to 67979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,588 DEBUG Processing 492/729 atomic regions from SNP 147325 to 147925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,597 DEBUG Processing 92/681 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,755 DEBUG Processing 226/712 atomic regions from SNP 67679 to 68279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,793 DEBUG Processing 93/681 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,796 DEBUG Processing 493/729 atomic regions from SNP 147625 to 148225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,958 DEBUG Processing 227/712 atomic regions from SNP 67979 to 68579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,990 DEBUG Processing 94/681 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,001 DEBUG Processing 494/729 atomic regions from SNP 147925 to 148525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,167 DEBUG Processing 228/712 atomic regions from SNP 68279 to 68879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,194 DEBUG Processing 95/681 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,209 DEBUG Processing 495/729 atomic regions from SNP 148225 to 148825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,368 DEBUG Processing 229/712 atomic regions from SNP 68579 to 69179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,394 DEBUG Processing 96/681 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,412 DEBUG Processing 496/729 atomic regions from SNP 148525 to 149125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,566 DEBUG Processing 230/712 atomic regions from SNP 68879 to 69479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,592 DEBUG Processing 97/681 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,614 DEBUG Processing 497/729 atomic regions from SNP 148825 to 149425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,763 DEBUG Processing 231/712 atomic regions from SNP 69179 to 69779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,787 DEBUG Processing 98/681 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,816 DEBUG Processing 498/729 atomic regions from SNP 149125 to 149725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,964 DEBUG Processing 232/712 atomic regions from SNP 69479 to 70079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,988 DEBUG Processing 99/681 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,021 DEBUG Processing 499/729 atomic regions from SNP 149425 to 150025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,162 DEBUG Processing 233/712 atomic regions from SNP 69779 to 70379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,192 DEBUG Processing 100/681 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,222 DEBUG Processing 500/729 atomic regions from SNP 149725 to 150325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,359 DEBUG Processing 234/712 atomic regions from SNP 70079 to 70679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,392 DEBUG Processing 101/681 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,406 DEBUG chr12 total SNP count: 200956 2025-01-31 09:55:02,407 DEBUG chr12 length: 120129022 2025-01-31 09:55:02,407 DEBUG ----------------------------------------- 2025-01-31 09:55:02,407 INFO Processing SNPs in chr12 2025-01-31 09:55:02,428 DEBUG Processing 501/729 atomic regions from SNP 150025 to 150625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,555 DEBUG Processing 235/712 atomic regions from SNP 70379 to 70979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,589 DEBUG Processing 102/681 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,603 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 200956)] 2025-01-31 09:55:02,632 DEBUG Processing 502/729 atomic regions from SNP 150325 to 150925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,737 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:02,751 DEBUG Processing 236/712 atomic regions from SNP 70679 to 71279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,792 DEBUG Processing 103/681 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,839 DEBUG Processing 503/729 atomic regions from SNP 150625 to 151225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,946 DEBUG Processing 237/712 atomic regions from SNP 70979 to 71579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,019 DEBUG Processing 104/681 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,060 DEBUG Processing 504/729 atomic regions from SNP 150925 to 151525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,140 DEBUG Processing 238/712 atomic regions from SNP 71279 to 71879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,248 DEBUG Processing 105/681 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,266 DEBUG Processing 505/729 atomic regions from SNP 151225 to 151825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,331 DEBUG Processing 239/712 atomic regions from SNP 71579 to 72179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,462 DEBUG Processing 106/681 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,468 DEBUG Processing 506/729 atomic regions from SNP 151525 to 152125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,525 DEBUG Processing 240/712 atomic regions from SNP 71879 to 72479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,672 DEBUG Processing 507/729 atomic regions from SNP 151825 to 152425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,689 DEBUG Processing 107/681 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,742 DEBUG Processing 241/712 atomic regions from SNP 72179 to 72779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,875 DEBUG Processing 508/729 atomic regions from SNP 152125 to 152725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,926 DEBUG Processing 108/681 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,947 DEBUG Processing 242/712 atomic regions from SNP 72479 to 73079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,085 DEBUG Processing 509/729 atomic regions from SNP 152425 to 153025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,151 DEBUG Processing 243/712 atomic regions from SNP 72779 to 73379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,158 DEBUG Processing 109/681 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,285 DEBUG Processing 510/729 atomic regions from SNP 152725 to 153325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,351 DEBUG Processing 244/712 atomic regions from SNP 73079 to 73679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,353 DEBUG Processing 110/681 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,483 DEBUG Processing 511/729 atomic regions from SNP 153025 to 153625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,549 DEBUG Processing 111/681 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,552 DEBUG Processing 245/712 atomic regions from SNP 73379 to 73979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,683 DEBUG Processing 512/729 atomic regions from SNP 153325 to 153925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,748 DEBUG Processing 112/681 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,753 DEBUG Processing 246/712 atomic regions from SNP 73679 to 74279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,880 DEBUG Processing 513/729 atomic regions from SNP 153625 to 154225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,948 DEBUG Processing 113/681 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,954 DEBUG Processing 247/712 atomic regions from SNP 73979 to 74579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,079 DEBUG Processing 514/729 atomic regions from SNP 153925 to 154525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,151 DEBUG Processing 114/681 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,156 DEBUG Processing 248/712 atomic regions from SNP 74279 to 74879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,277 DEBUG Processing 515/729 atomic regions from SNP 154225 to 154825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,358 DEBUG Processing 249/712 atomic regions from SNP 74579 to 75179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,379 DEBUG Processing 115/681 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,494 DEBUG Processing 516/729 atomic regions from SNP 154525 to 155125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,564 DEBUG Processing 250/712 atomic regions from SNP 74879 to 75479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,605 DEBUG Processing 116/681 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,694 DEBUG Processing 517/729 atomic regions from SNP 154825 to 155425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,769 DEBUG Processing 251/712 atomic regions from SNP 75179 to 75779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,829 DEBUG Processing 117/681 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,894 DEBUG Processing 518/729 atomic regions from SNP 155125 to 155725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,972 DEBUG Processing 252/712 atomic regions from SNP 75479 to 76079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,053 DEBUG Processing 118/681 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,094 DEBUG Processing 519/729 atomic regions from SNP 155425 to 156025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,168 DEBUG Processing 253/712 atomic regions from SNP 75779 to 76379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,259 DEBUG Processing 119/681 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,297 DEBUG Processing 520/729 atomic regions from SNP 155725 to 156325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,362 DEBUG Processing 254/712 atomic regions from SNP 76079 to 76679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,476 DEBUG Processing 120/681 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,499 DEBUG Processing 521/729 atomic regions from SNP 156025 to 156625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,557 DEBUG Processing 255/712 atomic regions from SNP 76379 to 76979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,706 DEBUG Processing 522/729 atomic regions from SNP 156325 to 156925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,708 DEBUG Processing 121/681 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,760 DEBUG Processing 256/712 atomic regions from SNP 76679 to 77279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,934 DEBUG Processing 122/681 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,942 DEBUG Processing 523/729 atomic regions from SNP 156625 to 157225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,972 DEBUG Processing 257/712 atomic regions from SNP 76979 to 77579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,154 DEBUG Processing 524/729 atomic regions from SNP 156925 to 157525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,166 DEBUG Processing 123/681 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,173 DEBUG Processing 258/712 atomic regions from SNP 77279 to 77879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,361 DEBUG Processing 525/729 atomic regions from SNP 157225 to 157825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,379 DEBUG Processing 259/712 atomic regions from SNP 77579 to 78179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,398 DEBUG Processing 124/681 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,574 DEBUG Processing 526/729 atomic regions from SNP 157525 to 158125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,587 DEBUG Processing 260/712 atomic regions from SNP 77879 to 78479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,637 DEBUG Processing 125/681 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,784 DEBUG Processing 527/729 atomic regions from SNP 157825 to 158425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,796 DEBUG Processing 261/712 atomic regions from SNP 78179 to 78779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,860 DEBUG Processing 126/681 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,990 DEBUG Processing 528/729 atomic regions from SNP 158125 to 158725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,995 DEBUG Processing 262/712 atomic regions from SNP 78479 to 79079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,055 DEBUG Processing 127/681 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,189 DEBUG Processing 529/729 atomic regions from SNP 158425 to 159025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,196 DEBUG Processing 263/712 atomic regions from SNP 78779 to 79379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,252 DEBUG Processing 128/681 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,391 DEBUG Processing 530/729 atomic regions from SNP 158725 to 159325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,398 DEBUG Processing 264/712 atomic regions from SNP 79079 to 79679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,451 DEBUG Processing 129/681 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,596 DEBUG Processing 531/729 atomic regions from SNP 159025 to 159625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,597 DEBUG Processing 265/712 atomic regions from SNP 79379 to 79979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,650 DEBUG Processing 130/681 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,803 DEBUG Processing 532/729 atomic regions from SNP 159325 to 159925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,823 DEBUG Processing 266/712 atomic regions from SNP 79679 to 80279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,852 DEBUG Processing 131/681 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,010 DEBUG Processing 533/729 atomic regions from SNP 159625 to 160225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,049 DEBUG Processing 267/712 atomic regions from SNP 79979 to 80579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,053 DEBUG Processing 132/681 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,219 DEBUG Processing 534/729 atomic regions from SNP 159925 to 160525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,259 DEBUG Processing 133/681 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,264 DEBUG Processing 268/712 atomic regions from SNP 80279 to 80879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,424 DEBUG Processing 535/729 atomic regions from SNP 160225 to 160825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,467 DEBUG Processing 134/681 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,470 DEBUG Processing 269/712 atomic regions from SNP 80579 to 81179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,632 DEBUG Processing 536/729 atomic regions from SNP 160525 to 161125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,665 DEBUG Processing 135/681 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,671 DEBUG Processing 270/712 atomic regions from SNP 80879 to 81479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,834 DEBUG Processing 537/729 atomic regions from SNP 160825 to 161425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,863 DEBUG Processing 136/681 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,885 DEBUG Processing 271/712 atomic regions from SNP 81179 to 81779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,036 DEBUG Processing 538/729 atomic regions from SNP 161125 to 161725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,064 DEBUG Processing 137/681 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,103 DEBUG Processing 272/712 atomic regions from SNP 81479 to 82079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,236 DEBUG Processing 539/729 atomic regions from SNP 161425 to 162025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,266 DEBUG Processing 138/681 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,308 DEBUG Processing 273/712 atomic regions from SNP 81779 to 82379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,439 DEBUG Processing 540/729 atomic regions from SNP 161725 to 162325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,468 DEBUG Processing 139/681 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,535 DEBUG Processing 274/712 atomic regions from SNP 82079 to 82679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,643 DEBUG Processing 541/729 atomic regions from SNP 162025 to 162625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,669 DEBUG Processing 140/681 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,763 DEBUG Processing 275/712 atomic regions from SNP 82379 to 82979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,848 DEBUG Processing 542/729 atomic regions from SNP 162325 to 162925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,871 DEBUG Processing 141/681 atomic regions from SNP 42140 to 42741 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,964 DEBUG Processing 276/712 atomic regions from SNP 82679 to 83279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,055 DEBUG Processing 543/729 atomic regions from SNP 162625 to 163225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,070 DEBUG Processing 142/681 atomic regions from SNP 42441 to 43042 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,159 DEBUG Processing 277/712 atomic regions from SNP 82979 to 83579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,259 DEBUG Processing 544/729 atomic regions from SNP 162925 to 163525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,269 DEBUG Processing 143/681 atomic regions from SNP 42742 to 43343 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,351 DEBUG Processing 278/712 atomic regions from SNP 83279 to 83879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,469 DEBUG Processing 545/729 atomic regions from SNP 163225 to 163825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,472 DEBUG Processing 144/681 atomic regions from SNP 43043 to 43644 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,551 DEBUG Processing 279/712 atomic regions from SNP 83579 to 84179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,667 DEBUG Processing 145/681 atomic regions from SNP 43344 to 43945 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,672 DEBUG Processing 546/729 atomic regions from SNP 163525 to 164125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,751 DEBUG Processing 280/712 atomic regions from SNP 83879 to 84479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,869 DEBUG Processing 146/681 atomic regions from SNP 43645 to 44246 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,877 DEBUG Processing 547/729 atomic regions from SNP 163825 to 164425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,949 DEBUG Processing 281/712 atomic regions from SNP 84179 to 84779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,069 DEBUG Processing 147/681 atomic regions from SNP 43946 to 44547 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,110 DEBUG Processing 548/729 atomic regions from SNP 164125 to 164725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,168 DEBUG Processing 282/712 atomic regions from SNP 84479 to 85079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,265 DEBUG Processing 148/681 atomic regions from SNP 44247 to 44848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,312 DEBUG Processing 549/729 atomic regions from SNP 164425 to 165025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,403 DEBUG Processing 283/712 atomic regions from SNP 84779 to 85379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,460 DEBUG Processing 149/681 atomic regions from SNP 44548 to 45149 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,513 DEBUG Processing 550/729 atomic regions from SNP 164725 to 165325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,628 DEBUG Processing 284/712 atomic regions from SNP 85079 to 85679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,659 DEBUG Processing 150/681 atomic regions from SNP 44849 to 45450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,714 DEBUG Processing 551/729 atomic regions from SNP 165025 to 165625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,845 DEBUG Processing 285/712 atomic regions from SNP 85379 to 85979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,858 DEBUG Processing 151/681 atomic regions from SNP 45150 to 45751 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,919 DEBUG Processing 552/729 atomic regions from SNP 165325 to 165925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,060 DEBUG Processing 286/712 atomic regions from SNP 85679 to 86279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,063 DEBUG Processing 152/681 atomic regions from SNP 45451 to 46052 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,122 DEBUG Processing 553/729 atomic regions from SNP 165625 to 166225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,276 DEBUG Processing 153/681 atomic regions from SNP 45752 to 46353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,285 DEBUG Processing 287/712 atomic regions from SNP 85979 to 86579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,348 DEBUG Processing 554/729 atomic regions from SNP 165925 to 166525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,487 DEBUG Processing 154/681 atomic regions from SNP 46053 to 46654 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,493 DEBUG Processing 288/712 atomic regions from SNP 86279 to 86879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,556 DEBUG Processing 555/729 atomic regions from SNP 166225 to 166825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,692 DEBUG Processing 289/712 atomic regions from SNP 86579 to 87179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,711 DEBUG Processing 155/681 atomic regions from SNP 46354 to 46955 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,758 DEBUG Processing 556/729 atomic regions from SNP 166525 to 167125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,891 DEBUG Processing 290/712 atomic regions from SNP 86879 to 87479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,924 DEBUG Processing 156/681 atomic regions from SNP 46655 to 47256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,966 DEBUG Processing 557/729 atomic regions from SNP 166825 to 167425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,091 DEBUG Processing 291/712 atomic regions from SNP 87179 to 87779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,155 DEBUG Processing 157/681 atomic regions from SNP 46956 to 47557 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,192 DEBUG Processing 558/729 atomic regions from SNP 167125 to 167725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,287 DEBUG Processing 292/712 atomic regions from SNP 87479 to 88079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,362 DEBUG Processing 158/681 atomic regions from SNP 47257 to 47858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,409 DEBUG Processing 559/729 atomic regions from SNP 167425 to 168025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,490 DEBUG Processing 293/712 atomic regions from SNP 87779 to 88379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,571 DEBUG Processing 159/681 atomic regions from SNP 47558 to 48159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,637 DEBUG Processing 560/729 atomic regions from SNP 167725 to 168325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,711 DEBUG Processing 294/712 atomic regions from SNP 88079 to 88679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,783 DEBUG Processing 160/681 atomic regions from SNP 47859 to 48460 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,858 DEBUG Processing 561/729 atomic regions from SNP 168025 to 168625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,933 DEBUG Processing 295/712 atomic regions from SNP 88379 to 88979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,006 DEBUG Processing 161/681 atomic regions from SNP 48160 to 48761 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,088 DEBUG Processing 562/729 atomic regions from SNP 168325 to 168925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,151 DEBUG Processing 296/712 atomic regions from SNP 88679 to 89279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,228 DEBUG Processing 162/681 atomic regions from SNP 48461 to 49062 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,297 DEBUG Processing 563/729 atomic regions from SNP 168625 to 169225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,353 DEBUG Processing 297/712 atomic regions from SNP 88979 to 89579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,427 DEBUG Processing 163/681 atomic regions from SNP 48762 to 49363 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,499 DEBUG Processing 564/729 atomic regions from SNP 168925 to 169525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,551 DEBUG Processing 298/712 atomic regions from SNP 89279 to 89879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,623 DEBUG Processing 164/681 atomic regions from SNP 49063 to 49664 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,699 DEBUG Processing 565/729 atomic regions from SNP 169225 to 169825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,762 DEBUG Processing 299/712 atomic regions from SNP 89579 to 90179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,833 DEBUG Processing 165/681 atomic regions from SNP 49364 to 49965 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,901 DEBUG Processing 566/729 atomic regions from SNP 169525 to 170125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,963 DEBUG Processing 300/712 atomic regions from SNP 89879 to 90479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,051 DEBUG Processing 166/681 atomic regions from SNP 49665 to 50266 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,102 DEBUG Processing 567/729 atomic regions from SNP 169825 to 170425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,163 DEBUG Processing 301/712 atomic regions from SNP 90179 to 90779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,255 DEBUG Processing 167/681 atomic regions from SNP 49966 to 50567 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,304 DEBUG Processing 568/729 atomic regions from SNP 170125 to 170725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,369 DEBUG Processing 302/712 atomic regions from SNP 90479 to 91079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,449 DEBUG Processing 168/681 atomic regions from SNP 50267 to 50868 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,507 DEBUG Processing 569/729 atomic regions from SNP 170425 to 171025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,592 DEBUG Processing 303/712 atomic regions from SNP 90779 to 91379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,643 DEBUG Processing 169/681 atomic regions from SNP 50568 to 51169 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,709 DEBUG Processing 570/729 atomic regions from SNP 170725 to 171325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,803 DEBUG Processing 304/712 atomic regions from SNP 91079 to 91679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,849 DEBUG Processing 170/681 atomic regions from SNP 50869 to 51470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,914 DEBUG Processing 571/729 atomic regions from SNP 171025 to 171625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,006 DEBUG Processing 305/712 atomic regions from SNP 91379 to 91979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,047 DEBUG Processing 171/681 atomic regions from SNP 51170 to 51771 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,113 DEBUG Processing 572/729 atomic regions from SNP 171325 to 171925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,224 DEBUG Processing 306/712 atomic regions from SNP 91679 to 92279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,264 DEBUG Processing 172/681 atomic regions from SNP 51471 to 52072 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,311 DEBUG Processing 573/729 atomic regions from SNP 171625 to 172225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,443 DEBUG Processing 307/712 atomic regions from SNP 91979 to 92579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,485 DEBUG Processing 173/681 atomic regions from SNP 51772 to 52373 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,512 DEBUG Processing 574/729 atomic regions from SNP 171925 to 172525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,641 DEBUG Processing 308/712 atomic regions from SNP 92279 to 92879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,693 DEBUG Processing 174/681 atomic regions from SNP 52073 to 52674 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,717 DEBUG Processing 575/729 atomic regions from SNP 172225 to 172825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,842 DEBUG Processing 309/712 atomic regions from SNP 92579 to 93179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,895 DEBUG Processing 175/681 atomic regions from SNP 52374 to 52975 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,938 DEBUG Processing 576/729 atomic regions from SNP 172525 to 173125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,037 DEBUG Processing 310/712 atomic regions from SNP 92879 to 93479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,094 DEBUG Processing 176/681 atomic regions from SNP 52675 to 53276 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,159 DEBUG Processing 577/729 atomic regions from SNP 172825 to 173425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,234 DEBUG Processing 311/712 atomic regions from SNP 93179 to 93779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,300 DEBUG Processing 177/681 atomic regions from SNP 52976 to 53577 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,372 DEBUG Processing 578/729 atomic regions from SNP 173125 to 173725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,432 DEBUG Processing 312/712 atomic regions from SNP 93479 to 94079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,528 DEBUG Processing 178/681 atomic regions from SNP 53277 to 53878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,594 DEBUG Processing 579/729 atomic regions from SNP 173425 to 174025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,628 DEBUG Processing 313/712 atomic regions from SNP 93779 to 94379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,760 DEBUG Processing 179/681 atomic regions from SNP 53578 to 54179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,810 DEBUG Processing 580/729 atomic regions from SNP 173725 to 174325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,829 DEBUG Processing 314/712 atomic regions from SNP 94079 to 94679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,990 DEBUG Processing 180/681 atomic regions from SNP 53879 to 54480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,019 DEBUG Processing 581/729 atomic regions from SNP 174025 to 174625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,032 DEBUG Processing 315/712 atomic regions from SNP 94379 to 94979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,202 DEBUG Processing 181/681 atomic regions from SNP 54180 to 54781 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,224 DEBUG Processing 582/729 atomic regions from SNP 174325 to 174925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,232 DEBUG Processing 316/712 atomic regions from SNP 94679 to 95279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,408 DEBUG Processing 182/681 atomic regions from SNP 54481 to 55082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,428 DEBUG Processing 583/729 atomic regions from SNP 174625 to 175225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,429 DEBUG Processing 317/712 atomic regions from SNP 94979 to 95579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,624 DEBUG Processing 183/681 atomic regions from SNP 54782 to 55383 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,628 DEBUG Processing 318/712 atomic regions from SNP 95279 to 95879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,638 DEBUG Processing 584/729 atomic regions from SNP 174925 to 175525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,837 DEBUG Processing 184/681 atomic regions from SNP 55083 to 55684 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,845 DEBUG Processing 319/712 atomic regions from SNP 95579 to 96179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,862 DEBUG Processing 585/729 atomic regions from SNP 175225 to 175825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,034 DEBUG Processing 185/681 atomic regions from SNP 55384 to 55985 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,070 DEBUG Processing 320/712 atomic regions from SNP 95879 to 96479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,080 DEBUG Processing 586/729 atomic regions from SNP 175525 to 176125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,232 DEBUG Processing 186/681 atomic regions from SNP 55685 to 56286 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,282 DEBUG Processing 587/729 atomic regions from SNP 175825 to 176425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,291 DEBUG Processing 321/712 atomic regions from SNP 96179 to 96779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,425 DEBUG Processing 187/681 atomic regions from SNP 55986 to 56587 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,504 DEBUG Processing 588/729 atomic regions from SNP 176125 to 176725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,508 DEBUG Processing 322/712 atomic regions from SNP 96479 to 97079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,641 DEBUG Processing 188/681 atomic regions from SNP 56287 to 56888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,730 DEBUG Processing 589/729 atomic regions from SNP 176425 to 177025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,737 DEBUG Processing 323/712 atomic regions from SNP 96779 to 97379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,862 DEBUG Processing 189/681 atomic regions from SNP 56588 to 57189 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,927 DEBUG Processing 590/729 atomic regions from SNP 176725 to 177325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,955 DEBUG Processing 324/712 atomic regions from SNP 97079 to 97679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,072 DEBUG Processing 190/681 atomic regions from SNP 56889 to 57490 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,126 DEBUG Processing 591/729 atomic regions from SNP 177025 to 177625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,148 DEBUG Processing 325/712 atomic regions from SNP 97379 to 97979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,283 DEBUG Processing 191/681 atomic regions from SNP 57190 to 57791 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,327 DEBUG Processing 592/729 atomic regions from SNP 177325 to 177925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,344 DEBUG Processing 326/712 atomic regions from SNP 97679 to 98279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,476 DEBUG Processing 192/681 atomic regions from SNP 57491 to 58092 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,526 DEBUG Processing 593/729 atomic regions from SNP 177625 to 178225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,569 DEBUG Processing 327/712 atomic regions from SNP 97979 to 98579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,666 DEBUG Processing 193/681 atomic regions from SNP 57792 to 58393 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,727 DEBUG Processing 594/729 atomic regions from SNP 177925 to 178525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,802 DEBUG Processing 328/712 atomic regions from SNP 98279 to 98879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,862 DEBUG Processing 194/681 atomic regions from SNP 58093 to 58694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,929 DEBUG Processing 595/729 atomic regions from SNP 178225 to 178825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,028 DEBUG Processing 329/712 atomic regions from SNP 98579 to 99179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,055 DEBUG Processing 195/681 atomic regions from SNP 58394 to 58995 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,128 DEBUG Processing 596/729 atomic regions from SNP 178525 to 179125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,244 DEBUG Processing 330/712 atomic regions from SNP 98879 to 99479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,246 DEBUG Processing 196/681 atomic regions from SNP 58695 to 59296 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,327 DEBUG Processing 597/729 atomic regions from SNP 178825 to 179425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,440 DEBUG Processing 197/681 atomic regions from SNP 58996 to 59597 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,451 DEBUG Processing 331/712 atomic regions from SNP 99179 to 99779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,538 DEBUG Processing 598/729 atomic regions from SNP 179125 to 179725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,636 DEBUG Processing 198/681 atomic regions from SNP 59297 to 59898 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,658 DEBUG Processing 332/712 atomic regions from SNP 99479 to 100079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,757 DEBUG Processing 599/729 atomic regions from SNP 179425 to 180025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,830 DEBUG Processing 199/681 atomic regions from SNP 59598 to 60199 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,879 DEBUG Processing 333/712 atomic regions from SNP 99779 to 100379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,968 DEBUG Processing 600/729 atomic regions from SNP 179725 to 180325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,029 DEBUG Processing 200/681 atomic regions from SNP 59899 to 60500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,103 DEBUG Processing 334/712 atomic regions from SNP 100079 to 100679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,186 DEBUG Processing 601/729 atomic regions from SNP 180025 to 180625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,249 DEBUG Processing 201/681 atomic regions from SNP 60200 to 60801 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,336 DEBUG Processing 335/712 atomic regions from SNP 100379 to 100979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,419 DEBUG Processing 602/729 atomic regions from SNP 180325 to 180925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,477 DEBUG Processing 202/681 atomic regions from SNP 60501 to 61102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,561 DEBUG Processing 336/712 atomic regions from SNP 100679 to 101279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,645 DEBUG Processing 603/729 atomic regions from SNP 180625 to 181225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,688 DEBUG Processing 203/681 atomic regions from SNP 60802 to 61403 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,780 DEBUG Processing 337/712 atomic regions from SNP 100979 to 101579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,850 DEBUG Processing 604/729 atomic regions from SNP 180925 to 181525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,885 DEBUG Processing 204/681 atomic regions from SNP 61103 to 61704 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,003 DEBUG Processing 338/712 atomic regions from SNP 101279 to 101879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,050 DEBUG Processing 605/729 atomic regions from SNP 181225 to 181825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,090 DEBUG Processing 205/681 atomic regions from SNP 61404 to 62005 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,224 DEBUG Processing 339/712 atomic regions from SNP 101579 to 102179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,247 DEBUG Processing 606/729 atomic regions from SNP 181525 to 182125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,310 DEBUG Processing 206/681 atomic regions from SNP 61705 to 62306 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,436 DEBUG Processing 340/712 atomic regions from SNP 101879 to 102479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,454 DEBUG Processing 607/729 atomic regions from SNP 181825 to 182425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,521 DEBUG Processing 207/681 atomic regions from SNP 62006 to 62607 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,647 DEBUG Processing 341/712 atomic regions from SNP 102179 to 102779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,655 DEBUG Processing 608/729 atomic regions from SNP 182125 to 182725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,710 DEBUG Processing 208/681 atomic regions from SNP 62307 to 62908 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,854 DEBUG Processing 609/729 atomic regions from SNP 182425 to 183025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,862 DEBUG Processing 342/712 atomic regions from SNP 102479 to 103079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,901 DEBUG Processing 209/681 atomic regions from SNP 62608 to 63209 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,048 DEBUG Processing 610/729 atomic regions from SNP 182725 to 183325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,071 DEBUG Processing 343/712 atomic regions from SNP 102779 to 103379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,089 DEBUG Processing 210/681 atomic regions from SNP 62909 to 63510 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,243 DEBUG Processing 611/729 atomic regions from SNP 183025 to 183625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,276 DEBUG Processing 211/681 atomic regions from SNP 63210 to 63811 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,284 DEBUG Processing 344/712 atomic regions from SNP 103079 to 103679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,439 DEBUG Processing 612/729 atomic regions from SNP 183325 to 183925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,469 DEBUG Processing 212/681 atomic regions from SNP 63511 to 64112 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,479 DEBUG Processing 345/712 atomic regions from SNP 103379 to 103979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,638 DEBUG Processing 613/729 atomic regions from SNP 183625 to 184225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,663 DEBUG Processing 213/681 atomic regions from SNP 63812 to 64413 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,681 DEBUG Processing 346/712 atomic regions from SNP 103679 to 104279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,839 DEBUG Processing 614/729 atomic regions from SNP 183925 to 184525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,855 DEBUG Processing 214/681 atomic regions from SNP 64113 to 64714 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,880 DEBUG Processing 347/712 atomic regions from SNP 103979 to 104579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,041 DEBUG Processing 615/729 atomic regions from SNP 184225 to 184825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,049 DEBUG Processing 215/681 atomic regions from SNP 64414 to 65015 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,078 DEBUG Processing 348/712 atomic regions from SNP 104279 to 104879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,243 DEBUG Processing 216/681 atomic regions from SNP 64715 to 65316 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,250 DEBUG Processing 616/729 atomic regions from SNP 184525 to 185125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,298 DEBUG Processing 349/712 atomic regions from SNP 104579 to 105179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,434 DEBUG Processing 217/681 atomic regions from SNP 65016 to 65617 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,448 DEBUG Processing 617/729 atomic regions from SNP 184825 to 185425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,515 DEBUG Processing 350/712 atomic regions from SNP 104879 to 105479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,542 DEBUG Segmenting atomic regions: 2025-01-31 09:55:26,621 DEBUG Processing 218/681 atomic regions from SNP 65317 to 65918 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,628 DEBUG Processing 1/668 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,643 DEBUG Processing 618/729 atomic regions from SNP 185125 to 185725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,704 DEBUG Processing 351/712 atomic regions from SNP 105179 to 105779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,817 DEBUG Processing 219/681 atomic regions from SNP 65618 to 66219 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,834 DEBUG Processing 2/668 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,839 DEBUG Processing 619/729 atomic regions from SNP 185425 to 186025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,896 DEBUG Processing 352/712 atomic regions from SNP 105479 to 106079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,020 DEBUG Processing 220/681 atomic regions from SNP 65919 to 66520 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,046 DEBUG Processing 3/668 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,056 DEBUG Processing 620/729 atomic regions from SNP 185725 to 186325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,088 DEBUG Processing 353/712 atomic regions from SNP 105779 to 106379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,235 DEBUG Processing 221/681 atomic regions from SNP 66220 to 66821 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,264 DEBUG Processing 4/668 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,288 DEBUG Processing 354/712 atomic regions from SNP 106079 to 106679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,294 DEBUG Processing 621/729 atomic regions from SNP 186025 to 186625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,460 DEBUG Processing 222/681 atomic regions from SNP 66521 to 67122 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,478 DEBUG Processing 5/668 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,487 DEBUG Processing 355/712 atomic regions from SNP 106379 to 106979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,528 DEBUG Processing 622/729 atomic regions from SNP 186325 to 186925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,675 DEBUG Processing 223/681 atomic regions from SNP 66822 to 67423 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,686 DEBUG Processing 356/712 atomic regions from SNP 106679 to 107279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,698 DEBUG Processing 6/668 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,743 DEBUG Processing 623/729 atomic regions from SNP 186625 to 187225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,884 DEBUG Processing 224/681 atomic regions from SNP 67123 to 67724 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,886 DEBUG Processing 357/712 atomic regions from SNP 106979 to 107579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,918 DEBUG Processing 7/668 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,959 DEBUG Processing 624/729 atomic regions from SNP 186925 to 187525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,083 DEBUG Processing 358/712 atomic regions from SNP 107279 to 107879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,083 DEBUG Processing 225/681 atomic regions from SNP 67424 to 68025 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,132 DEBUG Processing 8/668 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,180 DEBUG Processing 625/729 atomic regions from SNP 187225 to 187825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,279 DEBUG Processing 226/681 atomic regions from SNP 67725 to 68326 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,280 DEBUG Processing 359/712 atomic regions from SNP 107579 to 108179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,326 DEBUG Processing 9/668 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,379 DEBUG Processing 626/729 atomic regions from SNP 187525 to 188125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,473 DEBUG Processing 227/681 atomic regions from SNP 68026 to 68627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,476 DEBUG Processing 360/712 atomic regions from SNP 107879 to 108479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,531 DEBUG Processing 10/668 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,608 DEBUG Processing 627/729 atomic regions from SNP 187825 to 188425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,667 DEBUG Processing 228/681 atomic regions from SNP 68327 to 68928 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,673 DEBUG Processing 361/712 atomic regions from SNP 108179 to 108779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,752 DEBUG Processing 11/668 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,855 DEBUG Processing 628/729 atomic regions from SNP 188125 to 188725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,877 DEBUG Processing 229/681 atomic regions from SNP 68628 to 69229 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,884 DEBUG Processing 362/712 atomic regions from SNP 108479 to 109079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,979 DEBUG Processing 12/668 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,074 DEBUG Processing 230/681 atomic regions from SNP 68929 to 69530 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,083 DEBUG Processing 363/712 atomic regions from SNP 108779 to 109379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,088 DEBUG Processing 629/729 atomic regions from SNP 188425 to 189025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,173 DEBUG Processing 13/668 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,271 DEBUG Processing 231/681 atomic regions from SNP 69230 to 69831 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,287 DEBUG Processing 364/712 atomic regions from SNP 109079 to 109679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,316 DEBUG Processing 630/729 atomic regions from SNP 188725 to 189325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,361 DEBUG Processing 14/668 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,466 DEBUG Processing 232/681 atomic regions from SNP 69531 to 70132 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,488 DEBUG Processing 365/712 atomic regions from SNP 109379 to 109979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,548 DEBUG Processing 15/668 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,549 DEBUG Processing 631/729 atomic regions from SNP 189025 to 189625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,659 DEBUG Processing 233/681 atomic regions from SNP 69832 to 70433 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,684 DEBUG Processing 366/712 atomic regions from SNP 109679 to 110279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,736 DEBUG Processing 16/668 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,786 DEBUG Processing 632/729 atomic regions from SNP 189325 to 189925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,879 DEBUG Processing 367/712 atomic regions from SNP 109979 to 110579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,880 DEBUG Processing 234/681 atomic regions from SNP 70133 to 70734 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,923 DEBUG Processing 17/668 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,026 DEBUG Processing 633/729 atomic regions from SNP 189625 to 190225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,080 DEBUG Processing 368/712 atomic regions from SNP 110279 to 110879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,113 DEBUG Processing 18/668 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,113 DEBUG Processing 235/681 atomic regions from SNP 70434 to 71035 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,260 DEBUG Processing 634/729 atomic regions from SNP 189925 to 190525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,278 DEBUG Processing 369/712 atomic regions from SNP 110579 to 111179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,301 DEBUG Processing 19/668 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,341 DEBUG Processing 236/681 atomic regions from SNP 70735 to 71336 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,475 DEBUG Processing 370/712 atomic regions from SNP 110879 to 111479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,491 DEBUG Processing 20/668 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,495 DEBUG Processing 635/729 atomic regions from SNP 190225 to 190825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,562 DEBUG Processing 237/681 atomic regions from SNP 71036 to 71637 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,672 DEBUG Processing 371/712 atomic regions from SNP 111179 to 111779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,680 DEBUG Processing 21/668 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,730 DEBUG Processing 636/729 atomic regions from SNP 190525 to 191125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,758 DEBUG Processing 238/681 atomic regions from SNP 71337 to 71938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,869 DEBUG Processing 22/668 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,869 DEBUG Processing 372/712 atomic regions from SNP 111479 to 112079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,953 DEBUG Processing 239/681 atomic regions from SNP 71638 to 72239 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,966 DEBUG Processing 637/729 atomic regions from SNP 190825 to 191425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,057 DEBUG Processing 23/668 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,062 DEBUG Processing 373/712 atomic regions from SNP 111779 to 112379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,147 DEBUG Processing 240/681 atomic regions from SNP 71939 to 72540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,197 DEBUG Processing 638/729 atomic regions from SNP 191125 to 191725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,242 DEBUG Processing 24/668 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,255 DEBUG Processing 374/712 atomic regions from SNP 112079 to 112679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,340 DEBUG Processing 241/681 atomic regions from SNP 72240 to 72841 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,396 DEBUG Processing 639/729 atomic regions from SNP 191425 to 192025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,429 DEBUG Processing 25/668 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,450 DEBUG Processing 375/712 atomic regions from SNP 112379 to 112979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,535 DEBUG Processing 242/681 atomic regions from SNP 72541 to 73142 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,596 DEBUG Processing 640/729 atomic regions from SNP 191725 to 192325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,614 DEBUG Processing 26/668 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,644 DEBUG Processing 376/712 atomic regions from SNP 112679 to 113279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,745 DEBUG Processing 243/681 atomic regions from SNP 72842 to 73443 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,806 DEBUG Processing 641/729 atomic regions from SNP 192025 to 192625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,818 DEBUG Processing 27/668 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,844 DEBUG Processing 377/712 atomic regions from SNP 112979 to 113579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,981 DEBUG Processing 244/681 atomic regions from SNP 73143 to 73744 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,047 DEBUG Processing 28/668 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,048 DEBUG Processing 642/729 atomic regions from SNP 192325 to 192925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,058 DEBUG Processing 378/712 atomic regions from SNP 113279 to 113879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,200 DEBUG Processing 245/681 atomic regions from SNP 73444 to 74045 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,260 DEBUG Processing 29/668 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,275 DEBUG Processing 379/712 atomic regions from SNP 113579 to 114179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,285 DEBUG Processing 643/729 atomic regions from SNP 192625 to 193225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,417 DEBUG Processing 246/681 atomic regions from SNP 73745 to 74346 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,449 DEBUG Processing 30/668 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,469 DEBUG Processing 380/712 atomic regions from SNP 113879 to 114479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,508 DEBUG Processing 644/729 atomic regions from SNP 192925 to 193525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,610 DEBUG Processing 247/681 atomic regions from SNP 74046 to 74647 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,636 DEBUG Processing 31/668 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,664 DEBUG Processing 381/712 atomic regions from SNP 114179 to 114779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,740 DEBUG Processing 645/729 atomic regions from SNP 193225 to 193825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,815 DEBUG Processing 248/681 atomic regions from SNP 74347 to 74948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,852 DEBUG Processing 32/668 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,865 DEBUG Processing 382/712 atomic regions from SNP 114479 to 115079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,970 DEBUG Processing 646/729 atomic regions from SNP 193525 to 194125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,032 DEBUG Processing 249/681 atomic regions from SNP 74648 to 75249 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,060 DEBUG Processing 383/712 atomic regions from SNP 114779 to 115379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,067 DEBUG Processing 33/668 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,201 DEBUG Processing 647/729 atomic regions from SNP 193825 to 194425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,238 DEBUG Processing 250/681 atomic regions from SNP 74949 to 75550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,260 DEBUG Processing 384/712 atomic regions from SNP 115079 to 115679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,288 DEBUG Processing 34/668 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,435 DEBUG Processing 648/729 atomic regions from SNP 194125 to 194725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,458 DEBUG Processing 251/681 atomic regions from SNP 75250 to 75851 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,459 DEBUG Processing 385/712 atomic regions from SNP 115379 to 115979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,491 DEBUG Processing 35/668 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,672 DEBUG Processing 649/729 atomic regions from SNP 194425 to 195025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,690 DEBUG Processing 386/712 atomic regions from SNP 115679 to 116279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,693 DEBUG Processing 252/681 atomic regions from SNP 75551 to 76152 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,708 DEBUG Processing 36/668 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,903 DEBUG Processing 650/729 atomic regions from SNP 194725 to 195325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,904 DEBUG Processing 253/681 atomic regions from SNP 75852 to 76453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,906 DEBUG Processing 37/668 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,911 DEBUG Processing 387/712 atomic regions from SNP 115979 to 116579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,124 DEBUG Processing 38/668 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,130 DEBUG Processing 254/681 atomic regions from SNP 76153 to 76754 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,156 DEBUG Processing 651/729 atomic regions from SNP 195025 to 195625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,158 DEBUG Processing 388/712 atomic regions from SNP 116279 to 116879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,332 DEBUG Processing 39/668 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,345 DEBUG Processing 255/681 atomic regions from SNP 76454 to 77055 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,372 DEBUG Processing 652/729 atomic regions from SNP 195325 to 195925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,399 DEBUG Processing 389/712 atomic regions from SNP 116579 to 117179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,522 DEBUG Processing 40/668 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,558 DEBUG Processing 256/681 atomic regions from SNP 76755 to 77356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,580 DEBUG Processing 653/729 atomic regions from SNP 195625 to 196225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,624 DEBUG Processing 390/712 atomic regions from SNP 116879 to 117479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,713 DEBUG Processing 41/668 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,777 DEBUG Processing 257/681 atomic regions from SNP 77056 to 77657 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,784 DEBUG Processing 654/729 atomic regions from SNP 195925 to 196525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,842 DEBUG Processing 391/712 atomic regions from SNP 117179 to 117779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,906 DEBUG Processing 42/668 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,980 DEBUG Processing 258/681 atomic regions from SNP 77357 to 77958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,983 DEBUG Processing 655/729 atomic regions from SNP 196225 to 196825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,064 DEBUG Processing 392/712 atomic regions from SNP 117479 to 118079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,097 DEBUG Processing 43/668 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,186 DEBUG Processing 656/729 atomic regions from SNP 196525 to 197125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,206 DEBUG Processing 259/681 atomic regions from SNP 77658 to 78259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,288 DEBUG Processing 44/668 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,295 DEBUG Processing 393/712 atomic regions from SNP 117779 to 118379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,394 DEBUG Processing 657/729 atomic regions from SNP 196825 to 197425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,430 DEBUG Processing 260/681 atomic regions from SNP 77959 to 78559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,483 DEBUG Processing 45/668 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,540 DEBUG Processing 394/712 atomic regions from SNP 118079 to 118679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,600 DEBUG Processing 658/729 atomic regions from SNP 197125 to 197725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,630 DEBUG Processing 261/681 atomic regions from SNP 78259 to 78859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,673 DEBUG Processing 46/668 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,723 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:55:35,765 DEBUG Processing 395/712 atomic regions from SNP 118379 to 118979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,803 DEBUG Processing 659/729 atomic regions from SNP 197425 to 198025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,825 DEBUG Processing 262/681 atomic regions from SNP 78559 to 79159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,862 DEBUG Processing 47/668 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,996 DEBUG Processing 396/712 atomic regions from SNP 118679 to 119279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,015 DEBUG Processing 660/729 atomic regions from SNP 197725 to 198325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,033 DEBUG Processing 263/681 atomic regions from SNP 78859 to 79459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,054 DEBUG Processing 48/668 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,227 DEBUG Processing 661/729 atomic regions from SNP 198025 to 198625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,235 DEBUG Processing 397/712 atomic regions from SNP 118979 to 119579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,242 DEBUG Processing 264/681 atomic regions from SNP 79159 to 79759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,249 DEBUG Processing 49/668 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,431 DEBUG Processing 662/729 atomic regions from SNP 198325 to 198925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,439 DEBUG Processing 50/668 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,443 DEBUG Processing 265/681 atomic regions from SNP 79459 to 80059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,457 DEBUG Processing 398/712 atomic regions from SNP 119279 to 119879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,628 DEBUG Processing 51/668 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,637 DEBUG Processing 663/729 atomic regions from SNP 198625 to 199225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,645 DEBUG Processing 266/681 atomic regions from SNP 79759 to 80359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,687 DEBUG Processing 399/712 atomic regions from SNP 119579 to 120179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,819 DEBUG Processing 52/668 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,847 DEBUG Processing 664/729 atomic regions from SNP 198925 to 199525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,859 DEBUG Processing 267/681 atomic regions from SNP 80059 to 80659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,917 DEBUG Processing 400/712 atomic regions from SNP 119879 to 120479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,010 DEBUG Processing 53/668 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,051 DEBUG Processing 665/729 atomic regions from SNP 199225 to 199825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,088 DEBUG Processing 268/681 atomic regions from SNP 80359 to 80959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,127 DEBUG Processing 401/712 atomic regions from SNP 120179 to 120779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,199 DEBUG Processing 54/668 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,272 DEBUG Processing 666/729 atomic regions from SNP 199525 to 200125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,318 DEBUG Processing 269/681 atomic regions from SNP 80659 to 81259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,325 DEBUG Processing 402/712 atomic regions from SNP 120479 to 121079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,390 DEBUG Processing 55/668 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,495 DEBUG Processing 667/729 atomic regions from SNP 199825 to 200425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,526 DEBUG Processing 403/712 atomic regions from SNP 120779 to 121379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,555 DEBUG Processing 270/681 atomic regions from SNP 80959 to 81559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,579 DEBUG Processing 56/668 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,724 DEBUG Processing 668/729 atomic regions from SNP 200125 to 200725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,726 DEBUG Processing 404/712 atomic regions from SNP 121079 to 121679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,770 DEBUG Processing 57/668 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,794 DEBUG Processing 271/681 atomic regions from SNP 81259 to 81859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,928 DEBUG Processing 405/712 atomic regions from SNP 121379 to 121979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,945 DEBUG Processing 669/729 atomic regions from SNP 200425 to 201025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,960 DEBUG Processing 58/668 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,029 DEBUG Processing 272/681 atomic regions from SNP 81559 to 82159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,124 DEBUG Processing 406/712 atomic regions from SNP 121679 to 122279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,147 DEBUG Processing 59/668 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,175 DEBUG Processing 670/729 atomic regions from SNP 200725 to 201325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,258 DEBUG Processing 273/681 atomic regions from SNP 81859 to 82459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,335 DEBUG Processing 60/668 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,335 DEBUG Processing 407/712 atomic regions from SNP 121979 to 122579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,399 DEBUG Processing 671/729 atomic regions from SNP 201025 to 201625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,478 DEBUG Processing 274/681 atomic regions from SNP 82159 to 82759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,525 DEBUG Processing 61/668 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,548 DEBUG Processing 408/712 atomic regions from SNP 122279 to 122879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,615 DEBUG Processing 672/729 atomic regions from SNP 201325 to 201925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,692 DEBUG Processing 275/681 atomic regions from SNP 82459 to 83059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,713 DEBUG Processing 62/668 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,756 DEBUG Processing 409/712 atomic regions from SNP 122579 to 123179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,816 DEBUG Processing 673/729 atomic regions from SNP 201625 to 202225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,899 DEBUG Processing 276/681 atomic regions from SNP 82759 to 83359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,901 DEBUG Processing 63/668 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,983 DEBUG Processing 410/712 atomic regions from SNP 122879 to 123479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,018 DEBUG Processing 674/729 atomic regions from SNP 201925 to 202525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,087 DEBUG Processing 64/668 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,094 DEBUG Processing 277/681 atomic regions from SNP 83059 to 83659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,189 DEBUG Processing 411/712 atomic regions from SNP 123179 to 123779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,247 DEBUG Processing 675/729 atomic regions from SNP 202225 to 202825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,272 DEBUG Processing 65/668 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,289 DEBUG Processing 278/681 atomic regions from SNP 83359 to 83959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,384 DEBUG Processing 412/712 atomic regions from SNP 123479 to 124079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,458 DEBUG Processing 66/668 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,459 DEBUG Processing 676/729 atomic regions from SNP 202525 to 203125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,486 DEBUG Processing 279/681 atomic regions from SNP 83659 to 84259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,595 DEBUG Processing 413/712 atomic regions from SNP 123779 to 124379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,644 DEBUG Processing 67/668 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,661 DEBUG Processing 677/729 atomic regions from SNP 202825 to 203425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,683 DEBUG Processing 280/681 atomic regions from SNP 83959 to 84559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,820 DEBUG Processing 414/712 atomic regions from SNP 124079 to 124679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,830 DEBUG Processing 68/668 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,863 DEBUG Processing 678/729 atomic regions from SNP 203125 to 203725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,913 DEBUG Processing 281/681 atomic regions from SNP 84259 to 84859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,016 DEBUG Processing 69/668 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,027 DEBUG Processing 415/712 atomic regions from SNP 124379 to 124979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,066 DEBUG Processing 679/729 atomic regions from SNP 203425 to 204025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,123 DEBUG Processing 282/681 atomic regions from SNP 84559 to 85159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,205 DEBUG Processing 70/668 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,228 DEBUG Processing 416/712 atomic regions from SNP 124679 to 125279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,271 DEBUG Processing 680/729 atomic regions from SNP 203725 to 204325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,322 DEBUG Processing 283/681 atomic regions from SNP 84859 to 85459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,391 DEBUG Processing 71/668 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,434 DEBUG Processing 417/712 atomic regions from SNP 124979 to 125579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,478 DEBUG Processing 681/729 atomic regions from SNP 204025 to 204625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,540 DEBUG Processing 284/681 atomic regions from SNP 85159 to 85759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,585 DEBUG Processing 72/668 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,640 DEBUG Processing 418/712 atomic regions from SNP 125279 to 125879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,679 DEBUG Processing 682/729 atomic regions from SNP 204325 to 204925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,760 DEBUG Processing 285/681 atomic regions from SNP 85459 to 86059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,779 DEBUG Processing 73/668 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,840 DEBUG Processing 419/712 atomic regions from SNP 125579 to 126179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,881 DEBUG Processing 683/729 atomic regions from SNP 204625 to 205225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,991 DEBUG Processing 74/668 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,993 DEBUG Processing 286/681 atomic regions from SNP 85759 to 86359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,044 DEBUG Processing 420/712 atomic regions from SNP 125879 to 126479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,096 DEBUG Processing 684/729 atomic regions from SNP 204925 to 205525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,198 DEBUG Processing 75/668 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,214 DEBUG Processing 287/681 atomic regions from SNP 86059 to 86659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,256 DEBUG Processing 421/712 atomic regions from SNP 126179 to 126779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,307 DEBUG Processing 685/729 atomic regions from SNP 205225 to 205825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,410 DEBUG Processing 76/668 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,424 DEBUG Processing 288/681 atomic regions from SNP 86359 to 86959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,466 DEBUG Processing 422/712 atomic regions from SNP 126479 to 127079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,509 DEBUG Processing 686/729 atomic regions from SNP 205525 to 206125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,600 DEBUG Processing 77/668 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,622 DEBUG Processing 289/681 atomic regions from SNP 86659 to 87259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,685 DEBUG Processing 423/712 atomic regions from SNP 126779 to 127379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,715 DEBUG Processing 687/729 atomic regions from SNP 205825 to 206425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,789 DEBUG Processing 78/668 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,832 DEBUG Processing 290/681 atomic regions from SNP 86959 to 87559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,913 DEBUG Processing 424/712 atomic regions from SNP 127079 to 127679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,927 DEBUG Processing 688/729 atomic regions from SNP 206125 to 206725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,983 DEBUG Processing 79/668 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,030 DEBUG Processing 291/681 atomic regions from SNP 87259 to 87859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,121 DEBUG Processing 425/712 atomic regions from SNP 127379 to 127979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,131 DEBUG Processing 689/729 atomic regions from SNP 206425 to 207025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,172 DEBUG Processing 80/668 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,242 DEBUG Processing 292/681 atomic regions from SNP 87559 to 88159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,332 DEBUG Processing 690/729 atomic regions from SNP 206725 to 207325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,347 DEBUG Processing 426/712 atomic regions from SNP 127679 to 128279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,367 DEBUG Processing 81/668 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,450 DEBUG Processing 293/681 atomic regions from SNP 87859 to 88459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,528 DEBUG Processing 691/729 atomic regions from SNP 207025 to 207625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,570 DEBUG Processing 427/712 atomic regions from SNP 127979 to 128579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,574 DEBUG Processing 82/668 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,650 DEBUG Processing 294/681 atomic regions from SNP 88159 to 88759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,741 DEBUG Processing 692/729 atomic regions from SNP 207325 to 207925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,791 DEBUG Processing 83/668 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,805 DEBUG Processing 428/712 atomic regions from SNP 128279 to 128879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,847 DEBUG Processing 295/681 atomic regions from SNP 88459 to 89059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,940 DEBUG Processing 693/729 atomic regions from SNP 207625 to 208225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,993 DEBUG Processing 84/668 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,030 DEBUG Processing 429/712 atomic regions from SNP 128579 to 129179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,041 DEBUG Processing 296/681 atomic regions from SNP 88759 to 89359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,137 DEBUG Processing 694/729 atomic regions from SNP 207925 to 208525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,203 DEBUG Processing 85/668 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,239 DEBUG Processing 297/681 atomic regions from SNP 89059 to 89659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,253 DEBUG Processing 430/712 atomic regions from SNP 128879 to 129479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,355 DEBUG Processing 695/729 atomic regions from SNP 208225 to 208825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,411 DEBUG Processing 86/668 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,434 DEBUG Processing 298/681 atomic regions from SNP 89359 to 89959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,473 DEBUG Processing 431/712 atomic regions from SNP 129179 to 129779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,554 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:55:43,560 DEBUG Processing 696/729 atomic regions from SNP 208525 to 209125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,627 DEBUG Processing 87/668 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,633 DEBUG Processing 299/681 atomic regions from SNP 89659 to 90259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,677 DEBUG Processing 432/712 atomic regions from SNP 129479 to 130079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,758 DEBUG Processing 697/729 atomic regions from SNP 208825 to 209425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,835 DEBUG Processing 88/668 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,839 DEBUG Processing 300/681 atomic regions from SNP 89959 to 90559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,895 DEBUG Processing 433/712 atomic regions from SNP 129779 to 130379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,968 DEBUG Processing 698/729 atomic regions from SNP 209125 to 209725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,025 DEBUG Processing 89/668 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,045 DEBUG Processing 301/681 atomic regions from SNP 90259 to 90859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,124 DEBUG Processing 434/712 atomic regions from SNP 130079 to 130679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,198 DEBUG Processing 699/729 atomic regions from SNP 209425 to 210025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,227 DEBUG Processing 90/668 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,270 DEBUG Processing 302/681 atomic regions from SNP 90559 to 91159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,336 DEBUG Processing 435/712 atomic regions from SNP 130379 to 130979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,417 DEBUG Processing 91/668 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,422 DEBUG Processing 700/729 atomic regions from SNP 209725 to 210325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,499 DEBUG Processing 303/681 atomic regions from SNP 90859 to 91459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,542 DEBUG Processing 436/712 atomic regions from SNP 130679 to 131279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,607 DEBUG Processing 92/668 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,653 DEBUG Processing 701/729 atomic regions from SNP 210025 to 210625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,732 DEBUG Processing 304/681 atomic regions from SNP 91159 to 91759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,742 DEBUG Processing 437/712 atomic regions from SNP 130979 to 131579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,795 DEBUG Processing 93/668 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,875 DEBUG Processing 702/729 atomic regions from SNP 210325 to 210925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,942 DEBUG Processing 438/712 atomic regions from SNP 131279 to 131879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,962 DEBUG Processing 305/681 atomic regions from SNP 91459 to 92059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,985 DEBUG Processing 94/668 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,084 DEBUG Processing 703/729 atomic regions from SNP 210625 to 211225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,138 DEBUG Processing 439/712 atomic regions from SNP 131579 to 132179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,172 DEBUG Processing 95/668 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,190 DEBUG Processing 306/681 atomic regions from SNP 91759 to 92359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,305 DEBUG Processing 704/729 atomic regions from SNP 210925 to 211525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,356 DEBUG Processing 96/668 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,361 DEBUG Processing 440/712 atomic regions from SNP 131879 to 132479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,416 DEBUG Processing 307/681 atomic regions from SNP 92059 to 92659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,541 DEBUG Processing 705/729 atomic regions from SNP 211225 to 211825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,549 DEBUG Processing 97/668 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,584 DEBUG Processing 441/712 atomic regions from SNP 132179 to 132779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,652 DEBUG Processing 308/681 atomic regions from SNP 92359 to 92959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,754 DEBUG Processing 706/729 atomic regions from SNP 211525 to 212125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,757 DEBUG Processing 98/668 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,808 DEBUG Processing 442/712 atomic regions from SNP 132479 to 133079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,881 DEBUG Processing 309/681 atomic regions from SNP 92659 to 93259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,962 DEBUG Processing 99/668 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,976 DEBUG Processing 707/729 atomic regions from SNP 211825 to 212425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,035 DEBUG Processing 443/712 atomic regions from SNP 132779 to 133379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,114 DEBUG Processing 310/681 atomic regions from SNP 92959 to 93559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,154 DEBUG Processing 100/668 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,205 DEBUG Processing 708/729 atomic regions from SNP 212125 to 212725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,263 DEBUG Processing 444/712 atomic regions from SNP 133079 to 133679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,333 DEBUG Processing 311/681 atomic regions from SNP 93259 to 93859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,346 DEBUG Processing 101/668 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,424 DEBUG Processing 709/729 atomic regions from SNP 212425 to 213025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,491 DEBUG Processing 445/712 atomic regions from SNP 133379 to 133979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,533 DEBUG Processing 102/668 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,538 DEBUG Processing 312/681 atomic regions from SNP 93559 to 94159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,648 DEBUG Processing 710/729 atomic regions from SNP 212725 to 213325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,722 DEBUG Processing 446/712 atomic regions from SNP 133679 to 134279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,735 DEBUG Processing 313/681 atomic regions from SNP 93859 to 94459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,744 DEBUG Processing 103/668 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,864 DEBUG Processing 711/729 atomic regions from SNP 213025 to 213625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,929 DEBUG Processing 314/681 atomic regions from SNP 94159 to 94759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,942 DEBUG Processing 447/712 atomic regions from SNP 133979 to 134579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,968 DEBUG Processing 104/668 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,085 DEBUG Processing 712/729 atomic regions from SNP 213325 to 213925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,127 DEBUG Processing 315/681 atomic regions from SNP 94459 to 95059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,147 DEBUG Processing 448/712 atomic regions from SNP 134279 to 134879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,186 DEBUG Processing 105/668 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,318 DEBUG Processing 713/729 atomic regions from SNP 213625 to 214225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,333 DEBUG Processing 316/681 atomic regions from SNP 94759 to 95359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,357 DEBUG Processing 449/712 atomic regions from SNP 134579 to 135179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,402 DEBUG Processing 106/668 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,538 DEBUG Processing 714/729 atomic regions from SNP 213925 to 214525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,538 DEBUG Processing 317/681 atomic regions from SNP 95059 to 95659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,577 DEBUG Processing 450/712 atomic regions from SNP 134879 to 135479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,614 DEBUG Processing 107/668 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,740 DEBUG Processing 318/681 atomic regions from SNP 95359 to 95959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,777 DEBUG Processing 715/729 atomic regions from SNP 214225 to 214825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,798 DEBUG Processing 451/712 atomic regions from SNP 135179 to 135779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,812 DEBUG Processing 108/668 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,947 DEBUG Processing 319/681 atomic regions from SNP 95659 to 96259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,008 DEBUG Processing 109/668 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,008 DEBUG Processing 452/712 atomic regions from SNP 135479 to 136079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,025 DEBUG Processing 716/729 atomic regions from SNP 214525 to 215125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,144 DEBUG Processing 320/681 atomic regions from SNP 95959 to 96559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,206 DEBUG Processing 110/668 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,222 DEBUG Processing 453/712 atomic regions from SNP 135779 to 136379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,251 DEBUG Processing 717/729 atomic regions from SNP 214825 to 215425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,342 DEBUG Processing 321/681 atomic regions from SNP 96259 to 96859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,402 DEBUG Processing 111/668 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,456 DEBUG Processing 454/712 atomic regions from SNP 136079 to 136679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,475 DEBUG Processing 718/729 atomic regions from SNP 215125 to 215725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,535 DEBUG Processing 322/681 atomic regions from SNP 96559 to 97159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,593 DEBUG Processing 112/668 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,673 DEBUG Processing 455/712 atomic regions from SNP 136379 to 136979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,695 DEBUG Processing 719/729 atomic regions from SNP 215425 to 216025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,725 DEBUG Processing 323/681 atomic regions from SNP 96859 to 97459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,780 DEBUG Processing 113/668 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,889 DEBUG Processing 456/712 atomic regions from SNP 136679 to 137279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,895 DEBUG Processing 720/729 atomic regions from SNP 215725 to 216325 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,921 DEBUG Processing 324/681 atomic regions from SNP 97159 to 97759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,969 DEBUG Processing 114/668 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,108 DEBUG Processing 457/712 atomic regions from SNP 136979 to 137579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,111 DEBUG Processing 721/729 atomic regions from SNP 216025 to 216625 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,146 DEBUG Processing 325/681 atomic regions from SNP 97459 to 98059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,173 DEBUG Processing 115/668 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,321 DEBUG Processing 458/712 atomic regions from SNP 137279 to 137879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,322 DEBUG Processing 722/729 atomic regions from SNP 216325 to 216925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,367 DEBUG Processing 116/668 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,388 DEBUG Processing 326/681 atomic regions from SNP 97759 to 98359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,528 DEBUG Processing 459/712 atomic regions from SNP 137579 to 138179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,540 DEBUG Processing 723/729 atomic regions from SNP 216625 to 217225 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,566 DEBUG Processing 117/668 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,620 DEBUG Processing 327/681 atomic regions from SNP 98059 to 98659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,722 DEBUG Processing 460/712 atomic regions from SNP 137879 to 138479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,752 DEBUG Processing 118/668 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,761 DEBUG Processing 724/729 atomic regions from SNP 216925 to 217525 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,843 DEBUG Processing 328/681 atomic regions from SNP 98359 to 98959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,915 DEBUG Processing 461/712 atomic regions from SNP 138179 to 138779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,938 DEBUG Processing 119/668 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,979 DEBUG Processing 725/729 atomic regions from SNP 217225 to 217825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,054 DEBUG Processing 329/681 atomic regions from SNP 98659 to 99259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,105 DEBUG Processing 462/712 atomic regions from SNP 138479 to 139079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,128 DEBUG Processing 120/668 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,192 DEBUG Processing 726/729 atomic regions from SNP 217525 to 218125 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,254 DEBUG Processing 330/681 atomic regions from SNP 98959 to 99559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,298 DEBUG Processing 463/712 atomic regions from SNP 138779 to 139379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,315 DEBUG Processing 121/668 atomic regions from SNP 36120 to 36721 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,385 DEBUG Processing 727/729 atomic regions from SNP 217825 to 218425 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,464 DEBUG Processing 331/681 atomic regions from SNP 99259 to 99859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,492 DEBUG Processing 464/712 atomic regions from SNP 139079 to 139679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,506 DEBUG Processing 122/668 atomic regions from SNP 36421 to 37022 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,585 DEBUG Processing 728/729 atomic regions from SNP 218125 to 218725 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,661 DEBUG Processing 332/681 atomic regions from SNP 99559 to 100159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,686 DEBUG Processing 465/712 atomic regions from SNP 139379 to 139979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,694 DEBUG Processing 123/668 atomic regions from SNP 36722 to 37323 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,781 DEBUG Processing 729/729 atomic regions from SNP 218425 to 219025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,856 DEBUG Processing 333/681 atomic regions from SNP 99859 to 100459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,880 DEBUG Processing 466/712 atomic regions from SNP 139679 to 140279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,882 DEBUG Processing 124/668 atomic regions from SNP 37023 to 37624 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,907 DEBUG Unique SNPs positions in subchromosome 1: 219026 2025-01-31 09:55:51,065 DEBUG Processing 334/681 atomic regions from SNP 100159 to 100759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,071 DEBUG Processing 125/668 atomic regions from SNP 37324 to 37925 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,074 DEBUG Processing 467/712 atomic regions from SNP 139979 to 140579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,258 DEBUG Processing 126/668 atomic regions from SNP 37625 to 38226 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,267 DEBUG Processing 468/712 atomic regions from SNP 140279 to 140879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,284 DEBUG Processing 335/681 atomic regions from SNP 100459 to 101059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,445 DEBUG Processing 127/668 atomic regions from SNP 37926 to 38527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,460 DEBUG Processing 469/712 atomic regions from SNP 140579 to 141179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,512 DEBUG Processing 336/681 atomic regions from SNP 100759 to 101359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,654 DEBUG Processing 128/668 atomic regions from SNP 38227 to 38828 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,655 DEBUG Processing 470/712 atomic regions from SNP 140879 to 141479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,729 DEBUG Processing 337/681 atomic regions from SNP 101059 to 101659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,850 DEBUG Processing 471/712 atomic regions from SNP 141179 to 141779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,871 DEBUG Processing 129/668 atomic regions from SNP 38528 to 39129 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,921 DEBUG Processing 338/681 atomic regions from SNP 101359 to 101959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,040 DEBUG Processing 472/712 atomic regions from SNP 141479 to 142079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,071 DEBUG Processing 130/668 atomic regions from SNP 38829 to 39430 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,114 DEBUG Processing 339/681 atomic regions from SNP 101659 to 102259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,249 DEBUG Processing 473/712 atomic regions from SNP 141779 to 142379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,255 DEBUG Processing 131/668 atomic regions from SNP 39130 to 39731 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,316 DEBUG Processing 340/681 atomic regions from SNP 101959 to 102559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,442 DEBUG Processing 132/668 atomic regions from SNP 39431 to 40032 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,462 DEBUG Processing 474/712 atomic regions from SNP 142079 to 142679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,520 DEBUG Processing 341/681 atomic regions from SNP 102259 to 102859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,627 DEBUG Processing 133/668 atomic regions from SNP 39732 to 40333 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,662 DEBUG Processing 475/712 atomic regions from SNP 142379 to 142979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,720 DEBUG Processing 342/681 atomic regions from SNP 102559 to 103159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,815 DEBUG Processing 134/668 atomic regions from SNP 40033 to 40634 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,883 DEBUG Processing 476/712 atomic regions from SNP 142679 to 143279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,921 DEBUG Processing 343/681 atomic regions from SNP 102859 to 103459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,006 DEBUG Processing 135/668 atomic regions from SNP 40334 to 40935 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,095 DEBUG Processing 477/712 atomic regions from SNP 142979 to 143579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,115 DEBUG Processing 344/681 atomic regions from SNP 103159 to 103759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,194 DEBUG Processing 136/668 atomic regions from SNP 40635 to 41236 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,287 DEBUG Processing 478/712 atomic regions from SNP 143279 to 143879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,307 DEBUG Processing 345/681 atomic regions from SNP 103459 to 104059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,386 DEBUG Processing 137/668 atomic regions from SNP 40936 to 41537 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,486 DEBUG Processing 479/712 atomic regions from SNP 143579 to 144179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,507 DEBUG Processing 346/681 atomic regions from SNP 103759 to 104359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,574 DEBUG Processing 138/668 atomic regions from SNP 41237 to 41838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,686 DEBUG Processing 480/712 atomic regions from SNP 143879 to 144479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,707 DEBUG Processing 347/681 atomic regions from SNP 104059 to 104659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,764 DEBUG Processing 139/668 atomic regions from SNP 41538 to 42139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,903 DEBUG Processing 481/712 atomic regions from SNP 144179 to 144779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,910 DEBUG Processing 348/681 atomic regions from SNP 104359 to 104959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,951 DEBUG Processing 140/668 atomic regions from SNP 41839 to 42440 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,108 DEBUG Processing 482/712 atomic regions from SNP 144479 to 145079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,114 DEBUG Processing 349/681 atomic regions from SNP 104659 to 105259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,142 DEBUG Processing 141/668 atomic regions from SNP 42140 to 42741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,314 DEBUG Processing 350/681 atomic regions from SNP 104959 to 105559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,317 DEBUG Processing 483/712 atomic regions from SNP 144779 to 145379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,335 DEBUG Processing 142/668 atomic regions from SNP 42441 to 43042 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,481 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:55:54,483 DEBUG chr15: Signal quantile: 0.989. signal threshold: 23. Best RMSEA: 0.010 2025-01-31 09:55:54,527 DEBUG Processing 351/681 atomic regions from SNP 105259 to 105859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,527 DEBUG Processing 143/668 atomic regions from SNP 42742 to 43343 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,541 DEBUG Processing 484/712 atomic regions from SNP 145079 to 145679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,722 DEBUG Processing 144/668 atomic regions from SNP 43043 to 43644 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,753 DEBUG Processing 352/681 atomic regions from SNP 105559 to 106159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,777 DEBUG Processing 485/712 atomic regions from SNP 145379 to 145979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,916 DEBUG Processing 145/668 atomic regions from SNP 43344 to 43945 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,978 DEBUG Processing 353/681 atomic regions from SNP 105859 to 106459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,004 DEBUG Processing 486/712 atomic regions from SNP 145679 to 146279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,149 DEBUG Processing 146/668 atomic regions from SNP 43645 to 44246 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,213 DEBUG Processing 354/681 atomic regions from SNP 106159 to 106759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,214 DEBUG Processing 487/712 atomic regions from SNP 145979 to 146579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,218 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:55:55,219 DEBUG chr16: Signal quantile: 0.992. signal threshold: 20. Best RMSEA: 0.014 2025-01-31 09:55:55,353 DEBUG Processing 147/668 atomic regions from SNP 43946 to 44547 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,437 DEBUG Processing 488/712 atomic regions from SNP 146279 to 146879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,445 DEBUG Processing 355/681 atomic regions from SNP 106459 to 107059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,554 DEBUG Processing 148/668 atomic regions from SNP 44247 to 44848 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,653 DEBUG Processing 489/712 atomic regions from SNP 146579 to 147179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,675 DEBUG Processing 356/681 atomic regions from SNP 106759 to 107359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,778 DEBUG Processing 149/668 atomic regions from SNP 44548 to 45149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,846 DEBUG Processing 490/712 atomic regions from SNP 146879 to 147479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,893 DEBUG Processing 357/681 atomic regions from SNP 107059 to 107659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,995 DEBUG Processing 150/668 atomic regions from SNP 44849 to 45450 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,061 DEBUG Processing 491/712 atomic regions from SNP 147179 to 147779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,114 DEBUG Processing 358/681 atomic regions from SNP 107359 to 107959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,208 DEBUG chr15 total SNP count: 180780 2025-01-31 09:55:56,209 DEBUG chr15 length: 104043685 2025-01-31 09:55:56,209 DEBUG ----------------------------------------- 2025-01-31 09:55:56,209 INFO Processing SNPs in chr15 2025-01-31 09:55:56,209 DEBUG Processing 151/668 atomic regions from SNP 45150 to 45751 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,288 DEBUG Processing 492/712 atomic regions from SNP 147479 to 148079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,342 DEBUG Processing 359/681 atomic regions from SNP 107659 to 108259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,390 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 180780)] 2025-01-31 09:55:56,403 DEBUG Processing 152/668 atomic regions from SNP 45451 to 46052 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,482 DEBUG Processing 493/712 atomic regions from SNP 147779 to 148379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,511 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:56,572 DEBUG Processing 360/681 atomic regions from SNP 107959 to 108559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,598 DEBUG Processing 153/668 atomic regions from SNP 45752 to 46353 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,678 DEBUG Processing 494/712 atomic regions from SNP 148079 to 148679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,795 DEBUG Processing 361/681 atomic regions from SNP 108259 to 108859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,810 DEBUG Processing 154/668 atomic regions from SNP 46053 to 46654 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,856 DEBUG chr16 total SNP count: 170023 2025-01-31 09:55:56,856 DEBUG chr16 length: 98207768 2025-01-31 09:55:56,856 DEBUG ----------------------------------------- 2025-01-31 09:55:56,856 INFO Processing SNPs in chr16 2025-01-31 09:55:56,874 DEBUG Processing 495/712 atomic regions from SNP 148379 to 148979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,992 DEBUG Processing 362/681 atomic regions from SNP 108559 to 109159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,016 DEBUG Processing 155/668 atomic regions from SNP 46354 to 46955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,025 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 170023)] 2025-01-31 09:55:57,076 DEBUG Processing 496/712 atomic regions from SNP 148679 to 149279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,138 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:57,184 DEBUG Processing 363/681 atomic regions from SNP 108859 to 109459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,224 DEBUG Processing 156/668 atomic regions from SNP 46655 to 47256 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,270 DEBUG Processing 497/712 atomic regions from SNP 148979 to 149579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,377 DEBUG Processing 364/681 atomic regions from SNP 109159 to 109759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,437 DEBUG Processing 157/668 atomic regions from SNP 46956 to 47557 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,473 DEBUG Processing 498/712 atomic regions from SNP 149279 to 149879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,575 DEBUG Processing 365/681 atomic regions from SNP 109459 to 110059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,639 DEBUG Processing 158/668 atomic regions from SNP 47257 to 47858 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,690 DEBUG Processing 499/712 atomic regions from SNP 149579 to 150179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,765 DEBUG Processing 366/681 atomic regions from SNP 109759 to 110359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,827 DEBUG Processing 159/668 atomic regions from SNP 47558 to 48159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,900 DEBUG Processing 500/712 atomic regions from SNP 149879 to 150479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,955 DEBUG Processing 367/681 atomic regions from SNP 110059 to 110659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,015 DEBUG Processing 160/668 atomic regions from SNP 47859 to 48460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,112 DEBUG Processing 501/712 atomic regions from SNP 150179 to 150779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,150 DEBUG Processing 368/681 atomic regions from SNP 110359 to 110959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,202 DEBUG Processing 161/668 atomic regions from SNP 48160 to 48761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,339 DEBUG Processing 502/712 atomic regions from SNP 150479 to 151079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,345 DEBUG Processing 369/681 atomic regions from SNP 110659 to 111259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,390 DEBUG Processing 162/668 atomic regions from SNP 48461 to 49062 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,542 DEBUG Processing 370/681 atomic regions from SNP 110959 to 111559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,572 DEBUG Processing 503/712 atomic regions from SNP 150779 to 151379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,578 DEBUG Processing 163/668 atomic regions from SNP 48762 to 49363 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,739 DEBUG Processing 371/681 atomic regions from SNP 111259 to 111859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,765 DEBUG Processing 164/668 atomic regions from SNP 49063 to 49664 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,790 DEBUG Processing 504/712 atomic regions from SNP 151079 to 151679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,932 DEBUG Processing 372/681 atomic regions from SNP 111559 to 112159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,950 DEBUG Processing 165/668 atomic regions from SNP 49364 to 49965 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,015 DEBUG Processing 505/712 atomic regions from SNP 151379 to 151979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,127 DEBUG Processing 373/681 atomic regions from SNP 111859 to 112459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,139 DEBUG Processing 166/668 atomic regions from SNP 49665 to 50266 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,242 DEBUG Processing 506/712 atomic regions from SNP 151679 to 152279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,318 DEBUG Processing 374/681 atomic regions from SNP 112159 to 112759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,327 DEBUG Processing 167/668 atomic regions from SNP 49966 to 50567 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,455 DEBUG Processing 507/712 atomic regions from SNP 151979 to 152579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,514 DEBUG Processing 375/681 atomic regions from SNP 112459 to 113059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,519 DEBUG Processing 168/668 atomic regions from SNP 50267 to 50868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,652 DEBUG Processing 508/712 atomic regions from SNP 152279 to 152879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,707 DEBUG Processing 169/668 atomic regions from SNP 50568 to 51169 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,707 DEBUG Processing 376/681 atomic regions from SNP 112759 to 113359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,855 DEBUG Processing 509/712 atomic regions from SNP 152579 to 153179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,894 DEBUG Processing 170/668 atomic regions from SNP 50869 to 51470 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,899 DEBUG Processing 377/681 atomic regions from SNP 113059 to 113659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,060 DEBUG Processing 510/712 atomic regions from SNP 152879 to 153479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,082 DEBUG Processing 171/668 atomic regions from SNP 51170 to 51771 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,093 DEBUG Processing 378/681 atomic regions from SNP 113359 to 113959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,269 DEBUG Processing 172/668 atomic regions from SNP 51471 to 52072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,275 DEBUG Processing 511/712 atomic regions from SNP 153179 to 153779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,286 DEBUG Processing 379/681 atomic regions from SNP 113659 to 114259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,457 DEBUG Processing 173/668 atomic regions from SNP 51772 to 52373 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,483 DEBUG Processing 512/712 atomic regions from SNP 153479 to 154079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,487 DEBUG Processing 380/681 atomic regions from SNP 113959 to 114559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,644 DEBUG Processing 174/668 atomic regions from SNP 52073 to 52674 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,680 DEBUG Processing 513/712 atomic regions from SNP 153779 to 154379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,714 DEBUG Processing 381/681 atomic regions from SNP 114259 to 114859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,830 DEBUG Processing 175/668 atomic regions from SNP 52374 to 52975 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,874 DEBUG Processing 514/712 atomic regions from SNP 154079 to 154679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,938 DEBUG Processing 382/681 atomic regions from SNP 114559 to 115159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,017 DEBUG Processing 176/668 atomic regions from SNP 52675 to 53276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,067 DEBUG Processing 515/712 atomic regions from SNP 154379 to 154979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,142 DEBUG Processing 383/681 atomic regions from SNP 114859 to 115459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,205 DEBUG Processing 177/668 atomic regions from SNP 52976 to 53577 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,262 DEBUG Processing 516/712 atomic regions from SNP 154679 to 155279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,335 DEBUG Processing 384/681 atomic regions from SNP 115159 to 115759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,392 DEBUG Processing 178/668 atomic regions from SNP 53277 to 53878 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,455 DEBUG Processing 517/712 atomic regions from SNP 154979 to 155579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,525 DEBUG Processing 385/681 atomic regions from SNP 115459 to 116059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,582 DEBUG Processing 179/668 atomic regions from SNP 53578 to 54179 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,650 DEBUG Processing 518/712 atomic regions from SNP 155279 to 155879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,720 DEBUG Processing 386/681 atomic regions from SNP 115759 to 116359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,770 DEBUG Processing 180/668 atomic regions from SNP 53879 to 54480 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,842 DEBUG Processing 519/712 atomic regions from SNP 155579 to 156179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,913 DEBUG Processing 387/681 atomic regions from SNP 116059 to 116659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,955 DEBUG Processing 181/668 atomic regions from SNP 54180 to 54781 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,034 DEBUG Processing 520/712 atomic regions from SNP 155879 to 156479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,112 DEBUG Processing 388/681 atomic regions from SNP 116359 to 116959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,142 DEBUG Processing 182/668 atomic regions from SNP 54481 to 55082 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,227 DEBUG Processing 521/712 atomic regions from SNP 156179 to 156779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,303 DEBUG Processing 389/681 atomic regions from SNP 116659 to 117259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,328 DEBUG Processing 183/668 atomic regions from SNP 54782 to 55383 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,421 DEBUG Processing 522/712 atomic regions from SNP 156479 to 157079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,492 DEBUG Processing 390/681 atomic regions from SNP 116959 to 117559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,515 DEBUG Processing 184/668 atomic regions from SNP 55083 to 55684 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,614 DEBUG Processing 523/712 atomic regions from SNP 156779 to 157379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,686 DEBUG Processing 391/681 atomic regions from SNP 117259 to 117859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,701 DEBUG Processing 185/668 atomic regions from SNP 55384 to 55985 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,809 DEBUG Processing 524/712 atomic regions from SNP 157079 to 157679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,880 DEBUG Processing 392/681 atomic regions from SNP 117559 to 118159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,888 DEBUG Processing 186/668 atomic regions from SNP 55685 to 56286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,010 DEBUG Subchromosome time: 188.93844175711274, subchromosome SNPs: 219026 2025-01-31 09:56:03,010 DEBUG Estimated BADs: [0.75, 4.51, 0.75, 2.26, 0.75, 9.02, 2.26, 1.13, 2.26, 0.56, 2.26, 0.38, 1.13, 18.05, 2.26, 4.51, 2.26, 6.77, 2.26, 4.51, 2.26, 0.75, 4.51, 1.13, 2.26, 0.56, 2.26, 6.77, 1.13, 9.02, 4.51, 2.26, 4.51] SNP counts: [7626, 592, 8954, 4002, 8490, 3164, 6284, 9933, 3274, 2075, 6626, 3600, 1642, 101, 4336, 5388, 20038, 5762, 2865, 10893, 17151, 2747, 1966, 18986, 823, 5686, 22721, 1461, 538, 3198, 3300, 15562, 9242] SNP IDs counts: [7626, 592, 8954, 4002, 8490, 3164, 6284, 9933, 3274, 2075, 6626, 3600, 1642, 101, 4336, 5388, 20038, 5762, 2865, 10893, 17151, 2747, 1966, 18986, 823, 5686, 22721, 1461, 538, 3198, 3300, 15562, 9242] Critical gap: 596279bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 7.57Mbp, 7.91Mbp, 13.19Mbp, 15.44Mbp, 20.47Mbp, 22.14Mbp, 25.66Mbp, 31.07Mbp, 32.80Mbp, 33.99Mbp, 37.73Mbp, 39.82Mbp, 40.76Mbp, 40.81Mbp, 43.09Mbp, 45.90Mbp, 56.72Mbp, 59.75Mbp, 61.26Mbp, 66.97Mbp, 76.24Mbp, 77.75Mbp, 78.87Mbp, 90.11Mbp, 90.59Mbp, 93.92Mbp, 106.14Mbp, 106.93Mbp, 107.25Mbp, 108.96Mbp, 110.85Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:56:03,010 DEBUG chr9 time: 188.93904495611787 s 2025-01-31 09:56:03,011 DEBUG Processing 525/712 atomic regions from SNP 157379 to 157979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,081 DEBUG Processing 393/681 atomic regions from SNP 117859 to 118459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,084 DEBUG Processing 187/668 atomic regions from SNP 55986 to 56587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,130 DEBUG chr9: Fitting background model for 33 segments 2025-01-31 09:56:03,209 DEBUG Processing 526/712 atomic regions from SNP 157679 to 158279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,272 DEBUG Processing 188/668 atomic regions from SNP 56287 to 56888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,275 DEBUG Processing 394/681 atomic regions from SNP 118159 to 118759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,413 DEBUG Processing 527/712 atomic regions from SNP 157979 to 158579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,468 DEBUG Processing 189/668 atomic regions from SNP 56588 to 57189 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,476 DEBUG Processing 395/681 atomic regions from SNP 118459 to 119059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,616 DEBUG Processing 528/712 atomic regions from SNP 158279 to 158879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,659 DEBUG Processing 190/668 atomic regions from SNP 56889 to 57490 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,675 DEBUG Processing 396/681 atomic regions from SNP 118759 to 119359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,822 DEBUG Processing 529/712 atomic regions from SNP 158579 to 159179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,855 DEBUG Processing 191/668 atomic regions from SNP 57190 to 57791 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,874 DEBUG Processing 397/681 atomic regions from SNP 119059 to 119659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,016 DEBUG Processing 530/712 atomic regions from SNP 158879 to 159479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,040 DEBUG Processing 192/668 atomic regions from SNP 57491 to 58092 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,086 DEBUG Processing 398/681 atomic regions from SNP 119359 to 119959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,208 DEBUG Processing 531/712 atomic regions from SNP 159179 to 159779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,225 DEBUG Processing 193/668 atomic regions from SNP 57792 to 58393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,288 DEBUG Processing 399/681 atomic regions from SNP 119659 to 120259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,404 DEBUG Processing 532/712 atomic regions from SNP 159479 to 160079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,412 DEBUG Processing 194/668 atomic regions from SNP 58093 to 58694 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,479 DEBUG Processing 400/681 atomic regions from SNP 119959 to 120559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,599 DEBUG Processing 195/668 atomic regions from SNP 58394 to 58995 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,601 DEBUG Processing 533/712 atomic regions from SNP 159779 to 160379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,668 DEBUG Processing 401/681 atomic regions from SNP 120259 to 120859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,790 DEBUG Processing 196/668 atomic regions from SNP 58695 to 59296 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,800 DEBUG Processing 534/712 atomic regions from SNP 160079 to 160679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,871 DEBUG Processing 402/681 atomic regions from SNP 120559 to 121159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,002 DEBUG Processing 197/668 atomic regions from SNP 58996 to 59597 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,016 DEBUG Processing 535/712 atomic regions from SNP 160379 to 160979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,074 DEBUG Processing 403/681 atomic regions from SNP 120859 to 121459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,196 DEBUG Processing 198/668 atomic regions from SNP 59297 to 59898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,227 DEBUG Processing 536/712 atomic regions from SNP 160679 to 161279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,307 DEBUG Processing 404/681 atomic regions from SNP 121159 to 121759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,382 DEBUG Processing 199/668 atomic regions from SNP 59598 to 60199 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,423 DEBUG Processing 537/712 atomic regions from SNP 160979 to 161579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,532 DEBUG Processing 405/681 atomic regions from SNP 121459 to 122059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,568 DEBUG Processing 200/668 atomic regions from SNP 59899 to 60500 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,614 DEBUG Processing 538/712 atomic regions from SNP 161279 to 161879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,752 DEBUG Processing 201/668 atomic regions from SNP 60200 to 60801 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,756 DEBUG Processing 406/681 atomic regions from SNP 121759 to 122359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,804 DEBUG Processing 539/712 atomic regions from SNP 161579 to 162179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,938 DEBUG Processing 202/668 atomic regions from SNP 60501 to 61102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,977 DEBUG Processing 407/681 atomic regions from SNP 122059 to 122659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,003 DEBUG Processing 540/712 atomic regions from SNP 161879 to 162479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,125 DEBUG Processing 203/668 atomic regions from SNP 60802 to 61403 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,200 DEBUG Processing 408/681 atomic regions from SNP 122359 to 122959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,210 DEBUG Processing 541/712 atomic regions from SNP 162179 to 162779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,310 DEBUG Processing 204/668 atomic regions from SNP 61103 to 61704 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,423 DEBUG Processing 542/712 atomic regions from SNP 162479 to 163079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,424 DEBUG Processing 409/681 atomic regions from SNP 122659 to 123259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,495 DEBUG Processing 205/668 atomic regions from SNP 61404 to 62005 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,649 DEBUG Processing 410/681 atomic regions from SNP 122959 to 123559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,652 DEBUG Processing 543/712 atomic regions from SNP 162779 to 163379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,683 DEBUG Processing 206/668 atomic regions from SNP 61705 to 62306 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,864 DEBUG Processing 411/681 atomic regions from SNP 123259 to 123859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,870 DEBUG Processing 544/712 atomic regions from SNP 163079 to 163679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,870 DEBUG Processing 207/668 atomic regions from SNP 62006 to 62607 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,055 DEBUG Processing 208/668 atomic regions from SNP 62307 to 62908 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,072 DEBUG Processing 412/681 atomic regions from SNP 123559 to 124159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,080 DEBUG Processing 545/712 atomic regions from SNP 163379 to 163979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,243 DEBUG Processing 209/668 atomic regions from SNP 62608 to 63209 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,270 DEBUG Processing 413/681 atomic regions from SNP 123859 to 124459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,278 DEBUG Processing 546/712 atomic regions from SNP 163679 to 164279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,429 DEBUG Processing 210/668 atomic regions from SNP 62909 to 63510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,459 DEBUG Processing 414/681 atomic regions from SNP 124159 to 124759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,499 DEBUG Processing 547/712 atomic regions from SNP 163979 to 164579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,619 DEBUG Processing 211/668 atomic regions from SNP 63210 to 63811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,656 DEBUG Processing 415/681 atomic regions from SNP 124459 to 125059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,720 DEBUG Processing 548/712 atomic regions from SNP 164279 to 164879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,804 DEBUG Processing 212/668 atomic regions from SNP 63511 to 64112 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,846 DEBUG Processing 416/681 atomic regions from SNP 124759 to 125359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,943 DEBUG Processing 549/712 atomic regions from SNP 164579 to 165179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,994 DEBUG Processing 213/668 atomic regions from SNP 63812 to 64413 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,040 DEBUG Processing 417/681 atomic regions from SNP 125059 to 125659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,166 DEBUG Processing 550/712 atomic regions from SNP 164879 to 165479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,193 DEBUG Processing 214/668 atomic regions from SNP 64113 to 64714 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,250 DEBUG Processing 418/681 atomic regions from SNP 125359 to 125959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,388 DEBUG Processing 551/712 atomic regions from SNP 165179 to 165779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,392 DEBUG Processing 215/668 atomic regions from SNP 64414 to 65015 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,468 DEBUG Processing 419/681 atomic regions from SNP 125659 to 126259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,577 DEBUG Processing 216/668 atomic regions from SNP 64715 to 65316 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,608 DEBUG Processing 552/712 atomic regions from SNP 165479 to 166079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,666 DEBUG Processing 420/681 atomic regions from SNP 125959 to 126559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,765 DEBUG Processing 217/668 atomic regions from SNP 65016 to 65617 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,829 DEBUG Processing 553/712 atomic regions from SNP 165779 to 166379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,859 DEBUG Processing 421/681 atomic regions from SNP 126259 to 126859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,954 DEBUG Processing 218/668 atomic regions from SNP 65317 to 65918 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,046 DEBUG Processing 554/712 atomic regions from SNP 166079 to 166679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,048 DEBUG Processing 422/681 atomic regions from SNP 126559 to 127159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,142 DEBUG Processing 219/668 atomic regions from SNP 65618 to 66219 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,241 DEBUG Processing 423/681 atomic regions from SNP 126859 to 127459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,252 DEBUG Processing 555/712 atomic regions from SNP 166379 to 166979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,328 DEBUG Processing 220/668 atomic regions from SNP 65919 to 66520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,431 DEBUG Processing 424/681 atomic regions from SNP 127159 to 127759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,444 DEBUG Processing 556/712 atomic regions from SNP 166679 to 167279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,511 DEBUG Processing 221/668 atomic regions from SNP 66220 to 66821 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,620 DEBUG Processing 425/681 atomic regions from SNP 127459 to 128059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,635 DEBUG Processing 557/712 atomic regions from SNP 166979 to 167579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,695 DEBUG Processing 222/668 atomic regions from SNP 66521 to 67122 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,810 DEBUG Processing 426/681 atomic regions from SNP 127759 to 128359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,839 DEBUG Processing 558/712 atomic regions from SNP 167279 to 167879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,880 DEBUG Processing 223/668 atomic regions from SNP 66822 to 67423 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,001 DEBUG Processing 427/681 atomic regions from SNP 128059 to 128659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,063 DEBUG Processing 559/712 atomic regions from SNP 167579 to 168179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,064 DEBUG Processing 224/668 atomic regions from SNP 67123 to 67724 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,192 DEBUG Processing 428/681 atomic regions from SNP 128359 to 128959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,251 DEBUG Processing 225/668 atomic regions from SNP 67424 to 68025 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,290 DEBUG Processing 560/712 atomic regions from SNP 167879 to 168479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,378 DEBUG Processing 429/681 atomic regions from SNP 128659 to 129259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,433 DEBUG Processing 226/668 atomic regions from SNP 67725 to 68326 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,510 DEBUG Processing 561/712 atomic regions from SNP 168179 to 168779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,565 DEBUG Processing 430/681 atomic regions from SNP 128959 to 129559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,617 DEBUG Processing 227/668 atomic regions from SNP 68026 to 68627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,731 DEBUG Processing 562/712 atomic regions from SNP 168479 to 169079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,754 DEBUG Processing 431/681 atomic regions from SNP 129259 to 129859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,801 DEBUG Processing 228/668 atomic regions from SNP 68327 to 68928 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,946 DEBUG Processing 432/681 atomic regions from SNP 129559 to 130159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,956 DEBUG Processing 563/712 atomic regions from SNP 168779 to 169379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,983 DEBUG Processing 229/668 atomic regions from SNP 68628 to 69229 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,164 DEBUG Processing 230/668 atomic regions from SNP 68929 to 69530 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,165 DEBUG Processing 433/681 atomic regions from SNP 129859 to 130459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,181 DEBUG Processing 564/712 atomic regions from SNP 169079 to 169679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,348 DEBUG Processing 231/668 atomic regions from SNP 69230 to 69831 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,357 DEBUG Processing 434/681 atomic regions from SNP 130159 to 130759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,404 DEBUG Processing 565/712 atomic regions from SNP 169379 to 169979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,531 DEBUG Processing 232/668 atomic regions from SNP 69531 to 70132 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,547 DEBUG Processing 435/681 atomic regions from SNP 130459 to 131059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,627 DEBUG Processing 566/712 atomic regions from SNP 169679 to 170279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,714 DEBUG Processing 233/668 atomic regions from SNP 69832 to 70433 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,737 DEBUG Processing 436/681 atomic regions from SNP 130759 to 131359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,838 DEBUG Processing 567/712 atomic regions from SNP 169979 to 170579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,900 DEBUG Processing 234/668 atomic regions from SNP 70133 to 70734 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,931 DEBUG Processing 437/681 atomic regions from SNP 131059 to 131659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,054 DEBUG Processing 568/712 atomic regions from SNP 170279 to 170879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,089 DEBUG Processing 235/668 atomic regions from SNP 70434 to 71035 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,121 DEBUG Processing 438/681 atomic regions from SNP 131359 to 131959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,271 DEBUG Processing 569/712 atomic regions from SNP 170579 to 171179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,276 DEBUG Processing 236/668 atomic regions from SNP 70735 to 71336 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,313 DEBUG Processing 439/681 atomic regions from SNP 131659 to 132259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,463 DEBUG Processing 237/668 atomic regions from SNP 71036 to 71637 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,496 DEBUG Processing 570/712 atomic regions from SNP 170879 to 171479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,504 DEBUG Processing 440/681 atomic regions from SNP 131959 to 132559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,651 DEBUG Processing 238/668 atomic regions from SNP 71337 to 71938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,701 DEBUG Processing 441/681 atomic regions from SNP 132259 to 132859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,718 DEBUG Processing 571/712 atomic regions from SNP 171179 to 171779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,842 DEBUG Processing 239/668 atomic regions from SNP 71638 to 72239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,900 DEBUG Processing 442/681 atomic regions from SNP 132559 to 133159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,948 DEBUG Processing 572/712 atomic regions from SNP 171479 to 172079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,030 DEBUG Processing 240/668 atomic regions from SNP 71939 to 72540 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,094 DEBUG Processing 443/681 atomic regions from SNP 132859 to 133459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,159 DEBUG Processing 573/712 atomic regions from SNP 171779 to 172379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,215 DEBUG Processing 241/668 atomic regions from SNP 72240 to 72841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,290 DEBUG Processing 444/681 atomic regions from SNP 133159 to 133759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,349 DEBUG Processing 574/712 atomic regions from SNP 172079 to 172679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,402 DEBUG Processing 242/668 atomic regions from SNP 72541 to 73142 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,484 DEBUG Processing 445/681 atomic regions from SNP 133459 to 134059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,540 DEBUG Processing 575/712 atomic regions from SNP 172379 to 172979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,588 DEBUG Processing 243/668 atomic regions from SNP 72842 to 73443 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,678 DEBUG Processing 446/681 atomic regions from SNP 133759 to 134359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,732 DEBUG Processing 576/712 atomic regions from SNP 172679 to 173279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,773 DEBUG Processing 244/668 atomic regions from SNP 73143 to 73744 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,869 DEBUG Processing 447/681 atomic regions from SNP 134059 to 134659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,923 DEBUG Processing 577/712 atomic regions from SNP 172979 to 173579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,962 DEBUG Processing 245/668 atomic regions from SNP 73444 to 74045 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,078 DEBUG Processing 448/681 atomic regions from SNP 134359 to 134959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,114 DEBUG Processing 578/712 atomic regions from SNP 173279 to 173879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,151 DEBUG Processing 246/668 atomic regions from SNP 73745 to 74346 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,290 DEBUG Processing 449/681 atomic regions from SNP 134659 to 135259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,305 DEBUG Processing 579/712 atomic regions from SNP 173579 to 174179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,337 DEBUG Processing 247/668 atomic regions from SNP 74046 to 74647 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,484 DEBUG Processing 450/681 atomic regions from SNP 134959 to 135559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,524 DEBUG Processing 580/712 atomic regions from SNP 173879 to 174479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,526 DEBUG Processing 248/668 atomic regions from SNP 74347 to 74948 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,675 DEBUG Processing 451/681 atomic regions from SNP 135259 to 135859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,713 DEBUG Processing 249/668 atomic regions from SNP 74648 to 75249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,748 DEBUG Processing 581/712 atomic regions from SNP 174179 to 174779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,869 DEBUG Processing 452/681 atomic regions from SNP 135559 to 136159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,901 DEBUG Processing 250/668 atomic regions from SNP 74949 to 75550 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,974 DEBUG Processing 582/712 atomic regions from SNP 174479 to 175079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,088 DEBUG Processing 453/681 atomic regions from SNP 135859 to 136459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,089 DEBUG Processing 251/668 atomic regions from SNP 75250 to 75851 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,194 DEBUG Processing 583/712 atomic regions from SNP 174779 to 175379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,277 DEBUG Processing 252/668 atomic regions from SNP 75551 to 76152 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,313 DEBUG Processing 454/681 atomic regions from SNP 136159 to 136759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,404 DEBUG Processing 584/712 atomic regions from SNP 175079 to 175679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,465 DEBUG Processing 253/668 atomic regions from SNP 75852 to 76453 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,503 DEBUG Processing 455/681 atomic regions from SNP 136459 to 137059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,629 DEBUG Processing 585/712 atomic regions from SNP 175379 to 175979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,652 DEBUG Processing 254/668 atomic regions from SNP 76153 to 76754 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,692 DEBUG Processing 456/681 atomic regions from SNP 136759 to 137359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,840 DEBUG Processing 255/668 atomic regions from SNP 76454 to 77055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,857 DEBUG Processing 586/712 atomic regions from SNP 175679 to 176279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,889 DEBUG Processing 457/681 atomic regions from SNP 137059 to 137659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,033 DEBUG Processing 256/668 atomic regions from SNP 76755 to 77355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,088 DEBUG Processing 587/712 atomic regions from SNP 175979 to 176579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,088 DEBUG Processing 458/681 atomic regions from SNP 137359 to 137959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,216 DEBUG Processing 257/668 atomic regions from SNP 77055 to 77655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,283 DEBUG Processing 459/681 atomic regions from SNP 137659 to 138259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,313 DEBUG Processing 588/712 atomic regions from SNP 176279 to 176879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,402 DEBUG Processing 258/668 atomic regions from SNP 77355 to 77955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,478 DEBUG Processing 460/681 atomic regions from SNP 137959 to 138559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,525 DEBUG Processing 589/712 atomic regions from SNP 176579 to 177179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,586 DEBUG Processing 259/668 atomic regions from SNP 77655 to 78255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,672 DEBUG Processing 461/681 atomic regions from SNP 138259 to 138859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,740 DEBUG Processing 590/712 atomic regions from SNP 176879 to 177479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,775 DEBUG Processing 260/668 atomic regions from SNP 77955 to 78555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,861 DEBUG Processing 462/681 atomic regions from SNP 138559 to 139159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,968 DEBUG Processing 591/712 atomic regions from SNP 177179 to 177779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,974 DEBUG Processing 261/668 atomic regions from SNP 78255 to 78855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,054 DEBUG Processing 463/681 atomic regions from SNP 138859 to 139459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,186 DEBUG Processing 262/668 atomic regions from SNP 78555 to 79155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,200 DEBUG Processing 592/712 atomic regions from SNP 177479 to 178079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,249 DEBUG Processing 464/681 atomic regions from SNP 139159 to 139759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,371 DEBUG Segmenting atomic regions: 2025-01-31 09:56:17,402 DEBUG Processing 263/668 atomic regions from SNP 78855 to 79455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,423 DEBUG Processing 593/712 atomic regions from SNP 177779 to 178379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,444 DEBUG Processing 1/565 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,455 DEBUG Processing 465/681 atomic regions from SNP 139459 to 140059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,615 DEBUG Processing 264/668 atomic regions from SNP 79155 to 79755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,627 DEBUG Processing 2/565 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,642 DEBUG Processing 594/712 atomic regions from SNP 178079 to 178679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,673 DEBUG Processing 466/681 atomic regions from SNP 139759 to 140359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,815 DEBUG Processing 265/668 atomic regions from SNP 79455 to 80055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,821 DEBUG Processing 3/565 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,853 DEBUG Processing 595/712 atomic regions from SNP 178379 to 178979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,867 DEBUG Processing 467/681 atomic regions from SNP 140059 to 140659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,002 DEBUG Processing 266/668 atomic regions from SNP 79755 to 80355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,026 DEBUG Processing 4/565 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,064 DEBUG Processing 468/681 atomic regions from SNP 140359 to 140959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,070 DEBUG Processing 596/712 atomic regions from SNP 178679 to 179279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,211 DEBUG Processing 267/668 atomic regions from SNP 80055 to 80655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,226 DEBUG Processing 5/565 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,228 DEBUG Segmenting atomic regions: 2025-01-31 09:56:18,257 DEBUG Processing 469/681 atomic regions from SNP 140659 to 141259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,296 DEBUG Processing 597/712 atomic regions from SNP 178979 to 179579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,309 DEBUG Processing 1/601 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,428 DEBUG Processing 6/565 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,434 DEBUG Processing 268/668 atomic regions from SNP 80355 to 80955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,454 DEBUG Processing 470/681 atomic regions from SNP 140959 to 141559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,488 DEBUG Processing 2/601 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,523 DEBUG Processing 598/712 atomic regions from SNP 179279 to 179879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,631 DEBUG Processing 269/668 atomic regions from SNP 80655 to 81255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,640 DEBUG Processing 7/565 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,658 DEBUG Processing 471/681 atomic regions from SNP 141259 to 141859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,674 DEBUG Processing 3/601 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,747 DEBUG Processing 599/712 atomic regions from SNP 179579 to 180179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,818 DEBUG Processing 270/668 atomic regions from SNP 80955 to 81555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,853 DEBUG Processing 472/681 atomic regions from SNP 141559 to 142159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,854 DEBUG Processing 8/565 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,855 DEBUG Processing 4/601 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,940 DEBUG Processing 600/712 atomic regions from SNP 179879 to 180479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,004 DEBUG Processing 271/668 atomic regions from SNP 81255 to 81855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,036 DEBUG Processing 5/601 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,050 DEBUG Processing 473/681 atomic regions from SNP 141859 to 142459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,069 DEBUG Processing 9/565 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,137 DEBUG Processing 601/712 atomic regions from SNP 180179 to 180779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,192 DEBUG Processing 272/668 atomic regions from SNP 81555 to 82155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,218 DEBUG Processing 6/601 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,247 DEBUG Processing 474/681 atomic regions from SNP 142159 to 142759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,288 DEBUG Processing 10/565 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,346 DEBUG Processing 602/712 atomic regions from SNP 180479 to 181079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,377 DEBUG Processing 273/668 atomic regions from SNP 81855 to 82455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,399 DEBUG Processing 7/601 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,442 DEBUG Processing 475/681 atomic regions from SNP 142459 to 143059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,498 DEBUG Processing 11/565 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,550 DEBUG Processing 603/712 atomic regions from SNP 180779 to 181379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,564 DEBUG Processing 274/668 atomic regions from SNP 82155 to 82755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,581 DEBUG Processing 8/601 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,637 DEBUG Processing 476/681 atomic regions from SNP 142759 to 143359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,710 DEBUG Processing 12/565 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,753 DEBUG Processing 275/668 atomic regions from SNP 82455 to 83055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,757 DEBUG Processing 604/712 atomic regions from SNP 181079 to 181679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,763 DEBUG Processing 9/601 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,832 DEBUG Processing 477/681 atomic regions from SNP 143059 to 143659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,899 DEBUG Processing 13/565 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,940 DEBUG Processing 276/668 atomic regions from SNP 82755 to 83355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,945 DEBUG Processing 10/601 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,962 DEBUG Processing 605/712 atomic regions from SNP 181379 to 181979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,025 DEBUG Processing 478/681 atomic regions from SNP 143359 to 143959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,075 DEBUG Processing 14/565 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,124 DEBUG Processing 11/601 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,126 DEBUG Processing 277/668 atomic regions from SNP 83055 to 83655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,159 DEBUG Processing 606/712 atomic regions from SNP 181679 to 182279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,219 DEBUG Processing 479/681 atomic regions from SNP 143659 to 144259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,259 DEBUG Processing 15/565 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,337 DEBUG Processing 12/601 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,351 DEBUG Processing 278/668 atomic regions from SNP 83355 to 83955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,365 DEBUG Processing 607/712 atomic regions from SNP 181979 to 182579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,415 DEBUG Processing 480/681 atomic regions from SNP 143959 to 144559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,434 DEBUG Processing 16/565 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,536 DEBUG Processing 13/601 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,546 DEBUG Processing 279/668 atomic regions from SNP 83655 to 84255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,558 DEBUG Processing 608/712 atomic regions from SNP 182279 to 182879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,609 DEBUG Processing 17/565 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,612 DEBUG Processing 481/681 atomic regions from SNP 144259 to 144859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,714 DEBUG Processing 14/601 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,734 DEBUG Processing 280/668 atomic regions from SNP 83955 to 84555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,751 DEBUG Processing 609/712 atomic regions from SNP 182579 to 183179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,786 DEBUG Processing 18/565 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,809 DEBUG Processing 482/681 atomic regions from SNP 144559 to 145159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,891 DEBUG Processing 15/601 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,950 DEBUG Processing 281/668 atomic regions from SNP 84255 to 84855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,964 DEBUG Processing 19/565 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,967 DEBUG Processing 610/712 atomic regions from SNP 182879 to 183479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,004 DEBUG Processing 483/681 atomic regions from SNP 144859 to 145459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,065 DEBUG Processing 16/601 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,143 DEBUG Processing 20/565 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,167 DEBUG Processing 282/668 atomic regions from SNP 84555 to 85155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,185 DEBUG Processing 611/712 atomic regions from SNP 183179 to 183779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,201 DEBUG Processing 484/681 atomic regions from SNP 145159 to 145759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,239 DEBUG Processing 17/601 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,317 DEBUG Processing 21/565 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,383 DEBUG Processing 283/668 atomic regions from SNP 84855 to 85455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,399 DEBUG Processing 612/712 atomic regions from SNP 183479 to 184079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,400 DEBUG Processing 485/681 atomic regions from SNP 145459 to 146059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,415 DEBUG Processing 18/601 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,490 DEBUG Processing 22/565 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,593 DEBUG Processing 19/601 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,594 DEBUG Processing 613/712 atomic regions from SNP 183779 to 184379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,598 DEBUG Processing 486/681 atomic regions from SNP 145759 to 146359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,601 DEBUG Processing 284/668 atomic regions from SNP 85155 to 85755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,661 DEBUG Processing 23/565 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,772 DEBUG Processing 20/601 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,787 DEBUG Processing 614/712 atomic regions from SNP 184079 to 184679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,798 DEBUG Processing 487/681 atomic regions from SNP 146059 to 146659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,814 DEBUG Processing 285/668 atomic regions from SNP 85455 to 86055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,836 DEBUG Processing 24/565 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,963 DEBUG Processing 21/601 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,997 DEBUG Processing 488/681 atomic regions from SNP 146359 to 146959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,003 DEBUG Processing 286/668 atomic regions from SNP 85755 to 86355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,004 DEBUG Processing 615/712 atomic regions from SNP 184379 to 184979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,010 DEBUG Processing 25/565 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,152 DEBUG Processing 22/601 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,192 DEBUG Processing 26/565 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,195 DEBUG Processing 287/668 atomic regions from SNP 86055 to 86655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,199 DEBUG Processing 489/681 atomic regions from SNP 146659 to 147259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,224 DEBUG Processing 616/712 atomic regions from SNP 184679 to 185279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,331 DEBUG Processing 23/601 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,375 DEBUG Processing 27/565 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,389 DEBUG Processing 288/668 atomic regions from SNP 86355 to 86955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,403 DEBUG Processing 490/681 atomic regions from SNP 146959 to 147559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,451 DEBUG Processing 617/712 atomic regions from SNP 184979 to 185579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,506 DEBUG Processing 24/601 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,551 DEBUG Processing 28/565 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,577 DEBUG Processing 289/668 atomic regions from SNP 86655 to 87255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,601 DEBUG Processing 491/681 atomic regions from SNP 147259 to 147859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,668 DEBUG Processing 618/712 atomic regions from SNP 185279 to 185879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,682 DEBUG Processing 25/601 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,724 DEBUG Processing 29/565 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,762 DEBUG Processing 290/668 atomic regions from SNP 86955 to 87555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,794 DEBUG Processing 492/681 atomic regions from SNP 147559 to 148159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,859 DEBUG Processing 26/601 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,883 DEBUG Processing 619/712 atomic regions from SNP 185579 to 186179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,899 DEBUG Processing 30/565 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,946 DEBUG Processing 291/668 atomic regions from SNP 87255 to 87855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,987 DEBUG Processing 493/681 atomic regions from SNP 147859 to 148459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,037 DEBUG Processing 27/601 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,075 DEBUG Processing 31/565 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,104 DEBUG Processing 620/712 atomic regions from SNP 185879 to 186479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,133 DEBUG Processing 292/668 atomic regions from SNP 87555 to 88155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,181 DEBUG Processing 494/681 atomic regions from SNP 148159 to 148759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,214 DEBUG Processing 28/601 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,272 DEBUG Processing 32/565 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,319 DEBUG Processing 621/712 atomic regions from SNP 186179 to 186779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,320 DEBUG Processing 293/668 atomic regions from SNP 87855 to 88455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,378 DEBUG Processing 495/681 atomic regions from SNP 148459 to 149059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,393 DEBUG Processing 29/601 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,480 DEBUG Processing 33/565 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,508 DEBUG Processing 294/668 atomic regions from SNP 88155 to 88755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,541 DEBUG Processing 622/712 atomic regions from SNP 186479 to 187079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,571 DEBUG Processing 496/681 atomic regions from SNP 148759 to 149359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,596 DEBUG Processing 30/601 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,685 DEBUG Processing 34/565 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,692 DEBUG Processing 295/668 atomic regions from SNP 88455 to 89055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,749 DEBUG Processing 623/712 atomic regions from SNP 186779 to 187379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,766 DEBUG Processing 497/681 atomic regions from SNP 149059 to 149659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,775 DEBUG Processing 31/601 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,865 DEBUG Processing 35/565 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,879 DEBUG Processing 296/668 atomic regions from SNP 88755 to 89355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,963 DEBUG Processing 32/601 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,963 DEBUG Processing 498/681 atomic regions from SNP 149359 to 149959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,968 DEBUG Processing 624/712 atomic regions from SNP 187079 to 187679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,040 DEBUG Processing 36/565 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,069 DEBUG Processing 297/668 atomic regions from SNP 89055 to 89655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,158 DEBUG Processing 499/681 atomic regions from SNP 149659 to 150259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,164 DEBUG Processing 33/601 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,179 DEBUG Processing 625/712 atomic regions from SNP 187379 to 187979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,215 DEBUG Processing 37/565 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,259 DEBUG Processing 298/668 atomic regions from SNP 89355 to 89955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,352 DEBUG Processing 500/681 atomic regions from SNP 149959 to 150559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,355 DEBUG Processing 34/601 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,374 DEBUG Processing 626/712 atomic regions from SNP 187679 to 188279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,393 DEBUG Processing 38/565 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,447 DEBUG Processing 299/668 atomic regions from SNP 89655 to 90255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,551 DEBUG Processing 501/681 atomic regions from SNP 150259 to 150859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,554 DEBUG Processing 35/601 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,573 DEBUG Processing 627/712 atomic regions from SNP 187979 to 188579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,575 DEBUG Processing 39/565 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,638 DEBUG Processing 300/668 atomic regions from SNP 89955 to 90555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,750 DEBUG Processing 502/681 atomic regions from SNP 150559 to 151159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,759 DEBUG Processing 40/565 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,762 DEBUG Processing 36/601 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,778 DEBUG Processing 628/712 atomic regions from SNP 188279 to 188879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,830 DEBUG Processing 301/668 atomic regions from SNP 90255 to 90855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,940 DEBUG Processing 41/565 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,944 DEBUG Processing 37/601 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,952 DEBUG Processing 503/681 atomic regions from SNP 150859 to 151459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,989 DEBUG Processing 629/712 atomic regions from SNP 188579 to 189179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,017 DEBUG Processing 302/668 atomic regions from SNP 90555 to 91155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,117 DEBUG Processing 42/565 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,125 DEBUG Processing 38/601 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,146 DEBUG Processing 504/681 atomic regions from SNP 151159 to 151759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,201 DEBUG Processing 630/712 atomic regions from SNP 188879 to 189479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,204 DEBUG Processing 303/668 atomic regions from SNP 90855 to 91455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,294 DEBUG Processing 43/565 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,304 DEBUG Processing 39/601 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,341 DEBUG Processing 505/681 atomic regions from SNP 151459 to 152059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,390 DEBUG Processing 304/668 atomic regions from SNP 91155 to 91755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,394 DEBUG Processing 631/712 atomic regions from SNP 189179 to 189779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,482 DEBUG Processing 40/601 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,491 DEBUG Processing 44/565 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,537 DEBUG Processing 506/681 atomic regions from SNP 151759 to 152359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,586 DEBUG Processing 305/668 atomic regions from SNP 91455 to 92055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,592 DEBUG Processing 632/712 atomic regions from SNP 189479 to 190079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,661 DEBUG Processing 41/601 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,699 DEBUG Processing 45/565 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,757 DEBUG Processing 507/681 atomic regions from SNP 152059 to 152659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,783 DEBUG Processing 633/712 atomic regions from SNP 189779 to 190379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,798 DEBUG Processing 306/668 atomic regions from SNP 91755 to 92355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,838 DEBUG Processing 42/601 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,904 DEBUG Processing 46/565 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,962 DEBUG Processing 508/681 atomic regions from SNP 152359 to 152959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,978 DEBUG Processing 634/712 atomic regions from SNP 190079 to 190679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,004 DEBUG Processing 307/668 atomic regions from SNP 92055 to 92655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,013 DEBUG Processing 43/601 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,109 DEBUG Processing 47/565 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,173 DEBUG Processing 509/681 atomic regions from SNP 152659 to 153259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,173 DEBUG Processing 635/712 atomic regions from SNP 190379 to 190979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,194 DEBUG Processing 308/668 atomic regions from SNP 92355 to 92955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,197 DEBUG Processing 44/601 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,316 DEBUG Processing 48/565 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,377 DEBUG Processing 45/601 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,384 DEBUG Processing 309/668 atomic regions from SNP 92655 to 93255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,385 DEBUG Processing 636/712 atomic regions from SNP 190679 to 191279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,393 DEBUG Processing 510/681 atomic regions from SNP 152959 to 153559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,520 DEBUG Processing 49/565 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,557 DEBUG Processing 46/601 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,573 DEBUG Processing 310/668 atomic regions from SNP 92955 to 93555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,606 DEBUG Processing 511/681 atomic regions from SNP 153259 to 153859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,611 DEBUG Processing 637/712 atomic regions from SNP 190979 to 191579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,714 DEBUG Processing 50/565 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,737 DEBUG Processing 47/601 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,762 DEBUG Processing 311/668 atomic regions from SNP 93255 to 93855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,805 DEBUG Processing 512/681 atomic regions from SNP 153559 to 154159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,824 DEBUG Processing 638/712 atomic regions from SNP 191279 to 191879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,904 DEBUG Processing 51/565 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,915 DEBUG Processing 48/601 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,952 DEBUG Processing 312/668 atomic regions from SNP 93555 to 94155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,000 DEBUG Processing 513/681 atomic regions from SNP 153859 to 154459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,018 DEBUG Processing 639/712 atomic regions from SNP 191579 to 192179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,090 DEBUG Processing 49/601 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,096 DEBUG Processing 52/565 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,140 DEBUG Processing 313/668 atomic regions from SNP 93855 to 94455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,192 DEBUG Processing 514/681 atomic regions from SNP 154159 to 154759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,209 DEBUG Processing 640/712 atomic regions from SNP 191879 to 192479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,266 DEBUG Processing 50/601 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,283 DEBUG Processing 53/565 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,328 DEBUG Processing 314/668 atomic regions from SNP 94155 to 94755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,398 DEBUG Processing 515/681 atomic regions from SNP 154459 to 155059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,403 DEBUG Processing 641/712 atomic regions from SNP 192179 to 192779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,446 DEBUG Processing 51/601 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,459 DEBUG Processing 54/565 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,517 DEBUG Processing 315/668 atomic regions from SNP 94455 to 95055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,601 DEBUG Processing 642/712 atomic regions from SNP 192479 to 193079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,626 DEBUG Processing 516/681 atomic regions from SNP 154759 to 155359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,629 DEBUG Processing 52/601 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,641 DEBUG Processing 55/565 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,710 DEBUG Processing 316/668 atomic regions from SNP 94755 to 95355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,805 DEBUG Processing 643/712 atomic regions from SNP 192779 to 193379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,820 DEBUG Processing 56/565 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,827 DEBUG Processing 53/601 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,846 DEBUG Processing 517/681 atomic regions from SNP 155059 to 155659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,901 DEBUG Processing 317/668 atomic regions from SNP 95055 to 95655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,999 DEBUG Processing 57/565 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,000 DEBUG Processing 644/712 atomic regions from SNP 193079 to 193679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,041 DEBUG Processing 54/601 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,070 DEBUG Processing 518/681 atomic regions from SNP 155359 to 155959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,086 DEBUG Processing 318/668 atomic regions from SNP 95355 to 95955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,177 DEBUG Processing 58/565 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,197 DEBUG Processing 645/712 atomic regions from SNP 193379 to 193979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,253 DEBUG Processing 55/601 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,274 DEBUG Processing 319/668 atomic regions from SNP 95655 to 96255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,284 DEBUG Processing 519/681 atomic regions from SNP 155659 to 156259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,356 DEBUG Processing 59/565 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,399 DEBUG Processing 646/712 atomic regions from SNP 193679 to 194279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,449 DEBUG Processing 56/601 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,471 DEBUG Processing 320/668 atomic regions from SNP 95955 to 96555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,484 DEBUG Processing 520/681 atomic regions from SNP 155959 to 156559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,539 DEBUG Processing 60/565 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,598 DEBUG Processing 647/712 atomic regions from SNP 193979 to 194579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,633 DEBUG Processing 57/601 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,660 DEBUG Processing 321/668 atomic regions from SNP 96255 to 96855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,699 DEBUG Processing 521/681 atomic regions from SNP 156259 to 156859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,732 DEBUG Processing 61/565 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,798 DEBUG Processing 648/712 atomic regions from SNP 194279 to 194879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,837 DEBUG Processing 58/601 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,851 DEBUG Processing 322/668 atomic regions from SNP 96555 to 97155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,914 DEBUG Processing 522/681 atomic regions from SNP 156559 to 157159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,933 DEBUG Processing 62/565 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,994 DEBUG Processing 649/712 atomic regions from SNP 194579 to 195179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,015 DEBUG Processing 59/601 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,041 DEBUG Processing 323/668 atomic regions from SNP 96855 to 97455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,122 DEBUG Processing 523/681 atomic regions from SNP 156859 to 157459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,134 DEBUG Processing 63/565 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,189 DEBUG Processing 650/712 atomic regions from SNP 194879 to 195479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,195 DEBUG Processing 60/601 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,231 DEBUG Processing 324/668 atomic regions from SNP 97155 to 97755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,318 DEBUG Processing 524/681 atomic regions from SNP 157159 to 157759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,340 DEBUG Processing 64/565 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,371 DEBUG Processing 61/601 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,382 DEBUG Processing 651/712 atomic regions from SNP 195179 to 195779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,421 DEBUG Processing 325/668 atomic regions from SNP 97455 to 98055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,518 DEBUG Processing 525/681 atomic regions from SNP 157459 to 158059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,543 DEBUG Processing 65/565 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,550 DEBUG Processing 62/601 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,582 DEBUG Processing 652/712 atomic regions from SNP 195479 to 196079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,612 DEBUG Processing 326/668 atomic regions from SNP 97755 to 98355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,713 DEBUG Processing 526/681 atomic regions from SNP 157759 to 158359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,730 DEBUG Processing 63/601 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,735 DEBUG Processing 66/565 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,780 DEBUG Processing 653/712 atomic regions from SNP 195779 to 196379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,800 DEBUG Processing 327/668 atomic regions from SNP 98055 to 98655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,909 DEBUG Processing 527/681 atomic regions from SNP 158059 to 158659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,911 DEBUG Processing 64/601 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,944 DEBUG Processing 67/565 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,979 DEBUG Processing 654/712 atomic regions from SNP 196079 to 196679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,990 DEBUG Processing 328/668 atomic regions from SNP 98355 to 98955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,090 DEBUG Processing 65/601 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,112 DEBUG Processing 528/681 atomic regions from SNP 158359 to 158959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,148 DEBUG Processing 68/565 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,180 DEBUG Processing 655/712 atomic regions from SNP 196379 to 196979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,182 DEBUG Processing 329/668 atomic regions from SNP 98655 to 99255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,272 DEBUG Processing 66/601 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,326 DEBUG Processing 529/681 atomic regions from SNP 158659 to 159259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,335 DEBUG Processing 69/565 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,375 DEBUG Processing 330/668 atomic regions from SNP 98955 to 99555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,382 DEBUG Processing 656/712 atomic regions from SNP 196679 to 197279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,451 DEBUG Processing 67/601 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,513 DEBUG Processing 70/565 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,525 DEBUG Processing 530/681 atomic regions from SNP 158959 to 159559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,563 DEBUG Processing 331/668 atomic regions from SNP 99255 to 99855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,575 DEBUG Processing 657/712 atomic regions from SNP 196979 to 197579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,631 DEBUG Processing 68/601 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,687 DEBUG Processing 71/565 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,726 DEBUG Processing 531/681 atomic regions from SNP 159259 to 159859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,751 DEBUG Processing 332/668 atomic regions from SNP 99555 to 100155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,769 DEBUG Processing 658/712 atomic regions from SNP 197279 to 197879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,808 DEBUG Processing 69/601 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,863 DEBUG Processing 72/565 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,930 DEBUG Processing 532/681 atomic regions from SNP 159559 to 160159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,944 DEBUG Processing 333/668 atomic regions from SNP 99855 to 100455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,970 DEBUG Processing 659/712 atomic regions from SNP 197579 to 198179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,995 DEBUG Processing 70/601 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,045 DEBUG Processing 73/565 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,125 DEBUG Processing 533/681 atomic regions from SNP 159859 to 160459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,136 DEBUG Processing 334/668 atomic regions from SNP 100155 to 100755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,168 DEBUG Processing 660/712 atomic regions from SNP 197879 to 198479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,177 DEBUG Processing 71/601 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,220 DEBUG Processing 74/565 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,326 DEBUG Processing 335/668 atomic regions from SNP 100455 to 101055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,336 DEBUG Processing 534/681 atomic regions from SNP 160159 to 160759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,361 DEBUG Processing 72/601 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,367 DEBUG Processing 661/712 atomic regions from SNP 198179 to 198779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,395 DEBUG Processing 75/565 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,516 DEBUG Processing 336/668 atomic regions from SNP 100755 to 101355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,543 DEBUG Processing 73/601 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,553 DEBUG Processing 535/681 atomic regions from SNP 160459 to 161059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,565 DEBUG Processing 662/712 atomic regions from SNP 198479 to 199079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,575 DEBUG Processing 76/565 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,704 DEBUG Processing 337/668 atomic regions from SNP 101055 to 101655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,724 DEBUG Processing 74/601 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,756 DEBUG Processing 77/565 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,772 DEBUG Processing 663/712 atomic regions from SNP 198779 to 199379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,778 DEBUG Processing 536/681 atomic regions from SNP 160759 to 161359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,892 DEBUG Processing 338/668 atomic regions from SNP 101355 to 101955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,903 DEBUG Processing 75/601 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,937 DEBUG Processing 78/565 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,969 DEBUG Processing 664/712 atomic regions from SNP 199079 to 199679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,986 DEBUG Processing 537/681 atomic regions from SNP 161059 to 161659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,083 DEBUG Processing 76/601 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,095 DEBUG Processing 339/668 atomic regions from SNP 101655 to 102255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,117 DEBUG Processing 79/565 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,165 DEBUG Processing 665/712 atomic regions from SNP 199379 to 199979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,194 DEBUG Processing 538/681 atomic regions from SNP 161359 to 161959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,259 DEBUG Processing 77/601 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,295 DEBUG Processing 80/565 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,295 DEBUG Processing 340/668 atomic regions from SNP 101955 to 102555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,360 DEBUG Processing 666/712 atomic regions from SNP 199679 to 200279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,388 DEBUG Processing 539/681 atomic regions from SNP 161659 to 162259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,435 DEBUG Processing 78/601 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,476 DEBUG Processing 81/565 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,492 DEBUG Processing 341/668 atomic regions from SNP 102255 to 102855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,558 DEBUG Processing 667/712 atomic regions from SNP 199979 to 200579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,586 DEBUG Processing 540/681 atomic regions from SNP 161959 to 162559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,617 DEBUG Processing 79/601 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,662 DEBUG Processing 82/565 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,678 DEBUG Processing 342/668 atomic regions from SNP 102555 to 103155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,755 DEBUG Processing 668/712 atomic regions from SNP 200279 to 200879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,787 DEBUG Processing 541/681 atomic regions from SNP 162259 to 162859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,797 DEBUG Processing 80/601 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,865 DEBUG Processing 83/565 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,867 DEBUG Processing 343/668 atomic regions from SNP 102855 to 103455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,957 DEBUG Processing 669/712 atomic regions from SNP 200579 to 201179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,974 DEBUG Processing 81/601 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,997 DEBUG Processing 542/681 atomic regions from SNP 162559 to 163159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,055 DEBUG Processing 344/668 atomic regions from SNP 103155 to 103755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,076 DEBUG Processing 84/565 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,154 DEBUG Processing 82/601 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,160 DEBUG Processing 670/712 atomic regions from SNP 200879 to 201479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,208 DEBUG Processing 543/681 atomic regions from SNP 162859 to 163459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,246 DEBUG Processing 345/668 atomic regions from SNP 103455 to 104055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,281 DEBUG Processing 85/565 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,333 DEBUG Processing 83/601 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,363 DEBUG Processing 671/712 atomic regions from SNP 201179 to 201779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,421 DEBUG Processing 544/681 atomic regions from SNP 163159 to 163759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,436 DEBUG Processing 346/668 atomic regions from SNP 103755 to 104355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,485 DEBUG Processing 86/565 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,508 DEBUG Processing 84/601 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,588 DEBUG Processing 672/712 atomic regions from SNP 201479 to 202079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,626 DEBUG Processing 347/668 atomic regions from SNP 104055 to 104655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,647 DEBUG Processing 545/681 atomic regions from SNP 163459 to 164059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,685 DEBUG Processing 85/601 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,692 DEBUG Processing 87/565 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,813 DEBUG Processing 348/668 atomic regions from SNP 104355 to 104955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,817 DEBUG Processing 673/712 atomic regions from SNP 201779 to 202379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,864 DEBUG Processing 86/601 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,874 DEBUG Processing 546/681 atomic regions from SNP 163759 to 164359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,897 DEBUG Processing 88/565 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,002 DEBUG Processing 349/668 atomic regions from SNP 104655 to 105255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,046 DEBUG Processing 87/601 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,047 DEBUG Processing 674/712 atomic regions from SNP 202079 to 202679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,094 DEBUG Processing 547/681 atomic regions from SNP 164059 to 164659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,111 DEBUG Processing 89/565 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,193 DEBUG Processing 350/668 atomic regions from SNP 104955 to 105555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,231 DEBUG Processing 88/601 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,278 DEBUG Processing 675/712 atomic regions from SNP 202379 to 202979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,312 DEBUG Processing 548/681 atomic regions from SNP 164359 to 164959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,324 DEBUG Processing 90/565 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,382 DEBUG Processing 351/668 atomic regions from SNP 105255 to 105855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,412 DEBUG Processing 89/601 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,511 DEBUG Processing 676/712 atomic regions from SNP 202679 to 203279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,531 DEBUG Processing 549/681 atomic regions from SNP 164659 to 165259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,544 DEBUG Processing 91/565 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,573 DEBUG Processing 352/668 atomic regions from SNP 105555 to 106155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,596 DEBUG Processing 90/601 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,742 DEBUG Processing 550/681 atomic regions from SNP 164959 to 165559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,743 DEBUG Processing 677/712 atomic regions from SNP 202979 to 203579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,759 DEBUG Processing 92/565 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,764 DEBUG Processing 353/668 atomic regions from SNP 105855 to 106455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,779 DEBUG Processing 91/601 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,964 DEBUG Processing 92/601 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,968 DEBUG Processing 354/668 atomic regions from SNP 106155 to 106755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,969 DEBUG Processing 551/681 atomic regions from SNP 165259 to 165859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,972 DEBUG Processing 93/565 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,983 DEBUG Processing 678/712 atomic regions from SNP 203279 to 203879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,154 DEBUG Processing 93/601 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,164 DEBUG Processing 355/668 atomic regions from SNP 106455 to 107055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,179 DEBUG Processing 94/565 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,206 DEBUG Processing 552/681 atomic regions from SNP 165559 to 166159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,217 DEBUG Processing 679/712 atomic regions from SNP 203579 to 204179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,336 DEBUG Processing 94/601 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,359 DEBUG Processing 356/668 atomic regions from SNP 106755 to 107355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,384 DEBUG Processing 95/565 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,429 DEBUG Processing 553/681 atomic regions from SNP 165859 to 166459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,449 DEBUG Processing 680/712 atomic regions from SNP 203879 to 204479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,512 DEBUG Processing 95/601 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,549 DEBUG Processing 357/668 atomic regions from SNP 107055 to 107655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,562 DEBUG Processing 96/565 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,633 DEBUG Processing 554/681 atomic regions from SNP 166159 to 166759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,677 DEBUG Processing 681/712 atomic regions from SNP 204179 to 204779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,689 DEBUG Processing 96/601 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,737 DEBUG Processing 358/668 atomic regions from SNP 107355 to 107955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,738 DEBUG Processing 97/565 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,838 DEBUG Processing 555/681 atomic regions from SNP 166459 to 167059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,869 DEBUG Processing 97/601 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,899 DEBUG Processing 682/712 atomic regions from SNP 204479 to 205079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,915 DEBUG Processing 98/565 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,926 DEBUG Processing 359/668 atomic regions from SNP 107655 to 108255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,049 DEBUG Processing 98/601 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,060 DEBUG Processing 556/681 atomic regions from SNP 166759 to 167359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,093 DEBUG Processing 99/565 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,114 DEBUG Processing 360/668 atomic regions from SNP 107955 to 108555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,120 DEBUG Processing 683/712 atomic regions from SNP 204779 to 205379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,227 DEBUG Processing 99/601 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,271 DEBUG Processing 100/565 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,284 DEBUG Processing 557/681 atomic regions from SNP 167059 to 167659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,304 DEBUG Processing 361/668 atomic regions from SNP 108255 to 108855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,344 DEBUG Processing 684/712 atomic regions from SNP 205079 to 205679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,402 DEBUG Processing 100/601 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,449 DEBUG Processing 101/565 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,493 DEBUG Processing 362/668 atomic regions from SNP 108555 to 109155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,502 DEBUG Processing 558/681 atomic regions from SNP 167359 to 167959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,580 DEBUG Processing 685/712 atomic regions from SNP 205379 to 205979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,582 DEBUG Processing 101/601 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,638 DEBUG Processing 102/565 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,697 DEBUG Processing 363/668 atomic regions from SNP 108855 to 109455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,725 DEBUG Processing 559/681 atomic regions from SNP 167659 to 168259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,762 DEBUG Processing 102/601 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,801 DEBUG Processing 686/712 atomic regions from SNP 205679 to 206279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,826 DEBUG Processing 103/565 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,928 DEBUG Processing 364/668 atomic regions from SNP 109155 to 109755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,930 DEBUG Processing 560/681 atomic regions from SNP 167959 to 168559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,942 DEBUG Processing 103/601 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,006 DEBUG Processing 687/712 atomic regions from SNP 205979 to 206579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,038 DEBUG Processing 104/565 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,123 DEBUG Processing 104/601 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,125 DEBUG Processing 561/681 atomic regions from SNP 168259 to 168859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,149 DEBUG Processing 365/668 atomic regions from SNP 109455 to 110055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,232 DEBUG Processing 688/712 atomic regions from SNP 206279 to 206879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,248 DEBUG Processing 105/565 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,304 DEBUG Processing 105/601 atomic regions from SNP 31304 to 31905 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,325 DEBUG Processing 562/681 atomic regions from SNP 168559 to 169159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,358 DEBUG Processing 366/668 atomic regions from SNP 109755 to 110355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,436 DEBUG Processing 106/565 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,461 DEBUG Processing 689/712 atomic regions from SNP 206579 to 207179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,484 DEBUG Processing 106/601 atomic regions from SNP 31605 to 32206 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,530 DEBUG Processing 563/681 atomic regions from SNP 168859 to 169459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,577 DEBUG Processing 367/668 atomic regions from SNP 110055 to 110655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,615 DEBUG Processing 107/565 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,665 DEBUG Processing 107/601 atomic regions from SNP 31906 to 32507 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,684 DEBUG Processing 690/712 atomic regions from SNP 206879 to 207479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,748 DEBUG Processing 564/681 atomic regions from SNP 169159 to 169759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,788 DEBUG Processing 368/668 atomic regions from SNP 110355 to 110955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,812 DEBUG Processing 108/565 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,844 DEBUG Processing 108/601 atomic regions from SNP 32207 to 32808 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,906 DEBUG Processing 691/712 atomic regions from SNP 207179 to 207779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,943 DEBUG Processing 565/681 atomic regions from SNP 169459 to 170059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,993 DEBUG Processing 369/668 atomic regions from SNP 110655 to 111255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,021 DEBUG Processing 109/565 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,023 DEBUG Processing 109/601 atomic regions from SNP 32508 to 33109 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,134 DEBUG Processing 692/712 atomic regions from SNP 207479 to 208079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,155 DEBUG Processing 566/681 atomic regions from SNP 169759 to 170359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,197 DEBUG Processing 370/668 atomic regions from SNP 110955 to 111555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,202 DEBUG Processing 110/601 atomic regions from SNP 32809 to 33410 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,212 DEBUG Processing 110/565 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,370 DEBUG Processing 693/712 atomic regions from SNP 207779 to 208379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,388 DEBUG Processing 111/601 atomic regions from SNP 33110 to 33711 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,391 DEBUG Processing 567/681 atomic regions from SNP 170059 to 170659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,404 DEBUG Processing 111/565 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,405 DEBUG Processing 371/668 atomic regions from SNP 111255 to 111855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,570 DEBUG Processing 112/601 atomic regions from SNP 33411 to 34012 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,578 DEBUG Processing 694/712 atomic regions from SNP 208079 to 208679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,598 DEBUG Processing 372/668 atomic regions from SNP 111555 to 112155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,601 DEBUG Processing 112/565 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,618 DEBUG Processing 568/681 atomic regions from SNP 170359 to 170959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,750 DEBUG Processing 113/601 atomic regions from SNP 33712 to 34313 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,784 DEBUG Processing 695/712 atomic regions from SNP 208379 to 208979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,786 DEBUG Processing 373/668 atomic regions from SNP 111855 to 112455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,801 DEBUG Processing 113/565 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,816 DEBUG Processing 569/681 atomic regions from SNP 170659 to 171259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,929 DEBUG Processing 114/601 atomic regions from SNP 34013 to 34614 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,987 DEBUG Processing 374/668 atomic regions from SNP 112155 to 112755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,998 DEBUG Processing 114/565 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,008 DEBUG Processing 696/712 atomic regions from SNP 208679 to 209279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,014 DEBUG Processing 570/681 atomic regions from SNP 170959 to 171559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,108 DEBUG Processing 115/601 atomic regions from SNP 34314 to 34915 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,197 DEBUG Processing 115/565 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,209 DEBUG Processing 571/681 atomic regions from SNP 171259 to 171859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,212 DEBUG Processing 375/668 atomic regions from SNP 112455 to 113055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,230 DEBUG Processing 697/712 atomic regions from SNP 208979 to 209579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,282 DEBUG Processing 116/601 atomic regions from SNP 34615 to 35216 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,402 DEBUG Processing 116/565 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,405 DEBUG Processing 572/681 atomic regions from SNP 171559 to 172159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,424 DEBUG Processing 376/668 atomic regions from SNP 112755 to 113355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,450 DEBUG Processing 698/712 atomic regions from SNP 209279 to 209879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,458 DEBUG Processing 117/601 atomic regions from SNP 34916 to 35517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,593 DEBUG Processing 117/565 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,614 DEBUG Processing 377/668 atomic regions from SNP 113055 to 113655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,625 DEBUG Processing 573/681 atomic regions from SNP 171859 to 172459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,641 DEBUG Processing 118/601 atomic regions from SNP 35217 to 35818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,672 DEBUG Processing 699/712 atomic regions from SNP 209579 to 210179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,794 DEBUG Processing 118/565 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,804 DEBUG Processing 378/668 atomic regions from SNP 113355 to 113955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,822 DEBUG Processing 119/601 atomic regions from SNP 35518 to 36119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,847 DEBUG Processing 574/681 atomic regions from SNP 172159 to 172759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,878 DEBUG Processing 700/712 atomic regions from SNP 209879 to 210479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,994 DEBUG Processing 379/668 atomic regions from SNP 113655 to 114255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,998 DEBUG Processing 119/565 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,005 DEBUG Processing 120/601 atomic regions from SNP 35819 to 36420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,045 DEBUG Processing 575/681 atomic regions from SNP 172459 to 173059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,103 DEBUG Processing 701/712 atomic regions from SNP 210179 to 210779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,185 DEBUG Processing 121/601 atomic regions from SNP 36120 to 36721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,196 DEBUG Processing 380/668 atomic regions from SNP 113955 to 114555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,203 DEBUG Processing 120/565 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,240 DEBUG Processing 576/681 atomic regions from SNP 172759 to 173359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,333 DEBUG Processing 702/712 atomic regions from SNP 210479 to 211079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,368 DEBUG Processing 122/601 atomic regions from SNP 36421 to 37022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,382 DEBUG Processing 121/565 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,408 DEBUG Processing 381/668 atomic regions from SNP 114255 to 114855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,436 DEBUG Processing 577/681 atomic regions from SNP 173059 to 173659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,550 DEBUG Processing 123/601 atomic regions from SNP 36722 to 37323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,561 DEBUG Processing 122/565 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,562 DEBUG Processing 703/712 atomic regions from SNP 210779 to 211379 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,627 DEBUG Processing 382/668 atomic regions from SNP 114555 to 115155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,633 DEBUG Processing 578/681 atomic regions from SNP 173359 to 173959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,730 DEBUG Processing 124/601 atomic regions from SNP 37023 to 37624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,742 DEBUG Processing 123/565 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,795 DEBUG Processing 704/712 atomic regions from SNP 211079 to 211679 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,820 DEBUG Processing 383/668 atomic regions from SNP 114855 to 115455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,849 DEBUG Processing 579/681 atomic regions from SNP 173659 to 174259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,910 DEBUG Processing 125/601 atomic regions from SNP 37324 to 37925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,919 DEBUG Processing 124/565 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,014 DEBUG Processing 384/668 atomic regions from SNP 115155 to 115755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,029 DEBUG Processing 705/712 atomic regions from SNP 211379 to 211979 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,056 DEBUG Processing 580/681 atomic regions from SNP 173959 to 174559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,089 DEBUG Processing 126/601 atomic regions from SNP 37625 to 38226 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,096 DEBUG Processing 125/565 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,213 DEBUG Processing 385/668 atomic regions from SNP 115455 to 116055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,253 DEBUG Processing 581/681 atomic regions from SNP 174259 to 174859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,262 DEBUG Processing 706/712 atomic regions from SNP 211679 to 212279 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,271 DEBUG Processing 127/601 atomic regions from SNP 37926 to 38527 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,275 DEBUG Processing 126/565 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,422 DEBUG Processing 386/668 atomic regions from SNP 115755 to 116355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,453 DEBUG Processing 128/601 atomic regions from SNP 38227 to 38828 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,455 DEBUG Processing 582/681 atomic regions from SNP 174559 to 175159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,456 DEBUG Processing 127/565 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,496 DEBUG Processing 707/712 atomic regions from SNP 211979 to 212579 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,620 DEBUG Processing 387/668 atomic regions from SNP 116055 to 116655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,636 DEBUG Processing 129/601 atomic regions from SNP 38528 to 39129 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,642 DEBUG Processing 128/565 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,657 DEBUG Processing 583/681 atomic regions from SNP 174859 to 175459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,726 DEBUG Processing 708/712 atomic regions from SNP 212279 to 212879 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,816 DEBUG Processing 130/601 atomic regions from SNP 38829 to 39430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,820 DEBUG Processing 129/565 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,821 DEBUG Processing 388/668 atomic regions from SNP 116355 to 116955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,856 DEBUG Processing 584/681 atomic regions from SNP 175159 to 175759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,944 DEBUG Processing 709/712 atomic regions from SNP 212579 to 213179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,996 DEBUG Processing 131/601 atomic regions from SNP 39130 to 39731 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,000 DEBUG Processing 130/565 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,017 DEBUG Processing 389/668 atomic regions from SNP 116655 to 117255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,061 DEBUG Processing 585/681 atomic regions from SNP 175459 to 176059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,159 DEBUG Processing 710/712 atomic regions from SNP 212879 to 213479 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,174 DEBUG Processing 132/601 atomic regions from SNP 39431 to 40032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,178 DEBUG Processing 131/565 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,223 DEBUG Processing 390/668 atomic regions from SNP 116955 to 117555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,281 DEBUG Processing 586/681 atomic regions from SNP 175759 to 176359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,358 DEBUG Processing 132/565 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,359 DEBUG Processing 133/601 atomic regions from SNP 39732 to 40333 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,369 DEBUG Processing 711/712 atomic regions from SNP 213179 to 213779 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,422 DEBUG Processing 391/668 atomic regions from SNP 117255 to 117855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,504 DEBUG Processing 587/681 atomic regions from SNP 176059 to 176659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,538 DEBUG Processing 133/565 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,541 DEBUG Processing 134/601 atomic regions from SNP 40033 to 40634 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,571 DEBUG Processing 712/712 atomic regions from SNP 213479 to 214079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,610 DEBUG Processing 392/668 atomic regions from SNP 117555 to 118155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,679 DEBUG Unique SNPs positions in subchromosome 1: 214080 2025-01-31 09:56:42,720 DEBUG Processing 134/565 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,724 DEBUG Processing 135/601 atomic regions from SNP 40334 to 40935 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,726 DEBUG Processing 588/681 atomic regions from SNP 176359 to 176959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,810 DEBUG Processing 393/668 atomic regions from SNP 117855 to 118455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,900 DEBUG Processing 135/565 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,903 DEBUG Processing 136/601 atomic regions from SNP 40635 to 41236 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,918 DEBUG Processing 589/681 atomic regions from SNP 176659 to 177259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,019 DEBUG Processing 394/668 atomic regions from SNP 118155 to 118755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,079 DEBUG Processing 136/565 atomic regions from SNP 40635 to 41236 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,081 DEBUG Processing 137/601 atomic regions from SNP 40936 to 41537 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,114 DEBUG Processing 590/681 atomic regions from SNP 176959 to 177559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,207 DEBUG Processing 395/668 atomic regions from SNP 118455 to 119055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,256 DEBUG Processing 137/565 atomic regions from SNP 40936 to 41537 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,260 DEBUG Processing 138/601 atomic regions from SNP 41237 to 41838 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,309 DEBUG Processing 591/681 atomic regions from SNP 177259 to 177859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,399 DEBUG Processing 396/668 atomic regions from SNP 118755 to 119355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,434 DEBUG Processing 138/565 atomic regions from SNP 41237 to 41838 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,439 DEBUG Processing 139/601 atomic regions from SNP 41538 to 42139 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,506 DEBUG Processing 592/681 atomic regions from SNP 177559 to 178159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,584 DEBUG Processing 397/668 atomic regions from SNP 119055 to 119655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,609 DEBUG Processing 139/565 atomic regions from SNP 41538 to 42139 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,616 DEBUG Processing 140/601 atomic regions from SNP 41839 to 42440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,706 DEBUG Processing 593/681 atomic regions from SNP 177859 to 178459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,771 DEBUG Processing 398/668 atomic regions from SNP 119355 to 119955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,785 DEBUG Processing 140/565 atomic regions from SNP 41839 to 42440 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,792 DEBUG Processing 141/601 atomic regions from SNP 42140 to 42741 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,898 DEBUG Processing 594/681 atomic regions from SNP 178159 to 178759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,963 DEBUG Processing 399/668 atomic regions from SNP 119655 to 120255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,967 DEBUG Processing 141/565 atomic regions from SNP 42140 to 42741 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,983 DEBUG Processing 142/601 atomic regions from SNP 42441 to 43042 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,093 DEBUG Processing 595/681 atomic regions from SNP 178459 to 179059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,142 DEBUG Processing 142/565 atomic regions from SNP 42441 to 43042 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,152 DEBUG Processing 400/668 atomic regions from SNP 119955 to 120555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,191 DEBUG Processing 143/601 atomic regions from SNP 42742 to 43343 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,286 DEBUG Processing 596/681 atomic regions from SNP 178759 to 179359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,316 DEBUG Processing 143/565 atomic regions from SNP 42742 to 43343 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,339 DEBUG Processing 401/668 atomic regions from SNP 120255 to 120855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,385 DEBUG Processing 144/601 atomic regions from SNP 43043 to 43644 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,478 DEBUG Processing 597/681 atomic regions from SNP 179059 to 179659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,491 DEBUG Processing 144/565 atomic regions from SNP 43043 to 43644 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,530 DEBUG Processing 402/668 atomic regions from SNP 120555 to 121155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,564 DEBUG Processing 145/601 atomic regions from SNP 43344 to 43945 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,670 DEBUG Processing 145/565 atomic regions from SNP 43344 to 43945 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,675 DEBUG Processing 598/681 atomic regions from SNP 179359 to 179959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,729 DEBUG Processing 403/668 atomic regions from SNP 120855 to 121455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,740 DEBUG Processing 146/601 atomic regions from SNP 43645 to 44246 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,844 DEBUG Processing 146/565 atomic regions from SNP 43645 to 44246 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,868 DEBUG Processing 599/681 atomic regions from SNP 179659 to 180259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,915 DEBUG Processing 147/601 atomic regions from SNP 43946 to 44547 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,937 DEBUG Processing 404/668 atomic regions from SNP 121155 to 121755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,021 DEBUG Processing 147/565 atomic regions from SNP 43946 to 44547 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,062 DEBUG Processing 600/681 atomic regions from SNP 179959 to 180559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,093 DEBUG Processing 148/601 atomic regions from SNP 44247 to 44848 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,128 DEBUG Processing 405/668 atomic regions from SNP 121455 to 122055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,198 DEBUG Processing 148/565 atomic regions from SNP 44247 to 44848 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,261 DEBUG Processing 601/681 atomic regions from SNP 180259 to 180859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,275 DEBUG Processing 149/601 atomic regions from SNP 44548 to 45149 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,325 DEBUG Processing 406/668 atomic regions from SNP 121755 to 122355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,378 DEBUG Processing 149/565 atomic regions from SNP 44548 to 45149 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,454 DEBUG Processing 150/601 atomic regions from SNP 44849 to 45450 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,456 DEBUG Processing 602/681 atomic regions from SNP 180559 to 181159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,532 DEBUG Processing 407/668 atomic regions from SNP 122055 to 122655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,557 DEBUG Processing 150/565 atomic regions from SNP 44849 to 45450 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,635 DEBUG Processing 151/601 atomic regions from SNP 45150 to 45751 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,655 DEBUG Processing 603/681 atomic regions from SNP 180859 to 181459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,731 DEBUG Processing 151/565 atomic regions from SNP 45150 to 45751 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,755 DEBUG Processing 408/668 atomic regions from SNP 122355 to 122955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,813 DEBUG Processing 152/601 atomic regions from SNP 45451 to 46052 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,863 DEBUG Processing 604/681 atomic regions from SNP 181159 to 181759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,907 DEBUG Processing 152/565 atomic regions from SNP 45451 to 46052 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,975 DEBUG Processing 409/668 atomic regions from SNP 122655 to 123255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,991 DEBUG Processing 153/601 atomic regions from SNP 45752 to 46353 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,082 DEBUG Processing 605/681 atomic regions from SNP 181459 to 182059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,084 DEBUG Processing 153/565 atomic regions from SNP 45752 to 46353 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,167 DEBUG Processing 154/601 atomic regions from SNP 46053 to 46654 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,201 DEBUG Processing 410/668 atomic regions from SNP 122955 to 123555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,261 DEBUG Processing 154/565 atomic regions from SNP 46053 to 46654 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,294 DEBUG Processing 606/681 atomic regions from SNP 181759 to 182359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,343 DEBUG Processing 155/601 atomic regions from SNP 46354 to 46955 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,424 DEBUG Processing 411/668 atomic regions from SNP 123255 to 123855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,437 DEBUG Processing 155/565 atomic regions from SNP 46354 to 46955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,490 DEBUG Processing 607/681 atomic regions from SNP 182059 to 182659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,526 DEBUG Processing 156/601 atomic regions from SNP 46655 to 47256 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,616 DEBUG Processing 156/565 atomic regions from SNP 46655 to 47256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,646 DEBUG Processing 412/668 atomic regions from SNP 123555 to 124155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,682 DEBUG Processing 608/681 atomic regions from SNP 182359 to 182959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,701 DEBUG Processing 157/601 atomic regions from SNP 46956 to 47557 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,792 DEBUG Processing 157/565 atomic regions from SNP 46956 to 47557 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,850 DEBUG Processing 413/668 atomic regions from SNP 123855 to 124455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,875 DEBUG Processing 609/681 atomic regions from SNP 182659 to 183259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,877 DEBUG Processing 158/601 atomic regions from SNP 47257 to 47858 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,966 DEBUG Processing 158/565 atomic regions from SNP 47257 to 47858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,039 DEBUG Processing 414/668 atomic regions from SNP 124155 to 124755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,054 DEBUG Processing 159/601 atomic regions from SNP 47558 to 48159 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,067 DEBUG Processing 610/681 atomic regions from SNP 182959 to 183559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,139 DEBUG Processing 159/565 atomic regions from SNP 47558 to 48159 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,226 DEBUG Processing 415/668 atomic regions from SNP 124455 to 125055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,231 DEBUG Processing 160/601 atomic regions from SNP 47859 to 48460 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,276 DEBUG Processing 611/681 atomic regions from SNP 183259 to 183859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,315 DEBUG Processing 160/565 atomic regions from SNP 47859 to 48460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,407 DEBUG Processing 161/601 atomic regions from SNP 48160 to 48761 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,414 DEBUG Processing 416/668 atomic regions from SNP 124755 to 125355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,484 DEBUG Processing 612/681 atomic regions from SNP 183559 to 184159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,490 DEBUG Processing 161/565 atomic regions from SNP 48160 to 48761 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,585 DEBUG Processing 162/601 atomic regions from SNP 48461 to 49062 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,602 DEBUG Processing 417/668 atomic regions from SNP 125055 to 125655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,672 DEBUG Processing 162/565 atomic regions from SNP 48461 to 49062 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,701 DEBUG Processing 613/681 atomic regions from SNP 183859 to 184459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,761 DEBUG Processing 163/601 atomic regions from SNP 48762 to 49363 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,791 DEBUG Processing 418/668 atomic regions from SNP 125355 to 125955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,863 DEBUG Processing 163/565 atomic regions from SNP 48762 to 49363 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,894 DEBUG Processing 614/681 atomic regions from SNP 184159 to 184759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,935 DEBUG Processing 164/601 atomic regions from SNP 49063 to 49664 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,980 DEBUG Processing 419/668 atomic regions from SNP 125655 to 126255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,049 DEBUG Processing 164/565 atomic regions from SNP 49063 to 49664 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,085 DEBUG Processing 615/681 atomic regions from SNP 184459 to 185059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,111 DEBUG Processing 165/601 atomic regions from SNP 49364 to 49965 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,172 DEBUG Processing 420/668 atomic regions from SNP 125955 to 126555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,257 DEBUG Processing 165/565 atomic regions from SNP 49364 to 49965 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,279 DEBUG Processing 616/681 atomic regions from SNP 184759 to 185359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,301 DEBUG Processing 166/601 atomic regions from SNP 49665 to 50266 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,361 DEBUG Processing 421/668 atomic regions from SNP 126255 to 126855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,441 DEBUG Processing 166/565 atomic regions from SNP 49665 to 50266 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,471 DEBUG Processing 617/681 atomic regions from SNP 185059 to 185659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,507 DEBUG Processing 167/601 atomic regions from SNP 49966 to 50567 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,549 DEBUG Processing 422/668 atomic regions from SNP 126555 to 127155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,633 DEBUG Processing 167/565 atomic regions from SNP 49966 to 50567 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,665 DEBUG Processing 618/681 atomic regions from SNP 185359 to 185959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,697 DEBUG Processing 168/601 atomic regions from SNP 50267 to 50868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,751 DEBUG Processing 423/668 atomic regions from SNP 126855 to 127455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,828 DEBUG Processing 168/565 atomic regions from SNP 50267 to 50868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,854 DEBUG Processing 619/681 atomic regions from SNP 185659 to 186259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,872 DEBUG Processing 169/601 atomic regions from SNP 50568 to 51169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,963 DEBUG Processing 424/668 atomic regions from SNP 127155 to 127755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,026 DEBUG Processing 169/565 atomic regions from SNP 50568 to 51169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,045 DEBUG Processing 620/681 atomic regions from SNP 185959 to 186559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,049 DEBUG Processing 170/601 atomic regions from SNP 50869 to 51470 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,162 DEBUG Processing 425/668 atomic regions from SNP 127455 to 128055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,226 DEBUG Processing 170/565 atomic regions from SNP 50869 to 51470 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,232 DEBUG Processing 171/601 atomic regions from SNP 51170 to 51771 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,256 DEBUG Processing 621/681 atomic regions from SNP 186259 to 186859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,364 DEBUG Processing 426/668 atomic regions from SNP 127755 to 128355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,409 DEBUG Processing 172/601 atomic regions from SNP 51471 to 52072 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,421 DEBUG Processing 171/565 atomic regions from SNP 51170 to 51771 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,469 DEBUG Processing 622/681 atomic regions from SNP 186559 to 187159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,551 DEBUG Processing 427/668 atomic regions from SNP 128055 to 128655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,584 DEBUG Processing 173/601 atomic regions from SNP 51772 to 52373 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,612 DEBUG Processing 172/565 atomic regions from SNP 51471 to 52072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,684 DEBUG Processing 623/681 atomic regions from SNP 186859 to 187459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,739 DEBUG Processing 428/668 atomic regions from SNP 128355 to 128955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,757 DEBUG Processing 174/601 atomic regions from SNP 52073 to 52674 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,800 DEBUG Processing 173/565 atomic regions from SNP 51772 to 52373 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,877 DEBUG Processing 624/681 atomic regions from SNP 187159 to 187759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,935 DEBUG Processing 175/601 atomic regions from SNP 52374 to 52975 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,936 DEBUG Processing 429/668 atomic regions from SNP 128655 to 129255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,004 DEBUG Processing 174/565 atomic regions from SNP 52073 to 52674 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,067 DEBUG Processing 625/681 atomic regions from SNP 187459 to 188059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,110 DEBUG Processing 176/601 atomic regions from SNP 52675 to 53276 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,139 DEBUG Processing 430/668 atomic regions from SNP 128955 to 129555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,205 DEBUG Processing 175/565 atomic regions from SNP 52374 to 52975 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,257 DEBUG Processing 626/681 atomic regions from SNP 187759 to 188359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,286 DEBUG Processing 177/601 atomic regions from SNP 52976 to 53577 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,354 DEBUG Processing 431/668 atomic regions from SNP 129255 to 129855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,406 DEBUG Processing 176/565 atomic regions from SNP 52675 to 53276 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,447 DEBUG Processing 627/681 atomic regions from SNP 188059 to 188659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,458 DEBUG Processing 178/601 atomic regions from SNP 53277 to 53878 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,572 DEBUG Processing 432/668 atomic regions from SNP 129555 to 130155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,618 DEBUG Processing 177/565 atomic regions from SNP 52976 to 53577 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,635 DEBUG Processing 179/601 atomic regions from SNP 53578 to 54179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,637 DEBUG Processing 628/681 atomic regions from SNP 188359 to 188959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,783 DEBUG Processing 433/668 atomic regions from SNP 129855 to 130455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,811 DEBUG Processing 180/601 atomic regions from SNP 53879 to 54479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,825 DEBUG Processing 178/565 atomic regions from SNP 53277 to 53878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,829 DEBUG Processing 629/681 atomic regions from SNP 188659 to 189259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,987 DEBUG Processing 181/601 atomic regions from SNP 54179 to 54779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,003 DEBUG Processing 434/668 atomic regions from SNP 130155 to 130755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,021 DEBUG Processing 630/681 atomic regions from SNP 188959 to 189559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,028 DEBUG Processing 179/565 atomic regions from SNP 53578 to 54179 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,162 DEBUG Processing 182/601 atomic regions from SNP 54479 to 55079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,213 DEBUG Processing 631/681 atomic regions from SNP 189259 to 189859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,226 DEBUG Processing 435/668 atomic regions from SNP 130455 to 131055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,230 DEBUG Processing 180/565 atomic regions from SNP 53879 to 54480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,354 DEBUG Processing 183/601 atomic regions from SNP 54779 to 55379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,423 DEBUG Processing 632/681 atomic regions from SNP 189559 to 190159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,430 DEBUG Processing 181/565 atomic regions from SNP 54180 to 54781 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,440 DEBUG Processing 436/668 atomic regions from SNP 130755 to 131355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,547 DEBUG Processing 184/601 atomic regions from SNP 55079 to 55679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,628 DEBUG Processing 182/565 atomic regions from SNP 54481 to 55082 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,639 DEBUG Processing 633/681 atomic regions from SNP 189859 to 190459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,652 DEBUG Processing 437/668 atomic regions from SNP 131055 to 131655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,722 DEBUG Processing 185/601 atomic regions from SNP 55379 to 55979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,821 DEBUG Processing 183/565 atomic regions from SNP 54782 to 55383 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,840 DEBUG Processing 438/668 atomic regions from SNP 131355 to 131955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,865 DEBUG Processing 634/681 atomic regions from SNP 190159 to 190759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,896 DEBUG Processing 186/601 atomic regions from SNP 55679 to 56279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,997 DEBUG Processing 184/565 atomic regions from SNP 55083 to 55684 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,029 DEBUG Processing 439/668 atomic regions from SNP 131655 to 132255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,072 DEBUG Processing 187/601 atomic regions from SNP 55979 to 56579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,088 DEBUG Processing 635/681 atomic regions from SNP 190459 to 191059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,168 DEBUG Processing 185/565 atomic regions from SNP 55384 to 55985 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,217 DEBUG Processing 440/668 atomic regions from SNP 131955 to 132555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,262 DEBUG Processing 188/601 atomic regions from SNP 56279 to 56879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,301 DEBUG Processing 636/681 atomic regions from SNP 190759 to 191359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,357 DEBUG Processing 186/565 atomic regions from SNP 55685 to 56286 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,412 DEBUG Processing 441/668 atomic regions from SNP 132255 to 132855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,458 DEBUG Processing 189/601 atomic regions from SNP 56579 to 57179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,511 DEBUG Processing 637/681 atomic regions from SNP 191059 to 191659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,549 DEBUG Processing 187/565 atomic regions from SNP 55986 to 56587 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,601 DEBUG Processing 442/668 atomic regions from SNP 132555 to 133155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,632 DEBUG Processing 190/601 atomic regions from SNP 56879 to 57479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,717 DEBUG Processing 638/681 atomic regions from SNP 191359 to 191959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,724 DEBUG Processing 188/565 atomic regions from SNP 56287 to 56888 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,791 DEBUG Processing 443/668 atomic regions from SNP 132855 to 133455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,809 DEBUG Processing 191/601 atomic regions from SNP 57179 to 57779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,899 DEBUG Processing 189/565 atomic regions from SNP 56588 to 57189 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,933 DEBUG Processing 639/681 atomic regions from SNP 191659 to 192259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,979 DEBUG Processing 444/668 atomic regions from SNP 133155 to 133755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,985 DEBUG Processing 192/601 atomic regions from SNP 57479 to 58079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,074 DEBUG Processing 190/565 atomic regions from SNP 56889 to 57490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,156 DEBUG Processing 640/681 atomic regions from SNP 191959 to 192559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,172 DEBUG Processing 193/601 atomic regions from SNP 57779 to 58379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,180 DEBUG Processing 445/668 atomic regions from SNP 133455 to 134055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,250 DEBUG Processing 191/565 atomic regions from SNP 57190 to 57791 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,368 DEBUG Processing 446/668 atomic regions from SNP 133755 to 134355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,376 DEBUG Processing 194/601 atomic regions from SNP 58079 to 58679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,380 DEBUG Processing 641/681 atomic regions from SNP 192259 to 192859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,425 DEBUG Processing 192/565 atomic regions from SNP 57491 to 58092 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,556 DEBUG Processing 447/668 atomic regions from SNP 134055 to 134655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,582 DEBUG Processing 195/601 atomic regions from SNP 58379 to 58979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,586 DEBUG Processing 642/681 atomic regions from SNP 192559 to 193159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,607 DEBUG Processing 193/565 atomic regions from SNP 57792 to 58393 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,744 DEBUG Processing 448/668 atomic regions from SNP 134355 to 134955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,779 DEBUG Processing 643/681 atomic regions from SNP 192859 to 193459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,791 DEBUG Processing 194/565 atomic regions from SNP 58093 to 58694 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,793 DEBUG Processing 196/601 atomic regions from SNP 58679 to 59279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,943 DEBUG Processing 449/668 atomic regions from SNP 134655 to 135255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,972 DEBUG Processing 644/681 atomic regions from SNP 193159 to 193759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,980 DEBUG Processing 195/565 atomic regions from SNP 58394 to 58995 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,008 DEBUG Processing 197/601 atomic regions from SNP 58979 to 59579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,155 DEBUG Processing 450/668 atomic regions from SNP 134955 to 135555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,167 DEBUG Processing 645/681 atomic regions from SNP 193459 to 194059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,174 DEBUG Processing 196/565 atomic regions from SNP 58695 to 59296 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,218 DEBUG Processing 198/601 atomic regions from SNP 59279 to 59879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,366 DEBUG Processing 197/565 atomic regions from SNP 58996 to 59597 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,368 DEBUG Processing 451/668 atomic regions from SNP 135255 to 135855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,374 DEBUG Processing 646/681 atomic regions from SNP 193759 to 194359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,418 DEBUG Processing 199/601 atomic regions from SNP 59579 to 60179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,564 DEBUG Processing 198/565 atomic regions from SNP 59297 to 59898 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,593 DEBUG Processing 452/668 atomic regions from SNP 135555 to 136155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,594 DEBUG Processing 647/681 atomic regions from SNP 194059 to 194659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,601 DEBUG Processing 200/601 atomic regions from SNP 59879 to 60479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,769 DEBUG Processing 199/565 atomic regions from SNP 59598 to 60199 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,780 DEBUG Processing 201/601 atomic regions from SNP 60179 to 60779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,791 DEBUG Processing 648/681 atomic regions from SNP 194359 to 194959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,815 DEBUG Processing 453/668 atomic regions from SNP 135855 to 136455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,952 DEBUG Processing 200/565 atomic regions from SNP 59899 to 60500 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,958 DEBUG Processing 202/601 atomic regions from SNP 60479 to 61079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,986 DEBUG Processing 649/681 atomic regions from SNP 194659 to 195259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,027 DEBUG Processing 454/668 atomic regions from SNP 136155 to 136755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,132 DEBUG Processing 201/565 atomic regions from SNP 60200 to 60801 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,135 DEBUG Processing 203/601 atomic regions from SNP 60779 to 61379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,179 DEBUG Processing 650/681 atomic regions from SNP 194959 to 195559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,236 DEBUG Processing 455/668 atomic regions from SNP 136455 to 137055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,311 DEBUG Processing 202/565 atomic regions from SNP 60501 to 61102 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,314 DEBUG Processing 204/601 atomic regions from SNP 61079 to 61679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,372 DEBUG Processing 651/681 atomic regions from SNP 195259 to 195859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,451 DEBUG Processing 456/668 atomic regions from SNP 136755 to 137355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,488 DEBUG Processing 203/565 atomic regions from SNP 60802 to 61403 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,507 DEBUG Processing 205/601 atomic regions from SNP 61379 to 61979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,563 DEBUG Processing 652/681 atomic regions from SNP 195559 to 196159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,677 DEBUG Processing 457/668 atomic regions from SNP 137055 to 137655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,679 DEBUG Processing 204/565 atomic regions from SNP 61103 to 61704 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,706 DEBUG Processing 206/601 atomic regions from SNP 61679 to 62279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,754 DEBUG Processing 653/681 atomic regions from SNP 195859 to 196459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,864 DEBUG Processing 205/565 atomic regions from SNP 61404 to 62005 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,893 DEBUG Processing 458/668 atomic regions from SNP 137355 to 137955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,906 DEBUG Processing 207/601 atomic regions from SNP 61979 to 62579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,945 DEBUG Processing 654/681 atomic regions from SNP 196159 to 196759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,046 DEBUG Processing 206/565 atomic regions from SNP 61705 to 62306 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,108 DEBUG Processing 459/668 atomic regions from SNP 137655 to 138255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,120 DEBUG Processing 208/601 atomic regions from SNP 62279 to 62879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,138 DEBUG Processing 655/681 atomic regions from SNP 196459 to 197059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,217 DEBUG Processing 207/565 atomic regions from SNP 62006 to 62607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,322 DEBUG Processing 209/601 atomic regions from SNP 62579 to 63179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,326 DEBUG Processing 460/668 atomic regions from SNP 137955 to 138555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,329 DEBUG Processing 656/681 atomic regions from SNP 196759 to 197359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,391 DEBUG Processing 208/565 atomic regions from SNP 62307 to 62908 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,513 DEBUG Processing 210/601 atomic regions from SNP 62879 to 63479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,524 DEBUG Processing 657/681 atomic regions from SNP 197059 to 197659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,545 DEBUG Processing 461/668 atomic regions from SNP 138255 to 138855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,589 DEBUG Processing 209/565 atomic regions from SNP 62608 to 63209 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,693 DEBUG Processing 211/601 atomic regions from SNP 63179 to 63779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,718 DEBUG Processing 658/681 atomic regions from SNP 197359 to 197959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,760 DEBUG Processing 462/668 atomic regions from SNP 138555 to 139155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,791 DEBUG Processing 210/565 atomic regions from SNP 62909 to 63510 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,869 DEBUG Processing 212/601 atomic regions from SNP 63479 to 64079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,910 DEBUG Processing 659/681 atomic regions from SNP 197659 to 198259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,985 DEBUG Processing 463/668 atomic regions from SNP 138855 to 139455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,995 DEBUG Processing 211/565 atomic regions from SNP 63210 to 63811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,042 DEBUG Processing 213/601 atomic regions from SNP 63779 to 64379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,102 DEBUG Processing 660/681 atomic regions from SNP 197959 to 198559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,197 DEBUG Processing 212/565 atomic regions from SNP 63511 to 64112 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,206 DEBUG Processing 464/668 atomic regions from SNP 139155 to 139755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,219 DEBUG Processing 214/601 atomic regions from SNP 64079 to 64679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,296 DEBUG Processing 661/681 atomic regions from SNP 198259 to 198859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,390 DEBUG Processing 213/565 atomic regions from SNP 63812 to 64413 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,395 DEBUG Processing 215/601 atomic regions from SNP 64379 to 64979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,419 DEBUG Processing 465/668 atomic regions from SNP 139455 to 140055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,486 DEBUG Processing 662/681 atomic regions from SNP 198559 to 199159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,569 DEBUG Processing 216/601 atomic regions from SNP 64679 to 65279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,590 DEBUG Processing 214/565 atomic regions from SNP 64113 to 64714 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,621 DEBUG Processing 466/668 atomic regions from SNP 139755 to 140355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,676 DEBUG Processing 663/681 atomic regions from SNP 198859 to 199459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,743 DEBUG Processing 217/601 atomic regions from SNP 64979 to 65579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,792 DEBUG Processing 215/565 atomic regions from SNP 64414 to 65015 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,822 DEBUG Processing 467/668 atomic regions from SNP 140055 to 140655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,868 DEBUG Processing 664/681 atomic regions from SNP 199159 to 199759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,920 DEBUG Processing 218/601 atomic regions from SNP 65279 to 65879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,998 DEBUG Processing 216/565 atomic regions from SNP 64715 to 65316 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,028 DEBUG Processing 468/668 atomic regions from SNP 140355 to 140955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,062 DEBUG Processing 665/681 atomic regions from SNP 199459 to 200059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,095 DEBUG Processing 219/601 atomic regions from SNP 65579 to 66179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,170 DEBUG Processing 217/565 atomic regions from SNP 65016 to 65617 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,240 DEBUG Processing 469/668 atomic regions from SNP 140655 to 141255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,254 DEBUG Processing 666/681 atomic regions from SNP 199759 to 200359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,269 DEBUG Processing 220/601 atomic regions from SNP 65879 to 66479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,342 DEBUG Processing 218/565 atomic regions from SNP 65317 to 65918 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,447 DEBUG Processing 221/601 atomic regions from SNP 66179 to 66779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,448 DEBUG Processing 667/681 atomic regions from SNP 200059 to 200659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,455 DEBUG Processing 470/668 atomic regions from SNP 140955 to 141555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,517 DEBUG Processing 219/565 atomic regions from SNP 65618 to 66219 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,623 DEBUG Processing 222/601 atomic regions from SNP 66479 to 67079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,642 DEBUG Processing 668/681 atomic regions from SNP 200359 to 200959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,656 DEBUG Processing 471/668 atomic regions from SNP 141255 to 141855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,693 DEBUG Processing 220/565 atomic regions from SNP 65919 to 66520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,800 DEBUG Processing 223/601 atomic regions from SNP 66779 to 67379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,836 DEBUG Processing 669/681 atomic regions from SNP 200659 to 201259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,856 DEBUG Processing 472/668 atomic regions from SNP 141555 to 142155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,868 DEBUG Processing 221/565 atomic regions from SNP 66220 to 66821 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,973 DEBUG Processing 224/601 atomic regions from SNP 67079 to 67679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,029 DEBUG Processing 670/681 atomic regions from SNP 200959 to 201559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,044 DEBUG Processing 222/565 atomic regions from SNP 66521 to 67122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,077 DEBUG Processing 473/668 atomic regions from SNP 141855 to 142455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,149 DEBUG Processing 225/601 atomic regions from SNP 67379 to 67979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,226 DEBUG Processing 223/565 atomic regions from SNP 66822 to 67422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,231 DEBUG Processing 671/681 atomic regions from SNP 201259 to 201859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,306 DEBUG Processing 474/668 atomic regions from SNP 142155 to 142755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,326 DEBUG Processing 226/601 atomic regions from SNP 67679 to 68279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,401 DEBUG Processing 224/565 atomic regions from SNP 67122 to 67722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,426 DEBUG Processing 672/681 atomic regions from SNP 201559 to 202159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,500 DEBUG Processing 227/601 atomic regions from SNP 67979 to 68579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,529 DEBUG Processing 475/668 atomic regions from SNP 142455 to 143055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,576 DEBUG Processing 225/565 atomic regions from SNP 67422 to 68022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,617 DEBUG Processing 673/681 atomic regions from SNP 201859 to 202459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,674 DEBUG Processing 228/601 atomic regions from SNP 68279 to 68879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,749 DEBUG Processing 226/565 atomic regions from SNP 67722 to 68322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,752 DEBUG Processing 476/668 atomic regions from SNP 142755 to 143355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,809 DEBUG Processing 674/681 atomic regions from SNP 202159 to 202759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,849 DEBUG Processing 229/601 atomic regions from SNP 68579 to 69179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,926 DEBUG Processing 227/565 atomic regions from SNP 68022 to 68622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,968 DEBUG Processing 477/668 atomic regions from SNP 143055 to 143655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,002 DEBUG Processing 675/681 atomic regions from SNP 202459 to 203059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,024 DEBUG Processing 230/601 atomic regions from SNP 68879 to 69479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,101 DEBUG Processing 228/565 atomic regions from SNP 68322 to 68922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,166 DEBUG Processing 478/668 atomic regions from SNP 143355 to 143955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,194 DEBUG Processing 676/681 atomic regions from SNP 202759 to 203359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,201 DEBUG Processing 231/601 atomic regions from SNP 69179 to 69779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,272 DEBUG Processing 229/565 atomic regions from SNP 68622 to 69222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,354 DEBUG Processing 479/668 atomic regions from SNP 143655 to 144255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,377 DEBUG Processing 232/601 atomic regions from SNP 69479 to 70079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,388 DEBUG Processing 677/681 atomic regions from SNP 203059 to 203659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,450 DEBUG Processing 230/565 atomic regions from SNP 68922 to 69522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,555 DEBUG Processing 480/668 atomic regions from SNP 143955 to 144555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,560 DEBUG Processing 233/601 atomic regions from SNP 69779 to 70379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,588 DEBUG Processing 678/681 atomic regions from SNP 203359 to 203959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,627 DEBUG Processing 231/565 atomic regions from SNP 69222 to 69822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,741 DEBUG Processing 234/601 atomic regions from SNP 70079 to 70679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,747 DEBUG Processing 481/668 atomic regions from SNP 144255 to 144855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,785 DEBUG Processing 679/681 atomic regions from SNP 203659 to 204259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,804 DEBUG Processing 232/565 atomic regions from SNP 69522 to 70122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,916 DEBUG Processing 235/601 atomic regions from SNP 70379 to 70979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,939 DEBUG Processing 482/668 atomic regions from SNP 144555 to 145155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,979 DEBUG Processing 233/565 atomic regions from SNP 69822 to 70422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,999 DEBUG Processing 680/681 atomic regions from SNP 203959 to 204559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,090 DEBUG Processing 236/601 atomic regions from SNP 70679 to 71279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,128 DEBUG Processing 483/668 atomic regions from SNP 144855 to 145455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,154 DEBUG Processing 234/565 atomic regions from SNP 70122 to 70722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,218 DEBUG Processing 681/681 atomic regions from SNP 204259 to 204859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,264 DEBUG Processing 237/601 atomic regions from SNP 70979 to 71579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,317 DEBUG Processing 484/668 atomic regions from SNP 145155 to 145755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,327 DEBUG Processing 235/565 atomic regions from SNP 70422 to 71022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,351 DEBUG Unique SNPs positions in subchromosome 1: 204860 2025-01-31 09:57:01,439 DEBUG Processing 238/601 atomic regions from SNP 71279 to 71879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,501 DEBUG Processing 236/565 atomic regions from SNP 70722 to 71322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,507 DEBUG Processing 485/668 atomic regions from SNP 145455 to 146055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,610 DEBUG Processing 239/601 atomic regions from SNP 71579 to 72179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,673 DEBUG Processing 237/565 atomic regions from SNP 71022 to 71622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,694 DEBUG Processing 486/668 atomic regions from SNP 145755 to 146355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,786 DEBUG Processing 240/601 atomic regions from SNP 71879 to 72479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,849 DEBUG Processing 238/565 atomic regions from SNP 71322 to 71922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,887 DEBUG Processing 487/668 atomic regions from SNP 146055 to 146655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,959 DEBUG Processing 241/601 atomic regions from SNP 72179 to 72779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,020 DEBUG Processing 239/565 atomic regions from SNP 71622 to 72222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,073 DEBUG Processing 488/668 atomic regions from SNP 146355 to 146955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,137 DEBUG Processing 242/601 atomic regions from SNP 72479 to 73079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,192 DEBUG Processing 240/565 atomic regions from SNP 71922 to 72522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,262 DEBUG Processing 489/668 atomic regions from SNP 146655 to 147255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,339 DEBUG Processing 243/601 atomic regions from SNP 72779 to 73379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,365 DEBUG Processing 241/565 atomic regions from SNP 72222 to 72822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,452 DEBUG Processing 490/668 atomic regions from SNP 146955 to 147555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,529 DEBUG Processing 244/601 atomic regions from SNP 73079 to 73679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,536 DEBUG Processing 242/565 atomic regions from SNP 72522 to 73122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,644 DEBUG Processing 491/668 atomic regions from SNP 147255 to 147855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,709 DEBUG Processing 245/601 atomic regions from SNP 73379 to 73979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,712 DEBUG Processing 243/565 atomic regions from SNP 72822 to 73422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,834 DEBUG Processing 492/668 atomic regions from SNP 147555 to 148155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,887 DEBUG Processing 246/601 atomic regions from SNP 73679 to 74279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,888 DEBUG Processing 244/565 atomic regions from SNP 73122 to 73722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,028 DEBUG Processing 493/668 atomic regions from SNP 147855 to 148455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,064 DEBUG Processing 245/565 atomic regions from SNP 73422 to 74022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,067 DEBUG Processing 247/601 atomic regions from SNP 73979 to 74579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,219 DEBUG Processing 494/668 atomic regions from SNP 148155 to 148755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,238 DEBUG Processing 246/565 atomic regions from SNP 73722 to 74322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,245 DEBUG Processing 248/601 atomic regions from SNP 74279 to 74879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,409 DEBUG Processing 495/668 atomic regions from SNP 148455 to 149055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,416 DEBUG Processing 247/565 atomic regions from SNP 74022 to 74622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,421 DEBUG Processing 249/601 atomic regions from SNP 74579 to 75179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,597 DEBUG Processing 496/668 atomic regions from SNP 148755 to 149355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,597 DEBUG Processing 250/601 atomic regions from SNP 74879 to 75479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,598 DEBUG Processing 248/565 atomic regions from SNP 74322 to 74922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,774 DEBUG Processing 251/601 atomic regions from SNP 75179 to 75779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,788 DEBUG Processing 249/565 atomic regions from SNP 74622 to 75222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,792 DEBUG Processing 497/668 atomic regions from SNP 149055 to 149655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,955 DEBUG Processing 252/601 atomic regions from SNP 75479 to 76079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,965 DEBUG Processing 250/565 atomic regions from SNP 74922 to 75522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,983 DEBUG Processing 498/668 atomic regions from SNP 149355 to 149955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,132 DEBUG Processing 253/601 atomic regions from SNP 75779 to 76379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,137 DEBUG Processing 251/565 atomic regions from SNP 75222 to 75822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,184 DEBUG Processing 499/668 atomic regions from SNP 149655 to 150255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,310 DEBUG Processing 254/601 atomic regions from SNP 76079 to 76679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,310 DEBUG Processing 252/565 atomic regions from SNP 75522 to 76122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,397 DEBUG Processing 500/668 atomic regions from SNP 149955 to 150555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,483 DEBUG Processing 253/565 atomic regions from SNP 75822 to 76422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,485 DEBUG Processing 255/601 atomic regions from SNP 76379 to 76979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,595 DEBUG Processing 501/668 atomic regions from SNP 150255 to 150855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,657 DEBUG Processing 254/565 atomic regions from SNP 76122 to 76722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,660 DEBUG Processing 256/601 atomic regions from SNP 76679 to 77279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,780 DEBUG Processing 502/668 atomic regions from SNP 150555 to 151155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,829 DEBUG Processing 255/565 atomic regions from SNP 76422 to 77022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,838 DEBUG Processing 257/601 atomic regions from SNP 76979 to 77579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,967 DEBUG Processing 503/668 atomic regions from SNP 150855 to 151455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,002 DEBUG Processing 256/565 atomic regions from SNP 76722 to 77322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,014 DEBUG Processing 258/601 atomic regions from SNP 77279 to 77879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,156 DEBUG Processing 504/668 atomic regions from SNP 151155 to 151755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,177 DEBUG Processing 257/565 atomic regions from SNP 77022 to 77622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,190 DEBUG Processing 259/601 atomic regions from SNP 77579 to 78179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,343 DEBUG Processing 505/668 atomic regions from SNP 151455 to 152055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,350 DEBUG Processing 258/565 atomic regions from SNP 77322 to 77922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,364 DEBUG Processing 260/601 atomic regions from SNP 77879 to 78479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,524 DEBUG Processing 259/565 atomic regions from SNP 77622 to 78222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,533 DEBUG Processing 506/668 atomic regions from SNP 151755 to 152355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,542 DEBUG Processing 261/601 atomic regions from SNP 78179 to 78779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,701 DEBUG Processing 260/565 atomic regions from SNP 77922 to 78522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,718 DEBUG Processing 262/601 atomic regions from SNP 78479 to 79079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,721 DEBUG Processing 507/668 atomic regions from SNP 152055 to 152655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,876 DEBUG Processing 261/565 atomic regions from SNP 78222 to 78822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,896 DEBUG Processing 263/601 atomic regions from SNP 78779 to 79379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,913 DEBUG Processing 508/668 atomic regions from SNP 152355 to 152955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,050 DEBUG Processing 262/565 atomic regions from SNP 78522 to 79122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,073 DEBUG Processing 264/601 atomic regions from SNP 79079 to 79679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,101 DEBUG Processing 509/668 atomic regions from SNP 152655 to 153255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,226 DEBUG Processing 263/565 atomic regions from SNP 78822 to 79422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,252 DEBUG Processing 265/601 atomic regions from SNP 79379 to 79979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,287 DEBUG Processing 510/668 atomic regions from SNP 152955 to 153555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,400 DEBUG Processing 264/565 atomic regions from SNP 79122 to 79722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,430 DEBUG Processing 266/601 atomic regions from SNP 79679 to 80279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,474 DEBUG Processing 511/668 atomic regions from SNP 153255 to 153855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,575 DEBUG Processing 265/565 atomic regions from SNP 79422 to 80022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,606 DEBUG Processing 267/601 atomic regions from SNP 79979 to 80579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,660 DEBUG Processing 512/668 atomic regions from SNP 153555 to 154155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,748 DEBUG Processing 266/565 atomic regions from SNP 79722 to 80322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,782 DEBUG Processing 268/601 atomic regions from SNP 80279 to 80879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,852 DEBUG Processing 513/668 atomic regions from SNP 153855 to 154455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,920 DEBUG Processing 267/565 atomic regions from SNP 80022 to 80622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,957 DEBUG Processing 269/601 atomic regions from SNP 80579 to 81179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,040 DEBUG Processing 514/668 atomic regions from SNP 154155 to 154755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,097 DEBUG Processing 268/565 atomic regions from SNP 80322 to 80922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,137 DEBUG Processing 270/601 atomic regions from SNP 80879 to 81479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,231 DEBUG Processing 515/668 atomic regions from SNP 154455 to 155055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,271 DEBUG Processing 269/565 atomic regions from SNP 80622 to 81222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,314 DEBUG Processing 271/601 atomic regions from SNP 81179 to 81779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,419 DEBUG Processing 516/668 atomic regions from SNP 154755 to 155355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,443 DEBUG Processing 270/565 atomic regions from SNP 80922 to 81522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,489 DEBUG Processing 272/601 atomic regions from SNP 81479 to 82079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,607 DEBUG Processing 517/668 atomic regions from SNP 155055 to 155655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,616 DEBUG Processing 271/565 atomic regions from SNP 81222 to 81822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,664 DEBUG Processing 273/601 atomic regions from SNP 81779 to 82379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,790 DEBUG Processing 272/565 atomic regions from SNP 81522 to 82122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,798 DEBUG Processing 518/668 atomic regions from SNP 155355 to 155955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,839 DEBUG Processing 274/601 atomic regions from SNP 82079 to 82679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,963 DEBUG Processing 273/565 atomic regions from SNP 81822 to 82422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,985 DEBUG Processing 519/668 atomic regions from SNP 155655 to 156255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,012 DEBUG Processing 275/601 atomic regions from SNP 82379 to 82979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,136 DEBUG Processing 274/565 atomic regions from SNP 82122 to 82722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,174 DEBUG Processing 520/668 atomic regions from SNP 155955 to 156555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,187 DEBUG Processing 276/601 atomic regions from SNP 82679 to 83279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,309 DEBUG Processing 275/565 atomic regions from SNP 82422 to 83022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,361 DEBUG Processing 277/601 atomic regions from SNP 82979 to 83579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,362 DEBUG Processing 521/668 atomic regions from SNP 156255 to 156855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,481 DEBUG Processing 276/565 atomic regions from SNP 82722 to 83322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,535 DEBUG Processing 278/601 atomic regions from SNP 83279 to 83879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,552 DEBUG Processing 522/668 atomic regions from SNP 156555 to 157155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,654 DEBUG Processing 277/565 atomic regions from SNP 83022 to 83622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,706 DEBUG Processing 279/601 atomic regions from SNP 83579 to 84179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,740 DEBUG Processing 523/668 atomic regions from SNP 156855 to 157455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,828 DEBUG Processing 278/565 atomic regions from SNP 83322 to 83922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,899 DEBUG Processing 280/601 atomic regions from SNP 83879 to 84479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,930 DEBUG Processing 524/668 atomic regions from SNP 157155 to 157755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,001 DEBUG Processing 279/565 atomic regions from SNP 83622 to 84222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,074 DEBUG Processing 281/601 atomic regions from SNP 84179 to 84779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,122 DEBUG Processing 525/668 atomic regions from SNP 157455 to 158055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,174 DEBUG Processing 280/565 atomic regions from SNP 83922 to 84522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,248 DEBUG Processing 282/601 atomic regions from SNP 84479 to 85079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,311 DEBUG Processing 526/668 atomic regions from SNP 157755 to 158355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,357 DEBUG Processing 281/565 atomic regions from SNP 84222 to 84822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,364 DEBUG Subchromosome time: 199.11915712431073, subchromosome SNPs: 214080 2025-01-31 09:57:09,365 DEBUG Estimated BADs: [28.28, 5.66, 1.41, 0.47, 2.83, 0.40, 1.41, 0.57, 2.83, 0.57, 2.83, 1.41, 0.57, 1.41, 0.57, 19.80, 2.83, 16.97, 0.94, 2.83, 5.66, 2.83, 28.28, 11.31, 2.83, 0.47, 2.83, 28.28, 5.66, 2.83, 5.66, 1.41, 0.57, 2.83, 5.66, 8.48, 1.41, 5.66, 2.83, 0.71, 1.41, 8.48, 5.66] SNP counts: [148, 6495, 4286, 3313, 2411, 5998, 1828, 3606, 8742, 7808, 10556, 2702, 10473, 9041, 2334, 191, 11883, 113, 2233, 3841, 6646, 11862, 310, 2962, 4753, 1112, 1363, 121, 8749, 9113, 9497, 2068, 4508, 1512, 4825, 5072, 1413, 15135, 3956, 3195, 5187, 10719, 2000] SNP IDs counts: [148, 6495, 4286, 3313, 2411, 5998, 1828, 3606, 8742, 7808, 10556, 2702, 10473, 9041, 2334, 191, 11883, 113, 2233, 3841, 6646, 11862, 310, 2962, 4753, 1112, 1363, 121, 8749, 9113, 9497, 2068, 4508, 1512, 4825, 5072, 1413, 15135, 3956, 3195, 5187, 10719, 2000] Critical gap: 590149bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.72Mbp, 9.21Mbp, 11.20Mbp, 12.58Mbp, 16.22Mbp, 17.29Mbp, 19.39Mbp, 24.24Mbp, 28.82Mbp, 34.85Mbp, 36.31Mbp, 42.34Mbp, 47.38Mbp, 48.77Mbp, 48.88Mbp, 55.46Mbp, 55.52Mbp, 56.77Mbp, 58.90Mbp, 62.54Mbp, 68.97Mbp, 69.13Mbp, 70.70Mbp, 73.33Mbp, 74.05Mbp, 74.83Mbp, 74.90Mbp, 79.58Mbp, 84.56Mbp, 89.65Mbp, 90.80Mbp, 93.38Mbp, 94.21Mbp, 96.77Mbp, 99.47Mbp, 100.28Mbp, 108.43Mbp, 110.58Mbp, 112.34Mbp, 115.15Mbp, 120.87Mbp, 122.08Mbp] 2025-01-31 09:57:09,365 DEBUG chr11 time: 199.11965869180858 s 2025-01-31 09:57:09,420 DEBUG Processing 283/601 atomic regions from SNP 84779 to 85379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,491 DEBUG chr11: Fitting background model for 43 segments 2025-01-31 09:57:09,499 DEBUG Processing 527/668 atomic regions from SNP 158055 to 158655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,554 DEBUG Processing 282/565 atomic regions from SNP 84522 to 85122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,594 DEBUG Processing 284/601 atomic regions from SNP 85079 to 85679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,687 DEBUG Processing 528/668 atomic regions from SNP 158355 to 158955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,726 DEBUG Processing 283/565 atomic regions from SNP 84822 to 85422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,768 DEBUG Processing 285/601 atomic regions from SNP 85379 to 85979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,872 DEBUG Processing 529/668 atomic regions from SNP 158655 to 159255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,900 DEBUG Processing 284/565 atomic regions from SNP 85122 to 85722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,949 DEBUG Processing 286/601 atomic regions from SNP 85679 to 86279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,060 DEBUG Processing 530/668 atomic regions from SNP 158955 to 159555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,078 DEBUG Processing 285/565 atomic regions from SNP 85422 to 86022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,128 DEBUG Processing 287/601 atomic regions from SNP 85979 to 86579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,250 DEBUG Processing 531/668 atomic regions from SNP 159255 to 159855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,255 DEBUG Processing 286/565 atomic regions from SNP 85722 to 86322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,306 DEBUG Processing 288/601 atomic regions from SNP 86279 to 86879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,433 DEBUG Processing 287/565 atomic regions from SNP 86022 to 86622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,441 DEBUG Processing 532/668 atomic regions from SNP 159555 to 160155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,491 DEBUG Processing 289/601 atomic regions from SNP 86579 to 87179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,609 DEBUG Processing 288/565 atomic regions from SNP 86322 to 86922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,630 DEBUG Processing 533/668 atomic regions from SNP 159855 to 160455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,667 DEBUG Processing 290/601 atomic regions from SNP 86879 to 87479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,785 DEBUG Processing 289/565 atomic regions from SNP 86622 to 87222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,820 DEBUG Processing 534/668 atomic regions from SNP 160155 to 160755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,843 DEBUG Processing 291/601 atomic regions from SNP 87179 to 87779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,959 DEBUG Processing 290/565 atomic regions from SNP 86922 to 87522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,019 DEBUG Processing 535/668 atomic regions from SNP 160455 to 161055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,021 DEBUG Processing 292/601 atomic regions from SNP 87479 to 88079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,139 DEBUG Processing 291/565 atomic regions from SNP 87222 to 87822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,210 DEBUG Processing 293/601 atomic regions from SNP 87779 to 88379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,216 DEBUG Processing 536/668 atomic regions from SNP 160755 to 161355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,318 DEBUG Processing 292/565 atomic regions from SNP 87522 to 88122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,385 DEBUG Processing 294/601 atomic regions from SNP 88079 to 88679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,403 DEBUG Processing 537/668 atomic regions from SNP 161055 to 161655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,492 DEBUG Processing 293/565 atomic regions from SNP 87822 to 88422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,561 DEBUG Processing 295/601 atomic regions from SNP 88379 to 88979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,589 DEBUG Processing 538/668 atomic regions from SNP 161355 to 161955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,666 DEBUG Processing 294/565 atomic regions from SNP 88122 to 88722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,739 DEBUG Processing 296/601 atomic regions from SNP 88679 to 89279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,776 DEBUG Processing 539/668 atomic regions from SNP 161655 to 162255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,841 DEBUG Processing 295/565 atomic regions from SNP 88422 to 89022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,913 DEBUG Processing 297/601 atomic regions from SNP 88979 to 89579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,963 DEBUG Processing 540/668 atomic regions from SNP 161955 to 162555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,013 DEBUG Processing 296/565 atomic regions from SNP 88722 to 89322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,087 DEBUG Processing 298/601 atomic regions from SNP 89279 to 89879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,167 DEBUG Processing 541/668 atomic regions from SNP 162255 to 162855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,187 DEBUG Processing 297/565 atomic regions from SNP 89022 to 89622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,261 DEBUG Processing 299/601 atomic regions from SNP 89579 to 90179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,356 DEBUG Processing 542/668 atomic regions from SNP 162555 to 163155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,363 DEBUG Processing 298/565 atomic regions from SNP 89322 to 89922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,441 DEBUG Processing 300/601 atomic regions from SNP 89879 to 90479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,538 DEBUG Processing 299/565 atomic regions from SNP 89622 to 90222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,557 DEBUG Processing 543/668 atomic regions from SNP 162855 to 163455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,617 DEBUG Processing 301/601 atomic regions from SNP 90179 to 90779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,717 DEBUG Processing 300/565 atomic regions from SNP 89922 to 90522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,767 DEBUG Processing 544/668 atomic regions from SNP 163155 to 163755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,796 DEBUG Processing 302/601 atomic regions from SNP 90479 to 91079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,870 DEBUG Subchromosome time: 174.3452458269894, subchromosome SNPs: 204860 2025-01-31 09:57:12,871 DEBUG Estimated BADs: [2.57, 1.28, 2.57, 1.28, 7.70, 25.68, 1.28, 25.68, 5.14, 0.64, 2.57, 5.14, 2.57, 7.70, 2.57, 10.27, 2.57, 5.14, 1.28, 5.14, 2.57, 7.70, 2.57, 1.28, 23.11, 0.86, 23.11, 2.57, 12.84, 1.28, 17.98, 0.86, 2.57, 5.14, 2.57, 5.14, 2.57, 0.86, 5.14] SNP counts: [1916, 7848, 9887, 11314, 1004, 565, 1788, 880, 3119, 4204, 27663, 5324, 4871, 1272, 9123, 2281, 4401, 5471, 2714, 2413, 13071, 1326, 4486, 2820, 112, 4639, 118, 1257, 285, 3412, 96, 10976, 9600, 9901, 19504, 2392, 4504, 7381, 922] SNP IDs counts: [1916, 7848, 9887, 11314, 1004, 565, 1788, 880, 3119, 4204, 27663, 5324, 4871, 1272, 9123, 2281, 4401, 5471, 2714, 2413, 13071, 1326, 4486, 2820, 112, 4639, 118, 1257, 285, 3412, 96, 10976, 9600, 9901, 19504, 2392, 4504, 7381, 922] Critical gap: 595329bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.19Mbp, 8.74Mbp, 14.71Mbp, 21.16Mbp, 21.71Mbp, 22.06Mbp, 23.28Mbp, 23.77Mbp, 25.47Mbp, 27.87Mbp, 43.17Mbp, 45.97Mbp, 48.54Mbp, 49.20Mbp, 54.50Mbp, 55.70Mbp, 58.01Mbp, 60.92Mbp, 63.04Mbp, 64.33Mbp, 73.25Mbp, 73.94Mbp, 76.49Mbp, 78.15Mbp, 78.21Mbp, 80.88Mbp, 80.94Mbp, 81.63Mbp, 81.79Mbp, 83.69Mbp, 83.75Mbp, 90.13Mbp, 95.37Mbp, 100.72Mbp, 111.49Mbp, 112.76Mbp, 115.19Mbp, 119.36Mbp, 120.42Mbp] 2025-01-31 09:57:12,871 DEBUG chr13 time: 174.34582149982452 s 2025-01-31 09:57:12,891 DEBUG Processing 301/565 atomic regions from SNP 90222 to 90822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,976 DEBUG Processing 303/601 atomic regions from SNP 90779 to 91379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,987 DEBUG Processing 545/668 atomic regions from SNP 163455 to 164055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,996 DEBUG chr13: Fitting background model for 39 segments 2025-01-31 09:57:13,071 DEBUG Processing 302/565 atomic regions from SNP 90522 to 91122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,154 DEBUG Processing 304/601 atomic regions from SNP 91079 to 91679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,189 DEBUG Processing 546/668 atomic regions from SNP 163755 to 164355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,248 DEBUG Processing 303/565 atomic regions from SNP 90822 to 91422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,362 DEBUG Processing 305/601 atomic regions from SNP 91379 to 91979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,379 DEBUG Processing 547/668 atomic regions from SNP 164055 to 164655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,428 DEBUG Processing 304/565 atomic regions from SNP 91122 to 91722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,549 DEBUG Processing 306/601 atomic regions from SNP 91679 to 92279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,574 DEBUG Processing 548/668 atomic regions from SNP 164355 to 164955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,606 DEBUG Processing 305/565 atomic regions from SNP 91422 to 92022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,730 DEBUG Processing 307/601 atomic regions from SNP 91979 to 92579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,777 DEBUG Processing 549/668 atomic regions from SNP 164655 to 165255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,787 DEBUG Processing 306/565 atomic regions from SNP 91722 to 92322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,912 DEBUG Processing 308/601 atomic regions from SNP 92279 to 92879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,969 DEBUG Processing 307/565 atomic regions from SNP 92022 to 92622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,004 DEBUG Processing 550/668 atomic regions from SNP 164955 to 165555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,090 DEBUG Processing 309/601 atomic regions from SNP 92579 to 93179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,146 DEBUG Processing 308/565 atomic regions from SNP 92322 to 92922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,225 DEBUG Processing 551/668 atomic regions from SNP 165255 to 165855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,271 DEBUG Processing 310/601 atomic regions from SNP 92879 to 93479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,325 DEBUG Processing 309/565 atomic regions from SNP 92622 to 93222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,433 DEBUG Processing 552/668 atomic regions from SNP 165555 to 166155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,456 DEBUG Processing 311/601 atomic regions from SNP 93179 to 93779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,506 DEBUG Processing 310/565 atomic regions from SNP 92922 to 93522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,636 DEBUG Processing 312/601 atomic regions from SNP 93479 to 94079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,640 DEBUG Processing 553/668 atomic regions from SNP 165855 to 166455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,688 DEBUG Processing 311/565 atomic regions from SNP 93222 to 93822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,819 DEBUG Processing 313/601 atomic regions from SNP 93779 to 94379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,856 DEBUG Processing 554/668 atomic regions from SNP 166155 to 166755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,870 DEBUG Processing 312/565 atomic regions from SNP 93522 to 94122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,003 DEBUG Processing 314/601 atomic regions from SNP 94079 to 94679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,056 DEBUG Processing 313/565 atomic regions from SNP 93822 to 94422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,074 DEBUG Processing 555/668 atomic regions from SNP 166455 to 167055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,185 DEBUG Processing 315/601 atomic regions from SNP 94379 to 94979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,239 DEBUG Processing 314/565 atomic regions from SNP 94122 to 94722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,283 DEBUG Processing 556/668 atomic regions from SNP 166755 to 167355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,366 DEBUG Processing 316/601 atomic regions from SNP 94679 to 95279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,421 DEBUG Processing 315/565 atomic regions from SNP 94422 to 95022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,472 DEBUG Processing 557/668 atomic regions from SNP 167055 to 167655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,549 DEBUG Processing 317/601 atomic regions from SNP 94979 to 95579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,617 DEBUG Processing 316/565 atomic regions from SNP 94722 to 95322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,660 DEBUG Processing 558/668 atomic regions from SNP 167355 to 167955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,729 DEBUG Processing 318/601 atomic regions from SNP 95279 to 95879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,834 DEBUG Processing 317/565 atomic regions from SNP 95022 to 95622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,849 DEBUG Processing 559/668 atomic regions from SNP 167655 to 168255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,911 DEBUG Processing 319/601 atomic regions from SNP 95579 to 96179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,033 DEBUG Processing 318/565 atomic regions from SNP 95322 to 95922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,048 DEBUG Processing 560/668 atomic regions from SNP 167955 to 168555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,095 DEBUG Processing 320/601 atomic regions from SNP 95879 to 96479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,213 DEBUG Processing 319/565 atomic regions from SNP 95622 to 96222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,252 DEBUG Processing 561/668 atomic regions from SNP 168255 to 168855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,305 DEBUG Processing 321/601 atomic regions from SNP 96179 to 96779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,395 DEBUG Processing 320/565 atomic regions from SNP 95922 to 96522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,441 DEBUG Processing 562/668 atomic regions from SNP 168555 to 169155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,521 DEBUG Processing 322/601 atomic regions from SNP 96479 to 97079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,575 DEBUG Processing 321/565 atomic regions from SNP 96222 to 96822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,645 DEBUG Processing 563/668 atomic regions from SNP 168855 to 169455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,736 DEBUG Processing 323/601 atomic regions from SNP 96779 to 97379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,758 DEBUG Processing 322/565 atomic regions from SNP 96522 to 97122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,864 DEBUG Processing 564/668 atomic regions from SNP 169155 to 169755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,939 DEBUG Processing 324/601 atomic regions from SNP 97079 to 97679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,941 DEBUG Processing 323/565 atomic regions from SNP 96822 to 97422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,086 DEBUG Processing 565/668 atomic regions from SNP 169455 to 170055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,138 DEBUG Processing 325/601 atomic regions from SNP 97379 to 97979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,142 DEBUG Processing 324/565 atomic regions from SNP 97122 to 97722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,307 DEBUG Processing 566/668 atomic regions from SNP 169755 to 170355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,324 DEBUG Processing 325/565 atomic regions from SNP 97422 to 98022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,342 DEBUG Processing 326/601 atomic regions from SNP 97679 to 98279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,496 DEBUG Processing 567/668 atomic regions from SNP 170055 to 170655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,505 DEBUG Processing 326/565 atomic regions from SNP 97722 to 98322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,546 DEBUG Processing 327/601 atomic regions from SNP 97979 to 98579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,685 DEBUG Processing 568/668 atomic regions from SNP 170355 to 170955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,686 DEBUG Processing 327/565 atomic regions from SNP 98022 to 98622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,760 DEBUG Processing 328/601 atomic regions from SNP 98279 to 98879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,863 DEBUG Processing 328/565 atomic regions from SNP 98322 to 98922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,889 DEBUG Processing 569/668 atomic regions from SNP 170655 to 171255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,973 DEBUG Processing 329/601 atomic regions from SNP 98579 to 99179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,040 DEBUG Processing 329/565 atomic regions from SNP 98622 to 99222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,105 DEBUG Processing 570/668 atomic regions from SNP 170955 to 171555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,173 DEBUG Processing 330/601 atomic regions from SNP 98879 to 99479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,220 DEBUG Processing 330/565 atomic regions from SNP 98922 to 99522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,295 DEBUG Processing 571/668 atomic regions from SNP 171255 to 171855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,371 DEBUG Processing 331/601 atomic regions from SNP 99179 to 99779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,401 DEBUG Processing 331/565 atomic regions from SNP 99222 to 99822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,482 DEBUG Processing 572/668 atomic regions from SNP 171555 to 172155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,560 DEBUG Processing 332/601 atomic regions from SNP 99479 to 100079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,603 DEBUG Processing 332/565 atomic regions from SNP 99522 to 100122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,670 DEBUG Processing 573/668 atomic regions from SNP 171855 to 172455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,758 DEBUG Processing 333/601 atomic regions from SNP 99779 to 100379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,789 DEBUG Processing 333/565 atomic regions from SNP 99822 to 100422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,857 DEBUG Processing 574/668 atomic regions from SNP 172155 to 172755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,937 DEBUG Processing 334/601 atomic regions from SNP 100079 to 100679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,967 DEBUG Processing 334/565 atomic regions from SNP 100122 to 100722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,048 DEBUG Processing 575/668 atomic regions from SNP 172455 to 173055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,117 DEBUG Processing 335/601 atomic regions from SNP 100379 to 100979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,144 DEBUG Processing 335/565 atomic regions from SNP 100422 to 101022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,235 DEBUG Processing 576/668 atomic regions from SNP 172755 to 173355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,297 DEBUG Processing 336/601 atomic regions from SNP 100679 to 101279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,321 DEBUG Processing 336/565 atomic regions from SNP 100722 to 101322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,435 DEBUG Processing 577/668 atomic regions from SNP 173055 to 173655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,478 DEBUG Processing 337/601 atomic regions from SNP 100979 to 101579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,498 DEBUG Processing 337/565 atomic regions from SNP 101022 to 101622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,640 DEBUG Processing 578/668 atomic regions from SNP 173355 to 173955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,658 DEBUG Processing 338/601 atomic regions from SNP 101279 to 101879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,676 DEBUG Processing 338/565 atomic regions from SNP 101322 to 101922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,836 DEBUG Processing 339/601 atomic regions from SNP 101579 to 102179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,854 DEBUG Processing 339/565 atomic regions from SNP 101622 to 102222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,856 DEBUG Processing 579/668 atomic regions from SNP 173655 to 174255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,014 DEBUG Processing 340/601 atomic regions from SNP 101879 to 102479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,032 DEBUG Processing 340/565 atomic regions from SNP 101922 to 102522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,062 DEBUG Processing 580/668 atomic regions from SNP 173955 to 174555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,192 DEBUG Processing 341/601 atomic regions from SNP 102179 to 102779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,211 DEBUG Processing 341/565 atomic regions from SNP 102222 to 102822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,252 DEBUG Processing 581/668 atomic regions from SNP 174255 to 174855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,369 DEBUG Processing 342/601 atomic regions from SNP 102479 to 103079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,388 DEBUG Processing 342/565 atomic regions from SNP 102522 to 103122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,449 DEBUG Processing 582/668 atomic regions from SNP 174555 to 175155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,550 DEBUG Processing 343/601 atomic regions from SNP 102779 to 103379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,571 DEBUG Processing 343/565 atomic regions from SNP 102822 to 103422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,667 DEBUG Processing 583/668 atomic regions from SNP 174855 to 175455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,728 DEBUG Processing 344/601 atomic regions from SNP 103079 to 103679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,750 DEBUG Processing 344/565 atomic regions from SNP 103122 to 103722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,881 DEBUG Processing 584/668 atomic regions from SNP 175155 to 175755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,908 DEBUG Processing 345/601 atomic regions from SNP 103379 to 103979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,928 DEBUG Processing 345/565 atomic regions from SNP 103422 to 104022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,085 DEBUG Processing 346/601 atomic regions from SNP 103679 to 104279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,097 DEBUG Processing 585/668 atomic regions from SNP 175455 to 176055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,106 DEBUG Processing 346/565 atomic regions from SNP 103722 to 104322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,283 DEBUG Processing 347/601 atomic regions from SNP 103979 to 104579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,288 DEBUG Processing 347/565 atomic regions from SNP 104022 to 104622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,307 DEBUG Processing 586/668 atomic regions from SNP 175755 to 176355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,469 DEBUG Processing 348/565 atomic regions from SNP 104322 to 104922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,475 DEBUG Processing 348/601 atomic regions from SNP 104279 to 104879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,494 DEBUG Processing 587/668 atomic regions from SNP 176055 to 176655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,649 DEBUG Processing 349/565 atomic regions from SNP 104622 to 105222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,655 DEBUG Processing 349/601 atomic regions from SNP 104579 to 105179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,682 DEBUG Processing 588/668 atomic regions from SNP 176355 to 176955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,830 DEBUG Processing 350/565 atomic regions from SNP 104922 to 105522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,837 DEBUG Processing 350/601 atomic regions from SNP 104879 to 105479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,875 DEBUG Processing 589/668 atomic regions from SNP 176655 to 177255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,014 DEBUG Processing 351/565 atomic regions from SNP 105222 to 105822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,019 DEBUG Processing 351/601 atomic regions from SNP 105179 to 105779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,064 DEBUG Processing 590/668 atomic regions from SNP 176955 to 177555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,195 DEBUG Processing 352/565 atomic regions from SNP 105522 to 106122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,200 DEBUG Processing 352/601 atomic regions from SNP 105479 to 106079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,254 DEBUG Processing 591/668 atomic regions from SNP 177255 to 177855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,375 DEBUG Processing 353/565 atomic regions from SNP 105822 to 106422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,381 DEBUG Processing 353/601 atomic regions from SNP 105779 to 106379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,442 DEBUG Processing 592/668 atomic regions from SNP 177555 to 178155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,554 DEBUG Processing 354/565 atomic regions from SNP 106122 to 106722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,560 DEBUG Processing 354/601 atomic regions from SNP 106079 to 106679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,630 DEBUG Processing 593/668 atomic regions from SNP 177855 to 178455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,734 DEBUG Processing 355/565 atomic regions from SNP 106422 to 107022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,740 DEBUG Processing 355/601 atomic regions from SNP 106379 to 106979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,818 DEBUG Processing 594/668 atomic regions from SNP 178155 to 178755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,914 DEBUG Processing 356/565 atomic regions from SNP 106722 to 107322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,919 DEBUG Processing 356/601 atomic regions from SNP 106679 to 107279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,005 DEBUG Processing 595/668 atomic regions from SNP 178455 to 179055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,092 DEBUG Processing 357/565 atomic regions from SNP 107022 to 107622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,098 DEBUG Processing 357/601 atomic regions from SNP 106979 to 107579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,190 DEBUG Processing 596/668 atomic regions from SNP 178755 to 179355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,270 DEBUG Processing 358/565 atomic regions from SNP 107322 to 107922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,290 DEBUG Processing 358/601 atomic regions from SNP 107279 to 107879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,388 DEBUG Processing 597/668 atomic regions from SNP 179055 to 179655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,452 DEBUG Processing 359/565 atomic regions from SNP 107622 to 108222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,492 DEBUG Processing 359/601 atomic regions from SNP 107579 to 108179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,573 DEBUG Processing 598/668 atomic regions from SNP 179355 to 179955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,628 DEBUG Processing 360/565 atomic regions from SNP 107922 to 108522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,696 DEBUG Processing 360/601 atomic regions from SNP 107879 to 108479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,770 DEBUG Processing 599/668 atomic regions from SNP 179655 to 180255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,803 DEBUG Processing 361/565 atomic regions from SNP 108222 to 108822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,891 DEBUG Processing 361/601 atomic regions from SNP 108179 to 108779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,975 DEBUG Processing 600/668 atomic regions from SNP 179955 to 180555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,980 DEBUG Processing 362/565 atomic regions from SNP 108522 to 109122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,067 DEBUG Processing 362/601 atomic regions from SNP 108479 to 109079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,155 DEBUG Processing 363/565 atomic regions from SNP 108822 to 109422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,160 DEBUG Processing 601/668 atomic regions from SNP 180255 to 180855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,242 DEBUG Processing 363/601 atomic regions from SNP 108779 to 109379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,333 DEBUG Processing 364/565 atomic regions from SNP 109122 to 109722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,349 DEBUG Processing 602/668 atomic regions from SNP 180555 to 181155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,420 DEBUG Processing 364/601 atomic regions from SNP 109079 to 109679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,516 DEBUG Processing 365/565 atomic regions from SNP 109422 to 110022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,558 DEBUG Processing 603/668 atomic regions from SNP 180855 to 181455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,606 DEBUG Processing 365/601 atomic regions from SNP 109379 to 109979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,705 DEBUG Processing 366/565 atomic regions from SNP 109722 to 110322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,799 DEBUG Processing 604/668 atomic regions from SNP 181155 to 181755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,806 DEBUG Processing 366/601 atomic regions from SNP 109679 to 110279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,887 DEBUG Processing 367/565 atomic regions from SNP 110022 to 110622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,991 DEBUG Processing 367/601 atomic regions from SNP 109979 to 110579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,992 DEBUG Processing 605/668 atomic regions from SNP 181455 to 182055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,089 DEBUG Processing 368/565 atomic regions from SNP 110322 to 110922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,182 DEBUG Processing 368/601 atomic regions from SNP 110279 to 110879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,194 DEBUG Processing 606/668 atomic regions from SNP 181755 to 182355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,283 DEBUG Processing 369/565 atomic regions from SNP 110622 to 111222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,367 DEBUG Processing 369/601 atomic regions from SNP 110579 to 111179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,392 DEBUG Processing 607/668 atomic regions from SNP 182055 to 182655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,458 DEBUG Processing 370/565 atomic regions from SNP 110922 to 111522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,543 DEBUG Processing 370/601 atomic regions from SNP 110879 to 111479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,578 DEBUG Processing 608/668 atomic regions from SNP 182355 to 182955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,633 DEBUG Processing 371/565 atomic regions from SNP 111222 to 111822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,718 DEBUG Processing 371/601 atomic regions from SNP 111179 to 111779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,764 DEBUG Processing 609/668 atomic regions from SNP 182655 to 183255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,806 DEBUG Processing 372/565 atomic regions from SNP 111522 to 112122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,894 DEBUG Processing 372/601 atomic regions from SNP 111479 to 112079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,951 DEBUG Processing 610/668 atomic regions from SNP 182955 to 183555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,984 DEBUG Processing 373/565 atomic regions from SNP 111822 to 112422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,070 DEBUG Processing 373/601 atomic regions from SNP 111779 to 112379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,138 DEBUG Processing 611/668 atomic regions from SNP 183255 to 183855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,158 DEBUG Processing 374/565 atomic regions from SNP 112122 to 112722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,252 DEBUG Processing 374/601 atomic regions from SNP 112079 to 112679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,326 DEBUG Processing 612/668 atomic regions from SNP 183555 to 184155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,335 DEBUG Processing 375/565 atomic regions from SNP 112422 to 113022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,454 DEBUG Processing 375/601 atomic regions from SNP 112379 to 112979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,516 DEBUG Processing 376/565 atomic regions from SNP 112722 to 113322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,539 DEBUG Processing 613/668 atomic regions from SNP 183855 to 184455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,643 DEBUG Processing 376/601 atomic regions from SNP 112679 to 113279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,691 DEBUG Processing 377/565 atomic regions from SNP 113022 to 113622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,746 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:57:26,761 DEBUG Processing 614/668 atomic regions from SNP 184155 to 184755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,849 DEBUG Processing 377/601 atomic regions from SNP 112979 to 113579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,871 DEBUG Processing 378/565 atomic regions from SNP 113322 to 113922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,987 DEBUG Processing 615/668 atomic regions from SNP 184455 to 185055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,043 DEBUG Processing 378/601 atomic regions from SNP 113279 to 113879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,055 DEBUG Processing 379/565 atomic regions from SNP 113622 to 114222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,211 DEBUG Processing 616/668 atomic regions from SNP 184755 to 185355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,223 DEBUG Processing 379/601 atomic regions from SNP 113579 to 114179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,235 DEBUG Processing 380/565 atomic regions from SNP 113922 to 114522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,403 DEBUG Processing 380/601 atomic regions from SNP 113879 to 114479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,413 DEBUG Processing 381/565 atomic regions from SNP 114222 to 114822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,432 DEBUG Processing 617/668 atomic regions from SNP 185055 to 185655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,585 DEBUG Processing 381/601 atomic regions from SNP 114179 to 114779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,602 DEBUG Processing 382/565 atomic regions from SNP 114522 to 115122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,659 DEBUG Processing 618/668 atomic regions from SNP 185355 to 185955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,763 DEBUG Processing 382/601 atomic regions from SNP 114479 to 115079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,780 DEBUG Processing 383/565 atomic regions from SNP 114822 to 115422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,880 DEBUG Processing 619/668 atomic regions from SNP 185655 to 186255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,942 DEBUG Processing 383/601 atomic regions from SNP 114779 to 115379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,961 DEBUG Processing 384/565 atomic regions from SNP 115122 to 115722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,101 DEBUG Processing 620/668 atomic regions from SNP 185955 to 186555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,123 DEBUG Processing 384/601 atomic regions from SNP 115079 to 115679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,139 DEBUG Processing 385/565 atomic regions from SNP 115422 to 116022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,303 DEBUG Processing 385/601 atomic regions from SNP 115379 to 115979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,318 DEBUG Processing 386/565 atomic regions from SNP 115722 to 116322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,321 DEBUG Processing 621/668 atomic regions from SNP 186255 to 186855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,481 DEBUG Processing 386/601 atomic regions from SNP 115679 to 116279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,495 DEBUG Processing 387/565 atomic regions from SNP 116022 to 116622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,546 DEBUG Processing 622/668 atomic regions from SNP 186555 to 187155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,659 DEBUG Processing 387/601 atomic regions from SNP 115979 to 116579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,674 DEBUG Processing 388/565 atomic regions from SNP 116322 to 116922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,765 DEBUG Processing 623/668 atomic regions from SNP 186855 to 187455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,839 DEBUG Processing 388/601 atomic regions from SNP 116279 to 116879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,852 DEBUG Processing 389/565 atomic regions from SNP 116622 to 117222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,978 DEBUG Processing 624/668 atomic regions from SNP 187155 to 187755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,017 DEBUG Processing 389/601 atomic regions from SNP 116579 to 117179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,029 DEBUG Processing 390/565 atomic regions from SNP 116922 to 117522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,192 DEBUG Processing 625/668 atomic regions from SNP 187455 to 188055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,198 DEBUG Processing 390/601 atomic regions from SNP 116879 to 117479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,208 DEBUG Processing 391/565 atomic regions from SNP 117222 to 117822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,380 DEBUG Processing 391/601 atomic regions from SNP 117179 to 117779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,387 DEBUG Processing 392/565 atomic regions from SNP 117522 to 118122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,407 DEBUG Processing 626/668 atomic regions from SNP 187755 to 188355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,562 DEBUG Processing 392/601 atomic regions from SNP 117479 to 118079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,567 DEBUG Processing 393/565 atomic regions from SNP 117822 to 118422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,629 DEBUG Processing 627/668 atomic regions from SNP 188055 to 188655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,746 DEBUG Processing 394/565 atomic regions from SNP 118122 to 118722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,746 DEBUG Processing 393/601 atomic regions from SNP 117779 to 118379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,851 DEBUG Processing 628/668 atomic regions from SNP 188355 to 188955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,928 DEBUG Processing 394/601 atomic regions from SNP 118079 to 118679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,929 DEBUG Processing 395/565 atomic regions from SNP 118422 to 119022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,076 DEBUG Processing 629/668 atomic regions from SNP 188655 to 189255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,108 DEBUG Processing 396/565 atomic regions from SNP 118722 to 119322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,111 DEBUG Processing 395/601 atomic regions from SNP 118379 to 118979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,294 DEBUG Processing 397/565 atomic regions from SNP 119022 to 119622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,299 DEBUG Processing 396/601 atomic regions from SNP 118679 to 119279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,306 DEBUG Processing 630/668 atomic regions from SNP 188955 to 189555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,477 DEBUG Processing 398/565 atomic regions from SNP 119322 to 119922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,482 DEBUG Processing 397/601 atomic regions from SNP 118979 to 119579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,524 DEBUG Processing 631/668 atomic regions from SNP 189255 to 189855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,656 DEBUG Processing 399/565 atomic regions from SNP 119622 to 120222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,661 DEBUG Processing 398/601 atomic regions from SNP 119279 to 119879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,720 DEBUG Processing 632/668 atomic regions from SNP 189555 to 190155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,839 DEBUG Processing 399/601 atomic regions from SNP 119579 to 120179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,841 DEBUG Processing 400/565 atomic regions from SNP 119922 to 120522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,906 DEBUG Processing 633/668 atomic regions from SNP 189855 to 190455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,021 DEBUG Processing 401/565 atomic regions from SNP 120222 to 120822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,022 DEBUG Processing 400/601 atomic regions from SNP 119879 to 120479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,095 DEBUG Processing 634/668 atomic regions from SNP 190155 to 190755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,202 DEBUG Processing 402/565 atomic regions from SNP 120522 to 121122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,205 DEBUG Processing 401/601 atomic regions from SNP 120179 to 120779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,286 DEBUG Processing 635/668 atomic regions from SNP 190455 to 191055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,382 DEBUG Processing 403/565 atomic regions from SNP 120822 to 121422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,387 DEBUG Processing 402/601 atomic regions from SNP 120479 to 121079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,473 DEBUG Processing 636/668 atomic regions from SNP 190755 to 191355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,563 DEBUG Processing 404/565 atomic regions from SNP 121122 to 121722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,567 DEBUG Processing 403/601 atomic regions from SNP 120779 to 121379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,659 DEBUG Processing 637/668 atomic regions from SNP 191055 to 191655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,741 DEBUG Processing 405/565 atomic regions from SNP 121422 to 122022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,746 DEBUG Processing 404/601 atomic regions from SNP 121079 to 121679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,847 DEBUG Processing 638/668 atomic regions from SNP 191355 to 191955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,922 DEBUG Processing 406/565 atomic regions from SNP 121722 to 122322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,927 DEBUG Processing 405/601 atomic regions from SNP 121379 to 121979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,033 DEBUG Processing 639/668 atomic regions from SNP 191655 to 192255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,104 DEBUG Processing 407/565 atomic regions from SNP 122022 to 122622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,111 DEBUG Processing 406/601 atomic regions from SNP 121679 to 122279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,223 DEBUG Processing 640/668 atomic regions from SNP 191955 to 192555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,284 DEBUG Processing 408/565 atomic regions from SNP 122322 to 122922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,289 DEBUG Processing 407/601 atomic regions from SNP 121979 to 122579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,408 DEBUG Processing 641/668 atomic regions from SNP 192255 to 192855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,463 DEBUG Processing 409/565 atomic regions from SNP 122622 to 123222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,467 DEBUG Processing 408/601 atomic regions from SNP 122279 to 122879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,595 DEBUG Processing 642/668 atomic regions from SNP 192555 to 193155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,641 DEBUG Processing 410/565 atomic regions from SNP 122922 to 123522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,647 DEBUG Processing 409/601 atomic regions from SNP 122579 to 123179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,778 DEBUG Processing 643/668 atomic regions from SNP 192855 to 193455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,817 DEBUG Processing 411/565 atomic regions from SNP 123222 to 123822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,823 DEBUG Processing 410/601 atomic regions from SNP 122879 to 123479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,963 DEBUG Processing 644/668 atomic regions from SNP 193155 to 193755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,998 DEBUG Processing 412/565 atomic regions from SNP 123522 to 124122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,009 DEBUG Processing 411/601 atomic regions from SNP 123179 to 123779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,148 DEBUG Processing 645/668 atomic regions from SNP 193455 to 194055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,178 DEBUG Processing 413/565 atomic regions from SNP 123822 to 124422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,221 DEBUG Processing 412/601 atomic regions from SNP 123479 to 124079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,335 DEBUG Processing 646/668 atomic regions from SNP 193755 to 194355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,359 DEBUG Processing 414/565 atomic regions from SNP 124122 to 124722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,434 DEBUG Processing 413/601 atomic regions from SNP 123779 to 124379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,543 DEBUG Processing 415/565 atomic regions from SNP 124422 to 125022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,552 DEBUG Processing 647/668 atomic regions from SNP 194055 to 194655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,626 DEBUG Processing 414/601 atomic regions from SNP 124079 to 124679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,720 DEBUG Processing 416/565 atomic regions from SNP 124722 to 125322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,759 DEBUG Processing 648/668 atomic regions from SNP 194355 to 194955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,834 DEBUG Processing 415/601 atomic regions from SNP 124379 to 124979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,897 DEBUG Processing 417/565 atomic regions from SNP 125022 to 125622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,953 DEBUG Processing 649/668 atomic regions from SNP 194655 to 195255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,049 DEBUG Processing 416/601 atomic regions from SNP 124679 to 125279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,076 DEBUG Processing 418/565 atomic regions from SNP 125322 to 125922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,143 DEBUG Processing 650/668 atomic regions from SNP 194955 to 195555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,257 DEBUG Processing 417/601 atomic regions from SNP 124979 to 125579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,257 DEBUG Processing 419/565 atomic regions from SNP 125622 to 126222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,331 DEBUG Processing 651/668 atomic regions from SNP 195255 to 195855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,438 DEBUG Processing 420/565 atomic regions from SNP 125922 to 126522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,442 DEBUG Processing 418/601 atomic regions from SNP 125279 to 125879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,532 DEBUG Processing 652/668 atomic regions from SNP 195555 to 196155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,622 DEBUG Processing 421/565 atomic regions from SNP 126222 to 126822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,631 DEBUG Processing 419/601 atomic regions from SNP 125579 to 126179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,738 DEBUG Processing 653/668 atomic regions from SNP 195855 to 196455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,807 DEBUG Processing 422/565 atomic regions from SNP 126522 to 127122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,817 DEBUG Processing 420/601 atomic regions from SNP 125879 to 126479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,936 DEBUG Processing 654/668 atomic regions from SNP 196155 to 196755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,989 DEBUG Processing 423/565 atomic regions from SNP 126822 to 127422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,002 DEBUG Processing 421/601 atomic regions from SNP 126179 to 126779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,121 DEBUG Processing 655/668 atomic regions from SNP 196455 to 197055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,170 DEBUG Processing 424/565 atomic regions from SNP 127122 to 127722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,203 DEBUG Processing 422/601 atomic regions from SNP 126479 to 127079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,309 DEBUG Processing 656/668 atomic regions from SNP 196755 to 197355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,347 DEBUG Processing 425/565 atomic regions from SNP 127422 to 128022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,404 DEBUG Processing 423/601 atomic regions from SNP 126779 to 127379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,504 DEBUG Processing 657/668 atomic regions from SNP 197055 to 197655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,525 DEBUG Processing 426/565 atomic regions from SNP 127722 to 128322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,584 DEBUG Processing 424/601 atomic regions from SNP 127079 to 127679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,698 DEBUG Processing 658/668 atomic regions from SNP 197355 to 197955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,703 DEBUG Processing 427/565 atomic regions from SNP 128022 to 128622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,761 DEBUG Processing 425/601 atomic regions from SNP 127379 to 127979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,880 DEBUG Processing 428/565 atomic regions from SNP 128322 to 128922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,884 DEBUG Processing 659/668 atomic regions from SNP 197655 to 198255 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,939 DEBUG Processing 426/601 atomic regions from SNP 127679 to 128279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,060 DEBUG Processing 429/565 atomic regions from SNP 128622 to 129222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,098 DEBUG Processing 660/668 atomic regions from SNP 197955 to 198555 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,120 DEBUG Processing 427/601 atomic regions from SNP 127979 to 128579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,238 DEBUG Processing 430/565 atomic regions from SNP 128922 to 129522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,293 DEBUG Processing 661/668 atomic regions from SNP 198255 to 198855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,332 DEBUG Processing 428/601 atomic regions from SNP 128279 to 128879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,422 DEBUG Processing 431/565 atomic regions from SNP 129222 to 129822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,496 DEBUG Processing 662/668 atomic regions from SNP 198555 to 199155 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,545 DEBUG Processing 429/601 atomic regions from SNP 128579 to 129179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,601 DEBUG Processing 432/565 atomic regions from SNP 129522 to 130122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,697 DEBUG Processing 663/668 atomic regions from SNP 198855 to 199455 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,786 DEBUG Processing 430/601 atomic regions from SNP 128879 to 129479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,801 DEBUG Processing 433/565 atomic regions from SNP 129822 to 130422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,912 DEBUG Processing 664/668 atomic regions from SNP 199155 to 199755 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,982 DEBUG Processing 434/565 atomic regions from SNP 130122 to 130722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,006 DEBUG Processing 431/601 atomic regions from SNP 129179 to 129779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,101 DEBUG Processing 665/668 atomic regions from SNP 199455 to 200055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,171 DEBUG Processing 435/565 atomic regions from SNP 130422 to 131022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,220 DEBUG Processing 432/601 atomic regions from SNP 129479 to 130079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,286 DEBUG Processing 666/668 atomic regions from SNP 199755 to 200355 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,350 DEBUG Processing 436/565 atomic regions from SNP 130722 to 131322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,435 DEBUG Processing 433/601 atomic regions from SNP 129779 to 130379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,472 DEBUG Processing 667/668 atomic regions from SNP 200055 to 200655 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,528 DEBUG Processing 437/565 atomic regions from SNP 131022 to 131622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,649 DEBUG Processing 434/601 atomic regions from SNP 130079 to 130679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,661 DEBUG Processing 668/668 atomic regions from SNP 200355 to 200955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,708 DEBUG Processing 438/565 atomic regions from SNP 131322 to 131922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,769 DEBUG Unique SNPs positions in subchromosome 1: 200956 2025-01-31 09:57:37,864 DEBUG Processing 435/601 atomic regions from SNP 130379 to 130979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,909 DEBUG Processing 439/565 atomic regions from SNP 131622 to 132222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,080 DEBUG Processing 436/601 atomic regions from SNP 130679 to 131279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,111 DEBUG Processing 440/565 atomic regions from SNP 131922 to 132522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,293 DEBUG Processing 441/565 atomic regions from SNP 132222 to 132822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,298 DEBUG Processing 437/601 atomic regions from SNP 130979 to 131579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,473 DEBUG Processing 442/565 atomic regions from SNP 132522 to 133122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,508 DEBUG Processing 438/601 atomic regions from SNP 131279 to 131879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,650 DEBUG Processing 443/565 atomic regions from SNP 132822 to 133422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,715 DEBUG Processing 439/601 atomic regions from SNP 131579 to 132179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,834 DEBUG Processing 444/565 atomic regions from SNP 133122 to 133722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,916 DEBUG Processing 440/601 atomic regions from SNP 131879 to 132479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,009 DEBUG Processing 445/565 atomic regions from SNP 133422 to 134022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,130 DEBUG Processing 441/601 atomic regions from SNP 132179 to 132779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,183 DEBUG Processing 446/565 atomic regions from SNP 133722 to 134322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,341 DEBUG Processing 442/601 atomic regions from SNP 132479 to 133079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,360 DEBUG Processing 447/565 atomic regions from SNP 134022 to 134622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,535 DEBUG Processing 448/565 atomic regions from SNP 134322 to 134922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,550 DEBUG Processing 443/601 atomic regions from SNP 132779 to 133379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,709 DEBUG Processing 449/565 atomic regions from SNP 134622 to 135222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,763 DEBUG Processing 444/601 atomic regions from SNP 133079 to 133679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,882 DEBUG Processing 450/565 atomic regions from SNP 134922 to 135522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,975 DEBUG Processing 445/601 atomic regions from SNP 133379 to 133979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,057 DEBUG Processing 451/565 atomic regions from SNP 135222 to 135822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,187 DEBUG Processing 446/601 atomic regions from SNP 133679 to 134279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,232 DEBUG Processing 452/565 atomic regions from SNP 135522 to 136122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,400 DEBUG Processing 447/601 atomic regions from SNP 133979 to 134579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,408 DEBUG Processing 453/565 atomic regions from SNP 135822 to 136422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,584 DEBUG Processing 454/565 atomic regions from SNP 136122 to 136722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,610 DEBUG Processing 448/601 atomic regions from SNP 134279 to 134879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,761 DEBUG Processing 455/565 atomic regions from SNP 136422 to 137022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,821 DEBUG Processing 449/601 atomic regions from SNP 134579 to 135179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,934 DEBUG Processing 456/565 atomic regions from SNP 136722 to 137322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,033 DEBUG Processing 450/601 atomic regions from SNP 134879 to 135479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,103 DEBUG Processing 457/565 atomic regions from SNP 137022 to 137622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,243 DEBUG Processing 451/601 atomic regions from SNP 135179 to 135779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,274 DEBUG Processing 458/565 atomic regions from SNP 137322 to 137922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,447 DEBUG Processing 459/565 atomic regions from SNP 137622 to 138222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,452 DEBUG Processing 452/601 atomic regions from SNP 135479 to 136079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,619 DEBUG Processing 460/565 atomic regions from SNP 137922 to 138522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,659 DEBUG Processing 453/601 atomic regions from SNP 135779 to 136379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,798 DEBUG Processing 461/565 atomic regions from SNP 138222 to 138822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,873 DEBUG Processing 454/601 atomic regions from SNP 136079 to 136679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,973 DEBUG Processing 462/565 atomic regions from SNP 138522 to 139122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,087 DEBUG Processing 455/601 atomic regions from SNP 136379 to 136979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,146 DEBUG Processing 463/565 atomic regions from SNP 138822 to 139422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,293 DEBUG Processing 456/601 atomic regions from SNP 136679 to 137279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,318 DEBUG Processing 464/565 atomic regions from SNP 139122 to 139722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,492 DEBUG Processing 465/565 atomic regions from SNP 139422 to 140022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,500 DEBUG Processing 457/601 atomic regions from SNP 136979 to 137579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,671 DEBUG Processing 466/565 atomic regions from SNP 139722 to 140322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,711 DEBUG Processing 458/601 atomic regions from SNP 137279 to 137879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,855 DEBUG Processing 467/565 atomic regions from SNP 140022 to 140622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,930 DEBUG Processing 459/601 atomic regions from SNP 137579 to 138179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,032 DEBUG Processing 468/565 atomic regions from SNP 140322 to 140922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,139 DEBUG Processing 460/601 atomic regions from SNP 137879 to 138479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,208 DEBUG Processing 469/565 atomic regions from SNP 140622 to 141222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,347 DEBUG Processing 461/601 atomic regions from SNP 138179 to 138779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,386 DEBUG Processing 470/565 atomic regions from SNP 140922 to 141522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,448 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:57:43,449 DEBUG chr17: Signal quantile: 0.988. signal threshold: 20. Best RMSEA: 0.011 2025-01-31 09:57:43,557 DEBUG Processing 462/601 atomic regions from SNP 138479 to 139079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,564 DEBUG Processing 471/565 atomic regions from SNP 141222 to 141822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,743 DEBUG Processing 472/565 atomic regions from SNP 141522 to 142122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,768 DEBUG Processing 463/601 atomic regions from SNP 138779 to 139379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,920 DEBUG Processing 473/565 atomic regions from SNP 141822 to 142422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,984 DEBUG Processing 464/601 atomic regions from SNP 139079 to 139679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,094 DEBUG Processing 474/565 atomic regions from SNP 142122 to 142722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,198 DEBUG Processing 465/601 atomic regions from SNP 139379 to 139979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,269 DEBUG Processing 475/565 atomic regions from SNP 142422 to 143022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,406 DEBUG Processing 466/601 atomic regions from SNP 139679 to 140279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,448 DEBUG Processing 476/565 atomic regions from SNP 142722 to 143322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,619 DEBUG Processing 467/601 atomic regions from SNP 139979 to 140579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,623 DEBUG Processing 477/565 atomic regions from SNP 143022 to 143622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,801 DEBUG Processing 478/565 atomic regions from SNP 143322 to 143922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,833 DEBUG Processing 468/601 atomic regions from SNP 140279 to 140879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,981 DEBUG Processing 479/565 atomic regions from SNP 143622 to 144222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,986 DEBUG chr17 total SNP count: 161663 2025-01-31 09:57:44,986 DEBUG chr17 length: 94987271 2025-01-31 09:57:44,986 DEBUG ----------------------------------------- 2025-01-31 09:57:44,986 INFO Processing SNPs in chr17 2025-01-31 09:57:45,050 DEBUG Processing 469/601 atomic regions from SNP 140579 to 141179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,146 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 161663)] 2025-01-31 09:57:45,154 DEBUG Processing 480/565 atomic regions from SNP 143922 to 144522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,256 DEBUG Processing 470/601 atomic regions from SNP 140879 to 141479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,256 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:45,333 DEBUG Processing 481/565 atomic regions from SNP 144222 to 144822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,432 DEBUG Processing 471/601 atomic regions from SNP 141179 to 141779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,507 DEBUG Processing 482/565 atomic regions from SNP 144522 to 145122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,616 DEBUG Processing 472/601 atomic regions from SNP 141479 to 142079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,681 DEBUG Processing 483/565 atomic regions from SNP 144822 to 145422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,824 DEBUG Processing 473/601 atomic regions from SNP 141779 to 142379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,856 DEBUG Processing 484/565 atomic regions from SNP 145122 to 145722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,042 DEBUG Processing 474/601 atomic regions from SNP 142079 to 142679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,050 DEBUG Processing 485/565 atomic regions from SNP 145422 to 146022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,227 DEBUG Processing 486/565 atomic regions from SNP 145722 to 146322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,251 DEBUG Processing 475/601 atomic regions from SNP 142379 to 142979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,402 DEBUG Processing 487/565 atomic regions from SNP 146022 to 146622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,467 DEBUG Processing 476/601 atomic regions from SNP 142679 to 143279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,578 DEBUG Processing 488/565 atomic regions from SNP 146322 to 146922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,683 DEBUG Processing 477/601 atomic regions from SNP 142979 to 143579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,757 DEBUG Processing 489/565 atomic regions from SNP 146622 to 147222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,883 DEBUG Processing 478/601 atomic regions from SNP 143279 to 143879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,932 DEBUG Processing 490/565 atomic regions from SNP 146922 to 147522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,069 DEBUG Processing 479/601 atomic regions from SNP 143579 to 144179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,108 DEBUG Processing 491/565 atomic regions from SNP 147222 to 147822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,265 DEBUG Processing 480/601 atomic regions from SNP 143879 to 144479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,285 DEBUG Processing 492/565 atomic regions from SNP 147522 to 148122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,460 DEBUG Processing 493/565 atomic regions from SNP 147822 to 148422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,473 DEBUG Processing 481/601 atomic regions from SNP 144179 to 144779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,636 DEBUG Processing 494/565 atomic regions from SNP 148122 to 148722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,684 DEBUG Processing 482/601 atomic regions from SNP 144479 to 145079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,812 DEBUG Processing 495/565 atomic regions from SNP 148422 to 149022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,893 DEBUG Processing 483/601 atomic regions from SNP 144779 to 145379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,986 DEBUG Processing 496/565 atomic regions from SNP 148722 to 149322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,101 DEBUG Processing 484/601 atomic regions from SNP 145079 to 145679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,159 DEBUG Processing 497/565 atomic regions from SNP 149022 to 149622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,312 DEBUG Processing 485/601 atomic regions from SNP 145379 to 145979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,334 DEBUG Processing 498/565 atomic regions from SNP 149322 to 149922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,511 DEBUG Processing 499/565 atomic regions from SNP 149622 to 150222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,516 DEBUG Processing 486/601 atomic regions from SNP 145679 to 146279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,712 DEBUG Processing 500/565 atomic regions from SNP 149922 to 150522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,713 DEBUG Processing 487/601 atomic regions from SNP 145979 to 146579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,911 DEBUG Processing 501/565 atomic regions from SNP 150222 to 150822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,915 DEBUG Processing 488/601 atomic regions from SNP 146279 to 146879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,113 DEBUG Processing 502/565 atomic regions from SNP 150522 to 151122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,115 DEBUG Processing 489/601 atomic regions from SNP 146579 to 147179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,297 DEBUG Processing 503/565 atomic regions from SNP 150822 to 151422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,327 DEBUG Processing 490/601 atomic regions from SNP 146879 to 147479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,472 DEBUG Processing 504/565 atomic regions from SNP 151122 to 151722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,536 DEBUG Processing 491/601 atomic regions from SNP 147179 to 147779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,646 DEBUG Processing 505/565 atomic regions from SNP 151422 to 152022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,738 DEBUG Processing 492/601 atomic regions from SNP 147479 to 148079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,825 DEBUG Processing 506/565 atomic regions from SNP 151722 to 152322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,936 DEBUG Processing 493/601 atomic regions from SNP 147779 to 148379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,998 DEBUG Processing 507/565 atomic regions from SNP 152022 to 152622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,131 DEBUG Processing 494/601 atomic regions from SNP 148079 to 148679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,172 DEBUG Processing 508/565 atomic regions from SNP 152322 to 152922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,316 DEBUG Processing 495/601 atomic regions from SNP 148379 to 148979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,347 DEBUG Processing 509/565 atomic regions from SNP 152622 to 153222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,491 DEBUG Processing 496/601 atomic regions from SNP 148679 to 149279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,522 DEBUG Processing 510/565 atomic regions from SNP 152922 to 153522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,667 DEBUG Processing 497/601 atomic regions from SNP 148979 to 149579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,698 DEBUG Processing 511/565 atomic regions from SNP 153222 to 153822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,843 DEBUG Processing 498/601 atomic regions from SNP 149279 to 149879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,873 DEBUG Processing 512/565 atomic regions from SNP 153522 to 154122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,018 DEBUG Processing 499/601 atomic regions from SNP 149579 to 150179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,035 DEBUG Subchromosome time: 168.29720528237522, subchromosome SNPs: 200956 2025-01-31 09:57:51,035 DEBUG Estimated BADs: [4.76, 0.79, 2.38, 1.19, 2.38, 9.52, 2.38, 4.76, 1.19, 0.48, 2.38, 4.76, 2.38, 0.48, 2.38, 0.79, 4.76, 2.38, 9.52, 2.38, 4.76, 0.79, 2.38, 0.48, 2.38, 4.76, 2.38, 11.90, 1.19, 4.76, 1.19] SNP counts: [4313, 2703, 5115, 9633, 9031, 609, 12208, 3730, 23187, 3599, 9184, 1943, 7509, 7482, 2681, 6133, 8944, 4182, 1166, 5716, 16486, 1799, 3626, 9264, 3039, 11995, 8604, 5440, 4852, 3870, 2913] SNP IDs counts: [4313, 2703, 5115, 9633, 9031, 609, 12208, 3730, 23187, 3599, 9184, 1943, 7509, 7482, 2681, 6133, 8944, 4182, 1166, 5716, 16486, 1799, 3626, 9264, 3039, 11995, 8604, 5440, 4852, 3870, 2913] Critical gap: 599570bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.40Mbp, 6.98Mbp, 9.82Mbp, 15.34Mbp, 24.56Mbp, 24.88Mbp, 31.50Mbp, 33.50Mbp, 46.88Mbp, 49.01Mbp, 54.15Mbp, 55.42Mbp, 59.67Mbp, 64.10Mbp, 65.64Mbp, 69.15Mbp, 73.91Mbp, 76.18Mbp, 76.82Mbp, 79.94Mbp, 89.21Mbp, 90.17Mbp, 92.20Mbp, 97.59Mbp, 99.27Mbp, 105.83Mbp, 110.38Mbp, 113.23Mbp, 116.26Mbp, 118.35Mbp, 120.13Mbp] 2025-01-31 09:57:51,035 DEBUG chr12 time: 168.29764888249338 s 2025-01-31 09:57:51,048 DEBUG Processing 513/565 atomic regions from SNP 153822 to 154422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,160 DEBUG chr12: Fitting background model for 31 segments 2025-01-31 09:57:51,195 DEBUG Processing 500/601 atomic regions from SNP 149879 to 150479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,227 DEBUG Processing 514/565 atomic regions from SNP 154122 to 154722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,371 DEBUG Processing 501/601 atomic regions from SNP 150179 to 150779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,430 DEBUG Processing 515/565 atomic regions from SNP 154422 to 155022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,545 DEBUG Processing 502/601 atomic regions from SNP 150479 to 151079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,634 DEBUG Processing 516/565 atomic regions from SNP 154722 to 155322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,721 DEBUG Processing 503/601 atomic regions from SNP 150779 to 151379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,843 DEBUG Processing 517/565 atomic regions from SNP 155022 to 155622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,893 DEBUG Processing 504/601 atomic regions from SNP 151079 to 151679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,047 DEBUG Processing 518/565 atomic regions from SNP 155322 to 155922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,067 DEBUG Processing 505/601 atomic regions from SNP 151379 to 151979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,234 DEBUG Processing 519/565 atomic regions from SNP 155622 to 156222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,242 DEBUG Processing 506/601 atomic regions from SNP 151679 to 152279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,418 DEBUG Processing 507/601 atomic regions from SNP 151979 to 152579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,432 DEBUG Processing 520/565 atomic regions from SNP 155922 to 156522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,592 DEBUG Processing 508/601 atomic regions from SNP 152279 to 152879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,643 DEBUG Processing 521/565 atomic regions from SNP 156222 to 156822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,782 DEBUG Processing 509/601 atomic regions from SNP 152579 to 153179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,852 DEBUG Processing 522/565 atomic regions from SNP 156522 to 157122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,986 DEBUG Processing 510/601 atomic regions from SNP 152879 to 153479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,055 DEBUG Processing 523/565 atomic regions from SNP 156822 to 157422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,191 DEBUG Processing 511/601 atomic regions from SNP 153179 to 153779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,262 DEBUG Processing 524/565 atomic regions from SNP 157122 to 157722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,402 DEBUG Processing 512/601 atomic regions from SNP 153479 to 154079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,472 DEBUG Processing 525/565 atomic regions from SNP 157422 to 158022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,612 DEBUG Processing 513/601 atomic regions from SNP 153779 to 154379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,680 DEBUG Processing 526/565 atomic regions from SNP 157722 to 158322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,815 DEBUG Processing 514/601 atomic regions from SNP 154079 to 154679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,887 DEBUG Processing 527/565 atomic regions from SNP 158022 to 158622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,993 DEBUG Processing 515/601 atomic regions from SNP 154379 to 154979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,094 DEBUG Processing 528/565 atomic regions from SNP 158322 to 158922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,167 DEBUG Processing 516/601 atomic regions from SNP 154679 to 155279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,300 DEBUG Processing 529/565 atomic regions from SNP 158622 to 159222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,341 DEBUG Processing 517/601 atomic regions from SNP 154979 to 155579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,505 DEBUG Processing 530/565 atomic regions from SNP 158922 to 159522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,520 DEBUG Processing 518/601 atomic regions from SNP 155279 to 155879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,694 DEBUG Processing 519/601 atomic regions from SNP 155579 to 156179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,712 DEBUG Processing 531/565 atomic regions from SNP 159222 to 159822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,868 DEBUG Processing 520/601 atomic regions from SNP 155879 to 156479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,916 DEBUG Processing 532/565 atomic regions from SNP 159522 to 160122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,039 DEBUG Processing 521/601 atomic regions from SNP 156179 to 156779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,119 DEBUG Processing 533/565 atomic regions from SNP 159822 to 160422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,211 DEBUG Processing 522/601 atomic regions from SNP 156479 to 157079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,320 DEBUG Processing 534/565 atomic regions from SNP 160122 to 160722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,382 DEBUG Processing 523/601 atomic regions from SNP 156779 to 157379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,509 DEBUG Processing 535/565 atomic regions from SNP 160422 to 161022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,557 DEBUG Processing 524/601 atomic regions from SNP 157079 to 157679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,709 DEBUG Processing 536/565 atomic regions from SNP 160722 to 161322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,734 DEBUG Processing 525/601 atomic regions from SNP 157379 to 157979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,898 DEBUG Processing 537/565 atomic regions from SNP 161022 to 161622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,907 DEBUG Processing 526/601 atomic regions from SNP 157679 to 158279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,081 DEBUG Processing 527/601 atomic regions from SNP 157979 to 158579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,091 DEBUG Processing 538/565 atomic regions from SNP 161322 to 161922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,255 DEBUG Processing 528/601 atomic regions from SNP 158279 to 158879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,290 DEBUG Processing 539/565 atomic regions from SNP 161622 to 162222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,429 DEBUG Processing 529/601 atomic regions from SNP 158579 to 159179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,494 DEBUG Processing 540/565 atomic regions from SNP 161922 to 162522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,600 DEBUG Processing 530/601 atomic regions from SNP 158879 to 159479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,702 DEBUG Processing 541/565 atomic regions from SNP 162222 to 162822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,772 DEBUG Processing 531/601 atomic regions from SNP 159179 to 159779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,906 DEBUG Processing 542/565 atomic regions from SNP 162522 to 163122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,944 DEBUG Processing 532/601 atomic regions from SNP 159479 to 160079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,114 DEBUG Processing 543/565 atomic regions from SNP 162822 to 163422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,121 DEBUG Processing 533/601 atomic regions from SNP 159779 to 160379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,299 DEBUG Processing 534/601 atomic regions from SNP 160079 to 160679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,322 DEBUG Processing 544/565 atomic regions from SNP 163122 to 163722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,476 DEBUG Processing 535/601 atomic regions from SNP 160379 to 160979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,528 DEBUG Processing 545/565 atomic regions from SNP 163422 to 164022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,652 DEBUG Processing 536/601 atomic regions from SNP 160679 to 161279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,723 DEBUG Processing 546/565 atomic regions from SNP 163722 to 164322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,849 DEBUG Processing 537/601 atomic regions from SNP 160979 to 161579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,905 DEBUG Processing 547/565 atomic regions from SNP 164022 to 164622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,051 DEBUG Processing 538/601 atomic regions from SNP 161279 to 161879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,079 DEBUG Processing 548/565 atomic regions from SNP 164322 to 164922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,244 DEBUG Processing 539/601 atomic regions from SNP 161579 to 162179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,255 DEBUG Processing 549/565 atomic regions from SNP 164622 to 165222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,422 DEBUG Processing 540/601 atomic regions from SNP 161879 to 162479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,432 DEBUG Processing 550/565 atomic regions from SNP 164922 to 165522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,596 DEBUG Processing 541/601 atomic regions from SNP 162179 to 162779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,605 DEBUG Processing 551/565 atomic regions from SNP 165222 to 165822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,769 DEBUG Processing 542/601 atomic regions from SNP 162479 to 163079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,782 DEBUG Processing 552/565 atomic regions from SNP 165522 to 166122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,948 DEBUG Processing 543/601 atomic regions from SNP 162779 to 163379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,968 DEBUG Processing 553/565 atomic regions from SNP 165822 to 166422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,122 DEBUG Processing 544/601 atomic regions from SNP 163079 to 163679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,169 DEBUG Processing 554/565 atomic regions from SNP 166122 to 166722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,308 DEBUG Processing 545/601 atomic regions from SNP 163379 to 163979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,371 DEBUG Processing 555/565 atomic regions from SNP 166422 to 167022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,491 DEBUG Processing 546/601 atomic regions from SNP 163679 to 164279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,553 DEBUG Processing 556/565 atomic regions from SNP 166722 to 167322 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,662 DEBUG Processing 547/601 atomic regions from SNP 163979 to 164579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,726 DEBUG Processing 557/565 atomic regions from SNP 167022 to 167622 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,838 DEBUG Processing 548/601 atomic regions from SNP 164279 to 164879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,916 DEBUG Processing 558/565 atomic regions from SNP 167322 to 167922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,011 DEBUG Processing 549/601 atomic regions from SNP 164579 to 165179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,108 DEBUG Processing 559/565 atomic regions from SNP 167622 to 168222 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,183 DEBUG Processing 550/601 atomic regions from SNP 164879 to 165479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,303 DEBUG Processing 560/565 atomic regions from SNP 167922 to 168522 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,359 DEBUG Processing 551/601 atomic regions from SNP 165179 to 165779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,494 DEBUG Processing 561/565 atomic regions from SNP 168222 to 168822 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,535 DEBUG Processing 552/601 atomic regions from SNP 165479 to 166079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,689 DEBUG Processing 562/565 atomic regions from SNP 168522 to 169122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,712 DEBUG Processing 553/601 atomic regions from SNP 165779 to 166379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,889 DEBUG Processing 563/565 atomic regions from SNP 168822 to 169422 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,889 DEBUG Processing 554/601 atomic regions from SNP 166079 to 166679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,074 DEBUG Processing 555/601 atomic regions from SNP 166379 to 166979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,079 DEBUG Processing 564/565 atomic regions from SNP 169122 to 169722 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,273 DEBUG Processing 556/601 atomic regions from SNP 166679 to 167279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,276 DEBUG Processing 565/565 atomic regions from SNP 169422 to 170022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,410 DEBUG Unique SNPs positions in subchromosome 1: 170023 2025-01-31 09:58:01,474 DEBUG Processing 557/601 atomic regions from SNP 166979 to 167579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,669 DEBUG Processing 558/601 atomic regions from SNP 167279 to 167879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,857 DEBUG Processing 559/601 atomic regions from SNP 167579 to 168179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,029 DEBUG Processing 560/601 atomic regions from SNP 167879 to 168479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,203 DEBUG Processing 561/601 atomic regions from SNP 168179 to 168779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,395 DEBUG Processing 562/601 atomic regions from SNP 168479 to 169079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,584 DEBUG Processing 563/601 atomic regions from SNP 168779 to 169379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,775 DEBUG Processing 564/601 atomic regions from SNP 169079 to 169679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,975 DEBUG Processing 565/601 atomic regions from SNP 169379 to 169979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,213 DEBUG Processing 566/601 atomic regions from SNP 169679 to 170279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,420 DEBUG Processing 567/601 atomic regions from SNP 169979 to 170579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,605 DEBUG Processing 568/601 atomic regions from SNP 170279 to 170879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,812 DEBUG Processing 569/601 atomic regions from SNP 170579 to 171179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,029 DEBUG Processing 570/601 atomic regions from SNP 170879 to 171479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,248 DEBUG Processing 571/601 atomic regions from SNP 171179 to 171779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,270 DEBUG Segmenting atomic regions: 2025-01-31 09:58:04,340 DEBUG Processing 1/537 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,459 DEBUG Processing 572/601 atomic regions from SNP 171479 to 172079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,528 DEBUG Processing 2/537 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,672 DEBUG Processing 573/601 atomic regions from SNP 171779 to 172379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,696 DEBUG Processing 3/537 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,875 DEBUG Processing 4/537 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,897 DEBUG Processing 574/601 atomic regions from SNP 172079 to 172679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,049 DEBUG Processing 5/537 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,115 DEBUG Processing 575/601 atomic regions from SNP 172379 to 172979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,224 DEBUG Processing 6/537 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,346 DEBUG Processing 576/601 atomic regions from SNP 172679 to 173279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,405 DEBUG Processing 7/537 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,578 DEBUG Processing 577/601 atomic regions from SNP 172979 to 173579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,588 DEBUG Processing 8/537 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,759 DEBUG Processing 9/537 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,782 DEBUG Processing 578/601 atomic regions from SNP 173279 to 173879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,927 DEBUG Processing 10/537 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,992 DEBUG Processing 579/601 atomic regions from SNP 173579 to 174179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,095 DEBUG Processing 11/537 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,198 DEBUG Processing 580/601 atomic regions from SNP 173879 to 174479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,262 DEBUG Processing 12/537 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,406 DEBUG Processing 581/601 atomic regions from SNP 174179 to 174779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,455 DEBUG Processing 13/537 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,623 DEBUG Processing 582/601 atomic regions from SNP 174479 to 175079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,643 DEBUG Processing 14/537 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,828 DEBUG Processing 15/537 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,833 DEBUG Processing 583/601 atomic regions from SNP 174779 to 175379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,026 DEBUG Processing 16/537 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,038 DEBUG Processing 584/601 atomic regions from SNP 175079 to 175679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,208 DEBUG Processing 17/537 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,228 DEBUG Processing 585/601 atomic regions from SNP 175379 to 175979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,398 DEBUG Processing 18/537 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,435 DEBUG Processing 586/601 atomic regions from SNP 175679 to 176279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,593 DEBUG Processing 19/537 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,647 DEBUG Processing 587/601 atomic regions from SNP 175979 to 176579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,779 DEBUG Processing 20/537 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,841 DEBUG Processing 588/601 atomic regions from SNP 176279 to 176879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,960 DEBUG Processing 21/537 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,021 DEBUG Processing 589/601 atomic regions from SNP 176579 to 177179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,154 DEBUG Processing 22/537 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,204 DEBUG Processing 590/601 atomic regions from SNP 176879 to 177479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,324 DEBUG Processing 23/537 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,405 DEBUG Processing 591/601 atomic regions from SNP 177179 to 177779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,490 DEBUG Processing 24/537 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,616 DEBUG Processing 592/601 atomic regions from SNP 177479 to 178079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,655 DEBUG Processing 25/537 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,824 DEBUG Processing 26/537 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,830 DEBUG Processing 593/601 atomic regions from SNP 177779 to 178379 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,997 DEBUG Processing 27/537 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,047 DEBUG Processing 594/601 atomic regions from SNP 178079 to 178679 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,182 DEBUG Processing 28/537 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,257 DEBUG Processing 595/601 atomic regions from SNP 178379 to 178979 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,353 DEBUG Processing 29/537 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,463 DEBUG Processing 596/601 atomic regions from SNP 178679 to 179279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,522 DEBUG Processing 30/537 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,654 DEBUG Processing 597/601 atomic regions from SNP 178979 to 179579 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,687 DEBUG Processing 31/537 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,857 DEBUG Processing 32/537 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,861 DEBUG Processing 598/601 atomic regions from SNP 179279 to 179879 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,034 DEBUG Processing 33/537 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,079 DEBUG Processing 599/601 atomic regions from SNP 179579 to 180179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,211 DEBUG Processing 34/537 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,295 DEBUG Processing 600/601 atomic regions from SNP 179879 to 180479 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,384 DEBUG Processing 35/537 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,477 DEBUG Processing 601/601 atomic regions from SNP 180179 to 180779 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,553 DEBUG Processing 36/537 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,581 DEBUG Unique SNPs positions in subchromosome 1: 180780 2025-01-31 09:58:10,724 DEBUG Processing 37/537 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,893 DEBUG Processing 38/537 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,060 DEBUG Processing 39/537 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,228 DEBUG Processing 40/537 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,398 DEBUG Processing 41/537 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,572 DEBUG Processing 42/537 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,749 DEBUG Processing 43/537 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,950 DEBUG Processing 44/537 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,141 DEBUG Processing 45/537 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,149 DEBUG Subchromosome time: 135.01109585165977, subchromosome SNPs: 170023 2025-01-31 09:58:12,149 DEBUG Estimated BADs: [2.59, 7.78, 1.30, 5.19, 2.59, 5.19, 2.59, 10.37, 0.86, 5.19, 1.30, 5.19, 1.30, 0.65, 2.59, 0.65, 1.30, 10.37, 2.59, 10.37, 5.19] SNP counts: [721, 2986, 4801, 2125, 2463, 7465, 4274, 3614, 1122, 6953, 10524, 18365, 20997, 8335, 5176, 9583, 40525, 365, 3884, 8948, 6797] SNP IDs counts: [721, 2986, 4801, 2125, 2463, 7465, 4274, 3614, 1122, 6953, 10524, 18365, 20997, 8335, 5176, 9583, 40525, 365, 3884, 8948, 6797] Critical gap: 529102bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.09Mbp], 3.84Mbp, 5.43Mbp, 8.00Mbp, 9.17Mbp, 10.51Mbp, 14.55Mbp, 17.07Mbp, 18.98Mbp, 19.72Mbp, 23.51Mbp, 29.32Mbp, 39.14Mbp, 50.92Mbp, 55.82Mbp, 58.76Mbp, 64.40Mbp, 87.43Mbp, 87.62Mbp, 89.77Mbp, 94.48Mbp, 98.21Mbp] 2025-01-31 09:58:12,149 DEBUG chr16 time: 135.01163748651743 s 2025-01-31 09:58:12,274 DEBUG chr16: Fitting background model for 21 segments 2025-01-31 09:58:12,364 DEBUG Processing 46/537 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,593 DEBUG Processing 47/537 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,800 DEBUG Processing 48/537 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,987 DEBUG Processing 49/537 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,164 DEBUG Processing 50/537 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,337 DEBUG Processing 51/537 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,532 DEBUG Processing 52/537 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,715 DEBUG Processing 53/537 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,892 DEBUG Processing 54/537 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,065 DEBUG Processing 55/537 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,249 DEBUG Processing 56/537 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,440 DEBUG Processing 57/537 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,618 DEBUG Processing 58/537 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,796 DEBUG Processing 59/537 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,967 DEBUG Processing 60/537 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,139 DEBUG Processing 61/537 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,314 DEBUG Processing 62/537 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,492 DEBUG Processing 63/537 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,673 DEBUG Processing 64/537 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,854 DEBUG Processing 65/537 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,053 DEBUG Processing 66/537 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,250 DEBUG Processing 67/537 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,440 DEBUG Processing 68/537 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,638 DEBUG Processing 69/537 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,842 DEBUG Processing 70/537 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,020 DEBUG Processing 71/537 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,203 DEBUG Processing 72/537 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,385 DEBUG Processing 73/537 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,568 DEBUG Processing 74/537 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,749 DEBUG Processing 75/537 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,930 DEBUG Processing 76/537 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,106 DEBUG Processing 77/537 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,284 DEBUG Processing 78/537 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,461 DEBUG Processing 79/537 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,505 DEBUG Subchromosome time: 141.99369088746607, subchromosome SNPs: 180780 2025-01-31 09:58:18,505 DEBUG Estimated BADs: [1.61, 3.22, 0.81, 1.61, 9.67, 1.61, 3.22, 9.67, 3.22, 16.11, 3.22, 0.81, 1.61, 6.45, 1.61, 6.45, 1.61, 6.45, 1.61, 6.45, 12.89, 3.22, 9.67, 3.22, 12.89, 3.22, 9.67, 3.22] SNP counts: [3380, 14768, 21398, 3003, 289, 12018, 3036, 1781, 2201, 495, 11113, 10204, 12084, 3803, 7769, 639, 4082, 701, 10215, 5251, 12611, 846, 5590, 5426, 1187, 16816, 9235, 839] SNP IDs counts: [3380, 14768, 21398, 3003, 289, 12018, 3036, 1781, 2201, 495, 11113, 10204, 12084, 3803, 7769, 639, 4082, 701, 10215, 5251, 12611, 846, 5590, 5426, 1187, 16816, 9235, 839] Critical gap: 544912bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.10Mbp, 13.35Mbp, 25.73Mbp, 27.40Mbp, 27.56Mbp, 34.39Mbp, 36.11Mbp, 37.06Mbp, 38.25Mbp, 38.52Mbp, 44.86Mbp, 50.78Mbp, 57.57Mbp, 59.58Mbp, 64.00Mbp, 64.32Mbp, 66.67Mbp, 67.04Mbp, 72.78Mbp, 75.65Mbp, 82.38Mbp, 82.90Mbp, 85.84Mbp, 88.71Mbp, 89.33Mbp, 98.50Mbp, 103.37Mbp, 104.04Mbp] 2025-01-31 09:58:18,505 DEBUG chr15 time: 141.99425998330116 s 2025-01-31 09:58:18,606 DEBUG chr15: Fitting background model for 28 segments 2025-01-31 09:58:18,639 DEBUG Processing 80/537 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,819 DEBUG Processing 81/537 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,005 DEBUG Processing 82/537 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,192 DEBUG Processing 83/537 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,370 DEBUG Processing 84/537 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,548 DEBUG Processing 85/537 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,723 DEBUG Processing 86/537 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,902 DEBUG Processing 87/537 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,079 DEBUG Processing 88/537 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,261 DEBUG Processing 89/537 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,440 DEBUG Processing 90/537 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,620 DEBUG Processing 91/537 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,798 DEBUG Processing 92/537 atomic regions from SNP 27391 to 27992 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,978 DEBUG Processing 93/537 atomic regions from SNP 27692 to 28293 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,160 DEBUG Processing 94/537 atomic regions from SNP 27993 to 28594 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,340 DEBUG Processing 95/537 atomic regions from SNP 28294 to 28895 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,520 DEBUG Processing 96/537 atomic regions from SNP 28595 to 29196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,698 DEBUG Processing 97/537 atomic regions from SNP 28896 to 29497 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,879 DEBUG Processing 98/537 atomic regions from SNP 29197 to 29798 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,057 DEBUG Processing 99/537 atomic regions from SNP 29498 to 30099 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,240 DEBUG Processing 100/537 atomic regions from SNP 29799 to 30400 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,435 DEBUG Processing 101/537 atomic regions from SNP 30100 to 30701 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,614 DEBUG Processing 102/537 atomic regions from SNP 30401 to 31002 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,790 DEBUG Processing 103/537 atomic regions from SNP 30702 to 31303 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,969 DEBUG Processing 104/537 atomic regions from SNP 31003 to 31604 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,148 DEBUG Processing 105/537 atomic regions from SNP 31304 to 31905 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,327 DEBUG Processing 106/537 atomic regions from SNP 31605 to 32206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,512 DEBUG Processing 107/537 atomic regions from SNP 31906 to 32507 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,691 DEBUG Processing 108/537 atomic regions from SNP 32207 to 32808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,871 DEBUG Processing 109/537 atomic regions from SNP 32508 to 33109 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,056 DEBUG Processing 110/537 atomic regions from SNP 32809 to 33410 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,267 DEBUG Processing 111/537 atomic regions from SNP 33110 to 33711 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,485 DEBUG Processing 112/537 atomic regions from SNP 33411 to 34012 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,695 DEBUG Processing 113/537 atomic regions from SNP 33712 to 34313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,895 DEBUG Processing 114/537 atomic regions from SNP 34013 to 34614 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,103 DEBUG Processing 115/537 atomic regions from SNP 34314 to 34915 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,312 DEBUG Processing 116/537 atomic regions from SNP 34615 to 35216 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,527 DEBUG Processing 117/537 atomic regions from SNP 34916 to 35517 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,746 DEBUG Processing 118/537 atomic regions from SNP 35217 to 35818 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,964 DEBUG Processing 119/537 atomic regions from SNP 35518 to 36119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,181 DEBUG Processing 120/537 atomic regions from SNP 35819 to 36420 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,399 DEBUG Processing 121/537 atomic regions from SNP 36120 to 36721 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,614 DEBUG Processing 122/537 atomic regions from SNP 36421 to 37022 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,828 DEBUG Processing 123/537 atomic regions from SNP 36722 to 37323 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,041 DEBUG Processing 124/537 atomic regions from SNP 37023 to 37624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,257 DEBUG Processing 125/537 atomic regions from SNP 37324 to 37925 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,477 DEBUG Processing 126/537 atomic regions from SNP 37625 to 38226 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,695 DEBUG Processing 127/537 atomic regions from SNP 37926 to 38527 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,907 DEBUG Processing 128/537 atomic regions from SNP 38227 to 38828 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,112 DEBUG Processing 129/537 atomic regions from SNP 38528 to 39129 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,318 DEBUG Processing 130/537 atomic regions from SNP 38829 to 39430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,524 DEBUG Processing 131/537 atomic regions from SNP 39130 to 39731 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,730 DEBUG Processing 132/537 atomic regions from SNP 39431 to 40032 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,943 DEBUG Processing 133/537 atomic regions from SNP 39732 to 40333 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,159 DEBUG Processing 134/537 atomic regions from SNP 40033 to 40634 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,364 DEBUG Processing 135/537 atomic regions from SNP 40334 to 40935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,576 DEBUG Processing 136/537 atomic regions from SNP 40635 to 41236 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,784 DEBUG Processing 137/537 atomic regions from SNP 40936 to 41537 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,997 DEBUG Processing 138/537 atomic regions from SNP 41237 to 41838 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,209 DEBUG Processing 139/537 atomic regions from SNP 41538 to 42139 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,422 DEBUG Processing 140/537 atomic regions from SNP 41839 to 42440 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,641 DEBUG Processing 141/537 atomic regions from SNP 42140 to 42741 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,850 DEBUG Processing 142/537 atomic regions from SNP 42441 to 43042 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,058 DEBUG Processing 143/537 atomic regions from SNP 42742 to 43343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,275 DEBUG Processing 144/537 atomic regions from SNP 43043 to 43644 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,492 DEBUG Processing 145/537 atomic regions from SNP 43344 to 43945 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,705 DEBUG Processing 146/537 atomic regions from SNP 43645 to 44246 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,934 DEBUG Processing 147/537 atomic regions from SNP 43946 to 44547 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,186 DEBUG Processing 148/537 atomic regions from SNP 44247 to 44848 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,418 DEBUG Processing 149/537 atomic regions from SNP 44548 to 45149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,657 DEBUG Processing 150/537 atomic regions from SNP 44849 to 45450 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,877 DEBUG Processing 151/537 atomic regions from SNP 45150 to 45751 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,117 DEBUG Processing 152/537 atomic regions from SNP 45451 to 46052 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,353 DEBUG Processing 153/537 atomic regions from SNP 45752 to 46353 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,543 DEBUG Processing 154/537 atomic regions from SNP 46053 to 46654 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,765 DEBUG Processing 155/537 atomic regions from SNP 46354 to 46955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,943 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:58:33,989 DEBUG Processing 156/537 atomic regions from SNP 46655 to 47256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,187 DEBUG Processing 157/537 atomic regions from SNP 46956 to 47557 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,451 DEBUG Processing 158/537 atomic regions from SNP 47257 to 47858 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,686 DEBUG Processing 159/537 atomic regions from SNP 47558 to 48159 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,005 DEBUG Processing 160/537 atomic regions from SNP 47859 to 48460 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,315 DEBUG Processing 161/537 atomic regions from SNP 48160 to 48761 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,715 DEBUG Processing 162/537 atomic regions from SNP 48461 to 49062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,120 DEBUG Processing 163/537 atomic regions from SNP 48762 to 49363 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,562 DEBUG Processing 164/537 atomic regions from SNP 49063 to 49664 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,949 DEBUG Processing 165/537 atomic regions from SNP 49364 to 49965 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,170 DEBUG Processing 166/537 atomic regions from SNP 49665 to 50266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,487 DEBUG Processing 167/537 atomic regions from SNP 49966 to 50567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,692 DEBUG Processing 168/537 atomic regions from SNP 50267 to 50868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,936 DEBUG Processing 169/537 atomic regions from SNP 50568 to 51169 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,170 DEBUG Processing 170/537 atomic regions from SNP 50869 to 51470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,416 DEBUG Processing 171/537 atomic regions from SNP 51170 to 51771 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,650 DEBUG Processing 172/537 atomic regions from SNP 51471 to 52072 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,028 DEBUG Processing 173/537 atomic regions from SNP 51772 to 52373 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,400 DEBUG Processing 174/537 atomic regions from SNP 52073 to 52674 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,735 DEBUG Processing 175/537 atomic regions from SNP 52374 to 52975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,073 DEBUG Processing 176/537 atomic regions from SNP 52675 to 53276 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,341 DEBUG Processing 177/537 atomic regions from SNP 52976 to 53577 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,567 DEBUG Processing 178/537 atomic regions from SNP 53277 to 53878 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,822 DEBUG Processing 179/537 atomic regions from SNP 53578 to 54179 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,175 DEBUG Processing 180/537 atomic regions from SNP 53879 to 54480 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,527 DEBUG Processing 181/537 atomic regions from SNP 54180 to 54781 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,868 DEBUG Processing 182/537 atomic regions from SNP 54481 to 55082 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,087 DEBUG Processing 183/537 atomic regions from SNP 54782 to 55383 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,318 DEBUG Processing 184/537 atomic regions from SNP 55083 to 55684 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,574 DEBUG Processing 185/537 atomic regions from SNP 55384 to 55985 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,840 DEBUG Processing 186/537 atomic regions from SNP 55685 to 56286 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,176 DEBUG Processing 187/537 atomic regions from SNP 55986 to 56587 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,578 DEBUG Processing 188/537 atomic regions from SNP 56287 to 56888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,908 DEBUG Processing 189/537 atomic regions from SNP 56588 to 57189 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,170 DEBUG Processing 190/537 atomic regions from SNP 56889 to 57490 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,430 DEBUG Processing 191/537 atomic regions from SNP 57190 to 57791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,679 DEBUG Processing 192/537 atomic regions from SNP 57491 to 58092 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,925 DEBUG Processing 193/537 atomic regions from SNP 57792 to 58393 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,208 DEBUG Processing 194/537 atomic regions from SNP 58093 to 58694 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,362 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:58:45,363 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:58:45,414 DEBUG Processing 195/537 atomic regions from SNP 58394 to 58995 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,653 DEBUG Processing 196/537 atomic regions from SNP 58695 to 59296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,874 DEBUG Processing 197/537 atomic regions from SNP 58996 to 59597 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,199 DEBUG Processing 198/537 atomic regions from SNP 59297 to 59898 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,303 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:58:46,403 DEBUG Processing 199/537 atomic regions from SNP 59598 to 60199 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,650 DEBUG Processing 200/537 atomic regions from SNP 59899 to 60500 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,851 DEBUG Processing 201/537 atomic regions from SNP 60200 to 60801 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,037 DEBUG Processing 202/537 atomic regions from SNP 60501 to 61102 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,215 DEBUG Processing 203/537 atomic regions from SNP 60802 to 61403 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,394 DEBUG Processing 204/537 atomic regions from SNP 61103 to 61704 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,574 DEBUG Processing 205/537 atomic regions from SNP 61404 to 62005 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,683 DEBUG chrY total SNP count: 244 2025-01-31 09:58:47,683 DEBUG chrY length: 91744698 2025-01-31 09:58:47,683 DEBUG ----------------------------------------- 2025-01-31 09:58:47,683 INFO Processing SNPs in chrY 2025-01-31 09:58:47,685 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 11), (11, 47), (47, 70), (70, 81), (81, 89), (89, 97), (97, 99), (99, 116), (116, 148), (148, 158), (158, 168), (168, 169), (169, 171), (171, 179), (179, 185), (185, 193), (193, 196), (196, 197), (197, 199), (199, 200), (200, 202), (202, 244)] 2025-01-31 09:58:47,685 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [11, 36, 23, 11, 8, 8, 2, 17, 32, 10, 10, 1, 2, 8, 6, 8, 3, 1, 2, 1, 2, 42] SNP IDs counts: [11, 36, 23, 11, 8, 8, 2, 17, 32, 10, 10, 1, 2, 8, 6, 8, 3, 1, 2, 1, 2, 42] Critical gap: 33374bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[0.84Mbp], 0.85Mbp[0.11Mbp], 1.01Mbp[0.26Mbp], 1.30Mbp[0.60Mbp], 1.90Mbp[0.34Mbp], 2.24Mbp[0.12Mbp], 2.37Mbp[0.22Mbp], 2.59Mbp[1.34Mbp], 3.97Mbp[0.04Mbp], 4.04Mbp[0.11Mbp], 4.16Mbp[0.12Mbp], 4.29Mbp[0.61Mbp], 4.90Mbp[0.64Mbp], 5.54Mbp[0.44Mbp], 5.99Mbp[0.96Mbp], 6.96Mbp[3.75Mbp], 10.71Mbp[9.96Mbp], 20.67Mbp[2.04Mbp], 22.72Mbp[22.03Mbp], 44.75Mbp[41.99Mbp], 86.75Mbp[2.56Mbp], 89.31Mbp[1.41Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:58:47,686 DEBUG chrY time: 0.0026504993438720703 s 2025-01-31 09:58:47,753 DEBUG Processing 206/537 atomic regions from SNP 61705 to 62306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,930 DEBUG Processing 207/537 atomic regions from SNP 62006 to 62607 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,108 DEBUG Processing 208/537 atomic regions from SNP 62307 to 62908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,286 DEBUG Processing 209/537 atomic regions from SNP 62608 to 63209 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,465 DEBUG Processing 210/537 atomic regions from SNP 62909 to 63510 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,645 DEBUG Processing 211/537 atomic regions from SNP 63210 to 63811 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,823 DEBUG Processing 212/537 atomic regions from SNP 63511 to 64112 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,998 DEBUG Processing 213/537 atomic regions from SNP 63812 to 64413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,174 DEBUG Processing 214/537 atomic regions from SNP 64113 to 64714 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,342 DEBUG Processing 215/537 atomic regions from SNP 64414 to 65015 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,517 DEBUG Processing 216/537 atomic regions from SNP 64715 to 65316 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,690 DEBUG Processing 217/537 atomic regions from SNP 65016 to 65617 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,868 DEBUG Processing 218/537 atomic regions from SNP 65317 to 65918 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,973 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:58:50,042 DEBUG Processing 219/537 atomic regions from SNP 65618 to 66219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,221 DEBUG Processing 220/537 atomic regions from SNP 65919 to 66520 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,402 DEBUG Processing 221/537 atomic regions from SNP 66220 to 66821 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,579 DEBUG Processing 222/537 atomic regions from SNP 66521 to 67122 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,755 DEBUG Processing 223/537 atomic regions from SNP 66822 to 67423 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,929 DEBUG Processing 224/537 atomic regions from SNP 67123 to 67724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,103 DEBUG Processing 225/537 atomic regions from SNP 67424 to 68025 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,278 DEBUG Processing 226/537 atomic regions from SNP 67725 to 68326 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,452 DEBUG Processing 227/537 atomic regions from SNP 68026 to 68627 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,639 DEBUG Processing 228/537 atomic regions from SNP 68327 to 68928 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,854 DEBUG Processing 229/537 atomic regions from SNP 68628 to 69229 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,065 DEBUG Processing 230/537 atomic regions from SNP 68929 to 69530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,246 DEBUG Processing 231/537 atomic regions from SNP 69230 to 69831 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,423 DEBUG Processing 232/537 atomic regions from SNP 69531 to 70132 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,600 DEBUG Processing 233/537 atomic regions from SNP 69832 to 70433 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,776 DEBUG Processing 234/537 atomic regions from SNP 70133 to 70734 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,966 DEBUG Processing 235/537 atomic regions from SNP 70434 to 71035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,140 DEBUG Processing 236/537 atomic regions from SNP 70735 to 71336 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,320 DEBUG Processing 237/537 atomic regions from SNP 71036 to 71637 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,492 DEBUG Processing 238/537 atomic regions from SNP 71337 to 71938 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,671 DEBUG Processing 239/537 atomic regions from SNP 71638 to 72239 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,858 DEBUG Processing 240/537 atomic regions from SNP 71939 to 72540 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,057 DEBUG Processing 241/537 atomic regions from SNP 72240 to 72841 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,262 DEBUG Processing 242/537 atomic regions from SNP 72541 to 73142 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,469 DEBUG Processing 243/537 atomic regions from SNP 72842 to 73443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,668 DEBUG Processing 244/537 atomic regions from SNP 73143 to 73744 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,888 DEBUG Processing 245/537 atomic regions from SNP 73444 to 74045 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,096 DEBUG Processing 246/537 atomic regions from SNP 73745 to 74346 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,300 DEBUG Processing 247/537 atomic regions from SNP 74046 to 74647 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,515 DEBUG Processing 248/537 atomic regions from SNP 74347 to 74948 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,728 DEBUG Processing 249/537 atomic regions from SNP 74648 to 75249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,940 DEBUG Processing 250/537 atomic regions from SNP 74949 to 75550 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,134 DEBUG Processing 251/537 atomic regions from SNP 75250 to 75851 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,321 DEBUG Processing 252/537 atomic regions from SNP 75551 to 76152 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,532 DEBUG Processing 253/537 atomic regions from SNP 75852 to 76453 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,744 DEBUG Processing 254/537 atomic regions from SNP 76153 to 76754 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,958 DEBUG Processing 255/537 atomic regions from SNP 76454 to 77055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,174 DEBUG Processing 256/537 atomic regions from SNP 76755 to 77356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,341 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:58:57,342 DEBUG chr18: Signal quantile: 0.993. signal threshold: 17. Best RMSEA: 0.016 2025-01-31 09:58:57,387 DEBUG Processing 257/537 atomic regions from SNP 77056 to 77657 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,592 DEBUG Processing 258/537 atomic regions from SNP 77357 to 77958 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,784 DEBUG Processing 259/537 atomic regions from SNP 77658 to 78259 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,988 DEBUG Processing 260/537 atomic regions from SNP 77959 to 78560 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,176 DEBUG Processing 261/537 atomic regions from SNP 78260 to 78861 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,360 DEBUG Processing 262/537 atomic regions from SNP 78561 to 79162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,535 DEBUG Processing 263/537 atomic regions from SNP 78862 to 79462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,710 DEBUG Processing 264/537 atomic regions from SNP 79162 to 79762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,864 DEBUG chr18 total SNP count: 157441 2025-01-31 09:58:58,864 DEBUG chr18 length: 90702639 2025-01-31 09:58:58,864 DEBUG ----------------------------------------- 2025-01-31 09:58:58,864 INFO Processing SNPs in chr18 2025-01-31 09:58:58,901 DEBUG Processing 265/537 atomic regions from SNP 79462 to 80062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,020 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 157441)] 2025-01-31 09:58:59,081 DEBUG Processing 266/537 atomic regions from SNP 79762 to 80362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,125 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:59,264 DEBUG Processing 267/537 atomic regions from SNP 80062 to 80662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,445 DEBUG Processing 268/537 atomic regions from SNP 80362 to 80962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,624 DEBUG Processing 269/537 atomic regions from SNP 80662 to 81262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,809 DEBUG Processing 270/537 atomic regions from SNP 80962 to 81562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,984 DEBUG Processing 271/537 atomic regions from SNP 81262 to 81862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,163 DEBUG Processing 272/537 atomic regions from SNP 81562 to 82162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,339 DEBUG Processing 273/537 atomic regions from SNP 81862 to 82462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,514 DEBUG Processing 274/537 atomic regions from SNP 82162 to 82762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,692 DEBUG Processing 275/537 atomic regions from SNP 82462 to 83062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,869 DEBUG Processing 276/537 atomic regions from SNP 82762 to 83362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,045 DEBUG Processing 277/537 atomic regions from SNP 83062 to 83662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,222 DEBUG Processing 278/537 atomic regions from SNP 83362 to 83962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,449 DEBUG Processing 279/537 atomic regions from SNP 83662 to 84262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,636 DEBUG Processing 280/537 atomic regions from SNP 83962 to 84562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,818 DEBUG Processing 281/537 atomic regions from SNP 84262 to 84862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,906 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:59:01,907 DEBUG chr19: Signal quantile: 0.986. signal threshold: 19. Best RMSEA: 0.011 2025-01-31 09:59:02,002 DEBUG Processing 282/537 atomic regions from SNP 84562 to 85162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,181 DEBUG Processing 283/537 atomic regions from SNP 84862 to 85462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,362 DEBUG Processing 284/537 atomic regions from SNP 85162 to 85762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,546 DEBUG Processing 285/537 atomic regions from SNP 85462 to 86062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,719 DEBUG Processing 286/537 atomic regions from SNP 85762 to 86362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,892 DEBUG Processing 287/537 atomic regions from SNP 86062 to 86662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,950 DEBUG chr19 total SNP count: 105264 2025-01-31 09:59:02,950 DEBUG chr19 length: 61431566 2025-01-31 09:59:02,950 DEBUG ----------------------------------------- 2025-01-31 09:59:02,950 INFO Processing SNPs in chr19 2025-01-31 09:59:03,057 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 105264)] 2025-01-31 09:59:03,066 DEBUG Processing 288/537 atomic regions from SNP 86362 to 86962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,128 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:59:03,240 DEBUG Processing 289/537 atomic regions from SNP 86662 to 87262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,412 DEBUG Processing 290/537 atomic regions from SNP 86962 to 87562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,597 DEBUG Processing 291/537 atomic regions from SNP 87262 to 87862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,771 DEBUG Processing 292/537 atomic regions from SNP 87562 to 88162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,944 DEBUG Processing 293/537 atomic regions from SNP 87862 to 88462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,112 DEBUG Processing 294/537 atomic regions from SNP 88162 to 88762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,282 DEBUG Processing 295/537 atomic regions from SNP 88462 to 89062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,451 DEBUG Processing 296/537 atomic regions from SNP 88762 to 89362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,621 DEBUG Processing 297/537 atomic regions from SNP 89062 to 89662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,787 DEBUG Processing 298/537 atomic regions from SNP 89362 to 89962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,958 DEBUG Processing 299/537 atomic regions from SNP 89662 to 90262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,125 DEBUG Processing 300/537 atomic regions from SNP 89962 to 90562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,294 DEBUG Processing 301/537 atomic regions from SNP 90262 to 90862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,466 DEBUG Processing 302/537 atomic regions from SNP 90562 to 91162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,640 DEBUG Processing 303/537 atomic regions from SNP 90862 to 91462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,838 DEBUG Processing 304/537 atomic regions from SNP 91162 to 91762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,046 DEBUG Processing 305/537 atomic regions from SNP 91462 to 92062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,254 DEBUG Processing 306/537 atomic regions from SNP 91762 to 92362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,460 DEBUG Processing 307/537 atomic regions from SNP 92062 to 92662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,667 DEBUG Processing 308/537 atomic regions from SNP 92362 to 92962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,894 DEBUG Processing 309/537 atomic regions from SNP 92662 to 93262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,104 DEBUG Processing 310/537 atomic regions from SNP 92962 to 93562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,321 DEBUG Processing 311/537 atomic regions from SNP 93262 to 93862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,519 DEBUG Processing 312/537 atomic regions from SNP 93562 to 94162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,710 DEBUG Processing 313/537 atomic regions from SNP 93862 to 94462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,891 DEBUG Processing 314/537 atomic regions from SNP 94162 to 94762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,083 DEBUG Processing 315/537 atomic regions from SNP 94462 to 95062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,280 DEBUG Processing 316/537 atomic regions from SNP 94762 to 95362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,456 DEBUG Processing 317/537 atomic regions from SNP 95062 to 95662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,627 DEBUG Processing 318/537 atomic regions from SNP 95362 to 95962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,800 DEBUG Processing 319/537 atomic regions from SNP 95662 to 96262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,979 DEBUG Processing 320/537 atomic regions from SNP 95962 to 96562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,150 DEBUG Processing 321/537 atomic regions from SNP 96262 to 96862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,326 DEBUG Processing 322/537 atomic regions from SNP 96562 to 97162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,498 DEBUG Processing 323/537 atomic regions from SNP 96862 to 97462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,669 DEBUG Processing 324/537 atomic regions from SNP 97162 to 97762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,839 DEBUG Processing 325/537 atomic regions from SNP 97462 to 98062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,011 DEBUG Processing 326/537 atomic regions from SNP 97762 to 98362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,181 DEBUG Processing 327/537 atomic regions from SNP 98062 to 98662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,352 DEBUG Processing 328/537 atomic regions from SNP 98362 to 98962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,523 DEBUG Processing 329/537 atomic regions from SNP 98662 to 99262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,694 DEBUG Processing 330/537 atomic regions from SNP 98962 to 99562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,875 DEBUG Processing 331/537 atomic regions from SNP 99262 to 99862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,049 DEBUG Processing 332/537 atomic regions from SNP 99562 to 100162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,222 DEBUG Processing 333/537 atomic regions from SNP 99862 to 100462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,398 DEBUG Processing 334/537 atomic regions from SNP 100162 to 100762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,571 DEBUG Processing 335/537 atomic regions from SNP 100462 to 101062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,743 DEBUG Processing 336/537 atomic regions from SNP 100762 to 101362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,917 DEBUG Processing 337/537 atomic regions from SNP 101062 to 101662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,094 DEBUG Processing 338/537 atomic regions from SNP 101362 to 101962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,265 DEBUG Processing 339/537 atomic regions from SNP 101662 to 102262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,436 DEBUG Processing 340/537 atomic regions from SNP 101962 to 102562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,616 DEBUG Processing 341/537 atomic regions from SNP 102262 to 102862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,791 DEBUG Processing 342/537 atomic regions from SNP 102562 to 103162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,969 DEBUG Processing 343/537 atomic regions from SNP 102862 to 103462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,140 DEBUG Processing 344/537 atomic regions from SNP 103162 to 103762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,311 DEBUG Processing 345/537 atomic regions from SNP 103462 to 104062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,485 DEBUG Processing 346/537 atomic regions from SNP 103762 to 104362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,659 DEBUG Processing 347/537 atomic regions from SNP 104062 to 104662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,837 DEBUG Processing 348/537 atomic regions from SNP 104362 to 104962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,012 DEBUG Processing 349/537 atomic regions from SNP 104662 to 105262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,186 DEBUG Processing 350/537 atomic regions from SNP 104962 to 105562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,359 DEBUG Processing 351/537 atomic regions from SNP 105262 to 105862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,530 DEBUG Processing 352/537 atomic regions from SNP 105562 to 106162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,702 DEBUG Processing 353/537 atomic regions from SNP 105862 to 106462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,880 DEBUG Processing 354/537 atomic regions from SNP 106162 to 106762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,051 DEBUG Processing 355/537 atomic regions from SNP 106462 to 107062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,224 DEBUG Processing 356/537 atomic regions from SNP 106762 to 107362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,400 DEBUG Processing 357/537 atomic regions from SNP 107062 to 107662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,579 DEBUG Processing 358/537 atomic regions from SNP 107362 to 107962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,746 DEBUG Processing 359/537 atomic regions from SNP 107662 to 108262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,899 DEBUG Segmenting atomic regions: 2025-01-31 09:59:15,915 DEBUG Processing 360/537 atomic regions from SNP 107962 to 108562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,945 DEBUG Processing 1/349 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,084 DEBUG Processing 361/537 atomic regions from SNP 108262 to 108862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,116 DEBUG Processing 2/349 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,267 DEBUG Processing 362/537 atomic regions from SNP 108562 to 109162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,290 DEBUG Processing 3/349 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,460 DEBUG Processing 363/537 atomic regions from SNP 108862 to 109462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,467 DEBUG Processing 4/349 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,642 DEBUG Processing 5/349 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,656 DEBUG Processing 364/537 atomic regions from SNP 109162 to 109762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,826 DEBUG Processing 6/349 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,860 DEBUG Processing 365/537 atomic regions from SNP 109462 to 110062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,008 DEBUG Processing 7/349 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,037 DEBUG Processing 366/537 atomic regions from SNP 109762 to 110362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,186 DEBUG Processing 8/349 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,206 DEBUG Processing 367/537 atomic regions from SNP 110062 to 110662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,358 DEBUG Processing 9/349 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,375 DEBUG Processing 368/537 atomic regions from SNP 110362 to 110962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,535 DEBUG Processing 10/349 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,544 DEBUG Processing 369/537 atomic regions from SNP 110662 to 111262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,709 DEBUG Processing 11/349 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,715 DEBUG Processing 370/537 atomic regions from SNP 110962 to 111562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,860 DEBUG Segmenting atomic regions: 2025-01-31 09:59:17,883 DEBUG Processing 12/349 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,884 DEBUG Processing 371/537 atomic regions from SNP 111262 to 111862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,929 DEBUG Processing 1/523 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,052 DEBUG Processing 372/537 atomic regions from SNP 111562 to 112162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,059 DEBUG Processing 13/349 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,119 DEBUG Processing 2/523 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,225 DEBUG Processing 373/537 atomic regions from SNP 111862 to 112462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,238 DEBUG Processing 14/349 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,309 DEBUG Processing 3/523 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,395 DEBUG Processing 374/537 atomic regions from SNP 112162 to 112762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,418 DEBUG Processing 15/349 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,479 DEBUG Processing 4/523 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,564 DEBUG Processing 375/537 atomic regions from SNP 112462 to 113062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,591 DEBUG Processing 16/349 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,647 DEBUG Processing 5/523 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,734 DEBUG Processing 376/537 atomic regions from SNP 112762 to 113362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,769 DEBUG Processing 17/349 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,816 DEBUG Processing 6/523 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,905 DEBUG Processing 377/537 atomic regions from SNP 113062 to 113662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,945 DEBUG Processing 18/349 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,985 DEBUG Processing 7/523 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,074 DEBUG Processing 378/537 atomic regions from SNP 113362 to 113962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,124 DEBUG Processing 19/349 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,154 DEBUG Processing 8/523 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,247 DEBUG Processing 379/537 atomic regions from SNP 113662 to 114262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,310 DEBUG Processing 20/349 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,332 DEBUG Processing 9/523 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,418 DEBUG Processing 380/537 atomic regions from SNP 113962 to 114562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,485 DEBUG Processing 21/349 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,519 DEBUG Processing 10/523 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,585 DEBUG Processing 381/537 atomic regions from SNP 114262 to 114862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,668 DEBUG Processing 22/349 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,705 DEBUG Processing 11/523 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,760 DEBUG Processing 382/537 atomic regions from SNP 114562 to 115162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,836 DEBUG Processing 23/349 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,896 DEBUG Processing 12/523 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,929 DEBUG Processing 383/537 atomic regions from SNP 114862 to 115462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,009 DEBUG Processing 24/349 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,080 DEBUG Processing 13/523 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,100 DEBUG Processing 384/537 atomic regions from SNP 115162 to 115762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,189 DEBUG Processing 25/349 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,275 DEBUG Processing 14/523 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,278 DEBUG Processing 385/537 atomic regions from SNP 115462 to 116062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,366 DEBUG Processing 26/349 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,450 DEBUG Processing 386/537 atomic regions from SNP 115762 to 116362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,461 DEBUG Processing 15/523 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,538 DEBUG Processing 27/349 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,620 DEBUG Processing 387/537 atomic regions from SNP 116062 to 116662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,646 DEBUG Processing 16/523 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,700 DEBUG Processing 28/349 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,795 DEBUG Processing 388/537 atomic regions from SNP 116362 to 116962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,831 DEBUG Processing 17/523 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,844 DEBUG Processing 29/349 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,966 DEBUG Processing 389/537 atomic regions from SNP 116662 to 117262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,988 DEBUG Processing 30/349 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,012 DEBUG Processing 18/523 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,138 DEBUG Processing 31/349 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,145 DEBUG Processing 390/537 atomic regions from SNP 116962 to 117562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,212 DEBUG Processing 19/523 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,282 DEBUG Processing 32/349 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,315 DEBUG Processing 391/537 atomic regions from SNP 117262 to 117862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,388 DEBUG Processing 20/523 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,448 DEBUG Processing 33/349 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,485 DEBUG Processing 392/537 atomic regions from SNP 117562 to 118162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,577 DEBUG Processing 21/523 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,631 DEBUG Processing 34/349 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,677 DEBUG Processing 393/537 atomic regions from SNP 117862 to 118462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,748 DEBUG Processing 22/523 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,811 DEBUG Processing 35/349 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,873 DEBUG Processing 394/537 atomic regions from SNP 118162 to 118762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,918 DEBUG Processing 23/523 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,975 DEBUG Processing 36/349 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,073 DEBUG Processing 395/537 atomic regions from SNP 118462 to 119062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,084 DEBUG Processing 24/523 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,118 DEBUG Processing 37/349 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,252 DEBUG Processing 25/523 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,265 DEBUG Processing 38/349 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,274 DEBUG Processing 396/537 atomic regions from SNP 118762 to 119362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,419 DEBUG Processing 26/523 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,423 DEBUG Processing 39/349 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,455 DEBUG Processing 397/537 atomic regions from SNP 119062 to 119662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,588 DEBUG Processing 27/523 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,604 DEBUG Processing 40/349 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,654 DEBUG Processing 398/537 atomic regions from SNP 119362 to 119962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,756 DEBUG Processing 28/523 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,786 DEBUG Processing 41/349 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,844 DEBUG Processing 399/537 atomic regions from SNP 119662 to 120262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,923 DEBUG Processing 29/523 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,965 DEBUG Processing 42/349 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,015 DEBUG Processing 400/537 atomic regions from SNP 119962 to 120562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,089 DEBUG Processing 30/523 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,138 DEBUG Processing 43/349 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,185 DEBUG Processing 401/537 atomic regions from SNP 120262 to 120862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,255 DEBUG Processing 31/523 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,313 DEBUG Processing 44/349 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,355 DEBUG Processing 402/537 atomic regions from SNP 120562 to 121162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,421 DEBUG Processing 32/523 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,487 DEBUG Processing 45/349 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,527 DEBUG Processing 403/537 atomic regions from SNP 120862 to 121462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,586 DEBUG Processing 33/523 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,655 DEBUG Processing 46/349 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,706 DEBUG Processing 404/537 atomic regions from SNP 121162 to 121762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,757 DEBUG Processing 34/523 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,807 DEBUG Processing 47/349 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,886 DEBUG Processing 405/537 atomic regions from SNP 121462 to 122062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,927 DEBUG Processing 35/523 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,950 DEBUG Processing 48/349 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,062 DEBUG Processing 406/537 atomic regions from SNP 121762 to 122362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,092 DEBUG Processing 36/523 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,095 DEBUG Processing 49/349 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,234 DEBUG Processing 407/537 atomic regions from SNP 122062 to 122662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,241 DEBUG Processing 50/349 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,268 DEBUG Processing 37/523 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,390 DEBUG Processing 51/349 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,411 DEBUG Processing 408/537 atomic regions from SNP 122362 to 122962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,462 DEBUG Processing 38/523 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,561 DEBUG Processing 52/349 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,585 DEBUG Processing 409/537 atomic regions from SNP 122662 to 123262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,633 DEBUG Processing 39/523 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,715 DEBUG Processing 53/349 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,761 DEBUG Processing 410/537 atomic regions from SNP 122962 to 123562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,799 DEBUG Processing 40/523 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,859 DEBUG Processing 54/349 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,933 DEBUG Processing 411/537 atomic regions from SNP 123262 to 123862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,966 DEBUG Processing 41/523 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,003 DEBUG Processing 55/349 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,105 DEBUG Processing 412/537 atomic regions from SNP 123562 to 124162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,145 DEBUG Processing 42/523 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,148 DEBUG Processing 56/349 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,278 DEBUG Processing 413/537 atomic regions from SNP 123862 to 124462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,294 DEBUG Processing 57/349 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,314 DEBUG Processing 43/523 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,445 DEBUG Processing 58/349 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,459 DEBUG Processing 414/537 atomic regions from SNP 124162 to 124762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,502 DEBUG Processing 44/523 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,594 DEBUG Processing 59/349 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,650 DEBUG Processing 415/537 atomic regions from SNP 124462 to 125062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,694 DEBUG Processing 45/523 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,743 DEBUG Processing 60/349 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,821 DEBUG Processing 416/537 atomic regions from SNP 124762 to 125362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,863 DEBUG Processing 46/523 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,892 DEBUG Processing 61/349 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,994 DEBUG Processing 417/537 atomic regions from SNP 125062 to 125662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,034 DEBUG Processing 47/523 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,044 DEBUG Processing 62/349 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,168 DEBUG Processing 418/537 atomic regions from SNP 125362 to 125962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,190 DEBUG Processing 63/349 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,203 DEBUG Processing 48/523 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,337 DEBUG Processing 64/349 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,340 DEBUG Processing 419/537 atomic regions from SNP 125662 to 126262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,374 DEBUG Processing 49/523 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,484 DEBUG Processing 65/349 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,514 DEBUG Processing 420/537 atomic regions from SNP 125962 to 126562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,546 DEBUG Processing 50/523 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,631 DEBUG Processing 66/349 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,685 DEBUG Processing 421/537 atomic regions from SNP 126262 to 126862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,712 DEBUG Processing 51/523 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,773 DEBUG Processing 67/349 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,858 DEBUG Processing 422/537 atomic regions from SNP 126562 to 127162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,879 DEBUG Processing 52/523 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,917 DEBUG Processing 68/349 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,029 DEBUG Processing 423/537 atomic regions from SNP 126862 to 127462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,047 DEBUG Processing 53/523 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,062 DEBUG Processing 69/349 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,202 DEBUG Processing 424/537 atomic regions from SNP 127162 to 127762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,209 DEBUG Processing 70/349 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,238 DEBUG Processing 54/523 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,354 DEBUG Processing 71/349 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,376 DEBUG Processing 425/537 atomic regions from SNP 127462 to 128062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,405 DEBUG Processing 55/523 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,499 DEBUG Processing 72/349 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,547 DEBUG Processing 426/537 atomic regions from SNP 127762 to 128362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,571 DEBUG Processing 56/523 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,643 DEBUG Processing 73/349 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,719 DEBUG Processing 427/537 atomic regions from SNP 128062 to 128662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,738 DEBUG Processing 57/523 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,785 DEBUG Processing 74/349 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,887 DEBUG Processing 428/537 atomic regions from SNP 128362 to 128962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,912 DEBUG Processing 58/523 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,943 DEBUG Processing 75/349 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,057 DEBUG Processing 429/537 atomic regions from SNP 128662 to 129262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,082 DEBUG Processing 59/523 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,103 DEBUG Processing 76/349 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,230 DEBUG Processing 430/537 atomic regions from SNP 128962 to 129562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,250 DEBUG Processing 60/523 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,254 DEBUG Processing 77/349 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,407 DEBUG Processing 431/537 atomic regions from SNP 129262 to 129862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,410 DEBUG Processing 78/349 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,422 DEBUG Processing 61/523 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,558 DEBUG Processing 79/349 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,583 DEBUG Processing 432/537 atomic regions from SNP 129562 to 130162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,591 DEBUG Processing 62/523 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,704 DEBUG Processing 80/349 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,756 DEBUG Processing 433/537 atomic regions from SNP 129862 to 130462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,758 DEBUG Processing 63/523 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,847 DEBUG Processing 81/349 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,925 DEBUG Processing 64/523 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,929 DEBUG Processing 434/537 atomic regions from SNP 130162 to 130762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,990 DEBUG Processing 82/349 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,094 DEBUG Processing 65/523 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,100 DEBUG Processing 435/537 atomic regions from SNP 130462 to 131062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,136 DEBUG Processing 83/349 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,260 DEBUG Processing 66/523 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,270 DEBUG Processing 436/537 atomic regions from SNP 130762 to 131362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,285 DEBUG Processing 84/349 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,428 DEBUG Processing 67/523 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,429 DEBUG Processing 85/349 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,443 DEBUG Processing 437/537 atomic regions from SNP 131062 to 131662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,577 DEBUG Processing 86/349 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,596 DEBUG Processing 68/523 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,617 DEBUG Processing 438/537 atomic regions from SNP 131362 to 131962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,720 DEBUG Processing 87/349 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,764 DEBUG Processing 69/523 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,795 DEBUG Processing 439/537 atomic regions from SNP 131662 to 132262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,864 DEBUG Processing 88/349 atomic regions from SNP 26187 to 26788 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,932 DEBUG Processing 70/523 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,979 DEBUG Processing 440/537 atomic regions from SNP 131962 to 132562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,005 DEBUG Processing 89/349 atomic regions from SNP 26488 to 27089 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,103 DEBUG Processing 71/523 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,159 DEBUG Processing 90/349 atomic regions from SNP 26789 to 27390 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,173 DEBUG Processing 441/537 atomic regions from SNP 132262 to 132862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,277 DEBUG Processing 72/523 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,312 DEBUG Processing 91/349 atomic regions from SNP 27090 to 27691 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,352 DEBUG Processing 442/537 atomic regions from SNP 132562 to 133162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,444 DEBUG Processing 73/523 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,466 DEBUG Processing 92/349 atomic regions from SNP 27391 to 27992 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,525 DEBUG Processing 443/537 atomic regions from SNP 132862 to 133462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,609 DEBUG Processing 93/349 atomic regions from SNP 27692 to 28293 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,611 DEBUG Processing 74/523 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,698 DEBUG Processing 444/537 atomic regions from SNP 133162 to 133762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,755 DEBUG Processing 94/349 atomic regions from SNP 27993 to 28594 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,781 DEBUG Processing 75/523 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,869 DEBUG Processing 445/537 atomic regions from SNP 133462 to 134062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,901 DEBUG Processing 95/349 atomic regions from SNP 28294 to 28895 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,950 DEBUG Processing 76/523 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,041 DEBUG Processing 446/537 atomic regions from SNP 133762 to 134362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,048 DEBUG Processing 96/349 atomic regions from SNP 28595 to 29196 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,118 DEBUG Processing 77/523 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,196 DEBUG Processing 97/349 atomic regions from SNP 28896 to 29497 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,213 DEBUG Processing 447/537 atomic regions from SNP 134062 to 134662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,290 DEBUG Processing 78/523 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,352 DEBUG Processing 98/349 atomic regions from SNP 29197 to 29798 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,392 DEBUG Processing 448/537 atomic regions from SNP 134362 to 134962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,457 DEBUG Processing 79/523 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,503 DEBUG Processing 99/349 atomic regions from SNP 29498 to 30099 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,589 DEBUG Processing 449/537 atomic regions from SNP 134662 to 135262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,628 DEBUG Processing 80/523 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,651 DEBUG Processing 100/349 atomic regions from SNP 29799 to 30400 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,786 DEBUG Processing 450/537 atomic regions from SNP 134962 to 135562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,797 DEBUG Processing 101/349 atomic regions from SNP 30100 to 30701 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,798 DEBUG Processing 81/523 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,944 DEBUG Processing 102/349 atomic regions from SNP 30401 to 31002 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,966 DEBUG Processing 82/523 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,977 DEBUG Processing 451/537 atomic regions from SNP 135262 to 135862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,095 DEBUG Processing 103/349 atomic regions from SNP 30702 to 31303 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,135 DEBUG Processing 83/523 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,169 DEBUG Processing 452/537 atomic regions from SNP 135562 to 136162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,239 DEBUG Processing 104/349 atomic regions from SNP 31003 to 31604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,301 DEBUG Processing 84/523 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,353 DEBUG Processing 453/537 atomic regions from SNP 135862 to 136462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,385 DEBUG Processing 105/349 atomic regions from SNP 31304 to 31905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,468 DEBUG Processing 85/523 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,527 DEBUG Processing 454/537 atomic regions from SNP 136162 to 136762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,529 DEBUG Processing 106/349 atomic regions from SNP 31605 to 32206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,634 DEBUG Processing 86/523 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,675 DEBUG Processing 107/349 atomic regions from SNP 31906 to 32507 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,699 DEBUG Processing 455/537 atomic regions from SNP 136462 to 137062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,800 DEBUG Processing 87/523 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,822 DEBUG Processing 108/349 atomic regions from SNP 32207 to 32808 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,871 DEBUG Processing 456/537 atomic regions from SNP 136762 to 137362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,968 DEBUG Processing 88/523 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,969 DEBUG Processing 109/349 atomic regions from SNP 32508 to 33109 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,043 DEBUG Processing 457/537 atomic regions from SNP 137062 to 137662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,113 DEBUG Processing 110/349 atomic regions from SNP 32809 to 33410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,133 DEBUG Processing 89/523 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,214 DEBUG Processing 458/537 atomic regions from SNP 137362 to 137962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,259 DEBUG Processing 111/349 atomic regions from SNP 33110 to 33711 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,299 DEBUG Processing 90/523 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,386 DEBUG Processing 459/537 atomic regions from SNP 137662 to 138262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,405 DEBUG Processing 112/349 atomic regions from SNP 33411 to 34012 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,463 DEBUG Processing 91/523 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,555 DEBUG Processing 113/349 atomic regions from SNP 33712 to 34313 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,563 DEBUG Processing 460/537 atomic regions from SNP 137962 to 138562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,632 DEBUG Processing 92/523 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,703 DEBUG Processing 114/349 atomic regions from SNP 34013 to 34614 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,737 DEBUG Processing 461/537 atomic regions from SNP 138262 to 138862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,799 DEBUG Processing 93/523 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,850 DEBUG Processing 115/349 atomic regions from SNP 34314 to 34915 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,909 DEBUG Processing 462/537 atomic regions from SNP 138562 to 139162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,965 DEBUG Processing 94/523 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,000 DEBUG Processing 116/349 atomic regions from SNP 34615 to 35216 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,082 DEBUG Processing 463/537 atomic regions from SNP 138862 to 139462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,133 DEBUG Processing 95/523 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,147 DEBUG Processing 117/349 atomic regions from SNP 34916 to 35517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,260 DEBUG Processing 464/537 atomic regions from SNP 139162 to 139762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,306 DEBUG Processing 96/523 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,321 DEBUG Processing 118/349 atomic regions from SNP 35217 to 35818 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,431 DEBUG Processing 465/537 atomic regions from SNP 139462 to 140062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,472 DEBUG Processing 97/523 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,484 DEBUG Processing 119/349 atomic regions from SNP 35518 to 36119 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,604 DEBUG Processing 466/537 atomic regions from SNP 139762 to 140362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,632 DEBUG Processing 120/349 atomic regions from SNP 35819 to 36420 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,642 DEBUG Processing 98/523 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,778 DEBUG Processing 121/349 atomic regions from SNP 36120 to 36721 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,779 DEBUG Processing 467/537 atomic regions from SNP 140062 to 140662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,812 DEBUG Processing 99/523 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,926 DEBUG Processing 122/349 atomic regions from SNP 36421 to 37022 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,951 DEBUG Processing 468/537 atomic regions from SNP 140362 to 140962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,979 DEBUG Processing 100/523 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,072 DEBUG Processing 123/349 atomic regions from SNP 36722 to 37323 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,127 DEBUG Processing 469/537 atomic regions from SNP 140662 to 141262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,144 DEBUG Processing 101/523 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,217 DEBUG Processing 124/349 atomic regions from SNP 37023 to 37624 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,303 DEBUG Processing 470/537 atomic regions from SNP 140962 to 141562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,311 DEBUG Processing 102/523 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,381 DEBUG Processing 125/349 atomic regions from SNP 37324 to 37925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,479 DEBUG Processing 103/523 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,496 DEBUG Processing 471/537 atomic regions from SNP 141262 to 141862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,546 DEBUG Processing 126/349 atomic regions from SNP 37625 to 38226 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,653 DEBUG Processing 104/523 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,692 DEBUG Processing 472/537 atomic regions from SNP 141562 to 142162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,716 DEBUG Processing 127/349 atomic regions from SNP 37926 to 38527 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,836 DEBUG Processing 105/523 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,872 DEBUG Processing 128/349 atomic regions from SNP 38227 to 38828 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,892 DEBUG Processing 473/537 atomic regions from SNP 141862 to 142462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,021 DEBUG Processing 129/349 atomic regions from SNP 38528 to 39129 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,031 DEBUG Processing 106/523 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,097 DEBUG Processing 474/537 atomic regions from SNP 142162 to 142762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,166 DEBUG Processing 130/349 atomic regions from SNP 38829 to 39430 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,227 DEBUG Processing 107/523 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,289 DEBUG Processing 475/537 atomic regions from SNP 142462 to 143062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,312 DEBUG Processing 131/349 atomic regions from SNP 39130 to 39731 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,410 DEBUG Processing 108/523 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,456 DEBUG Processing 132/349 atomic regions from SNP 39431 to 40032 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,462 DEBUG Processing 476/537 atomic regions from SNP 142762 to 143362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,575 DEBUG Processing 109/523 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,602 DEBUG Processing 133/349 atomic regions from SNP 39732 to 40333 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,637 DEBUG Processing 477/537 atomic regions from SNP 143062 to 143662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,749 DEBUG Processing 110/523 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,757 DEBUG Processing 134/349 atomic regions from SNP 40033 to 40634 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,826 DEBUG Processing 478/537 atomic regions from SNP 143362 to 143962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,902 DEBUG Processing 135/349 atomic regions from SNP 40334 to 40935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,917 DEBUG Processing 111/523 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,021 DEBUG Processing 479/537 atomic regions from SNP 143662 to 144262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,050 DEBUG Processing 136/349 atomic regions from SNP 40635 to 41236 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,088 DEBUG Processing 112/523 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,198 DEBUG Processing 137/349 atomic regions from SNP 40936 to 41537 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,213 DEBUG Processing 480/537 atomic regions from SNP 143962 to 144562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,254 DEBUG Processing 113/523 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,344 DEBUG Processing 138/349 atomic regions from SNP 41237 to 41838 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,389 DEBUG Processing 481/537 atomic regions from SNP 144262 to 144862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,423 DEBUG Processing 114/523 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,503 DEBUG Processing 139/349 atomic regions from SNP 41538 to 42139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,561 DEBUG Processing 482/537 atomic regions from SNP 144562 to 145162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,591 DEBUG Processing 115/523 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,650 DEBUG Processing 140/349 atomic regions from SNP 41839 to 42440 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,745 DEBUG Processing 483/537 atomic regions from SNP 144862 to 145462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,758 DEBUG Processing 116/523 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,796 DEBUG Processing 141/349 atomic regions from SNP 42140 to 42741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,930 DEBUG Processing 117/523 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,931 DEBUG Processing 484/537 atomic regions from SNP 145162 to 145762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,944 DEBUG Processing 142/349 atomic regions from SNP 42441 to 43042 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,090 DEBUG Processing 143/349 atomic regions from SNP 42742 to 43343 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,097 DEBUG Processing 118/523 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,105 DEBUG Processing 485/537 atomic regions from SNP 145462 to 146062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,240 DEBUG Processing 144/349 atomic regions from SNP 43043 to 43644 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,268 DEBUG Processing 119/523 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,283 DEBUG Processing 486/537 atomic regions from SNP 145762 to 146362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,387 DEBUG Processing 145/349 atomic regions from SNP 43344 to 43945 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,439 DEBUG Processing 120/523 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,491 DEBUG Processing 487/537 atomic regions from SNP 146062 to 146662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,538 DEBUG Processing 146/349 atomic regions from SNP 43645 to 44246 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,606 DEBUG Processing 121/523 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,683 DEBUG Processing 147/349 atomic regions from SNP 43946 to 44547 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,691 DEBUG Processing 488/537 atomic regions from SNP 146362 to 146962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,791 DEBUG Processing 122/523 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,842 DEBUG Processing 148/349 atomic regions from SNP 44247 to 44848 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,893 DEBUG Processing 489/537 atomic regions from SNP 146662 to 147262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,976 DEBUG Processing 123/523 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,985 DEBUG Processing 149/349 atomic regions from SNP 44548 to 45149 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,067 DEBUG Processing 490/537 atomic regions from SNP 146962 to 147562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,130 DEBUG Processing 150/349 atomic regions from SNP 44849 to 45450 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,173 DEBUG Processing 124/523 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,247 DEBUG Processing 491/537 atomic regions from SNP 147262 to 147862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,281 DEBUG Processing 151/349 atomic regions from SNP 45150 to 45751 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,377 DEBUG Processing 125/523 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,436 DEBUG Processing 152/349 atomic regions from SNP 45451 to 46052 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,436 DEBUG Processing 492/537 atomic regions from SNP 147562 to 148162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,555 DEBUG Processing 126/523 atomic regions from SNP 37625 to 38226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,592 DEBUG Processing 153/349 atomic regions from SNP 45752 to 46353 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,614 DEBUG Processing 493/537 atomic regions from SNP 147862 to 148462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,744 DEBUG Processing 127/523 atomic regions from SNP 37926 to 38527 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,746 DEBUG Processing 154/349 atomic regions from SNP 46053 to 46654 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,810 DEBUG Processing 494/537 atomic regions from SNP 148162 to 148762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,917 DEBUG Processing 155/349 atomic regions from SNP 46354 to 46955 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,922 DEBUG Processing 128/523 atomic regions from SNP 38227 to 38828 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,003 DEBUG Processing 495/537 atomic regions from SNP 148462 to 149062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,076 DEBUG Processing 156/349 atomic regions from SNP 46655 to 47256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,088 DEBUG Processing 129/523 atomic regions from SNP 38528 to 39129 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,190 DEBUG Processing 496/537 atomic regions from SNP 148762 to 149362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,230 DEBUG Processing 157/349 atomic regions from SNP 46956 to 47557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,261 DEBUG Processing 130/523 atomic regions from SNP 38829 to 39430 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,379 DEBUG Processing 497/537 atomic regions from SNP 149062 to 149662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,387 DEBUG Processing 158/349 atomic regions from SNP 47257 to 47858 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,430 DEBUG Processing 131/523 atomic regions from SNP 39130 to 39731 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,543 DEBUG Processing 159/349 atomic regions from SNP 47558 to 48159 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,570 DEBUG Processing 498/537 atomic regions from SNP 149362 to 149962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,598 DEBUG Processing 132/523 atomic regions from SNP 39431 to 40032 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,699 DEBUG Processing 160/349 atomic regions from SNP 47859 to 48460 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,769 DEBUG Processing 499/537 atomic regions from SNP 149662 to 150262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,770 DEBUG Processing 133/523 atomic regions from SNP 39732 to 40333 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,848 DEBUG Processing 161/349 atomic regions from SNP 48160 to 48761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,937 DEBUG Processing 134/523 atomic regions from SNP 40033 to 40634 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,943 DEBUG Processing 500/537 atomic regions from SNP 149962 to 150562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,994 DEBUG Processing 162/349 atomic regions from SNP 48461 to 49062 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,107 DEBUG Processing 135/523 atomic regions from SNP 40334 to 40935 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,126 DEBUG Processing 501/537 atomic regions from SNP 150262 to 150862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,142 DEBUG Processing 163/349 atomic regions from SNP 48762 to 49363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,276 DEBUG Processing 136/523 atomic regions from SNP 40635 to 41236 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,295 DEBUG Processing 164/349 atomic regions from SNP 49063 to 49664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,319 DEBUG Processing 502/537 atomic regions from SNP 150562 to 151162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,442 DEBUG Processing 165/349 atomic regions from SNP 49364 to 49965 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,444 DEBUG Processing 137/523 atomic regions from SNP 40936 to 41537 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,492 DEBUG Processing 503/537 atomic regions from SNP 150862 to 151462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,588 DEBUG Processing 166/349 atomic regions from SNP 49665 to 50266 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,613 DEBUG Processing 138/523 atomic regions from SNP 41237 to 41838 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,669 DEBUG Processing 504/537 atomic regions from SNP 151162 to 151762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,733 DEBUG Processing 167/349 atomic regions from SNP 49966 to 50567 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,782 DEBUG Processing 139/523 atomic regions from SNP 41538 to 42139 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,840 DEBUG Processing 505/537 atomic regions from SNP 151462 to 152062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,879 DEBUG Processing 168/349 atomic regions from SNP 50267 to 50868 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,950 DEBUG Processing 140/523 atomic regions from SNP 41839 to 42440 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,012 DEBUG Processing 506/537 atomic regions from SNP 151762 to 152362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,024 DEBUG Processing 169/349 atomic regions from SNP 50568 to 51169 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,118 DEBUG Processing 141/523 atomic regions from SNP 42140 to 42741 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,170 DEBUG Processing 170/349 atomic regions from SNP 50869 to 51470 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,186 DEBUG Processing 507/537 atomic regions from SNP 152062 to 152662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,287 DEBUG Processing 142/523 atomic regions from SNP 42441 to 43042 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,316 DEBUG Processing 171/349 atomic regions from SNP 51170 to 51771 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,360 DEBUG Processing 508/537 atomic regions from SNP 152362 to 152962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,454 DEBUG Processing 143/523 atomic regions from SNP 42742 to 43343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,460 DEBUG Processing 172/349 atomic regions from SNP 51471 to 52072 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,533 DEBUG Processing 509/537 atomic regions from SNP 152662 to 153262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,603 DEBUG Processing 173/349 atomic regions from SNP 51772 to 52373 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,621 DEBUG Processing 144/523 atomic regions from SNP 43043 to 43644 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,706 DEBUG Processing 510/537 atomic regions from SNP 152962 to 153562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,768 DEBUG Processing 174/349 atomic regions from SNP 52073 to 52674 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,789 DEBUG Processing 145/523 atomic regions from SNP 43344 to 43945 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,875 DEBUG Processing 511/537 atomic regions from SNP 153262 to 153862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,940 DEBUG Processing 175/349 atomic regions from SNP 52374 to 52975 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,956 DEBUG Processing 146/523 atomic regions from SNP 43645 to 44246 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,045 DEBUG Processing 512/537 atomic regions from SNP 153562 to 154162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,115 DEBUG Processing 176/349 atomic regions from SNP 52675 to 53276 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,129 DEBUG Processing 147/523 atomic regions from SNP 43946 to 44547 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,220 DEBUG Processing 513/537 atomic regions from SNP 153862 to 154462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,269 DEBUG Processing 177/349 atomic regions from SNP 52976 to 53577 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,296 DEBUG Processing 148/523 atomic regions from SNP 44247 to 44848 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,391 DEBUG Processing 514/537 atomic regions from SNP 154162 to 154762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,421 DEBUG Processing 178/349 atomic regions from SNP 53277 to 53878 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,474 DEBUG Processing 149/523 atomic regions from SNP 44548 to 45149 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,572 DEBUG Processing 179/349 atomic regions from SNP 53578 to 54179 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,575 DEBUG Processing 515/537 atomic regions from SNP 154462 to 155062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,644 DEBUG Processing 150/523 atomic regions from SNP 44849 to 45450 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,722 DEBUG Processing 180/349 atomic regions from SNP 53879 to 54480 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,757 DEBUG Processing 516/537 atomic regions from SNP 154762 to 155362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,821 DEBUG Processing 151/523 atomic regions from SNP 45150 to 45751 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,875 DEBUG Processing 181/349 atomic regions from SNP 54180 to 54781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,932 DEBUG Processing 517/537 atomic regions from SNP 155062 to 155662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,988 DEBUG Processing 152/523 atomic regions from SNP 45451 to 46052 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,020 DEBUG Processing 182/349 atomic regions from SNP 54481 to 55082 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,105 DEBUG Processing 518/537 atomic regions from SNP 155362 to 155962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,159 DEBUG Processing 153/523 atomic regions from SNP 45752 to 46353 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,172 DEBUG Processing 183/349 atomic regions from SNP 54782 to 55383 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,283 DEBUG Processing 519/537 atomic regions from SNP 155662 to 156262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,324 DEBUG Processing 184/349 atomic regions from SNP 55083 to 55684 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,331 DEBUG Processing 154/523 atomic regions from SNP 46053 to 46654 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,455 DEBUG Processing 520/537 atomic regions from SNP 155962 to 156562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,469 DEBUG Processing 185/349 atomic regions from SNP 55384 to 55985 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,500 DEBUG Processing 155/523 atomic regions from SNP 46354 to 46955 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,614 DEBUG Processing 186/349 atomic regions from SNP 55685 to 56286 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,630 DEBUG Processing 521/537 atomic regions from SNP 156262 to 156862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,669 DEBUG Processing 156/523 atomic regions from SNP 46655 to 47256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,764 DEBUG Processing 187/349 atomic regions from SNP 55986 to 56587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,806 DEBUG Processing 522/537 atomic regions from SNP 156562 to 157162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,839 DEBUG Processing 157/523 atomic regions from SNP 46956 to 47557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,906 DEBUG Processing 188/349 atomic regions from SNP 56287 to 56888 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,979 DEBUG Processing 523/537 atomic regions from SNP 156862 to 157462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,007 DEBUG Processing 158/523 atomic regions from SNP 47257 to 47858 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,049 DEBUG Processing 189/349 atomic regions from SNP 56588 to 57189 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,155 DEBUG Processing 524/537 atomic regions from SNP 157162 to 157762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,179 DEBUG Processing 159/523 atomic regions from SNP 47558 to 48159 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,197 DEBUG Processing 190/349 atomic regions from SNP 56889 to 57490 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,327 DEBUG Processing 525/537 atomic regions from SNP 157462 to 158062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,340 DEBUG Processing 191/349 atomic regions from SNP 57190 to 57791 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,348 DEBUG Processing 160/523 atomic regions from SNP 47859 to 48460 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,487 DEBUG Processing 192/349 atomic regions from SNP 57491 to 58092 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,502 DEBUG Processing 526/537 atomic regions from SNP 157762 to 158362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,517 DEBUG Processing 161/523 atomic regions from SNP 48160 to 48761 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,638 DEBUG Processing 193/349 atomic regions from SNP 57792 to 58393 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,679 DEBUG Processing 527/537 atomic regions from SNP 158062 to 158662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,690 DEBUG Processing 162/523 atomic regions from SNP 48461 to 49062 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,789 DEBUG Processing 194/349 atomic regions from SNP 58093 to 58694 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,856 DEBUG Processing 528/537 atomic regions from SNP 158362 to 158962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,864 DEBUG Processing 163/523 atomic regions from SNP 48762 to 49363 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,933 DEBUG Processing 195/349 atomic regions from SNP 58394 to 58995 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,031 DEBUG Processing 529/537 atomic regions from SNP 158662 to 159262 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,034 DEBUG Processing 164/523 atomic regions from SNP 49063 to 49664 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,081 DEBUG Processing 196/349 atomic regions from SNP 58695 to 59296 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,204 DEBUG Processing 165/523 atomic regions from SNP 49364 to 49965 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,204 DEBUG Processing 530/537 atomic regions from SNP 158962 to 159562 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,228 DEBUG Processing 197/349 atomic regions from SNP 58996 to 59597 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,373 DEBUG Processing 198/349 atomic regions from SNP 59297 to 59898 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,374 DEBUG Processing 166/523 atomic regions from SNP 49665 to 50266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,379 DEBUG Processing 531/537 atomic regions from SNP 159262 to 159862 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,533 DEBUG Processing 199/349 atomic regions from SNP 59598 to 60199 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,547 DEBUG Processing 167/523 atomic regions from SNP 49966 to 50567 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,556 DEBUG Processing 532/537 atomic regions from SNP 159562 to 160162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,686 DEBUG Processing 200/349 atomic regions from SNP 59899 to 60500 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,718 DEBUG Processing 168/523 atomic regions from SNP 50267 to 50868 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,734 DEBUG Processing 533/537 atomic regions from SNP 159862 to 160462 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,843 DEBUG Processing 201/349 atomic regions from SNP 60200 to 60801 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,911 DEBUG Processing 534/537 atomic regions from SNP 160162 to 160762 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,917 DEBUG Processing 169/523 atomic regions from SNP 50568 to 51169 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,003 DEBUG Processing 202/349 atomic regions from SNP 60501 to 61102 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,083 DEBUG Processing 535/537 atomic regions from SNP 160462 to 161062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,113 DEBUG Processing 170/523 atomic regions from SNP 50869 to 51470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,158 DEBUG Processing 203/349 atomic regions from SNP 60802 to 61403 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,255 DEBUG Processing 536/537 atomic regions from SNP 160762 to 161362 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,305 DEBUG Processing 171/523 atomic regions from SNP 51170 to 51771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,330 DEBUG Processing 204/349 atomic regions from SNP 61103 to 61704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,427 DEBUG Processing 537/537 atomic regions from SNP 161062 to 161662 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,484 DEBUG Processing 205/349 atomic regions from SNP 61404 to 62005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,490 DEBUG Processing 172/523 atomic regions from SNP 51471 to 52072 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,530 DEBUG Unique SNPs positions in subchromosome 1: 161663 2025-01-31 09:59:47,650 DEBUG Processing 206/349 atomic regions from SNP 61705 to 62306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,676 DEBUG Processing 173/523 atomic regions from SNP 51772 to 52373 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,794 DEBUG Processing 207/349 atomic regions from SNP 62006 to 62607 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,847 DEBUG Processing 174/523 atomic regions from SNP 52073 to 52674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,940 DEBUG Processing 208/349 atomic regions from SNP 62307 to 62908 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,041 DEBUG Processing 175/523 atomic regions from SNP 52374 to 52975 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,083 DEBUG Processing 209/349 atomic regions from SNP 62608 to 63209 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,208 DEBUG Processing 176/523 atomic regions from SNP 52675 to 53276 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,226 DEBUG Processing 210/349 atomic regions from SNP 62909 to 63510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,371 DEBUG Processing 211/349 atomic regions from SNP 63210 to 63811 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,376 DEBUG Processing 177/523 atomic regions from SNP 52976 to 53577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,521 DEBUG Processing 212/349 atomic regions from SNP 63511 to 64112 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,546 DEBUG Processing 178/523 atomic regions from SNP 53277 to 53878 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,664 DEBUG Processing 213/349 atomic regions from SNP 63812 to 64413 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,715 DEBUG Processing 179/523 atomic regions from SNP 53578 to 54179 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,809 DEBUG Processing 214/349 atomic regions from SNP 64113 to 64714 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,883 DEBUG Processing 180/523 atomic regions from SNP 53879 to 54480 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,952 DEBUG Processing 215/349 atomic regions from SNP 64414 to 65015 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,052 DEBUG Processing 181/523 atomic regions from SNP 54180 to 54781 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,096 DEBUG Processing 216/349 atomic regions from SNP 64715 to 65316 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,223 DEBUG Processing 182/523 atomic regions from SNP 54481 to 55082 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,244 DEBUG Processing 217/349 atomic regions from SNP 65016 to 65617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,394 DEBUG Processing 218/349 atomic regions from SNP 65317 to 65918 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,399 DEBUG Processing 183/523 atomic regions from SNP 54782 to 55383 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,542 DEBUG Processing 219/349 atomic regions from SNP 65618 to 66219 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,581 DEBUG Processing 184/523 atomic regions from SNP 55083 to 55684 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,687 DEBUG Processing 220/349 atomic regions from SNP 65919 to 66520 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,774 DEBUG Processing 185/523 atomic regions from SNP 55384 to 55985 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,829 DEBUG Processing 221/349 atomic regions from SNP 66220 to 66821 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,971 DEBUG Processing 186/523 atomic regions from SNP 55685 to 56286 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,989 DEBUG Processing 222/349 atomic regions from SNP 66521 to 67122 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,152 DEBUG Processing 223/349 atomic regions from SNP 66822 to 67423 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,185 DEBUG Processing 187/523 atomic regions from SNP 55986 to 56587 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,315 DEBUG Processing 224/349 atomic regions from SNP 67123 to 67724 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,394 DEBUG Processing 188/523 atomic regions from SNP 56287 to 56888 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,470 DEBUG Processing 225/349 atomic regions from SNP 67424 to 68025 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,600 DEBUG Processing 189/523 atomic regions from SNP 56588 to 57189 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,616 DEBUG Processing 226/349 atomic regions from SNP 67725 to 68326 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,764 DEBUG Processing 227/349 atomic regions from SNP 68026 to 68627 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,802 DEBUG Processing 190/523 atomic regions from SNP 56889 to 57490 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,910 DEBUG Processing 228/349 atomic regions from SNP 68327 to 68928 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,989 DEBUG Processing 191/523 atomic regions from SNP 57190 to 57791 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,069 DEBUG Processing 229/349 atomic regions from SNP 68628 to 69229 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,167 DEBUG Processing 192/523 atomic regions from SNP 57491 to 58092 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,240 DEBUG Processing 230/349 atomic regions from SNP 68929 to 69530 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,366 DEBUG Processing 193/523 atomic regions from SNP 57792 to 58393 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,416 DEBUG Processing 231/349 atomic regions from SNP 69230 to 69831 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,568 DEBUG Processing 194/523 atomic regions from SNP 58093 to 58694 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,590 DEBUG Processing 232/349 atomic regions from SNP 69531 to 70132 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,759 DEBUG Processing 233/349 atomic regions from SNP 69832 to 70433 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,770 DEBUG Processing 195/523 atomic regions from SNP 58394 to 58995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,912 DEBUG Processing 234/349 atomic regions from SNP 70133 to 70734 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,974 DEBUG Processing 196/523 atomic regions from SNP 58695 to 59296 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,065 DEBUG Processing 235/349 atomic regions from SNP 70434 to 71035 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,172 DEBUG Processing 197/523 atomic regions from SNP 58996 to 59597 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,233 DEBUG Processing 236/349 atomic regions from SNP 70735 to 71336 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,375 DEBUG Processing 198/523 atomic regions from SNP 59297 to 59898 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,393 DEBUG Processing 237/349 atomic regions from SNP 71036 to 71637 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,536 DEBUG Processing 238/349 atomic regions from SNP 71337 to 71938 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,575 DEBUG Processing 199/523 atomic regions from SNP 59598 to 60199 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,678 DEBUG Processing 239/349 atomic regions from SNP 71638 to 72239 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,776 DEBUG Processing 200/523 atomic regions from SNP 59899 to 60500 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,819 DEBUG Processing 240/349 atomic regions from SNP 71939 to 72540 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,980 DEBUG Processing 201/523 atomic regions from SNP 60200 to 60801 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,989 DEBUG Processing 241/349 atomic regions from SNP 72240 to 72841 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,159 DEBUG Processing 202/523 atomic regions from SNP 60501 to 61102 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,160 DEBUG Processing 242/349 atomic regions from SNP 72541 to 73142 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,323 DEBUG Processing 243/349 atomic regions from SNP 72842 to 73443 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,329 DEBUG Processing 203/523 atomic regions from SNP 60802 to 61403 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,478 DEBUG Processing 244/349 atomic regions from SNP 73143 to 73744 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,500 DEBUG Processing 204/523 atomic regions from SNP 61103 to 61704 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,633 DEBUG Processing 245/349 atomic regions from SNP 73444 to 74045 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,669 DEBUG Processing 205/523 atomic regions from SNP 61404 to 62005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,812 DEBUG Processing 246/349 atomic regions from SNP 73745 to 74346 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,840 DEBUG Processing 206/523 atomic regions from SNP 61705 to 62306 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,987 DEBUG Processing 247/349 atomic regions from SNP 74046 to 74647 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,034 DEBUG Processing 207/523 atomic regions from SNP 62006 to 62607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,155 DEBUG Processing 248/349 atomic regions from SNP 74347 to 74948 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,233 DEBUG Processing 208/523 atomic regions from SNP 62307 to 62908 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,311 DEBUG Processing 249/349 atomic regions from SNP 74648 to 75249 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,434 DEBUG Processing 209/523 atomic regions from SNP 62608 to 63209 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,473 DEBUG Processing 250/349 atomic regions from SNP 74949 to 75550 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,634 DEBUG Processing 210/523 atomic regions from SNP 62909 to 63510 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,650 DEBUG Processing 251/349 atomic regions from SNP 75250 to 75851 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,819 DEBUG Processing 252/349 atomic regions from SNP 75551 to 76152 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,826 DEBUG Processing 211/523 atomic regions from SNP 63210 to 63811 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,973 DEBUG Processing 253/349 atomic regions from SNP 75852 to 76453 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,997 DEBUG Processing 212/523 atomic regions from SNP 63511 to 64112 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,148 DEBUG Processing 254/349 atomic regions from SNP 76153 to 76754 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,166 DEBUG Processing 213/523 atomic regions from SNP 63812 to 64413 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,321 DEBUG Processing 255/349 atomic regions from SNP 76454 to 77055 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,333 DEBUG Processing 214/523 atomic regions from SNP 64113 to 64714 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,498 DEBUG Processing 256/349 atomic regions from SNP 76755 to 77356 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,512 DEBUG Processing 215/523 atomic regions from SNP 64414 to 65015 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,673 DEBUG Processing 257/349 atomic regions from SNP 77056 to 77657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,681 DEBUG Processing 216/523 atomic regions from SNP 64715 to 65316 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,840 DEBUG Processing 258/349 atomic regions from SNP 77357 to 77958 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,865 DEBUG Processing 217/523 atomic regions from SNP 65016 to 65617 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,020 DEBUG Processing 259/349 atomic regions from SNP 77658 to 78259 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,054 DEBUG Processing 218/523 atomic regions from SNP 65317 to 65918 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,205 DEBUG Processing 260/349 atomic regions from SNP 77959 to 78560 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,228 DEBUG Processing 219/523 atomic regions from SNP 65618 to 66219 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,384 DEBUG Processing 261/349 atomic regions from SNP 78260 to 78861 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,400 DEBUG Processing 220/523 atomic regions from SNP 65919 to 66520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,559 DEBUG Processing 262/349 atomic regions from SNP 78561 to 79162 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,570 DEBUG Processing 221/523 atomic regions from SNP 66220 to 66821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,728 DEBUG Processing 263/349 atomic regions from SNP 78862 to 79463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,737 DEBUG Processing 222/523 atomic regions from SNP 66521 to 67122 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,898 DEBUG Processing 264/349 atomic regions from SNP 79163 to 79763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,908 DEBUG Processing 223/523 atomic regions from SNP 66822 to 67423 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,069 DEBUG Processing 265/349 atomic regions from SNP 79463 to 80063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,077 DEBUG Processing 224/523 atomic regions from SNP 67123 to 67724 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,231 DEBUG Processing 266/349 atomic regions from SNP 79763 to 80363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,244 DEBUG Processing 225/523 atomic regions from SNP 67424 to 68025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,391 DEBUG Processing 267/349 atomic regions from SNP 80063 to 80663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,420 DEBUG Processing 226/523 atomic regions from SNP 67725 to 68326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,538 DEBUG Processing 268/349 atomic regions from SNP 80363 to 80963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,589 DEBUG Processing 227/523 atomic regions from SNP 68026 to 68627 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,681 DEBUG Processing 269/349 atomic regions from SNP 80663 to 81263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,758 DEBUG Processing 228/523 atomic regions from SNP 68327 to 68928 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,822 DEBUG Processing 270/349 atomic regions from SNP 80963 to 81563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,927 DEBUG Processing 229/523 atomic regions from SNP 68628 to 69229 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,965 DEBUG Processing 271/349 atomic regions from SNP 81263 to 81863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,097 DEBUG Processing 230/523 atomic regions from SNP 68929 to 69530 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,108 DEBUG Processing 272/349 atomic regions from SNP 81563 to 82163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,139 DEBUG Subchromosome time: 132.88238024897873, subchromosome SNPs: 161663 2025-01-31 09:59:58,139 DEBUG Estimated BADs: [2.76, 0.92, 11.06, 5.53, 27.65, 11.06, 2.76, 0.69, 1.38, 2.76, 8.29, 2.76, 0.92, 11.06, 0.92, 2.76, 0.55, 2.76, 0.69, 2.76, 5.53, 0.55] SNP counts: [21174, 11950, 10975, 8226, 624, 3738, 1500, 8722, 3325, 2207, 5911, 5100, 7756, 2727, 9024, 24597, 2990, 6606, 2090, 2428, 9887, 10106] SNP IDs counts: [21174, 11950, 10975, 8226, 624, 3738, 1500, 8722, 3325, 2207, 5911, 5100, 7756, 2727, 9024, 24597, 2990, 6606, 2090, 2428, 9887, 10106] Critical gap: 524710bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 15.92Mbp, 23.53Mbp, 29.32Mbp, 33.82Mbp, 34.15Mbp, 36.29Mbp, 37.16Mbp, 42.57Mbp, 44.37Mbp, 45.55Mbp, 48.67Mbp, 51.37Mbp, 55.94Mbp, 57.36Mbp, 62.58Mbp, 76.04Mbp, 77.73Mbp, 81.29Mbp, 82.49Mbp, 83.85Mbp, 89.07Mbp, 94.99Mbp] 2025-01-31 09:59:58,139 DEBUG chr17 time: 132.88291235081851 s 2025-01-31 09:59:58,233 DEBUG chr17: Fitting background model for 22 segments 2025-01-31 09:59:58,254 DEBUG Processing 273/349 atomic regions from SNP 81863 to 82463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,269 DEBUG Processing 231/523 atomic regions from SNP 69230 to 69831 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,400 DEBUG Processing 274/349 atomic regions from SNP 82163 to 82763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,439 DEBUG Processing 232/523 atomic regions from SNP 69531 to 70132 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,543 DEBUG Processing 275/349 atomic regions from SNP 82463 to 83063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,605 DEBUG Processing 233/523 atomic regions from SNP 69832 to 70433 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,685 DEBUG Processing 276/349 atomic regions from SNP 82763 to 83363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,798 DEBUG Processing 234/523 atomic regions from SNP 70133 to 70734 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,827 DEBUG Processing 277/349 atomic regions from SNP 83063 to 83663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,970 DEBUG Processing 278/349 atomic regions from SNP 83363 to 83963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,976 DEBUG Processing 235/523 atomic regions from SNP 70434 to 71035 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,115 DEBUG Processing 279/349 atomic regions from SNP 83663 to 84263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,147 DEBUG Processing 236/523 atomic regions from SNP 70735 to 71336 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,263 DEBUG Processing 280/349 atomic regions from SNP 83963 to 84563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,315 DEBUG Processing 237/523 atomic regions from SNP 71036 to 71637 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,409 DEBUG Processing 281/349 atomic regions from SNP 84263 to 84863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,483 DEBUG Processing 238/523 atomic regions from SNP 71337 to 71938 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,554 DEBUG Processing 282/349 atomic regions from SNP 84563 to 85163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,652 DEBUG Processing 239/523 atomic regions from SNP 71638 to 72239 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,697 DEBUG Processing 283/349 atomic regions from SNP 84863 to 85463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,821 DEBUG Processing 240/523 atomic regions from SNP 71939 to 72540 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,841 DEBUG Processing 284/349 atomic regions from SNP 85163 to 85763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,987 DEBUG Processing 285/349 atomic regions from SNP 85463 to 86063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,990 DEBUG Processing 241/523 atomic regions from SNP 72240 to 72840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,134 DEBUG Processing 286/349 atomic regions from SNP 85763 to 86363 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:00,159 DEBUG Processing 242/523 atomic regions from SNP 72540 to 73140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,285 DEBUG Processing 287/349 atomic regions from SNP 86063 to 86663 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:00,330 DEBUG Processing 243/523 atomic regions from SNP 72840 to 73440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,433 DEBUG Processing 288/349 atomic regions from SNP 86363 to 86963 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:00,499 DEBUG Processing 244/523 atomic regions from SNP 73140 to 73740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,580 DEBUG Processing 289/349 atomic regions from SNP 86663 to 87263 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:00,666 DEBUG Processing 245/523 atomic regions from SNP 73440 to 74040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,724 DEBUG Processing 290/349 atomic regions from SNP 86963 to 87563 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:00,835 DEBUG Processing 246/523 atomic regions from SNP 73740 to 74340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,874 DEBUG Processing 291/349 atomic regions from SNP 87263 to 87863 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,004 DEBUG Processing 247/523 atomic regions from SNP 74040 to 74640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,020 DEBUG Processing 292/349 atomic regions from SNP 87563 to 88163 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,168 DEBUG Processing 293/349 atomic regions from SNP 87863 to 88463 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,173 DEBUG Processing 248/523 atomic regions from SNP 74340 to 74940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,313 DEBUG Processing 294/349 atomic regions from SNP 88163 to 88763 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,342 DEBUG Processing 249/523 atomic regions from SNP 74640 to 75240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,457 DEBUG Processing 295/349 atomic regions from SNP 88463 to 89063 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,508 DEBUG Processing 250/523 atomic regions from SNP 74940 to 75540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,602 DEBUG Processing 296/349 atomic regions from SNP 88763 to 89363 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,676 DEBUG Processing 251/523 atomic regions from SNP 75240 to 75840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,749 DEBUG Processing 297/349 atomic regions from SNP 89063 to 89663 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,849 DEBUG Processing 252/523 atomic regions from SNP 75540 to 76140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,901 DEBUG Processing 298/349 atomic regions from SNP 89363 to 89963 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,017 DEBUG Processing 253/523 atomic regions from SNP 75840 to 76440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,045 DEBUG Processing 299/349 atomic regions from SNP 89663 to 90263 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,187 DEBUG Processing 254/523 atomic regions from SNP 76140 to 76740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,204 DEBUG Processing 300/349 atomic regions from SNP 89963 to 90563 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,355 DEBUG Processing 255/523 atomic regions from SNP 76440 to 77040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,380 DEBUG Processing 301/349 atomic regions from SNP 90263 to 90863 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,522 DEBUG Processing 256/523 atomic regions from SNP 76740 to 77340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,547 DEBUG Processing 302/349 atomic regions from SNP 90563 to 91163 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,690 DEBUG Processing 257/523 atomic regions from SNP 77040 to 77640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,705 DEBUG Processing 303/349 atomic regions from SNP 90863 to 91463 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,863 DEBUG Processing 258/523 atomic regions from SNP 77340 to 77940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,876 DEBUG Processing 304/349 atomic regions from SNP 91163 to 91763 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,048 DEBUG Processing 305/349 atomic regions from SNP 91463 to 92063 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,051 DEBUG Processing 259/523 atomic regions from SNP 77640 to 78240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,198 DEBUG Processing 306/349 atomic regions from SNP 91763 to 92363 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,245 DEBUG Processing 260/523 atomic regions from SNP 77940 to 78540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,344 DEBUG Processing 307/349 atomic regions from SNP 92063 to 92663 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,414 DEBUG Processing 261/523 atomic regions from SNP 78240 to 78840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,488 DEBUG Processing 308/349 atomic regions from SNP 92363 to 92963 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,588 DEBUG Processing 262/523 atomic regions from SNP 78540 to 79140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,633 DEBUG Processing 309/349 atomic regions from SNP 92663 to 93263 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,760 DEBUG Processing 263/523 atomic regions from SNP 78840 to 79440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,778 DEBUG Processing 310/349 atomic regions from SNP 92963 to 93563 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,923 DEBUG Processing 311/349 atomic regions from SNP 93263 to 93863 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,946 DEBUG Processing 264/523 atomic regions from SNP 79140 to 79740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,076 DEBUG Processing 312/349 atomic regions from SNP 93563 to 94163 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:04,138 DEBUG Processing 265/523 atomic regions from SNP 79440 to 80040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,243 DEBUG Processing 313/349 atomic regions from SNP 93863 to 94463 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:04,306 DEBUG Processing 266/523 atomic regions from SNP 79740 to 80340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,390 DEBUG Processing 314/349 atomic regions from SNP 94163 to 94763 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:04,473 DEBUG Processing 267/523 atomic regions from SNP 80040 to 80640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,535 DEBUG Processing 315/349 atomic regions from SNP 94463 to 95063 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:04,639 DEBUG Processing 268/523 atomic regions from SNP 80340 to 80940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,686 DEBUG Processing 316/349 atomic regions from SNP 94763 to 95363 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:04,810 DEBUG Processing 269/523 atomic regions from SNP 80640 to 81240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,842 DEBUG Processing 317/349 atomic regions from SNP 95063 to 95663 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:04,980 DEBUG Processing 270/523 atomic regions from SNP 80940 to 81540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,992 DEBUG Processing 318/349 atomic regions from SNP 95363 to 95963 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:05,138 DEBUG Processing 319/349 atomic regions from SNP 95663 to 96263 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:05,149 DEBUG Processing 271/523 atomic regions from SNP 81240 to 81840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,302 DEBUG Processing 320/349 atomic regions from SNP 95963 to 96563 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:05,316 DEBUG Processing 272/523 atomic regions from SNP 81540 to 82140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,469 DEBUG Processing 321/349 atomic regions from SNP 96263 to 96863 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:05,485 DEBUG Processing 273/523 atomic regions from SNP 81840 to 82440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,629 DEBUG Processing 322/349 atomic regions from SNP 96563 to 97163 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:05,653 DEBUG Processing 274/523 atomic regions from SNP 82140 to 82740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,794 DEBUG Processing 323/349 atomic regions from SNP 96863 to 97463 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:05,824 DEBUG Processing 275/523 atomic regions from SNP 82440 to 83040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,956 DEBUG Processing 324/349 atomic regions from SNP 97163 to 97763 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:05,991 DEBUG Processing 276/523 atomic regions from SNP 82740 to 83340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,102 DEBUG Processing 325/349 atomic regions from SNP 97463 to 98063 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:06,160 DEBUG Processing 277/523 atomic regions from SNP 83040 to 83640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,255 DEBUG Processing 326/349 atomic regions from SNP 97763 to 98363 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:06,328 DEBUG Processing 278/523 atomic regions from SNP 83340 to 83940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,415 DEBUG Processing 327/349 atomic regions from SNP 98063 to 98663 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:06,501 DEBUG Processing 279/523 atomic regions from SNP 83640 to 84240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,575 DEBUG Processing 328/349 atomic regions from SNP 98363 to 98963 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:06,691 DEBUG Processing 280/523 atomic regions from SNP 83940 to 84540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,721 DEBUG Processing 329/349 atomic regions from SNP 98663 to 99263 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:06,868 DEBUG Processing 330/349 atomic regions from SNP 98963 to 99563 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:06,875 DEBUG Processing 281/523 atomic regions from SNP 84240 to 84840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,013 DEBUG Processing 331/349 atomic regions from SNP 99263 to 99863 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:07,043 DEBUG Processing 282/523 atomic regions from SNP 84540 to 85140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,157 DEBUG Processing 332/349 atomic regions from SNP 99563 to 100163 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:07,212 DEBUG Processing 283/523 atomic regions from SNP 84840 to 85440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,303 DEBUG Processing 333/349 atomic regions from SNP 99863 to 100463 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:07,384 DEBUG Processing 284/523 atomic regions from SNP 85140 to 85740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,453 DEBUG Processing 334/349 atomic regions from SNP 100163 to 100763 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:07,555 DEBUG Processing 285/523 atomic regions from SNP 85440 to 86040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,604 DEBUG Processing 335/349 atomic regions from SNP 100463 to 101063 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:07,724 DEBUG Processing 286/523 atomic regions from SNP 85740 to 86340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,749 DEBUG Processing 336/349 atomic regions from SNP 100763 to 101363 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:07,892 DEBUG Processing 287/523 atomic regions from SNP 86040 to 86640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,893 DEBUG Processing 337/349 atomic regions from SNP 101063 to 101663 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:08,039 DEBUG Processing 338/349 atomic regions from SNP 101363 to 101963 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:08,060 DEBUG Processing 288/523 atomic regions from SNP 86340 to 86940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,203 DEBUG Processing 339/349 atomic regions from SNP 101663 to 102263 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:08,227 DEBUG Processing 289/523 atomic regions from SNP 86640 to 87240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,351 DEBUG Processing 340/349 atomic regions from SNP 101963 to 102563 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:08,393 DEBUG Processing 290/523 atomic regions from SNP 86940 to 87540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,495 DEBUG Processing 341/349 atomic regions from SNP 102263 to 102863 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:08,561 DEBUG Processing 291/523 atomic regions from SNP 87240 to 87840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,640 DEBUG Processing 342/349 atomic regions from SNP 102563 to 103163 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:08,731 DEBUG Processing 292/523 atomic regions from SNP 87540 to 88140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,785 DEBUG Processing 343/349 atomic regions from SNP 102863 to 103463 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:08,902 DEBUG Processing 293/523 atomic regions from SNP 87840 to 88440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,933 DEBUG Processing 344/349 atomic regions from SNP 103163 to 103763 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:09,071 DEBUG Processing 294/523 atomic regions from SNP 88140 to 88740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,078 DEBUG Processing 345/349 atomic regions from SNP 103463 to 104063 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:09,231 DEBUG Processing 346/349 atomic regions from SNP 103763 to 104363 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:09,247 DEBUG Processing 295/523 atomic regions from SNP 88440 to 89040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,399 DEBUG Processing 347/349 atomic regions from SNP 104063 to 104663 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:09,434 DEBUG Processing 296/523 atomic regions from SNP 88740 to 89340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,567 DEBUG Processing 348/349 atomic regions from SNP 104363 to 104963 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:09,601 DEBUG Processing 297/523 atomic regions from SNP 89040 to 89640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,720 DEBUG Processing 349/349 atomic regions from SNP 104663 to 105263 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:09,771 DEBUG Processing 298/523 atomic regions from SNP 89340 to 89940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,824 DEBUG Unique SNPs positions in subchromosome 1: 105264 2025-01-31 10:00:09,942 DEBUG Processing 299/523 atomic regions from SNP 89640 to 90240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,110 DEBUG Processing 300/523 atomic regions from SNP 89940 to 90540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,276 DEBUG Processing 301/523 atomic regions from SNP 90240 to 90840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,455 DEBUG Processing 302/523 atomic regions from SNP 90540 to 91140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,633 DEBUG Processing 303/523 atomic regions from SNP 90840 to 91440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,817 DEBUG Processing 304/523 atomic regions from SNP 91140 to 91740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,986 DEBUG Processing 305/523 atomic regions from SNP 91440 to 92040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,174 DEBUG Processing 306/523 atomic regions from SNP 91740 to 92340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,363 DEBUG Processing 307/523 atomic regions from SNP 92040 to 92640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,539 DEBUG Processing 308/523 atomic regions from SNP 92340 to 92940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,713 DEBUG Processing 309/523 atomic regions from SNP 92640 to 93240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,883 DEBUG Processing 310/523 atomic regions from SNP 92940 to 93540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,051 DEBUG Processing 311/523 atomic regions from SNP 93240 to 93840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,222 DEBUG Processing 312/523 atomic regions from SNP 93540 to 94140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,322 DEBUG Subchromosome time: 69.19458149932325, subchromosome SNPs: 105264 2025-01-31 10:00:12,322 DEBUG Estimated BADs: [10.45, 2.61, 13.06, 5.22, 0.87, 5.22, 0.87, 2.61, 1.31, 2.61, 1.31, 2.61, 0.87, 2.61, 0.87, 2.61, 0.52, 5.22, 0.87, 7.84, 2.61, 0.65, 2.61] SNP counts: [8024, 1810, 834, 2976, 1190, 566, 6070, 3916, 9324, 3934, 7611, 2907, 1500, 3019, 4477, 6340, 1206, 5736, 691, 7159, 2668, 6902, 16404] SNP IDs counts: [8024, 1810, 834, 2976, 1190, 566, 6070, 3916, 9324, 3934, 7611, 2907, 1500, 3019, 4477, 6340, 1206, 5736, 691, 7159, 2668, 6902, 16404] Critical gap: 411945bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 7.50Mbp, 8.70Mbp, 9.14Mbp, 11.01Mbp, 11.71Mbp, 12.02Mbp, 15.50Mbp, 17.59Mbp, 22.80Mbp, 24.89Mbp, 29.02Mbp, 30.56Mbp, 31.40Mbp, 33.04Mbp, 35.69Mbp, 39.08Mbp, 39.96Mbp, 43.04Mbp, 43.44Mbp, 47.21Mbp, 48.64Mbp, 52.52Mbp, 61.43Mbp] 2025-01-31 10:00:12,323 DEBUG chr19 time: 69.19500352069736 s 2025-01-31 10:00:12,380 DEBUG chr19: Fitting background model for 23 segments 2025-01-31 10:00:12,390 DEBUG Processing 313/523 atomic regions from SNP 93840 to 94440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,556 DEBUG Processing 314/523 atomic regions from SNP 94140 to 94740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,723 DEBUG Processing 315/523 atomic regions from SNP 94440 to 95040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,890 DEBUG Processing 316/523 atomic regions from SNP 94740 to 95340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,058 DEBUG Processing 317/523 atomic regions from SNP 95040 to 95640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,228 DEBUG Processing 318/523 atomic regions from SNP 95340 to 95940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,414 DEBUG Processing 319/523 atomic regions from SNP 95640 to 96240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,615 DEBUG Processing 320/523 atomic regions from SNP 95940 to 96540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,810 DEBUG Processing 321/523 atomic regions from SNP 96240 to 96840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,002 DEBUG Processing 322/523 atomic regions from SNP 96540 to 97140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,176 DEBUG Processing 323/523 atomic regions from SNP 96840 to 97440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,348 DEBUG Processing 324/523 atomic regions from SNP 97140 to 97740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,517 DEBUG Processing 325/523 atomic regions from SNP 97440 to 98040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,685 DEBUG Processing 326/523 atomic regions from SNP 97740 to 98340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,858 DEBUG Processing 327/523 atomic regions from SNP 98040 to 98640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,029 DEBUG Processing 328/523 atomic regions from SNP 98340 to 98940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,201 DEBUG Processing 329/523 atomic regions from SNP 98640 to 99240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,369 DEBUG Processing 330/523 atomic regions from SNP 98940 to 99540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,538 DEBUG Processing 331/523 atomic regions from SNP 99240 to 99840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,712 DEBUG Processing 332/523 atomic regions from SNP 99540 to 100140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,882 DEBUG Processing 333/523 atomic regions from SNP 99840 to 100440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,052 DEBUG Processing 334/523 atomic regions from SNP 100140 to 100740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,226 DEBUG Processing 335/523 atomic regions from SNP 100440 to 101040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,400 DEBUG Processing 336/523 atomic regions from SNP 100740 to 101340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,568 DEBUG Processing 337/523 atomic regions from SNP 101040 to 101640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,736 DEBUG Processing 338/523 atomic regions from SNP 101340 to 101940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,910 DEBUG Processing 339/523 atomic regions from SNP 101640 to 102240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,135 DEBUG Processing 340/523 atomic regions from SNP 101940 to 102540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,304 DEBUG Processing 341/523 atomic regions from SNP 102240 to 102840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,473 DEBUG Processing 342/523 atomic regions from SNP 102540 to 103140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,667 DEBUG Processing 343/523 atomic regions from SNP 102840 to 103440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,868 DEBUG Processing 344/523 atomic regions from SNP 103140 to 103740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,076 DEBUG Processing 345/523 atomic regions from SNP 103440 to 104040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,279 DEBUG Processing 346/523 atomic regions from SNP 103740 to 104340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,551 DEBUG Processing 347/523 atomic regions from SNP 104040 to 104640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,762 DEBUG Processing 348/523 atomic regions from SNP 104340 to 104940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,970 DEBUG Processing 349/523 atomic regions from SNP 104640 to 105240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,194 DEBUG Processing 350/523 atomic regions from SNP 104940 to 105540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,419 DEBUG Processing 351/523 atomic regions from SNP 105240 to 105840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,614 DEBUG Processing 352/523 atomic regions from SNP 105540 to 106140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,805 DEBUG Processing 353/523 atomic regions from SNP 105840 to 106440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,993 DEBUG Processing 354/523 atomic regions from SNP 106140 to 106740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,163 DEBUG Processing 355/523 atomic regions from SNP 106440 to 107040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,336 DEBUG Processing 356/523 atomic regions from SNP 106740 to 107340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,508 DEBUG Processing 357/523 atomic regions from SNP 107040 to 107640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,683 DEBUG Processing 358/523 atomic regions from SNP 107340 to 107940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,855 DEBUG Processing 359/523 atomic regions from SNP 107640 to 108240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,026 DEBUG Processing 360/523 atomic regions from SNP 107940 to 108540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,198 DEBUG Processing 361/523 atomic regions from SNP 108240 to 108840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,370 DEBUG Processing 362/523 atomic regions from SNP 108540 to 109140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,573 DEBUG Processing 363/523 atomic regions from SNP 108840 to 109440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,755 DEBUG Processing 364/523 atomic regions from SNP 109140 to 109740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,927 DEBUG Processing 365/523 atomic regions from SNP 109440 to 110040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,099 DEBUG Processing 366/523 atomic regions from SNP 109740 to 110340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,273 DEBUG Processing 367/523 atomic regions from SNP 110040 to 110640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,472 DEBUG Processing 368/523 atomic regions from SNP 110340 to 110940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,650 DEBUG Processing 369/523 atomic regions from SNP 110640 to 111240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,820 DEBUG Processing 370/523 atomic regions from SNP 110940 to 111540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,990 DEBUG Processing 371/523 atomic regions from SNP 111240 to 111840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,159 DEBUG Processing 372/523 atomic regions from SNP 111540 to 112140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,331 DEBUG Processing 373/523 atomic regions from SNP 111840 to 112440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,510 DEBUG Processing 374/523 atomic regions from SNP 112140 to 112740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,683 DEBUG Processing 375/523 atomic regions from SNP 112440 to 113040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,859 DEBUG Processing 376/523 atomic regions from SNP 112740 to 113340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,035 DEBUG Processing 377/523 atomic regions from SNP 113040 to 113640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,205 DEBUG Processing 378/523 atomic regions from SNP 113340 to 113940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,376 DEBUG Processing 379/523 atomic regions from SNP 113640 to 114240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,548 DEBUG Processing 380/523 atomic regions from SNP 113940 to 114540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,721 DEBUG Processing 381/523 atomic regions from SNP 114240 to 114840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,892 DEBUG Processing 382/523 atomic regions from SNP 114540 to 115140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,061 DEBUG Processing 383/523 atomic regions from SNP 114840 to 115440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,231 DEBUG Processing 384/523 atomic regions from SNP 115140 to 115740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,424 DEBUG Processing 385/523 atomic regions from SNP 115440 to 116040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,631 DEBUG Processing 386/523 atomic regions from SNP 115740 to 116340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,849 DEBUG Processing 387/523 atomic regions from SNP 116040 to 116640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,056 DEBUG Processing 388/523 atomic regions from SNP 116340 to 116940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,256 DEBUG Processing 389/523 atomic regions from SNP 116640 to 117240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,431 DEBUG Processing 390/523 atomic regions from SNP 116940 to 117540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,607 DEBUG Processing 391/523 atomic regions from SNP 117240 to 117840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,808 DEBUG Processing 392/523 atomic regions from SNP 117540 to 118140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,988 DEBUG Processing 393/523 atomic regions from SNP 117840 to 118440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,162 DEBUG Processing 394/523 atomic regions from SNP 118140 to 118740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,335 DEBUG Processing 395/523 atomic regions from SNP 118440 to 119040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,507 DEBUG Processing 396/523 atomic regions from SNP 118740 to 119340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,688 DEBUG Processing 397/523 atomic regions from SNP 119040 to 119640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,860 DEBUG Processing 398/523 atomic regions from SNP 119340 to 119940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,037 DEBUG Processing 399/523 atomic regions from SNP 119640 to 120240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,211 DEBUG Processing 400/523 atomic regions from SNP 119940 to 120540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,392 DEBUG Processing 401/523 atomic regions from SNP 120240 to 120840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,604 DEBUG Processing 402/523 atomic regions from SNP 120540 to 121140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,774 DEBUG Processing 403/523 atomic regions from SNP 120840 to 121440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,946 DEBUG Processing 404/523 atomic regions from SNP 121140 to 121740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,131 DEBUG Processing 405/523 atomic regions from SNP 121440 to 122040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,329 DEBUG Processing 406/523 atomic regions from SNP 121740 to 122340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,510 DEBUG Processing 407/523 atomic regions from SNP 122040 to 122640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,683 DEBUG Processing 408/523 atomic regions from SNP 122340 to 122940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,925 DEBUG Processing 409/523 atomic regions from SNP 122640 to 123240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,124 DEBUG Processing 410/523 atomic regions from SNP 122940 to 123540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,325 DEBUG Processing 411/523 atomic regions from SNP 123240 to 123840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,533 DEBUG Processing 412/523 atomic regions from SNP 123540 to 124140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,731 DEBUG Processing 413/523 atomic regions from SNP 123840 to 124440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,908 DEBUG Processing 414/523 atomic regions from SNP 124140 to 124740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,081 DEBUG Processing 415/523 atomic regions from SNP 124440 to 125040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,258 DEBUG Processing 416/523 atomic regions from SNP 124740 to 125340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,433 DEBUG Processing 417/523 atomic regions from SNP 125040 to 125640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,610 DEBUG Processing 418/523 atomic regions from SNP 125340 to 125940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,804 DEBUG Processing 419/523 atomic regions from SNP 125640 to 126240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,011 DEBUG Processing 420/523 atomic regions from SNP 125940 to 126540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,186 DEBUG Processing 421/523 atomic regions from SNP 126240 to 126840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,356 DEBUG Processing 422/523 atomic regions from SNP 126540 to 127140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,548 DEBUG Processing 423/523 atomic regions from SNP 126840 to 127440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,743 DEBUG Processing 424/523 atomic regions from SNP 127140 to 127740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,936 DEBUG Processing 425/523 atomic regions from SNP 127440 to 128040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,118 DEBUG Processing 426/523 atomic regions from SNP 127740 to 128340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,306 DEBUG Processing 427/523 atomic regions from SNP 128040 to 128640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,504 DEBUG Processing 428/523 atomic regions from SNP 128340 to 128940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,681 DEBUG Processing 429/523 atomic regions from SNP 128640 to 129240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,864 DEBUG Processing 430/523 atomic regions from SNP 128940 to 129540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,082 DEBUG Processing 431/523 atomic regions from SNP 129240 to 129840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,276 DEBUG Processing 432/523 atomic regions from SNP 129540 to 130140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,468 DEBUG Processing 433/523 atomic regions from SNP 129840 to 130440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,678 DEBUG Processing 434/523 atomic regions from SNP 130140 to 130740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,888 DEBUG Processing 435/523 atomic regions from SNP 130440 to 131040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,092 DEBUG Processing 436/523 atomic regions from SNP 130740 to 131340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,280 DEBUG Processing 437/523 atomic regions from SNP 131040 to 131640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,452 DEBUG Processing 438/523 atomic regions from SNP 131340 to 131940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,628 DEBUG Processing 439/523 atomic regions from SNP 131640 to 132240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,824 DEBUG Processing 440/523 atomic regions from SNP 131940 to 132540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,029 DEBUG Processing 441/523 atomic regions from SNP 132240 to 132840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,222 DEBUG Processing 442/523 atomic regions from SNP 132540 to 133140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,447 DEBUG Processing 443/523 atomic regions from SNP 132840 to 133440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,661 DEBUG Processing 444/523 atomic regions from SNP 133140 to 133740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,874 DEBUG Processing 445/523 atomic regions from SNP 133440 to 134040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,054 DEBUG Processing 446/523 atomic regions from SNP 133740 to 134340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,226 DEBUG Processing 447/523 atomic regions from SNP 134040 to 134640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,406 DEBUG Processing 448/523 atomic regions from SNP 134340 to 134940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,602 DEBUG Processing 449/523 atomic regions from SNP 134640 to 135240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,801 DEBUG Processing 450/523 atomic regions from SNP 134940 to 135540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,999 DEBUG Processing 451/523 atomic regions from SNP 135240 to 135840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,197 DEBUG Processing 452/523 atomic regions from SNP 135540 to 136140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,381 DEBUG Processing 453/523 atomic regions from SNP 135840 to 136440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,560 DEBUG Processing 454/523 atomic regions from SNP 136140 to 136740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,732 DEBUG Processing 455/523 atomic regions from SNP 136440 to 137040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,904 DEBUG Processing 456/523 atomic regions from SNP 136740 to 137340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,077 DEBUG Processing 457/523 atomic regions from SNP 137040 to 137640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,252 DEBUG Processing 458/523 atomic regions from SNP 137340 to 137940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,424 DEBUG Processing 459/523 atomic regions from SNP 137640 to 138240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,596 DEBUG Processing 460/523 atomic regions from SNP 137940 to 138540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,768 DEBUG Processing 461/523 atomic regions from SNP 138240 to 138840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,939 DEBUG Processing 462/523 atomic regions from SNP 138540 to 139140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:40,114 DEBUG Processing 463/523 atomic regions from SNP 138840 to 139440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:40,321 DEBUG Processing 464/523 atomic regions from SNP 139140 to 139740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:40,545 DEBUG Processing 465/523 atomic regions from SNP 139440 to 140040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:40,738 DEBUG Processing 466/523 atomic regions from SNP 139740 to 140340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:40,942 DEBUG Processing 467/523 atomic regions from SNP 140040 to 140640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,121 DEBUG Processing 468/523 atomic regions from SNP 140340 to 140940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,299 DEBUG Processing 469/523 atomic regions from SNP 140640 to 141240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,473 DEBUG Processing 470/523 atomic regions from SNP 140940 to 141540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,647 DEBUG Processing 471/523 atomic regions from SNP 141240 to 141840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,820 DEBUG Processing 472/523 atomic regions from SNP 141540 to 142140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,996 DEBUG Processing 473/523 atomic regions from SNP 141840 to 142440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:42,170 DEBUG Processing 474/523 atomic regions from SNP 142140 to 142740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:42,340 DEBUG Processing 475/523 atomic regions from SNP 142440 to 143040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:42,515 DEBUG Processing 476/523 atomic regions from SNP 142740 to 143340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:42,688 DEBUG Processing 477/523 atomic regions from SNP 143040 to 143640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:42,864 DEBUG Processing 478/523 atomic regions from SNP 143340 to 143940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,067 DEBUG Processing 479/523 atomic regions from SNP 143640 to 144240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,263 DEBUG Processing 480/523 atomic regions from SNP 143940 to 144540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,435 DEBUG Processing 481/523 atomic regions from SNP 144240 to 144840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,608 DEBUG Processing 482/523 atomic regions from SNP 144540 to 145140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,794 DEBUG Processing 483/523 atomic regions from SNP 144840 to 145440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,987 DEBUG Processing 484/523 atomic regions from SNP 145140 to 145740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,175 DEBUG Processing 485/523 atomic regions from SNP 145440 to 146040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,356 DEBUG Processing 486/523 atomic regions from SNP 145740 to 146340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,527 DEBUG Processing 487/523 atomic regions from SNP 146040 to 146640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,708 DEBUG Processing 488/523 atomic regions from SNP 146340 to 146940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,922 DEBUG Processing 489/523 atomic regions from SNP 146640 to 147240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:45,139 DEBUG Processing 490/523 atomic regions from SNP 146940 to 147540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:45,322 DEBUG Processing 491/523 atomic regions from SNP 147240 to 147840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:45,508 DEBUG Processing 492/523 atomic regions from SNP 147540 to 148140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:45,714 DEBUG Processing 493/523 atomic regions from SNP 147840 to 148440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:45,907 DEBUG Processing 494/523 atomic regions from SNP 148140 to 148740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:46,087 DEBUG Processing 495/523 atomic regions from SNP 148440 to 149040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:46,261 DEBUG Processing 496/523 atomic regions from SNP 148740 to 149340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:46,432 DEBUG Processing 497/523 atomic regions from SNP 149040 to 149640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:46,599 DEBUG Processing 498/523 atomic regions from SNP 149340 to 149940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:46,767 DEBUG Processing 499/523 atomic regions from SNP 149640 to 150240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:46,954 DEBUG Processing 500/523 atomic regions from SNP 149940 to 150540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,127 DEBUG Processing 501/523 atomic regions from SNP 150240 to 150840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,294 DEBUG Processing 502/523 atomic regions from SNP 150540 to 151140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,462 DEBUG Processing 503/523 atomic regions from SNP 150840 to 151440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,645 DEBUG Processing 504/523 atomic regions from SNP 151140 to 151740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,833 DEBUG Processing 505/523 atomic regions from SNP 151440 to 152040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,005 DEBUG Processing 506/523 atomic regions from SNP 151740 to 152340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,176 DEBUG Processing 507/523 atomic regions from SNP 152040 to 152640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,347 DEBUG Processing 508/523 atomic regions from SNP 152340 to 152940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,517 DEBUG Processing 509/523 atomic regions from SNP 152640 to 153240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,692 DEBUG Processing 510/523 atomic regions from SNP 152940 to 153540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,866 DEBUG Processing 511/523 atomic regions from SNP 153240 to 153840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,038 DEBUG Processing 512/523 atomic regions from SNP 153540 to 154140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,209 DEBUG Processing 513/523 atomic regions from SNP 153840 to 154440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,383 DEBUG Processing 514/523 atomic regions from SNP 154140 to 154740 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,553 DEBUG Processing 515/523 atomic regions from SNP 154440 to 155040 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,724 DEBUG Processing 516/523 atomic regions from SNP 154740 to 155340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,895 DEBUG Processing 517/523 atomic regions from SNP 155040 to 155640 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,066 DEBUG Processing 518/523 atomic regions from SNP 155340 to 155940 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,238 DEBUG Processing 519/523 atomic regions from SNP 155640 to 156240 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,408 DEBUG Processing 520/523 atomic regions from SNP 155940 to 156540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,606 DEBUG Processing 521/523 atomic regions from SNP 156240 to 156840 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,801 DEBUG Processing 522/523 atomic regions from SNP 156540 to 157140 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,995 DEBUG Processing 523/523 atomic regions from SNP 156840 to 157440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:51,110 DEBUG Unique SNPs positions in subchromosome 1: 157441 2025-01-31 10:00:55,004 DEBUG Subchromosome time: 115.8789690900594, subchromosome SNPs: 157441 2025-01-31 10:00:55,005 DEBUG Estimated BADs: [4.11, 2.06, 0.69, 2.06, 1.03, 4.11, 0.69, 2.06, 8.23, 2.06, 4.11, 0.69, 2.06, 0.51, 2.06, 0.51, 2.06, 8.23, 2.06, 8.23, 2.06, 0.69, 4.11, 2.06, 6.17, 2.06, 1.03] SNP counts: [7062, 15314, 6605, 4532, 3021, 4493, 8432, 5845, 4977, 1680, 3280, 2895, 12611, 1483, 2715, 2395, 15457, 2849, 9815, 993, 6585, 3984, 8312, 3626, 882, 9589, 8009] SNP IDs counts: [7062, 15314, 6605, 4532, 3021, 4493, 8432, 5845, 4977, 1680, 3280, 2895, 12611, 1483, 2715, 2395, 15457, 2849, 9815, 993, 6585, 3984, 8312, 3626, 882, 9589, 8009] Critical gap: 506884bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 7.10Mbp, 15.66Mbp, 19.54Mbp, 22.07Mbp, 23.80Mbp, 26.23Mbp, 30.96Mbp, 34.22Mbp, 36.80Mbp, 37.81Mbp, 39.51Mbp, 41.11Mbp, 48.14Mbp, 49.01Mbp, 50.54Mbp, 51.94Mbp, 60.47Mbp, 61.94Mbp, 67.20Mbp, 67.72Mbp, 71.35Mbp, 73.57Mbp, 78.08Mbp, 80.08Mbp, 80.55Mbp, 85.78Mbp, 90.70Mbp] 2025-01-31 10:00:55,005 DEBUG chr18 time: 115.87952159717679 s 2025-01-31 10:00:55,094 DEBUG chr18: Fitting background model for 27 segments 2025-01-31 10:01:26,366 DEBUG Results of fit_background_model emitted. 2025-01-31 10:01:26,472 INFO Signal to noise fit: SPOT=0.33±0.17 2025-01-31 10:01:26,476 INFO Found 1 outlier SPOT score segments at iteration 1. Refitting with approximated signal/noise constraint. 2025-01-31 10:01:26,517 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:01:26,518 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 10:01:31,877 DEBUG chr13: Fitting background model for 1 segments 2025-01-31 10:01:34,233 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 10:01:34,298 INFO Signal to noise fit: SPOT=0.33±0.17 2025-01-31 10:01:34,301 INFO Final SPOT score: 0.33±0.17. Refitted 1 segments. 2025-01-31 10:01:34,342 INFO Estimating per-bp parameters of background model 2025-01-31 10:01:34,347 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:01:34,347 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 10:01:40,251 DEBUG chr5:3002500-5884501: Successfully fit background model for 2,528,540 bp. Use segment r for 0 bp 2025-01-31 10:01:40,616 DEBUG chr4:3050000-6835751: Successfully fit background model for 3,149,396 bp. Use segment r for 0 bp 2025-01-31 10:01:40,688 DEBUG chr3:3000000-8509751: Successfully fit background model for 4,750,031 bp. Use segment r for 0 bp 2025-01-31 10:01:40,777 DEBUG chr4:6835751-8520251: Successfully fit background model for 1,455,655 bp. Use segment r for 0 bp 2025-01-31 10:01:40,848 DEBUG chr3:8509751-10182751: Successfully fit background model for 1,535,519 bp. Use segment r for 0 bp 2025-01-31 10:01:41,523 DEBUG chr2:3051000-7357001: Successfully fit background model for 4,069,630 bp. Use segment r for 0 bp 2025-01-31 10:01:41,533 DEBUG chr4:8520251-16189251: Successfully fit background model for 6,925,484 bp. Use segment r for 0 bp 2025-01-31 10:01:41,615 DEBUG chrX:3055000-7550751: Successfully fit background model for 2,004,508 bp. Use segment r for 0 bp 2025-01-31 10:01:41,676 DEBUG chrX:7550751-8068251: Successfully fit background model for 504,572 bp. Use segment r for 0 bp 2025-01-31 10:01:41,689 DEBUG chr2:7357001-9124751: Successfully fit background model for 1,554,937 bp. Use segment r for 0 bp 2025-01-31 10:01:41,714 DEBUG chr3:10182751-19109251: Successfully fit background model for 7,514,788 bp. Use segment r for 0 bp 2025-01-31 10:01:41,780 DEBUG chr3:19109251-19695751: Successfully fit background model for 547,242 bp. Use segment r for 0 bp 2025-01-31 10:01:41,853 DEBUG chr5:5884501-20679251: Successfully fit background model for 11,770,500 bp. Use segment r for 0 bp 2025-01-31 10:01:42,018 DEBUG chr4:16189251-21710751: Successfully fit background model for 4,744,574 bp. Use segment r for 0 bp 2025-01-31 10:01:42,044 DEBUG chr4:21710751-21837751: Successfully fit background model for 122,704 bp. Use segment r for 0 bp 2025-01-31 10:01:42,115 DEBUG chr5:20679251-23400251: Successfully fit background model for 2,486,467 bp. Use segment r for 0 bp 2025-01-31 10:01:42,269 DEBUG chrX:8068251-14043751: Successfully fit background model for 5,250,635 bp. Use segment r for 0 bp 2025-01-31 10:01:42,299 DEBUG chr2:9124751-15365751: Successfully fit background model for 5,711,166 bp. Use segment r for 0 bp 2025-01-31 10:01:42,318 DEBUG chr5:23400251-25547501: Successfully fit background model for 2,046,032 bp. Use segment r for 0 bp 2025-01-31 10:01:42,370 DEBUG chr1:3000500-9541251: Successfully fit background model for 5,697,560 bp. Use segment r for 0 bp 2025-01-31 10:01:42,427 DEBUG chr1:9541251-10004751: Successfully fit background model for 446,683 bp. Use segment r for 0 bp 2025-01-31 10:01:42,473 DEBUG chrX:14043751-16208751: Successfully fit background model for 1,862,039 bp. Use segment r for 0 bp 2025-01-31 10:01:42,540 DEBUG chr3:19695751-27060251: Successfully fit background model for 6,425,086 bp. Use segment r for 0 bp 2025-01-31 10:01:42,541 DEBUG chr2:15365751-18025751: Successfully fit background model for 2,367,230 bp. Use segment r for 0 bp 2025-01-31 10:01:42,709 DEBUG chr2:18025751-19813751: Successfully fit background model for 1,664,176 bp. Use segment r for 0 bp 2025-01-31 10:01:42,742 DEBUG chr5:25547501-30192251: Successfully fit background model for 4,153,635 bp. Use segment r for 0 bp 2025-01-31 10:01:42,847 DEBUG chr5:30192251-31242251: Successfully fit background model for 967,715 bp. Use segment r for 0 bp 2025-01-31 10:01:43,013 DEBUG chrX:16208751-21402751: Successfully fit background model for 4,469,185 bp. Use segment r for 0 bp 2025-01-31 10:01:43,058 DEBUG chr1:10004751-16616751: Successfully fit background model for 5,957,035 bp. Use segment r for 0 bp 2025-01-31 10:01:43,224 DEBUG chr2:19813751-24916751: Successfully fit background model for 4,477,024 bp. Use segment r for 0 bp 2025-01-31 10:01:43,234 DEBUG chr4:21837751-32612251: Successfully fit background model for 9,696,418 bp. Use segment r for 0 bp 2025-01-31 10:01:43,317 DEBUG chr4:32612251-33295751: Successfully fit background model for 660,716 bp. Use segment r for 0 bp 2025-01-31 10:01:43,479 DEBUG chr4:33295751-35064251: Successfully fit background model for 1,647,513 bp. Use segment r for 0 bp 2025-01-31 10:01:43,504 DEBUG chr3:27060251-35998751: Successfully fit background model for 8,249,034 bp. Use segment r for 0 bp 2025-01-31 10:01:43,522 DEBUG chr5:31242251-38863751: Successfully fit background model for 7,261,743 bp. Use segment r for 0 bp 2025-01-31 10:01:43,731 DEBUG chr5:38863751-41103251: Successfully fit background model for 2,033,278 bp. Use segment r for 0 bp 2025-01-31 10:01:43,760 DEBUG chrX:21402751-26917001: Successfully fit background model for 2,890,088 bp. Use segment r for 1,225 bp 2025-01-31 10:01:43,947 DEBUG chr4:35064251-40134751: Successfully fit background model for 4,494,696 bp. Use segment r for 0 bp 2025-01-31 10:01:44,112 DEBUG chr4:40134751-41857501: Successfully fit background model for 1,562,355 bp. Use segment r for 0 bp 2025-01-31 10:01:44,120 DEBUG chr3:35998751-42366751: Successfully fit background model for 5,791,994 bp. Use segment r for 0 bp 2025-01-31 10:01:44,197 DEBUG chr5:41103251-45926251: Successfully fit background model for 4,331,091 bp. Use segment r for 0 bp 2025-01-31 10:01:44,470 DEBUG chr2:24916751-36263751: Successfully fit background model for 11,026,160 bp. Use segment r for 0 bp 2025-01-31 10:01:44,562 DEBUG chr2:36263751-37081251: Successfully fit background model for 677,992 bp. Use segment r for 0 bp 2025-01-31 10:01:44,595 DEBUG chr4:42724000-47644751: Successfully fit background model for 4,674,430 bp. Use segment r for 0 bp 2025-01-31 10:01:44,599 DEBUG chr1:16616751-30791751: Successfully fit background model for 12,657,143 bp. Use segment r for 0 bp 2025-01-31 10:01:44,637 DEBUG chr1:30791751-30963251: Successfully fit background model for 154,822 bp. Use segment r for 0 bp 2025-01-31 10:01:44,664 DEBUG chr5:45926251-51213251: Successfully fit background model for 4,832,929 bp. Use segment r for 0 bp 2025-01-31 10:01:44,705 DEBUG chr3:42366751-49034751: Successfully fit background model for 5,922,826 bp. Use segment r for 0 bp 2025-01-31 10:01:44,775 DEBUG chr2:37081251-39400751: Successfully fit background model for 2,171,164 bp. Use segment r for 0 bp 2025-01-31 10:01:44,783 DEBUG chr4:47644751-49692251: Successfully fit background model for 1,885,480 bp. Use segment r for 0 bp 2025-01-31 10:01:44,893 DEBUG chr1:30963251-33446751: Successfully fit background model for 2,171,111 bp. Use segment r for 0 bp 2025-01-31 10:01:44,901 DEBUG chr3:49034751-51221751: Successfully fit background model for 1,938,084 bp. Use segment r for 0 bp 2025-01-31 10:01:44,934 DEBUG chr5:51213251-54271751: Successfully fit background model for 2,945,083 bp. Use segment r for 0 bp 2025-01-31 10:01:44,953 DEBUG chr3:51221751-51704751: Successfully fit background model for 463,395 bp. Use segment r for 0 bp 2025-01-31 10:01:44,960 DEBUG chrX:31132500-39034501: Successfully fit background model for 2,932,402 bp. Use segment r for 367 bp 2025-01-31 10:01:45,013 DEBUG chr4:49692251-52164751: Successfully fit background model for 2,173,487 bp. Use segment r for 0 bp 2025-01-31 10:01:45,026 DEBUG chr1:33446751-34899251: Successfully fit background model for 1,382,434 bp. Use segment r for 0 bp 2025-01-31 10:01:45,129 DEBUG chr1:34899251-36001751: Successfully fit background model for 1,010,559 bp. Use segment r for 0 bp 2025-01-31 10:01:45,218 DEBUG chr1:36001751-36943501: Successfully fit background model for 918,006 bp. Use segment r for 0 bp 2025-01-31 10:01:45,224 DEBUG chr4:52164751-54535251: Successfully fit background model for 2,173,338 bp. Use segment r for 0 bp 2025-01-31 10:01:45,249 DEBUG chr2:39400751-44318751: Successfully fit background model for 4,489,446 bp. Use segment r for 0 bp 2025-01-31 10:01:45,362 DEBUG chr2:44318751-45452251: Successfully fit background model for 1,083,931 bp. Use segment r for 0 bp 2025-01-31 10:01:45,471 DEBUG chr1:36943501-39518251: Successfully fit background model for 2,486,772 bp. Use segment r for 0 bp 2025-01-31 10:01:45,627 DEBUG chr2:45452251-48063501: Successfully fit background model for 2,369,268 bp. Use segment r for 0 bp 2025-01-31 10:01:45,813 DEBUG chr5:54271751-63344251: Successfully fit background model for 8,034,974 bp. Use segment r for 0 bp 2025-01-31 10:01:45,817 DEBUG chrX:39034501-47959751: Successfully fit background model for 7,701,446 bp. Use segment r for 0 bp 2025-01-31 10:01:45,983 DEBUG chr1:39518251-44552751: Successfully fit background model for 4,730,710 bp. Use segment r for 0 bp 2025-01-31 10:01:46,064 DEBUG chrX:47959751-50549751: Successfully fit background model for 2,238,118 bp. Use segment r for 0 bp 2025-01-31 10:01:46,084 DEBUG chrX:50549751-50636251: Successfully fit background model for 78,897 bp. Use segment r for 0 bp 2025-01-31 10:01:46,163 DEBUG chr2:48063501-53284251: Successfully fit background model for 4,942,389 bp. Use segment r for 0 bp 2025-01-31 10:01:46,219 DEBUG chr1:44552751-47109001: Successfully fit background model for 2,157,179 bp. Use segment r for 0 bp 2025-01-31 10:01:46,265 DEBUG chr5:63344251-68369001: Successfully fit background model for 4,754,277 bp. Use segment r for 0 bp 2025-01-31 10:01:46,511 DEBUG chr2:53284251-57111251: Successfully fit background model for 3,277,978 bp. Use segment r for 0 bp 2025-01-31 10:01:46,555 DEBUG chr2:57111251-57475251: Successfully fit background model for 337,901 bp. Use segment r for 0 bp 2025-01-31 10:01:46,573 DEBUG chr5:68369001-71775251: Successfully fit background model for 2,996,391 bp. Use segment r for 0 bp 2025-01-31 10:01:46,712 DEBUG chr1:47109001-52097751: Successfully fit background model for 4,456,224 bp. Use segment r for 0 bp 2025-01-31 10:01:46,735 DEBUG chr1:52097751-52216751: Successfully fit background model for 117,384 bp. Use segment r for 0 bp 2025-01-31 10:01:46,842 DEBUG chr4:54535251-64088251: Successfully fit background model for 7,408,066 bp. Use segment r for 82 bp 2025-01-31 10:01:47,037 DEBUG chr3:51704751-70980251: Successfully fit background model for 17,455,230 bp. Use segment r for 0 bp 2025-01-31 10:01:47,069 DEBUG chr2:57475251-62685751: Successfully fit background model for 4,867,441 bp. Use segment r for 0 bp 2025-01-31 10:01:47,144 DEBUG chr5:71775251-77804251: Successfully fit background model for 5,705,235 bp. Use segment r for 0 bp 2025-01-31 10:01:47,326 DEBUG chr1:52216751-58391251: Successfully fit background model for 5,685,358 bp. Use segment r for 0 bp 2025-01-31 10:01:47,469 DEBUG chr1:58391251-59882751: Successfully fit background model for 1,403,664 bp. Use segment r for 0 bp 2025-01-31 10:01:47,599 DEBUG chr2:62685751-68488251: Successfully fit background model for 5,380,682 bp. Use segment r for 0 bp 2025-01-31 10:01:47,740 DEBUG chr1:59882751-62695751: Successfully fit background model for 2,630,866 bp. Use segment r for 0 bp 2025-01-31 10:01:47,895 DEBUG chr3:70980251-79509251: Successfully fit background model for 7,599,981 bp. Use segment r for 0 bp 2025-01-31 10:01:47,966 DEBUG chr1:62695751-65187751: Successfully fit background model for 2,342,868 bp. Use segment r for 0 bp 2025-01-31 10:01:48,249 DEBUG chr5:77804251-88549501: Successfully fit background model for 9,556,674 bp. Use segment r for 0 bp 2025-01-31 10:01:48,290 DEBUG chr3:79509251-84007251: Successfully fit background model for 4,142,318 bp. Use segment r for 0 bp 2025-01-31 10:01:48,570 DEBUG chrX:50636251-72905251: Successfully fit background model for 18,186,332 bp. Use segment r for 0 bp 2025-01-31 10:01:48,614 DEBUG chr3:84007251-87712751: Successfully fit background model for 3,527,996 bp. Use segment r for 0 bp 2025-01-31 10:01:48,659 DEBUG chr1:65187751-72211751: Successfully fit background model for 6,477,338 bp. Use segment r for 0 bp 2025-01-31 10:01:48,782 DEBUG chr4:64088251-81877251: Successfully fit background model for 15,741,930 bp. Use segment r for 0 bp 2025-01-31 10:01:48,799 DEBUG chrX:72905251-75082251: Successfully fit background model for 1,669,374 bp. Use segment r for 0 bp 2025-01-31 10:01:48,844 DEBUG chr1:72211751-74190251: Successfully fit background model for 1,874,965 bp. Use segment r for 0 bp 2025-01-31 10:01:48,852 DEBUG chr3:87712751-90375251: Successfully fit background model for 2,527,702 bp. Use segment r for 0 bp 2025-01-31 10:01:48,932 DEBUG chr2:68488251-80843501: Successfully fit background model for 11,788,819 bp. Use segment r for 0 bp 2025-01-31 10:01:48,966 DEBUG chr1:74190251-75357251: Successfully fit background model for 1,070,061 bp. Use segment r for 0 bp 2025-01-31 10:01:49,009 DEBUG chrX:75082251-77431751: Successfully fit background model for 1,908,395 bp. Use segment r for 0 bp 2025-01-31 10:01:49,147 DEBUG chr4:81877251-85871751: Successfully fit background model for 3,732,667 bp. Use segment r for 0 bp 2025-01-31 10:01:49,149 DEBUG chr2:80843501-83182751: Successfully fit background model for 2,042,564 bp. Use segment r for 0 bp 2025-01-31 10:01:49,221 DEBUG chr3:90375251-94359751: Successfully fit background model for 3,073,546 bp. Use segment r for 0 bp 2025-01-31 10:01:49,288 DEBUG chr2:83182751-84649751: Successfully fit background model for 1,194,095 bp. Use segment r for 0 bp 2025-01-31 10:01:49,358 DEBUG chr2:84649751-85354751: Successfully fit background model for 665,361 bp. Use segment r for 0 bp 2025-01-31 10:01:49,441 DEBUG chr3:94359751-96714751: Successfully fit background model for 2,154,015 bp. Use segment r for 0 bp 2025-01-31 10:01:49,481 DEBUG chr4:85871751-89629751: Successfully fit background model for 3,374,164 bp. Use segment r for 0 bp 2025-01-31 10:01:49,762 DEBUG chr3:96714751-100356751: Successfully fit background model for 3,218,304 bp. Use segment r for 0 bp 2025-01-31 10:01:49,776 DEBUG chr4:89629751-92898751: Successfully fit background model for 2,865,254 bp. Use segment r for 0 bp 2025-01-31 10:01:49,795 DEBUG chr2:85354751-89913251: Successfully fit background model for 3,956,713 bp. Use segment r for 0 bp 2025-01-31 10:01:49,992 DEBUG chr1:75357251-84838251: Successfully fit background model for 8,748,388 bp. Use segment r for 0 bp 2025-01-31 10:01:50,147 DEBUG chr1:84838251-86339251: Successfully fit background model for 960,553 bp. Use segment r for 0 bp 2025-01-31 10:01:50,174 DEBUG chr1:86339251-86536751: Successfully fit background model for 192,543 bp. Use segment r for 0 bp 2025-01-31 10:01:50,267 DEBUG chr2:89913251-94881751: Successfully fit background model for 4,584,642 bp. Use segment r for 0 bp 2025-01-31 10:01:50,282 DEBUG chr3:100356751-105822251: Successfully fit background model for 5,226,600 bp. Use segment r for 0 bp 2025-01-31 10:01:50,409 DEBUG chr3:105822251-107203251: Successfully fit background model for 1,222,002 bp. Use segment r for 0 bp 2025-01-31 10:01:50,522 DEBUG chr4:92898751-100992751: Successfully fit background model for 7,440,722 bp. Use segment r for 0 bp 2025-01-31 10:01:50,577 DEBUG chr3:107203251-108917251: Successfully fit background model for 1,669,721 bp. Use segment r for 0 bp 2025-01-31 10:01:50,590 DEBUG chrX:77431751-91992251: Successfully fit background model for 12,390,127 bp. Use segment r for 0 bp 2025-01-31 10:01:50,603 DEBUG chr1:86536751-91176751: Successfully fit background model for 4,429,287 bp. Use segment r for 0 bp 2025-01-31 10:01:50,627 DEBUG chr5:88549501-103653251: Successfully fit background model for 12,038,757 bp. Use segment r for 4,532 bp 2025-01-31 10:01:50,768 DEBUG chrX:91992251-93784251: Successfully fit background model for 1,540,169 bp. Use segment r for 0 bp 2025-01-31 10:01:50,845 DEBUG chr1:91176751-93870751: Successfully fit background model for 2,591,914 bp. Use segment r for 0 bp 2025-01-31 10:01:50,869 DEBUG chrX:93784251-94797751: Successfully fit background model for 898,816 bp. Use segment r for 0 bp 2025-01-31 10:01:50,872 DEBUG chr2:94881751-101156251: Successfully fit background model for 5,222,752 bp. Use segment r for 0 bp 2025-01-31 10:01:50,998 DEBUG chr4:100992751-106439751: Successfully fit background model for 5,116,229 bp. Use segment r for 0 bp 2025-01-31 10:01:51,089 DEBUG chr5:103653251-108798251: Successfully fit background model for 4,728,777 bp. Use segment r for 0 bp 2025-01-31 10:01:51,214 DEBUG chr3:108917251-115627751: Successfully fit background model for 5,749,637 bp. Use segment r for 0 bp 2025-01-31 10:01:51,221 DEBUG chr5:108798251-110092751: Successfully fit background model for 1,034,320 bp. Use segment r for 0 bp 2025-01-31 10:01:51,282 DEBUG chrX:94797751-98936751: Successfully fit background model for 3,419,831 bp. Use segment r for 0 bp 2025-01-31 10:01:51,317 DEBUG chr3:115627751-116710251: Successfully fit background model for 1,041,636 bp. Use segment r for 0 bp 2025-01-31 10:01:51,340 DEBUG chr4:106439751-110278251: Successfully fit background model for 3,656,636 bp. Use segment r for 0 bp 2025-01-31 10:01:51,497 DEBUG chr4:110278251-111908251: Successfully fit background model for 1,441,473 bp. Use segment r for 0 bp 2025-01-31 10:01:51,520 DEBUG chr2:101156251-107831251: Successfully fit background model for 6,337,197 bp. Use segment r for 0 bp 2025-01-31 10:01:51,533 DEBUG chr5:110092751-113722251: Successfully fit background model for 3,533,671 bp. Use segment r for 0 bp 2025-01-31 10:01:51,693 DEBUG chr4:111908251-114050751: Successfully fit background model for 1,869,878 bp. Use segment r for 0 bp 2025-01-31 10:01:51,727 DEBUG chr5:113722251-115820751: Successfully fit background model for 2,041,436 bp. Use segment r for 0 bp 2025-01-31 10:01:51,728 DEBUG chr3:116710251-121153001: Successfully fit background model for 4,100,984 bp. Use segment r for 0 bp 2025-01-31 10:01:51,854 DEBUG chr4:114050751-115820251: Successfully fit background model for 1,518,762 bp. Use segment r for 0 bp 2025-01-31 10:01:51,871 DEBUG chrX:98936751-105060751: Successfully fit background model for 5,532,238 bp. Use segment r for 0 bp 2025-01-31 10:01:51,910 DEBUG chr2:107831251-112238751: Successfully fit background model for 3,870,667 bp. Use segment r for 0 bp 2025-01-31 10:01:51,914 DEBUG chr3:121153001-123271751: Successfully fit background model for 2,059,752 bp. Use segment r for 0 bp 2025-01-31 10:01:51,929 DEBUG chr1:93870751-104367501: Successfully fit background model for 9,108,437 bp. Use segment r for 0 bp 2025-01-31 10:01:51,949 DEBUG chr5:115820751-118358251: Successfully fit background model for 2,476,474 bp. Use segment r for 0 bp 2025-01-31 10:01:51,981 DEBUG chr2:112238751-112910251: Successfully fit background model for 622,218 bp. Use segment r for 0 bp 2025-01-31 10:01:52,106 DEBUG chr5:118358251-120079001: Successfully fit background model for 1,694,280 bp. Use segment r for 0 bp 2025-01-31 10:01:52,177 DEBUG chr1:104367501-107031751: Successfully fit background model for 2,470,133 bp. Use segment r for 0 bp 2025-01-31 10:01:52,181 DEBUG chr4:115820251-119393251: Successfully fit background model for 3,415,958 bp. Use segment r for 0 bp 2025-01-31 10:01:52,248 DEBUG chr3:123271751-127182251: Successfully fit background model for 3,595,036 bp. Use segment r for 0 bp 2025-01-31 10:01:52,391 DEBUG chrX:105060751-110807251: Successfully fit background model for 4,940,397 bp. Use segment r for 0 bp 2025-01-31 10:01:52,498 DEBUG chr2:112910251-118654251: Successfully fit background model for 5,401,561 bp. Use segment r for 0 bp 2025-01-31 10:01:52,581 DEBUG chr3:127182251-130732751: Successfully fit background model for 3,362,658 bp. Use segment r for 0 bp 2025-01-31 10:01:52,612 DEBUG chr5:120079001-125331251: Successfully fit background model for 5,031,111 bp. Use segment r for 0 bp 2025-01-31 10:01:52,900 DEBUG chr2:118654251-123021751: Successfully fit background model for 4,144,916 bp. Use segment r for 0 bp 2025-01-31 10:01:52,923 DEBUG chr4:119393251-127012251: Successfully fit background model for 6,565,504 bp. Use segment r for 0 bp 2025-01-31 10:01:52,993 DEBUG chr5:125331251-129710001: Successfully fit background model for 4,187,802 bp. Use segment r for 0 bp 2025-01-31 10:01:52,998 DEBUG chr3:130732751-135268251: Successfully fit background model for 4,068,439 bp. Use segment r for 0 bp 2025-01-31 10:01:53,012 DEBUG chr2:123021751-124059251: Successfully fit background model for 940,693 bp. Use segment r for 0 bp 2025-01-31 10:01:53,035 DEBUG chr5:129710001-130060751: Successfully fit background model for 291,318 bp. Use segment r for 0 bp 2025-01-31 10:01:53,056 DEBUG chr3:135268251-135816251: Successfully fit background model for 523,437 bp. Use segment r for 0 bp 2025-01-31 10:01:53,078 DEBUG chr4:127012251-128630251: Successfully fit background model for 1,575,236 bp. Use segment r for 0 bp 2025-01-31 10:01:53,310 DEBUG chr2:124059251-127205751: Successfully fit background model for 2,962,725 bp. Use segment r for 0 bp 2025-01-31 10:01:53,345 DEBUG chr3:135816251-139251001: Successfully fit background model for 3,227,970 bp. Use segment r for 0 bp 2025-01-31 10:01:53,414 DEBUG chr1:107031751-118310251: Successfully fit background model for 9,820,836 bp. Use segment r for 0 bp 2025-01-31 10:01:53,427 DEBUG chr5:130060751-134136751: Successfully fit background model for 3,910,519 bp. Use segment r for 0 bp 2025-01-31 10:01:53,576 DEBUG chr3:139251001-141860251: Successfully fit background model for 2,366,109 bp. Use segment r for 0 bp 2025-01-31 10:01:53,587 DEBUG chr1:118310251-120049751: Successfully fit background model for 1,690,649 bp. Use segment r for 0 bp 2025-01-31 10:01:53,796 DEBUG chr5:134136751-138280251: Successfully fit background model for 3,887,101 bp. Use segment r for 0 bp 2025-01-31 10:01:53,851 DEBUG chr1:120049751-122865751: Successfully fit background model for 2,620,620 bp. Use segment r for 0 bp 2025-01-31 10:01:53,872 DEBUG chrX:110807251-124247501: Successfully fit background model for 10,567,677 bp. Use segment r for 0 bp 2025-01-31 10:01:53,882 DEBUG chr5:138280251-139137751: Successfully fit background model for 783,958 bp. Use segment r for 0 bp 2025-01-31 10:01:53,930 DEBUG chr2:127205751-133732251: Successfully fit background model for 6,250,475 bp. Use segment r for 0 bp 2025-01-31 10:01:53,972 DEBUG chr1:122865751-124185251: Successfully fit background model for 1,221,473 bp. Use segment r for 0 bp 2025-01-31 10:01:54,110 DEBUG chr3:141860251-147297751: Successfully fit background model for 5,164,036 bp. Use segment r for 0 bp 2025-01-31 10:01:54,469 DEBUG chr5:139137751-145233751: Successfully fit background model for 5,833,517 bp. Use segment r for 0 bp 2025-01-31 10:01:54,489 DEBUG chr4:128630251-141646251: Successfully fit background model for 12,548,468 bp. Use segment r for 0 bp 2025-01-31 10:01:54,534 DEBUG chr3:147297751-151701751: Successfully fit background model for 4,153,822 bp. Use segment r for 0 bp 2025-01-31 10:01:54,603 DEBUG chr1:124185251-130690751: Successfully fit background model for 6,047,100 bp. Use segment r for 0 bp 2025-01-31 10:01:54,606 DEBUG chr5:145233751-146660751: Successfully fit background model for 1,121,318 bp. Use segment r for 0 bp 2025-01-31 10:01:54,646 DEBUG chrX:126011000-133909751: Successfully fit background model for 6,793,348 bp. Use segment r for 0 bp 2025-01-31 10:01:54,714 DEBUG chr2:133732251-141546001: Successfully fit background model for 7,249,866 bp. Use segment r for 0 bp 2025-01-31 10:01:54,817 DEBUG chr3:151701751-154971751: Successfully fit background model for 3,111,439 bp. Use segment r for 0 bp 2025-01-31 10:01:55,013 DEBUG chr3:154971751-157218751: Successfully fit background model for 2,075,239 bp. Use segment r for 0 bp 2025-01-31 10:01:55,063 DEBUG chr4:141646251-147898751: Successfully fit background model for 4,019,125 bp. Use segment r for 0 bp 2025-01-31 10:01:55,084 DEBUG chr5:146660751-151834684: Successfully fit background model for 4,844,528 bp. Use segment r for 0 bp 2025-01-31 10:01:55,106 DEBUG chr3:157218751-158229501: Successfully fit background model for 931,589 bp. Use segment r for 0 bp 2025-01-31 10:01:55,121 DEBUG chr1:130690751-136305751: Successfully fit background model for 5,463,770 bp. Use segment r for 0 bp 2025-01-31 10:01:55,265 DEBUG chr3:158229501-160039680: Successfully fit background model for 1,445,465 bp. Use segment r for 0 bp 2025-01-31 10:01:55,374 DEBUG chr2:141546001-148907251: Successfully fit background model for 6,927,609 bp. Use segment r for 0 bp 2025-01-31 10:01:55,406 DEBUG chr1:136305751-139516251: Successfully fit background model for 3,014,259 bp. Use segment r for 0 bp 2025-01-31 10:01:55,446 DEBUG chr4:147898751-152243751: Successfully fit background model for 4,262,215 bp. Use segment r for 0 bp 2025-01-31 10:01:55,552 DEBUG chr2:148907251-150743751: Successfully fit background model for 1,574,167 bp. Use segment r for 0 bp 2025-01-31 10:01:55,620 DEBUG chr4:152243751-153938751: Successfully fit background model for 1,658,949 bp. Use segment r for 0 bp 2025-01-31 10:01:55,750 DEBUG chr1:139516251-142848251: Successfully fit background model for 2,860,093 bp. Use segment r for 0 bp 2025-01-31 10:01:55,910 DEBUG chr1:142848251-144342751: Successfully fit background model for 1,265,383 bp. Use segment r for 0 bp 2025-01-31 10:01:55,912 DEBUG chr4:153938751-156508116: Successfully fit background model for 2,271,846 bp. Use segment r for 0 bp 2025-01-31 10:01:56,317 DEBUG chr2:150743751-158500251: Successfully fit background model for 7,183,763 bp. Use segment r for 0 bp 2025-01-31 10:01:56,396 DEBUG chr1:144342751-149479251: Successfully fit background model for 4,505,449 bp. Use segment r for 0 bp 2025-01-31 10:01:56,511 DEBUG chrX:133909751-150429251: Successfully fit background model for 12,492,244 bp. Use segment r for 0 bp 2025-01-31 10:01:56,547 DEBUG chr1:149479251-151032251: Successfully fit background model for 1,423,093 bp. Use segment r for 0 bp 2025-01-31 10:01:56,633 DEBUG chr2:158500251-161873251: Successfully fit background model for 3,224,628 bp. Use segment r for 0 bp 2025-01-31 10:01:56,707 DEBUG chrX:150429251-152130251: Successfully fit background model for 1,512,072 bp. Use segment r for 0 bp 2025-01-31 10:01:56,755 DEBUG chr2:161873251-162918251: Successfully fit background model for 991,793 bp. Use segment r for 0 bp 2025-01-31 10:01:57,132 DEBUG chr1:151032251-156967751: Successfully fit background model for 5,620,261 bp. Use segment r for 0 bp 2025-01-31 10:01:57,254 DEBUG chr2:162918251-168103251: Successfully fit background model for 5,004,111 bp. Use segment r for 0 bp 2025-01-31 10:01:57,382 DEBUG chrX:152130251-159368251: Successfully fit background model for 6,202,053 bp. Use segment r for 0 bp 2025-01-31 10:01:57,409 DEBUG chr1:156967751-160038751: Successfully fit background model for 2,928,310 bp. Use segment r for 0 bp 2025-01-31 10:01:57,651 DEBUG chr2:168103251-172216751: Successfully fit background model for 3,997,044 bp. Use segment r for 0 bp 2025-01-31 10:01:57,877 DEBUG chrX:159368251-164296751: Successfully fit background model for 4,539,615 bp. Use segment r for 0 bp 2025-01-31 10:01:57,977 DEBUG chr2:172216751-175179501: Successfully fit background model for 2,736,904 bp. Use segment r for 0 bp 2025-01-31 10:01:58,293 DEBUG chr2:176700000-179817251: Successfully fit background model for 1,926,432 bp. Use segment r for 0 bp 2025-01-31 10:01:58,529 DEBUG chrX:164296751-169967751: Successfully fit background model for 5,160,298 bp. Use segment r for 0 bp 2025-01-31 10:01:58,540 DEBUG chr2:179817251-182113224: Successfully fit background model for 2,106,474 bp. Use segment r for 0 bp 2025-01-31 10:01:58,638 DEBUG chrX:169967751-171031299: Successfully fit background model for 14,943 bp. Use segment r for 0 bp 2025-01-31 10:01:58,891 DEBUG chr1:160038751-168268251: Successfully fit background model for 7,674,355 bp. Use segment r for 0 bp 2025-01-31 10:01:59,178 DEBUG chr1:168268251-170834751: Successfully fit background model for 2,410,461 bp. Use segment r for 0 bp 2025-01-31 10:01:59,328 DEBUG chr1:170834751-172197751: Successfully fit background model for 1,262,707 bp. Use segment r for 0 bp 2025-01-31 10:02:00,132 DEBUG chr1:172197751-178303251: Successfully fit background model for 5,515,590 bp. Use segment r for 0 bp 2025-01-31 10:02:00,159 DEBUG chr1:178303251-178409751: Successfully fit background model for 104,020 bp. Use segment r for 0 bp 2025-01-31 10:02:00,268 DEBUG chr1:178409751-179475751: Successfully fit background model for 1,040,087 bp. Use segment r for 0 bp 2025-01-31 10:02:00,438 DEBUG chr1:179475751-181311751: Successfully fit background model for 1,755,625 bp. Use segment r for 0 bp 2025-01-31 10:02:00,844 DEBUG chr1:181311751-185429751: Successfully fit background model for 3,841,064 bp. Use segment r for 0 bp 2025-01-31 10:02:01,342 DEBUG chr1:185429751-190744751: Successfully fit background model for 5,117,858 bp. Use segment r for 0 bp 2025-01-31 10:02:01,464 DEBUG chr1:190744751-191954251: Successfully fit background model for 1,164,296 bp. Use segment r for 0 bp 2025-01-31 10:02:01,767 DEBUG chr1:191954251-195471971: Successfully fit background model for 3,166,095 bp. Use segment r for 0 bp 2025-01-31 10:03:29,314 DEBUG chr6:3050000-9040751: Successfully fit background model for 5,321,344 bp. Use segment r for 0 bp 2025-01-31 10:03:29,494 DEBUG chr6:9040751-11051751: Successfully fit background model for 1,726,409 bp. Use segment r for 0 bp 2025-01-31 10:03:30,130 DEBUG chr6:11051751-17633751: Successfully fit background model for 5,806,399 bp. Use segment r for 0 bp 2025-01-31 10:03:30,252 DEBUG chr6:17633751-18963001: Successfully fit background model for 1,218,804 bp. Use segment r for 0 bp 2025-01-31 10:03:30,859 DEBUG chr7:3004000-3569751: Successfully fit background model for 416,638 bp. Use segment r for 3,594 bp 2025-01-31 10:03:31,018 DEBUG chr7:3569751-5121751: Successfully fit background model for 1,248,215 bp. Use segment r for 0 bp 2025-01-31 10:03:31,078 DEBUG chr7:5121751-5703251: Successfully fit background model for 424,806 bp. Use segment r for 0 bp 2025-01-31 10:03:31,154 DEBUG chr6:18963001-28213751: Successfully fit background model for 8,223,843 bp. Use segment r for 0 bp 2025-01-31 10:03:31,222 DEBUG chr7:5703251-7300751: Successfully fit background model for 1,339,463 bp. Use segment r for 0 bp 2025-01-31 10:03:31,858 DEBUG chr6:28213751-35991251: Successfully fit background model for 7,363,456 bp. Use segment r for 0 bp 2025-01-31 10:03:32,037 DEBUG chr7:7300751-12880751: Successfully fit background model for 2,127,015 bp. Use segment r for 24,809 bp 2025-01-31 10:03:32,052 DEBUG chr6:35991251-38143251: Successfully fit background model for 2,036,671 bp. Use segment r for 0 bp 2025-01-31 10:03:32,064 DEBUG chr7:12880751-13063751: Successfully fit background model for 175,231 bp. Use segment r for 0 bp 2025-01-31 10:03:32,163 DEBUG chr6:38143251-39388751: Successfully fit background model for 1,215,900 bp. Use segment r for 0 bp 2025-01-31 10:03:32,333 DEBUG chr7:13063751-15908751: Successfully fit background model for 1,759,350 bp. Use segment r for 0 bp 2025-01-31 10:03:32,450 DEBUG chr7:15908751-17084751: Successfully fit background model for 1,140,676 bp. Use segment r for 0 bp 2025-01-31 10:03:32,609 DEBUG chr6:39388751-44047751: Successfully fit background model for 4,169,189 bp. Use segment r for 0 bp 2025-01-31 10:03:32,691 DEBUG chr7:17084751-18871751: Successfully fit background model for 1,246,206 bp. Use segment r for 8,501 bp 2025-01-31 10:03:32,803 DEBUG chr7:18871751-20073001: Successfully fit background model for 1,147,994 bp. Use segment r for 0 bp 2025-01-31 10:03:32,820 DEBUG chr6:44047751-46456751: Successfully fit background model for 2,180,892 bp. Use segment r for 0 bp 2025-01-31 10:03:32,924 DEBUG chr6:46456751-47593751: Successfully fit background model for 1,019,488 bp. Use segment r for 0 bp 2025-01-31 10:03:32,979 DEBUG chr7:22785500-24079751: Successfully fit background model for 637,996 bp. Use segment r for 3,627 bp 2025-01-31 10:03:33,145 DEBUG chr7:24079751-25942751: Successfully fit background model for 1,746,486 bp. Use segment r for 0 bp 2025-01-31 10:03:33,260 DEBUG chr7:25942751-27159751: Successfully fit background model for 952,944 bp. Use segment r for 0 bp 2025-01-31 10:03:33,295 DEBUG chr6:47593751-51442251: Successfully fit background model for 3,505,906 bp. Use segment r for 0 bp 2025-01-31 10:03:33,645 DEBUG chr7:27159751-31152251: Successfully fit background model for 3,762,237 bp. Use segment r for 0 bp 2025-01-31 10:03:34,004 DEBUG chr7:31152251-33817251: Successfully fit background model for 1,066,343 bp. Use segment r for 8,266 bp 2025-01-31 10:03:34,088 DEBUG chr6:51442251-59373251: Successfully fit background model for 7,374,295 bp. Use segment r for 0 bp 2025-01-31 10:03:34,210 DEBUG chr7:33817251-35950251: Successfully fit background model for 2,023,392 bp. Use segment r for 0 bp 2025-01-31 10:03:34,399 DEBUG chr7:35950251-38073751: Successfully fit background model for 2,077,588 bp. Use segment r for 0 bp 2025-01-31 10:03:34,424 DEBUG chr7:38073751-38274751: Successfully fit background model for 197,467 bp. Use segment r for 0 bp 2025-01-31 10:03:34,514 DEBUG chr10:3101500-5796251: Successfully fit background model for 2,470,176 bp. Use segment r for 0 bp 2025-01-31 10:03:34,526 DEBUG chr10:5796251-5847751: Successfully fit background model for 50,497 bp. Use segment r for 0 bp 2025-01-31 10:03:34,708 DEBUG chr10:5847751-7660251: Successfully fit background model for 1,514,204 bp. Use segment r for 0 bp 2025-01-31 10:03:34,752 DEBUG chr6:59373251-66944751: Successfully fit background model for 6,714,532 bp. Use segment r for 0 bp 2025-01-31 10:03:34,841 DEBUG chr6:66944751-67794751: Successfully fit background model for 754,038 bp. Use segment r for 0 bp 2025-01-31 10:03:35,061 DEBUG chr7:38274751-43044251: Successfully fit background model for 3,308,313 bp. Use segment r for 276 bp 2025-01-31 10:03:35,103 DEBUG chr6:67794751-70751751: Successfully fit background model for 2,333,883 bp. Use segment r for 0 bp 2025-01-31 10:03:35,181 DEBUG chr7:43044251-44302751: Successfully fit background model for 1,140,527 bp. Use segment r for 0 bp 2025-01-31 10:03:35,319 DEBUG chr7:44302751-45699751: Successfully fit background model for 1,371,062 bp. Use segment r for 0 bp 2025-01-31 10:03:35,385 DEBUG chr10:7660251-14933251: Successfully fit background model for 6,727,027 bp. Use segment r for 0 bp 2025-01-31 10:03:35,415 DEBUG chr6:70751751-74192501: Successfully fit background model for 3,241,402 bp. Use segment r for 0 bp 2025-01-31 10:03:35,455 DEBUG chr7:45699751-47153751: Successfully fit background model for 1,424,566 bp. Use segment r for 0 bp 2025-01-31 10:03:35,567 DEBUG chr10:14933251-16911251: Successfully fit background model for 1,727,955 bp. Use segment r for 0 bp 2025-01-31 10:03:35,577 DEBUG chr7:47153751-48450751: Successfully fit background model for 1,033,612 bp. Use segment r for 0 bp 2025-01-31 10:03:35,722 DEBUG chr7:48450751-49986751: Successfully fit background model for 1,461,414 bp. Use segment r for 0 bp 2025-01-31 10:03:35,921 DEBUG chr7:49986751-52064251: Successfully fit background model for 1,816,945 bp. Use segment r for 0 bp 2025-01-31 10:03:35,956 DEBUG chr6:74192501-79782251: Successfully fit background model for 5,021,882 bp. Use segment r for 0 bp 2025-01-31 10:03:36,213 DEBUG chr6:79782251-82651751: Successfully fit background model for 2,601,033 bp. Use segment r for 0 bp 2025-01-31 10:03:36,236 DEBUG chr7:52064251-55475251: Successfully fit background model for 2,999,472 bp. Use segment r for 0 bp 2025-01-31 10:03:36,314 DEBUG chr6:82651751-83689251: Successfully fit background model for 1,014,429 bp. Use segment r for 0 bp 2025-01-31 10:03:36,323 DEBUG chr7:55475251-56351251: Successfully fit background model for 767,432 bp. Use segment r for 0 bp 2025-01-31 10:03:36,460 DEBUG chr6:83689251-85331251: Successfully fit background model for 1,571,628 bp. Use segment r for 0 bp 2025-01-31 10:03:36,822 DEBUG chr10:16911251-29522751: Successfully fit background model for 11,578,965 bp. Use segment r for 0 bp 2025-01-31 10:03:36,845 DEBUG chr6:85331251-89685501: Successfully fit background model for 4,121,378 bp. Use segment r for 0 bp 2025-01-31 10:03:36,909 DEBUG chr6:89685501-90309251: Successfully fit background model for 486,959 bp. Use segment r for 0 bp 2025-01-31 10:03:37,039 DEBUG chr7:56351251-63877751: Successfully fit background model for 6,253,952 bp. Use segment r for 0 bp 2025-01-31 10:03:37,055 DEBUG chr6:90309251-91971251: Successfully fit background model for 1,630,341 bp. Use segment r for 0 bp 2025-01-31 10:03:37,472 DEBUG chr7:63877751-68853251: Successfully fit background model for 4,726,432 bp. Use segment r for 0 bp 2025-01-31 10:03:37,692 DEBUG chr10:29522751-38489751: Successfully fit background model for 8,078,345 bp. Use segment r for 0 bp 2025-01-31 10:03:37,797 DEBUG chr7:68853251-72655501: Successfully fit background model for 3,579,343 bp. Use segment r for 0 bp 2025-01-31 10:03:37,843 DEBUG chr10:38489751-40108251: Successfully fit background model for 1,494,727 bp. Use segment r for 0 bp 2025-01-31 10:03:38,097 DEBUG chr7:72655501-76008251: Successfully fit background model for 3,093,290 bp. Use segment r for 0 bp 2025-01-31 10:03:38,138 DEBUG chr10:40108251-43517251: Successfully fit background model for 3,272,698 bp. Use segment r for 0 bp 2025-01-31 10:03:38,265 DEBUG chr7:76008251-77923251: Successfully fit background model for 1,731,279 bp. Use segment r for 0 bp 2025-01-31 10:03:38,283 DEBUG chr6:91971251-103371751: Successfully fit background model for 10,773,546 bp. Use segment r for 0 bp 2025-01-31 10:03:38,386 DEBUG chr7:77923251-79225251: Successfully fit background model for 1,251,571 bp. Use segment r for 0 bp 2025-01-31 10:03:38,431 DEBUG chr10:43517251-46799251: Successfully fit background model for 3,053,159 bp. Use segment r for 0 bp 2025-01-31 10:03:38,507 DEBUG chr6:103371751-105740751: Successfully fit background model for 2,134,610 bp. Use segment r for 0 bp 2025-01-31 10:03:38,547 DEBUG chr7:79225251-80980251: Successfully fit background model for 1,710,012 bp. Use segment r for 0 bp 2025-01-31 10:03:38,719 DEBUG chr10:46799251-50093251: Successfully fit background model for 2,880,262 bp. Use segment r for 0 bp 2025-01-31 10:03:38,909 DEBUG chr7:80980251-84893751: Successfully fit background model for 3,684,304 bp. Use segment r for 0 bp 2025-01-31 10:03:39,095 DEBUG chr10:50093251-54133751: Successfully fit background model for 3,586,979 bp. Use segment r for 0 bp 2025-01-31 10:03:39,195 DEBUG chr6:105740751-112819001: Successfully fit background model for 6,424,612 bp. Use segment r for 0 bp 2025-01-31 10:03:39,230 DEBUG chr7:84893751-88611751: Successfully fit background model for 3,309,766 bp. Use segment r for 0 bp 2025-01-31 10:03:39,274 DEBUG chr6:112819001-113597251: Successfully fit background model for 762,196 bp. Use segment r for 0 bp 2025-01-31 10:03:39,351 DEBUG chr10:54133751-57141251: Successfully fit background model for 2,678,687 bp. Use segment r for 0 bp 2025-01-31 10:03:39,410 DEBUG chr7:88611751-90477251: Successfully fit background model for 1,694,529 bp. Use segment r for 0 bp 2025-01-31 10:03:39,549 DEBUG chr10:57141251-59210751: Successfully fit background model for 1,580,340 bp. Use segment r for 0 bp 2025-01-31 10:03:39,559 DEBUG chr7:90477251-92144501: Successfully fit background model for 1,558,290 bp. Use segment r for 0 bp 2025-01-31 10:03:39,638 DEBUG chr7:92144501-92981251: Successfully fit background model for 767,366 bp. Use segment r for 0 bp 2025-01-31 10:03:39,917 DEBUG chr7:92981251-95815251: Successfully fit background model for 2,533,417 bp. Use segment r for 0 bp 2025-01-31 10:03:40,003 DEBUG chr10:59210751-63984751: Successfully fit background model for 4,588,972 bp. Use segment r for 0 bp 2025-01-31 10:03:40,119 DEBUG chr7:95815251-98050751: Successfully fit background model for 2,113,975 bp. Use segment r for 0 bp 2025-01-31 10:03:40,274 DEBUG chr10:63984751-66046251: Successfully fit background model for 1,801,268 bp. Use segment r for 80,889 bp 2025-01-31 10:03:40,384 DEBUG chr6:113597251-124661251: Successfully fit background model for 9,898,677 bp. Use segment r for 0 bp 2025-01-31 10:03:40,463 DEBUG chr6:124661251-125341251: Successfully fit background model for 653,900 bp. Use segment r for 0 bp 2025-01-31 10:03:40,539 DEBUG chr7:98050751-102269251: Successfully fit background model for 4,118,090 bp. Use segment r for 0 bp 2025-01-31 10:03:40,773 DEBUG chr6:125341251-128855251: Successfully fit background model for 3,372,989 bp. Use segment r for 0 bp 2025-01-31 10:03:40,800 DEBUG chr10:66046251-71794751: Successfully fit background model for 5,405,423 bp. Use segment r for 0 bp 2025-01-31 10:03:41,028 DEBUG chr10:71794751-74346501: Successfully fit background model for 2,311,925 bp. Use segment r for 0 bp 2025-01-31 10:03:41,140 DEBUG chr10:74346501-75550251: Successfully fit background model for 1,120,254 bp. Use segment r for 0 bp 2025-01-31 10:03:41,193 DEBUG chr7:102269251-109089751: Successfully fit background model for 5,509,759 bp. Use segment r for 0 bp 2025-01-31 10:03:41,331 DEBUG chr6:128855251-134790251: Successfully fit background model for 4,973,753 bp. Use segment r for 0 bp 2025-01-31 10:03:41,361 DEBUG chr7:109089751-110890251: Successfully fit background model for 1,743,479 bp. Use segment r for 0 bp 2025-01-31 10:03:41,386 DEBUG chr10:75550251-78383751: Successfully fit background model for 2,740,176 bp. Use segment r for 0 bp 2025-01-31 10:03:41,503 DEBUG chr10:78383751-79608751: Successfully fit background model for 1,025,328 bp. Use segment r for 0 bp 2025-01-31 10:03:41,516 DEBUG chr6:134790251-136861251: Successfully fit background model for 2,005,159 bp. Use segment r for 0 bp 2025-01-31 10:03:41,689 DEBUG chr10:79608751-81652251: Successfully fit background model for 2,008,463 bp. Use segment r for 0 bp 2025-01-31 10:03:41,710 DEBUG chr6:136861251-139081751: Successfully fit background model for 2,087,550 bp. Use segment r for 0 bp 2025-01-31 10:03:42,812 DEBUG chr6:139081751-149736546: Successfully fit background model for 9,811,028 bp. Use segment r for 0 bp 2025-01-31 10:03:42,914 DEBUG chr7:110890251-125385751: Successfully fit background model for 13,822,083 bp. Use segment r for 0 bp 2025-01-31 10:03:43,014 DEBUG chr7:125385751-126243751: Successfully fit background model for 834,999 bp. Use segment r for 0 bp 2025-01-31 10:03:43,218 DEBUG chr7:126243751-128459751: Successfully fit background model for 2,133,664 bp. Use segment r for 0 bp 2025-01-31 10:03:43,691 DEBUG chr10:81652251-100663001: Successfully fit background model for 17,466,309 bp. Use segment r for 0 bp 2025-01-31 10:03:44,552 DEBUG chr7:128459751-140805251: Successfully fit background model for 11,786,414 bp. Use segment r for 0 bp 2025-01-31 10:03:44,636 DEBUG chr7:140805251-141508251: Successfully fit background model for 686,900 bp. Use segment r for 0 bp 2025-01-31 10:03:44,638 DEBUG chr10:100663001-109891251: Successfully fit background model for 8,433,613 bp. Use segment r for 0 bp 2025-01-31 10:03:44,934 DEBUG chr10:109891251-113063751: Successfully fit background model for 2,910,454 bp. Use segment r for 0 bp 2025-01-31 10:03:45,020 DEBUG chr7:141508251-145441459: Successfully fit background model for 3,662,058 bp. Use segment r for 0 bp 2025-01-31 10:03:45,030 DEBUG chr10:113063751-114057751: Successfully fit background model for 929,241 bp. Use segment r for 0 bp 2025-01-31 10:03:46,212 DEBUG chr10:114057751-123910251: Successfully fit background model for 9,251,765 bp. Use segment r for 0 bp 2025-01-31 10:03:46,480 DEBUG chr10:123910251-126895751: Successfully fit background model for 2,775,763 bp. Use segment r for 0 bp 2025-01-31 10:03:46,657 DEBUG chr10:126895751-128808251: Successfully fit background model for 1,857,491 bp. Use segment r for 0 bp 2025-01-31 10:03:46,714 DEBUG chr10:128808251-129373751: Successfully fit background model for 471,841 bp. Use segment r for 0 bp 2025-01-31 10:03:46,851 DEBUG chr10:129373751-130694993: Successfully fit background model for 1,024,443 bp. Use segment r for 0 bp 2025-01-31 10:03:51,477 DEBUG chr8:3070000-4680751: Successfully fit background model for 1,414,788 bp. Use segment r for 0 bp 2025-01-31 10:03:51,624 DEBUG chr14:3032500-5127001: Successfully fit background model for 73,794 bp. Use segment r for 343 bp 2025-01-31 10:03:51,915 DEBUG chr8:4680751-7846751: Successfully fit background model for 2,783,850 bp. Use segment r for 0 bp 2025-01-31 10:03:52,187 DEBUG chr8:7846751-9706751: Successfully fit background model for 1,766,089 bp. Use segment r for 0 bp 2025-01-31 10:03:53,031 DEBUG chr8:9706751-15379751: Successfully fit background model for 5,485,136 bp. Use segment r for 0 bp 2025-01-31 10:03:53,569 DEBUG chr8:15379751-17836251: Successfully fit background model for 2,219,252 bp. Use segment r for 7,351 bp 2025-01-31 10:03:53,883 DEBUG chr14:5841000-19699751: Successfully fit background model for 10,945,785 bp. Use segment r for 1,819 bp 2025-01-31 10:03:54,088 DEBUG chr14:19699751-21836751: Successfully fit background model for 2,067,324 bp. Use segment r for 0 bp 2025-01-31 10:03:54,844 DEBUG chr14:21836751-29859751: Successfully fit background model for 7,247,249 bp. Use segment r for 0 bp 2025-01-31 10:03:55,047 DEBUG chr14:29859751-31953751: Successfully fit background model for 2,038,313 bp. Use segment r for 0 bp 2025-01-31 10:03:55,290 DEBUG chr8:17836251-25546251: Successfully fit background model for 5,649,991 bp. Use segment r for 16,432 bp 2025-01-31 10:03:55,359 DEBUG chr14:31953751-35270751: Successfully fit background model for 3,185,237 bp. Use segment r for 0 bp 2025-01-31 10:03:55,544 DEBUG chr14:35270751-37317251: Successfully fit background model for 1,854,746 bp. Use segment r for 0 bp 2025-01-31 10:03:55,556 DEBUG chr8:25546251-27620251: Successfully fit background model for 1,959,258 bp. Use segment r for 0 bp 2025-01-31 10:03:55,877 DEBUG chr14:37317251-40892751: Successfully fit background model for 3,195,693 bp. Use segment r for 0 bp 2025-01-31 10:03:55,896 DEBUG chr8:27620251-30443251: Successfully fit background model for 2,489,061 bp. Use segment r for 0 bp 2025-01-31 10:03:56,266 DEBUG chr8:30443251-33593251: Successfully fit background model for 2,911,185 bp. Use segment r for 0 bp 2025-01-31 10:03:56,517 DEBUG chr14:40892751-45278751: Successfully fit background model for 1,521,499 bp. Use segment r for 321 bp 2025-01-31 10:03:56,619 DEBUG chr8:33593251-37356251: Successfully fit background model for 3,574,138 bp. Use segment r for 0 bp 2025-01-31 10:03:57,041 DEBUG chr14:45278751-49897751: Successfully fit background model for 4,381,763 bp. Use segment r for 0 bp 2025-01-31 10:03:57,201 DEBUG chr14:49897751-50765751: Successfully fit background model for 709,105 bp. Use segment r for 0 bp 2025-01-31 10:03:57,240 DEBUG chr14:50765751-51105251: Successfully fit background model for 322,796 bp. Use segment r for 0 bp 2025-01-31 10:03:57,331 DEBUG chr14:51105251-51883751: Successfully fit background model for 598,663 bp. Use segment r for 0 bp 2025-01-31 10:03:57,381 DEBUG chr14:51883751-52399751: Successfully fit background model for 493,044 bp. Use segment r for 0 bp 2025-01-31 10:03:57,571 DEBUG chr14:52399751-54352251: Successfully fit background model for 1,152,744 bp. Use segment r for 0 bp 2025-01-31 10:03:57,604 DEBUG chr8:37356251-43917501: Successfully fit background model for 5,786,689 bp. Use segment r for 0 bp 2025-01-31 10:03:57,769 DEBUG chr14:54352251-55640751: Successfully fit background model for 1,234,626 bp. Use segment r for 0 bp 2025-01-31 10:03:58,499 DEBUG chr8:43917501-48977251: Successfully fit background model for 4,791,880 bp. Use segment r for 0 bp 2025-01-31 10:03:59,356 DEBUG chr8:48977251-53994751: Successfully fit background model for 4,570,956 bp. Use segment r for 0 bp 2025-01-31 10:03:59,596 DEBUG chr14:55640751-71259751: Successfully fit background model for 14,435,751 bp. Use segment r for 0 bp 2025-01-31 10:03:59,750 DEBUG chr14:71259751-72790251: Successfully fit background model for 1,413,025 bp. Use segment r for 0 bp 2025-01-31 10:03:59,934 DEBUG chr8:53994751-57486251: Successfully fit background model for 2,815,592 bp. Use segment r for 0 bp 2025-01-31 10:03:59,972 DEBUG chr8:57486251-57537251: Successfully fit background model for 50,037 bp. Use segment r for 0 bp 2025-01-31 10:04:00,449 DEBUG chr14:72790251-79958751: Successfully fit background model for 6,738,895 bp. Use segment r for 0 bp 2025-01-31 10:04:00,731 DEBUG chr8:57537251-60858251: Successfully fit background model for 2,907,917 bp. Use segment r for 0 bp 2025-01-31 10:04:00,755 DEBUG chr8:60858251-60994251: Successfully fit background model for 133,751 bp. Use segment r for 0 bp 2025-01-31 10:04:01,045 DEBUG chr14:79958751-86151751: Successfully fit background model for 5,540,416 bp. Use segment r for 0 bp 2025-01-31 10:04:01,184 DEBUG chr14:86151751-87621001: Successfully fit background model for 1,373,855 bp. Use segment r for 0 bp 2025-01-31 10:04:02,414 DEBUG chr14:87621001-99030251: Successfully fit background model for 10,383,874 bp. Use segment r for 0 bp 2025-01-31 10:04:03,087 DEBUG chr14:99030251-106092251: Successfully fit background model for 6,517,666 bp. Use segment r for 0 bp 2025-01-31 10:04:03,643 DEBUG chr8:60994251-69789251: Successfully fit background model for 7,841,929 bp. Use segment r for 1,726 bp 2025-01-31 10:04:03,838 DEBUG chr14:106092251-114207251: Successfully fit background model for 7,282,764 bp. Use segment r for 0 bp 2025-01-31 10:04:03,888 DEBUG chr8:69789251-70936751: Successfully fit background model for 1,129,436 bp. Use segment r for 0 bp 2025-01-31 10:04:04,016 DEBUG chr14:114207251-116086251: Successfully fit background model for 1,709,921 bp. Use segment r for 0 bp 2025-01-31 10:04:04,286 DEBUG chr8:70936751-72539251: Successfully fit background model for 1,354,562 bp. Use segment r for 0 bp 2025-01-31 10:04:04,458 DEBUG chr14:116086251-121251751: Successfully fit background model for 4,822,386 bp. Use segment r for 0 bp 2025-01-31 10:04:04,535 DEBUG chr14:121251751-121987751: Successfully fit background model for 723,333 bp. Use segment r for 0 bp 2025-01-31 10:04:04,537 DEBUG chr9:3002500-7568751: Successfully fit background model for 3,957,739 bp. Use segment r for 0 bp 2025-01-31 10:04:04,577 DEBUG chr9:7568751-7906751: Successfully fit background model for 306,370 bp. Use segment r for 0 bp 2025-01-31 10:04:04,719 DEBUG chr8:72539251-75027751: Successfully fit background model for 2,131,309 bp. Use segment r for 0 bp 2025-01-31 10:04:04,747 DEBUG chr8:75027751-75267251: Successfully fit background model for 218,810 bp. Use segment r for 0 bp 2025-01-31 10:04:04,814 DEBUG chr14:121987751-124902244: Successfully fit background model for 2,439,947 bp. Use segment r for 0 bp 2025-01-31 10:04:04,843 DEBUG chr8:75267251-76160751: Successfully fit background model for 771,704 bp. Use segment r for 0 bp 2025-01-31 10:04:05,074 DEBUG chr9:7906751-13189751: Successfully fit background model for 4,653,569 bp. Use segment r for 0 bp 2025-01-31 10:04:05,276 DEBUG chr9:13189751-15438251: Successfully fit background model for 2,050,688 bp. Use segment r for 0 bp 2025-01-31 10:04:05,551 DEBUG chr8:76160751-83566251: Successfully fit background model for 6,883,772 bp. Use segment r for 0 bp 2025-01-31 10:04:05,693 DEBUG chr8:83566251-85086751: Successfully fit background model for 1,493,251 bp. Use segment r for 0 bp 2025-01-31 10:04:05,712 DEBUG chr9:15438251-20470251: Successfully fit background model for 4,424,746 bp. Use segment r for 0 bp 2025-01-31 10:04:05,877 DEBUG chr9:20470251-22144751: Successfully fit background model for 1,617,935 bp. Use segment r for 0 bp 2025-01-31 10:04:06,197 DEBUG chr9:22144751-25659751: Successfully fit background model for 3,230,228 bp. Use segment r for 0 bp 2025-01-31 10:04:06,651 DEBUG chr8:85086751-93905751: Successfully fit background model for 8,421,404 bp. Use segment r for 0 bp 2025-01-31 10:04:06,694 DEBUG chr9:25659751-31068751: Successfully fit background model for 5,133,699 bp. Use segment r for 0 bp 2025-01-31 10:04:06,852 DEBUG chr9:31068751-32804751: Successfully fit background model for 1,681,322 bp. Use segment r for 0 bp 2025-01-31 10:04:06,883 DEBUG chr8:93905751-96500251: Successfully fit background model for 2,463,732 bp. Use segment r for 0 bp 2025-01-31 10:04:06,957 DEBUG chr9:32804751-33990251: Successfully fit background model for 1,074,801 bp. Use segment r for 0 bp 2025-01-31 10:04:07,319 DEBUG chr9:33990251-37732751: Successfully fit background model for 3,429,206 bp. Use segment r for 0 bp 2025-01-31 10:04:07,485 DEBUG chr8:96500251-103013251: Successfully fit background model for 5,953,477 bp. Use segment r for 0 bp 2025-01-31 10:04:07,507 DEBUG chr9:37732751-39819751: Successfully fit background model for 1,880,142 bp. Use segment r for 0 bp 2025-01-31 10:04:07,600 DEBUG chr9:39819751-40757251: Successfully fit background model for 849,626 bp. Use segment r for 0 bp 2025-01-31 10:04:07,609 DEBUG chr9:40757251-40812251: Successfully fit background model for 51,850 bp. Use segment r for 0 bp 2025-01-31 10:04:07,628 DEBUG chr8:103013251-104531251: Successfully fit background model for 1,447,962 bp. Use segment r for 0 bp 2025-01-31 10:04:07,811 DEBUG chr9:40812251-43091251: Successfully fit background model for 2,232,942 bp. Use segment r for 0 bp 2025-01-31 10:04:07,858 DEBUG chr8:104531251-107265751: Successfully fit background model for 2,557,283 bp. Use segment r for 0 bp 2025-01-31 10:04:08,067 DEBUG chr9:43091251-45904751: Successfully fit background model for 2,760,370 bp. Use segment r for 0 bp 2025-01-31 10:04:08,138 DEBUG chr8:107265751-110598251: Successfully fit background model for 3,237,900 bp. Use segment r for 0 bp 2025-01-31 10:04:08,255 DEBUG chr8:110598251-111848251: Successfully fit background model for 1,217,291 bp. Use segment r for 0 bp 2025-01-31 10:04:08,942 DEBUG chr8:111848251-116865751: Successfully fit background model for 4,548,367 bp. Use segment r for 285,007 bp 2025-01-31 10:04:09,155 DEBUG chr8:116865751-119348251: Successfully fit background model for 2,410,070 bp. Use segment r for 0 bp 2025-01-31 10:04:09,240 DEBUG chr9:45904751-56720251: Successfully fit background model for 10,289,553 bp. Use segment r for 0 bp 2025-01-31 10:04:09,511 DEBUG chr9:56720251-59752251: Successfully fit background model for 2,946,521 bp. Use segment r for 0 bp 2025-01-31 10:04:09,598 DEBUG chr8:119348251-123991251: Successfully fit background model for 4,441,659 bp. Use segment r for 0 bp 2025-01-31 10:04:09,655 DEBUG chr9:59752251-61258751: Successfully fit background model for 1,465,034 bp. Use segment r for 0 bp 2025-01-31 10:04:09,818 DEBUG chr8:123991251-126552751: Successfully fit background model for 2,472,020 bp. Use segment r for 0 bp 2025-01-31 10:04:09,833 DEBUG chr8:126552751-126603751: Successfully fit background model for 50,492 bp. Use segment r for 0 bp 2025-01-31 10:04:10,101 DEBUG chr8:126603751-129401213: Successfully fit background model for 2,503,541 bp. Use segment r for 0 bp 2025-01-31 10:04:10,189 DEBUG chr9:61258751-66973251: Successfully fit background model for 5,567,922 bp. Use segment r for 0 bp 2025-01-31 10:04:11,157 DEBUG chr9:66973251-76238751: Successfully fit background model for 8,811,107 bp. Use segment r for 0 bp 2025-01-31 10:04:11,308 DEBUG chr9:76238751-77749251: Successfully fit background model for 1,422,345 bp. Use segment r for 0 bp 2025-01-31 10:04:11,418 DEBUG chr9:77749251-78872251: Successfully fit background model for 1,006,117 bp. Use segment r for 0 bp 2025-01-31 10:04:12,659 DEBUG chr9:78872251-90112751: Successfully fit background model for 9,820,440 bp. Use segment r for 0 bp 2025-01-31 10:04:12,717 DEBUG chr9:90112751-90590751: Successfully fit background model for 420,911 bp. Use segment r for 0 bp 2025-01-31 10:04:13,027 DEBUG chr9:90590751-93918751: Successfully fit background model for 2,957,958 bp. Use segment r for 0 bp 2025-01-31 10:04:14,335 DEBUG chr9:93918751-106140251: Successfully fit background model for 11,657,069 bp. Use segment r for 0 bp 2025-01-31 10:04:14,421 DEBUG chr9:106140251-106926001: Successfully fit background model for 754,010 bp. Use segment r for 0 bp 2025-01-31 10:04:14,460 DEBUG chr9:106926001-107246251: Successfully fit background model for 278,500 bp. Use segment r for 0 bp 2025-01-31 10:04:14,625 DEBUG chr9:107246251-108964251: Successfully fit background model for 1,635,130 bp. Use segment r for 0 bp 2025-01-31 10:04:14,945 DEBUG chr9:108964251-110849251: Successfully fit background model for 1,685,567 bp. Use segment r for 0 bp 2025-01-31 10:04:16,013 DEBUG chr9:110849251-119320251: Successfully fit background model for 7,997,316 bp. Use segment r for 0 bp 2025-01-31 10:04:16,492 DEBUG chr9:119320251-124595110: Successfully fit background model for 4,732,153 bp. Use segment r for 0 bp 2025-01-31 10:05:07,989 DEBUG chr11:3100500-3203251: Successfully fit background model for 75,714 bp. Use segment r for 0 bp 2025-01-31 10:05:08,199 DEBUG chr13:3000500-4190751: Successfully fit background model for 985,571 bp. Use segment r for 0 bp 2025-01-31 10:05:08,310 DEBUG chr11:3203251-6715251: Successfully fit background model for 3,377,244 bp. Use segment r for 0 bp 2025-01-31 10:05:08,528 DEBUG chr11:6715251-9205751: Successfully fit background model for 2,249,287 bp. Use segment r for 0 bp 2025-01-31 10:05:08,632 DEBUG chr13:4190751-8742251: Successfully fit background model for 4,042,078 bp. Use segment r for 0 bp 2025-01-31 10:05:08,698 DEBUG chr11:9205751-11203251: Successfully fit background model for 1,767,147 bp. Use segment r for 0 bp 2025-01-31 10:05:08,819 DEBUG chr11:11203251-12579751: Successfully fit background model for 1,257,318 bp. Use segment r for 0 bp 2025-01-31 10:05:09,166 DEBUG chr11:12579751-16224751: Successfully fit background model for 3,211,137 bp. Use segment r for 0 bp 2025-01-31 10:05:09,168 DEBUG chr13:8742251-14708251: Successfully fit background model for 5,083,887 bp. Use segment r for 0 bp 2025-01-31 10:05:09,270 DEBUG chr11:16224751-17285751: Successfully fit background model for 960,889 bp. Use segment r for 0 bp 2025-01-31 10:05:09,448 DEBUG chr11:17285751-19390001: Successfully fit background model for 1,934,386 bp. Use segment r for 0 bp 2025-01-31 10:05:09,753 DEBUG chr13:14708251-21158251: Successfully fit background model for 5,813,146 bp. Use segment r for 0 bp 2025-01-31 10:05:09,817 DEBUG chr13:21158251-21709751: Successfully fit background model for 513,886 bp. Use segment r for 0 bp 2025-01-31 10:05:09,859 DEBUG chr13:21709751-22056751: Successfully fit background model for 291,397 bp. Use segment r for 0 bp 2025-01-31 10:05:09,913 DEBUG chr11:19390001-24237751: Successfully fit background model for 4,569,879 bp. Use segment r for 0 bp 2025-01-31 10:05:09,977 DEBUG chr13:22056751-23284251: Successfully fit background model for 921,065 bp. Use segment r for 0 bp 2025-01-31 10:05:10,024 DEBUG chr13:23284251-23765251: Successfully fit background model for 445,943 bp. Use segment r for 0 bp 2025-01-31 10:05:10,184 DEBUG chr13:23765251-25467751: Successfully fit background model for 1,595,019 bp. Use segment r for 0 bp 2025-01-31 10:05:10,296 DEBUG chr11:24237751-28823751: Successfully fit background model for 4,127,573 bp. Use segment r for 0 bp 2025-01-31 10:05:10,401 DEBUG chr13:25467751-27865751: Successfully fit background model for 2,165,364 bp. Use segment r for 0 bp 2025-01-31 10:05:10,861 DEBUG chr11:28823751-34853001: Successfully fit background model for 5,535,994 bp. Use segment r for 0 bp 2025-01-31 10:05:10,993 DEBUG chr11:34853001-36309501: Successfully fit background model for 1,423,538 bp. Use segment r for 0 bp 2025-01-31 10:05:11,572 DEBUG chr11:36309501-42340251: Successfully fit background model for 5,586,046 bp. Use segment r for 0 bp 2025-01-31 10:05:12,015 DEBUG chr11:42340251-47382751: Successfully fit background model for 4,756,482 bp. Use segment r for 0 bp 2025-01-31 10:05:12,059 DEBUG chr13:27865751-43170751: Successfully fit background model for 14,167,878 bp. Use segment r for 0 bp 2025-01-31 10:05:12,150 DEBUG chr11:47382751-48774001: Successfully fit background model for 1,227,904 bp. Use segment r for 0 bp 2025-01-31 10:05:12,167 DEBUG chr11:48774001-48875751: Successfully fit background model for 98,895 bp. Use segment r for 0 bp 2025-01-31 10:05:12,320 DEBUG chr13:43170751-45967751: Successfully fit background model for 2,724,791 bp. Use segment r for 0 bp 2025-01-31 10:05:12,552 DEBUG chr13:45967751-48544751: Successfully fit background model for 2,489,776 bp. Use segment r for 0 bp 2025-01-31 10:05:12,617 DEBUG chr13:48544751-49204251: Successfully fit background model for 650,001 bp. Use segment r for 0 bp 2025-01-31 10:05:12,778 DEBUG chr11:48875751-55459251: Successfully fit background model for 6,180,454 bp. Use segment r for 0 bp 2025-01-31 10:05:12,796 DEBUG chr11:55459251-55521251: Successfully fit background model for 60,785 bp. Use segment r for 0 bp 2025-01-31 10:05:12,907 DEBUG chr11:55521251-56772251: Successfully fit background model for 1,158,857 bp. Use segment r for 0 bp 2025-01-31 10:05:13,104 DEBUG chr11:56772251-58902751: Successfully fit background model for 2,014,281 bp. Use segment r for 0 bp 2025-01-31 10:05:13,122 DEBUG chr13:49204251-54503251: Successfully fit background model for 4,689,861 bp. Use segment r for 0 bp 2025-01-31 10:05:13,238 DEBUG chr13:54503251-55703751: Successfully fit background model for 1,159,063 bp. Use segment r for 0 bp 2025-01-31 10:05:13,439 DEBUG chr11:58902751-62538251: Successfully fit background model for 3,456,785 bp. Use segment r for 0 bp 2025-01-31 10:05:13,468 DEBUG chr13:55703751-58005251: Successfully fit background model for 2,247,856 bp. Use segment r for 0 bp 2025-01-31 10:05:13,734 DEBUG chr13:58005251-60925001: Successfully fit background model for 2,793,750 bp. Use segment r for 0 bp 2025-01-31 10:05:14,031 DEBUG chr13:60925001-63038251: Successfully fit background model for 1,568,815 bp. Use segment r for 37,130 bp 2025-01-31 10:05:14,041 DEBUG chr11:62538251-68965751: Successfully fit background model for 6,202,405 bp. Use segment r for 0 bp 2025-01-31 10:05:14,067 DEBUG chr11:68965751-69127251: Successfully fit background model for 159,068 bp. Use segment r for 0 bp 2025-01-31 10:05:14,160 DEBUG chr13:63038251-64327251: Successfully fit background model for 1,236,660 bp. Use segment r for 0 bp 2025-01-31 10:05:14,213 DEBUG chr11:69127251-70703751: Successfully fit background model for 1,539,027 bp. Use segment r for 0 bp 2025-01-31 10:05:14,458 DEBUG chr11:70703751-73330251: Successfully fit background model for 2,485,877 bp. Use segment r for 0 bp 2025-01-31 10:05:14,531 DEBUG chr11:73330251-74049001: Successfully fit background model for 586,518 bp. Use segment r for 0 bp 2025-01-31 10:05:14,612 DEBUG chr11:74049001-74829251: Successfully fit background model for 716,920 bp. Use segment r for 0 bp 2025-01-31 10:05:14,623 DEBUG chr11:74829251-74899251: Successfully fit background model for 62,292 bp. Use segment r for 0 bp 2025-01-31 10:05:14,879 DEBUG chr12:3000500-5402251: Successfully fit background model for 2,207,998 bp. Use segment r for 0 bp 2025-01-31 10:05:15,024 DEBUG chr12:5402251-6978251: Successfully fit background model for 1,410,044 bp. Use segment r for 0 bp 2025-01-31 10:05:15,062 DEBUG chr11:74899251-79576251: Successfully fit background model for 4,551,526 bp. Use segment r for 0 bp 2025-01-31 10:05:15,287 DEBUG chr12:6978251-9821751: Successfully fit background model for 2,624,809 bp. Use segment r for 0 bp 2025-01-31 10:05:15,520 DEBUG chr11:79576251-84561251: Successfully fit background model for 4,765,958 bp. Use segment r for 0 bp 2025-01-31 10:05:15,689 DEBUG chr13:64327251-73248751: Successfully fit background model for 6,829,807 bp. Use segment r for 5,223 bp 2025-01-31 10:05:15,766 DEBUG chr13:73248751-73942251: Successfully fit background model for 681,224 bp. Use segment r for 0 bp 2025-01-31 10:05:15,810 DEBUG chr12:9821751-15339751: Successfully fit background model for 4,992,170 bp. Use segment r for 0 bp 2025-01-31 10:05:15,892 DEBUG chr15:3050500-5104751: Successfully fit background model for 1,748,713 bp. Use segment r for 0 bp 2025-01-31 10:05:15,967 DEBUG chr11:84561251-89651751: Successfully fit background model for 4,932,085 bp. Use segment r for 0 bp 2025-01-31 10:05:15,991 DEBUG chr13:73942251-76491251: Successfully fit background model for 2,297,254 bp. Use segment r for 0 bp 2025-01-31 10:05:16,079 DEBUG chr11:89651751-90797751: Successfully fit background model for 1,088,997 bp. Use segment r for 0 bp 2025-01-31 10:05:16,155 DEBUG chr13:76491251-78154751: Successfully fit background model for 1,454,555 bp. Use segment r for 0 bp 2025-01-31 10:05:16,171 DEBUG chr13:78154751-78212251: Successfully fit background model for 56,934 bp. Use segment r for 0 bp 2025-01-31 10:05:16,302 DEBUG chr11:90797751-93376751: Successfully fit background model for 2,379,894 bp. Use segment r for 0 bp 2025-01-31 10:05:16,386 DEBUG chr11:93376751-94208251: Successfully fit background model for 789,169 bp. Use segment r for 0 bp 2025-01-31 10:05:16,408 DEBUG chr13:78212251-80881751: Successfully fit background model for 2,397,277 bp. Use segment r for 0 bp 2025-01-31 10:05:16,421 DEBUG chr13:80881751-80942251: Successfully fit background model for 60,186 bp. Use segment r for 0 bp 2025-01-31 10:05:16,498 DEBUG chr13:80942251-81631751: Successfully fit background model for 647,837 bp. Use segment r for 0 bp 2025-01-31 10:05:16,517 DEBUG chr13:81631751-81786251: Successfully fit background model for 144,768 bp. Use segment r for 0 bp 2025-01-31 10:05:16,637 DEBUG chr11:94208251-96772751: Successfully fit background model for 2,503,312 bp. Use segment r for 0 bp 2025-01-31 10:05:16,707 DEBUG chr13:81786251-83694751: Successfully fit background model for 1,751,261 bp. Use segment r for 0 bp 2025-01-31 10:05:16,708 DEBUG chr15:5104751-13351251: Successfully fit background model for 7,595,080 bp. Use segment r for 0 bp 2025-01-31 10:05:16,718 DEBUG chr13:83694751-83745751: Successfully fit background model for 48,641 bp. Use segment r for 0 bp 2025-01-31 10:05:16,882 DEBUG chr11:96772751-99465751: Successfully fit background model for 2,634,479 bp. Use segment r for 0 bp 2025-01-31 10:05:16,960 DEBUG chr11:99465751-100278001: Successfully fit background model for 747,916 bp. Use segment r for 0 bp 2025-01-31 10:05:17,350 DEBUG chr12:15339751-24560251: Successfully fit background model for 4,683,551 bp. Use segment r for 317 bp 2025-01-31 10:05:17,398 DEBUG chr12:24560251-24884751: Successfully fit background model for 309,981 bp. Use segment r for 0 bp 2025-01-31 10:05:17,450 DEBUG chr13:83745751-90126251: Successfully fit background model for 5,684,386 bp. Use segment r for 0 bp 2025-01-31 10:05:17,919 DEBUG chr11:100278001-108432251: Successfully fit background model for 7,884,431 bp. Use segment r for 0 bp 2025-01-31 10:05:17,986 DEBUG chr13:90126251-95372251: Successfully fit background model for 4,902,016 bp. Use segment r for 0 bp 2025-01-31 10:05:18,124 DEBUG chr11:108432251-110584751: Successfully fit background model for 2,067,689 bp. Use segment r for 0 bp 2025-01-31 10:05:18,127 DEBUG chr12:24884751-31496251: Successfully fit background model for 6,277,189 bp. Use segment r for 0 bp 2025-01-31 10:05:18,291 DEBUG chr11:110584751-112341751: Successfully fit background model for 1,678,074 bp. Use segment r for 0 bp 2025-01-31 10:05:18,311 DEBUG chr12:31496251-33497751: Successfully fit background model for 1,888,111 bp. Use segment r for 0 bp 2025-01-31 10:05:18,374 DEBUG chr15:13351251-25730751: Successfully fit background model for 11,070,593 bp. Use segment r for 0 bp 2025-01-31 10:05:18,474 DEBUG chr13:95372251-100722751: Successfully fit background model for 5,044,626 bp. Use segment r for 0 bp 2025-01-31 10:05:18,533 DEBUG chr11:112341751-115151251: Successfully fit background model for 2,708,068 bp. Use segment r for 0 bp 2025-01-31 10:05:18,534 DEBUG chr15:25730751-27402251: Successfully fit background model for 1,548,051 bp. Use segment r for 0 bp 2025-01-31 10:05:18,564 DEBUG chr15:27402251-27555751: Successfully fit background model for 149,262 bp. Use segment r for 0 bp 2025-01-31 10:05:19,120 DEBUG chr11:115151251-120872251: Successfully fit background model for 5,572,104 bp. Use segment r for 0 bp 2025-01-31 10:05:19,241 DEBUG chr11:120872251-122082543: Successfully fit background model for 1,043,601 bp. Use segment r for 0 bp 2025-01-31 10:05:19,285 DEBUG chr15:27555751-34390251: Successfully fit background model for 6,191,217 bp. Use segment r for 0 bp 2025-01-31 10:05:19,444 DEBUG chr15:34390251-36109251: Successfully fit background model for 1,556,792 bp. Use segment r for 0 bp 2025-01-31 10:05:19,541 DEBUG chr15:36109251-37062251: Successfully fit background model for 912,265 bp. Use segment r for 0 bp 2025-01-31 10:05:19,646 DEBUG chr15:37062251-38253251: Successfully fit background model for 1,127,808 bp. Use segment r for 0 bp 2025-01-31 10:05:19,676 DEBUG chr15:38253251-38515751: Successfully fit background model for 251,572 bp. Use segment r for 0 bp 2025-01-31 10:05:19,763 DEBUG chr13:100722751-111488001: Successfully fit background model for 10,006,035 bp. Use segment r for 0 bp 2025-01-31 10:05:19,896 DEBUG chr13:111488001-112758751: Successfully fit background model for 1,221,071 bp. Use segment r for 0 bp 2025-01-31 10:05:20,115 DEBUG chr13:112758751-115187751: Successfully fit background model for 2,301,598 bp. Use segment r for 0 bp 2025-01-31 10:05:20,387 DEBUG chr15:38515751-44859251: Successfully fit background model for 5,701,275 bp. Use segment r for 0 bp 2025-01-31 10:05:20,485 DEBUG chr13:115187751-119360751: Successfully fit background model for 3,813,133 bp. Use segment r for 0 bp 2025-01-31 10:05:20,591 DEBUG chr13:119360751-120421639: Successfully fit background model for 468,107 bp. Use segment r for 0 bp 2025-01-31 10:05:20,922 DEBUG chr15:44859251-50776251: Successfully fit background model for 5,287,201 bp. Use segment r for 0 bp 2025-01-31 10:05:21,039 DEBUG chr12:33497751-46875251: Successfully fit background model for 12,096,241 bp. Use segment r for 93,190 bp 2025-01-31 10:05:21,248 DEBUG chr12:46875251-49010751: Successfully fit background model for 1,903,580 bp. Use segment r for 0 bp 2025-01-31 10:05:21,591 DEBUG chr15:50776251-57568751: Successfully fit background model for 6,217,300 bp. Use segment r for 0 bp 2025-01-31 10:05:21,765 DEBUG chr12:49010751-54152751: Successfully fit background model for 4,718,589 bp. Use segment r for 0 bp 2025-01-31 10:05:21,781 DEBUG chr15:57568751-59579251: Successfully fit background model for 1,947,532 bp. Use segment r for 0 bp 2025-01-31 10:05:21,893 DEBUG chr12:54152751-55418251: Successfully fit background model for 992,528 bp. Use segment r for 0 bp 2025-01-31 10:05:22,213 DEBUG chr15:59579251-63996751: Successfully fit background model for 4,003,506 bp. Use segment r for 0 bp 2025-01-31 10:05:22,253 DEBUG chr15:63996751-64324251: Successfully fit background model for 324,209 bp. Use segment r for 0 bp 2025-01-31 10:05:22,289 DEBUG chr12:55418251-59671251: Successfully fit background model for 3,861,118 bp. Use segment r for 0 bp 2025-01-31 10:05:22,515 DEBUG chr15:64324251-66666751: Successfully fit background model for 2,105,720 bp. Use segment r for 0 bp 2025-01-31 10:05:22,556 DEBUG chr15:66666751-67035251: Successfully fit background model for 358,038 bp. Use segment r for 0 bp 2025-01-31 10:05:22,726 DEBUG chr12:59671251-64102251: Successfully fit background model for 3,911,774 bp. Use segment r for 0 bp 2025-01-31 10:05:22,867 DEBUG chr12:64102251-65642751: Successfully fit background model for 1,384,724 bp. Use segment r for 0 bp 2025-01-31 10:05:23,182 DEBUG chr15:67035251-72783251: Successfully fit background model for 5,284,841 bp. Use segment r for 0 bp 2025-01-31 10:05:23,222 DEBUG chr12:65642751-69150751: Successfully fit background model for 3,168,632 bp. Use segment r for 0 bp 2025-01-31 10:05:23,459 DEBUG chr15:72783251-75652751: Successfully fit background model for 2,692,890 bp. Use segment r for 0 bp 2025-01-31 10:05:23,807 DEBUG chr12:69150751-73907251: Successfully fit background model for 4,557,406 bp. Use segment r for 0 bp 2025-01-31 10:05:24,037 DEBUG chr12:73907251-76176751: Successfully fit background model for 2,141,792 bp. Use segment r for 0 bp 2025-01-31 10:05:24,113 DEBUG chr12:76176751-76817751: Successfully fit background model for 599,693 bp. Use segment r for 0 bp 2025-01-31 10:05:24,173 DEBUG chr15:75652751-82380751: Successfully fit background model for 6,440,832 bp. Use segment r for 0 bp 2025-01-31 10:05:24,243 DEBUG chr15:82380751-82897751: Successfully fit background model for 437,848 bp. Use segment r for 0 bp 2025-01-31 10:05:24,475 DEBUG chr12:76817751-79936751: Successfully fit background model for 2,933,557 bp. Use segment r for 0 bp 2025-01-31 10:05:24,550 DEBUG chr15:82897751-85838251: Successfully fit background model for 2,859,093 bp. Use segment r for 0 bp 2025-01-31 10:05:24,829 DEBUG chr15:85838251-88707751: Successfully fit background model for 2,789,165 bp. Use segment r for 0 bp 2025-01-31 10:05:24,893 DEBUG chr15:88707751-89334251: Successfully fit background model for 599,805 bp. Use segment r for 0 bp 2025-01-31 10:05:25,645 DEBUG chr12:79936751-89212251: Successfully fit background model for 8,432,034 bp. Use segment r for 0 bp 2025-01-31 10:05:25,742 DEBUG chr12:89212251-90165751: Successfully fit background model for 925,693 bp. Use segment r for 0 bp 2025-01-31 10:05:25,959 DEBUG chr12:90165751-92202251: Successfully fit background model for 1,852,117 bp. Use segment r for 0 bp 2025-01-31 10:05:26,180 DEBUG chr15:89334251-98497251: Successfully fit background model for 8,653,098 bp. Use segment r for 0 bp 2025-01-31 10:05:26,290 DEBUG chr16:3092500-3842751: Successfully fit background model for 379,911 bp. Use segment r for 0 bp 2025-01-31 10:05:26,445 DEBUG chr16:3842751-5430751: Successfully fit background model for 1,524,633 bp. Use segment r for 0 bp 2025-01-31 10:05:26,459 DEBUG chr12:92202251-97587251: Successfully fit background model for 4,854,365 bp. Use segment r for 0 bp 2025-01-31 10:05:26,613 DEBUG chr12:97587251-99270751: Successfully fit background model for 1,563,621 bp. Use segment r for 0 bp 2025-01-31 10:05:26,636 DEBUG chr15:98497251-103368751: Successfully fit background model for 4,717,909 bp. Use segment r for 0 bp 2025-01-31 10:05:26,686 DEBUG chr16:5430751-7999251: Successfully fit background model for 2,465,911 bp. Use segment r for 0 bp 2025-01-31 10:05:26,706 DEBUG chr15:103368751-104043685: Successfully fit background model for 428,154 bp. Use segment r for 0 bp 2025-01-31 10:05:26,797 DEBUG chr16:7999251-9173251: Successfully fit background model for 1,089,301 bp. Use segment r for 0 bp 2025-01-31 10:05:26,915 DEBUG chr16:9173251-10507751: Successfully fit background model for 1,263,391 bp. Use segment r for 0 bp 2025-01-31 10:05:27,173 DEBUG chr12:99270751-105833251: Successfully fit background model for 6,159,264 bp. Use segment r for 0 bp 2025-01-31 10:05:27,300 DEBUG chr16:10507751-14546751: Successfully fit background model for 3,818,819 bp. Use segment r for 0 bp 2025-01-31 10:05:27,526 DEBUG chr16:14546751-17069251: Successfully fit background model for 2,202,166 bp. Use segment r for 0 bp 2025-01-31 10:05:27,566 DEBUG chr12:105833251-110376251: Successfully fit background model for 4,400,028 bp. Use segment r for 0 bp 2025-01-31 10:05:27,695 DEBUG chr16:17069251-18979751: Successfully fit background model for 1,842,272 bp. Use segment r for 0 bp 2025-01-31 10:05:27,773 DEBUG chr16:18979751-19720251: Successfully fit background model for 585,707 bp. Use segment r for 0 bp 2025-01-31 10:05:27,848 DEBUG chr12:110376251-113226251: Successfully fit background model for 2,768,961 bp. Use segment r for 0 bp 2025-01-31 10:05:28,118 DEBUG chr12:113226251-116262751: Successfully fit background model for 2,505,099 bp. Use segment r for 0 bp 2025-01-31 10:05:28,128 DEBUG chr16:19720251-23512751: Successfully fit background model for 3,555,029 bp. Use segment r for 0 bp 2025-01-31 10:05:28,309 DEBUG chr12:116262751-118349251: Successfully fit background model for 1,977,070 bp. Use segment r for 0 bp 2025-01-31 10:05:28,480 DEBUG chr12:118349251-120129022: Successfully fit background model for 1,492,792 bp. Use segment r for 0 bp 2025-01-31 10:05:28,669 DEBUG chr16:23512751-29324251: Successfully fit background model for 5,444,037 bp. Use segment r for 0 bp 2025-01-31 10:05:28,910 DEBUG chr17:3000000-15922251: Successfully fit background model for 10,896,288 bp. Use segment r for 0 bp 2025-01-31 10:05:29,723 DEBUG chr17:15922251-23531751: Successfully fit background model for 6,266,758 bp. Use segment r for 0 bp 2025-01-31 10:05:30,008 DEBUG chr16:29324251-39143751: Successfully fit background model for 9,385,533 bp. Use segment r for 0 bp 2025-01-31 10:05:30,233 DEBUG chr17:23531751-29316251: Successfully fit background model for 5,598,386 bp. Use segment r for 0 bp 2025-01-31 10:05:30,834 DEBUG chr17:29316251-33816751: Successfully fit background model for 4,220,273 bp. Use segment r for 0 bp 2025-01-31 10:05:30,906 DEBUG chr17:33816751-34147251: Successfully fit background model for 312,998 bp. Use segment r for 0 bp 2025-01-31 10:05:31,133 DEBUG chr17:34147251-36286751: Successfully fit background model for 1,921,664 bp. Use segment r for 0 bp 2025-01-31 10:05:31,216 DEBUG chr17:36286751-37163751: Successfully fit background model for 773,209 bp. Use segment r for 0 bp 2025-01-31 10:05:31,597 DEBUG chr16:39143751-50916251: Successfully fit background model for 10,834,638 bp. Use segment r for 0 bp 2025-01-31 10:05:31,748 DEBUG chr17:37163751-42572251: Successfully fit background model for 4,590,597 bp. Use segment r for 0 bp 2025-01-31 10:05:31,916 DEBUG chr17:42572251-44371751: Successfully fit background model for 1,716,614 bp. Use segment r for 0 bp 2025-01-31 10:05:32,029 DEBUG chr16:50916251-55815251: Successfully fit background model for 4,368,711 bp. Use segment r for 0 bp 2025-01-31 10:05:32,036 DEBUG chr17:44371751-45548751: Successfully fit background model for 1,130,339 bp. Use segment r for 0 bp 2025-01-31 10:05:32,295 DEBUG chr16:55815251-58761251: Successfully fit background model for 2,651,539 bp. Use segment r for 0 bp 2025-01-31 10:05:32,344 DEBUG chr17:45548751-48669251: Successfully fit background model for 3,020,404 bp. Use segment r for 0 bp 2025-01-31 10:05:32,622 DEBUG chr17:48669251-51371751: Successfully fit background model for 2,620,009 bp. Use segment r for 0 bp 2025-01-31 10:05:33,143 DEBUG chr16:58761251-64400001: Successfully fit background model for 5,001,510 bp. Use segment r for 0 bp 2025-01-31 10:05:33,157 DEBUG chr17:51371751-55944251: Successfully fit background model for 4,018,584 bp. Use segment r for 0 bp 2025-01-31 10:05:33,321 DEBUG chr17:55944251-57363251: Successfully fit background model for 1,389,666 bp. Use segment r for 0 bp 2025-01-31 10:05:34,076 DEBUG chr17:57363251-62578751: Successfully fit background model for 4,688,740 bp. Use segment r for 0 bp 2025-01-31 10:05:35,854 DEBUG chr17:62578751-76035251: Successfully fit background model for 12,644,312 bp. Use segment r for 0 bp 2025-01-31 10:05:36,131 DEBUG chr17:76035251-77729501: Successfully fit background model for 1,553,395 bp. Use segment r for 0 bp 2025-01-31 10:05:36,756 DEBUG chr17:77729501-81291751: Successfully fit background model for 3,384,255 bp. Use segment r for 0 bp 2025-01-31 10:05:36,895 DEBUG chr17:81291751-82494251: Successfully fit background model for 1,099,353 bp. Use segment r for 0 bp 2025-01-31 10:05:37,098 DEBUG chr17:82494251-83850251: Successfully fit background model for 1,246,065 bp. Use segment r for 0 bp 2025-01-31 10:05:37,870 DEBUG chr16:64400001-87429001: Successfully fit background model for 20,927,819 bp. Use segment r for 0 bp 2025-01-31 10:05:37,889 DEBUG chr17:83850251-89067751: Successfully fit background model for 5,051,466 bp. Use segment r for 0 bp 2025-01-31 10:05:37,938 DEBUG chr16:87429001-87623751: Successfully fit background model for 190,159 bp. Use segment r for 0 bp 2025-01-31 10:05:38,148 DEBUG chr16:87623751-89770751: Successfully fit background model for 1,994,659 bp. Use segment r for 0 bp 2025-01-31 10:05:38,595 DEBUG chr16:89770751-94483751: Successfully fit background model for 4,568,960 bp. Use segment r for 0 bp 2025-01-31 10:05:38,711 DEBUG chr17:89067751-94987271: Successfully fit background model for 5,260,521 bp. Use segment r for 0 bp 2025-01-31 10:05:38,907 DEBUG chr16:94483751-98207768: Successfully fit background model for 3,466,981 bp. Use segment r for 0 bp 2025-01-31 10:06:29,100 DEBUG chr19:3080000-7501751: Successfully fit background model for 4,119,257 bp. Use segment r for 0 bp 2025-01-31 10:06:29,218 DEBUG chr19:7501751-8695251: Successfully fit background model for 948,003 bp. Use segment r for 0 bp 2025-01-31 10:06:29,265 DEBUG chr19:8695251-9136251: Successfully fit background model for 428,586 bp. Use segment r for 0 bp 2025-01-31 10:06:29,454 DEBUG chr19:9136251-11010001: Successfully fit background model for 1,531,153 bp. Use segment r for 0 bp 2025-01-31 10:06:29,474 DEBUG chr18:3000500-7095751: Successfully fit background model for 3,613,563 bp. Use segment r for 0 bp 2025-01-31 10:06:29,525 DEBUG chr19:11010001-11712751: Successfully fit background model for 618,842 bp. Use segment r for 0 bp 2025-01-31 10:06:29,558 DEBUG chr19:11712751-12021751: Successfully fit background model for 295,963 bp. Use segment r for 0 bp 2025-01-31 10:06:29,887 DEBUG chr19:12021751-15496251: Successfully fit background model for 3,145,082 bp. Use segment r for 0 bp 2025-01-31 10:06:30,078 DEBUG chr19:15496251-17593751: Successfully fit background model for 2,014,063 bp. Use segment r for 0 bp 2025-01-31 10:06:30,456 DEBUG chr18:7095751-15663751: Successfully fit background model for 7,888,397 bp. Use segment r for 0 bp 2025-01-31 10:06:30,586 DEBUG chr19:17593751-22798251: Successfully fit background model for 4,838,019 bp. Use segment r for 0 bp 2025-01-31 10:06:30,779 DEBUG chr19:22798251-24893251: Successfully fit background model for 2,025,687 bp. Use segment r for 0 bp 2025-01-31 10:06:30,828 DEBUG chr18:15663751-19538251: Successfully fit background model for 3,461,200 bp. Use segment r for 0 bp 2025-01-31 10:06:31,090 DEBUG chr18:19538251-22068751: Successfully fit background model for 2,330,946 bp. Use segment r for 0 bp 2025-01-31 10:06:31,174 DEBUG chr19:24893251-29016251: Successfully fit background model for 3,935,694 bp. Use segment r for 0 bp 2025-01-31 10:06:31,255 DEBUG chr18:22068751-23795751: Successfully fit background model for 1,561,247 bp. Use segment r for 0 bp 2025-01-31 10:06:31,316 DEBUG chr19:29016251-30563751: Successfully fit background model for 1,489,426 bp. Use segment r for 0 bp 2025-01-31 10:06:31,396 DEBUG chr19:30563751-31396751: Successfully fit background model for 786,312 bp. Use segment r for 0 bp 2025-01-31 10:06:31,507 DEBUG chr18:23795751-26229501: Successfully fit background model for 2,305,353 bp. Use segment r for 0 bp 2025-01-31 10:06:31,541 DEBUG chr19:31396751-33036251: Successfully fit background model for 1,553,497 bp. Use segment r for 0 bp 2025-01-31 10:06:31,774 DEBUG chr19:33036251-35689251: Successfully fit background model for 2,338,488 bp. Use segment r for 0 bp 2025-01-31 10:06:31,972 DEBUG chr18:26229501-30959751: Successfully fit background model for 4,365,255 bp. Use segment r for 0 bp 2025-01-31 10:06:32,082 DEBUG chr19:35689251-39082251: Successfully fit background model for 3,255,934 bp. Use segment r for 0 bp 2025-01-31 10:06:32,168 DEBUG chr19:39082251-39959751: Successfully fit background model for 637,190 bp. Use segment r for 0 bp 2025-01-31 10:06:32,297 DEBUG chr18:30959751-34216751: Successfully fit background model for 3,006,069 bp. Use segment r for 0 bp 2025-01-31 10:06:32,435 DEBUG chr19:39959751-43043751: Successfully fit background model for 2,945,676 bp. Use segment r for 0 bp 2025-01-31 10:06:32,477 DEBUG chr19:43043751-43435251: Successfully fit background model for 355,982 bp. Use segment r for 0 bp 2025-01-31 10:06:32,552 DEBUG chr18:34216751-36803751: Successfully fit background model for 2,527,653 bp. Use segment r for 0 bp 2025-01-31 10:06:32,656 DEBUG chr18:36803751-37805751: Successfully fit background model for 870,867 bp. Use segment r for 0 bp 2025-01-31 10:06:32,826 DEBUG chr18:37805751-39508751: Successfully fit background model for 1,675,875 bp. Use segment r for 0 bp 2025-01-31 10:06:32,846 DEBUG chr19:43435251-47208251: Successfully fit background model for 3,667,292 bp. Use segment r for 0 bp 2025-01-31 10:06:32,973 DEBUG chr19:47208251-48636251: Successfully fit background model for 1,375,426 bp. Use segment r for 0 bp 2025-01-31 10:06:32,981 DEBUG chr18:39508751-41111251: Successfully fit background model for 1,486,168 bp. Use segment r for 0 bp 2025-01-31 10:06:33,307 DEBUG chr19:48636251-52520251: Successfully fit background model for 3,588,497 bp. Use segment r for 0 bp 2025-01-31 10:06:33,722 DEBUG chr18:41111251-48144751: Successfully fit background model for 6,475,432 bp. Use segment r for 0 bp 2025-01-31 10:06:33,815 DEBUG chr18:48144751-49007751: Successfully fit background model for 780,274 bp. Use segment r for 0 bp 2025-01-31 10:06:33,974 DEBUG chr18:49007751-50544751: Successfully fit background model for 1,405,761 bp. Use segment r for 0 bp 2025-01-31 10:06:34,113 DEBUG chr18:50544751-51939751: Successfully fit background model for 1,247,601 bp. Use segment r for 0 bp 2025-01-31 10:06:34,285 DEBUG chr19:52520251-61431566: Successfully fit background model for 8,452,668 bp. Use segment r for 0 bp 2025-01-31 10:06:35,116 DEBUG chr18:51939751-60468251: Successfully fit background model for 7,958,155 bp. Use segment r for 0 bp 2025-01-31 10:06:35,278 DEBUG chr18:60468251-61944251: Successfully fit background model for 1,448,742 bp. Use segment r for 0 bp 2025-01-31 10:06:35,792 DEBUG chr18:61944251-67197001: Successfully fit background model for 5,008,954 bp. Use segment r for 0 bp 2025-01-31 10:06:35,853 DEBUG chr18:67197001-67715251: Successfully fit background model for 507,724 bp. Use segment r for 0 bp 2025-01-31 10:06:36,194 DEBUG chr18:67715251-71349251: Successfully fit background model for 3,390,199 bp. Use segment r for 0 bp 2025-01-31 10:06:36,416 DEBUG chr18:71349251-73570251: Successfully fit background model for 2,055,797 bp. Use segment r for 0 bp 2025-01-31 10:06:36,868 DEBUG chr18:73570251-78079251: Successfully fit background model for 4,236,606 bp. Use segment r for 0 bp 2025-01-31 10:06:37,059 DEBUG chr18:78079251-80079751: Successfully fit background model for 1,859,713 bp. Use segment r for 0 bp 2025-01-31 10:06:37,109 DEBUG chr18:80079751-80546251: Successfully fit background model for 445,936 bp. Use segment r for 0 bp 2025-01-31 10:06:37,645 DEBUG chr18:80546251-85775751: Successfully fit background model for 4,908,184 bp. Use segment r for 0 bp 2025-01-31 10:06:38,094 DEBUG chr18:85775751-90702639: Successfully fit background model for 4,158,514 bp. Use segment r for 0 bp 2025-01-31 10:07:28,993 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:07:28,994 INFO Calculating per-bp p-values 2025-01-31 10:07:28,995 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:07:29,022 DEBUG chr1: Calculating p-values 2025-01-31 10:07:29,024 DEBUG chr3: Calculating p-values 2025-01-31 10:07:29,026 DEBUG chrX: Calculating p-values 2025-01-31 10:07:29,026 DEBUG chr2: Calculating p-values 2025-01-31 10:07:29,027 DEBUG chr4: Calculating p-values 2025-01-31 10:07:29,038 DEBUG chr5: Calculating p-values 2025-01-31 10:08:08,228 DEBUG Saving p-values for chrX 2025-01-31 10:08:10,744 DEBUG Saving p-values for chr3 2025-01-31 10:08:17,645 DEBUG Saving p-values for chr4 2025-01-31 10:08:18,066 DEBUG Saving p-values for chr5 2025-01-31 10:08:27,923 DEBUG Saving p-values for chr2 2025-01-31 10:08:32,820 DEBUG Saving p-values for chr1 2025-01-31 10:08:41,706 DEBUG chr6: Calculating p-values 2025-01-31 10:08:45,932 DEBUG chr7: Calculating p-values 2025-01-31 10:08:48,816 DEBUG chr10: Calculating p-values 2025-01-31 10:08:51,278 DEBUG chr8: Calculating p-values 2025-01-31 10:09:04,106 DEBUG chr14: Calculating p-values 2025-01-31 10:09:08,654 DEBUG chr9: Calculating p-values 2025-01-31 10:09:17,845 DEBUG Saving p-values for chr6 2025-01-31 10:09:23,808 DEBUG Saving p-values for chr10 2025-01-31 10:09:30,368 DEBUG Saving p-values for chr8 2025-01-31 10:09:30,543 DEBUG Saving p-values for chr7 2025-01-31 10:09:35,513 DEBUG Saving p-values for chr14 2025-01-31 10:09:46,384 DEBUG chr11: Calculating p-values 2025-01-31 10:09:46,453 DEBUG chr13: Calculating p-values 2025-01-31 10:09:49,988 DEBUG Saving p-values for chr9 2025-01-31 10:09:55,861 DEBUG chr12: Calculating p-values 2025-01-31 10:09:56,317 DEBUG chr15: Calculating p-values 2025-01-31 10:09:58,586 DEBUG chr16: Calculating p-values 2025-01-31 10:10:12,536 DEBUG chr17: Calculating p-values 2025-01-31 10:10:26,102 DEBUG Saving p-values for chr16 2025-01-31 10:10:26,505 DEBUG Saving p-values for chr12 2025-01-31 10:10:31,796 DEBUG Saving p-values for chr13 2025-01-31 10:10:33,630 DEBUG Saving p-values for chr15 2025-01-31 10:10:34,624 DEBUG Saving p-values for chr11 2025-01-31 10:10:42,458 DEBUG chrY: Calculating p-values 2025-01-31 10:10:44,929 DEBUG Saving p-values for chr17 2025-01-31 10:10:46,346 DEBUG chr18: Calculating p-values 2025-01-31 10:10:48,334 DEBUG chr19: Calculating p-values 2025-01-31 10:11:07,099 DEBUG Saving p-values for chr18 2025-01-31 10:11:08,255 DEBUG Saving p-values for chr19 2025-01-31 10:11:25,503 DEBUG Results of calc_pvals emitted. 2025-01-31 10:11:25,504 INFO Converting threshold values to bigwig 2025-01-31 10:11:25,504 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:11:42,015 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:12:12,240 INFO Converting background quantile values to bigwig 2025-01-31 10:12:12,240 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:12:51,629 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:13:19,905 INFO Calculating per-bp FDRs 2025-01-31 10:13:19,906 DEBUG AG81945: Extracting raw P-values 2025-01-31 10:13:59,761 DEBUG AG81945: Computing FDR 2025-01-31 10:14:17,991 DEBUG AG81945: Saving FDRs to parquet 2025-01-31 10:15:22,801 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:15:22,852 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:15:22,853 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:15:26,272 DEBUG chr5: Calling hotspots 2025-01-31 10:15:26,423 DEBUG chr3: Calling hotspots 2025-01-31 10:15:26,669 DEBUG chr4: Calling hotspots 2025-01-31 10:15:27,069 DEBUG chrX: Calling hotspots 2025-01-31 10:15:27,079 DEBUG chr2: Calling hotspots 2025-01-31 10:15:27,458 DEBUG chr1: Calling hotspots 2025-01-31 10:15:31,869 DEBUG chr5: 4833 hotspots called 2025-01-31 10:15:32,321 DEBUG chr3: 3731 hotspots called 2025-01-31 10:15:33,096 DEBUG chr4: 4883 hotspots called 2025-01-31 10:15:34,443 DEBUG chrX: 2247 hotspots called 2025-01-31 10:15:34,897 DEBUG chr2: 5923 hotspots called 2025-01-31 10:15:34,989 DEBUG chr6: Calling hotspots 2025-01-31 10:15:35,367 DEBUG chr7: Calling hotspots 2025-01-31 10:15:35,805 DEBUG chr1: 5044 hotspots called 2025-01-31 10:15:35,977 DEBUG chr10: Calling hotspots 2025-01-31 10:15:37,334 DEBUG chr8: Calling hotspots 2025-01-31 10:15:37,460 DEBUG chr14: Calling hotspots 2025-01-31 10:15:38,351 DEBUG chr9: Calling hotspots 2025-01-31 10:15:39,437 DEBUG chr6: 3834 hotspots called 2025-01-31 10:15:39,528 DEBUG chr7: 4913 hotspots called 2025-01-31 10:15:40,101 DEBUG chr10: 3595 hotspots called 2025-01-31 10:15:41,011 DEBUG chr14: 2475 hotspots called 2025-01-31 10:15:41,270 DEBUG chr8: 3625 hotspots called 2025-01-31 10:15:41,687 DEBUG chr13: Calling hotspots 2025-01-31 10:15:41,761 DEBUG chr9: 4141 hotspots called 2025-01-31 10:15:42,007 DEBUG chr11: Calling hotspots 2025-01-31 10:15:42,527 DEBUG chr12: Calling hotspots 2025-01-31 10:15:43,218 DEBUG chr16: Calling hotspots 2025-01-31 10:15:43,257 DEBUG chr15: Calling hotspots 2025-01-31 10:15:43,675 DEBUG chr17: Calling hotspots 2025-01-31 10:15:45,187 DEBUG chr13: 3635 hotspots called 2025-01-31 10:15:46,466 DEBUG chr11: 5704 hotspots called 2025-01-31 10:15:47,058 DEBUG chr12: 2898 hotspots called 2025-01-31 10:15:47,220 DEBUG chr18: Calling hotspots 2025-01-31 10:15:47,519 DEBUG chr16: 2478 hotspots called 2025-01-31 10:15:47,622 DEBUG chr19: Calling hotspots 2025-01-31 10:15:47,728 DEBUG chr17: 3343 hotspots called 2025-01-31 10:15:47,803 DEBUG chr15: 3264 hotspots called 2025-01-31 10:15:49,404 DEBUG chr19: 2380 hotspots called 2025-01-31 10:15:49,684 DEBUG chr18: 2057 hotspots called 2025-01-31 10:15:49,938 DEBUG Results of call_hotspots emitted. 2025-01-31 10:15:49,978 INFO There are 75003 hotspots called at FDR=0.05 2025-01-31 10:15:53,639 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:15:53,639 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:16:03,077 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:16:03,700 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:16:04,227 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:16:04,511 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:16:05,306 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:16:05,491 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:16:12,166 DEBUG chr5: 5686 peaks called 2025-01-31 10:16:13,306 DEBUG chr3: 4381 peaks called 2025-01-31 10:16:13,670 DEBUG chr4: 5666 peaks called 2025-01-31 10:16:13,988 DEBUG chrX: 2574 peaks called 2025-01-31 10:16:15,631 DEBUG chr1: 5779 peaks called 2025-01-31 10:16:15,656 DEBUG chr2: 6959 peaks called 2025-01-31 10:16:20,102 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:16:21,242 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:16:21,243 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:16:21,331 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:16:22,102 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:16:22,148 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:16:28,124 DEBUG chr6: 4463 peaks called 2025-01-31 10:16:28,538 DEBUG chr8: 4322 peaks called 2025-01-31 10:16:28,659 DEBUG chr10: 4206 peaks called 2025-01-31 10:16:28,875 DEBUG chr14: 2839 peaks called 2025-01-31 10:16:28,966 DEBUG chr9: 4882 peaks called 2025-01-31 10:16:29,056 DEBUG chr7: 5962 peaks called 2025-01-31 10:16:34,299 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:16:34,318 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:16:34,367 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:16:34,691 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:16:34,865 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:16:35,064 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:16:39,472 DEBUG chr17: 4075 peaks called 2025-01-31 10:16:39,482 DEBUG chr16: 2884 peaks called 2025-01-31 10:16:41,011 DEBUG chr11: 7016 peaks called 2025-01-31 10:16:41,054 DEBUG chr15: 3861 peaks called 2025-01-31 10:16:41,287 DEBUG chr13: 4280 peaks called 2025-01-31 10:16:41,371 DEBUG chr12: 3366 peaks called 2025-01-31 10:16:42,361 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:16:42,610 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:16:44,404 DEBUG chr19: 2905 peaks called 2025-01-31 10:16:44,809 DEBUG chr18: 2362 peaks called 2025-01-31 10:16:45,235 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:16:45,270 INFO There are 88468 peaks called at FDR=0.05 2025-01-31 10:16:46,807 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:16:46,808 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:16:50,309 DEBUG chr4: Calling hotspots 2025-01-31 10:16:50,357 DEBUG chr5: Calling hotspots 2025-01-31 10:16:50,541 DEBUG chr3: Calling hotspots 2025-01-31 10:16:50,991 DEBUG chr2: Calling hotspots 2025-01-31 10:16:51,004 DEBUG chrX: Calling hotspots 2025-01-31 10:16:51,149 DEBUG chr1: Calling hotspots 2025-01-31 10:16:55,104 DEBUG chr4: 3950 hotspots called 2025-01-31 10:16:55,178 DEBUG chr5: 3942 hotspots called 2025-01-31 10:16:55,745 DEBUG chr3: 2953 hotspots called 2025-01-31 10:16:56,554 DEBUG chrX: 1683 hotspots called 2025-01-31 10:16:57,041 DEBUG chr2: 4795 hotspots called 2025-01-31 10:16:57,278 DEBUG chr1: 3948 hotspots called 2025-01-31 10:16:57,729 DEBUG chr6: Calling hotspots 2025-01-31 10:16:58,192 DEBUG chr7: Calling hotspots 2025-01-31 10:16:58,262 DEBUG chr10: Calling hotspots 2025-01-31 10:16:59,280 DEBUG chr8: Calling hotspots 2025-01-31 10:16:59,349 DEBUG chr14: Calling hotspots 2025-01-31 10:16:59,554 DEBUG chr9: Calling hotspots 2025-01-31 10:17:01,500 DEBUG chr6: 3026 hotspots called 2025-01-31 10:17:02,144 DEBUG chr10: 2902 hotspots called 2025-01-31 10:17:02,677 DEBUG chr7: 4038 hotspots called 2025-01-31 10:17:03,133 DEBUG chr8: 2894 hotspots called 2025-01-31 10:17:03,224 DEBUG chr9: 3382 hotspots called 2025-01-31 10:17:03,304 DEBUG chr14: 1933 hotspots called 2025-01-31 10:17:03,811 DEBUG chr11: Calling hotspots 2025-01-31 10:17:04,285 DEBUG chr13: Calling hotspots 2025-01-31 10:17:04,813 DEBUG chr12: Calling hotspots 2025-01-31 10:17:04,877 DEBUG chr17: Calling hotspots 2025-01-31 10:17:04,917 DEBUG chr16: Calling hotspots 2025-01-31 10:17:04,959 DEBUG chr15: Calling hotspots 2025-01-31 10:17:07,115 DEBUG chr11: 4777 hotspots called 2025-01-31 10:17:07,513 DEBUG chr16: 1941 hotspots called 2025-01-31 10:17:07,573 DEBUG chr13: 2849 hotspots called 2025-01-31 10:17:07,658 DEBUG chr15: 2648 hotspots called 2025-01-31 10:17:07,670 DEBUG chr17: 2788 hotspots called 2025-01-31 10:17:07,984 DEBUG chr12: 2300 hotspots called 2025-01-31 10:17:08,254 DEBUG chr19: Calling hotspots 2025-01-31 10:17:08,357 DEBUG chr18: Calling hotspots 2025-01-31 10:17:09,628 DEBUG chr19: 1986 hotspots called 2025-01-31 10:17:10,228 DEBUG chr18: 1593 hotspots called 2025-01-31 10:17:10,402 DEBUG Results of call_hotspots emitted. 2025-01-31 10:17:10,431 INFO There are 60328 hotspots called at FDR=0.01 2025-01-31 10:17:13,115 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:17:13,115 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:17:21,706 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:17:21,709 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:17:22,132 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:17:22,148 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:17:22,987 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:17:23,722 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:17:30,631 DEBUG chr4: 4688 peaks called 2025-01-31 10:17:31,397 DEBUG chr3: 3555 peaks called 2025-01-31 10:17:31,456 DEBUG chr5: 4713 peaks called 2025-01-31 10:17:32,471 DEBUG chrX: 1997 peaks called 2025-01-31 10:17:33,831 DEBUG chr2: 5714 peaks called 2025-01-31 10:17:34,377 DEBUG chr1: 4680 peaks called 2025-01-31 10:17:38,622 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:17:38,624 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:17:38,755 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:17:39,045 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:17:40,205 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:17:40,545 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:17:44,272 DEBUG chr8: 3543 peaks called 2025-01-31 10:17:44,556 DEBUG chr10: 3450 peaks called 2025-01-31 10:17:45,048 DEBUG chr6: 3610 peaks called 2025-01-31 10:17:45,691 DEBUG chr7: 4970 peaks called 2025-01-31 10:17:45,922 DEBUG chr9: 4040 peaks called 2025-01-31 10:17:46,043 DEBUG chr14: 2278 peaks called 2025-01-31 10:17:50,039 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:17:50,077 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:17:51,007 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:17:51,056 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:17:51,191 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:17:51,293 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:17:54,370 DEBUG chr11: 5924 peaks called 2025-01-31 10:17:54,558 DEBUG chr17: 3457 peaks called 2025-01-31 10:17:54,756 DEBUG chr13: 3444 peaks called 2025-01-31 10:17:54,913 DEBUG chr16: 2317 peaks called 2025-01-31 10:17:55,226 DEBUG chr15: 3167 peaks called 2025-01-31 10:17:55,596 DEBUG chr12: 2722 peaks called 2025-01-31 10:17:56,808 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:17:57,029 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:17:58,480 DEBUG chr19: 2460 peaks called 2025-01-31 10:17:59,358 DEBUG chr18: 1876 peaks called 2025-01-31 10:17:59,704 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:17:59,736 INFO There are 72605 peaks called at FDR=0.01 2025-01-31 10:18:00,947 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:18:00,947 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:18:04,830 DEBUG chr4: Calling hotspots 2025-01-31 10:18:04,984 DEBUG chr5: Calling hotspots 2025-01-31 10:18:05,010 DEBUG chr3: Calling hotspots 2025-01-31 10:18:05,024 DEBUG chrX: Calling hotspots 2025-01-31 10:18:05,362 DEBUG chr2: Calling hotspots 2025-01-31 10:18:05,510 DEBUG chr1: Calling hotspots 2025-01-31 10:18:08,702 DEBUG chr5: 3393 hotspots called 2025-01-31 10:18:08,733 DEBUG chr4: 3410 hotspots called 2025-01-31 10:18:09,098 DEBUG chr3: 2460 hotspots called 2025-01-31 10:18:09,107 DEBUG chrX: 1452 hotspots called 2025-01-31 10:18:10,003 DEBUG chr2: 4099 hotspots called 2025-01-31 10:18:10,384 DEBUG chr1: 3287 hotspots called 2025-01-31 10:18:11,339 DEBUG chr7: Calling hotspots 2025-01-31 10:18:11,478 DEBUG chr8: Calling hotspots 2025-01-31 10:18:11,488 DEBUG chr10: Calling hotspots 2025-01-31 10:18:11,738 DEBUG chr6: Calling hotspots 2025-01-31 10:18:12,241 DEBUG chr14: Calling hotspots 2025-01-31 10:18:12,387 DEBUG chr9: Calling hotspots 2025-01-31 10:18:14,514 DEBUG chr8: 2524 hotspots called 2025-01-31 10:18:14,557 DEBUG chr10: 2444 hotspots called 2025-01-31 10:18:14,731 DEBUG chr7: 3477 hotspots called 2025-01-31 10:18:15,183 DEBUG chr14: 1625 hotspots called 2025-01-31 10:18:15,338 DEBUG chr6: 2561 hotspots called 2025-01-31 10:18:15,459 DEBUG chr9: 2882 hotspots called 2025-01-31 10:18:16,695 DEBUG chr13: Calling hotspots 2025-01-31 10:18:16,785 DEBUG chr11: Calling hotspots 2025-01-31 10:18:16,822 DEBUG chr12: Calling hotspots 2025-01-31 10:18:17,040 DEBUG chr15: Calling hotspots 2025-01-31 10:18:17,087 DEBUG chr17: Calling hotspots 2025-01-31 10:18:17,111 DEBUG chr16: Calling hotspots 2025-01-31 10:18:19,339 DEBUG chr17: 2383 hotspots called 2025-01-31 10:18:19,364 DEBUG chr15: 2212 hotspots called 2025-01-31 10:18:19,385 DEBUG chr16: 1631 hotspots called 2025-01-31 10:18:19,484 DEBUG chr13: 2377 hotspots called 2025-01-31 10:18:19,550 DEBUG chr12: 1938 hotspots called 2025-01-31 10:18:19,616 DEBUG chr11: 4158 hotspots called 2025-01-31 10:18:20,105 DEBUG chr19: Calling hotspots 2025-01-31 10:18:20,272 DEBUG chr18: Calling hotspots 2025-01-31 10:18:21,455 DEBUG chr19: 1732 hotspots called 2025-01-31 10:18:22,222 DEBUG chr18: 1333 hotspots called 2025-01-31 10:18:22,408 DEBUG Results of call_hotspots emitted. 2025-01-31 10:18:22,436 INFO There are 51378 hotspots called at FDR=0.001 2025-01-31 10:18:24,753 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:18:24,754 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:18:33,373 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:18:33,660 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:18:33,768 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:18:33,799 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:18:34,452 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:18:34,557 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:18:40,115 DEBUG chr5: 4018 peaks called 2025-01-31 10:18:40,808 DEBUG chr4: 4006 peaks called 2025-01-31 10:18:41,209 DEBUG chr3: 2977 peaks called 2025-01-31 10:18:41,292 DEBUG chrX: 1713 peaks called 2025-01-31 10:18:42,666 DEBUG chr2: 4864 peaks called 2025-01-31 10:18:43,082 DEBUG chr1: 3914 peaks called 2025-01-31 10:18:47,255 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:18:47,777 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:18:47,890 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:18:47,983 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:18:48,639 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:18:48,755 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:18:51,886 DEBUG chr8: 3075 peaks called 2025-01-31 10:18:52,055 DEBUG chr10: 2922 peaks called 2025-01-31 10:18:52,429 DEBUG chr6: 3034 peaks called 2025-01-31 10:18:52,816 DEBUG chr14: 1930 peaks called 2025-01-31 10:18:52,905 DEBUG chr7: 4275 peaks called 2025-01-31 10:18:52,908 DEBUG chr9: 3439 peaks called 2025-01-31 10:18:57,628 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:18:57,872 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:18:57,965 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:18:57,982 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:18:58,041 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:18:58,235 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:19:00,382 DEBUG chr17: 2936 peaks called 2025-01-31 10:19:00,719 DEBUG chr16: 1949 peaks called 2025-01-31 10:19:01,122 DEBUG chr15: 2634 peaks called 2025-01-31 10:19:01,508 DEBUG chr11: 5111 peaks called 2025-01-31 10:19:01,607 DEBUG chr13: 2882 peaks called 2025-01-31 10:19:01,662 DEBUG chr12: 2295 peaks called 2025-01-31 10:19:02,863 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:19:03,253 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:19:04,508 DEBUG chr19: 2138 peaks called 2025-01-31 10:19:05,605 DEBUG chr18: 1573 peaks called 2025-01-31 10:19:05,876 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:19:05,903 INFO There are 61685 peaks called at FDR=0.001 2025-01-31 10:19:06,959 INFO Saving density 2025-01-31 10:19:06,959 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:19:21,391 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:19:26,547 DEBUG Converting density to bigwig 2025-01-31 10:20:39,840 INFO Program finished