2025-01-31 09:31:53,921 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:53,925 INFO Extracting cutcounts from bam file 2025-01-31 09:34:19,383 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:34:19,440 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:34:19,443 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:34:19,443 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:34:19,444 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:34:19,444 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:34:19,445 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:34:24,086 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:34:24,243 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:34:24,274 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:34:24,277 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:34:24,417 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:34:24,466 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:34:25,379 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:34:25,479 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:34:25,509 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:34:25,629 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:34:25,838 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:34:25,918 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:34:26,545 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:34:26,637 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:34:26,792 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:34:27,508 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:34:27,508 INFO Total cutcounts = 24969122 2025-01-31 09:34:27,513 INFO Smoothing signal using MODWT 2025-01-31 09:34:27,515 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:34:27,559 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,563 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,563 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,565 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,565 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:27,580 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:49,511 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:50,034 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:51,412 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:53,590 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:30,399 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:50,403 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:40,742 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:40,905 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:49,904 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:54,333 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:09,735 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:48,015 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:21,609 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:23,804 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:25,073 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:42:41,953 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:42:41,953 INFO Estimating parameters of background model 2025-01-31 09:42:41,953 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:42:46,871 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:42:47,078 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:42:47,089 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:42:47,852 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:42:47,956 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:42:48,547 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:43:04,415 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:43:04,417 DEBUG chrX: Signal quantile: 0.995. signal threshold: 11. Best RMSEA: 0.031 2025-01-31 09:43:04,662 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:43:04,664 DEBUG chr3: Signal quantile: 0.994. signal threshold: 18. Best RMSEA: 0.020 2025-01-31 09:43:04,932 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:43:04,934 DEBUG chr5: Signal quantile: 0.992. signal threshold: 17. Best RMSEA: 0.018 2025-01-31 09:43:05,436 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:43:05,438 DEBUG chr4: Signal quantile: 0.991. signal threshold: 16. Best RMSEA: 0.018 2025-01-31 09:43:07,404 DEBUG chrX total SNP count: 246856 2025-01-31 09:43:07,404 DEBUG chrX length: 171031299 2025-01-31 09:43:07,404 DEBUG ----------------------------------------- 2025-01-31 09:43:07,404 INFO Processing SNPs in chrX 2025-01-31 09:43:07,471 DEBUG chr3 total SNP count: 271753 2025-01-31 09:43:07,471 DEBUG chr3 length: 160039680 2025-01-31 09:43:07,471 DEBUG ----------------------------------------- 2025-01-31 09:43:07,471 INFO Processing SNPs in chr3 2025-01-31 09:43:07,588 DEBUG chr5 total SNP count: 259057 2025-01-31 09:43:07,588 DEBUG chr5 length: 151834684 2025-01-31 09:43:07,588 DEBUG ----------------------------------------- 2025-01-31 09:43:07,588 INFO Processing SNPs in chr5 2025-01-31 09:43:07,742 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 271753)] 2025-01-31 09:43:07,787 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 33021), (33021, 33023), (33023, 33082), (33082, 176092), (176092, 176095), (176095, 246856)] 2025-01-31 09:43:07,841 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 259057)] 2025-01-31 09:43:07,905 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:07,928 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:08,016 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:08,081 DEBUG chr4 total SNP count: 262690 2025-01-31 09:43:08,082 DEBUG chr4 length: 156508116 2025-01-31 09:43:08,082 DEBUG ----------------------------------------- 2025-01-31 09:43:08,082 INFO Processing SNPs in chr4 2025-01-31 09:43:08,484 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 66462), (66462, 262690)] 2025-01-31 09:43:08,611 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:08,878 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:43:08,879 DEBUG chr2: Signal quantile: 0.992. signal threshold: 17. Best RMSEA: 0.018 2025-01-31 09:43:10,547 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:43:10,550 DEBUG chr1: Signal quantile: 0.993. signal threshold: 18. Best RMSEA: 0.017 2025-01-31 09:43:11,760 DEBUG Segmenting atomic regions: 2025-01-31 09:43:11,865 DEBUG chr2 total SNP count: 317091 2025-01-31 09:43:11,866 DEBUG chr2 length: 182113224 2025-01-31 09:43:11,866 DEBUG ----------------------------------------- 2025-01-31 09:43:11,866 INFO Processing SNPs in chr2 2025-01-31 09:43:11,873 DEBUG Processing 1/109 atomic regions from SNP 0 to 601 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,353 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 309202), (309202, 317091)] 2025-01-31 09:43:12,564 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:12,650 DEBUG Processing 2/109 atomic regions from SNP 301 to 902 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,858 DEBUG Processing 3/109 atomic regions from SNP 602 to 1203 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,069 DEBUG Processing 4/109 atomic regions from SNP 903 to 1504 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,274 DEBUG Processing 5/109 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,482 DEBUG Processing 6/109 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,691 DEBUG Processing 7/109 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,700 DEBUG chr1 total SNP count: 342234 2025-01-31 09:43:13,700 DEBUG chr1 length: 195471971 2025-01-31 09:43:13,700 DEBUG ----------------------------------------- 2025-01-31 09:43:13,700 INFO Processing SNPs in chr1 2025-01-31 09:43:13,909 DEBUG Processing 8/109 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:14,046 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 342234)] 2025-01-31 09:43:14,114 DEBUG Processing 9/109 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:14,275 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:14,321 DEBUG Processing 10/109 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:14,527 DEBUG Processing 11/109 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:14,746 DEBUG Processing 12/109 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:14,969 DEBUG Processing 13/109 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:15,202 DEBUG Processing 14/109 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:15,444 DEBUG Processing 15/109 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:15,688 DEBUG Processing 16/109 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:15,931 DEBUG Processing 17/109 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:16,172 DEBUG Processing 18/109 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:16,394 DEBUG Processing 19/109 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:16,440 DEBUG Segmenting atomic regions: 2025-01-31 09:43:16,553 DEBUG Processing 1/220 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,602 DEBUG Processing 20/109 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:16,816 DEBUG Processing 21/109 atomic regions from SNP 6020 to 6620 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:17,031 DEBUG Processing 22/109 atomic regions from SNP 6320 to 6920 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:17,247 DEBUG Processing 2/220 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,261 DEBUG Processing 23/109 atomic regions from SNP 6620 to 7220 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:17,464 DEBUG Processing 3/220 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,475 DEBUG Processing 24/109 atomic regions from SNP 6920 to 7520 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:17,679 DEBUG Processing 4/220 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,682 DEBUG Processing 25/109 atomic regions from SNP 7220 to 7820 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:17,892 DEBUG Processing 26/109 atomic regions from SNP 7520 to 8120 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:17,910 DEBUG Processing 5/220 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,101 DEBUG Processing 27/109 atomic regions from SNP 7820 to 8420 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:18,126 DEBUG Processing 6/220 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,312 DEBUG Processing 28/109 atomic regions from SNP 8120 to 8720 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:18,342 DEBUG Processing 7/220 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,522 DEBUG Processing 29/109 atomic regions from SNP 8420 to 9020 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:18,558 DEBUG Processing 8/220 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,733 DEBUG Processing 30/109 atomic regions from SNP 8720 to 9320 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:18,773 DEBUG Processing 9/220 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,976 DEBUG Processing 31/109 atomic regions from SNP 9020 to 9620 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:18,993 DEBUG Processing 10/220 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,192 DEBUG Processing 32/109 atomic regions from SNP 9320 to 9920 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:19,211 DEBUG Processing 11/220 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,404 DEBUG Processing 33/109 atomic regions from SNP 9620 to 10220 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:19,431 DEBUG Processing 12/220 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,614 DEBUG Processing 34/109 atomic regions from SNP 9920 to 10520 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:19,650 DEBUG Processing 13/220 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,826 DEBUG Processing 35/109 atomic regions from SNP 10220 to 10820 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:19,867 DEBUG Processing 14/220 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,041 DEBUG Processing 36/109 atomic regions from SNP 10520 to 11120 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:20,083 DEBUG Processing 15/220 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,257 DEBUG Processing 37/109 atomic regions from SNP 10820 to 11420 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:20,301 DEBUG Processing 16/220 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,483 DEBUG Processing 38/109 atomic regions from SNP 11120 to 11720 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:20,520 DEBUG Processing 17/220 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,723 DEBUG Processing 39/109 atomic regions from SNP 11420 to 12020 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:20,741 DEBUG Processing 18/220 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,959 DEBUG Processing 40/109 atomic regions from SNP 11720 to 12320 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:20,979 DEBUG Processing 19/220 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,189 DEBUG Processing 41/109 atomic regions from SNP 12020 to 12620 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:21,197 DEBUG Processing 20/220 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,417 DEBUG Processing 21/220 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,419 DEBUG Processing 42/109 atomic regions from SNP 12320 to 12920 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:21,639 DEBUG Processing 22/220 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,652 DEBUG Processing 43/109 atomic regions from SNP 12620 to 13220 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:21,856 DEBUG Processing 23/220 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,881 DEBUG Processing 44/109 atomic regions from SNP 12920 to 13520 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:22,073 DEBUG Processing 24/220 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,115 DEBUG Processing 45/109 atomic regions from SNP 13220 to 13820 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:22,289 DEBUG Processing 25/220 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,359 DEBUG Processing 46/109 atomic regions from SNP 13520 to 14120 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:22,503 DEBUG Processing 26/220 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,591 DEBUG Processing 47/109 atomic regions from SNP 13820 to 14420 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:22,717 DEBUG Processing 27/220 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,810 DEBUG Processing 48/109 atomic regions from SNP 14120 to 14720 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:22,932 DEBUG Processing 28/220 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,018 DEBUG Processing 49/109 atomic regions from SNP 14420 to 15020 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:23,147 DEBUG Processing 29/220 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,228 DEBUG Processing 50/109 atomic regions from SNP 14720 to 15320 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:23,363 DEBUG Processing 30/220 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,440 DEBUG Processing 51/109 atomic regions from SNP 15020 to 15620 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:23,583 DEBUG Processing 31/220 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,650 DEBUG Processing 52/109 atomic regions from SNP 15320 to 15920 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:23,820 DEBUG Processing 32/220 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,861 DEBUG Processing 53/109 atomic regions from SNP 15620 to 16220 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:24,036 DEBUG Processing 33/220 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,073 DEBUG Processing 54/109 atomic regions from SNP 15920 to 16520 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:24,253 DEBUG Processing 34/220 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,286 DEBUG Processing 55/109 atomic regions from SNP 16220 to 16820 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:24,474 DEBUG Processing 35/220 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,504 DEBUG Processing 56/109 atomic regions from SNP 16520 to 17120 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:24,694 DEBUG Processing 36/220 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,718 DEBUG Processing 57/109 atomic regions from SNP 16820 to 17420 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:24,912 DEBUG Processing 37/220 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,930 DEBUG Processing 58/109 atomic regions from SNP 17120 to 17720 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:25,139 DEBUG Processing 59/109 atomic regions from SNP 17420 to 18020 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:25,144 DEBUG Processing 38/220 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,351 DEBUG Processing 60/109 atomic regions from SNP 17720 to 18320 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:25,360 DEBUG Processing 39/220 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,558 DEBUG Processing 61/109 atomic regions from SNP 18020 to 18620 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:25,577 DEBUG Processing 40/220 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,767 DEBUG Processing 62/109 atomic regions from SNP 18320 to 18920 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:25,792 DEBUG Processing 41/220 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,983 DEBUG Processing 63/109 atomic regions from SNP 18620 to 19220 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:26,021 DEBUG Processing 42/220 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,196 DEBUG Processing 64/109 atomic regions from SNP 18920 to 19520 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:26,239 DEBUG Processing 43/220 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,400 DEBUG Processing 65/109 atomic regions from SNP 19220 to 19820 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:26,454 DEBUG Processing 44/220 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,604 DEBUG Processing 66/109 atomic regions from SNP 19520 to 20120 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:26,690 DEBUG Processing 45/220 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,811 DEBUG Processing 67/109 atomic regions from SNP 19820 to 20420 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:26,938 DEBUG Processing 46/220 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,018 DEBUG Processing 68/109 atomic regions from SNP 20120 to 20720 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:27,173 DEBUG Processing 47/220 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,225 DEBUG Processing 69/109 atomic regions from SNP 20420 to 21020 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:27,397 DEBUG Processing 48/220 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,438 DEBUG Processing 70/109 atomic regions from SNP 20720 to 21320 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:27,618 DEBUG Processing 49/220 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,650 DEBUG Processing 71/109 atomic regions from SNP 21020 to 21620 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:27,848 DEBUG Processing 50/220 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,864 DEBUG Processing 72/109 atomic regions from SNP 21320 to 21920 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:28,068 DEBUG Processing 51/220 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,077 DEBUG Processing 73/109 atomic regions from SNP 21620 to 22220 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:28,302 DEBUG Processing 74/109 atomic regions from SNP 21920 to 22520 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:28,304 DEBUG Processing 52/220 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,518 DEBUG Processing 75/109 atomic regions from SNP 22220 to 22820 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:28,529 DEBUG Processing 53/220 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,735 DEBUG Processing 76/109 atomic regions from SNP 22520 to 23120 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:28,754 DEBUG Processing 54/220 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,948 DEBUG Processing 77/109 atomic regions from SNP 22820 to 23420 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:28,977 DEBUG Processing 55/220 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,172 DEBUG Processing 78/109 atomic regions from SNP 23120 to 23720 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:29,212 DEBUG Processing 56/220 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,409 DEBUG Processing 79/109 atomic regions from SNP 23420 to 24020 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:29,457 DEBUG Processing 57/220 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,640 DEBUG Processing 80/109 atomic regions from SNP 23720 to 24320 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:29,701 DEBUG Processing 58/220 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,879 DEBUG Processing 81/109 atomic regions from SNP 24020 to 24620 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:29,959 DEBUG Processing 59/220 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,123 DEBUG Processing 82/109 atomic regions from SNP 24320 to 24920 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:30,218 DEBUG Processing 60/220 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,382 DEBUG Processing 83/109 atomic regions from SNP 24620 to 25220 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:30,481 DEBUG Processing 61/220 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,617 DEBUG Processing 84/109 atomic regions from SNP 24920 to 25520 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:30,743 DEBUG Processing 62/220 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,851 DEBUG Processing 85/109 atomic regions from SNP 25220 to 25820 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:30,980 DEBUG Processing 63/220 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,080 DEBUG Processing 86/109 atomic regions from SNP 25520 to 26120 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:31,213 DEBUG Processing 64/220 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,312 DEBUG Processing 87/109 atomic regions from SNP 25820 to 26420 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:31,450 DEBUG Processing 65/220 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,557 DEBUG Processing 88/109 atomic regions from SNP 26120 to 26720 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:31,678 DEBUG Processing 66/220 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,790 DEBUG Processing 89/109 atomic regions from SNP 26420 to 27020 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:31,906 DEBUG Processing 67/220 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,006 DEBUG Processing 90/109 atomic regions from SNP 26720 to 27320 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:32,137 DEBUG Processing 68/220 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,224 DEBUG Processing 91/109 atomic regions from SNP 27020 to 27620 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:32,366 DEBUG Processing 69/220 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,445 DEBUG Processing 92/109 atomic regions from SNP 27320 to 27920 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:32,595 DEBUG Processing 70/220 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,665 DEBUG Processing 93/109 atomic regions from SNP 27620 to 28220 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:32,825 DEBUG Processing 71/220 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,889 DEBUG Processing 94/109 atomic regions from SNP 27920 to 28520 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:33,056 DEBUG Processing 72/220 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,121 DEBUG Processing 95/109 atomic regions from SNP 28220 to 28820 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:33,290 DEBUG Processing 73/220 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,355 DEBUG Processing 96/109 atomic regions from SNP 28520 to 29120 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:33,532 DEBUG Processing 74/220 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,587 DEBUG Processing 97/109 atomic regions from SNP 28820 to 29420 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:33,789 DEBUG Processing 75/220 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,835 DEBUG Processing 98/109 atomic regions from SNP 29120 to 29720 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:34,034 DEBUG Processing 76/220 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,074 DEBUG Processing 99/109 atomic regions from SNP 29420 to 30020 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:34,285 DEBUG Processing 77/220 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,320 DEBUG Processing 100/109 atomic regions from SNP 29720 to 30320 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:34,528 DEBUG Processing 78/220 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,561 DEBUG Processing 101/109 atomic regions from SNP 30020 to 30620 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:34,770 DEBUG Processing 79/220 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,798 DEBUG Processing 102/109 atomic regions from SNP 30320 to 30920 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:35,005 DEBUG Processing 80/220 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,029 DEBUG Processing 103/109 atomic regions from SNP 30620 to 31220 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:35,243 DEBUG Processing 81/220 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,261 DEBUG Processing 104/109 atomic regions from SNP 30920 to 31520 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:35,491 DEBUG Processing 82/220 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,495 DEBUG Processing 105/109 atomic regions from SNP 31220 to 31820 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:35,733 DEBUG Processing 83/220 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,735 DEBUG Processing 106/109 atomic regions from SNP 31520 to 32120 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:35,969 DEBUG Processing 107/109 atomic regions from SNP 31820 to 32420 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:35,972 DEBUG Processing 84/220 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,203 DEBUG Processing 108/109 atomic regions from SNP 32120 to 32720 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:36,212 DEBUG Processing 85/220 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,430 DEBUG Processing 109/109 atomic regions from SNP 32420 to 33020 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:36,448 DEBUG Processing 86/220 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,551 DEBUG Unique SNPs positions in subchromosome 1: 33021 2025-01-31 09:43:36,593 DEBUG Subchromosome time: 28.687545333057642, subchromosome SNPs: 33021 2025-01-31 09:43:36,632 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:36,695 DEBUG Processing 87/220 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,959 DEBUG Processing 88/220 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,216 DEBUG Processing 89/220 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,555 DEBUG Processing 90/220 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,858 DEBUG Processing 91/220 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,193 DEBUG Processing 92/220 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,455 DEBUG Processing 93/220 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,735 DEBUG Processing 94/220 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,092 DEBUG Processing 95/220 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,175 DEBUG Segmenting atomic regions: 2025-01-31 09:43:39,294 DEBUG Processing 1/862 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,420 DEBUG Processing 96/220 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,837 DEBUG Processing 97/220 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,073 DEBUG Processing 2/862 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,233 DEBUG Processing 98/220 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,448 DEBUG Processing 3/862 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,636 DEBUG Processing 99/220 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,641 DEBUG Segmenting atomic regions: 2025-01-31 09:43:40,754 DEBUG Processing 4/862 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,769 DEBUG Processing 1/904 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,976 DEBUG Processing 100/220 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,157 DEBUG Processing 5/862 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,341 DEBUG Processing 101/220 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,553 DEBUG Processing 6/862 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,715 DEBUG Processing 102/220 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,721 DEBUG Processing 2/904 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,975 DEBUG Processing 7/862 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,148 DEBUG Processing 103/220 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,155 DEBUG Processing 3/904 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,373 DEBUG Processing 8/862 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,475 DEBUG Processing 4/904 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,543 DEBUG Processing 104/220 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,696 DEBUG Processing 9/862 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,832 DEBUG Processing 5/904 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,868 DEBUG Processing 105/220 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,003 DEBUG Processing 10/862 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,143 DEBUG Processing 6/904 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,190 DEBUG Processing 106/220 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,275 DEBUG Processing 11/862 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,447 DEBUG Processing 7/904 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,511 DEBUG Processing 107/220 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,577 DEBUG Processing 12/862 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,776 DEBUG Processing 8/904 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,798 DEBUG Processing 108/220 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,853 DEBUG Processing 13/862 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,056 DEBUG Processing 9/904 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,071 DEBUG Processing 109/220 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,116 DEBUG Processing 14/862 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,320 DEBUG Processing 10/904 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,329 DEBUG Processing 110/220 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,356 DEBUG Processing 15/862 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,587 DEBUG Processing 11/904 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,591 DEBUG Processing 111/220 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,634 DEBUG Processing 16/862 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,880 DEBUG Processing 112/220 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,887 DEBUG Processing 12/904 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,929 DEBUG Processing 17/862 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,176 DEBUG Processing 113/220 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,191 DEBUG Processing 13/904 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,219 DEBUG Processing 18/862 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,419 DEBUG Processing 114/220 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,444 DEBUG Processing 14/904 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,461 DEBUG Processing 19/862 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,659 DEBUG Processing 115/220 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,689 DEBUG Processing 15/904 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,701 DEBUG Processing 20/862 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,896 DEBUG Processing 116/220 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,949 DEBUG Processing 16/904 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,951 DEBUG Processing 21/862 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,167 DEBUG Processing 117/220 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,194 DEBUG Processing 22/862 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,201 DEBUG Processing 17/904 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,448 DEBUG Processing 118/220 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,476 DEBUG Processing 23/862 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,484 DEBUG Processing 18/904 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,690 DEBUG Processing 119/220 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,719 DEBUG Processing 24/862 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,734 DEBUG Processing 19/904 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,931 DEBUG Processing 120/220 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,957 DEBUG Processing 25/862 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,978 DEBUG Processing 20/904 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,166 DEBUG Processing 121/220 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,191 DEBUG Processing 26/862 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,217 DEBUG Processing 21/904 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,397 DEBUG Processing 122/220 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,418 DEBUG Processing 27/862 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,450 DEBUG Processing 22/904 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,632 DEBUG Processing 123/220 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,651 DEBUG Processing 28/862 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,684 DEBUG Processing 23/904 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,865 DEBUG Processing 124/220 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:47,880 DEBUG Processing 29/862 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,920 DEBUG Processing 24/904 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,100 DEBUG Processing 125/220 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,112 DEBUG Processing 30/862 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,156 DEBUG Processing 25/904 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,330 DEBUG Processing 126/220 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,338 DEBUG Processing 31/862 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,387 DEBUG Processing 26/904 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,560 DEBUG Processing 127/220 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,564 DEBUG Processing 32/862 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,614 DEBUG Processing 27/904 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,792 DEBUG Processing 128/220 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:48,796 DEBUG Processing 33/862 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,850 DEBUG Processing 28/904 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,023 DEBUG Processing 129/220 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,026 DEBUG Processing 34/862 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,083 DEBUG Processing 29/904 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,255 DEBUG Processing 35/862 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,257 DEBUG Processing 130/220 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,314 DEBUG Processing 30/904 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,483 DEBUG Processing 36/862 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,485 DEBUG Processing 131/220 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,543 DEBUG Processing 31/904 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,707 DEBUG Processing 37/862 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,712 DEBUG Processing 132/220 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:49,778 DEBUG Processing 32/904 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,931 DEBUG Processing 38/862 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,936 DEBUG Processing 133/220 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,025 DEBUG Processing 33/904 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,151 DEBUG Processing 39/862 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,162 DEBUG Processing 134/220 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,280 DEBUG Processing 34/904 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,371 DEBUG Processing 40/862 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,385 DEBUG Processing 135/220 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,516 DEBUG Processing 35/904 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,603 DEBUG Processing 41/862 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,615 DEBUG Processing 136/220 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,693 DEBUG Segmenting atomic regions: 2025-01-31 09:43:50,746 DEBUG Processing 36/904 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,831 DEBUG Processing 42/862 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,836 DEBUG Processing 1/1029 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,844 DEBUG Processing 137/220 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:50,976 DEBUG Processing 37/904 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,066 DEBUG Processing 43/862 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,082 DEBUG Processing 138/220 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,211 DEBUG Processing 38/904 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,305 DEBUG Processing 44/862 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,325 DEBUG Processing 139/220 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,444 DEBUG Processing 39/904 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,533 DEBUG Processing 45/862 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,563 DEBUG Processing 140/220 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,666 DEBUG Processing 2/1029 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,691 DEBUG Processing 40/904 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,779 DEBUG Processing 46/862 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,813 DEBUG Processing 141/220 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:51,951 DEBUG Processing 41/904 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,957 DEBUG Processing 3/1029 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,017 DEBUG Processing 47/862 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,051 DEBUG Processing 142/220 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,197 DEBUG Processing 42/904 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,216 DEBUG Processing 4/1029 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,252 DEBUG Processing 48/862 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,281 DEBUG Processing 143/220 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,441 DEBUG Processing 43/904 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,477 DEBUG Processing 5/1029 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,486 DEBUG Processing 49/862 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,517 DEBUG Processing 144/220 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,684 DEBUG Processing 44/904 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,726 DEBUG Processing 50/862 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,752 DEBUG Processing 6/1029 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,760 DEBUG Processing 145/220 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:52,938 DEBUG Processing 45/904 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,995 DEBUG Processing 51/862 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,043 DEBUG Processing 146/220 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,065 DEBUG Processing 7/1029 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,205 DEBUG Processing 46/904 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,249 DEBUG Processing 52/862 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,295 DEBUG Processing 147/220 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,344 DEBUG Processing 8/1029 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,456 DEBUG Processing 47/904 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,495 DEBUG Processing 53/862 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,546 DEBUG Processing 148/220 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,619 DEBUG Processing 9/1029 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,698 DEBUG Processing 48/904 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,735 DEBUG Processing 54/862 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,793 DEBUG Processing 149/220 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,911 DEBUG Processing 10/1029 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,980 DEBUG Processing 49/904 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,011 DEBUG Processing 55/862 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,087 DEBUG Processing 150/220 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,199 DEBUG Processing 11/1029 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,316 DEBUG Processing 50/904 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,343 DEBUG Processing 56/862 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,474 DEBUG Processing 151/220 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,614 DEBUG Processing 12/1029 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,638 DEBUG Processing 51/904 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,651 DEBUG Processing 57/862 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,732 DEBUG Processing 152/220 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,963 DEBUG Processing 13/1029 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,986 DEBUG Segmenting atomic regions: 2025-01-31 09:43:54,991 DEBUG Processing 52/904 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,997 DEBUG Processing 58/862 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,030 DEBUG Processing 153/220 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,099 DEBUG Processing 1/475 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,235 DEBUG Processing 14/1029 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,252 DEBUG Processing 59/862 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,252 DEBUG Processing 53/904 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,303 DEBUG Processing 154/220 atomic regions from SNP 46053 to 46654 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,354 DEBUG Processing 2/475 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,531 DEBUG Processing 15/1029 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,556 DEBUG Processing 54/904 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,572 DEBUG Processing 60/862 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,678 DEBUG Processing 155/220 atomic regions from SNP 46354 to 46955 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,686 DEBUG Processing 3/475 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,817 DEBUG Processing 16/1029 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,820 DEBUG Processing 55/904 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,828 DEBUG Processing 61/862 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,062 DEBUG Processing 156/220 atomic regions from SNP 46655 to 47256 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:56,074 DEBUG Processing 4/475 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:56,157 DEBUG Processing 56/904 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,168 DEBUG Processing 62/862 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,187 DEBUG Processing 17/1029 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,299 DEBUG Processing 157/220 atomic regions from SNP 46956 to 47557 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:56,314 DEBUG Processing 5/475 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:56,497 DEBUG Processing 57/904 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,529 DEBUG Processing 63/862 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,581 DEBUG Segmenting atomic regions: 2025-01-31 09:43:56,596 DEBUG Processing 18/1029 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,674 DEBUG Processing 158/220 atomic regions from SNP 47257 to 47858 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:56,678 DEBUG Processing 6/475 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:56,740 DEBUG Processing 1/1139 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,883 DEBUG Processing 58/904 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,964 DEBUG Processing 64/862 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,994 DEBUG Processing 159/220 atomic regions from SNP 47558 to 48159 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:57,001 DEBUG Processing 7/475 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,006 DEBUG Processing 19/1029 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,255 DEBUG Processing 59/904 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,377 DEBUG Processing 65/862 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,392 DEBUG Processing 8/475 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,394 DEBUG Processing 160/220 atomic regions from SNP 47859 to 48460 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:57,437 DEBUG Processing 20/1029 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,502 DEBUG Processing 60/904 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,638 DEBUG Processing 2/1139 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,660 DEBUG Processing 66/862 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,674 DEBUG Processing 161/220 atomic regions from SNP 48160 to 48761 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:57,682 DEBUG Processing 9/475 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,755 DEBUG Processing 61/904 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,755 DEBUG Processing 21/1029 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,007 DEBUG Processing 67/862 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,007 DEBUG Processing 3/1139 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,028 DEBUG Processing 162/220 atomic regions from SNP 48461 to 49061 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,046 DEBUG Processing 10/475 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:58,073 DEBUG Processing 62/904 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,134 DEBUG Processing 22/1029 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,288 DEBUG Processing 68/862 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,309 DEBUG Processing 163/220 atomic regions from SNP 48761 to 49361 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,321 DEBUG Processing 4/1139 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,339 DEBUG Processing 11/475 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:58,357 DEBUG Processing 63/904 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,442 DEBUG Processing 23/1029 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,622 DEBUG Processing 69/862 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,646 DEBUG Processing 164/220 atomic regions from SNP 49061 to 49661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,674 DEBUG Processing 12/475 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:58,674 DEBUG Processing 64/904 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,690 DEBUG Processing 5/1139 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,777 DEBUG Processing 24/1029 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,955 DEBUG Processing 165/220 atomic regions from SNP 49361 to 49961 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,980 DEBUG Processing 70/862 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,991 DEBUG Processing 65/904 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,996 DEBUG Processing 13/475 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,031 DEBUG Processing 6/1139 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,076 DEBUG Processing 25/1029 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,409 DEBUG Processing 71/862 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,411 DEBUG Processing 166/220 atomic regions from SNP 49661 to 50261 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,415 DEBUG Processing 66/904 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,445 DEBUG Processing 14/475 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,489 DEBUG Processing 7/1139 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,501 DEBUG Processing 26/1029 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,741 DEBUG Processing 72/862 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,773 DEBUG Processing 167/220 atomic regions from SNP 49961 to 50561 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,780 DEBUG Processing 67/904 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,788 DEBUG Processing 15/475 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,854 DEBUG Processing 27/1029 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,876 DEBUG Processing 8/1139 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,991 DEBUG Processing 73/862 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,026 DEBUG Processing 168/220 atomic regions from SNP 50261 to 50861 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,041 DEBUG Processing 68/904 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,051 DEBUG Processing 16/475 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,134 DEBUG Processing 28/1029 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,171 DEBUG Processing 9/1139 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,237 DEBUG Processing 74/862 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,271 DEBUG Processing 169/220 atomic regions from SNP 50561 to 51161 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,291 DEBUG Processing 69/904 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,302 DEBUG Processing 17/475 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,413 DEBUG Processing 29/1029 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,464 DEBUG Processing 10/1139 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,497 DEBUG Processing 75/862 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,560 DEBUG Processing 170/220 atomic regions from SNP 50861 to 51461 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,563 DEBUG Processing 70/904 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,586 DEBUG Processing 18/475 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,708 DEBUG Processing 30/1029 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,759 DEBUG Processing 76/862 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,769 DEBUG Processing 11/1139 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,829 DEBUG Processing 71/904 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,835 DEBUG Processing 19/475 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,836 DEBUG Processing 171/220 atomic regions from SNP 51161 to 51761 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,970 DEBUG Processing 31/1029 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,004 DEBUG Processing 77/862 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,050 DEBUG Processing 12/1139 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,083 DEBUG Processing 20/475 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,092 DEBUG Processing 72/904 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,116 DEBUG Processing 172/220 atomic regions from SNP 51461 to 52061 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,230 DEBUG Processing 32/1029 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,241 DEBUG Processing 78/862 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,327 DEBUG Processing 13/1139 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,333 DEBUG Processing 21/475 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,349 DEBUG Processing 73/904 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,372 DEBUG Processing 173/220 atomic regions from SNP 51761 to 52361 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,467 DEBUG Processing 79/862 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,483 DEBUG Processing 33/1029 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,580 DEBUG Processing 22/475 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,608 DEBUG Processing 74/904 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,614 DEBUG Processing 14/1139 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,624 DEBUG Processing 174/220 atomic regions from SNP 52061 to 52661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,703 DEBUG Processing 80/862 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,744 DEBUG Processing 34/1029 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,828 DEBUG Processing 23/475 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,868 DEBUG Processing 75/904 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,885 DEBUG Processing 175/220 atomic regions from SNP 52361 to 52961 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,909 DEBUG Processing 15/1139 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,935 DEBUG Processing 81/862 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,995 DEBUG Processing 35/1029 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,063 DEBUG Processing 24/475 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,123 DEBUG Processing 76/904 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,135 DEBUG Processing 176/220 atomic regions from SNP 52661 to 53261 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,183 DEBUG Processing 82/862 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,195 DEBUG Processing 16/1139 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,260 DEBUG Processing 36/1029 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,297 DEBUG Processing 25/475 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,363 DEBUG Processing 77/904 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,368 DEBUG Processing 177/220 atomic regions from SNP 52961 to 53561 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,417 DEBUG Processing 83/862 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,460 DEBUG Processing 17/1139 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,518 DEBUG Processing 37/1029 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,526 DEBUG Processing 26/475 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,602 DEBUG Processing 78/904 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,602 DEBUG Processing 178/220 atomic regions from SNP 53261 to 53861 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,646 DEBUG Processing 84/862 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,729 DEBUG Processing 18/1139 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,763 DEBUG Processing 27/475 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,782 DEBUG Processing 38/1029 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,838 DEBUG Processing 179/220 atomic regions from SNP 53561 to 54161 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,844 DEBUG Processing 79/904 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,874 DEBUG Processing 85/862 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,001 DEBUG Processing 19/1139 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,003 DEBUG Processing 28/475 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,052 DEBUG Processing 39/1029 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,080 DEBUG Processing 180/220 atomic regions from SNP 53861 to 54461 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,089 DEBUG Processing 80/904 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,104 DEBUG Processing 86/862 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,240 DEBUG Processing 29/475 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,276 DEBUG Processing 20/1139 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,319 DEBUG Processing 181/220 atomic regions from SNP 54161 to 54761 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,320 DEBUG Processing 40/1029 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,332 DEBUG Processing 81/904 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,336 DEBUG Processing 87/862 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,475 DEBUG Processing 30/475 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,553 DEBUG Processing 21/1139 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,567 DEBUG Processing 182/220 atomic regions from SNP 54461 to 55061 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,575 DEBUG Processing 88/862 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,579 DEBUG Processing 82/904 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,589 DEBUG Processing 41/1029 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,695 DEBUG Processing 31/475 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,809 DEBUG Processing 183/220 atomic regions from SNP 54761 to 55361 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,815 DEBUG Processing 89/862 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,827 DEBUG Processing 83/904 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,827 DEBUG Processing 22/1139 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,856 DEBUG Processing 42/1029 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,915 DEBUG Processing 32/475 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,049 DEBUG Processing 184/220 atomic regions from SNP 55061 to 55661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,059 DEBUG Processing 90/862 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,080 DEBUG Processing 84/904 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,109 DEBUG Processing 23/1139 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,133 DEBUG Processing 43/1029 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,151 DEBUG Processing 33/475 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,290 DEBUG Processing 185/220 atomic regions from SNP 55361 to 55961 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,298 DEBUG Processing 91/862 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,330 DEBUG Processing 85/904 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,387 DEBUG Processing 34/475 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,390 DEBUG Processing 24/1139 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,400 DEBUG Processing 44/1029 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,521 DEBUG Processing 186/220 atomic regions from SNP 55661 to 56261 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,528 DEBUG Processing 92/862 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,574 DEBUG Processing 86/904 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,627 DEBUG Processing 35/475 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,665 DEBUG Processing 45/1029 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,668 DEBUG Processing 25/1139 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,750 DEBUG Processing 187/220 atomic regions from SNP 55961 to 56561 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,774 DEBUG Processing 93/862 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,808 DEBUG Processing 87/904 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,861 DEBUG Processing 36/475 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,920 DEBUG Processing 46/1029 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,941 DEBUG Processing 26/1139 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,981 DEBUG Processing 188/220 atomic regions from SNP 56261 to 56861 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,026 DEBUG Processing 94/862 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,045 DEBUG Processing 88/904 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,097 DEBUG Processing 37/475 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,169 DEBUG Processing 47/1029 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,206 DEBUG Processing 27/1139 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,218 DEBUG Processing 189/220 atomic regions from SNP 56561 to 57161 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,262 DEBUG Processing 95/862 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,300 DEBUG Processing 89/904 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,318 DEBUG Processing 38/475 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,418 DEBUG Processing 48/1029 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,454 DEBUG Processing 190/220 atomic regions from SNP 56861 to 57461 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,477 DEBUG Processing 28/1139 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,506 DEBUG Processing 96/862 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,549 DEBUG Processing 39/475 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,565 DEBUG Processing 90/904 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,669 DEBUG Processing 49/1029 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,688 DEBUG Processing 191/220 atomic regions from SNP 57161 to 57761 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,750 DEBUG Processing 97/862 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,758 DEBUG Processing 29/1139 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,784 DEBUG Processing 40/475 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,804 DEBUG Processing 91/904 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,917 DEBUG Processing 50/1029 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,917 DEBUG Processing 192/220 atomic regions from SNP 57461 to 58061 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,004 DEBUG Processing 98/862 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,019 DEBUG Processing 41/475 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,037 DEBUG Processing 30/1139 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,071 DEBUG Processing 92/904 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,144 DEBUG Processing 193/220 atomic regions from SNP 57761 to 58361 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,168 DEBUG Processing 51/1029 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,248 DEBUG Processing 99/862 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,259 DEBUG Processing 42/475 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,312 DEBUG Processing 31/1139 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,325 DEBUG Processing 93/904 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,372 DEBUG Processing 194/220 atomic regions from SNP 58061 to 58661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,425 DEBUG Processing 52/1029 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,481 DEBUG Processing 100/862 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,489 DEBUG Processing 43/475 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,565 DEBUG Processing 94/904 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,581 DEBUG Processing 32/1139 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,602 DEBUG Processing 195/220 atomic regions from SNP 58361 to 58961 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,680 DEBUG Processing 53/1029 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,712 DEBUG Processing 101/862 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,720 DEBUG Processing 44/475 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,803 DEBUG Processing 95/904 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,833 DEBUG Processing 196/220 atomic regions from SNP 58661 to 59261 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,848 DEBUG Processing 33/1139 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,944 DEBUG Processing 54/1029 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,952 DEBUG Processing 102/862 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,957 DEBUG Processing 45/475 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,042 DEBUG Processing 96/904 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,062 DEBUG Processing 197/220 atomic regions from SNP 58961 to 59561 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,116 DEBUG Processing 34/1139 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,186 DEBUG Processing 103/862 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,189 DEBUG Processing 46/475 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,205 DEBUG Processing 55/1029 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,279 DEBUG Processing 97/904 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,291 DEBUG Processing 198/220 atomic regions from SNP 59261 to 59861 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,386 DEBUG Processing 35/1139 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,426 DEBUG Processing 104/862 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,428 DEBUG Processing 47/475 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,471 DEBUG Processing 56/1029 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,522 DEBUG Processing 98/904 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,526 DEBUG Processing 199/220 atomic regions from SNP 59561 to 60161 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,666 DEBUG Processing 36/1139 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,670 DEBUG Processing 105/862 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,670 DEBUG Processing 48/475 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,737 DEBUG Processing 57/1029 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,756 DEBUG Processing 200/220 atomic regions from SNP 59861 to 60461 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,761 DEBUG Processing 99/904 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,908 DEBUG Processing 49/475 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,911 DEBUG Processing 106/862 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,970 DEBUG Processing 37/1139 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,989 DEBUG Processing 201/220 atomic regions from SNP 60161 to 60761 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,998 DEBUG Processing 58/1029 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,998 DEBUG Processing 100/904 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,148 DEBUG Processing 50/475 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,154 DEBUG Processing 107/862 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,224 DEBUG Processing 202/220 atomic regions from SNP 60461 to 61061 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,241 DEBUG Processing 101/904 atomic regions from SNP 30100 to 30701 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,257 DEBUG Processing 59/1029 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,277 DEBUG Processing 38/1139 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,381 DEBUG Processing 51/475 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,420 DEBUG Processing 108/862 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,463 DEBUG Processing 203/220 atomic regions from SNP 60761 to 61361 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,485 DEBUG Processing 102/904 atomic regions from SNP 30401 to 31002 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,518 DEBUG Processing 60/1029 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,573 DEBUG Processing 39/1139 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,617 DEBUG Processing 52/475 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,674 DEBUG Processing 109/862 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,705 DEBUG Processing 204/220 atomic regions from SNP 61061 to 61661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,726 DEBUG Processing 103/904 atomic regions from SNP 30702 to 31303 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,772 DEBUG Processing 61/1029 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,842 DEBUG Processing 53/475 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,852 DEBUG Processing 40/1139 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,924 DEBUG Processing 110/862 atomic regions from SNP 32809 to 33410 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,939 DEBUG Processing 205/220 atomic regions from SNP 61361 to 61961 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,967 DEBUG Processing 104/904 atomic regions from SNP 31003 to 31604 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,031 DEBUG Processing 62/1029 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,080 DEBUG Processing 54/475 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,128 DEBUG Processing 41/1139 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,178 DEBUG Processing 206/220 atomic regions from SNP 61661 to 62261 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,181 DEBUG Processing 111/862 atomic regions from SNP 33110 to 33711 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,210 DEBUG Processing 105/904 atomic regions from SNP 31304 to 31905 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,296 DEBUG Processing 63/1029 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,314 DEBUG Processing 55/475 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,396 DEBUG Processing 42/1139 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,407 DEBUG Processing 112/862 atomic regions from SNP 33411 to 34012 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,407 DEBUG Processing 207/220 atomic regions from SNP 61961 to 62561 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,459 DEBUG Processing 106/904 atomic regions from SNP 31605 to 32206 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,548 DEBUG Processing 56/475 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,559 DEBUG Processing 64/1029 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,636 DEBUG Processing 208/220 atomic regions from SNP 62261 to 62861 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,643 DEBUG Processing 113/862 atomic regions from SNP 33712 to 34313 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,659 DEBUG Processing 43/1139 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,698 DEBUG Processing 107/904 atomic regions from SNP 31906 to 32507 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,785 DEBUG Processing 57/475 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,825 DEBUG Processing 65/1029 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,868 DEBUG Processing 209/220 atomic regions from SNP 62561 to 63161 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,907 DEBUG Processing 114/862 atomic regions from SNP 34013 to 34614 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,927 DEBUG Processing 44/1139 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,935 DEBUG Processing 108/904 atomic regions from SNP 32207 to 32808 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,016 DEBUG Processing 58/475 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,086 DEBUG Processing 66/1029 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,104 DEBUG Processing 210/220 atomic regions from SNP 62861 to 63461 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,171 DEBUG Processing 109/904 atomic regions from SNP 32508 to 33109 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,174 DEBUG Processing 115/862 atomic regions from SNP 34314 to 34915 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,196 DEBUG Processing 45/1139 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,240 DEBUG Processing 59/475 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,339 DEBUG Processing 211/220 atomic regions from SNP 63161 to 63761 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,357 DEBUG Processing 67/1029 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,416 DEBUG Processing 110/904 atomic regions from SNP 32809 to 33410 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,440 DEBUG Processing 116/862 atomic regions from SNP 34615 to 35216 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,466 DEBUG Processing 46/1139 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,468 DEBUG Processing 60/475 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,586 DEBUG Processing 212/220 atomic regions from SNP 63461 to 64061 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,616 DEBUG Processing 68/1029 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,664 DEBUG Processing 111/904 atomic regions from SNP 33110 to 33711 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,706 DEBUG Processing 61/475 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,717 DEBUG Processing 117/862 atomic regions from SNP 34916 to 35517 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,745 DEBUG Processing 47/1139 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,848 DEBUG Processing 213/220 atomic regions from SNP 63761 to 64361 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,875 DEBUG Processing 69/1029 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,913 DEBUG Processing 112/904 atomic regions from SNP 33411 to 34012 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,943 DEBUG Processing 62/475 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,981 DEBUG Processing 118/862 atomic regions from SNP 35217 to 35818 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,012 DEBUG Processing 48/1139 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,074 DEBUG Processing 214/220 atomic regions from SNP 64061 to 64661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,133 DEBUG Processing 70/1029 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,157 DEBUG Processing 113/904 atomic regions from SNP 33712 to 34313 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,176 DEBUG Processing 63/475 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,215 DEBUG Processing 119/862 atomic regions from SNP 35518 to 36119 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,274 DEBUG Processing 49/1139 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,306 DEBUG Processing 215/220 atomic regions from SNP 64361 to 64961 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,392 DEBUG Processing 71/1029 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,401 DEBUG Processing 114/904 atomic regions from SNP 34013 to 34614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,410 DEBUG Processing 64/475 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,453 DEBUG Processing 120/862 atomic regions from SNP 35819 to 36420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,539 DEBUG Processing 50/1139 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,559 DEBUG Processing 216/220 atomic regions from SNP 64661 to 65261 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,642 DEBUG Processing 115/904 atomic regions from SNP 34314 to 34915 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,642 DEBUG Processing 65/475 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,653 DEBUG Processing 72/1029 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,715 DEBUG Processing 121/862 atomic regions from SNP 36120 to 36721 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,807 DEBUG Processing 51/1139 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,823 DEBUG Processing 217/220 atomic regions from SNP 64961 to 65561 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,871 DEBUG Processing 66/475 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,881 DEBUG Processing 116/904 atomic regions from SNP 34615 to 35216 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,912 DEBUG Processing 73/1029 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,953 DEBUG Processing 122/862 atomic regions from SNP 36421 to 37022 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,076 DEBUG Processing 52/1139 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,088 DEBUG Processing 218/220 atomic regions from SNP 65261 to 65861 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,102 DEBUG Processing 67/475 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,121 DEBUG Processing 117/904 atomic regions from SNP 34916 to 35517 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,167 DEBUG Processing 74/1029 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,181 DEBUG Processing 123/862 atomic regions from SNP 36722 to 37323 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,331 DEBUG Processing 68/475 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,338 DEBUG Processing 219/220 atomic regions from SNP 65561 to 66161 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,347 DEBUG Processing 53/1139 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,364 DEBUG Processing 118/904 atomic regions from SNP 35217 to 35818 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,410 DEBUG Processing 124/862 atomic regions from SNP 37023 to 37624 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,423 DEBUG Processing 75/1029 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,562 DEBUG Processing 69/475 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,587 DEBUG Processing 220/220 atomic regions from SNP 65861 to 66461 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,608 DEBUG Processing 119/904 atomic regions from SNP 35518 to 36119 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,620 DEBUG Processing 54/1139 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,642 DEBUG Processing 125/862 atomic regions from SNP 37324 to 37925 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,688 DEBUG Processing 76/1029 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,728 DEBUG Unique SNPs positions in subchromosome 1: 66462 2025-01-31 09:44:12,804 DEBUG Processing 70/475 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,846 DEBUG Processing 120/904 atomic regions from SNP 35819 to 36420 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,877 DEBUG Processing 126/862 atomic regions from SNP 37625 to 38226 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,889 DEBUG Processing 55/1139 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,918 DEBUG Subchromosome time: 64.30698265705723, subchromosome SNPs: 66462 2025-01-31 09:44:12,948 DEBUG Processing 77/1029 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,969 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:13,045 DEBUG Processing 71/475 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,080 DEBUG Processing 121/904 atomic regions from SNP 36120 to 36721 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,110 DEBUG Processing 127/862 atomic regions from SNP 37926 to 38527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,160 DEBUG Processing 56/1139 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,202 DEBUG Processing 78/1029 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,296 DEBUG Processing 72/475 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,316 DEBUG Processing 122/904 atomic regions from SNP 36421 to 37022 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,340 DEBUG Processing 128/862 atomic regions from SNP 38227 to 38828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,427 DEBUG Processing 57/1139 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,456 DEBUG Processing 79/1029 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,540 DEBUG Processing 73/475 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,553 DEBUG Processing 123/904 atomic regions from SNP 36722 to 37323 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,569 DEBUG Processing 129/862 atomic regions from SNP 38528 to 39129 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,690 DEBUG Processing 58/1139 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,707 DEBUG Processing 80/1029 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,774 DEBUG Processing 74/475 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,794 DEBUG Processing 124/904 atomic regions from SNP 37023 to 37624 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,803 DEBUG Processing 130/862 atomic regions from SNP 38829 to 39430 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,959 DEBUG Processing 59/1139 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,961 DEBUG Processing 81/1029 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,007 DEBUG Processing 75/475 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,039 DEBUG Processing 131/862 atomic regions from SNP 39130 to 39731 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,040 DEBUG Processing 125/904 atomic regions from SNP 37324 to 37925 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,217 DEBUG Processing 82/1029 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,230 DEBUG Processing 60/1139 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,245 DEBUG Processing 76/475 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,277 DEBUG Processing 132/862 atomic regions from SNP 39431 to 40032 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,285 DEBUG Processing 126/904 atomic regions from SNP 37625 to 38226 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,477 DEBUG Processing 83/1029 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,482 DEBUG Processing 77/475 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,505 DEBUG Processing 61/1139 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,519 DEBUG Processing 133/862 atomic regions from SNP 39732 to 40333 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,534 DEBUG Processing 127/904 atomic regions from SNP 37926 to 38527 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,715 DEBUG Processing 78/475 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,737 DEBUG Processing 84/1029 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,760 DEBUG Processing 134/862 atomic regions from SNP 40033 to 40634 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,780 DEBUG Processing 128/904 atomic regions from SNP 38227 to 38828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,784 DEBUG Processing 62/1139 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,939 DEBUG Processing 79/475 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,001 DEBUG Processing 85/1029 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,013 DEBUG Processing 135/862 atomic regions from SNP 40334 to 40935 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,026 DEBUG Processing 129/904 atomic regions from SNP 38528 to 39129 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,059 DEBUG Processing 63/1139 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,161 DEBUG Processing 80/475 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,261 DEBUG Processing 86/1029 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,262 DEBUG Processing 136/862 atomic regions from SNP 40635 to 41236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,268 DEBUG Processing 130/904 atomic regions from SNP 38829 to 39430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,326 DEBUG Processing 64/1139 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,382 DEBUG Processing 81/475 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,494 DEBUG Processing 137/862 atomic regions from SNP 40936 to 41537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,506 DEBUG Processing 131/904 atomic regions from SNP 39130 to 39731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,519 DEBUG Processing 87/1029 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,591 DEBUG Processing 65/1139 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,603 DEBUG Processing 82/475 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,724 DEBUG Processing 138/862 atomic regions from SNP 41237 to 41838 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,743 DEBUG Processing 132/904 atomic regions from SNP 39431 to 40032 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,774 DEBUG Processing 88/1029 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,826 DEBUG Processing 83/475 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,852 DEBUG Processing 66/1139 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,957 DEBUG Processing 139/862 atomic regions from SNP 41538 to 42139 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,982 DEBUG Processing 133/904 atomic regions from SNP 39732 to 40333 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,048 DEBUG Processing 89/1029 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,073 DEBUG Processing 84/475 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,114 DEBUG Processing 67/1139 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,187 DEBUG Processing 140/862 atomic regions from SNP 41839 to 42440 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,218 DEBUG Processing 134/904 atomic regions from SNP 40033 to 40634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,317 DEBUG Processing 85/475 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,320 DEBUG Processing 90/1029 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,375 DEBUG Processing 68/1139 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,418 DEBUG Processing 141/862 atomic regions from SNP 42140 to 42741 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,455 DEBUG Processing 135/904 atomic regions from SNP 40334 to 40935 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,542 DEBUG Processing 86/475 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,575 DEBUG Processing 91/1029 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,639 DEBUG Processing 69/1139 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,647 DEBUG Processing 142/862 atomic regions from SNP 42441 to 43042 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,696 DEBUG Processing 136/904 atomic regions from SNP 40635 to 41236 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,773 DEBUG Processing 87/475 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,834 DEBUG Processing 92/1029 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,880 DEBUG Processing 143/862 atomic regions from SNP 42742 to 43343 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,909 DEBUG Processing 70/1139 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,934 DEBUG Processing 137/904 atomic regions from SNP 40936 to 41537 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,000 DEBUG Processing 88/475 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,114 DEBUG Processing 93/1029 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,115 DEBUG Processing 144/862 atomic regions from SNP 43043 to 43644 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,174 DEBUG Processing 138/904 atomic regions from SNP 41237 to 41838 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,179 DEBUG Processing 71/1139 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,226 DEBUG Processing 89/475 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,345 DEBUG Processing 145/862 atomic regions from SNP 43344 to 43945 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,382 DEBUG Processing 94/1029 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,413 DEBUG Processing 139/904 atomic regions from SNP 41538 to 42139 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,447 DEBUG Processing 72/1139 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,449 DEBUG Processing 90/475 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,576 DEBUG Processing 146/862 atomic regions from SNP 43645 to 44246 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,652 DEBUG Processing 140/904 atomic regions from SNP 41839 to 42440 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,662 DEBUG Processing 95/1029 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,674 DEBUG Processing 91/475 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,712 DEBUG Processing 73/1139 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,809 DEBUG Processing 147/862 atomic regions from SNP 43946 to 44547 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,896 DEBUG Processing 141/904 atomic regions from SNP 42140 to 42741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,902 DEBUG Processing 92/475 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,924 DEBUG Processing 96/1029 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,976 DEBUG Processing 74/1139 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,051 DEBUG Processing 148/862 atomic regions from SNP 44247 to 44848 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,138 DEBUG Processing 93/475 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,160 DEBUG Processing 142/904 atomic regions from SNP 42441 to 43042 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,181 DEBUG Processing 97/1029 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,242 DEBUG Processing 75/1139 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,301 DEBUG Processing 149/862 atomic regions from SNP 44548 to 45149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,367 DEBUG Processing 94/475 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,398 DEBUG Processing 143/904 atomic regions from SNP 42742 to 43343 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,433 DEBUG Processing 98/1029 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,506 DEBUG Processing 76/1139 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,557 DEBUG Processing 150/862 atomic regions from SNP 44849 to 45450 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,594 DEBUG Processing 95/475 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,651 DEBUG Processing 144/904 atomic regions from SNP 43043 to 43644 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,684 DEBUG Processing 99/1029 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,774 DEBUG Processing 77/1139 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,813 DEBUG Processing 151/862 atomic regions from SNP 45150 to 45751 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,821 DEBUG Processing 96/475 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,883 DEBUG Processing 145/904 atomic regions from SNP 43344 to 43945 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,932 DEBUG Processing 100/1029 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,041 DEBUG Processing 78/1139 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,052 DEBUG Processing 97/475 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,075 DEBUG Processing 152/862 atomic regions from SNP 45451 to 46052 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,117 DEBUG Processing 146/904 atomic regions from SNP 43645 to 44246 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,183 DEBUG Processing 101/1029 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,284 DEBUG Processing 98/475 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,312 DEBUG Processing 79/1139 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,345 DEBUG Processing 153/862 atomic regions from SNP 45752 to 46353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,357 DEBUG Processing 147/904 atomic regions from SNP 43946 to 44547 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,437 DEBUG Processing 102/1029 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,515 DEBUG Processing 99/475 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,577 DEBUG Processing 80/1139 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,597 DEBUG Processing 148/904 atomic regions from SNP 44247 to 44848 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,612 DEBUG Processing 154/862 atomic regions from SNP 46053 to 46654 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,692 DEBUG Processing 103/1029 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,743 DEBUG Processing 100/475 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,835 DEBUG Processing 149/904 atomic regions from SNP 44548 to 45149 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,840 DEBUG Processing 81/1139 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,864 DEBUG Processing 155/862 atomic regions from SNP 46354 to 46955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,949 DEBUG Processing 104/1029 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,977 DEBUG Processing 101/475 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,070 DEBUG Processing 150/904 atomic regions from SNP 44849 to 45450 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,097 DEBUG Processing 156/862 atomic regions from SNP 46655 to 47256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,107 DEBUG Processing 82/1139 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,203 DEBUG Processing 102/475 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,206 DEBUG Processing 105/1029 atomic regions from SNP 31304 to 31905 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,304 DEBUG Processing 151/904 atomic regions from SNP 45150 to 45751 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,328 DEBUG Processing 157/862 atomic regions from SNP 46956 to 47556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,373 DEBUG Processing 83/1139 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,431 DEBUG Processing 103/475 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,463 DEBUG Processing 106/1029 atomic regions from SNP 31605 to 32206 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,540 DEBUG Processing 152/904 atomic regions from SNP 45451 to 46052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,557 DEBUG Processing 158/862 atomic regions from SNP 47256 to 47856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,641 DEBUG Processing 84/1139 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,655 DEBUG Processing 104/475 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,752 DEBUG Processing 107/1029 atomic regions from SNP 31906 to 32507 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,781 DEBUG Processing 153/904 atomic regions from SNP 45752 to 46353 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,791 DEBUG Processing 159/862 atomic regions from SNP 47556 to 48156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,876 DEBUG Processing 105/475 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,905 DEBUG Processing 85/1139 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,014 DEBUG Processing 108/1029 atomic regions from SNP 32207 to 32808 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,021 DEBUG Processing 154/904 atomic regions from SNP 46053 to 46654 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,049 DEBUG Processing 160/862 atomic regions from SNP 47856 to 48456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,097 DEBUG Processing 106/475 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,165 DEBUG Processing 86/1139 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,278 DEBUG Processing 109/1029 atomic regions from SNP 32508 to 33109 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,284 DEBUG Processing 161/862 atomic regions from SNP 48156 to 48756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,289 DEBUG Processing 155/904 atomic regions from SNP 46354 to 46955 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,319 DEBUG Processing 107/475 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,424 DEBUG Processing 87/1139 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,520 DEBUG Processing 162/862 atomic regions from SNP 48456 to 49056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,541 DEBUG Processing 110/1029 atomic regions from SNP 32809 to 33410 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,546 DEBUG Processing 156/904 atomic regions from SNP 46655 to 47256 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,551 DEBUG Processing 108/475 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,686 DEBUG Processing 88/1139 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,759 DEBUG Processing 163/862 atomic regions from SNP 48756 to 49356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,794 DEBUG Processing 109/475 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,802 DEBUG Processing 157/904 atomic regions from SNP 46956 to 47557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,810 DEBUG Processing 111/1029 atomic regions from SNP 33110 to 33711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,953 DEBUG Processing 89/1139 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,012 DEBUG Processing 164/862 atomic regions from SNP 49056 to 49656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,041 DEBUG Processing 110/475 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,058 DEBUG Processing 158/904 atomic regions from SNP 47257 to 47858 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,070 DEBUG Processing 112/1029 atomic regions from SNP 33411 to 34012 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,213 DEBUG Processing 90/1139 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,265 DEBUG Processing 165/862 atomic regions from SNP 49356 to 49956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,273 DEBUG Processing 111/475 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,297 DEBUG Processing 159/904 atomic regions from SNP 47558 to 48159 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,330 DEBUG Processing 113/1029 atomic regions from SNP 33712 to 34313 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,475 DEBUG Processing 91/1139 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,503 DEBUG Processing 112/475 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,507 DEBUG Processing 166/862 atomic regions from SNP 49656 to 50256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,536 DEBUG Processing 160/904 atomic regions from SNP 47859 to 48460 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,595 DEBUG Processing 114/1029 atomic regions from SNP 34013 to 34614 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,732 DEBUG Processing 113/475 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,741 DEBUG Processing 92/1139 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,760 DEBUG Processing 167/862 atomic regions from SNP 49956 to 50556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,781 DEBUG Processing 161/904 atomic regions from SNP 48160 to 48761 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,863 DEBUG Processing 115/1029 atomic regions from SNP 34314 to 34915 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,956 DEBUG Processing 114/475 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,001 DEBUG Processing 93/1139 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,002 DEBUG Processing 168/862 atomic regions from SNP 50256 to 50856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,015 DEBUG Processing 162/904 atomic regions from SNP 48461 to 49062 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,115 DEBUG Processing 116/1029 atomic regions from SNP 34615 to 35216 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,182 DEBUG Processing 115/475 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,252 DEBUG Processing 163/904 atomic regions from SNP 48762 to 49363 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,260 DEBUG Processing 169/862 atomic regions from SNP 50556 to 51156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,268 DEBUG Processing 94/1139 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,364 DEBUG Processing 117/1029 atomic regions from SNP 34916 to 35517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,410 DEBUG Processing 116/475 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,494 DEBUG Processing 164/904 atomic regions from SNP 49063 to 49664 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,515 DEBUG Processing 170/862 atomic regions from SNP 50856 to 51456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,542 DEBUG Processing 95/1139 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,618 DEBUG Processing 118/1029 atomic regions from SNP 35217 to 35818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,635 DEBUG Processing 117/475 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,741 DEBUG Processing 165/904 atomic regions from SNP 49364 to 49965 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,752 DEBUG Processing 171/862 atomic regions from SNP 51156 to 51756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,810 DEBUG Processing 96/1139 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,854 DEBUG Processing 118/475 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,869 DEBUG Processing 119/1029 atomic regions from SNP 35518 to 36119 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,992 DEBUG Processing 166/904 atomic regions from SNP 49665 to 50266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,007 DEBUG Processing 172/862 atomic regions from SNP 51456 to 52056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,074 DEBUG Processing 119/475 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,079 DEBUG Processing 97/1139 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,116 DEBUG Processing 120/1029 atomic regions from SNP 35819 to 36420 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,248 DEBUG Processing 167/904 atomic regions from SNP 49966 to 50567 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,270 DEBUG Processing 173/862 atomic regions from SNP 51756 to 52356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,298 DEBUG Processing 120/475 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,345 DEBUG Processing 98/1139 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,366 DEBUG Processing 121/1029 atomic regions from SNP 36120 to 36721 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,501 DEBUG Processing 168/904 atomic regions from SNP 50267 to 50868 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,527 DEBUG Processing 174/862 atomic regions from SNP 52056 to 52656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,529 DEBUG Processing 121/475 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,614 DEBUG Processing 99/1139 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,628 DEBUG Processing 122/1029 atomic regions from SNP 36421 to 37022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,742 DEBUG Processing 169/904 atomic regions from SNP 50568 to 51169 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,761 DEBUG Processing 122/475 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,791 DEBUG Processing 175/862 atomic regions from SNP 52356 to 52956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,882 DEBUG Processing 100/1139 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,883 DEBUG Processing 123/1029 atomic regions from SNP 36722 to 37323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,977 DEBUG Processing 170/904 atomic regions from SNP 50869 to 51470 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,991 DEBUG Processing 123/475 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,046 DEBUG Processing 176/862 atomic regions from SNP 52656 to 53256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,139 DEBUG Processing 124/1029 atomic regions from SNP 37023 to 37624 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,148 DEBUG Processing 101/1139 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,210 DEBUG Processing 171/904 atomic regions from SNP 51170 to 51771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,213 DEBUG Processing 124/475 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,294 DEBUG Processing 177/862 atomic regions from SNP 52956 to 53556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,393 DEBUG Processing 125/1029 atomic regions from SNP 37324 to 37925 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,413 DEBUG Processing 102/1139 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,440 DEBUG Processing 125/475 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,447 DEBUG Processing 172/904 atomic regions from SNP 51471 to 52072 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,549 DEBUG Processing 178/862 atomic regions from SNP 53256 to 53856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,653 DEBUG Processing 126/1029 atomic regions from SNP 37625 to 38226 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,669 DEBUG Processing 126/475 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,682 DEBUG Processing 103/1139 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,687 DEBUG Processing 173/904 atomic regions from SNP 51772 to 52373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,789 DEBUG Processing 179/862 atomic regions from SNP 53556 to 54156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,903 DEBUG Processing 127/475 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,917 DEBUG Processing 127/1029 atomic regions from SNP 37926 to 38527 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,947 DEBUG Processing 174/904 atomic regions from SNP 52073 to 52674 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,957 DEBUG Processing 104/1139 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,019 DEBUG Processing 180/862 atomic regions from SNP 53856 to 54456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,135 DEBUG Processing 128/475 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,177 DEBUG Processing 128/1029 atomic regions from SNP 38227 to 38828 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,190 DEBUG Processing 175/904 atomic regions from SNP 52374 to 52975 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,225 DEBUG Processing 105/1139 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,256 DEBUG Processing 181/862 atomic regions from SNP 54156 to 54756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,362 DEBUG Processing 129/475 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,427 DEBUG Processing 176/904 atomic regions from SNP 52675 to 53276 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,460 DEBUG Processing 129/1029 atomic regions from SNP 38528 to 39129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,489 DEBUG Processing 182/862 atomic regions from SNP 54456 to 55056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,493 DEBUG Processing 106/1139 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,587 DEBUG Processing 130/475 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,663 DEBUG Processing 177/904 atomic regions from SNP 52976 to 53577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,718 DEBUG Processing 183/862 atomic regions from SNP 54756 to 55356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,750 DEBUG Processing 130/1029 atomic regions from SNP 38829 to 39430 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,760 DEBUG Processing 107/1139 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,813 DEBUG Processing 131/475 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,898 DEBUG Processing 178/904 atomic regions from SNP 53277 to 53878 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,953 DEBUG Processing 184/862 atomic regions from SNP 55056 to 55656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,036 DEBUG Processing 108/1139 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,050 DEBUG Processing 132/475 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,051 DEBUG Processing 131/1029 atomic regions from SNP 39130 to 39731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,128 DEBUG Processing 179/904 atomic regions from SNP 53578 to 54179 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,179 DEBUG Processing 185/862 atomic regions from SNP 55356 to 55956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,286 DEBUG Processing 133/475 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,307 DEBUG Processing 109/1139 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,347 DEBUG Processing 132/1029 atomic regions from SNP 39431 to 40032 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,359 DEBUG Processing 180/904 atomic regions from SNP 53879 to 54480 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,402 DEBUG Processing 186/862 atomic regions from SNP 55656 to 56256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,515 DEBUG Processing 134/475 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,573 DEBUG Processing 110/1139 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,596 DEBUG Processing 181/904 atomic regions from SNP 54180 to 54781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,629 DEBUG Processing 133/1029 atomic regions from SNP 39732 to 40333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,652 DEBUG Processing 187/862 atomic regions from SNP 55956 to 56556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,737 DEBUG Processing 135/475 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,835 DEBUG Processing 182/904 atomic regions from SNP 54481 to 55082 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,838 DEBUG Processing 111/1139 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,896 DEBUG Processing 134/1029 atomic regions from SNP 40033 to 40634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,916 DEBUG Processing 188/862 atomic regions from SNP 56256 to 56856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,962 DEBUG Processing 136/475 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,067 DEBUG Processing 183/904 atomic regions from SNP 54782 to 55383 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,102 DEBUG Processing 112/1139 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,178 DEBUG Processing 135/1029 atomic regions from SNP 40334 to 40935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,179 DEBUG Processing 189/862 atomic regions from SNP 56556 to 57156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,195 DEBUG Processing 137/475 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,294 DEBUG Processing 184/904 atomic regions from SNP 55083 to 55684 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,365 DEBUG Processing 113/1139 atomic regions from SNP 33712 to 34313 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,420 DEBUG Processing 190/862 atomic regions from SNP 56856 to 57456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,433 DEBUG Processing 138/475 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,475 DEBUG Processing 136/1029 atomic regions from SNP 40635 to 41236 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,523 DEBUG Processing 185/904 atomic regions from SNP 55384 to 55985 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,631 DEBUG Processing 114/1139 atomic regions from SNP 34013 to 34614 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,655 DEBUG Processing 191/862 atomic regions from SNP 57156 to 57756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,668 DEBUG Processing 139/475 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,759 DEBUG Processing 186/904 atomic regions from SNP 55685 to 56286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,768 DEBUG Processing 137/1029 atomic regions from SNP 40936 to 41537 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,888 DEBUG Processing 192/862 atomic regions from SNP 57456 to 58056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,898 DEBUG Processing 115/1139 atomic regions from SNP 34314 to 34915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,898 DEBUG Processing 140/475 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,997 DEBUG Processing 187/904 atomic regions from SNP 55986 to 56587 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,064 DEBUG Processing 138/1029 atomic regions from SNP 41237 to 41838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,117 DEBUG Processing 193/862 atomic regions from SNP 57756 to 58356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,124 DEBUG Processing 141/475 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,165 DEBUG Processing 116/1139 atomic regions from SNP 34615 to 35216 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,233 DEBUG Processing 188/904 atomic regions from SNP 56287 to 56888 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,346 DEBUG Processing 194/862 atomic regions from SNP 58056 to 58656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,348 DEBUG Processing 139/1029 atomic regions from SNP 41538 to 42139 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,351 DEBUG Processing 142/475 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,429 DEBUG Processing 117/1139 atomic regions from SNP 34916 to 35517 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,469 DEBUG Processing 189/904 atomic regions from SNP 56588 to 57189 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,577 DEBUG Processing 143/475 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,577 DEBUG Processing 195/862 atomic regions from SNP 58356 to 58956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,616 DEBUG Processing 140/1029 atomic regions from SNP 41839 to 42440 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,700 DEBUG Processing 118/1139 atomic regions from SNP 35217 to 35818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,706 DEBUG Processing 190/904 atomic regions from SNP 56889 to 57490 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,800 DEBUG Processing 144/475 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,802 DEBUG Processing 196/862 atomic regions from SNP 58656 to 59256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,900 DEBUG Processing 141/1029 atomic regions from SNP 42140 to 42741 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,950 DEBUG Processing 191/904 atomic regions from SNP 57190 to 57791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,976 DEBUG Processing 119/1139 atomic regions from SNP 35518 to 36119 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,025 DEBUG Processing 145/475 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,031 DEBUG Processing 197/862 atomic regions from SNP 58956 to 59556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,187 DEBUG Processing 142/1029 atomic regions from SNP 42441 to 43042 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,188 DEBUG Processing 192/904 atomic regions from SNP 57491 to 58092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,243 DEBUG Processing 120/1139 atomic regions from SNP 35819 to 36420 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,247 DEBUG Processing 146/475 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,258 DEBUG Processing 198/862 atomic regions from SNP 59256 to 59856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,426 DEBUG Processing 193/904 atomic regions from SNP 57792 to 58393 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,461 DEBUG Processing 143/1029 atomic regions from SNP 42742 to 43343 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,476 DEBUG Processing 147/475 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,506 DEBUG Processing 199/862 atomic regions from SNP 59556 to 60156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,513 DEBUG Processing 121/1139 atomic regions from SNP 36120 to 36721 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,663 DEBUG Processing 194/904 atomic regions from SNP 58093 to 58694 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,706 DEBUG Processing 148/475 atomic regions from SNP 44247 to 44848 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,746 DEBUG Processing 144/1029 atomic regions from SNP 43043 to 43644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,751 DEBUG Processing 200/862 atomic regions from SNP 59856 to 60456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,781 DEBUG Processing 122/1139 atomic regions from SNP 36421 to 37022 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,894 DEBUG Processing 195/904 atomic regions from SNP 58394 to 58995 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,932 DEBUG Processing 149/475 atomic regions from SNP 44548 to 45149 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,983 DEBUG Processing 201/862 atomic regions from SNP 60156 to 60756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,038 DEBUG Processing 145/1029 atomic regions from SNP 43344 to 43945 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,052 DEBUG Processing 123/1139 atomic regions from SNP 36722 to 37323 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,123 DEBUG Processing 196/904 atomic regions from SNP 58695 to 59296 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,151 DEBUG Processing 150/475 atomic regions from SNP 44849 to 45450 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,209 DEBUG Processing 202/862 atomic regions from SNP 60456 to 61056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,320 DEBUG Processing 146/1029 atomic regions from SNP 43645 to 44246 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,321 DEBUG Processing 124/1139 atomic regions from SNP 37023 to 37624 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,358 DEBUG Processing 197/904 atomic regions from SNP 58996 to 59597 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,375 DEBUG Processing 151/475 atomic regions from SNP 45150 to 45751 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,434 DEBUG Processing 203/862 atomic regions from SNP 60756 to 61356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,588 DEBUG Processing 125/1139 atomic regions from SNP 37324 to 37925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,596 DEBUG Processing 147/1029 atomic regions from SNP 43946 to 44547 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,600 DEBUG Processing 198/904 atomic regions from SNP 59297 to 59898 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,605 DEBUG Processing 152/475 atomic regions from SNP 45451 to 46052 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,659 DEBUG Processing 204/862 atomic regions from SNP 61056 to 61656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,840 DEBUG Processing 153/475 atomic regions from SNP 45752 to 46353 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,847 DEBUG Processing 199/904 atomic regions from SNP 59598 to 60199 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,860 DEBUG Processing 126/1139 atomic regions from SNP 37625 to 38226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,880 DEBUG Processing 148/1029 atomic regions from SNP 44247 to 44848 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,892 DEBUG Processing 205/862 atomic regions from SNP 61356 to 61956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,081 DEBUG Processing 154/475 atomic regions from SNP 46053 to 46654 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,098 DEBUG Processing 200/904 atomic regions from SNP 59899 to 60500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,138 DEBUG Processing 206/862 atomic regions from SNP 61656 to 62256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,142 DEBUG Processing 127/1139 atomic regions from SNP 37926 to 38527 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,169 DEBUG Processing 149/1029 atomic regions from SNP 44548 to 45149 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,312 DEBUG Processing 155/475 atomic regions from SNP 46354 to 46955 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,341 DEBUG Processing 201/904 atomic regions from SNP 60200 to 60801 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,379 DEBUG Processing 207/862 atomic regions from SNP 61956 to 62556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,419 DEBUG Processing 128/1139 atomic regions from SNP 38227 to 38828 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,443 DEBUG Processing 150/1029 atomic regions from SNP 44849 to 45450 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,540 DEBUG Processing 156/475 atomic regions from SNP 46655 to 47256 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,588 DEBUG Processing 202/904 atomic regions from SNP 60501 to 61102 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,621 DEBUG Processing 208/862 atomic regions from SNP 62256 to 62856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,698 DEBUG Processing 129/1139 atomic regions from SNP 38528 to 39129 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,733 DEBUG Processing 151/1029 atomic regions from SNP 45150 to 45751 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,762 DEBUG Processing 157/475 atomic regions from SNP 46956 to 47557 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,829 DEBUG Processing 203/904 atomic regions from SNP 60802 to 61403 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,855 DEBUG Processing 209/862 atomic regions from SNP 62556 to 63156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,969 DEBUG Processing 130/1139 atomic regions from SNP 38829 to 39430 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,986 DEBUG Processing 158/475 atomic regions from SNP 47257 to 47858 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,025 DEBUG Processing 152/1029 atomic regions from SNP 45451 to 46052 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,066 DEBUG Processing 204/904 atomic regions from SNP 61103 to 61704 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,086 DEBUG Processing 210/862 atomic regions from SNP 62856 to 63456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,210 DEBUG Processing 159/475 atomic regions from SNP 47558 to 48159 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,231 DEBUG Processing 131/1139 atomic regions from SNP 39130 to 39731 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,309 DEBUG Processing 205/904 atomic regions from SNP 61404 to 62005 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,314 DEBUG Processing 153/1029 atomic regions from SNP 45752 to 46353 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,324 DEBUG Processing 211/862 atomic regions from SNP 63156 to 63756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,436 DEBUG Processing 160/475 atomic regions from SNP 47859 to 48460 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,498 DEBUG Processing 132/1139 atomic regions from SNP 39431 to 40032 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,559 DEBUG Processing 206/904 atomic regions from SNP 61705 to 62306 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,568 DEBUG Processing 212/862 atomic regions from SNP 63456 to 64056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,597 DEBUG Processing 154/1029 atomic regions from SNP 46053 to 46654 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,672 DEBUG Processing 161/475 atomic regions from SNP 48160 to 48761 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,766 DEBUG Processing 133/1139 atomic regions from SNP 39732 to 40333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,803 DEBUG Processing 207/904 atomic regions from SNP 62006 to 62607 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,813 DEBUG Processing 213/862 atomic regions from SNP 63756 to 64356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,874 DEBUG Processing 155/1029 atomic regions from SNP 46354 to 46955 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,902 DEBUG Processing 162/475 atomic regions from SNP 48461 to 49062 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,029 DEBUG Processing 134/1139 atomic regions from SNP 40033 to 40634 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,041 DEBUG Processing 208/904 atomic regions from SNP 62307 to 62908 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,045 DEBUG Processing 214/862 atomic regions from SNP 64056 to 64656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,139 DEBUG Processing 163/475 atomic regions from SNP 48762 to 49363 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,145 DEBUG Processing 156/1029 atomic regions from SNP 46655 to 47256 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,277 DEBUG Processing 215/862 atomic regions from SNP 64356 to 64956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,277 DEBUG Processing 209/904 atomic regions from SNP 62608 to 63209 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,291 DEBUG Processing 135/1139 atomic regions from SNP 40334 to 40935 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,377 DEBUG Processing 164/475 atomic regions from SNP 49063 to 49664 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,417 DEBUG Processing 157/1029 atomic regions from SNP 46956 to 47557 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,505 DEBUG Processing 216/862 atomic regions from SNP 64656 to 65256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,514 DEBUG Processing 210/904 atomic regions from SNP 62909 to 63510 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,559 DEBUG Processing 136/1139 atomic regions from SNP 40635 to 41236 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,616 DEBUG Processing 165/475 atomic regions from SNP 49364 to 49965 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,702 DEBUG Processing 158/1029 atomic regions from SNP 47257 to 47858 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,738 DEBUG Processing 217/862 atomic regions from SNP 64956 to 65556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,755 DEBUG Processing 211/904 atomic regions from SNP 63210 to 63811 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,831 DEBUG Processing 137/1139 atomic regions from SNP 40936 to 41537 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,850 DEBUG Processing 166/475 atomic regions from SNP 49665 to 50266 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,969 DEBUG Processing 218/862 atomic regions from SNP 65256 to 65856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,987 DEBUG Processing 159/1029 atomic regions from SNP 47558 to 48159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,993 DEBUG Processing 212/904 atomic regions from SNP 63511 to 64112 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,083 DEBUG Processing 167/475 atomic regions from SNP 49966 to 50567 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,106 DEBUG Processing 138/1139 atomic regions from SNP 41237 to 41838 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,201 DEBUG Processing 219/862 atomic regions from SNP 65556 to 66156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,233 DEBUG Processing 213/904 atomic regions from SNP 63812 to 64413 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,277 DEBUG Processing 160/1029 atomic regions from SNP 47859 to 48460 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,316 DEBUG Processing 168/475 atomic regions from SNP 50267 to 50868 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,374 DEBUG Processing 139/1139 atomic regions from SNP 41538 to 42139 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,430 DEBUG Processing 220/862 atomic regions from SNP 65856 to 66456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,474 DEBUG Processing 214/904 atomic regions from SNP 64113 to 64714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,553 DEBUG Processing 169/475 atomic regions from SNP 50568 to 51169 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,574 DEBUG Processing 161/1029 atomic regions from SNP 48160 to 48761 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,645 DEBUG Processing 140/1139 atomic regions from SNP 41839 to 42440 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,659 DEBUG Processing 221/862 atomic regions from SNP 66156 to 66756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,717 DEBUG Processing 215/904 atomic regions from SNP 64414 to 65015 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,791 DEBUG Processing 170/475 atomic regions from SNP 50869 to 51470 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,869 DEBUG Processing 162/1029 atomic regions from SNP 48461 to 49062 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,889 DEBUG Processing 222/862 atomic regions from SNP 66456 to 67056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,911 DEBUG Processing 141/1139 atomic regions from SNP 42140 to 42741 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,960 DEBUG Processing 216/904 atomic regions from SNP 64715 to 65316 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,025 DEBUG Processing 171/475 atomic regions from SNP 51170 to 51771 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,119 DEBUG Processing 223/862 atomic regions from SNP 66756 to 67356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,164 DEBUG Processing 163/1029 atomic regions from SNP 48762 to 49363 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,179 DEBUG Processing 142/1139 atomic regions from SNP 42441 to 43042 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,197 DEBUG Processing 217/904 atomic regions from SNP 65016 to 65617 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,254 DEBUG Processing 172/475 atomic regions from SNP 51471 to 52072 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,358 DEBUG Processing 224/862 atomic regions from SNP 67056 to 67656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,441 DEBUG Processing 218/904 atomic regions from SNP 65317 to 65918 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,443 DEBUG Processing 164/1029 atomic regions from SNP 49063 to 49664 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,449 DEBUG Processing 143/1139 atomic regions from SNP 42742 to 43343 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,487 DEBUG Processing 173/475 atomic regions from SNP 51772 to 52373 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,591 DEBUG Processing 225/862 atomic regions from SNP 67356 to 67956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,686 DEBUG Processing 219/904 atomic regions from SNP 65618 to 66219 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,720 DEBUG Processing 174/475 atomic regions from SNP 52073 to 52674 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,721 DEBUG Processing 165/1029 atomic regions from SNP 49364 to 49965 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,722 DEBUG Processing 144/1139 atomic regions from SNP 43043 to 43644 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,825 DEBUG Processing 226/862 atomic regions from SNP 67656 to 68256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,931 DEBUG Processing 220/904 atomic regions from SNP 65919 to 66520 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,954 DEBUG Processing 175/475 atomic regions from SNP 52374 to 52975 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,996 DEBUG Processing 145/1139 atomic regions from SNP 43344 to 43945 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,016 DEBUG Processing 166/1029 atomic regions from SNP 49665 to 50266 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,060 DEBUG Processing 227/862 atomic regions from SNP 67956 to 68556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,119 DEBUG Segmenting atomic regions: 2025-01-31 09:44:37,171 DEBUG Processing 221/904 atomic regions from SNP 66220 to 66821 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,184 DEBUG Processing 176/475 atomic regions from SNP 52675 to 53276 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,237 DEBUG Processing 1/653 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,268 DEBUG Processing 146/1139 atomic regions from SNP 43645 to 44246 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,295 DEBUG Processing 228/862 atomic regions from SNP 68256 to 68856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,312 DEBUG Processing 167/1029 atomic regions from SNP 49966 to 50567 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,409 DEBUG Processing 222/904 atomic regions from SNP 66521 to 67122 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,412 DEBUG Processing 177/475 atomic regions from SNP 52976 to 53577 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,500 DEBUG Processing 2/653 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,534 DEBUG Processing 229/862 atomic regions from SNP 68556 to 69156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,543 DEBUG Processing 147/1139 atomic regions from SNP 43946 to 44547 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,599 DEBUG Processing 168/1029 atomic regions from SNP 50267 to 50868 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,641 DEBUG Processing 178/475 atomic regions from SNP 53277 to 53878 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,652 DEBUG Processing 223/904 atomic regions from SNP 66822 to 67423 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,764 DEBUG Processing 3/653 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,769 DEBUG Processing 230/862 atomic regions from SNP 68856 to 69456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,817 DEBUG Processing 148/1139 atomic regions from SNP 44247 to 44848 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,875 DEBUG Processing 179/475 atomic regions from SNP 53578 to 54179 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,880 DEBUG Processing 169/1029 atomic regions from SNP 50568 to 51169 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,895 DEBUG Processing 224/904 atomic regions from SNP 67123 to 67724 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,996 DEBUG Processing 4/653 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,000 DEBUG Processing 231/862 atomic regions from SNP 69156 to 69756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,089 DEBUG Processing 149/1139 atomic regions from SNP 44548 to 45149 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,112 DEBUG Processing 180/475 atomic regions from SNP 53879 to 54480 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,145 DEBUG Processing 225/904 atomic regions from SNP 67424 to 68025 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,167 DEBUG Processing 170/1029 atomic regions from SNP 50869 to 51470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,232 DEBUG Processing 232/862 atomic regions from SNP 69456 to 70056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,260 DEBUG Processing 5/653 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,344 DEBUG Processing 181/475 atomic regions from SNP 54180 to 54781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,358 DEBUG Processing 150/1139 atomic regions from SNP 44849 to 45450 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,393 DEBUG Processing 226/904 atomic regions from SNP 67725 to 68326 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,458 DEBUG Processing 171/1029 atomic regions from SNP 51170 to 51771 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,470 DEBUG Processing 233/862 atomic regions from SNP 69756 to 70356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,529 DEBUG Processing 6/653 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,577 DEBUG Processing 182/475 atomic regions from SNP 54481 to 55082 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,634 DEBUG Processing 151/1139 atomic regions from SNP 45150 to 45751 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,645 DEBUG Processing 227/904 atomic regions from SNP 68026 to 68627 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,711 DEBUG Processing 234/862 atomic regions from SNP 70056 to 70656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,751 DEBUG Processing 172/1029 atomic regions from SNP 51471 to 52072 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,772 DEBUG Processing 7/653 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,806 DEBUG Processing 183/475 atomic regions from SNP 54782 to 55383 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,895 DEBUG Processing 228/904 atomic regions from SNP 68327 to 68928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,913 DEBUG Processing 152/1139 atomic regions from SNP 45451 to 46052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,951 DEBUG Processing 235/862 atomic regions from SNP 70356 to 70956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,023 DEBUG Processing 8/653 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,026 DEBUG Processing 173/1029 atomic regions from SNP 51772 to 52373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,033 DEBUG Processing 184/475 atomic regions from SNP 55083 to 55684 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,140 DEBUG Processing 229/904 atomic regions from SNP 68628 to 69229 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,188 DEBUG Processing 153/1139 atomic regions from SNP 45752 to 46353 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,189 DEBUG Processing 236/862 atomic regions from SNP 70656 to 71256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,264 DEBUG Processing 185/475 atomic regions from SNP 55384 to 55985 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,277 DEBUG Processing 9/653 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,305 DEBUG Processing 174/1029 atomic regions from SNP 52073 to 52674 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,384 DEBUG Processing 230/904 atomic regions from SNP 68929 to 69530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,428 DEBUG Processing 237/862 atomic regions from SNP 70956 to 71556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,464 DEBUG Processing 154/1139 atomic regions from SNP 46053 to 46654 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,493 DEBUG Processing 186/475 atomic regions from SNP 55685 to 56286 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,525 DEBUG Processing 10/653 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,601 DEBUG Processing 175/1029 atomic regions from SNP 52374 to 52975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,632 DEBUG Processing 231/904 atomic regions from SNP 69230 to 69831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,671 DEBUG Processing 238/862 atomic regions from SNP 71256 to 71856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,731 DEBUG Processing 187/475 atomic regions from SNP 55986 to 56587 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,741 DEBUG Processing 155/1139 atomic regions from SNP 46354 to 46955 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,763 DEBUG Processing 11/653 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,880 DEBUG Processing 232/904 atomic regions from SNP 69531 to 70132 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,898 DEBUG Processing 176/1029 atomic regions from SNP 52675 to 53276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,907 DEBUG Processing 239/862 atomic regions from SNP 71556 to 72156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,962 DEBUG Processing 188/475 atomic regions from SNP 56287 to 56888 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,999 DEBUG Processing 12/653 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,016 DEBUG Processing 156/1139 atomic regions from SNP 46655 to 47256 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,136 DEBUG Processing 233/904 atomic regions from SNP 69832 to 70433 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,151 DEBUG Processing 240/862 atomic regions from SNP 71856 to 72456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,197 DEBUG Processing 189/475 atomic regions from SNP 56588 to 57189 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,206 DEBUG Processing 177/1029 atomic regions from SNP 52976 to 53577 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,227 DEBUG Processing 13/653 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,280 DEBUG Processing 157/1139 atomic regions from SNP 46956 to 47557 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,385 DEBUG Processing 234/904 atomic regions from SNP 70133 to 70734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,394 DEBUG Processing 241/862 atomic regions from SNP 72156 to 72756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,435 DEBUG Processing 190/475 atomic regions from SNP 56889 to 57490 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,471 DEBUG Processing 14/653 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,509 DEBUG Processing 178/1029 atomic regions from SNP 53277 to 53878 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,546 DEBUG Processing 158/1139 atomic regions from SNP 47257 to 47858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,634 DEBUG Processing 242/862 atomic regions from SNP 72456 to 73056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,635 DEBUG Processing 235/904 atomic regions from SNP 70434 to 71035 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,673 DEBUG Processing 191/475 atomic regions from SNP 57190 to 57791 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,738 DEBUG Processing 15/653 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,812 DEBUG Processing 159/1139 atomic regions from SNP 47558 to 48159 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,814 DEBUG Processing 179/1029 atomic regions from SNP 53578 to 54179 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,875 DEBUG Processing 243/862 atomic regions from SNP 72756 to 73356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,881 DEBUG Processing 236/904 atomic regions from SNP 70735 to 71336 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,917 DEBUG Processing 192/475 atomic regions from SNP 57491 to 58092 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,992 DEBUG Processing 16/653 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,103 DEBUG Processing 180/1029 atomic regions from SNP 53879 to 54480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,107 DEBUG Processing 160/1139 atomic regions from SNP 47859 to 48460 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,117 DEBUG Processing 244/862 atomic regions from SNP 73056 to 73656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,130 DEBUG Processing 237/904 atomic regions from SNP 71036 to 71637 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,160 DEBUG Processing 193/475 atomic regions from SNP 57792 to 58393 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,248 DEBUG Processing 17/653 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,359 DEBUG Processing 245/862 atomic regions from SNP 73356 to 73956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,378 DEBUG Processing 238/904 atomic regions from SNP 71337 to 71938 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,380 DEBUG Processing 181/1029 atomic regions from SNP 54180 to 54781 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,390 DEBUG Processing 161/1139 atomic regions from SNP 48160 to 48761 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,412 DEBUG Processing 194/475 atomic regions from SNP 58093 to 58694 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,489 DEBUG Processing 18/653 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,596 DEBUG Processing 246/862 atomic regions from SNP 73656 to 74256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,625 DEBUG Processing 239/904 atomic regions from SNP 71638 to 72239 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,649 DEBUG Processing 182/1029 atomic regions from SNP 54481 to 55082 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,662 DEBUG Processing 195/475 atomic regions from SNP 58394 to 58995 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,665 DEBUG Processing 162/1139 atomic regions from SNP 48461 to 49062 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,743 DEBUG Processing 19/653 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,833 DEBUG Processing 247/862 atomic regions from SNP 73956 to 74556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,871 DEBUG Processing 240/904 atomic regions from SNP 71939 to 72540 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,904 DEBUG Processing 196/475 atomic regions from SNP 58695 to 59296 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,921 DEBUG Processing 183/1029 atomic regions from SNP 54782 to 55383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,942 DEBUG Processing 163/1139 atomic regions from SNP 48762 to 49363 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,995 DEBUG Processing 20/653 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,069 DEBUG Processing 248/862 atomic regions from SNP 74256 to 74856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,119 DEBUG Processing 241/904 atomic regions from SNP 72240 to 72841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,137 DEBUG Processing 197/475 atomic regions from SNP 58996 to 59597 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,192 DEBUG Processing 184/1029 atomic regions from SNP 55083 to 55684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,213 DEBUG Processing 164/1139 atomic regions from SNP 49063 to 49664 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,249 DEBUG Processing 21/653 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,307 DEBUG Processing 249/862 atomic regions from SNP 74556 to 75156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,368 DEBUG Processing 242/904 atomic regions from SNP 72541 to 73142 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,375 DEBUG Processing 198/475 atomic regions from SNP 59297 to 59898 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,471 DEBUG Processing 185/1029 atomic regions from SNP 55384 to 55985 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,483 DEBUG Processing 165/1139 atomic regions from SNP 49364 to 49965 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,497 DEBUG Processing 22/653 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,545 DEBUG Processing 250/862 atomic regions from SNP 74856 to 75456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,620 DEBUG Processing 199/475 atomic regions from SNP 59598 to 60199 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,622 DEBUG Processing 243/904 atomic regions from SNP 72842 to 73443 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,749 DEBUG Processing 186/1029 atomic regions from SNP 55685 to 56286 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,754 DEBUG Processing 23/653 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,757 DEBUG Processing 166/1139 atomic regions from SNP 49665 to 50266 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,789 DEBUG Processing 251/862 atomic regions from SNP 75156 to 75756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,873 DEBUG Processing 200/475 atomic regions from SNP 59899 to 60500 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,885 DEBUG Processing 244/904 atomic regions from SNP 73143 to 73744 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,019 DEBUG Processing 187/1029 atomic regions from SNP 55986 to 56587 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,024 DEBUG Processing 24/653 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,029 DEBUG Processing 252/862 atomic regions from SNP 75456 to 76056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,033 DEBUG Processing 167/1139 atomic regions from SNP 49966 to 50567 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,114 DEBUG Processing 201/475 atomic regions from SNP 60200 to 60801 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,135 DEBUG Processing 245/904 atomic regions from SNP 73444 to 74045 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,265 DEBUG Processing 253/862 atomic regions from SNP 75756 to 76356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,280 DEBUG Processing 25/653 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,282 DEBUG Processing 188/1029 atomic regions from SNP 56287 to 56888 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,307 DEBUG Processing 168/1139 atomic regions from SNP 50267 to 50868 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,359 DEBUG Processing 202/475 atomic regions from SNP 60501 to 61102 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,383 DEBUG Processing 246/904 atomic regions from SNP 73745 to 74346 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,497 DEBUG Processing 254/862 atomic regions from SNP 76056 to 76656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,531 DEBUG Processing 26/653 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,545 DEBUG Processing 189/1029 atomic regions from SNP 56588 to 57189 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,579 DEBUG Processing 169/1139 atomic regions from SNP 50568 to 51169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,614 DEBUG Processing 203/475 atomic regions from SNP 60802 to 61403 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,628 DEBUG Processing 247/904 atomic regions from SNP 74046 to 74647 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,731 DEBUG Processing 255/862 atomic regions from SNP 76356 to 76956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,773 DEBUG Processing 27/653 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,816 DEBUG Processing 190/1029 atomic regions from SNP 56889 to 57490 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,852 DEBUG Processing 170/1139 atomic regions from SNP 50869 to 51470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,875 DEBUG Processing 248/904 atomic regions from SNP 74347 to 74948 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,877 DEBUG Processing 204/475 atomic regions from SNP 61103 to 61704 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,966 DEBUG Processing 256/862 atomic regions from SNP 76656 to 77256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,006 DEBUG Processing 28/653 atomic regions from SNP 8127 to 8727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,108 DEBUG Processing 191/1029 atomic regions from SNP 57190 to 57791 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,119 DEBUG Processing 249/904 atomic regions from SNP 74648 to 75249 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,127 DEBUG Processing 171/1139 atomic regions from SNP 51170 to 51771 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,142 DEBUG Processing 205/475 atomic regions from SNP 61404 to 62005 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,202 DEBUG Processing 257/862 atomic regions from SNP 76956 to 77556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,242 DEBUG Processing 29/653 atomic regions from SNP 8427 to 9027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,365 DEBUG Processing 250/904 atomic regions from SNP 74949 to 75550 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,402 DEBUG Processing 172/1139 atomic regions from SNP 51471 to 52072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,402 DEBUG Processing 192/1029 atomic regions from SNP 57491 to 58092 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,406 DEBUG Processing 206/475 atomic regions from SNP 61705 to 62306 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,442 DEBUG Processing 258/862 atomic regions from SNP 77256 to 77856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,479 DEBUG Processing 30/653 atomic regions from SNP 8727 to 9327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,611 DEBUG Processing 251/904 atomic regions from SNP 75250 to 75851 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,680 DEBUG Processing 173/1139 atomic regions from SNP 51772 to 52373 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,685 DEBUG Processing 207/475 atomic regions from SNP 62006 to 62607 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,685 DEBUG Processing 259/862 atomic regions from SNP 77556 to 78156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,686 DEBUG Processing 193/1029 atomic regions from SNP 57792 to 58393 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,719 DEBUG Processing 31/653 atomic regions from SNP 9027 to 9627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,850 DEBUG Processing 252/904 atomic regions from SNP 75551 to 76152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,927 DEBUG Processing 260/862 atomic regions from SNP 77856 to 78456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,956 DEBUG Processing 208/475 atomic regions from SNP 62307 to 62908 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,958 DEBUG Processing 32/653 atomic regions from SNP 9327 to 9927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,960 DEBUG Processing 174/1139 atomic regions from SNP 52073 to 52674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,982 DEBUG Processing 194/1029 atomic regions from SNP 58093 to 58694 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,090 DEBUG Processing 253/904 atomic regions from SNP 75852 to 76452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,165 DEBUG Processing 261/862 atomic regions from SNP 78156 to 78756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,209 DEBUG Processing 33/653 atomic regions from SNP 9627 to 10227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,225 DEBUG Processing 209/475 atomic regions from SNP 62608 to 63209 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,236 DEBUG Processing 175/1139 atomic regions from SNP 52374 to 52975 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,281 DEBUG Processing 195/1029 atomic regions from SNP 58394 to 58995 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,329 DEBUG Processing 254/904 atomic regions from SNP 76152 to 76752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,396 DEBUG Processing 262/862 atomic regions from SNP 78456 to 79056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,471 DEBUG Processing 34/653 atomic regions from SNP 9927 to 10527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,500 DEBUG Processing 210/475 atomic regions from SNP 62909 to 63509 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,538 DEBUG Processing 176/1139 atomic regions from SNP 52675 to 53276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,569 DEBUG Processing 196/1029 atomic regions from SNP 58695 to 59296 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,576 DEBUG Processing 255/904 atomic regions from SNP 76452 to 77052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,626 DEBUG Processing 263/862 atomic regions from SNP 78756 to 79356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,704 DEBUG Processing 35/653 atomic regions from SNP 10227 to 10827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,747 DEBUG Processing 211/475 atomic regions from SNP 63209 to 63809 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,827 DEBUG Processing 256/904 atomic regions from SNP 76752 to 77352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,837 DEBUG Processing 177/1139 atomic regions from SNP 52976 to 53577 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,847 DEBUG Processing 197/1029 atomic regions from SNP 58996 to 59597 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,865 DEBUG Processing 264/862 atomic regions from SNP 79056 to 79656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,933 DEBUG Processing 36/653 atomic regions from SNP 10527 to 11127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,976 DEBUG Processing 212/475 atomic regions from SNP 63509 to 64109 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,075 DEBUG Processing 257/904 atomic regions from SNP 77052 to 77652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,104 DEBUG Processing 265/862 atomic regions from SNP 79356 to 79956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,111 DEBUG Processing 178/1139 atomic regions from SNP 53277 to 53878 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,116 DEBUG Processing 198/1029 atomic regions from SNP 59297 to 59898 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,172 DEBUG Processing 37/653 atomic regions from SNP 10827 to 11427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,213 DEBUG Processing 213/475 atomic regions from SNP 63809 to 64409 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,321 DEBUG Processing 258/904 atomic regions from SNP 77352 to 77952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,345 DEBUG Processing 266/862 atomic regions from SNP 79656 to 80256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,390 DEBUG Processing 199/1029 atomic regions from SNP 59598 to 60199 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,392 DEBUG Processing 179/1139 atomic regions from SNP 53578 to 54179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,413 DEBUG Processing 38/653 atomic regions from SNP 11127 to 11727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,444 DEBUG Processing 214/475 atomic regions from SNP 64109 to 64709 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,560 DEBUG Processing 259/904 atomic regions from SNP 77652 to 78252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,582 DEBUG Processing 267/862 atomic regions from SNP 79956 to 80556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,655 DEBUG Processing 39/653 atomic regions from SNP 11427 to 12027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,663 DEBUG Processing 200/1029 atomic regions from SNP 59899 to 60500 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,680 DEBUG Processing 215/475 atomic regions from SNP 64409 to 65009 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,685 DEBUG Processing 180/1139 atomic regions from SNP 53879 to 54480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,799 DEBUG Processing 260/904 atomic regions from SNP 77952 to 78552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,815 DEBUG Processing 268/862 atomic regions from SNP 80256 to 80856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,896 DEBUG Processing 40/653 atomic regions from SNP 11727 to 12327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,918 DEBUG Processing 216/475 atomic regions from SNP 64709 to 65309 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,931 DEBUG Processing 201/1029 atomic regions from SNP 60200 to 60801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,991 DEBUG Processing 181/1139 atomic regions from SNP 54180 to 54781 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,038 DEBUG Processing 261/904 atomic regions from SNP 78252 to 78852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,045 DEBUG Processing 269/862 atomic regions from SNP 80556 to 81156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,134 DEBUG Processing 41/653 atomic regions from SNP 12027 to 12627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,157 DEBUG Processing 217/475 atomic regions from SNP 65009 to 65609 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,203 DEBUG Processing 202/1029 atomic regions from SNP 60501 to 61101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,283 DEBUG Processing 270/862 atomic regions from SNP 80856 to 81456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,284 DEBUG Processing 262/904 atomic regions from SNP 78552 to 79152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,290 DEBUG Processing 182/1139 atomic regions from SNP 54481 to 55082 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,367 DEBUG Processing 42/653 atomic regions from SNP 12327 to 12927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,388 DEBUG Processing 218/475 atomic regions from SNP 65309 to 65909 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,470 DEBUG Processing 203/1029 atomic regions from SNP 60801 to 61401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,522 DEBUG Processing 271/862 atomic regions from SNP 81156 to 81756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,529 DEBUG Processing 263/904 atomic regions from SNP 78852 to 79452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,599 DEBUG Processing 183/1139 atomic regions from SNP 54782 to 55383 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,609 DEBUG Processing 43/653 atomic regions from SNP 12627 to 13227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,624 DEBUG Processing 219/475 atomic regions from SNP 65609 to 66209 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,738 DEBUG Processing 204/1029 atomic regions from SNP 61101 to 61701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,761 DEBUG Processing 272/862 atomic regions from SNP 81456 to 82056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,773 DEBUG Processing 264/904 atomic regions from SNP 79152 to 79752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,844 DEBUG Processing 44/653 atomic regions from SNP 12927 to 13527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,859 DEBUG Processing 220/475 atomic regions from SNP 65909 to 66509 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,888 DEBUG Processing 184/1139 atomic regions from SNP 55083 to 55684 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,004 DEBUG Processing 273/862 atomic regions from SNP 81756 to 82356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,007 DEBUG Processing 205/1029 atomic regions from SNP 61401 to 62001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,023 DEBUG Processing 265/904 atomic regions from SNP 79452 to 80052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,084 DEBUG Processing 45/653 atomic regions from SNP 13227 to 13827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,095 DEBUG Processing 221/475 atomic regions from SNP 66209 to 66809 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,167 DEBUG Processing 185/1139 atomic regions from SNP 55384 to 55985 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,248 DEBUG Processing 274/862 atomic regions from SNP 82056 to 82656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,273 DEBUG Processing 266/904 atomic regions from SNP 79752 to 80352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,280 DEBUG Processing 206/1029 atomic regions from SNP 61701 to 62301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,318 DEBUG Processing 46/653 atomic regions from SNP 13527 to 14127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,327 DEBUG Processing 222/475 atomic regions from SNP 66509 to 67109 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,445 DEBUG Processing 186/1139 atomic regions from SNP 55685 to 56286 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,501 DEBUG Processing 275/862 atomic regions from SNP 82356 to 82956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,530 DEBUG Processing 267/904 atomic regions from SNP 80052 to 80652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,558 DEBUG Processing 47/653 atomic regions from SNP 13827 to 14427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,562 DEBUG Processing 223/475 atomic regions from SNP 66809 to 67409 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,570 DEBUG Processing 207/1029 atomic regions from SNP 62001 to 62601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,724 DEBUG Processing 187/1139 atomic regions from SNP 55986 to 56587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,752 DEBUG Processing 276/862 atomic regions from SNP 82656 to 83256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,792 DEBUG Processing 268/904 atomic regions from SNP 80352 to 80952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,799 DEBUG Processing 48/653 atomic regions from SNP 14127 to 14727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,802 DEBUG Processing 224/475 atomic regions from SNP 67109 to 67709 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,840 DEBUG Processing 208/1029 atomic regions from SNP 62301 to 62901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,005 DEBUG Processing 277/862 atomic regions from SNP 82956 to 83556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,010 DEBUG Processing 188/1139 atomic regions from SNP 56287 to 56888 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,046 DEBUG Processing 49/653 atomic regions from SNP 14427 to 15027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,057 DEBUG Processing 225/475 atomic regions from SNP 67409 to 68009 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,074 DEBUG Processing 269/904 atomic regions from SNP 80652 to 81252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,130 DEBUG Processing 209/1029 atomic regions from SNP 62601 to 63201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,248 DEBUG Processing 278/862 atomic regions from SNP 83256 to 83856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,289 DEBUG Processing 189/1139 atomic regions from SNP 56588 to 57189 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,293 DEBUG Processing 50/653 atomic regions from SNP 14727 to 15327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,326 DEBUG Processing 226/475 atomic regions from SNP 67709 to 68309 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,369 DEBUG Processing 270/904 atomic regions from SNP 80952 to 81552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,399 DEBUG Processing 210/1029 atomic regions from SNP 62901 to 63501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,485 DEBUG Processing 279/862 atomic regions from SNP 83556 to 84156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,539 DEBUG Processing 51/653 atomic regions from SNP 15027 to 15627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,577 DEBUG Processing 227/475 atomic regions from SNP 68009 to 68609 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,592 DEBUG Processing 190/1139 atomic regions from SNP 56889 to 57490 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,653 DEBUG Processing 271/904 atomic regions from SNP 81252 to 81852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,666 DEBUG Processing 211/1029 atomic regions from SNP 63201 to 63801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,719 DEBUG Processing 280/862 atomic regions from SNP 83856 to 84456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,783 DEBUG Processing 52/653 atomic regions from SNP 15327 to 15927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,827 DEBUG Processing 228/475 atomic regions from SNP 68309 to 68909 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,909 DEBUG Processing 191/1139 atomic regions from SNP 57190 to 57791 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,936 DEBUG Processing 272/904 atomic regions from SNP 81552 to 82152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,937 DEBUG Processing 212/1029 atomic regions from SNP 63501 to 64101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,957 DEBUG Processing 281/862 atomic regions from SNP 84156 to 84756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,026 DEBUG Processing 53/653 atomic regions from SNP 15627 to 16227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,076 DEBUG Processing 229/475 atomic regions from SNP 68609 to 69209 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,211 DEBUG Processing 282/862 atomic regions from SNP 84456 to 85056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,213 DEBUG Processing 273/904 atomic regions from SNP 81852 to 82452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,223 DEBUG Processing 213/1029 atomic regions from SNP 63801 to 64401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,227 DEBUG Processing 192/1139 atomic regions from SNP 57491 to 58092 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,266 DEBUG Processing 54/653 atomic regions from SNP 15927 to 16527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,316 DEBUG Processing 230/475 atomic regions from SNP 68909 to 69509 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,456 DEBUG Processing 283/862 atomic regions from SNP 84756 to 85356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,465 DEBUG Processing 274/904 atomic regions from SNP 82152 to 82752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,503 DEBUG Processing 214/1029 atomic regions from SNP 64101 to 64701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,508 DEBUG Processing 55/653 atomic regions from SNP 16227 to 16827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,538 DEBUG Processing 193/1139 atomic regions from SNP 57792 to 58393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,556 DEBUG Processing 231/475 atomic regions from SNP 69209 to 69809 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,695 DEBUG Processing 284/862 atomic regions from SNP 85056 to 85656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,712 DEBUG Processing 275/904 atomic regions from SNP 82452 to 83052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,747 DEBUG Processing 56/653 atomic regions from SNP 16527 to 17127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,798 DEBUG Processing 232/475 atomic regions from SNP 69509 to 70109 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,803 DEBUG Processing 215/1029 atomic regions from SNP 64401 to 65001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,859 DEBUG Processing 194/1139 atomic regions from SNP 58093 to 58694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,934 DEBUG Processing 285/862 atomic regions from SNP 85356 to 85956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,960 DEBUG Processing 276/904 atomic regions from SNP 82752 to 83352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,988 DEBUG Processing 57/653 atomic regions from SNP 16827 to 17427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,040 DEBUG Processing 233/475 atomic regions from SNP 69809 to 70409 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,092 DEBUG Processing 216/1029 atomic regions from SNP 64701 to 65301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,165 DEBUG Processing 195/1139 atomic regions from SNP 58394 to 58995 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,178 DEBUG Processing 286/862 atomic regions from SNP 85656 to 86256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,205 DEBUG Processing 277/904 atomic regions from SNP 83052 to 83652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,224 DEBUG Processing 58/653 atomic regions from SNP 17127 to 17727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,274 DEBUG Processing 234/475 atomic regions from SNP 70109 to 70709 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,390 DEBUG Processing 217/1029 atomic regions from SNP 65001 to 65601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,423 DEBUG Processing 287/862 atomic regions from SNP 85956 to 86556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,454 DEBUG Processing 278/904 atomic regions from SNP 83352 to 83952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,469 DEBUG Processing 59/653 atomic regions from SNP 17427 to 18027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,476 DEBUG Processing 196/1139 atomic regions from SNP 58695 to 59296 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,510 DEBUG Processing 235/475 atomic regions from SNP 70409 to 71009 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,659 DEBUG Processing 218/1029 atomic regions from SNP 65301 to 65901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,685 DEBUG Processing 288/862 atomic regions from SNP 86256 to 86856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,705 DEBUG Processing 279/904 atomic regions from SNP 83652 to 84252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,709 DEBUG Processing 60/653 atomic regions from SNP 17727 to 18327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,752 DEBUG Processing 236/475 atomic regions from SNP 70709 to 71309 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,767 DEBUG Processing 197/1139 atomic regions from SNP 58996 to 59597 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,933 DEBUG Processing 219/1029 atomic regions from SNP 65601 to 66201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,951 DEBUG Processing 289/862 atomic regions from SNP 86556 to 87156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,957 DEBUG Processing 61/653 atomic regions from SNP 18027 to 18627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,961 DEBUG Processing 280/904 atomic regions from SNP 83952 to 84552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,009 DEBUG Processing 237/475 atomic regions from SNP 71009 to 71609 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,071 DEBUG Processing 198/1139 atomic regions from SNP 59297 to 59898 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,196 DEBUG Processing 290/862 atomic regions from SNP 86856 to 87456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,200 DEBUG Processing 62/653 atomic regions from SNP 18327 to 18927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,205 DEBUG Processing 220/1029 atomic regions from SNP 65901 to 66501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,213 DEBUG Processing 281/904 atomic regions from SNP 84252 to 84852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,251 DEBUG Processing 238/475 atomic regions from SNP 71309 to 71909 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,373 DEBUG Processing 199/1139 atomic regions from SNP 59598 to 60199 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,436 DEBUG Processing 291/862 atomic regions from SNP 87156 to 87756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,441 DEBUG Processing 63/653 atomic regions from SNP 18627 to 19227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,463 DEBUG Processing 282/904 atomic regions from SNP 84552 to 85152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,471 DEBUG Processing 221/1029 atomic regions from SNP 66201 to 66801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,492 DEBUG Processing 239/475 atomic regions from SNP 71609 to 72209 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,660 DEBUG Processing 200/1139 atomic regions from SNP 59899 to 60500 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,678 DEBUG Processing 292/862 atomic regions from SNP 87456 to 88056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,680 DEBUG Processing 64/653 atomic regions from SNP 18927 to 19527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,712 DEBUG Processing 283/904 atomic regions from SNP 84852 to 85452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,733 DEBUG Processing 240/475 atomic regions from SNP 71909 to 72509 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,740 DEBUG Processing 222/1029 atomic regions from SNP 66501 to 67101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,920 DEBUG Processing 293/862 atomic regions from SNP 87756 to 88356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,921 DEBUG Processing 65/653 atomic regions from SNP 19227 to 19827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,944 DEBUG Processing 201/1139 atomic regions from SNP 60200 to 60801 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,964 DEBUG Processing 284/904 atomic regions from SNP 85152 to 85752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,973 DEBUG Processing 241/475 atomic regions from SNP 72209 to 72809 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,013 DEBUG Processing 223/1029 atomic regions from SNP 66801 to 67401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,158 DEBUG Processing 294/862 atomic regions from SNP 88056 to 88656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,160 DEBUG Processing 66/653 atomic regions from SNP 19527 to 20127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,212 DEBUG Processing 285/904 atomic regions from SNP 85452 to 86052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,213 DEBUG Processing 242/475 atomic regions from SNP 72509 to 73109 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,259 DEBUG Processing 202/1139 atomic regions from SNP 60501 to 61102 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,286 DEBUG Processing 224/1029 atomic regions from SNP 67101 to 67701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,398 DEBUG Processing 67/653 atomic regions from SNP 19827 to 20427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,398 DEBUG Processing 295/862 atomic regions from SNP 88356 to 88956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,450 DEBUG Processing 243/475 atomic regions from SNP 72809 to 73409 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,460 DEBUG Processing 286/904 atomic regions from SNP 85752 to 86352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,565 DEBUG Processing 225/1029 atomic regions from SNP 67401 to 68001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,567 DEBUG Processing 203/1139 atomic regions from SNP 60802 to 61403 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,640 DEBUG Processing 68/653 atomic regions from SNP 20127 to 20727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,644 DEBUG Processing 296/862 atomic regions from SNP 88656 to 89256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,686 DEBUG Processing 244/475 atomic regions from SNP 73109 to 73709 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,705 DEBUG Processing 287/904 atomic regions from SNP 86052 to 86652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,841 DEBUG Processing 226/1029 atomic regions from SNP 67701 to 68301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,859 DEBUG Processing 204/1139 atomic regions from SNP 61103 to 61704 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,888 DEBUG Processing 69/653 atomic regions from SNP 20427 to 21027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,892 DEBUG Processing 297/862 atomic regions from SNP 88956 to 89556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,924 DEBUG Processing 245/475 atomic regions from SNP 73409 to 74009 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,948 DEBUG Processing 288/904 atomic regions from SNP 86352 to 86952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,115 DEBUG Processing 227/1029 atomic regions from SNP 68001 to 68601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,137 DEBUG Processing 70/653 atomic regions from SNP 20727 to 21327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,144 DEBUG Processing 205/1139 atomic regions from SNP 61404 to 62005 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,144 DEBUG Processing 298/862 atomic regions from SNP 89256 to 89856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,172 DEBUG Processing 246/475 atomic regions from SNP 73709 to 74309 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,200 DEBUG Processing 289/904 atomic regions from SNP 86652 to 87252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,388 DEBUG Processing 71/653 atomic regions from SNP 21027 to 21627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,390 DEBUG Processing 228/1029 atomic regions from SNP 68301 to 68901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,396 DEBUG Processing 299/862 atomic regions from SNP 89556 to 90156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,422 DEBUG Processing 247/475 atomic regions from SNP 74009 to 74609 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,433 DEBUG Processing 206/1139 atomic regions from SNP 61705 to 62306 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,457 DEBUG Processing 290/904 atomic regions from SNP 86952 to 87552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,631 DEBUG Processing 72/653 atomic regions from SNP 21327 to 21927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,644 DEBUG Processing 300/862 atomic regions from SNP 89856 to 90456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,665 DEBUG Processing 229/1029 atomic regions from SNP 68601 to 69201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,673 DEBUG Processing 248/475 atomic regions from SNP 74309 to 74909 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,714 DEBUG Processing 291/904 atomic regions from SNP 87252 to 87852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,726 DEBUG Processing 207/1139 atomic regions from SNP 62006 to 62607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,873 DEBUG Processing 73/653 atomic regions from SNP 21627 to 22227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,889 DEBUG Processing 301/862 atomic regions from SNP 90156 to 90756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,916 DEBUG Processing 249/475 atomic regions from SNP 74609 to 75209 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,939 DEBUG Processing 230/1029 atomic regions from SNP 68901 to 69501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,969 DEBUG Processing 292/904 atomic regions from SNP 87552 to 88152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,034 DEBUG Processing 208/1139 atomic regions from SNP 62307 to 62908 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,110 DEBUG Processing 74/653 atomic regions from SNP 21927 to 22527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,130 DEBUG Processing 302/862 atomic regions from SNP 90456 to 91056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,155 DEBUG Processing 250/475 atomic regions from SNP 74909 to 75509 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,210 DEBUG Processing 231/1029 atomic regions from SNP 69201 to 69801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,223 DEBUG Processing 293/904 atomic regions from SNP 87852 to 88452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,335 DEBUG Processing 209/1139 atomic regions from SNP 62608 to 63209 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,355 DEBUG Processing 75/653 atomic regions from SNP 22227 to 22827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,374 DEBUG Processing 303/862 atomic regions from SNP 90756 to 91356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,399 DEBUG Processing 251/475 atomic regions from SNP 75209 to 75809 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,474 DEBUG Processing 294/904 atomic regions from SNP 88152 to 88752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,481 DEBUG Processing 232/1029 atomic regions from SNP 69501 to 70101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,601 DEBUG Processing 76/653 atomic regions from SNP 22527 to 23127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,616 DEBUG Processing 210/1139 atomic regions from SNP 62909 to 63510 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,622 DEBUG Processing 304/862 atomic regions from SNP 91056 to 91656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,640 DEBUG Processing 252/475 atomic regions from SNP 75509 to 76109 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,722 DEBUG Processing 295/904 atomic regions from SNP 88452 to 89052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,750 DEBUG Processing 233/1029 atomic regions from SNP 69801 to 70401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,850 DEBUG Processing 77/653 atomic regions from SNP 22827 to 23427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,871 DEBUG Processing 305/862 atomic regions from SNP 91356 to 91956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,887 DEBUG Processing 253/475 atomic regions from SNP 75809 to 76409 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,914 DEBUG Processing 211/1139 atomic regions from SNP 63210 to 63811 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,977 DEBUG Processing 296/904 atomic regions from SNP 88752 to 89352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,023 DEBUG Processing 234/1029 atomic regions from SNP 70101 to 70701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,087 DEBUG Processing 78/653 atomic regions from SNP 23127 to 23727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,116 DEBUG Processing 306/862 atomic regions from SNP 91656 to 92256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,127 DEBUG Processing 254/475 atomic regions from SNP 76109 to 76709 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,220 DEBUG Processing 212/1139 atomic regions from SNP 63511 to 64112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,230 DEBUG Processing 297/904 atomic regions from SNP 89052 to 89652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,296 DEBUG Processing 235/1029 atomic regions from SNP 70401 to 71001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,333 DEBUG Processing 79/653 atomic regions from SNP 23427 to 24027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,362 DEBUG Processing 307/862 atomic regions from SNP 91956 to 92556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,367 DEBUG Processing 255/475 atomic regions from SNP 76409 to 77009 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,483 DEBUG Processing 298/904 atomic regions from SNP 89352 to 89952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,516 DEBUG Processing 213/1139 atomic regions from SNP 63812 to 64413 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,574 DEBUG Processing 236/1029 atomic regions from SNP 70701 to 71301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,577 DEBUG Processing 80/653 atomic regions from SNP 23727 to 24327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,608 DEBUG Processing 308/862 atomic regions from SNP 92256 to 92856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,608 DEBUG Processing 256/475 atomic regions from SNP 76709 to 77309 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,733 DEBUG Processing 299/904 atomic regions from SNP 89652 to 90252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,802 DEBUG Processing 214/1139 atomic regions from SNP 64113 to 64714 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,829 DEBUG Processing 81/653 atomic regions from SNP 24027 to 24627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,856 DEBUG Processing 237/1029 atomic regions from SNP 71001 to 71601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,857 DEBUG Processing 257/475 atomic regions from SNP 77009 to 77609 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,861 DEBUG Processing 309/862 atomic regions from SNP 92556 to 93156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,974 DEBUG Processing 300/904 atomic regions from SNP 89952 to 90552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,080 DEBUG Processing 82/653 atomic regions from SNP 24327 to 24927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,086 DEBUG Processing 215/1139 atomic regions from SNP 64414 to 65015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,112 DEBUG Processing 258/475 atomic regions from SNP 77309 to 77909 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,117 DEBUG Processing 310/862 atomic regions from SNP 92856 to 93456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,141 DEBUG Processing 238/1029 atomic regions from SNP 71301 to 71901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,220 DEBUG Processing 301/904 atomic regions from SNP 90252 to 90852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,328 DEBUG Processing 83/653 atomic regions from SNP 24627 to 25227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,364 DEBUG Processing 259/475 atomic regions from SNP 77609 to 78209 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,371 DEBUG Processing 216/1139 atomic regions from SNP 64715 to 65316 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,371 DEBUG Processing 311/862 atomic regions from SNP 93156 to 93756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,419 DEBUG Processing 239/1029 atomic regions from SNP 71601 to 72201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,465 DEBUG Processing 302/904 atomic regions from SNP 90552 to 91152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,565 DEBUG Processing 84/653 atomic regions from SNP 24927 to 25527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,611 DEBUG Processing 260/475 atomic regions from SNP 77909 to 78509 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,625 DEBUG Processing 312/862 atomic regions from SNP 93456 to 94056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,657 DEBUG Processing 217/1139 atomic regions from SNP 65016 to 65617 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,692 DEBUG Processing 240/1029 atomic regions from SNP 71901 to 72501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,714 DEBUG Processing 303/904 atomic regions from SNP 90852 to 91452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,801 DEBUG Processing 85/653 atomic regions from SNP 25227 to 25827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,853 DEBUG Processing 261/475 atomic regions from SNP 78209 to 78809 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,873 DEBUG Processing 313/862 atomic regions from SNP 93756 to 94356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,940 DEBUG Processing 218/1139 atomic regions from SNP 65317 to 65918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,967 DEBUG Processing 304/904 atomic regions from SNP 91152 to 91752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,968 DEBUG Processing 241/1029 atomic regions from SNP 72201 to 72801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,046 DEBUG Processing 86/653 atomic regions from SNP 25527 to 26127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,087 DEBUG Processing 262/475 atomic regions from SNP 78509 to 79109 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,111 DEBUG Processing 314/862 atomic regions from SNP 94056 to 94656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,221 DEBUG Processing 305/904 atomic regions from SNP 91452 to 92052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,226 DEBUG Processing 219/1139 atomic regions from SNP 65618 to 66219 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,242 DEBUG Processing 242/1029 atomic regions from SNP 72501 to 73101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,289 DEBUG Processing 87/653 atomic regions from SNP 25827 to 26427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,323 DEBUG Processing 263/475 atomic regions from SNP 78809 to 79409 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,349 DEBUG Processing 315/862 atomic regions from SNP 94356 to 94956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,477 DEBUG Processing 306/904 atomic regions from SNP 91752 to 92352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,507 DEBUG Processing 220/1139 atomic regions from SNP 65919 to 66520 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,522 DEBUG Processing 243/1029 atomic regions from SNP 72801 to 73401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,536 DEBUG Processing 88/653 atomic regions from SNP 26127 to 26727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,568 DEBUG Processing 264/475 atomic regions from SNP 79109 to 79709 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,591 DEBUG Processing 316/862 atomic regions from SNP 94656 to 95256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,729 DEBUG Processing 307/904 atomic regions from SNP 92052 to 92652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,787 DEBUG Processing 89/653 atomic regions from SNP 26427 to 27027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,790 DEBUG Processing 221/1139 atomic regions from SNP 66220 to 66821 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,799 DEBUG Processing 244/1029 atomic regions from SNP 73101 to 73701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,817 DEBUG Processing 265/475 atomic regions from SNP 79409 to 80009 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,838 DEBUG Processing 317/862 atomic regions from SNP 94956 to 95556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,977 DEBUG Processing 308/904 atomic regions from SNP 92352 to 92952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,038 DEBUG Processing 90/653 atomic regions from SNP 26727 to 27327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,070 DEBUG Processing 266/475 atomic regions from SNP 79709 to 80309 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,080 DEBUG Processing 222/1139 atomic regions from SNP 66521 to 67122 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,082 DEBUG Processing 245/1029 atomic regions from SNP 73401 to 74001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,096 DEBUG Processing 318/862 atomic regions from SNP 95256 to 95856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,226 DEBUG Processing 309/904 atomic regions from SNP 92652 to 93252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,296 DEBUG Processing 91/653 atomic regions from SNP 27027 to 27627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,316 DEBUG Processing 267/475 atomic regions from SNP 80009 to 80609 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,348 DEBUG Processing 319/862 atomic regions from SNP 95556 to 96156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,364 DEBUG Processing 246/1029 atomic regions from SNP 73701 to 74301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,370 DEBUG Processing 223/1139 atomic regions from SNP 66822 to 67423 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,472 DEBUG Processing 310/904 atomic regions from SNP 92952 to 93552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,545 DEBUG Processing 92/653 atomic regions from SNP 27327 to 27927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,557 DEBUG Processing 268/475 atomic regions from SNP 80309 to 80909 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,600 DEBUG Processing 320/862 atomic regions from SNP 95856 to 96456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,643 DEBUG Processing 247/1029 atomic regions from SNP 74001 to 74601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,656 DEBUG Processing 224/1139 atomic regions from SNP 67123 to 67724 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,713 DEBUG Processing 311/904 atomic regions from SNP 93252 to 93852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,775 DEBUG Processing 93/653 atomic regions from SNP 27627 to 28227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,786 DEBUG Processing 269/475 atomic regions from SNP 80609 to 81209 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,843 DEBUG Processing 321/862 atomic regions from SNP 96156 to 96756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,924 DEBUG Processing 248/1029 atomic regions from SNP 74301 to 74901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,948 DEBUG Processing 225/1139 atomic regions from SNP 67424 to 68025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,970 DEBUG Processing 312/904 atomic regions from SNP 93552 to 94152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,012 DEBUG Processing 94/653 atomic regions from SNP 27927 to 28527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,024 DEBUG Processing 270/475 atomic regions from SNP 80909 to 81509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,081 DEBUG Processing 322/862 atomic regions from SNP 96456 to 97056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,202 DEBUG Processing 249/1029 atomic regions from SNP 74601 to 75201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,228 DEBUG Processing 313/904 atomic regions from SNP 93852 to 94452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,235 DEBUG Processing 226/1139 atomic regions from SNP 67725 to 68326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,260 DEBUG Processing 95/653 atomic regions from SNP 28227 to 28827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,272 DEBUG Processing 271/475 atomic regions from SNP 81209 to 81809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,329 DEBUG Processing 323/862 atomic regions from SNP 96756 to 97356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,475 DEBUG Processing 250/1029 atomic regions from SNP 74901 to 75501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,480 DEBUG Processing 314/904 atomic regions from SNP 94152 to 94752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,500 DEBUG Processing 96/653 atomic regions from SNP 28527 to 29127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,512 DEBUG Processing 272/475 atomic regions from SNP 81509 to 82109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,517 DEBUG Processing 227/1139 atomic regions from SNP 68026 to 68627 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,570 DEBUG Processing 324/862 atomic regions from SNP 97056 to 97656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,731 DEBUG Processing 315/904 atomic regions from SNP 94452 to 95052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,744 DEBUG Processing 97/653 atomic regions from SNP 28827 to 29427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,747 DEBUG Processing 251/1029 atomic regions from SNP 75201 to 75801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,756 DEBUG Processing 273/475 atomic regions from SNP 81809 to 82409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,800 DEBUG Processing 228/1139 atomic regions from SNP 68327 to 68928 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,818 DEBUG Processing 325/862 atomic regions from SNP 97356 to 97956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,984 DEBUG Processing 316/904 atomic regions from SNP 94752 to 95352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,999 DEBUG Processing 98/653 atomic regions from SNP 29127 to 29727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,008 DEBUG Processing 274/475 atomic regions from SNP 82109 to 82709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,039 DEBUG Processing 252/1029 atomic regions from SNP 75501 to 76101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,080 DEBUG Processing 326/862 atomic regions from SNP 97656 to 98256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,098 DEBUG Processing 229/1139 atomic regions from SNP 68628 to 69229 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,229 DEBUG Processing 317/904 atomic regions from SNP 95052 to 95652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,244 DEBUG Processing 275/475 atomic regions from SNP 82409 to 83009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,260 DEBUG Processing 99/653 atomic regions from SNP 29427 to 30027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,324 DEBUG Processing 253/1029 atomic regions from SNP 75801 to 76401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,331 DEBUG Processing 327/862 atomic regions from SNP 97956 to 98556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,379 DEBUG Processing 230/1139 atomic regions from SNP 68929 to 69530 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,469 DEBUG Processing 318/904 atomic regions from SNP 95352 to 95952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,472 DEBUG Processing 276/475 atomic regions from SNP 82709 to 83309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,504 DEBUG Processing 100/653 atomic regions from SNP 29727 to 30327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,579 DEBUG Processing 328/862 atomic regions from SNP 98256 to 98856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,599 DEBUG Processing 254/1029 atomic regions from SNP 76101 to 76701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,658 DEBUG Processing 231/1139 atomic regions from SNP 69230 to 69831 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,702 DEBUG Processing 277/475 atomic regions from SNP 83009 to 83609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,710 DEBUG Processing 319/904 atomic regions from SNP 95652 to 96252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,745 DEBUG Processing 101/653 atomic regions from SNP 30027 to 30627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,822 DEBUG Processing 329/862 atomic regions from SNP 98556 to 99156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,870 DEBUG Processing 255/1029 atomic regions from SNP 76401 to 77001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,936 DEBUG Processing 232/1139 atomic regions from SNP 69531 to 70132 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,937 DEBUG Processing 278/475 atomic regions from SNP 83309 to 83909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,963 DEBUG Processing 320/904 atomic regions from SNP 95952 to 96552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,997 DEBUG Processing 102/653 atomic regions from SNP 30327 to 30927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,064 DEBUG Processing 330/862 atomic regions from SNP 98856 to 99456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,138 DEBUG Processing 256/1029 atomic regions from SNP 76701 to 77301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,183 DEBUG Processing 279/475 atomic regions from SNP 83609 to 84209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,220 DEBUG Processing 233/1139 atomic regions from SNP 69832 to 70433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,221 DEBUG Processing 321/904 atomic regions from SNP 96252 to 96852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,259 DEBUG Processing 103/653 atomic regions from SNP 30627 to 31227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,303 DEBUG Processing 331/862 atomic regions from SNP 99156 to 99756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,400 DEBUG Processing 257/1029 atomic regions from SNP 77001 to 77601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,417 DEBUG Processing 280/475 atomic regions from SNP 83909 to 84509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,477 DEBUG Processing 322/904 atomic regions from SNP 96552 to 97152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,510 DEBUG Processing 234/1139 atomic regions from SNP 70133 to 70733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,522 DEBUG Processing 104/653 atomic regions from SNP 30927 to 31527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,549 DEBUG Processing 332/862 atomic regions from SNP 99456 to 100056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,651 DEBUG Processing 281/475 atomic regions from SNP 84209 to 84809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,666 DEBUG Processing 258/1029 atomic regions from SNP 77301 to 77901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,733 DEBUG Processing 323/904 atomic regions from SNP 96852 to 97452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,773 DEBUG Processing 105/653 atomic regions from SNP 31227 to 31827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,800 DEBUG Processing 333/862 atomic regions from SNP 99756 to 100356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,803 DEBUG Processing 235/1139 atomic regions from SNP 70433 to 71033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,880 DEBUG Processing 282/475 atomic regions from SNP 84509 to 85109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,924 DEBUG Processing 259/1029 atomic regions from SNP 77601 to 78201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,982 DEBUG Processing 324/904 atomic regions from SNP 97152 to 97752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,020 DEBUG Processing 106/653 atomic regions from SNP 31527 to 32127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,052 DEBUG Processing 334/862 atomic regions from SNP 100056 to 100656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,088 DEBUG Processing 236/1139 atomic regions from SNP 70733 to 71333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,116 DEBUG Processing 283/475 atomic regions from SNP 84809 to 85409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,190 DEBUG Processing 260/1029 atomic regions from SNP 77901 to 78501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,234 DEBUG Processing 325/904 atomic regions from SNP 97452 to 98052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,261 DEBUG Processing 107/653 atomic regions from SNP 31827 to 32427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,294 DEBUG Processing 335/862 atomic regions from SNP 100356 to 100956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,352 DEBUG Processing 284/475 atomic regions from SNP 85109 to 85709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,362 DEBUG Processing 237/1139 atomic regions from SNP 71033 to 71633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,455 DEBUG Processing 261/1029 atomic regions from SNP 78201 to 78801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,481 DEBUG Processing 326/904 atomic regions from SNP 97752 to 98352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,501 DEBUG Processing 108/653 atomic regions from SNP 32127 to 32727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,535 DEBUG Processing 336/862 atomic regions from SNP 100656 to 101256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,587 DEBUG Processing 285/475 atomic regions from SNP 85409 to 86009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,636 DEBUG Processing 238/1139 atomic regions from SNP 71333 to 71933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,724 DEBUG Processing 262/1029 atomic regions from SNP 78501 to 79101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,733 DEBUG Processing 327/904 atomic regions from SNP 98052 to 98652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,760 DEBUG Processing 109/653 atomic regions from SNP 32427 to 33027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,780 DEBUG Processing 337/862 atomic regions from SNP 100956 to 101556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,824 DEBUG Processing 286/475 atomic regions from SNP 85709 to 86309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,909 DEBUG Processing 239/1139 atomic regions from SNP 71633 to 72233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,981 DEBUG Processing 328/904 atomic regions from SNP 98352 to 98952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,988 DEBUG Processing 263/1029 atomic regions from SNP 78801 to 79401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,022 DEBUG Processing 110/653 atomic regions from SNP 32727 to 33327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,022 DEBUG Processing 338/862 atomic regions from SNP 101256 to 101856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,064 DEBUG Processing 287/475 atomic regions from SNP 86009 to 86609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,183 DEBUG Processing 240/1139 atomic regions from SNP 71933 to 72533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,230 DEBUG Processing 329/904 atomic regions from SNP 98652 to 99252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,256 DEBUG Processing 264/1029 atomic regions from SNP 79101 to 79701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,265 DEBUG Processing 111/653 atomic regions from SNP 33027 to 33627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,266 DEBUG Processing 339/862 atomic regions from SNP 101556 to 102156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,310 DEBUG Processing 288/475 atomic regions from SNP 86309 to 86909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,481 DEBUG Processing 241/1139 atomic regions from SNP 72233 to 72833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,500 DEBUG Processing 330/904 atomic regions from SNP 98952 to 99552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,510 DEBUG Processing 112/653 atomic regions from SNP 33327 to 33927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,512 DEBUG Processing 340/862 atomic regions from SNP 101856 to 102456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,527 DEBUG Processing 265/1029 atomic regions from SNP 79401 to 80001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,553 DEBUG Processing 289/475 atomic regions from SNP 86609 to 87209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,749 DEBUG Processing 331/904 atomic regions from SNP 99252 to 99852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,753 DEBUG Processing 113/653 atomic regions from SNP 33627 to 34227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,753 DEBUG Processing 242/1139 atomic regions from SNP 72533 to 73133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,759 DEBUG Processing 341/862 atomic regions from SNP 102156 to 102756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,798 DEBUG Processing 290/475 atomic regions from SNP 86909 to 87509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,803 DEBUG Processing 266/1029 atomic regions from SNP 79701 to 80301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,995 DEBUG Processing 114/653 atomic regions from SNP 33927 to 34527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,998 DEBUG Processing 332/904 atomic regions from SNP 99552 to 100152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,004 DEBUG Processing 342/862 atomic regions from SNP 102456 to 103056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,030 DEBUG Processing 243/1139 atomic regions from SNP 72833 to 73433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,047 DEBUG Processing 291/475 atomic regions from SNP 87209 to 87809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,080 DEBUG Processing 267/1029 atomic regions from SNP 80001 to 80601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,236 DEBUG Processing 115/653 atomic regions from SNP 34227 to 34827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,248 DEBUG Processing 343/862 atomic regions from SNP 102756 to 103356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,251 DEBUG Processing 333/904 atomic regions from SNP 99852 to 100452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,296 DEBUG Processing 292/475 atomic regions from SNP 87509 to 88109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,314 DEBUG Processing 244/1139 atomic regions from SNP 73133 to 73733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,357 DEBUG Processing 268/1029 atomic regions from SNP 80301 to 80901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,470 DEBUG Processing 116/653 atomic regions from SNP 34527 to 35127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,486 DEBUG Processing 344/862 atomic regions from SNP 103056 to 103656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,502 DEBUG Processing 334/904 atomic regions from SNP 100152 to 100752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,543 DEBUG Processing 293/475 atomic regions from SNP 87809 to 88409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,598 DEBUG Processing 245/1139 atomic regions from SNP 73433 to 74033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,628 DEBUG Processing 269/1029 atomic regions from SNP 80601 to 81201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,703 DEBUG Processing 117/653 atomic regions from SNP 34827 to 35427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,724 DEBUG Processing 345/862 atomic regions from SNP 103356 to 103956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,752 DEBUG Processing 335/904 atomic regions from SNP 100452 to 101052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,788 DEBUG Processing 294/475 atomic regions from SNP 88109 to 88709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,881 DEBUG Processing 246/1139 atomic regions from SNP 73733 to 74333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,902 DEBUG Processing 270/1029 atomic regions from SNP 80901 to 81501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,936 DEBUG Processing 118/653 atomic regions from SNP 35127 to 35727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,962 DEBUG Processing 346/862 atomic regions from SNP 103656 to 104256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,998 DEBUG Processing 336/904 atomic regions from SNP 100752 to 101352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,024 DEBUG Processing 295/475 atomic regions from SNP 88409 to 89009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,162 DEBUG Processing 247/1139 atomic regions from SNP 74033 to 74633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,172 DEBUG Processing 271/1029 atomic regions from SNP 81201 to 81801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,177 DEBUG Processing 119/653 atomic regions from SNP 35427 to 36027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,198 DEBUG Processing 347/862 atomic regions from SNP 103956 to 104556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,239 DEBUG Processing 337/904 atomic regions from SNP 101052 to 101652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,258 DEBUG Processing 296/475 atomic regions from SNP 88709 to 89309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,418 DEBUG Processing 120/653 atomic regions from SNP 35727 to 36327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,437 DEBUG Processing 248/1139 atomic regions from SNP 74333 to 74933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,438 DEBUG Processing 348/862 atomic regions from SNP 104256 to 104856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,444 DEBUG Processing 272/1029 atomic regions from SNP 81501 to 82101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,485 DEBUG Processing 338/904 atomic regions from SNP 101352 to 101952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,492 DEBUG Processing 297/475 atomic regions from SNP 89009 to 89609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,661 DEBUG Processing 121/653 atomic regions from SNP 36027 to 36627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,681 DEBUG Processing 349/862 atomic regions from SNP 104556 to 105156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,713 DEBUG Processing 273/1029 atomic regions from SNP 81801 to 82401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,718 DEBUG Processing 249/1139 atomic regions from SNP 74633 to 75233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,731 DEBUG Processing 298/475 atomic regions from SNP 89309 to 89909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,734 DEBUG Processing 339/904 atomic regions from SNP 101652 to 102252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,894 DEBUG Processing 122/653 atomic regions from SNP 36327 to 36927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,921 DEBUG Processing 350/862 atomic regions from SNP 104856 to 105456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,978 DEBUG Processing 299/475 atomic regions from SNP 89609 to 90209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,988 DEBUG Processing 274/1029 atomic regions from SNP 82101 to 82701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,990 DEBUG Processing 340/904 atomic regions from SNP 101952 to 102552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,004 DEBUG Processing 250/1139 atomic regions from SNP 74933 to 75533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,122 DEBUG Processing 123/653 atomic regions from SNP 36627 to 37227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,149 DEBUG Processing 351/862 atomic regions from SNP 105156 to 105756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,221 DEBUG Processing 300/475 atomic regions from SNP 89909 to 90509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,244 DEBUG Processing 341/904 atomic regions from SNP 102252 to 102852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,265 DEBUG Processing 275/1029 atomic regions from SNP 82401 to 83001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,288 DEBUG Processing 251/1139 atomic regions from SNP 75233 to 75833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,355 DEBUG Processing 124/653 atomic regions from SNP 36927 to 37527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,375 DEBUG Processing 352/862 atomic regions from SNP 105456 to 106056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,453 DEBUG Processing 301/475 atomic regions from SNP 90209 to 90809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,497 DEBUG Processing 342/904 atomic regions from SNP 102552 to 103152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,546 DEBUG Processing 276/1029 atomic regions from SNP 82701 to 83301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,582 DEBUG Processing 252/1139 atomic regions from SNP 75533 to 76133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,600 DEBUG Processing 125/653 atomic regions from SNP 37227 to 37827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,613 DEBUG Processing 353/862 atomic regions from SNP 105756 to 106356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,695 DEBUG Processing 302/475 atomic regions from SNP 90509 to 91109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,739 DEBUG Processing 343/904 atomic regions from SNP 102852 to 103452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,825 DEBUG Processing 277/1029 atomic regions from SNP 83001 to 83601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,849 DEBUG Processing 126/653 atomic regions from SNP 37527 to 38127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,865 DEBUG Processing 354/862 atomic regions from SNP 106056 to 106656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,869 DEBUG Processing 253/1139 atomic regions from SNP 75833 to 76433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,946 DEBUG Processing 303/475 atomic regions from SNP 90809 to 91409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,985 DEBUG Processing 344/904 atomic regions from SNP 103152 to 103752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,098 DEBUG Processing 127/653 atomic regions from SNP 37827 to 38427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,102 DEBUG Processing 278/1029 atomic regions from SNP 83301 to 83901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,130 DEBUG Processing 355/862 atomic regions from SNP 106356 to 106956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,155 DEBUG Processing 254/1139 atomic regions from SNP 76133 to 76733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,178 DEBUG Processing 304/475 atomic regions from SNP 91109 to 91709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,254 DEBUG Processing 345/904 atomic regions from SNP 103452 to 104052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,342 DEBUG Processing 128/653 atomic regions from SNP 38127 to 38727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,376 DEBUG Processing 279/1029 atomic regions from SNP 83601 to 84201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,401 DEBUG Processing 356/862 atomic regions from SNP 106656 to 107256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,438 DEBUG Processing 255/1139 atomic regions from SNP 76433 to 77033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,442 DEBUG Processing 305/475 atomic regions from SNP 91409 to 92009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,495 DEBUG Processing 346/904 atomic regions from SNP 103752 to 104352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,577 DEBUG Processing 129/653 atomic regions from SNP 38427 to 39027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,643 DEBUG Processing 280/1029 atomic regions from SNP 83901 to 84501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,664 DEBUG Processing 357/862 atomic regions from SNP 106956 to 107556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,687 DEBUG Processing 306/475 atomic regions from SNP 91709 to 92309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,715 DEBUG Processing 256/1139 atomic regions from SNP 76733 to 77333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,741 DEBUG Processing 347/904 atomic regions from SNP 104052 to 104652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,803 DEBUG Processing 130/653 atomic regions from SNP 38727 to 39327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,904 DEBUG Processing 281/1029 atomic regions from SNP 84201 to 84801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,928 DEBUG Processing 358/862 atomic regions from SNP 107256 to 107856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,929 DEBUG Processing 307/475 atomic regions from SNP 92009 to 92609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,997 DEBUG Processing 348/904 atomic regions from SNP 104352 to 104952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,997 DEBUG Processing 257/1139 atomic regions from SNP 77033 to 77633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,041 DEBUG Processing 131/653 atomic regions from SNP 39027 to 39627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,162 DEBUG Processing 308/475 atomic regions from SNP 92309 to 92909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,163 DEBUG Processing 282/1029 atomic regions from SNP 84501 to 85101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,163 DEBUG Processing 359/862 atomic regions from SNP 107556 to 108156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,256 DEBUG Processing 349/904 atomic regions from SNP 104652 to 105252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,280 DEBUG Processing 258/1139 atomic regions from SNP 77333 to 77933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,283 DEBUG Processing 132/653 atomic regions from SNP 39327 to 39927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,390 DEBUG Processing 309/475 atomic regions from SNP 92609 to 93209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,394 DEBUG Processing 360/862 atomic regions from SNP 107856 to 108456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,423 DEBUG Processing 283/1029 atomic regions from SNP 84801 to 85401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,511 DEBUG Processing 350/904 atomic regions from SNP 104952 to 105552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,531 DEBUG Processing 133/653 atomic regions from SNP 39627 to 40227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,565 DEBUG Processing 259/1139 atomic regions from SNP 77633 to 78233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,626 DEBUG Processing 310/475 atomic regions from SNP 92909 to 93509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,632 DEBUG Processing 361/862 atomic regions from SNP 108156 to 108756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,691 DEBUG Processing 284/1029 atomic regions from SNP 85101 to 85701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,762 DEBUG Processing 351/904 atomic regions from SNP 105252 to 105852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,772 DEBUG Processing 134/653 atomic regions from SNP 39927 to 40527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,849 DEBUG Processing 260/1139 atomic regions from SNP 77933 to 78533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,869 DEBUG Processing 311/475 atomic regions from SNP 93209 to 93809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,877 DEBUG Processing 362/862 atomic regions from SNP 108456 to 109056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,958 DEBUG Processing 285/1029 atomic regions from SNP 85401 to 86001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,010 DEBUG Processing 352/904 atomic regions from SNP 105552 to 106152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,012 DEBUG Processing 135/653 atomic regions from SNP 40227 to 40827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,117 DEBUG Processing 312/475 atomic regions from SNP 93509 to 94109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,128 DEBUG Processing 363/862 atomic regions from SNP 108756 to 109356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,131 DEBUG Processing 261/1139 atomic regions from SNP 78233 to 78833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,231 DEBUG Processing 286/1029 atomic regions from SNP 85701 to 86301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,245 DEBUG Processing 136/653 atomic regions from SNP 40527 to 41127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,255 DEBUG Processing 353/904 atomic regions from SNP 105852 to 106452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,357 DEBUG Processing 313/475 atomic regions from SNP 93809 to 94409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,378 DEBUG Processing 364/862 atomic regions from SNP 109056 to 109656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,419 DEBUG Processing 262/1139 atomic regions from SNP 78533 to 79133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,498 DEBUG Processing 137/653 atomic regions from SNP 40827 to 41427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,514 DEBUG Processing 287/1029 atomic regions from SNP 86001 to 86601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,516 DEBUG Processing 354/904 atomic regions from SNP 106152 to 106752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,590 DEBUG Processing 314/475 atomic regions from SNP 94109 to 94709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,614 DEBUG Processing 365/862 atomic regions from SNP 109356 to 109956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,690 DEBUG Processing 263/1139 atomic regions from SNP 78833 to 79433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,740 DEBUG Processing 138/653 atomic regions from SNP 41127 to 41727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,785 DEBUG Processing 355/904 atomic regions from SNP 106452 to 107052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,787 DEBUG Processing 288/1029 atomic regions from SNP 86301 to 86901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,836 DEBUG Processing 315/475 atomic regions from SNP 94409 to 95009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,848 DEBUG Processing 366/862 atomic regions from SNP 109656 to 110256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,961 DEBUG Processing 264/1139 atomic regions from SNP 79133 to 79733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,980 DEBUG Processing 139/653 atomic regions from SNP 41427 to 42027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,057 DEBUG Processing 356/904 atomic regions from SNP 106752 to 107352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,057 DEBUG Processing 289/1029 atomic regions from SNP 86601 to 87201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,092 DEBUG Processing 367/862 atomic regions from SNP 109956 to 110556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,099 DEBUG Processing 316/475 atomic regions from SNP 94709 to 95309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,210 DEBUG Processing 140/653 atomic regions from SNP 41727 to 42327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,229 DEBUG Processing 265/1139 atomic regions from SNP 79433 to 80033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,313 DEBUG Processing 357/904 atomic regions from SNP 107052 to 107652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,330 DEBUG Processing 290/1029 atomic regions from SNP 86901 to 87501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,346 DEBUG Processing 368/862 atomic regions from SNP 110256 to 110856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,367 DEBUG Processing 317/475 atomic regions from SNP 95009 to 95609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,445 DEBUG Processing 141/653 atomic regions from SNP 42027 to 42627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,498 DEBUG Processing 266/1139 atomic regions from SNP 79733 to 80333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,566 DEBUG Processing 358/904 atomic regions from SNP 107352 to 107952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,594 DEBUG Processing 369/862 atomic regions from SNP 110556 to 111156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,605 DEBUG Processing 291/1029 atomic regions from SNP 87201 to 87801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,635 DEBUG Processing 318/475 atomic regions from SNP 95309 to 95909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,678 DEBUG Processing 142/653 atomic regions from SNP 42327 to 42927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,762 DEBUG Processing 267/1139 atomic regions from SNP 80033 to 80633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,812 DEBUG Processing 359/904 atomic regions from SNP 107652 to 108252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,846 DEBUG Processing 370/862 atomic regions from SNP 110856 to 111456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,879 DEBUG Processing 292/1029 atomic regions from SNP 87501 to 88101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,889 DEBUG Processing 319/475 atomic regions from SNP 95609 to 96209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,918 DEBUG Processing 143/653 atomic regions from SNP 42627 to 43227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,026 DEBUG Processing 268/1139 atomic regions from SNP 80333 to 80933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,056 DEBUG Processing 360/904 atomic regions from SNP 107952 to 108552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,095 DEBUG Processing 371/862 atomic regions from SNP 111156 to 111756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,143 DEBUG Processing 320/475 atomic regions from SNP 95909 to 96509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,153 DEBUG Processing 293/1029 atomic regions from SNP 87801 to 88401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,158 DEBUG Processing 144/653 atomic regions from SNP 42927 to 43527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,293 DEBUG Processing 269/1139 atomic regions from SNP 80633 to 81233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,301 DEBUG Processing 361/904 atomic regions from SNP 108252 to 108852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,338 DEBUG Processing 372/862 atomic regions from SNP 111456 to 112056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,400 DEBUG Processing 145/653 atomic regions from SNP 43227 to 43827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,405 DEBUG Processing 321/475 atomic regions from SNP 96209 to 96809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,422 DEBUG Processing 294/1029 atomic regions from SNP 88101 to 88701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,549 DEBUG Processing 362/904 atomic regions from SNP 108552 to 109152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,569 DEBUG Processing 270/1139 atomic regions from SNP 80933 to 81533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,582 DEBUG Processing 373/862 atomic regions from SNP 111756 to 112356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,642 DEBUG Processing 146/653 atomic regions from SNP 43527 to 44127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,647 DEBUG Processing 322/475 atomic regions from SNP 96509 to 97109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,686 DEBUG Processing 295/1029 atomic regions from SNP 88401 to 89001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,797 DEBUG Processing 363/904 atomic regions from SNP 108852 to 109452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,824 DEBUG Processing 374/862 atomic regions from SNP 112056 to 112656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,846 DEBUG Processing 271/1139 atomic regions from SNP 81233 to 81833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,883 DEBUG Processing 147/653 atomic regions from SNP 43827 to 44427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,885 DEBUG Processing 323/475 atomic regions from SNP 96809 to 97409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,953 DEBUG Processing 296/1029 atomic regions from SNP 88701 to 89301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,050 DEBUG Processing 364/904 atomic regions from SNP 109152 to 109752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,065 DEBUG Processing 375/862 atomic regions from SNP 112356 to 112956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,122 DEBUG Processing 272/1139 atomic regions from SNP 81533 to 82133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,127 DEBUG Processing 324/475 atomic regions from SNP 97109 to 97709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,128 DEBUG Processing 148/653 atomic regions from SNP 44127 to 44727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,219 DEBUG Processing 297/1029 atomic regions from SNP 89001 to 89601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,304 DEBUG Processing 376/862 atomic regions from SNP 112656 to 113256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,321 DEBUG Processing 365/904 atomic regions from SNP 109452 to 110052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,372 DEBUG Processing 325/475 atomic regions from SNP 97409 to 98009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,375 DEBUG Processing 149/653 atomic regions from SNP 44427 to 45027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,410 DEBUG Processing 273/1139 atomic regions from SNP 81833 to 82433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,490 DEBUG Processing 298/1029 atomic regions from SNP 89301 to 89901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,546 DEBUG Processing 377/862 atomic regions from SNP 112956 to 113556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,573 DEBUG Processing 366/904 atomic regions from SNP 109752 to 110352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,618 DEBUG Processing 150/653 atomic regions from SNP 44727 to 45327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,630 DEBUG Processing 326/475 atomic regions from SNP 97709 to 98309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,690 DEBUG Processing 274/1139 atomic regions from SNP 82133 to 82733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,754 DEBUG Processing 299/1029 atomic regions from SNP 89601 to 90201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,783 DEBUG Processing 378/862 atomic regions from SNP 113256 to 113856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,821 DEBUG Processing 367/904 atomic regions from SNP 110052 to 110652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,864 DEBUG Processing 151/653 atomic regions from SNP 45027 to 45627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,893 DEBUG Processing 327/475 atomic regions from SNP 98009 to 98609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,972 DEBUG Processing 275/1139 atomic regions from SNP 82433 to 83033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,031 DEBUG Processing 379/862 atomic regions from SNP 113556 to 114156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,031 DEBUG Processing 300/1029 atomic regions from SNP 89901 to 90501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,073 DEBUG Processing 368/904 atomic regions from SNP 110352 to 110952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,101 DEBUG Processing 152/653 atomic regions from SNP 45327 to 45927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,126 DEBUG Processing 328/475 atomic regions from SNP 98309 to 98909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,244 DEBUG Processing 276/1139 atomic regions from SNP 82733 to 83333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,273 DEBUG Processing 380/862 atomic regions from SNP 113856 to 114456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,327 DEBUG Processing 369/904 atomic regions from SNP 110652 to 111252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,337 DEBUG Processing 301/1029 atomic regions from SNP 90201 to 90801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,342 DEBUG Processing 153/653 atomic regions from SNP 45627 to 46227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,359 DEBUG Processing 329/475 atomic regions from SNP 98609 to 99209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,514 DEBUG Processing 381/862 atomic regions from SNP 114156 to 114756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,514 DEBUG Processing 277/1139 atomic regions from SNP 83033 to 83633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,585 DEBUG Processing 370/904 atomic regions from SNP 110952 to 111552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,587 DEBUG Processing 154/653 atomic regions from SNP 45927 to 46527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,603 DEBUG Processing 330/475 atomic regions from SNP 98909 to 99509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,625 DEBUG Processing 302/1029 atomic regions from SNP 90501 to 91101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,748 DEBUG Processing 382/862 atomic regions from SNP 114456 to 115056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,785 DEBUG Processing 278/1139 atomic regions from SNP 83333 to 83933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,834 DEBUG Processing 155/653 atomic regions from SNP 46227 to 46827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,840 DEBUG Processing 371/904 atomic regions from SNP 111252 to 111852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,848 DEBUG Processing 331/475 atomic regions from SNP 99209 to 99809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,899 DEBUG Processing 303/1029 atomic regions from SNP 90801 to 91401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,981 DEBUG Processing 383/862 atomic regions from SNP 114756 to 115356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,053 DEBUG Processing 279/1139 atomic regions from SNP 83633 to 84233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,076 DEBUG Processing 156/653 atomic regions from SNP 46527 to 47127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,093 DEBUG Processing 332/475 atomic regions from SNP 99509 to 100109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,094 DEBUG Processing 372/904 atomic regions from SNP 111552 to 112152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,171 DEBUG Processing 304/1029 atomic regions from SNP 91101 to 91701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,215 DEBUG Processing 384/862 atomic regions from SNP 115056 to 115656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,315 DEBUG Processing 157/653 atomic regions from SNP 46827 to 47427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,326 DEBUG Processing 280/1139 atomic regions from SNP 83933 to 84533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,333 DEBUG Processing 333/475 atomic regions from SNP 99809 to 100409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,360 DEBUG Processing 373/904 atomic regions from SNP 111852 to 112452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,440 DEBUG Processing 305/1029 atomic regions from SNP 91401 to 92001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,451 DEBUG Processing 385/862 atomic regions from SNP 115356 to 115956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,552 DEBUG Processing 158/653 atomic regions from SNP 47127 to 47727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,569 DEBUG Processing 334/475 atomic regions from SNP 100109 to 100709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,599 DEBUG Processing 281/1139 atomic regions from SNP 84233 to 84833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,629 DEBUG Processing 374/904 atomic regions from SNP 112152 to 112752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,691 DEBUG Processing 386/862 atomic regions from SNP 115656 to 116256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,712 DEBUG Processing 306/1029 atomic regions from SNP 91701 to 92301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,787 DEBUG Processing 159/653 atomic regions from SNP 47427 to 48027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,802 DEBUG Processing 335/475 atomic regions from SNP 100409 to 101009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,871 DEBUG Processing 282/1139 atomic regions from SNP 84533 to 85133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,897 DEBUG Processing 375/904 atomic regions from SNP 112452 to 113052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,931 DEBUG Processing 387/862 atomic regions from SNP 115956 to 116556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,984 DEBUG Processing 307/1029 atomic regions from SNP 92001 to 92601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,025 DEBUG Processing 160/653 atomic regions from SNP 47727 to 48327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,035 DEBUG Processing 336/475 atomic regions from SNP 100709 to 101309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,141 DEBUG Processing 283/1139 atomic regions from SNP 84833 to 85433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,154 DEBUG Processing 376/904 atomic regions from SNP 112752 to 113352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,169 DEBUG Processing 388/862 atomic regions from SNP 116256 to 116856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,260 DEBUG Processing 308/1029 atomic regions from SNP 92301 to 92901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,267 DEBUG Processing 161/653 atomic regions from SNP 48027 to 48627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,275 DEBUG Processing 337/475 atomic regions from SNP 101009 to 101609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,402 DEBUG Processing 377/904 atomic regions from SNP 113052 to 113652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,412 DEBUG Processing 389/862 atomic regions from SNP 116556 to 117156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,416 DEBUG Processing 284/1139 atomic regions from SNP 85133 to 85733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,505 DEBUG Processing 162/653 atomic regions from SNP 48327 to 48927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,512 DEBUG Processing 338/475 atomic regions from SNP 101309 to 101909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,528 DEBUG Processing 309/1029 atomic regions from SNP 92601 to 93201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,650 DEBUG Processing 378/904 atomic regions from SNP 113352 to 113952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,654 DEBUG Processing 390/862 atomic regions from SNP 116856 to 117456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,693 DEBUG Processing 285/1139 atomic regions from SNP 85433 to 86033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,744 DEBUG Processing 163/653 atomic regions from SNP 48627 to 49227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,747 DEBUG Processing 339/475 atomic regions from SNP 101609 to 102209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,793 DEBUG Processing 310/1029 atomic regions from SNP 92901 to 93501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,896 DEBUG Processing 391/862 atomic regions from SNP 117156 to 117756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,899 DEBUG Processing 379/904 atomic regions from SNP 113652 to 114252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,983 DEBUG Processing 164/653 atomic regions from SNP 48927 to 49527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,985 DEBUG Processing 340/475 atomic regions from SNP 101909 to 102509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,998 DEBUG Processing 286/1139 atomic regions from SNP 85733 to 86333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,062 DEBUG Processing 311/1029 atomic regions from SNP 93201 to 93801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,139 DEBUG Processing 392/862 atomic regions from SNP 117456 to 118056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,150 DEBUG Processing 380/904 atomic regions from SNP 113952 to 114552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,222 DEBUG Processing 165/653 atomic regions from SNP 49227 to 49827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,223 DEBUG Processing 341/475 atomic regions from SNP 102209 to 102809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,285 DEBUG Processing 287/1139 atomic regions from SNP 86033 to 86633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,326 DEBUG Processing 312/1029 atomic regions from SNP 93501 to 94101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,385 DEBUG Processing 393/862 atomic regions from SNP 117756 to 118356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,401 DEBUG Processing 381/904 atomic regions from SNP 114252 to 114852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,459 DEBUG Processing 342/475 atomic regions from SNP 102509 to 103109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,460 DEBUG Processing 166/653 atomic regions from SNP 49527 to 50127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,567 DEBUG Processing 288/1139 atomic regions from SNP 86333 to 86933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,591 DEBUG Processing 313/1029 atomic regions from SNP 93801 to 94401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,631 DEBUG Processing 394/862 atomic regions from SNP 118056 to 118656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,654 DEBUG Processing 382/904 atomic regions from SNP 114552 to 115152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,702 DEBUG Processing 167/653 atomic regions from SNP 49827 to 50427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,708 DEBUG Processing 343/475 atomic regions from SNP 102809 to 103409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,842 DEBUG Processing 289/1139 atomic regions from SNP 86633 to 87233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,856 DEBUG Processing 314/1029 atomic regions from SNP 94101 to 94701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,872 DEBUG Processing 395/862 atomic regions from SNP 118356 to 118956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,905 DEBUG Processing 383/904 atomic regions from SNP 114852 to 115452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,939 DEBUG Processing 168/653 atomic regions from SNP 50127 to 50727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,960 DEBUG Processing 344/475 atomic regions from SNP 103109 to 103709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,111 DEBUG Processing 396/862 atomic regions from SNP 118656 to 119256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,116 DEBUG Processing 290/1139 atomic regions from SNP 86933 to 87533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,122 DEBUG Processing 315/1029 atomic regions from SNP 94401 to 95001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,153 DEBUG Processing 384/904 atomic regions from SNP 115152 to 115752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,178 DEBUG Processing 169/653 atomic regions from SNP 50427 to 51027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,209 DEBUG Processing 345/475 atomic regions from SNP 103409 to 104009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,352 DEBUG Processing 397/862 atomic regions from SNP 118956 to 119556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,391 DEBUG Processing 291/1139 atomic regions from SNP 87233 to 87833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,392 DEBUG Processing 316/1029 atomic regions from SNP 94701 to 95301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,403 DEBUG Processing 385/904 atomic regions from SNP 115452 to 116052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,416 DEBUG Processing 170/653 atomic regions from SNP 50727 to 51327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,462 DEBUG Processing 346/475 atomic regions from SNP 103709 to 104309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,593 DEBUG Processing 398/862 atomic regions from SNP 119256 to 119856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,657 DEBUG Processing 386/904 atomic regions from SNP 115752 to 116352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,658 DEBUG Processing 171/653 atomic regions from SNP 51027 to 51627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,667 DEBUG Processing 317/1029 atomic regions from SNP 95001 to 95601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,671 DEBUG Processing 292/1139 atomic regions from SNP 87533 to 88133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,712 DEBUG Processing 347/475 atomic regions from SNP 104009 to 104609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,840 DEBUG Processing 399/862 atomic regions from SNP 119556 to 120156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,900 DEBUG Processing 172/653 atomic regions from SNP 51327 to 51927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,915 DEBUG Processing 387/904 atomic regions from SNP 116052 to 116652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,940 DEBUG Processing 318/1029 atomic regions from SNP 95301 to 95901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,949 DEBUG Processing 348/475 atomic regions from SNP 104309 to 104909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,964 DEBUG Processing 293/1139 atomic regions from SNP 87833 to 88433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,104 DEBUG Processing 400/862 atomic regions from SNP 119856 to 120456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,145 DEBUG Processing 173/653 atomic regions from SNP 51627 to 52227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,172 DEBUG Processing 388/904 atomic regions from SNP 116352 to 116952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,189 DEBUG Processing 349/475 atomic regions from SNP 104609 to 105209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,215 DEBUG Processing 319/1029 atomic regions from SNP 95601 to 96201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,244 DEBUG Processing 294/1139 atomic regions from SNP 88133 to 88733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,342 DEBUG Processing 401/862 atomic regions from SNP 120156 to 120756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,390 DEBUG Processing 174/653 atomic regions from SNP 51927 to 52527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,425 DEBUG Processing 389/904 atomic regions from SNP 116652 to 117252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,432 DEBUG Processing 350/475 atomic regions from SNP 104909 to 105509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,488 DEBUG Processing 320/1029 atomic regions from SNP 95901 to 96501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,519 DEBUG Processing 295/1139 atomic regions from SNP 88433 to 89033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,598 DEBUG Processing 402/862 atomic regions from SNP 120456 to 121056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,629 DEBUG Processing 175/653 atomic regions from SNP 52227 to 52827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,674 DEBUG Processing 351/475 atomic regions from SNP 105209 to 105809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,678 DEBUG Processing 390/904 atomic regions from SNP 116952 to 117552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,758 DEBUG Processing 321/1029 atomic regions from SNP 96201 to 96801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,796 DEBUG Processing 296/1139 atomic regions from SNP 88733 to 89333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,863 DEBUG Processing 403/862 atomic regions from SNP 120756 to 121356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,866 DEBUG Processing 176/653 atomic regions from SNP 52527 to 53127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,914 DEBUG Processing 352/475 atomic regions from SNP 105509 to 106109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,931 DEBUG Processing 391/904 atomic regions from SNP 117252 to 117852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,047 DEBUG Processing 322/1029 atomic regions from SNP 96501 to 97101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,075 DEBUG Processing 297/1139 atomic regions from SNP 89033 to 89633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,109 DEBUG Processing 177/653 atomic regions from SNP 52827 to 53427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,126 DEBUG Processing 404/862 atomic regions from SNP 121056 to 121656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,157 DEBUG Processing 353/475 atomic regions from SNP 105809 to 106409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,185 DEBUG Processing 392/904 atomic regions from SNP 117552 to 118152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,351 DEBUG Processing 323/1029 atomic regions from SNP 96801 to 97401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,352 DEBUG Processing 178/653 atomic regions from SNP 53127 to 53727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,355 DEBUG Processing 298/1139 atomic regions from SNP 89333 to 89933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,373 DEBUG Processing 405/862 atomic regions from SNP 121356 to 121956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,410 DEBUG Processing 354/475 atomic regions from SNP 106109 to 106709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,436 DEBUG Processing 393/904 atomic regions from SNP 117852 to 118452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,604 DEBUG Processing 179/653 atomic regions from SNP 53427 to 54027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,629 DEBUG Processing 406/862 atomic regions from SNP 121656 to 122256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,637 DEBUG Processing 324/1029 atomic regions from SNP 97101 to 97701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,651 DEBUG Processing 299/1139 atomic regions from SNP 89633 to 90233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,661 DEBUG Processing 355/475 atomic regions from SNP 106409 to 107009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,693 DEBUG Processing 394/904 atomic regions from SNP 118152 to 118752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,847 DEBUG Processing 180/653 atomic regions from SNP 53727 to 54327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,901 DEBUG Processing 407/862 atomic regions from SNP 121956 to 122556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,905 DEBUG Processing 356/475 atomic regions from SNP 106709 to 107309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,914 DEBUG Processing 325/1029 atomic regions from SNP 97401 to 98001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,937 DEBUG Processing 300/1139 atomic regions from SNP 89933 to 90533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,948 DEBUG Processing 395/904 atomic regions from SNP 118452 to 119052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,082 DEBUG Processing 181/653 atomic regions from SNP 54027 to 54627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,143 DEBUG Processing 408/862 atomic regions from SNP 122256 to 122856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,168 DEBUG Processing 357/475 atomic regions from SNP 107009 to 107609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,181 DEBUG Processing 326/1029 atomic regions from SNP 97701 to 98301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,201 DEBUG Processing 396/904 atomic regions from SNP 118752 to 119352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,217 DEBUG Processing 301/1139 atomic regions from SNP 90233 to 90833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,312 DEBUG Processing 182/653 atomic regions from SNP 54327 to 54927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,379 DEBUG Processing 409/862 atomic regions from SNP 122556 to 123156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,435 DEBUG Processing 358/475 atomic regions from SNP 107309 to 107909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,449 DEBUG Processing 327/1029 atomic regions from SNP 98001 to 98601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,453 DEBUG Processing 397/904 atomic regions from SNP 119052 to 119652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,498 DEBUG Processing 302/1139 atomic regions from SNP 90533 to 91133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,549 DEBUG Processing 183/653 atomic regions from SNP 54627 to 55227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,608 DEBUG Processing 410/862 atomic regions from SNP 122856 to 123456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,697 DEBUG Processing 359/475 atomic regions from SNP 107609 to 108209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,705 DEBUG Processing 398/904 atomic regions from SNP 119352 to 119952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,720 DEBUG Processing 328/1029 atomic regions from SNP 98301 to 98901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,790 DEBUG Processing 184/653 atomic regions from SNP 54927 to 55527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,806 DEBUG Processing 303/1139 atomic regions from SNP 90833 to 91433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,843 DEBUG Processing 411/862 atomic regions from SNP 123156 to 123756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,942 DEBUG Processing 360/475 atomic regions from SNP 107909 to 108509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,951 DEBUG Processing 399/904 atomic regions from SNP 119652 to 120252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,986 DEBUG Processing 329/1029 atomic regions from SNP 98601 to 99201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,032 DEBUG Processing 185/653 atomic regions from SNP 55227 to 55827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,078 DEBUG Processing 412/862 atomic regions from SNP 123456 to 124056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,115 DEBUG Processing 304/1139 atomic regions from SNP 91133 to 91733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,189 DEBUG Processing 361/475 atomic regions from SNP 108209 to 108809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,198 DEBUG Processing 400/904 atomic regions from SNP 119952 to 120552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,252 DEBUG Processing 330/1029 atomic regions from SNP 98901 to 99501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,269 DEBUG Processing 186/653 atomic regions from SNP 55527 to 56127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,315 DEBUG Processing 413/862 atomic regions from SNP 123756 to 124356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,390 DEBUG Processing 305/1139 atomic regions from SNP 91433 to 92033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,449 DEBUG Processing 401/904 atomic regions from SNP 120252 to 120852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,455 DEBUG Processing 362/475 atomic regions from SNP 108509 to 109109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,509 DEBUG Processing 187/653 atomic regions from SNP 55827 to 56427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,524 DEBUG Processing 331/1029 atomic regions from SNP 99201 to 99801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,551 DEBUG Processing 414/862 atomic regions from SNP 124056 to 124656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,670 DEBUG Processing 306/1139 atomic regions from SNP 91733 to 92333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,707 DEBUG Processing 402/904 atomic regions from SNP 120552 to 121152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,731 DEBUG Processing 363/475 atomic regions from SNP 108809 to 109409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,752 DEBUG Processing 188/653 atomic regions from SNP 56127 to 56727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,790 DEBUG Processing 415/862 atomic regions from SNP 124356 to 124956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,795 DEBUG Processing 332/1029 atomic regions from SNP 99501 to 100101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,946 DEBUG Processing 307/1139 atomic regions from SNP 92033 to 92633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,966 DEBUG Processing 403/904 atomic regions from SNP 120852 to 121452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,988 DEBUG Processing 364/475 atomic regions from SNP 109109 to 109709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,000 DEBUG Processing 189/653 atomic regions from SNP 56427 to 57027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,030 DEBUG Processing 416/862 atomic regions from SNP 124656 to 125256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,064 DEBUG Processing 333/1029 atomic regions from SNP 99801 to 100401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,224 DEBUG Processing 404/904 atomic regions from SNP 121152 to 121752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,229 DEBUG Processing 308/1139 atomic regions from SNP 92333 to 92933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,240 DEBUG Processing 365/475 atomic regions from SNP 109409 to 110009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,254 DEBUG Processing 190/653 atomic regions from SNP 56727 to 57327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,278 DEBUG Processing 417/862 atomic regions from SNP 124956 to 125556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,330 DEBUG Processing 334/1029 atomic regions from SNP 100101 to 100701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,487 DEBUG Processing 405/904 atomic regions from SNP 121452 to 122052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,493 DEBUG Processing 366/475 atomic regions from SNP 109709 to 110309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,509 DEBUG Processing 191/653 atomic regions from SNP 57027 to 57627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,522 DEBUG Processing 309/1139 atomic regions from SNP 92633 to 93233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,534 DEBUG Processing 418/862 atomic regions from SNP 125256 to 125856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,599 DEBUG Processing 335/1029 atomic regions from SNP 100401 to 101001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,740 DEBUG Processing 367/475 atomic regions from SNP 110009 to 110609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,742 DEBUG Processing 406/904 atomic regions from SNP 121752 to 122352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,757 DEBUG Processing 192/653 atomic regions from SNP 57327 to 57927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,784 DEBUG Processing 419/862 atomic regions from SNP 125556 to 126156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,810 DEBUG Processing 310/1139 atomic regions from SNP 92933 to 93533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,861 DEBUG Processing 336/1029 atomic regions from SNP 100701 to 101301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,978 DEBUG Processing 368/475 atomic regions from SNP 110309 to 110909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,993 DEBUG Processing 407/904 atomic regions from SNP 122052 to 122652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,003 DEBUG Processing 193/653 atomic regions from SNP 57627 to 58227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,035 DEBUG Processing 420/862 atomic regions from SNP 125856 to 126456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,094 DEBUG Processing 311/1139 atomic regions from SNP 93233 to 93833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,127 DEBUG Processing 337/1029 atomic regions from SNP 101001 to 101601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,217 DEBUG Processing 369/475 atomic regions from SNP 110609 to 111209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,242 DEBUG Processing 408/904 atomic regions from SNP 122352 to 122952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,243 DEBUG Processing 194/653 atomic regions from SNP 57927 to 58527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,284 DEBUG Processing 421/862 atomic regions from SNP 126156 to 126756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,375 DEBUG Processing 312/1139 atomic regions from SNP 93533 to 94133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,397 DEBUG Processing 338/1029 atomic regions from SNP 101301 to 101901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,482 DEBUG Processing 370/475 atomic regions from SNP 110909 to 111509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,483 DEBUG Processing 195/653 atomic regions from SNP 58227 to 58827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,489 DEBUG Processing 409/904 atomic regions from SNP 122652 to 123252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,530 DEBUG Processing 422/862 atomic regions from SNP 126456 to 127056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,650 DEBUG Processing 313/1139 atomic regions from SNP 93833 to 94433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,674 DEBUG Processing 339/1029 atomic regions from SNP 101601 to 102201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,721 DEBUG Processing 196/653 atomic regions from SNP 58527 to 59127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,738 DEBUG Processing 410/904 atomic regions from SNP 122952 to 123552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,747 DEBUG Processing 371/475 atomic regions from SNP 111209 to 111809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,775 DEBUG Processing 423/862 atomic regions from SNP 126756 to 127356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,921 DEBUG Processing 314/1139 atomic regions from SNP 94133 to 94733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,941 DEBUG Processing 340/1029 atomic regions from SNP 101901 to 102501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,963 DEBUG Processing 197/653 atomic regions from SNP 58827 to 59427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,990 DEBUG Processing 411/904 atomic regions from SNP 123252 to 123852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,994 DEBUG Processing 372/475 atomic regions from SNP 111509 to 112109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,020 DEBUG Processing 424/862 atomic regions from SNP 127056 to 127656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,194 DEBUG Processing 315/1139 atomic regions from SNP 94433 to 95033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,209 DEBUG Processing 198/653 atomic regions from SNP 59127 to 59727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,218 DEBUG Processing 341/1029 atomic regions from SNP 102201 to 102801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,240 DEBUG Processing 373/475 atomic regions from SNP 111809 to 112409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,246 DEBUG Processing 412/904 atomic regions from SNP 123552 to 124152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,289 DEBUG Processing 425/862 atomic regions from SNP 127356 to 127956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,454 DEBUG Processing 199/653 atomic regions from SNP 59427 to 60027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,474 DEBUG Processing 316/1139 atomic regions from SNP 94733 to 95333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,491 DEBUG Processing 374/475 atomic regions from SNP 112109 to 112709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,498 DEBUG Processing 342/1029 atomic regions from SNP 102501 to 103101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,505 DEBUG Processing 413/904 atomic regions from SNP 123852 to 124452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,553 DEBUG Processing 426/862 atomic regions from SNP 127656 to 128256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,693 DEBUG Processing 200/653 atomic regions from SNP 59727 to 60327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,738 DEBUG Processing 375/475 atomic regions from SNP 112409 to 113009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,755 DEBUG Processing 317/1139 atomic regions from SNP 95033 to 95633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,765 DEBUG Processing 414/904 atomic regions from SNP 124152 to 124752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,779 DEBUG Processing 343/1029 atomic regions from SNP 102801 to 103401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,820 DEBUG Processing 427/862 atomic regions from SNP 127956 to 128556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,933 DEBUG Processing 201/653 atomic regions from SNP 60027 to 60627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,992 DEBUG Processing 376/475 atomic regions from SNP 112709 to 113309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,030 DEBUG Processing 415/904 atomic regions from SNP 124452 to 125052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,047 DEBUG Processing 318/1139 atomic regions from SNP 95333 to 95933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,063 DEBUG Processing 344/1029 atomic regions from SNP 103101 to 103701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,069 DEBUG Processing 428/862 atomic regions from SNP 128256 to 128856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,157 DEBUG Processing 202/653 atomic regions from SNP 60327 to 60927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,231 DEBUG Processing 377/475 atomic regions from SNP 113009 to 113609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,285 DEBUG Processing 416/904 atomic regions from SNP 124752 to 125352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,317 DEBUG Processing 429/862 atomic regions from SNP 128556 to 129156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,334 DEBUG Processing 319/1139 atomic regions from SNP 95633 to 96233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,338 DEBUG Processing 345/1029 atomic regions from SNP 103401 to 104001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,389 DEBUG Processing 203/653 atomic regions from SNP 60627 to 61227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,462 DEBUG Processing 378/475 atomic regions from SNP 113309 to 113909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,540 DEBUG Processing 417/904 atomic regions from SNP 125052 to 125652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,567 DEBUG Processing 430/862 atomic regions from SNP 128856 to 129456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,615 DEBUG Processing 346/1029 atomic regions from SNP 103701 to 104301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,619 DEBUG Processing 320/1139 atomic regions from SNP 95933 to 96533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,626 DEBUG Processing 204/653 atomic regions from SNP 60927 to 61527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,710 DEBUG Processing 379/475 atomic regions from SNP 113609 to 114209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,793 DEBUG Processing 418/904 atomic regions from SNP 125352 to 125952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,815 DEBUG Processing 431/862 atomic regions from SNP 129156 to 129756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,866 DEBUG Processing 205/653 atomic regions from SNP 61227 to 61827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,885 DEBUG Processing 347/1029 atomic regions from SNP 104001 to 104601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,900 DEBUG Processing 321/1139 atomic regions from SNP 96233 to 96833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,943 DEBUG Processing 380/475 atomic regions from SNP 113909 to 114509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,043 DEBUG Processing 419/904 atomic regions from SNP 125652 to 126252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,057 DEBUG Processing 432/862 atomic regions from SNP 129456 to 130056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,102 DEBUG Processing 206/653 atomic regions from SNP 61527 to 62127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,154 DEBUG Processing 348/1029 atomic regions from SNP 104301 to 104901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,177 DEBUG Processing 322/1139 atomic regions from SNP 96533 to 97133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,177 DEBUG Processing 381/475 atomic regions from SNP 114209 to 114809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,289 DEBUG Processing 420/904 atomic regions from SNP 125952 to 126552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,297 DEBUG Processing 433/862 atomic regions from SNP 129756 to 130356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,339 DEBUG Processing 207/653 atomic regions from SNP 61827 to 62427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,413 DEBUG Processing 382/475 atomic regions from SNP 114509 to 115109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,420 DEBUG Processing 349/1029 atomic regions from SNP 104601 to 105201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,465 DEBUG Processing 323/1139 atomic regions from SNP 96833 to 97433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,534 DEBUG Processing 434/862 atomic regions from SNP 130056 to 130656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,536 DEBUG Processing 421/904 atomic regions from SNP 126252 to 126852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,575 DEBUG Processing 208/653 atomic regions from SNP 62127 to 62727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,647 DEBUG Processing 383/475 atomic regions from SNP 114809 to 115409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,687 DEBUG Processing 350/1029 atomic regions from SNP 104901 to 105501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,771 DEBUG Processing 324/1139 atomic regions from SNP 97133 to 97733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,778 DEBUG Processing 435/862 atomic regions from SNP 130356 to 130956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,785 DEBUG Processing 422/904 atomic regions from SNP 126552 to 127152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,815 DEBUG Processing 209/653 atomic regions from SNP 62427 to 63027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,898 DEBUG Processing 384/475 atomic regions from SNP 115109 to 115709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,953 DEBUG Processing 351/1029 atomic regions from SNP 105201 to 105801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,023 DEBUG Processing 436/862 atomic regions from SNP 130656 to 131256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,038 DEBUG Processing 423/904 atomic regions from SNP 126852 to 127452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,055 DEBUG Processing 210/653 atomic regions from SNP 62727 to 63327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,067 DEBUG Processing 325/1139 atomic regions from SNP 97433 to 98033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,159 DEBUG Processing 385/475 atomic regions from SNP 115409 to 116009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,213 DEBUG Processing 352/1029 atomic regions from SNP 105501 to 106101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,266 DEBUG Processing 437/862 atomic regions from SNP 130956 to 131556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,291 DEBUG Processing 424/904 atomic regions from SNP 127152 to 127752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,304 DEBUG Processing 211/653 atomic regions from SNP 63027 to 63627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,374 DEBUG Processing 326/1139 atomic regions from SNP 97733 to 98333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,413 DEBUG Processing 386/475 atomic regions from SNP 115709 to 116309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,474 DEBUG Processing 353/1029 atomic regions from SNP 105801 to 106401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,505 DEBUG Processing 438/862 atomic regions from SNP 131256 to 131856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,540 DEBUG Processing 425/904 atomic regions from SNP 127452 to 128052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,545 DEBUG Processing 212/653 atomic regions from SNP 63327 to 63927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,649 DEBUG Processing 387/475 atomic regions from SNP 116009 to 116609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,671 DEBUG Processing 327/1139 atomic regions from SNP 98033 to 98633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,733 DEBUG Processing 354/1029 atomic regions from SNP 106101 to 106701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,740 DEBUG Processing 439/862 atomic regions from SNP 131556 to 132156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,783 DEBUG Processing 213/653 atomic regions from SNP 63627 to 64227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,789 DEBUG Processing 426/904 atomic regions from SNP 127752 to 128352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,888 DEBUG Processing 388/475 atomic regions from SNP 116309 to 116909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,973 DEBUG Processing 328/1139 atomic regions from SNP 98333 to 98933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,981 DEBUG Processing 440/862 atomic regions from SNP 131856 to 132456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,012 DEBUG Processing 355/1029 atomic regions from SNP 106401 to 107001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,021 DEBUG Processing 214/653 atomic regions from SNP 63927 to 64527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,040 DEBUG Processing 427/904 atomic regions from SNP 128052 to 128652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,119 DEBUG Processing 389/475 atomic regions from SNP 116609 to 117209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,222 DEBUG Processing 441/862 atomic regions from SNP 132156 to 132756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,268 DEBUG Processing 215/653 atomic regions from SNP 64227 to 64827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,281 DEBUG Processing 329/1139 atomic regions from SNP 98633 to 99233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,284 DEBUG Processing 356/1029 atomic regions from SNP 106701 to 107301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,296 DEBUG Processing 428/904 atomic regions from SNP 128352 to 128952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,353 DEBUG Processing 390/475 atomic regions from SNP 116909 to 117509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,460 DEBUG Processing 442/862 atomic regions from SNP 132456 to 133056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,512 DEBUG Processing 216/653 atomic regions from SNP 64527 to 65127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,555 DEBUG Processing 429/904 atomic regions from SNP 128652 to 129252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,562 DEBUG Processing 357/1029 atomic regions from SNP 107001 to 107601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,591 DEBUG Processing 391/475 atomic regions from SNP 117209 to 117809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,595 DEBUG Processing 330/1139 atomic regions from SNP 98933 to 99533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,690 DEBUG Processing 443/862 atomic regions from SNP 132756 to 133356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,753 DEBUG Processing 217/653 atomic regions from SNP 64827 to 65427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,811 DEBUG Processing 430/904 atomic regions from SNP 128952 to 129552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,834 DEBUG Processing 392/475 atomic regions from SNP 117509 to 118109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,843 DEBUG Processing 358/1029 atomic regions from SNP 107301 to 107901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,902 DEBUG Processing 331/1139 atomic regions from SNP 99233 to 99833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,918 DEBUG Processing 444/862 atomic regions from SNP 133056 to 133656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,988 DEBUG Processing 218/653 atomic regions from SNP 65127 to 65727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,071 DEBUG Processing 431/904 atomic regions from SNP 129252 to 129852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,080 DEBUG Processing 393/475 atomic regions from SNP 117809 to 118409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,120 DEBUG Processing 359/1029 atomic regions from SNP 107601 to 108201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,158 DEBUG Processing 445/862 atomic regions from SNP 133356 to 133956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,200 DEBUG Processing 332/1139 atomic regions from SNP 99533 to 100133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,230 DEBUG Processing 219/653 atomic regions from SNP 65427 to 66027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,334 DEBUG Processing 394/475 atomic regions from SNP 118109 to 118709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,338 DEBUG Processing 432/904 atomic regions from SNP 129552 to 130152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,400 DEBUG Processing 446/862 atomic regions from SNP 133656 to 134256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,401 DEBUG Processing 360/1029 atomic regions from SNP 107901 to 108501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,459 DEBUG Processing 220/653 atomic regions from SNP 65727 to 66327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,498 DEBUG Processing 333/1139 atomic regions from SNP 99833 to 100433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,588 DEBUG Processing 395/475 atomic regions from SNP 118409 to 119009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,617 DEBUG Processing 433/904 atomic regions from SNP 129852 to 130452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,658 DEBUG Processing 447/862 atomic regions from SNP 133956 to 134556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,687 DEBUG Processing 361/1029 atomic regions from SNP 108201 to 108801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,706 DEBUG Processing 221/653 atomic regions from SNP 66027 to 66627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,808 DEBUG Processing 334/1139 atomic regions from SNP 100133 to 100733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,837 DEBUG Processing 396/475 atomic regions from SNP 118709 to 119309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,897 DEBUG Processing 434/904 atomic regions from SNP 130152 to 130752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,904 DEBUG Processing 448/862 atomic regions from SNP 134256 to 134856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,937 DEBUG Processing 222/653 atomic regions from SNP 66327 to 66927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,952 DEBUG Processing 362/1029 atomic regions from SNP 108501 to 109101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,079 DEBUG Processing 397/475 atomic regions from SNP 119009 to 119609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,088 DEBUG Processing 335/1139 atomic regions from SNP 100433 to 101033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,153 DEBUG Processing 449/862 atomic regions from SNP 134556 to 135156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,155 DEBUG Processing 435/904 atomic regions from SNP 130452 to 131052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,178 DEBUG Processing 223/653 atomic regions from SNP 66627 to 67227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,220 DEBUG Processing 363/1029 atomic regions from SNP 108801 to 109401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,318 DEBUG Processing 398/475 atomic regions from SNP 119309 to 119909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,368 DEBUG Processing 336/1139 atomic regions from SNP 100733 to 101333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,401 DEBUG Processing 450/862 atomic regions from SNP 134856 to 135456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,417 DEBUG Processing 224/653 atomic regions from SNP 66927 to 67527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,426 DEBUG Processing 436/904 atomic regions from SNP 130752 to 131352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,484 DEBUG Processing 364/1029 atomic regions from SNP 109101 to 109701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,551 DEBUG Processing 399/475 atomic regions from SNP 119609 to 120209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,662 DEBUG Processing 451/862 atomic regions from SNP 135156 to 135756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,667 DEBUG Processing 337/1139 atomic regions from SNP 101033 to 101633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,678 DEBUG Processing 225/653 atomic regions from SNP 67227 to 67827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,694 DEBUG Processing 437/904 atomic regions from SNP 131052 to 131652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,760 DEBUG Processing 365/1029 atomic regions from SNP 109401 to 110001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,792 DEBUG Processing 400/475 atomic regions from SNP 119909 to 120509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,905 DEBUG Processing 452/862 atomic regions from SNP 135456 to 136056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,918 DEBUG Processing 226/653 atomic regions from SNP 67527 to 68127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,945 DEBUG Processing 438/904 atomic regions from SNP 131352 to 131952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,947 DEBUG Processing 338/1139 atomic regions from SNP 101333 to 101933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,026 DEBUG Processing 401/475 atomic regions from SNP 120209 to 120809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,030 DEBUG Processing 366/1029 atomic regions from SNP 109701 to 110301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,145 DEBUG Processing 453/862 atomic regions from SNP 135756 to 136356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,157 DEBUG Processing 227/653 atomic regions from SNP 67827 to 68427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,190 DEBUG Processing 439/904 atomic regions from SNP 131652 to 132252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,220 DEBUG Processing 339/1139 atomic regions from SNP 101633 to 102233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,260 DEBUG Processing 402/475 atomic regions from SNP 120509 to 121109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,296 DEBUG Processing 367/1029 atomic regions from SNP 110001 to 110601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,388 DEBUG Processing 454/862 atomic regions from SNP 136056 to 136656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,395 DEBUG Processing 228/653 atomic regions from SNP 68127 to 68727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,435 DEBUG Processing 440/904 atomic regions from SNP 131952 to 132552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,490 DEBUG Processing 403/475 atomic regions from SNP 120809 to 121409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,495 DEBUG Processing 340/1139 atomic regions from SNP 101933 to 102533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,569 DEBUG Processing 368/1029 atomic regions from SNP 110301 to 110901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,639 DEBUG Processing 455/862 atomic regions from SNP 136356 to 136956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,646 DEBUG Processing 229/653 atomic regions from SNP 68427 to 69027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,683 DEBUG Processing 441/904 atomic regions from SNP 132252 to 132852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,720 DEBUG Processing 404/475 atomic regions from SNP 121109 to 121709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,763 DEBUG Processing 341/1139 atomic regions from SNP 102233 to 102833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,844 DEBUG Processing 369/1029 atomic regions from SNP 110601 to 111201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,892 DEBUG Processing 456/862 atomic regions from SNP 136656 to 137256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,893 DEBUG Processing 230/653 atomic regions from SNP 68727 to 69327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,934 DEBUG Processing 442/904 atomic regions from SNP 132552 to 133152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,952 DEBUG Processing 405/475 atomic regions from SNP 121409 to 122009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,030 DEBUG Processing 342/1139 atomic regions from SNP 102533 to 103133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,121 DEBUG Processing 370/1029 atomic regions from SNP 110901 to 111501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,142 DEBUG Processing 231/653 atomic regions from SNP 69027 to 69627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,143 DEBUG Processing 457/862 atomic regions from SNP 136956 to 137556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,190 DEBUG Processing 443/904 atomic regions from SNP 132852 to 133452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,190 DEBUG Processing 406/475 atomic regions from SNP 121709 to 122309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,298 DEBUG Processing 343/1139 atomic regions from SNP 102833 to 103433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,393 DEBUG Processing 232/653 atomic regions from SNP 69327 to 69927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,394 DEBUG Processing 458/862 atomic regions from SNP 137256 to 137856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,397 DEBUG Processing 371/1029 atomic regions from SNP 111201 to 111801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,435 DEBUG Processing 407/475 atomic regions from SNP 122009 to 122609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,447 DEBUG Processing 444/904 atomic regions from SNP 133152 to 133752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,566 DEBUG Processing 344/1139 atomic regions from SNP 103133 to 103733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,642 DEBUG Processing 233/653 atomic regions from SNP 69627 to 70227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,642 DEBUG Processing 459/862 atomic regions from SNP 137556 to 138156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,676 DEBUG Processing 372/1029 atomic regions from SNP 111501 to 112101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,678 DEBUG Processing 408/475 atomic regions from SNP 122309 to 122909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,704 DEBUG Processing 445/904 atomic regions from SNP 133452 to 134052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,835 DEBUG Processing 345/1139 atomic regions from SNP 103433 to 104033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,886 DEBUG Processing 234/653 atomic regions from SNP 69927 to 70527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,888 DEBUG Processing 460/862 atomic regions from SNP 137856 to 138456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,926 DEBUG Processing 409/475 atomic regions from SNP 122609 to 123209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,957 DEBUG Processing 373/1029 atomic regions from SNP 111801 to 112401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,965 DEBUG Processing 446/904 atomic regions from SNP 133752 to 134352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,114 DEBUG Processing 346/1139 atomic regions from SNP 103733 to 104333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,133 DEBUG Processing 235/653 atomic regions from SNP 70227 to 70827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,136 DEBUG Processing 461/862 atomic regions from SNP 138156 to 138756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,178 DEBUG Processing 410/475 atomic regions from SNP 122909 to 123509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,228 DEBUG Processing 447/904 atomic regions from SNP 134052 to 134652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,241 DEBUG Processing 374/1029 atomic regions from SNP 112101 to 112701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,370 DEBUG Processing 236/653 atomic regions from SNP 70527 to 71127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,377 DEBUG Processing 462/862 atomic regions from SNP 138456 to 139056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,386 DEBUG Processing 347/1139 atomic regions from SNP 104033 to 104633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,460 DEBUG Processing 411/475 atomic regions from SNP 123209 to 123809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,481 DEBUG Processing 448/904 atomic regions from SNP 134352 to 134952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,515 DEBUG Processing 375/1029 atomic regions from SNP 112401 to 113001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,611 DEBUG Processing 237/653 atomic regions from SNP 70827 to 71427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,619 DEBUG Processing 463/862 atomic regions from SNP 138756 to 139356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,666 DEBUG Processing 348/1139 atomic regions from SNP 104333 to 104933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,706 DEBUG Processing 412/475 atomic regions from SNP 123509 to 124109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,734 DEBUG Processing 449/904 atomic regions from SNP 134652 to 135252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,789 DEBUG Processing 376/1029 atomic regions from SNP 112701 to 113301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,847 DEBUG Processing 238/653 atomic regions from SNP 71127 to 71727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,859 DEBUG Processing 464/862 atomic regions from SNP 139056 to 139656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,945 DEBUG Processing 349/1139 atomic regions from SNP 104633 to 105233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,946 DEBUG Processing 413/475 atomic regions from SNP 123809 to 124409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,986 DEBUG Processing 450/904 atomic regions from SNP 134952 to 135552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,059 DEBUG Processing 377/1029 atomic regions from SNP 113001 to 113601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,087 DEBUG Processing 239/653 atomic regions from SNP 71427 to 72027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,099 DEBUG Processing 465/862 atomic regions from SNP 139356 to 139956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,190 DEBUG Processing 414/475 atomic regions from SNP 124109 to 124709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,237 DEBUG Processing 451/904 atomic regions from SNP 135252 to 135852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,255 DEBUG Processing 350/1139 atomic regions from SNP 104933 to 105533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,323 DEBUG Processing 240/653 atomic regions from SNP 71727 to 72327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,325 DEBUG Processing 378/1029 atomic regions from SNP 113301 to 113901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,340 DEBUG Processing 466/862 atomic regions from SNP 139656 to 140256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,427 DEBUG Processing 415/475 atomic regions from SNP 124409 to 125009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,485 DEBUG Processing 452/904 atomic regions from SNP 135552 to 136152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,556 DEBUG Processing 351/1139 atomic regions from SNP 105233 to 105833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,564 DEBUG Processing 241/653 atomic regions from SNP 72027 to 72627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,584 DEBUG Processing 467/862 atomic regions from SNP 139956 to 140556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,598 DEBUG Processing 379/1029 atomic regions from SNP 113601 to 114201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,668 DEBUG Processing 416/475 atomic regions from SNP 124709 to 125309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,730 DEBUG Processing 453/904 atomic regions from SNP 135852 to 136452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,802 DEBUG Processing 242/653 atomic regions from SNP 72327 to 72927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,829 DEBUG Processing 468/862 atomic regions from SNP 140256 to 140856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,848 DEBUG Processing 352/1139 atomic regions from SNP 105533 to 106133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,874 DEBUG Processing 380/1029 atomic regions from SNP 113901 to 114501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,910 DEBUG Processing 417/475 atomic regions from SNP 125009 to 125609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,973 DEBUG Processing 454/904 atomic regions from SNP 136152 to 136752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,037 DEBUG Processing 243/653 atomic regions from SNP 72627 to 73227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,072 DEBUG Processing 469/862 atomic regions from SNP 140556 to 141156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,156 DEBUG Processing 353/1139 atomic regions from SNP 105833 to 106433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,160 DEBUG Processing 418/475 atomic regions from SNP 125309 to 125909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,176 DEBUG Processing 381/1029 atomic regions from SNP 114201 to 114801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,221 DEBUG Processing 455/904 atomic regions from SNP 136452 to 137052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,264 DEBUG Processing 244/653 atomic regions from SNP 72927 to 73527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,306 DEBUG Processing 470/862 atomic regions from SNP 140856 to 141456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,409 DEBUG Processing 419/475 atomic regions from SNP 125609 to 126209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,450 DEBUG Processing 354/1139 atomic regions from SNP 106133 to 106733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,477 DEBUG Processing 456/904 atomic regions from SNP 136752 to 137352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,503 DEBUG Processing 245/653 atomic regions from SNP 73227 to 73827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,523 DEBUG Processing 382/1029 atomic regions from SNP 114501 to 115101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,544 DEBUG Processing 471/862 atomic regions from SNP 141156 to 141756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,653 DEBUG Processing 420/475 atomic regions from SNP 125909 to 126509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,734 DEBUG Processing 457/904 atomic regions from SNP 137052 to 137652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,739 DEBUG Processing 355/1139 atomic regions from SNP 106433 to 107033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,750 DEBUG Processing 246/653 atomic regions from SNP 73527 to 74127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,784 DEBUG Processing 472/862 atomic regions from SNP 141456 to 142056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,799 DEBUG Processing 383/1029 atomic regions from SNP 114801 to 115401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,892 DEBUG Processing 421/475 atomic regions from SNP 126209 to 126809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,991 DEBUG Processing 458/904 atomic regions from SNP 137352 to 137952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,997 DEBUG Processing 247/653 atomic regions from SNP 73827 to 74427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,026 DEBUG Processing 356/1139 atomic regions from SNP 106733 to 107333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,032 DEBUG Processing 473/862 atomic regions from SNP 141756 to 142356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,078 DEBUG Processing 384/1029 atomic regions from SNP 115101 to 115701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,133 DEBUG Processing 422/475 atomic regions from SNP 126509 to 127109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,242 DEBUG Processing 459/904 atomic regions from SNP 137652 to 138252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,258 DEBUG Processing 248/653 atomic regions from SNP 74127 to 74727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,283 DEBUG Processing 474/862 atomic regions from SNP 142056 to 142656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,309 DEBUG Processing 357/1139 atomic regions from SNP 107033 to 107633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,358 DEBUG Processing 385/1029 atomic regions from SNP 115401 to 116001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,372 DEBUG Processing 423/475 atomic regions from SNP 126809 to 127409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,511 DEBUG Processing 460/904 atomic regions from SNP 137952 to 138552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,512 DEBUG Processing 249/653 atomic regions from SNP 74427 to 75027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,530 DEBUG Processing 475/862 atomic regions from SNP 142356 to 142956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,604 DEBUG Processing 358/1139 atomic regions from SNP 107333 to 107933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,620 DEBUG Processing 424/475 atomic regions from SNP 127109 to 127709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,637 DEBUG Processing 386/1029 atomic regions from SNP 115701 to 116301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,754 DEBUG Processing 250/653 atomic regions from SNP 74727 to 75327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,771 DEBUG Processing 476/862 atomic regions from SNP 142656 to 143256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,784 DEBUG Processing 461/904 atomic regions from SNP 138252 to 138852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,870 DEBUG Processing 425/475 atomic regions from SNP 127409 to 128009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,917 DEBUG Processing 387/1029 atomic regions from SNP 116001 to 116601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,917 DEBUG Processing 359/1139 atomic regions from SNP 107633 to 108233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,993 DEBUG Processing 251/653 atomic regions from SNP 75027 to 75627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,010 DEBUG Processing 477/862 atomic regions from SNP 142956 to 143556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,048 DEBUG Processing 462/904 atomic regions from SNP 138552 to 139152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,118 DEBUG Processing 426/475 atomic regions from SNP 127709 to 128309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,196 DEBUG Processing 388/1029 atomic regions from SNP 116301 to 116901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,204 DEBUG Processing 360/1139 atomic regions from SNP 107933 to 108533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,235 DEBUG Processing 252/653 atomic regions from SNP 75327 to 75927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,251 DEBUG Processing 478/862 atomic regions from SNP 143256 to 143856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,322 DEBUG Processing 463/904 atomic regions from SNP 138852 to 139452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,358 DEBUG Processing 427/475 atomic regions from SNP 128009 to 128609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,473 DEBUG Processing 389/1029 atomic regions from SNP 116601 to 117201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,480 DEBUG Processing 253/653 atomic regions from SNP 75627 to 76227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,496 DEBUG Processing 479/862 atomic regions from SNP 143556 to 144156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,502 DEBUG Processing 361/1139 atomic regions from SNP 108233 to 108833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,591 DEBUG Processing 464/904 atomic regions from SNP 139152 to 139752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,598 DEBUG Processing 428/475 atomic regions from SNP 128309 to 128909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,725 DEBUG Processing 254/653 atomic regions from SNP 75927 to 76527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,743 DEBUG Processing 480/862 atomic regions from SNP 143856 to 144456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,751 DEBUG Processing 390/1029 atomic regions from SNP 116901 to 117501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,819 DEBUG Processing 362/1139 atomic regions from SNP 108533 to 109133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,841 DEBUG Processing 429/475 atomic regions from SNP 128609 to 129209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,855 DEBUG Processing 465/904 atomic regions from SNP 139452 to 140052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,968 DEBUG Processing 255/653 atomic regions from SNP 76227 to 76827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,993 DEBUG Processing 481/862 atomic regions from SNP 144156 to 144756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,038 DEBUG Processing 391/1029 atomic regions from SNP 117201 to 117801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,088 DEBUG Processing 430/475 atomic regions from SNP 128909 to 129509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,114 DEBUG Processing 466/904 atomic regions from SNP 139752 to 140352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,135 DEBUG Processing 363/1139 atomic regions from SNP 108833 to 109433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,207 DEBUG Processing 256/653 atomic regions from SNP 76527 to 77127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,233 DEBUG Processing 482/862 atomic regions from SNP 144456 to 145056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,317 DEBUG Processing 392/1029 atomic regions from SNP 117501 to 118101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,337 DEBUG Processing 431/475 atomic regions from SNP 129209 to 129809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,376 DEBUG Processing 467/904 atomic regions from SNP 140052 to 140652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,433 DEBUG Processing 364/1139 atomic regions from SNP 109133 to 109733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,448 DEBUG Processing 257/653 atomic regions from SNP 76827 to 77427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,477 DEBUG Processing 483/862 atomic regions from SNP 144756 to 145356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,589 DEBUG Processing 432/475 atomic regions from SNP 129509 to 130109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,595 DEBUG Processing 393/1029 atomic regions from SNP 117801 to 118401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,640 DEBUG Processing 468/904 atomic regions from SNP 140352 to 140952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,691 DEBUG Processing 258/653 atomic regions from SNP 77127 to 77727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,718 DEBUG Processing 484/862 atomic regions from SNP 145056 to 145656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,744 DEBUG Processing 365/1139 atomic regions from SNP 109433 to 110033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,838 DEBUG Processing 433/475 atomic regions from SNP 129809 to 130409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,876 DEBUG Processing 394/1029 atomic regions from SNP 118101 to 118701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,904 DEBUG Processing 469/904 atomic regions from SNP 140652 to 141252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,942 DEBUG Processing 259/653 atomic regions from SNP 77427 to 78027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,961 DEBUG Processing 485/862 atomic regions from SNP 145356 to 145956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,033 DEBUG Processing 366/1139 atomic regions from SNP 109733 to 110333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,080 DEBUG Processing 434/475 atomic regions from SNP 130109 to 130709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,157 DEBUG Processing 395/1029 atomic regions from SNP 118401 to 119001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,186 DEBUG Processing 470/904 atomic regions from SNP 140952 to 141552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,192 DEBUG Processing 260/653 atomic regions from SNP 77727 to 78327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,211 DEBUG Processing 486/862 atomic regions from SNP 145656 to 146256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,309 DEBUG Processing 367/1139 atomic regions from SNP 110033 to 110633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,315 DEBUG Processing 435/475 atomic regions from SNP 130409 to 131009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,438 DEBUG Processing 396/1029 atomic regions from SNP 118701 to 119301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,443 DEBUG Processing 261/653 atomic regions from SNP 78027 to 78627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,462 DEBUG Processing 487/862 atomic regions from SNP 145956 to 146556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,473 DEBUG Processing 471/904 atomic regions from SNP 141252 to 141852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,553 DEBUG Processing 436/475 atomic regions from SNP 130709 to 131309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,589 DEBUG Processing 368/1139 atomic regions from SNP 110333 to 110933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,690 DEBUG Processing 262/653 atomic regions from SNP 78327 to 78927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,717 DEBUG Processing 488/862 atomic regions from SNP 146256 to 146856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,720 DEBUG Processing 397/1029 atomic regions from SNP 119001 to 119601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,769 DEBUG Processing 472/904 atomic regions from SNP 141552 to 142152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,796 DEBUG Processing 437/475 atomic regions from SNP 131009 to 131609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,872 DEBUG Processing 369/1139 atomic regions from SNP 110633 to 111233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,939 DEBUG Processing 263/653 atomic regions from SNP 78627 to 79227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,974 DEBUG Processing 489/862 atomic regions from SNP 146556 to 147156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,007 DEBUG Processing 398/1029 atomic regions from SNP 119301 to 119901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,051 DEBUG Processing 438/475 atomic regions from SNP 131309 to 131909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,066 DEBUG Processing 473/904 atomic regions from SNP 141852 to 142452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,151 DEBUG Processing 370/1139 atomic regions from SNP 110933 to 111533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,172 DEBUG Processing 264/653 atomic regions from SNP 78927 to 79527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,218 DEBUG Processing 490/862 atomic regions from SNP 146856 to 147456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,305 DEBUG Processing 439/475 atomic regions from SNP 131609 to 132209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,313 DEBUG Processing 399/1029 atomic regions from SNP 119601 to 120201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,358 DEBUG Processing 474/904 atomic regions from SNP 142152 to 142752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,413 DEBUG Processing 265/653 atomic regions from SNP 79227 to 79827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,433 DEBUG Processing 371/1139 atomic regions from SNP 111233 to 111833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,477 DEBUG Processing 491/862 atomic regions from SNP 147156 to 147756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,561 DEBUG Processing 440/475 atomic regions from SNP 131909 to 132509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,619 DEBUG Processing 400/1029 atomic regions from SNP 119901 to 120501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,629 DEBUG Processing 475/904 atomic regions from SNP 142452 to 143052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,658 DEBUG Processing 266/653 atomic regions from SNP 79527 to 80127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,708 DEBUG Processing 372/1139 atomic regions from SNP 111533 to 112133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,711 DEBUG Processing 492/862 atomic regions from SNP 147456 to 148056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,801 DEBUG Processing 441/475 atomic regions from SNP 132209 to 132809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,905 DEBUG Processing 401/1029 atomic regions from SNP 120201 to 120801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,909 DEBUG Processing 267/653 atomic regions from SNP 79827 to 80427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,914 DEBUG Processing 476/904 atomic regions from SNP 142752 to 143352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,955 DEBUG Processing 493/862 atomic regions from SNP 147756 to 148356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,990 DEBUG Processing 373/1139 atomic regions from SNP 111833 to 112433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,034 DEBUG Processing 442/475 atomic regions from SNP 132509 to 133109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,158 DEBUG Processing 268/653 atomic regions from SNP 80127 to 80727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,190 DEBUG Processing 402/1029 atomic regions from SNP 120501 to 121101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,194 DEBUG Processing 477/904 atomic regions from SNP 143052 to 143652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,212 DEBUG Processing 494/862 atomic regions from SNP 148056 to 148656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,276 DEBUG Processing 443/475 atomic regions from SNP 132809 to 133409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,280 DEBUG Processing 374/1139 atomic regions from SNP 112133 to 112733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,398 DEBUG Processing 269/653 atomic regions from SNP 80427 to 81027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,461 DEBUG Processing 495/862 atomic regions from SNP 148356 to 148956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,466 DEBUG Processing 403/1029 atomic regions from SNP 120801 to 121401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,470 DEBUG Processing 478/904 atomic regions from SNP 143352 to 143952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,521 DEBUG Processing 444/475 atomic regions from SNP 133109 to 133709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,588 DEBUG Processing 375/1139 atomic regions from SNP 112433 to 113033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,635 DEBUG Processing 270/653 atomic regions from SNP 80727 to 81327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,706 DEBUG Processing 496/862 atomic regions from SNP 148656 to 149256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,731 DEBUG Processing 479/904 atomic regions from SNP 143652 to 144252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,739 DEBUG Processing 404/1029 atomic regions from SNP 121101 to 121701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,767 DEBUG Processing 445/475 atomic regions from SNP 133409 to 134009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,868 DEBUG Processing 376/1139 atomic regions from SNP 112733 to 113333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,878 DEBUG Processing 271/653 atomic regions from SNP 81027 to 81627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,948 DEBUG Processing 497/862 atomic regions from SNP 148956 to 149556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,991 DEBUG Processing 480/904 atomic regions from SNP 143952 to 144552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,010 DEBUG Processing 446/475 atomic regions from SNP 133709 to 134309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,017 DEBUG Processing 405/1029 atomic regions from SNP 121401 to 122001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,119 DEBUG Processing 272/653 atomic regions from SNP 81327 to 81927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,149 DEBUG Processing 377/1139 atomic regions from SNP 113033 to 113633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,193 DEBUG Processing 498/862 atomic regions from SNP 149256 to 149856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,246 DEBUG Processing 481/904 atomic regions from SNP 144252 to 144852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,256 DEBUG Processing 447/475 atomic regions from SNP 134009 to 134609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,305 DEBUG Processing 406/1029 atomic regions from SNP 121701 to 122301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,360 DEBUG Processing 273/653 atomic regions from SNP 81627 to 82227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,424 DEBUG Processing 378/1139 atomic regions from SNP 113333 to 113933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,436 DEBUG Processing 499/862 atomic regions from SNP 149556 to 150156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,502 DEBUG Processing 448/475 atomic regions from SNP 134309 to 134909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,523 DEBUG Processing 482/904 atomic regions from SNP 144552 to 145152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,601 DEBUG Processing 274/653 atomic regions from SNP 81927 to 82527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,601 DEBUG Processing 407/1029 atomic regions from SNP 122001 to 122601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,679 DEBUG Processing 500/862 atomic regions from SNP 149856 to 150456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,702 DEBUG Processing 379/1139 atomic regions from SNP 113633 to 114233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,749 DEBUG Processing 449/475 atomic regions from SNP 134609 to 135209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,802 DEBUG Processing 483/904 atomic regions from SNP 144852 to 145452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,853 DEBUG Processing 275/653 atomic regions from SNP 82227 to 82827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,887 DEBUG Processing 408/1029 atomic regions from SNP 122301 to 122901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,926 DEBUG Processing 501/862 atomic regions from SNP 150156 to 150756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,981 DEBUG Processing 380/1139 atomic regions from SNP 113933 to 114533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,992 DEBUG Processing 450/475 atomic regions from SNP 134909 to 135509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,095 DEBUG Processing 484/904 atomic regions from SNP 145152 to 145752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,099 DEBUG Processing 276/653 atomic regions from SNP 82527 to 83127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,175 DEBUG Processing 502/862 atomic regions from SNP 150456 to 151056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,185 DEBUG Processing 409/1029 atomic regions from SNP 122601 to 123201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,231 DEBUG Processing 451/475 atomic regions from SNP 135209 to 135809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,260 DEBUG Processing 381/1139 atomic regions from SNP 114233 to 114833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,346 DEBUG Processing 277/653 atomic regions from SNP 82827 to 83427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,390 DEBUG Processing 485/904 atomic regions from SNP 145452 to 146052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,424 DEBUG Processing 503/862 atomic regions from SNP 150756 to 151356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,473 DEBUG Processing 452/475 atomic regions from SNP 135509 to 136109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,476 DEBUG Processing 410/1029 atomic regions from SNP 122901 to 123501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,541 DEBUG Processing 382/1139 atomic regions from SNP 114533 to 115133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,587 DEBUG Processing 278/653 atomic regions from SNP 83127 to 83727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,672 DEBUG Processing 504/862 atomic regions from SNP 151056 to 151656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,682 DEBUG Processing 486/904 atomic regions from SNP 145752 to 146352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,718 DEBUG Processing 453/475 atomic regions from SNP 135809 to 136409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,753 DEBUG Processing 411/1029 atomic regions from SNP 123201 to 123801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,823 DEBUG Processing 383/1139 atomic regions from SNP 114833 to 115433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,830 DEBUG Processing 279/653 atomic regions from SNP 83427 to 84027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,920 DEBUG Processing 505/862 atomic regions from SNP 151356 to 151956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,963 DEBUG Processing 454/475 atomic regions from SNP 136109 to 136709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,980 DEBUG Processing 487/904 atomic regions from SNP 146052 to 146652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,032 DEBUG Processing 412/1029 atomic regions from SNP 123501 to 124101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,072 DEBUG Processing 280/653 atomic regions from SNP 83727 to 84327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,108 DEBUG Processing 384/1139 atomic regions from SNP 115133 to 115733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,165 DEBUG Processing 506/862 atomic regions from SNP 151656 to 152256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,203 DEBUG Processing 455/475 atomic regions from SNP 136409 to 137009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,269 DEBUG Processing 488/904 atomic regions from SNP 146352 to 146952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,303 DEBUG Processing 413/1029 atomic regions from SNP 123801 to 124401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,314 DEBUG Processing 281/653 atomic regions from SNP 84027 to 84627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,389 DEBUG Processing 385/1139 atomic regions from SNP 115433 to 116033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,414 DEBUG Processing 507/862 atomic regions from SNP 151956 to 152556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,443 DEBUG Processing 456/475 atomic regions from SNP 136709 to 137309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,552 DEBUG Processing 282/653 atomic regions from SNP 84327 to 84927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,554 DEBUG Processing 489/904 atomic regions from SNP 146652 to 147252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,577 DEBUG Processing 414/1029 atomic regions from SNP 124101 to 124701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,665 DEBUG Processing 508/862 atomic regions from SNP 152256 to 152856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,670 DEBUG Processing 386/1139 atomic regions from SNP 115733 to 116333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,684 DEBUG Processing 457/475 atomic regions from SNP 137009 to 137609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,790 DEBUG Processing 283/653 atomic regions from SNP 84627 to 85227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,838 DEBUG Processing 490/904 atomic regions from SNP 146952 to 147552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,851 DEBUG Processing 415/1029 atomic regions from SNP 124401 to 125001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,913 DEBUG Processing 509/862 atomic regions from SNP 152556 to 153156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,925 DEBUG Processing 458/475 atomic regions from SNP 137309 to 137909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,952 DEBUG Processing 387/1139 atomic regions from SNP 116033 to 116633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,030 DEBUG Processing 284/653 atomic regions from SNP 84927 to 85527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,125 DEBUG Processing 491/904 atomic regions from SNP 147252 to 147852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,125 DEBUG Processing 416/1029 atomic regions from SNP 124701 to 125301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,162 DEBUG Processing 510/862 atomic regions from SNP 152856 to 153456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,170 DEBUG Processing 459/475 atomic regions from SNP 137609 to 138209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,230 DEBUG Processing 388/1139 atomic regions from SNP 116333 to 116933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,271 DEBUG Processing 285/653 atomic regions from SNP 85227 to 85827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,397 DEBUG Processing 417/1029 atomic regions from SNP 125001 to 125601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,408 DEBUG Processing 460/475 atomic regions from SNP 137909 to 138509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,410 DEBUG Processing 492/904 atomic regions from SNP 147552 to 148152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,424 DEBUG Processing 511/862 atomic regions from SNP 153156 to 153756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,505 DEBUG Processing 389/1139 atomic regions from SNP 116633 to 117233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,509 DEBUG Processing 286/653 atomic regions from SNP 85527 to 86127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,646 DEBUG Processing 461/475 atomic regions from SNP 138209 to 138809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,666 DEBUG Processing 418/1029 atomic regions from SNP 125301 to 125901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,699 DEBUG Processing 512/862 atomic regions from SNP 153456 to 154056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,699 DEBUG Processing 493/904 atomic regions from SNP 147852 to 148452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,751 DEBUG Processing 287/653 atomic regions from SNP 85827 to 86427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,782 DEBUG Processing 390/1139 atomic regions from SNP 116933 to 117533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,891 DEBUG Processing 462/475 atomic regions from SNP 138509 to 139109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,970 DEBUG Processing 513/862 atomic regions from SNP 153756 to 154356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,971 DEBUG Processing 419/1029 atomic regions from SNP 125601 to 126201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,993 DEBUG Processing 494/904 atomic regions from SNP 148152 to 148752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,001 DEBUG Processing 288/653 atomic regions from SNP 86127 to 86727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,065 DEBUG Processing 391/1139 atomic regions from SNP 117233 to 117833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,125 DEBUG Processing 463/475 atomic regions from SNP 138809 to 139409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,220 DEBUG Processing 514/862 atomic regions from SNP 154056 to 154656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,242 DEBUG Processing 289/653 atomic regions from SNP 86427 to 87027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,248 DEBUG Processing 420/1029 atomic regions from SNP 125901 to 126501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,268 DEBUG Processing 495/904 atomic regions from SNP 148452 to 149052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,343 DEBUG Processing 392/1139 atomic regions from SNP 117533 to 118133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,362 DEBUG Processing 464/475 atomic regions from SNP 139109 to 139709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,467 DEBUG Processing 515/862 atomic regions from SNP 154356 to 154956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,483 DEBUG Processing 290/653 atomic regions from SNP 86727 to 87327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,533 DEBUG Processing 421/1029 atomic regions from SNP 126201 to 126801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,543 DEBUG Processing 496/904 atomic regions from SNP 148752 to 149352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,604 DEBUG Processing 465/475 atomic regions from SNP 139409 to 140009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,623 DEBUG Processing 393/1139 atomic regions from SNP 117833 to 118433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,711 DEBUG Processing 516/862 atomic regions from SNP 154656 to 155256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,722 DEBUG Processing 291/653 atomic regions from SNP 87027 to 87627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,809 DEBUG Processing 497/904 atomic regions from SNP 149052 to 149652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,821 DEBUG Processing 422/1029 atomic regions from SNP 126501 to 127101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,848 DEBUG Processing 466/475 atomic regions from SNP 139709 to 140309 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,905 DEBUG Processing 394/1139 atomic regions from SNP 118133 to 118733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,959 DEBUG Processing 517/862 atomic regions from SNP 154956 to 155556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,962 DEBUG Processing 292/653 atomic regions from SNP 87327 to 87927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,090 DEBUG Processing 467/475 atomic regions from SNP 140009 to 140609 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,091 DEBUG Processing 498/904 atomic regions from SNP 149352 to 149952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,107 DEBUG Processing 423/1029 atomic regions from SNP 126801 to 127401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,190 DEBUG Processing 395/1139 atomic regions from SNP 118433 to 119033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,208 DEBUG Processing 293/653 atomic regions from SNP 87627 to 88227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,216 DEBUG Processing 518/862 atomic regions from SNP 155256 to 155856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,322 DEBUG Processing 468/475 atomic regions from SNP 140309 to 140909 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,367 DEBUG Processing 499/904 atomic regions from SNP 149652 to 150252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,376 DEBUG Processing 424/1029 atomic regions from SNP 127101 to 127701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,456 DEBUG Processing 294/653 atomic regions from SNP 87927 to 88527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,469 DEBUG Processing 519/862 atomic regions from SNP 155556 to 156156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,477 DEBUG Processing 396/1139 atomic regions from SNP 118733 to 119333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,551 DEBUG Processing 469/475 atomic regions from SNP 140609 to 141209 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,649 DEBUG Processing 500/904 atomic regions from SNP 149952 to 150552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,651 DEBUG Processing 425/1029 atomic regions from SNP 127401 to 128001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,706 DEBUG Processing 295/653 atomic regions from SNP 88227 to 88827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,727 DEBUG Processing 520/862 atomic regions from SNP 155856 to 156456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,763 DEBUG Processing 397/1139 atomic regions from SNP 119033 to 119633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,788 DEBUG Processing 470/475 atomic regions from SNP 140909 to 141509 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,918 DEBUG Processing 426/1029 atomic regions from SNP 127701 to 128301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,926 DEBUG Processing 501/904 atomic regions from SNP 150252 to 150852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,951 DEBUG Processing 296/653 atomic regions from SNP 88527 to 89127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,982 DEBUG Processing 521/862 atomic regions from SNP 156156 to 156756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,030 DEBUG Processing 471/475 atomic regions from SNP 141209 to 141809 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,049 DEBUG Processing 398/1139 atomic regions from SNP 119333 to 119933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,170 DEBUG Processing 502/904 atomic regions from SNP 150552 to 151152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,184 DEBUG Processing 427/1029 atomic regions from SNP 128001 to 128601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,189 DEBUG Processing 297/653 atomic regions from SNP 88827 to 89427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,228 DEBUG Processing 522/862 atomic regions from SNP 156456 to 157056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,272 DEBUG Processing 472/475 atomic regions from SNP 141509 to 142109 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,327 DEBUG Processing 399/1139 atomic regions from SNP 119633 to 120233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,418 DEBUG Processing 503/904 atomic regions from SNP 150852 to 151452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,429 DEBUG Processing 298/653 atomic regions from SNP 89127 to 89727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,453 DEBUG Processing 428/1029 atomic regions from SNP 128301 to 128901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,468 DEBUG Processing 523/862 atomic regions from SNP 156756 to 157356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,510 DEBUG Processing 473/475 atomic regions from SNP 141809 to 142409 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,604 DEBUG Processing 400/1139 atomic regions from SNP 119933 to 120533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,669 DEBUG Processing 299/653 atomic regions from SNP 89427 to 90027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,671 DEBUG Processing 504/904 atomic regions from SNP 151152 to 151752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,716 DEBUG Processing 524/862 atomic regions from SNP 157056 to 157656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,724 DEBUG Processing 429/1029 atomic regions from SNP 128601 to 129201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,749 DEBUG Processing 474/475 atomic regions from SNP 142109 to 142709 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,878 DEBUG Processing 401/1139 atomic regions from SNP 120233 to 120833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,913 DEBUG Processing 300/653 atomic regions from SNP 89727 to 90327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,926 DEBUG Processing 505/904 atomic regions from SNP 151452 to 152052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,966 DEBUG Processing 525/862 atomic regions from SNP 157356 to 157956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,991 DEBUG Processing 475/475 atomic regions from SNP 142409 to 143009 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:50,000 DEBUG Processing 430/1029 atomic regions from SNP 128901 to 129501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,126 DEBUG Unique SNPs positions in subchromosome 4: 143010 2025-01-31 09:45:50,150 DEBUG Processing 402/1139 atomic regions from SNP 120533 to 121133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,155 DEBUG Processing 301/653 atomic regions from SNP 90027 to 90627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,182 DEBUG Processing 506/904 atomic regions from SNP 151752 to 152352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,223 DEBUG Processing 526/862 atomic regions from SNP 157656 to 158256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,278 DEBUG Processing 431/1029 atomic regions from SNP 129201 to 129801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,390 DEBUG Processing 302/653 atomic regions from SNP 90327 to 90927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,427 DEBUG Processing 403/1139 atomic regions from SNP 120833 to 121433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,432 DEBUG Processing 507/904 atomic regions from SNP 152052 to 152652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,478 DEBUG Processing 527/862 atomic regions from SNP 157956 to 158556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,549 DEBUG Processing 432/1029 atomic regions from SNP 129501 to 130101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,626 DEBUG Processing 303/653 atomic regions from SNP 90627 to 91227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,682 DEBUG Processing 508/904 atomic regions from SNP 152352 to 152952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,703 DEBUG Processing 404/1139 atomic regions from SNP 121133 to 121733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,739 DEBUG Processing 528/862 atomic regions from SNP 158256 to 158856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,821 DEBUG Processing 433/1029 atomic regions from SNP 129801 to 130401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,830 DEBUG Subchromosome time: 134.19846859097015, subchromosome SNPs: 143010 2025-01-31 09:45:50,849 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:50,860 DEBUG Processing 304/653 atomic regions from SNP 90927 to 91527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,935 DEBUG Processing 509/904 atomic regions from SNP 152652 to 153252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,990 DEBUG Processing 405/1139 atomic regions from SNP 121433 to 122033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,991 DEBUG Processing 529/862 atomic regions from SNP 158556 to 159156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,092 DEBUG Processing 434/1029 atomic regions from SNP 130101 to 130701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,097 DEBUG Processing 305/653 atomic regions from SNP 91227 to 91827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,182 DEBUG Processing 510/904 atomic regions from SNP 152952 to 153552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,245 DEBUG Processing 530/862 atomic regions from SNP 158856 to 159456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,277 DEBUG Processing 406/1139 atomic regions from SNP 121733 to 122333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,333 DEBUG Processing 306/653 atomic regions from SNP 91527 to 92127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,357 DEBUG Processing 435/1029 atomic regions from SNP 130401 to 131001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,428 DEBUG Processing 511/904 atomic regions from SNP 153252 to 153852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,490 DEBUG Processing 531/862 atomic regions from SNP 159156 to 159756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,568 DEBUG Processing 307/653 atomic regions from SNP 91827 to 92427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,581 DEBUG Processing 407/1139 atomic regions from SNP 122033 to 122633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,650 DEBUG Processing 436/1029 atomic regions from SNP 130701 to 131301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,676 DEBUG Processing 512/904 atomic regions from SNP 153552 to 154152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,734 DEBUG Processing 532/862 atomic regions from SNP 159456 to 160056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,800 DEBUG Processing 308/653 atomic regions from SNP 92127 to 92727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,878 DEBUG Processing 408/1139 atomic regions from SNP 122333 to 122933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,931 DEBUG Processing 513/904 atomic regions from SNP 153852 to 154452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,932 DEBUG Processing 437/1029 atomic regions from SNP 131001 to 131601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,982 DEBUG Processing 533/862 atomic regions from SNP 159756 to 160356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,039 DEBUG Processing 309/653 atomic regions from SNP 92427 to 93027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,170 DEBUG Processing 409/1139 atomic regions from SNP 122633 to 123233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,193 DEBUG Processing 514/904 atomic regions from SNP 154152 to 154752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,215 DEBUG Processing 438/1029 atomic regions from SNP 131301 to 131901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,238 DEBUG Processing 534/862 atomic regions from SNP 160056 to 160656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,279 DEBUG Processing 310/653 atomic regions from SNP 92727 to 93327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,444 DEBUG Processing 515/904 atomic regions from SNP 154452 to 155052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,459 DEBUG Processing 410/1139 atomic regions from SNP 122933 to 123533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,484 DEBUG Processing 535/862 atomic regions from SNP 160356 to 160956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,488 DEBUG Processing 439/1029 atomic regions from SNP 131601 to 132201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,517 DEBUG Processing 311/653 atomic regions from SNP 93027 to 93627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,701 DEBUG Processing 516/904 atomic regions from SNP 154752 to 155352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,731 DEBUG Processing 536/862 atomic regions from SNP 160656 to 161256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,749 DEBUG Processing 411/1139 atomic regions from SNP 123233 to 123833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,754 DEBUG Processing 312/653 atomic regions from SNP 93327 to 93927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,754 DEBUG Processing 440/1029 atomic regions from SNP 131901 to 132501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,959 DEBUG Processing 517/904 atomic regions from SNP 155052 to 155652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,978 DEBUG Processing 537/862 atomic regions from SNP 160956 to 161556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,997 DEBUG Processing 313/653 atomic regions from SNP 93627 to 94227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,022 DEBUG Processing 441/1029 atomic regions from SNP 132201 to 132801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,028 DEBUG Processing 412/1139 atomic regions from SNP 123533 to 124133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,219 DEBUG Processing 518/904 atomic regions from SNP 155352 to 155952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,230 DEBUG Processing 538/862 atomic regions from SNP 161256 to 161856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,237 DEBUG Processing 314/653 atomic regions from SNP 93927 to 94527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,300 DEBUG Processing 413/1139 atomic regions from SNP 123833 to 124433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,316 DEBUG Processing 442/1029 atomic regions from SNP 132501 to 133101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,476 DEBUG Processing 519/904 atomic regions from SNP 155652 to 156252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,480 DEBUG Processing 539/862 atomic regions from SNP 161556 to 162156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,484 DEBUG Processing 315/653 atomic regions from SNP 94227 to 94827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,573 DEBUG Processing 414/1139 atomic regions from SNP 124133 to 124733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,581 DEBUG Processing 443/1029 atomic regions from SNP 132801 to 133401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,730 DEBUG Processing 316/653 atomic regions from SNP 94527 to 95127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,732 DEBUG Processing 540/862 atomic regions from SNP 161856 to 162456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,752 DEBUG Processing 520/904 atomic regions from SNP 155952 to 156552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,843 DEBUG Processing 444/1029 atomic regions from SNP 133101 to 133701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,845 DEBUG Processing 415/1139 atomic regions from SNP 124433 to 125033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,975 DEBUG Processing 317/653 atomic regions from SNP 94827 to 95427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,979 DEBUG Processing 541/862 atomic regions from SNP 162156 to 162756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,030 DEBUG Processing 521/904 atomic regions from SNP 156252 to 156852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,103 DEBUG Processing 445/1029 atomic regions from SNP 133401 to 134001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,112 DEBUG Processing 416/1139 atomic regions from SNP 124733 to 125333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,216 DEBUG Processing 318/653 atomic regions from SNP 95127 to 95727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,225 DEBUG Processing 542/862 atomic regions from SNP 162456 to 163056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,315 DEBUG Processing 522/904 atomic regions from SNP 156552 to 157152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,365 DEBUG Processing 446/1029 atomic regions from SNP 133701 to 134301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,383 DEBUG Processing 417/1139 atomic regions from SNP 125033 to 125633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,450 DEBUG Processing 319/653 atomic regions from SNP 95427 to 96027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,461 DEBUG Processing 543/862 atomic regions from SNP 162756 to 163356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,602 DEBUG Processing 523/904 atomic regions from SNP 156852 to 157452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,648 DEBUG Processing 447/1029 atomic regions from SNP 134001 to 134601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,676 DEBUG Processing 418/1139 atomic regions from SNP 125333 to 125933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,690 DEBUG Processing 320/653 atomic regions from SNP 95727 to 96327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,705 DEBUG Processing 544/862 atomic regions from SNP 163056 to 163656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,890 DEBUG Processing 524/904 atomic regions from SNP 157152 to 157752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,934 DEBUG Processing 321/653 atomic regions from SNP 96027 to 96627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,937 DEBUG Processing 448/1029 atomic regions from SNP 134301 to 134901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,952 DEBUG Processing 545/862 atomic regions from SNP 163356 to 163956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,972 DEBUG Processing 419/1139 atomic regions from SNP 125633 to 126233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,179 DEBUG Processing 525/904 atomic regions from SNP 157452 to 158052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,181 DEBUG Processing 322/653 atomic regions from SNP 96327 to 96927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,217 DEBUG Processing 449/1029 atomic regions from SNP 134601 to 135201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,232 DEBUG Processing 546/862 atomic regions from SNP 163656 to 164256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,290 DEBUG Processing 420/1139 atomic regions from SNP 125933 to 126533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,433 DEBUG Processing 323/653 atomic regions from SNP 96627 to 97227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,468 DEBUG Processing 526/904 atomic regions from SNP 157752 to 158352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,492 DEBUG Processing 547/862 atomic regions from SNP 163956 to 164556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,499 DEBUG Processing 450/1029 atomic regions from SNP 134901 to 135501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,594 DEBUG Processing 421/1139 atomic regions from SNP 126233 to 126833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,671 DEBUG Processing 324/653 atomic regions from SNP 96927 to 97527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,758 DEBUG Processing 527/904 atomic regions from SNP 158052 to 158652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,761 DEBUG Processing 548/862 atomic regions from SNP 164256 to 164856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,778 DEBUG Processing 451/1029 atomic regions from SNP 135201 to 135801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,896 DEBUG Processing 422/1139 atomic regions from SNP 126533 to 127133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,900 DEBUG Processing 325/653 atomic regions from SNP 97227 to 97827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,036 DEBUG Processing 549/862 atomic regions from SNP 164556 to 165156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,052 DEBUG Processing 528/904 atomic regions from SNP 158352 to 158952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,057 DEBUG Processing 452/1029 atomic regions from SNP 135501 to 136101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,130 DEBUG Processing 326/653 atomic regions from SNP 97527 to 98127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,196 DEBUG Processing 423/1139 atomic regions from SNP 126833 to 127433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,303 DEBUG Processing 550/862 atomic regions from SNP 164856 to 165456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,335 DEBUG Processing 453/1029 atomic regions from SNP 135801 to 136401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,344 DEBUG Processing 529/904 atomic regions from SNP 158652 to 159252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,374 DEBUG Processing 327/653 atomic regions from SNP 97827 to 98427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,491 DEBUG Processing 424/1139 atomic regions from SNP 127133 to 127733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,564 DEBUG Processing 551/862 atomic regions from SNP 165156 to 165756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,618 DEBUG Processing 454/1029 atomic regions from SNP 136101 to 136701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,626 DEBUG Processing 328/653 atomic regions from SNP 98127 to 98727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,643 DEBUG Processing 530/904 atomic regions from SNP 158952 to 159552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,791 DEBUG Processing 425/1139 atomic regions from SNP 127433 to 128033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,814 DEBUG Processing 552/862 atomic regions from SNP 165456 to 166056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,885 DEBUG Processing 329/653 atomic regions from SNP 98427 to 99027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,906 DEBUG Processing 455/1029 atomic regions from SNP 136401 to 137001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,933 DEBUG Processing 531/904 atomic regions from SNP 159252 to 159852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,049 DEBUG Processing 553/862 atomic regions from SNP 165756 to 166356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,092 DEBUG Processing 426/1139 atomic regions from SNP 127733 to 128333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,136 DEBUG Processing 330/653 atomic regions from SNP 98727 to 99327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,188 DEBUG Processing 456/1029 atomic regions from SNP 136701 to 137301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,228 DEBUG Processing 532/904 atomic regions from SNP 159552 to 160152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,284 DEBUG Processing 554/862 atomic regions from SNP 166056 to 166656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,382 DEBUG Processing 331/653 atomic regions from SNP 99027 to 99627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,401 DEBUG Processing 427/1139 atomic regions from SNP 128033 to 128633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,465 DEBUG Processing 457/1029 atomic regions from SNP 137001 to 137601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,521 DEBUG Processing 533/904 atomic regions from SNP 159852 to 160452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,525 DEBUG Processing 555/862 atomic regions from SNP 166356 to 166956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,624 DEBUG Processing 332/653 atomic regions from SNP 99327 to 99927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,697 DEBUG Processing 428/1139 atomic regions from SNP 128333 to 128933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,737 DEBUG Processing 458/1029 atomic regions from SNP 137301 to 137901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,777 DEBUG Processing 556/862 atomic regions from SNP 166656 to 167256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,807 DEBUG Processing 534/904 atomic regions from SNP 160152 to 160752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,878 DEBUG Processing 333/653 atomic regions from SNP 99627 to 100227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,969 DEBUG Processing 429/1139 atomic regions from SNP 128633 to 129233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,007 DEBUG Processing 459/1029 atomic regions from SNP 137601 to 138201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,026 DEBUG Processing 557/862 atomic regions from SNP 166956 to 167556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,085 DEBUG Processing 535/904 atomic regions from SNP 160452 to 161052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,139 DEBUG Processing 334/653 atomic regions from SNP 99927 to 100527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,239 DEBUG Processing 430/1139 atomic regions from SNP 128933 to 129533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,279 DEBUG Processing 558/862 atomic regions from SNP 167256 to 167856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,280 DEBUG Processing 460/1029 atomic regions from SNP 137901 to 138501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,366 DEBUG Processing 536/904 atomic regions from SNP 160752 to 161352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,400 DEBUG Processing 335/653 atomic regions from SNP 100227 to 100827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,509 DEBUG Processing 431/1139 atomic regions from SNP 129233 to 129833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,522 DEBUG Processing 559/862 atomic regions from SNP 167556 to 168156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,551 DEBUG Processing 461/1029 atomic regions from SNP 138201 to 138801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,649 DEBUG Processing 537/904 atomic regions from SNP 161052 to 161652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,657 DEBUG Processing 336/653 atomic regions from SNP 100527 to 101127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,764 DEBUG Processing 560/862 atomic regions from SNP 167856 to 168456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,782 DEBUG Processing 432/1139 atomic regions from SNP 129533 to 130133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,824 DEBUG Processing 462/1029 atomic regions from SNP 138501 to 139101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,911 DEBUG Processing 538/904 atomic regions from SNP 161352 to 161952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,911 DEBUG Processing 337/653 atomic regions from SNP 100827 to 101427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,001 DEBUG Processing 561/862 atomic regions from SNP 168156 to 168756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,055 DEBUG Processing 433/1139 atomic regions from SNP 129833 to 130433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,089 DEBUG Processing 463/1029 atomic regions from SNP 138801 to 139401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,160 DEBUG Processing 338/653 atomic regions from SNP 101127 to 101727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,189 DEBUG Processing 539/904 atomic regions from SNP 161652 to 162252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,244 DEBUG Processing 562/862 atomic regions from SNP 168456 to 169056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,325 DEBUG Processing 434/1139 atomic regions from SNP 130133 to 130733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,351 DEBUG Processing 464/1029 atomic regions from SNP 139101 to 139701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,406 DEBUG Processing 339/653 atomic regions from SNP 101427 to 102027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,470 DEBUG Processing 540/904 atomic regions from SNP 161952 to 162552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,488 DEBUG Processing 563/862 atomic regions from SNP 168756 to 169356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,596 DEBUG Processing 435/1139 atomic regions from SNP 130433 to 131033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,619 DEBUG Processing 465/1029 atomic regions from SNP 139401 to 140001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,649 DEBUG Processing 340/653 atomic regions from SNP 101727 to 102327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,735 DEBUG Processing 564/862 atomic regions from SNP 169056 to 169656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,740 DEBUG Processing 541/904 atomic regions from SNP 162252 to 162852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,781 DEBUG Segmenting atomic regions: 2025-01-31 09:45:59,871 DEBUG Processing 436/1139 atomic regions from SNP 130733 to 131333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,888 DEBUG Processing 466/1029 atomic regions from SNP 139701 to 140301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,892 DEBUG Processing 341/653 atomic regions from SNP 102027 to 102627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,892 DEBUG Processing 1/234 atomic regions from SNP 0 to 602 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,980 DEBUG Processing 565/862 atomic regions from SNP 169356 to 169956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,021 DEBUG Processing 542/904 atomic regions from SNP 162552 to 163152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,143 DEBUG Processing 342/653 atomic regions from SNP 102327 to 102927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,150 DEBUG Processing 2/234 atomic regions from SNP 302 to 904 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,161 DEBUG Processing 437/1139 atomic regions from SNP 131033 to 131633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,173 DEBUG Processing 467/1029 atomic regions from SNP 140001 to 140601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,231 DEBUG Processing 566/862 atomic regions from SNP 169656 to 170256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,288 DEBUG Processing 543/904 atomic regions from SNP 162852 to 163452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,405 DEBUG Processing 343/653 atomic regions from SNP 102627 to 103227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,406 DEBUG Processing 3/234 atomic regions from SNP 604 to 1206 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,454 DEBUG Processing 438/1139 atomic regions from SNP 131333 to 131933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,459 DEBUG Processing 468/1029 atomic regions from SNP 140301 to 140901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,488 DEBUG Processing 567/862 atomic regions from SNP 169956 to 170556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,548 DEBUG Processing 544/904 atomic regions from SNP 163152 to 163752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,654 DEBUG Processing 4/234 atomic regions from SNP 906 to 1508 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,664 DEBUG Processing 344/653 atomic regions from SNP 102927 to 103527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,737 DEBUG Processing 439/1139 atomic regions from SNP 131633 to 132233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,745 DEBUG Processing 469/1029 atomic regions from SNP 140601 to 141201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,761 DEBUG Processing 568/862 atomic regions from SNP 170256 to 170856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,807 DEBUG Processing 545/904 atomic regions from SNP 163452 to 164052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,894 DEBUG Processing 5/234 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,920 DEBUG Processing 345/653 atomic regions from SNP 103227 to 103827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,018 DEBUG Processing 440/1139 atomic regions from SNP 131933 to 132533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,026 DEBUG Processing 470/1029 atomic regions from SNP 140901 to 141501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,049 DEBUG Processing 569/862 atomic regions from SNP 170556 to 171156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,070 DEBUG Processing 546/904 atomic regions from SNP 163752 to 164352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,136 DEBUG Processing 6/234 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,156 DEBUG Processing 346/653 atomic regions from SNP 103527 to 104127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,302 DEBUG Processing 441/1139 atomic regions from SNP 132233 to 132833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,304 DEBUG Processing 471/1029 atomic regions from SNP 141201 to 141801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,335 DEBUG Processing 570/862 atomic regions from SNP 170856 to 171456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,354 DEBUG Processing 547/904 atomic regions from SNP 164052 to 164652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,384 DEBUG Processing 7/234 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,397 DEBUG Processing 347/653 atomic regions from SNP 103827 to 104427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,581 DEBUG Processing 472/1029 atomic regions from SNP 141501 to 142101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,585 DEBUG Processing 442/1139 atomic regions from SNP 132533 to 133133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,619 DEBUG Processing 571/862 atomic regions from SNP 171156 to 171756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,640 DEBUG Processing 8/234 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,643 DEBUG Processing 548/904 atomic regions from SNP 164352 to 164952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,649 DEBUG Processing 348/653 atomic regions from SNP 104127 to 104727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,855 DEBUG Processing 473/1029 atomic regions from SNP 141801 to 142401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,863 DEBUG Processing 443/1139 atomic regions from SNP 132833 to 133433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,871 DEBUG Processing 572/862 atomic regions from SNP 171456 to 172056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,896 DEBUG Processing 9/234 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,903 DEBUG Processing 349/653 atomic regions from SNP 104427 to 105027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,906 DEBUG Processing 549/904 atomic regions from SNP 164652 to 165252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,119 DEBUG Processing 573/862 atomic regions from SNP 171756 to 172356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,129 DEBUG Processing 474/1029 atomic regions from SNP 142101 to 142701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,144 DEBUG Processing 444/1139 atomic regions from SNP 133133 to 133733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,147 DEBUG Processing 10/234 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,150 DEBUG Processing 350/653 atomic regions from SNP 104727 to 105327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,160 DEBUG Processing 550/904 atomic regions from SNP 164952 to 165552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,365 DEBUG Processing 574/862 atomic regions from SNP 172056 to 172656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,397 DEBUG Processing 11/234 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,400 DEBUG Processing 351/653 atomic regions from SNP 105027 to 105627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,402 DEBUG Processing 475/1029 atomic regions from SNP 142401 to 143001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,415 DEBUG Processing 551/904 atomic regions from SNP 165252 to 165852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,429 DEBUG Processing 445/1139 atomic regions from SNP 133433 to 134033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,616 DEBUG Processing 575/862 atomic regions from SNP 172356 to 172956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,642 DEBUG Processing 12/234 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,644 DEBUG Processing 352/653 atomic regions from SNP 105327 to 105927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,670 DEBUG Processing 552/904 atomic regions from SNP 165552 to 166152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,676 DEBUG Processing 476/1029 atomic regions from SNP 142701 to 143301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,709 DEBUG Processing 446/1139 atomic regions from SNP 133733 to 134333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,867 DEBUG Processing 576/862 atomic regions from SNP 172656 to 173256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,890 DEBUG Processing 13/234 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,891 DEBUG Processing 353/653 atomic regions from SNP 105627 to 106227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,925 DEBUG Processing 553/904 atomic regions from SNP 165852 to 166452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,948 DEBUG Processing 477/1029 atomic regions from SNP 143001 to 143601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,982 DEBUG Processing 447/1139 atomic regions from SNP 134033 to 134633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,120 DEBUG Processing 577/862 atomic regions from SNP 172956 to 173556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,140 DEBUG Processing 354/653 atomic regions from SNP 105927 to 106527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,140 DEBUG Processing 14/234 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,183 DEBUG Processing 554/904 atomic regions from SNP 166152 to 166752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,220 DEBUG Processing 478/1029 atomic regions from SNP 143301 to 143901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,254 DEBUG Processing 448/1139 atomic regions from SNP 134333 to 134933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,373 DEBUG Processing 578/862 atomic regions from SNP 173256 to 173856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,390 DEBUG Processing 15/234 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,391 DEBUG Processing 355/653 atomic regions from SNP 106227 to 106827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,468 DEBUG Processing 555/904 atomic regions from SNP 166452 to 167052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,488 DEBUG Processing 479/1029 atomic regions from SNP 143601 to 144201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,529 DEBUG Processing 449/1139 atomic regions from SNP 134633 to 135233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,636 DEBUG Processing 356/653 atomic regions from SNP 106527 to 107127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,637 DEBUG Processing 16/234 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,641 DEBUG Processing 579/862 atomic regions from SNP 173556 to 174156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,741 DEBUG Processing 556/904 atomic regions from SNP 166752 to 167352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,757 DEBUG Processing 480/1029 atomic regions from SNP 143901 to 144501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,803 DEBUG Processing 450/1139 atomic regions from SNP 134933 to 135533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,879 DEBUG Processing 357/653 atomic regions from SNP 106827 to 107427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,881 DEBUG Processing 17/234 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,905 DEBUG Processing 580/862 atomic regions from SNP 173856 to 174456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,007 DEBUG Processing 557/904 atomic regions from SNP 167052 to 167652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,025 DEBUG Processing 481/1029 atomic regions from SNP 144201 to 144801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,078 DEBUG Processing 451/1139 atomic regions from SNP 135233 to 135833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,120 DEBUG Processing 358/653 atomic regions from SNP 107127 to 107727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,124 DEBUG Processing 18/234 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,150 DEBUG Processing 581/862 atomic regions from SNP 174156 to 174756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,279 DEBUG Processing 558/904 atomic regions from SNP 167352 to 167952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,295 DEBUG Processing 482/1029 atomic regions from SNP 144501 to 145101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,359 DEBUG Processing 452/1139 atomic regions from SNP 135533 to 136133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,367 DEBUG Processing 359/653 atomic regions from SNP 107427 to 108027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,371 DEBUG Processing 19/234 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,395 DEBUG Processing 582/862 atomic regions from SNP 174456 to 175056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,550 DEBUG Processing 559/904 atomic regions from SNP 167652 to 168252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,568 DEBUG Processing 483/1029 atomic regions from SNP 144801 to 145401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,616 DEBUG Processing 360/653 atomic regions from SNP 107727 to 108327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,624 DEBUG Processing 20/234 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,646 DEBUG Processing 583/862 atomic regions from SNP 174756 to 175356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,651 DEBUG Processing 453/1139 atomic regions from SNP 135833 to 136433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,817 DEBUG Processing 560/904 atomic regions from SNP 167952 to 168552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,844 DEBUG Processing 484/1029 atomic regions from SNP 145101 to 145701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,862 DEBUG Processing 361/653 atomic regions from SNP 108027 to 108627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,872 DEBUG Processing 21/234 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,889 DEBUG Processing 584/862 atomic regions from SNP 175056 to 175656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,932 DEBUG Processing 454/1139 atomic regions from SNP 136133 to 136733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,107 DEBUG Processing 561/904 atomic regions from SNP 168252 to 168852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,112 DEBUG Processing 362/653 atomic regions from SNP 108327 to 108927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,123 DEBUG Processing 22/234 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,127 DEBUG Processing 485/1029 atomic regions from SNP 145401 to 146001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,139 DEBUG Processing 585/862 atomic regions from SNP 175356 to 175956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,209 DEBUG Processing 455/1139 atomic regions from SNP 136433 to 137033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,365 DEBUG Processing 363/653 atomic regions from SNP 108627 to 109227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,376 DEBUG Processing 23/234 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,394 DEBUG Processing 586/862 atomic regions from SNP 175656 to 176256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,406 DEBUG Processing 562/904 atomic regions from SNP 168552 to 169152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,407 DEBUG Processing 486/1029 atomic regions from SNP 145701 to 146301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,491 DEBUG Processing 456/1139 atomic regions from SNP 136733 to 137333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,609 DEBUG Processing 364/653 atomic regions from SNP 108927 to 109527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,627 DEBUG Processing 24/234 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,646 DEBUG Processing 587/862 atomic regions from SNP 175956 to 176556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,694 DEBUG Processing 487/1029 atomic regions from SNP 146001 to 146601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,695 DEBUG Processing 563/904 atomic regions from SNP 168852 to 169452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,773 DEBUG Processing 457/1139 atomic regions from SNP 137033 to 137633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,857 DEBUG Processing 365/653 atomic regions from SNP 109227 to 109827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,868 DEBUG Processing 25/234 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,890 DEBUG Processing 588/862 atomic regions from SNP 176256 to 176856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,969 DEBUG Processing 564/904 atomic regions from SNP 169152 to 169752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,992 DEBUG Processing 488/1029 atomic regions from SNP 146301 to 146901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,059 DEBUG Processing 458/1139 atomic regions from SNP 137333 to 137933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,113 DEBUG Processing 26/234 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,117 DEBUG Processing 366/653 atomic regions from SNP 109527 to 110127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,139 DEBUG Processing 589/862 atomic regions from SNP 176556 to 177156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,239 DEBUG Processing 565/904 atomic regions from SNP 169452 to 170052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,307 DEBUG Processing 489/1029 atomic regions from SNP 146601 to 147201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,348 DEBUG Processing 459/1139 atomic regions from SNP 137633 to 138233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,363 DEBUG Processing 27/234 atomic regions from SNP 7852 to 8453 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,383 DEBUG Processing 367/653 atomic regions from SNP 109827 to 110427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,390 DEBUG Processing 590/862 atomic regions from SNP 176856 to 177456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,529 DEBUG Processing 566/904 atomic regions from SNP 169752 to 170352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,618 DEBUG Processing 28/234 atomic regions from SNP 8153 to 8754 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,624 DEBUG Processing 490/1029 atomic regions from SNP 146901 to 147501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,637 DEBUG Processing 460/1139 atomic regions from SNP 137933 to 138533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,654 DEBUG Processing 591/862 atomic regions from SNP 177156 to 177756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,661 DEBUG Processing 368/653 atomic regions from SNP 110127 to 110727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,800 DEBUG Processing 567/904 atomic regions from SNP 170052 to 170652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,871 DEBUG Processing 29/234 atomic regions from SNP 8454 to 9055 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,916 DEBUG Processing 592/862 atomic regions from SNP 177456 to 178056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,921 DEBUG Processing 491/1029 atomic regions from SNP 147201 to 147801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,927 DEBUG Processing 461/1139 atomic regions from SNP 138233 to 138833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,938 DEBUG Processing 369/653 atomic regions from SNP 110427 to 111027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,049 DEBUG Processing 568/904 atomic regions from SNP 170352 to 170952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,117 DEBUG Processing 30/234 atomic regions from SNP 8755 to 9356 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,190 DEBUG Processing 593/862 atomic regions from SNP 177756 to 178356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,205 DEBUG Processing 492/1029 atomic regions from SNP 147501 to 148101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,214 DEBUG Processing 370/653 atomic regions from SNP 110727 to 111327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,215 DEBUG Processing 462/1139 atomic regions from SNP 138533 to 139133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,306 DEBUG Processing 569/904 atomic regions from SNP 170652 to 171252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,358 DEBUG Processing 31/234 atomic regions from SNP 9056 to 9657 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,467 DEBUG Processing 594/862 atomic regions from SNP 178056 to 178656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,475 DEBUG Processing 371/653 atomic regions from SNP 111027 to 111627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,480 DEBUG Processing 493/1029 atomic regions from SNP 147801 to 148401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,497 DEBUG Processing 463/1139 atomic regions from SNP 138833 to 139433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,574 DEBUG Processing 570/904 atomic regions from SNP 170952 to 171552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,602 DEBUG Processing 32/234 atomic regions from SNP 9357 to 9958 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,716 DEBUG Processing 595/862 atomic regions from SNP 178356 to 178956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,729 DEBUG Processing 372/653 atomic regions from SNP 111327 to 111927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,750 DEBUG Processing 494/1029 atomic regions from SNP 148101 to 148701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,777 DEBUG Processing 464/1139 atomic regions from SNP 139133 to 139733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,850 DEBUG Processing 33/234 atomic regions from SNP 9658 to 10259 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,860 DEBUG Processing 571/904 atomic regions from SNP 171252 to 171852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,973 DEBUG Processing 596/862 atomic regions from SNP 178656 to 179256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,993 DEBUG Processing 373/653 atomic regions from SNP 111627 to 112227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,017 DEBUG Processing 495/1029 atomic regions from SNP 148401 to 149001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,057 DEBUG Processing 465/1139 atomic regions from SNP 139433 to 140033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,099 DEBUG Processing 34/234 atomic regions from SNP 9959 to 10560 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,155 DEBUG Processing 572/904 atomic regions from SNP 171552 to 172152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,231 DEBUG Processing 597/862 atomic regions from SNP 178956 to 179556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,265 DEBUG Processing 374/653 atomic regions from SNP 111927 to 112527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,291 DEBUG Processing 496/1029 atomic regions from SNP 148701 to 149301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,342 DEBUG Processing 466/1139 atomic regions from SNP 139733 to 140333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,345 DEBUG Processing 35/234 atomic regions from SNP 10260 to 10861 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,440 DEBUG Processing 573/904 atomic regions from SNP 171852 to 172452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,502 DEBUG Processing 598/862 atomic regions from SNP 179256 to 179856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,533 DEBUG Processing 375/653 atomic regions from SNP 112227 to 112827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,569 DEBUG Processing 497/1029 atomic regions from SNP 149001 to 149601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,593 DEBUG Processing 36/234 atomic regions from SNP 10561 to 11162 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,628 DEBUG Processing 467/1139 atomic regions from SNP 140033 to 140633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,713 DEBUG Processing 574/904 atomic regions from SNP 172152 to 172752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,773 DEBUG Processing 599/862 atomic regions from SNP 179556 to 180156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,784 DEBUG Processing 376/653 atomic regions from SNP 112527 to 113127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,842 DEBUG Processing 37/234 atomic regions from SNP 10862 to 11463 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,854 DEBUG Processing 498/1029 atomic regions from SNP 149301 to 149901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,921 DEBUG Processing 468/1139 atomic regions from SNP 140333 to 140933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,982 DEBUG Processing 575/904 atomic regions from SNP 172452 to 173052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,026 DEBUG Processing 600/862 atomic regions from SNP 179856 to 180456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,050 DEBUG Processing 377/653 atomic regions from SNP 112827 to 113427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,088 DEBUG Processing 38/234 atomic regions from SNP 11163 to 11764 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,130 DEBUG Processing 499/1029 atomic regions from SNP 149601 to 150201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,215 DEBUG Processing 469/1139 atomic regions from SNP 140633 to 141233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,264 DEBUG Processing 576/904 atomic regions from SNP 172752 to 173352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,277 DEBUG Processing 601/862 atomic regions from SNP 180156 to 180756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,299 DEBUG Processing 378/653 atomic regions from SNP 113127 to 113727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,334 DEBUG Processing 39/234 atomic regions from SNP 11464 to 12065 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,400 DEBUG Processing 500/1029 atomic regions from SNP 149901 to 150501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,497 DEBUG Processing 470/1139 atomic regions from SNP 140933 to 141533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,532 DEBUG Processing 602/862 atomic regions from SNP 180456 to 181056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,549 DEBUG Processing 577/904 atomic regions from SNP 173052 to 173652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,554 DEBUG Processing 379/653 atomic regions from SNP 113427 to 114027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,585 DEBUG Processing 40/234 atomic regions from SNP 11765 to 12366 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,670 DEBUG Processing 501/1029 atomic regions from SNP 150201 to 150801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,785 DEBUG Processing 603/862 atomic regions from SNP 180756 to 181356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,810 DEBUG Processing 471/1139 atomic regions from SNP 141233 to 141833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,814 DEBUG Processing 578/904 atomic regions from SNP 173352 to 173952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,828 DEBUG Processing 380/653 atomic regions from SNP 113727 to 114327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,842 DEBUG Processing 41/234 atomic regions from SNP 12066 to 12667 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,939 DEBUG Processing 502/1029 atomic regions from SNP 150501 to 151101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,037 DEBUG Processing 604/862 atomic regions from SNP 181056 to 181656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,089 DEBUG Processing 381/653 atomic regions from SNP 114027 to 114627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,100 DEBUG Processing 579/904 atomic regions from SNP 173652 to 174252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,101 DEBUG Processing 42/234 atomic regions from SNP 12367 to 12968 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,126 DEBUG Processing 472/1139 atomic regions from SNP 141533 to 142133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,213 DEBUG Processing 503/1029 atomic regions from SNP 150801 to 151401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,290 DEBUG Processing 605/862 atomic regions from SNP 181356 to 181956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,348 DEBUG Processing 382/653 atomic regions from SNP 114327 to 114927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,351 DEBUG Processing 43/234 atomic regions from SNP 12668 to 13269 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,385 DEBUG Processing 580/904 atomic regions from SNP 173952 to 174552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,419 DEBUG Processing 473/1139 atomic regions from SNP 141833 to 142433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,480 DEBUG Processing 504/1029 atomic regions from SNP 151101 to 151701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,558 DEBUG Processing 606/862 atomic regions from SNP 181656 to 182256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,593 DEBUG Processing 44/234 atomic regions from SNP 12969 to 13570 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,619 DEBUG Processing 383/653 atomic regions from SNP 114627 to 115227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,673 DEBUG Processing 581/904 atomic regions from SNP 174252 to 174852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,704 DEBUG Processing 474/1139 atomic regions from SNP 142133 to 142733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,751 DEBUG Processing 505/1029 atomic regions from SNP 151401 to 152001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,822 DEBUG Processing 607/862 atomic regions from SNP 181956 to 182556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,829 DEBUG Processing 45/234 atomic regions from SNP 13270 to 13871 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,884 DEBUG Processing 384/653 atomic regions from SNP 114927 to 115527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,966 DEBUG Processing 582/904 atomic regions from SNP 174552 to 175152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,984 DEBUG Processing 475/1139 atomic regions from SNP 142433 to 143033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,023 DEBUG Processing 506/1029 atomic regions from SNP 151701 to 152301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,069 DEBUG Processing 46/234 atomic regions from SNP 13571 to 14172 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,094 DEBUG Processing 608/862 atomic regions from SNP 182256 to 182856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,129 DEBUG Processing 385/653 atomic regions from SNP 115227 to 115827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,248 DEBUG Processing 583/904 atomic regions from SNP 174852 to 175452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,271 DEBUG Processing 476/1139 atomic regions from SNP 142733 to 143333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,305 DEBUG Processing 507/1029 atomic regions from SNP 152001 to 152601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,317 DEBUG Processing 47/234 atomic regions from SNP 13872 to 14473 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,369 DEBUG Processing 609/862 atomic regions from SNP 182556 to 183156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,378 DEBUG Processing 386/653 atomic regions from SNP 115527 to 116127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,537 DEBUG Processing 584/904 atomic regions from SNP 175152 to 175752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,562 DEBUG Processing 477/1139 atomic regions from SNP 143033 to 143633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,588 DEBUG Processing 508/1029 atomic regions from SNP 152301 to 152901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,591 DEBUG Processing 48/234 atomic regions from SNP 14173 to 14774 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,627 DEBUG Processing 387/653 atomic regions from SNP 115827 to 116427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,641 DEBUG Processing 610/862 atomic regions from SNP 182856 to 183456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,786 DEBUG Processing 585/904 atomic regions from SNP 175452 to 176052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,833 DEBUG Processing 49/234 atomic regions from SNP 14474 to 15075 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,844 DEBUG Processing 478/1139 atomic regions from SNP 143333 to 143933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,867 DEBUG Processing 509/1029 atomic regions from SNP 152601 to 153201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,874 DEBUG Processing 388/653 atomic regions from SNP 116127 to 116727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,898 DEBUG Processing 611/862 atomic regions from SNP 183156 to 183756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,035 DEBUG Processing 586/904 atomic regions from SNP 175752 to 176352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,069 DEBUG Processing 50/234 atomic regions from SNP 14775 to 15376 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,124 DEBUG Processing 389/653 atomic regions from SNP 116427 to 117027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,125 DEBUG Processing 479/1139 atomic regions from SNP 143633 to 144233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,147 DEBUG Processing 510/1029 atomic regions from SNP 152901 to 153501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,153 DEBUG Processing 612/862 atomic regions from SNP 183456 to 184056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,300 DEBUG Processing 51/234 atomic regions from SNP 15076 to 15677 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,301 DEBUG Processing 587/904 atomic regions from SNP 176052 to 176652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,371 DEBUG Processing 390/653 atomic regions from SNP 116727 to 117327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,409 DEBUG Processing 480/1139 atomic regions from SNP 143933 to 144533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,423 DEBUG Processing 613/862 atomic regions from SNP 183756 to 184356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,427 DEBUG Processing 511/1029 atomic regions from SNP 153201 to 153801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,529 DEBUG Processing 52/234 atomic regions from SNP 15377 to 15978 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,572 DEBUG Processing 588/904 atomic regions from SNP 176352 to 176952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,617 DEBUG Processing 391/653 atomic regions from SNP 117027 to 117627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,682 DEBUG Processing 614/862 atomic regions from SNP 184056 to 184656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,698 DEBUG Processing 481/1139 atomic regions from SNP 144233 to 144833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,708 DEBUG Processing 512/1029 atomic regions from SNP 153501 to 154101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,763 DEBUG Processing 53/234 atomic regions from SNP 15678 to 16279 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,839 DEBUG Processing 589/904 atomic regions from SNP 176652 to 177252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,857 DEBUG Processing 392/653 atomic regions from SNP 117327 to 117927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,934 DEBUG Processing 615/862 atomic regions from SNP 184356 to 184956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,986 DEBUG Processing 482/1139 atomic regions from SNP 144533 to 145133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,990 DEBUG Processing 513/1029 atomic regions from SNP 153801 to 154401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,005 DEBUG Processing 54/234 atomic regions from SNP 15979 to 16580 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,103 DEBUG Processing 393/653 atomic regions from SNP 117627 to 118227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,104 DEBUG Processing 590/904 atomic regions from SNP 176952 to 177552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,182 DEBUG Processing 616/862 atomic regions from SNP 184656 to 185256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,248 DEBUG Processing 55/234 atomic regions from SNP 16280 to 16881 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,268 DEBUG Processing 514/1029 atomic regions from SNP 154101 to 154701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,293 DEBUG Processing 483/1139 atomic regions from SNP 144833 to 145433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,355 DEBUG Processing 394/653 atomic regions from SNP 117927 to 118527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,363 DEBUG Processing 591/904 atomic regions from SNP 177252 to 177852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,433 DEBUG Processing 617/862 atomic regions from SNP 184956 to 185556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,494 DEBUG Processing 56/234 atomic regions from SNP 16581 to 17182 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,550 DEBUG Processing 515/1029 atomic regions from SNP 154401 to 155001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,610 DEBUG Processing 484/1139 atomic regions from SNP 145133 to 145733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,611 DEBUG Processing 395/653 atomic regions from SNP 118227 to 118827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,624 DEBUG Processing 592/904 atomic regions from SNP 177552 to 178152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,680 DEBUG Processing 618/862 atomic regions from SNP 185256 to 185856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,729 DEBUG Processing 57/234 atomic regions from SNP 16882 to 17483 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,824 DEBUG Processing 516/1029 atomic regions from SNP 154701 to 155301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,863 DEBUG Processing 396/653 atomic regions from SNP 118527 to 119127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,885 DEBUG Processing 593/904 atomic regions from SNP 177852 to 178452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,921 DEBUG Processing 485/1139 atomic regions from SNP 145433 to 146033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,953 DEBUG Processing 619/862 atomic regions from SNP 185556 to 186156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,970 DEBUG Processing 58/234 atomic regions from SNP 17183 to 17784 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,091 DEBUG Processing 517/1029 atomic regions from SNP 155001 to 155601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,106 DEBUG Processing 397/653 atomic regions from SNP 118827 to 119427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,140 DEBUG Processing 594/904 atomic regions from SNP 178152 to 178752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,213 DEBUG Processing 59/234 atomic regions from SNP 17484 to 18085 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,214 DEBUG Processing 486/1139 atomic regions from SNP 145733 to 146333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,234 DEBUG Processing 620/862 atomic regions from SNP 185856 to 186456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,343 DEBUG Processing 398/653 atomic regions from SNP 119127 to 119727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,354 DEBUG Processing 518/1029 atomic regions from SNP 155301 to 155901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,387 DEBUG Processing 595/904 atomic regions from SNP 178452 to 179052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,461 DEBUG Processing 60/234 atomic regions from SNP 17785 to 18386 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,489 DEBUG Processing 621/862 atomic regions from SNP 186156 to 186756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,510 DEBUG Processing 487/1139 atomic regions from SNP 146033 to 146633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,584 DEBUG Processing 399/653 atomic regions from SNP 119427 to 120027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,623 DEBUG Processing 519/1029 atomic regions from SNP 155601 to 156201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,633 DEBUG Processing 596/904 atomic regions from SNP 178752 to 179352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,702 DEBUG Processing 61/234 atomic regions from SNP 18086 to 18687 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,741 DEBUG Processing 622/862 atomic regions from SNP 186456 to 187056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,819 DEBUG Processing 488/1139 atomic regions from SNP 146333 to 146933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,825 DEBUG Processing 400/653 atomic regions from SNP 119727 to 120327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,902 DEBUG Processing 597/904 atomic regions from SNP 179052 to 179652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,915 DEBUG Processing 520/1029 atomic regions from SNP 155901 to 156501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,943 DEBUG Processing 62/234 atomic regions from SNP 18387 to 18988 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,989 DEBUG Processing 623/862 atomic regions from SNP 186756 to 187356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,067 DEBUG Processing 401/653 atomic regions from SNP 120027 to 120627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,132 DEBUG Processing 489/1139 atomic regions from SNP 146633 to 147233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,179 DEBUG Processing 63/234 atomic regions from SNP 18688 to 19289 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,181 DEBUG Processing 598/904 atomic regions from SNP 179352 to 179952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,194 DEBUG Processing 521/1029 atomic regions from SNP 156201 to 156801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,238 DEBUG Processing 624/862 atomic regions from SNP 187056 to 187656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,310 DEBUG Processing 402/653 atomic regions from SNP 120327 to 120927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,416 DEBUG Processing 64/234 atomic regions from SNP 18989 to 19590 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,448 DEBUG Processing 490/1139 atomic regions from SNP 146933 to 147533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,453 DEBUG Processing 599/904 atomic regions from SNP 179652 to 180252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,487 DEBUG Processing 625/862 atomic regions from SNP 187356 to 187956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,489 DEBUG Processing 522/1029 atomic regions from SNP 156501 to 157101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,552 DEBUG Processing 403/653 atomic regions from SNP 120627 to 121227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,651 DEBUG Processing 65/234 atomic regions from SNP 19290 to 19891 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,719 DEBUG Processing 600/904 atomic regions from SNP 179952 to 180552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,735 DEBUG Processing 626/862 atomic regions from SNP 187656 to 188256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,761 DEBUG Processing 491/1139 atomic regions from SNP 147233 to 147833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,794 DEBUG Processing 523/1029 atomic regions from SNP 156801 to 157401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,795 DEBUG Processing 404/653 atomic regions from SNP 120927 to 121527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,884 DEBUG Processing 66/234 atomic regions from SNP 19591 to 20192 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,976 DEBUG Processing 627/862 atomic regions from SNP 187956 to 188556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,996 DEBUG Processing 601/904 atomic regions from SNP 180252 to 180852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,043 DEBUG Processing 405/653 atomic regions from SNP 121227 to 121827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,059 DEBUG Processing 492/1139 atomic regions from SNP 147533 to 148133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,104 DEBUG Processing 524/1029 atomic regions from SNP 157101 to 157701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,122 DEBUG Processing 67/234 atomic regions from SNP 19892 to 20493 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,214 DEBUG Processing 628/862 atomic regions from SNP 188256 to 188856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,282 DEBUG Processing 602/904 atomic regions from SNP 180552 to 181152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,285 DEBUG Processing 406/653 atomic regions from SNP 121527 to 122127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,346 DEBUG Processing 493/1139 atomic regions from SNP 147833 to 148433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,369 DEBUG Processing 68/234 atomic regions from SNP 20193 to 20794 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,406 DEBUG Processing 525/1029 atomic regions from SNP 157401 to 158001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,477 DEBUG Processing 629/862 atomic regions from SNP 188556 to 189156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,527 DEBUG Processing 407/653 atomic regions from SNP 121827 to 122427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,574 DEBUG Processing 603/904 atomic regions from SNP 180852 to 181452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,610 DEBUG Processing 69/234 atomic regions from SNP 20494 to 21095 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,656 DEBUG Processing 494/1139 atomic regions from SNP 148133 to 148733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,699 DEBUG Processing 526/1029 atomic regions from SNP 157701 to 158301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,747 DEBUG Processing 630/862 atomic regions from SNP 188856 to 189456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,769 DEBUG Processing 408/653 atomic regions from SNP 122127 to 122727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,847 DEBUG Processing 70/234 atomic regions from SNP 20795 to 21396 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,867 DEBUG Processing 604/904 atomic regions from SNP 181152 to 181752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,963 DEBUG Processing 495/1139 atomic regions from SNP 148433 to 149033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,991 DEBUG Processing 527/1029 atomic regions from SNP 158001 to 158601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,016 DEBUG Processing 409/653 atomic regions from SNP 122427 to 123027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,028 DEBUG Processing 631/862 atomic regions from SNP 189156 to 189756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,084 DEBUG Processing 71/234 atomic regions from SNP 21096 to 21697 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,152 DEBUG Processing 605/904 atomic regions from SNP 181452 to 182052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,251 DEBUG Processing 496/1139 atomic regions from SNP 148733 to 149333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,262 DEBUG Processing 410/653 atomic regions from SNP 122727 to 123327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,272 DEBUG Processing 528/1029 atomic regions from SNP 158301 to 158901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,309 DEBUG Processing 632/862 atomic regions from SNP 189456 to 190056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,327 DEBUG Processing 72/234 atomic regions from SNP 21397 to 21998 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,432 DEBUG Processing 606/904 atomic regions from SNP 181752 to 182352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,510 DEBUG Processing 411/653 atomic regions from SNP 123027 to 123627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,556 DEBUG Processing 497/1139 atomic regions from SNP 149033 to 149633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,564 DEBUG Processing 73/234 atomic regions from SNP 21698 to 22299 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,580 DEBUG Processing 529/1029 atomic regions from SNP 158601 to 159201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,584 DEBUG Processing 633/862 atomic regions from SNP 189756 to 190356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,706 DEBUG Processing 607/904 atomic regions from SNP 182052 to 182652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,752 DEBUG Processing 412/653 atomic regions from SNP 123327 to 123927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,803 DEBUG Processing 74/234 atomic regions from SNP 21999 to 22600 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,863 DEBUG Processing 634/862 atomic regions from SNP 190056 to 190656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,870 DEBUG Processing 498/1139 atomic regions from SNP 149333 to 149933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,881 DEBUG Processing 530/1029 atomic regions from SNP 158901 to 159501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,973 DEBUG Processing 608/904 atomic regions from SNP 182352 to 182952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,986 DEBUG Processing 413/653 atomic regions from SNP 123627 to 124227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,034 DEBUG Processing 75/234 atomic regions from SNP 22300 to 22901 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,148 DEBUG Processing 635/862 atomic regions from SNP 190356 to 190956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,172 DEBUG Processing 531/1029 atomic regions from SNP 159201 to 159801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,176 DEBUG Processing 499/1139 atomic regions from SNP 149633 to 150233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,222 DEBUG Processing 609/904 atomic regions from SNP 182652 to 183252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,251 DEBUG Processing 414/653 atomic regions from SNP 123927 to 124527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,265 DEBUG Processing 76/234 atomic regions from SNP 22601 to 23202 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,424 DEBUG Processing 636/862 atomic regions from SNP 190656 to 191256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,475 DEBUG Processing 532/1029 atomic regions from SNP 159501 to 160101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,476 DEBUG Processing 500/1139 atomic regions from SNP 149933 to 150533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,478 DEBUG Processing 610/904 atomic regions from SNP 182952 to 183552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,505 DEBUG Processing 77/234 atomic regions from SNP 22902 to 23503 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,512 DEBUG Processing 415/653 atomic regions from SNP 124227 to 124827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,699 DEBUG Processing 637/862 atomic regions from SNP 190956 to 191556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,735 DEBUG Processing 611/904 atomic regions from SNP 183252 to 183852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,749 DEBUG Processing 78/234 atomic regions from SNP 23203 to 23804 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,759 DEBUG Processing 533/1029 atomic regions from SNP 159801 to 160401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,760 DEBUG Processing 416/653 atomic regions from SNP 124527 to 125127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,786 DEBUG Processing 501/1139 atomic regions from SNP 150233 to 150833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,978 DEBUG Processing 638/862 atomic regions from SNP 191256 to 191856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,987 DEBUG Processing 612/904 atomic regions from SNP 183552 to 184152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,991 DEBUG Processing 79/234 atomic regions from SNP 23504 to 24105 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,011 DEBUG Processing 417/653 atomic regions from SNP 124827 to 125427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,041 DEBUG Processing 534/1029 atomic regions from SNP 160101 to 160701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,100 DEBUG Processing 502/1139 atomic regions from SNP 150533 to 151133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,235 DEBUG Processing 80/234 atomic regions from SNP 23805 to 24406 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,237 DEBUG Processing 613/904 atomic regions from SNP 183852 to 184452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,257 DEBUG Processing 639/862 atomic regions from SNP 191556 to 192156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,281 DEBUG Processing 418/653 atomic regions from SNP 125127 to 125727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,325 DEBUG Processing 535/1029 atomic regions from SNP 160401 to 161001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,407 DEBUG Processing 503/1139 atomic regions from SNP 150833 to 151433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,484 DEBUG Processing 614/904 atomic regions from SNP 184152 to 184752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,487 DEBUG Processing 81/234 atomic regions from SNP 24106 to 24707 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,529 DEBUG Processing 640/862 atomic regions from SNP 191856 to 192456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,551 DEBUG Processing 419/653 atomic regions from SNP 125427 to 126027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,607 DEBUG Processing 536/1029 atomic regions from SNP 160701 to 161301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,691 DEBUG Processing 504/1139 atomic regions from SNP 151133 to 151733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,718 DEBUG Processing 82/234 atomic regions from SNP 24407 to 25008 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,729 DEBUG Processing 615/904 atomic regions from SNP 184452 to 185052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,796 DEBUG Processing 641/862 atomic regions from SNP 192156 to 192756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,825 DEBUG Processing 420/653 atomic regions from SNP 125727 to 126327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,892 DEBUG Processing 537/1029 atomic regions from SNP 161001 to 161601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,955 DEBUG Processing 83/234 atomic regions from SNP 24708 to 25309 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,972 DEBUG Processing 505/1139 atomic regions from SNP 151433 to 152033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,980 DEBUG Processing 616/904 atomic regions from SNP 184752 to 185352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,041 DEBUG Processing 642/862 atomic regions from SNP 192456 to 193056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,078 DEBUG Processing 421/653 atomic regions from SNP 126027 to 126627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,172 DEBUG Processing 538/1029 atomic regions from SNP 161301 to 161901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,200 DEBUG Processing 84/234 atomic regions from SNP 25009 to 25610 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,241 DEBUG Processing 617/904 atomic regions from SNP 185052 to 185652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,261 DEBUG Processing 506/1139 atomic regions from SNP 151733 to 152333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,304 DEBUG Processing 643/862 atomic regions from SNP 192756 to 193356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,326 DEBUG Processing 422/653 atomic regions from SNP 126327 to 126927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,442 DEBUG Processing 85/234 atomic regions from SNP 25310 to 25911 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,448 DEBUG Processing 539/1029 atomic regions from SNP 161601 to 162201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,503 DEBUG Processing 618/904 atomic regions from SNP 185352 to 185952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,551 DEBUG Processing 507/1139 atomic regions from SNP 152033 to 152633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,560 DEBUG Processing 644/862 atomic regions from SNP 193056 to 193656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,598 DEBUG Processing 423/653 atomic regions from SNP 126627 to 127227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,681 DEBUG Processing 86/234 atomic regions from SNP 25611 to 26212 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,726 DEBUG Processing 540/1029 atomic regions from SNP 161901 to 162501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,766 DEBUG Processing 619/904 atomic regions from SNP 185652 to 186252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,813 DEBUG Processing 645/862 atomic regions from SNP 193356 to 193956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,837 DEBUG Processing 508/1139 atomic regions from SNP 152333 to 152933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,872 DEBUG Processing 424/653 atomic regions from SNP 126927 to 127527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,913 DEBUG Processing 87/234 atomic regions from SNP 25912 to 26513 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,998 DEBUG Processing 541/1029 atomic regions from SNP 162201 to 162801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,026 DEBUG Processing 620/904 atomic regions from SNP 185952 to 186552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,067 DEBUG Processing 646/862 atomic regions from SNP 193656 to 194256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,130 DEBUG Processing 509/1139 atomic regions from SNP 152633 to 153233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,137 DEBUG Processing 425/653 atomic regions from SNP 127227 to 127827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,146 DEBUG Processing 88/234 atomic regions from SNP 26213 to 26814 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,269 DEBUG Processing 542/1029 atomic regions from SNP 162501 to 163101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,277 DEBUG Processing 621/904 atomic regions from SNP 186252 to 186852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,320 DEBUG Processing 647/862 atomic regions from SNP 193956 to 194556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,391 DEBUG Processing 89/234 atomic regions from SNP 26514 to 27115 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,416 DEBUG Processing 426/653 atomic regions from SNP 127527 to 128127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,417 DEBUG Processing 510/1139 atomic regions from SNP 152933 to 153533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,524 DEBUG Processing 622/904 atomic regions from SNP 186552 to 187152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,538 DEBUG Processing 543/1029 atomic regions from SNP 162801 to 163401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,567 DEBUG Processing 648/862 atomic regions from SNP 194256 to 194856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,634 DEBUG Processing 90/234 atomic regions from SNP 26815 to 27416 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,698 DEBUG Processing 427/653 atomic regions from SNP 127827 to 128427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,699 DEBUG Processing 511/1139 atomic regions from SNP 153233 to 153833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,775 DEBUG Processing 623/904 atomic regions from SNP 186852 to 187452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,812 DEBUG Processing 544/1029 atomic regions from SNP 163101 to 163701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,812 DEBUG Processing 649/862 atomic regions from SNP 194556 to 195156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,877 DEBUG Processing 91/234 atomic regions from SNP 27116 to 27717 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,967 DEBUG Processing 428/653 atomic regions from SNP 128127 to 128727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,987 DEBUG Processing 512/1139 atomic regions from SNP 153533 to 154133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,032 DEBUG Processing 624/904 atomic regions from SNP 187152 to 187752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,087 DEBUG Processing 650/862 atomic regions from SNP 194856 to 195456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,102 DEBUG Processing 545/1029 atomic regions from SNP 163401 to 164001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,123 DEBUG Processing 92/234 atomic regions from SNP 27417 to 28018 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,230 DEBUG Processing 429/653 atomic regions from SNP 128427 to 129027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,286 DEBUG Processing 513/1139 atomic regions from SNP 153833 to 154433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,287 DEBUG Processing 625/904 atomic regions from SNP 187452 to 188052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,361 DEBUG Processing 651/862 atomic regions from SNP 195156 to 195756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,376 DEBUG Processing 546/1029 atomic regions from SNP 163701 to 164301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,379 DEBUG Processing 93/234 atomic regions from SNP 27718 to 28319 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,494 DEBUG Processing 430/653 atomic regions from SNP 128727 to 129327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,546 DEBUG Processing 626/904 atomic regions from SNP 187752 to 188352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,610 DEBUG Processing 514/1139 atomic regions from SNP 154133 to 154733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,622 DEBUG Processing 94/234 atomic regions from SNP 28019 to 28620 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,637 DEBUG Processing 652/862 atomic regions from SNP 195456 to 196056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,659 DEBUG Processing 547/1029 atomic regions from SNP 164001 to 164601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,776 DEBUG Processing 431/653 atomic regions from SNP 129027 to 129627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,802 DEBUG Processing 627/904 atomic regions from SNP 188052 to 188652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,860 DEBUG Processing 95/234 atomic regions from SNP 28320 to 28921 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,878 DEBUG Processing 653/862 atomic regions from SNP 195756 to 196356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,908 DEBUG Processing 515/1139 atomic regions from SNP 154433 to 155033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,928 DEBUG Processing 548/1029 atomic regions from SNP 164301 to 164901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,040 DEBUG Processing 432/653 atomic regions from SNP 129327 to 129927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,059 DEBUG Processing 628/904 atomic regions from SNP 188352 to 188952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,097 DEBUG Processing 96/234 atomic regions from SNP 28621 to 29222 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,119 DEBUG Processing 654/862 atomic regions from SNP 196056 to 196656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,193 DEBUG Processing 549/1029 atomic regions from SNP 164601 to 165201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,204 DEBUG Processing 516/1139 atomic regions from SNP 154733 to 155333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,310 DEBUG Processing 433/653 atomic regions from SNP 129627 to 130227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,320 DEBUG Processing 629/904 atomic regions from SNP 188652 to 189252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,340 DEBUG Processing 97/234 atomic regions from SNP 28922 to 29523 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,360 DEBUG Processing 655/862 atomic regions from SNP 196356 to 196956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,459 DEBUG Processing 550/1029 atomic regions from SNP 164901 to 165501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,481 DEBUG Processing 517/1139 atomic regions from SNP 155033 to 155633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,578 DEBUG Processing 434/653 atomic regions from SNP 129927 to 130527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,579 DEBUG Processing 630/904 atomic regions from SNP 188952 to 189552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,586 DEBUG Processing 98/234 atomic regions from SNP 29223 to 29824 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,621 DEBUG Processing 656/862 atomic regions from SNP 196656 to 197256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,728 DEBUG Processing 551/1029 atomic regions from SNP 165201 to 165801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,757 DEBUG Processing 518/1139 atomic regions from SNP 155333 to 155933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,828 DEBUG Processing 99/234 atomic regions from SNP 29524 to 30125 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,841 DEBUG Processing 631/904 atomic regions from SNP 189252 to 189852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,846 DEBUG Processing 435/653 atomic regions from SNP 130227 to 130827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,882 DEBUG Processing 657/862 atomic regions from SNP 196956 to 197556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,993 DEBUG Processing 552/1029 atomic regions from SNP 165501 to 166101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,039 DEBUG Processing 519/1139 atomic regions from SNP 155633 to 156233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,071 DEBUG Processing 100/234 atomic regions from SNP 29825 to 30426 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,098 DEBUG Processing 632/904 atomic regions from SNP 189552 to 190152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,099 DEBUG Processing 436/653 atomic regions from SNP 130527 to 131127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,142 DEBUG Processing 658/862 atomic regions from SNP 197256 to 197856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,257 DEBUG Processing 553/1029 atomic regions from SNP 165801 to 166401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,310 DEBUG Processing 101/234 atomic regions from SNP 30126 to 30727 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,345 DEBUG Processing 520/1139 atomic regions from SNP 155933 to 156533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,349 DEBUG Processing 437/653 atomic regions from SNP 130827 to 131427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,356 DEBUG Processing 633/904 atomic regions from SNP 189852 to 190452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,421 DEBUG Processing 659/862 atomic regions from SNP 197556 to 198156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,523 DEBUG Processing 554/1029 atomic regions from SNP 166101 to 166701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,545 DEBUG Processing 102/234 atomic regions from SNP 30427 to 31028 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,615 DEBUG Processing 634/904 atomic regions from SNP 190152 to 190752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,622 DEBUG Processing 438/653 atomic regions from SNP 131127 to 131727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,662 DEBUG Processing 521/1139 atomic regions from SNP 156233 to 156833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,693 DEBUG Processing 660/862 atomic regions from SNP 197856 to 198456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,772 DEBUG Processing 103/234 atomic regions from SNP 30728 to 31329 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,786 DEBUG Processing 555/1029 atomic regions from SNP 166401 to 167001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,868 DEBUG Processing 635/904 atomic regions from SNP 190452 to 191052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,905 DEBUG Processing 439/653 atomic regions from SNP 131427 to 132027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,951 DEBUG Processing 661/862 atomic regions from SNP 198156 to 198756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,976 DEBUG Processing 522/1139 atomic regions from SNP 156533 to 157133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,006 DEBUG Processing 104/234 atomic regions from SNP 31029 to 31630 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,052 DEBUG Processing 556/1029 atomic regions from SNP 166701 to 167301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,121 DEBUG Processing 636/904 atomic regions from SNP 190752 to 191352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,177 DEBUG Processing 440/653 atomic regions from SNP 131727 to 132327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,202 DEBUG Processing 662/862 atomic regions from SNP 198456 to 199056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,244 DEBUG Processing 105/234 atomic regions from SNP 31330 to 31931 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,271 DEBUG Processing 523/1139 atomic regions from SNP 156833 to 157433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,320 DEBUG Processing 557/1029 atomic regions from SNP 167001 to 167601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,372 DEBUG Processing 637/904 atomic regions from SNP 191052 to 191652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,446 DEBUG Processing 441/653 atomic regions from SNP 132027 to 132627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,448 DEBUG Processing 663/862 atomic regions from SNP 198756 to 199356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,482 DEBUG Processing 106/234 atomic regions from SNP 31631 to 32232 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,569 DEBUG Processing 524/1139 atomic regions from SNP 157133 to 157733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,591 DEBUG Processing 558/1029 atomic regions from SNP 167301 to 167901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,625 DEBUG Processing 638/904 atomic regions from SNP 191352 to 191952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,692 DEBUG Processing 442/653 atomic regions from SNP 132327 to 132927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,696 DEBUG Processing 664/862 atomic regions from SNP 199056 to 199656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,719 DEBUG Processing 107/234 atomic regions from SNP 31932 to 32533 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,863 DEBUG Processing 559/1029 atomic regions from SNP 167601 to 168201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,868 DEBUG Processing 525/1139 atomic regions from SNP 157433 to 158033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,877 DEBUG Processing 639/904 atomic regions from SNP 191652 to 192252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,945 DEBUG Processing 443/653 atomic regions from SNP 132627 to 133227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,949 DEBUG Processing 665/862 atomic regions from SNP 199356 to 199956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,961 DEBUG Processing 108/234 atomic regions from SNP 32233 to 32834 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,127 DEBUG Processing 640/904 atomic regions from SNP 191952 to 192552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,130 DEBUG Processing 560/1029 atomic regions from SNP 167901 to 168501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,173 DEBUG Processing 526/1139 atomic regions from SNP 157733 to 158333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,194 DEBUG Processing 444/653 atomic regions from SNP 132927 to 133527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,203 DEBUG Processing 666/862 atomic regions from SNP 199656 to 200256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,206 DEBUG Processing 109/234 atomic regions from SNP 32534 to 33135 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,379 DEBUG Processing 641/904 atomic regions from SNP 192252 to 192852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,400 DEBUG Processing 561/1029 atomic regions from SNP 168201 to 168801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,449 DEBUG Processing 110/234 atomic regions from SNP 32835 to 33436 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,449 DEBUG Processing 445/653 atomic regions from SNP 133227 to 133827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,454 DEBUG Processing 667/862 atomic regions from SNP 199956 to 200556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,472 DEBUG Processing 527/1139 atomic regions from SNP 158033 to 158633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,628 DEBUG Processing 642/904 atomic regions from SNP 192552 to 193152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,670 DEBUG Processing 562/1029 atomic regions from SNP 168501 to 169101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,685 DEBUG Processing 111/234 atomic regions from SNP 33136 to 33737 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,698 DEBUG Processing 668/862 atomic regions from SNP 200256 to 200856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,699 DEBUG Processing 446/653 atomic regions from SNP 133527 to 134127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,767 DEBUG Processing 528/1139 atomic regions from SNP 158333 to 158933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,878 DEBUG Processing 643/904 atomic regions from SNP 192852 to 193452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,920 DEBUG Processing 112/234 atomic regions from SNP 33437 to 34038 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,939 DEBUG Processing 563/1029 atomic regions from SNP 168801 to 169401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,946 DEBUG Processing 447/653 atomic regions from SNP 133827 to 134427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,957 DEBUG Processing 669/862 atomic regions from SNP 200556 to 201156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,074 DEBUG Processing 529/1139 atomic regions from SNP 158633 to 159233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,129 DEBUG Processing 644/904 atomic regions from SNP 193152 to 193752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,157 DEBUG Processing 113/234 atomic regions from SNP 33738 to 34339 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,214 DEBUG Processing 564/1029 atomic regions from SNP 169101 to 169701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,217 DEBUG Processing 448/653 atomic regions from SNP 134127 to 134727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,232 DEBUG Processing 670/862 atomic regions from SNP 200856 to 201456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,381 DEBUG Processing 530/1139 atomic regions from SNP 158933 to 159533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,394 DEBUG Processing 645/904 atomic regions from SNP 193452 to 194052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,396 DEBUG Processing 114/234 atomic regions from SNP 34039 to 34640 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,487 DEBUG Processing 565/1029 atomic regions from SNP 169401 to 170001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,493 DEBUG Processing 449/653 atomic regions from SNP 134427 to 135027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,493 DEBUG Processing 671/862 atomic regions from SNP 201156 to 201756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,636 DEBUG Processing 115/234 atomic regions from SNP 34340 to 34941 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,667 DEBUG Processing 646/904 atomic regions from SNP 193752 to 194352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,700 DEBUG Processing 531/1139 atomic regions from SNP 159233 to 159833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,758 DEBUG Processing 450/653 atomic regions from SNP 134727 to 135327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,760 DEBUG Processing 566/1029 atomic regions from SNP 169701 to 170301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,770 DEBUG Processing 672/862 atomic regions from SNP 201456 to 202056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,870 DEBUG Processing 116/234 atomic regions from SNP 34641 to 35242 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,942 DEBUG Processing 647/904 atomic regions from SNP 194052 to 194652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,010 DEBUG Processing 451/653 atomic regions from SNP 135027 to 135627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,014 DEBUG Processing 532/1139 atomic regions from SNP 159533 to 160133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,039 DEBUG Processing 567/1029 atomic regions from SNP 170001 to 170601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,050 DEBUG Processing 673/862 atomic regions from SNP 201756 to 202356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,102 DEBUG Processing 117/234 atomic regions from SNP 34942 to 35543 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:28,192 DEBUG Processing 648/904 atomic regions from SNP 194352 to 194952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,258 DEBUG Processing 452/653 atomic regions from SNP 135327 to 135927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,321 DEBUG Processing 568/1029 atomic regions from SNP 170301 to 170901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,332 DEBUG Processing 674/862 atomic regions from SNP 202056 to 202656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,335 DEBUG Processing 533/1139 atomic regions from SNP 159833 to 160433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,344 DEBUG Processing 118/234 atomic regions from SNP 35243 to 35844 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:28,461 DEBUG Processing 649/904 atomic regions from SNP 194652 to 195252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,508 DEBUG Processing 453/653 atomic regions from SNP 135627 to 136227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,599 DEBUG Processing 119/234 atomic regions from SNP 35544 to 36145 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:28,607 DEBUG Processing 675/862 atomic regions from SNP 202356 to 202956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,616 DEBUG Processing 569/1029 atomic regions from SNP 170601 to 171201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,665 DEBUG Processing 534/1139 atomic regions from SNP 160133 to 160733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,748 DEBUG Processing 650/904 atomic regions from SNP 194952 to 195552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,749 DEBUG Processing 454/653 atomic regions from SNP 135927 to 136527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,850 DEBUG Processing 120/234 atomic regions from SNP 35845 to 36446 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:28,884 DEBUG Processing 676/862 atomic regions from SNP 202656 to 203256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,898 DEBUG Processing 570/1029 atomic regions from SNP 170901 to 171501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,981 DEBUG Processing 535/1139 atomic regions from SNP 160433 to 161033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,990 DEBUG Processing 455/653 atomic regions from SNP 136227 to 136827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,027 DEBUG Processing 651/904 atomic regions from SNP 195252 to 195852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,097 DEBUG Processing 121/234 atomic regions from SNP 36146 to 36747 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:29,165 DEBUG Processing 677/862 atomic regions from SNP 202956 to 203556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,170 DEBUG Processing 571/1029 atomic regions from SNP 171201 to 171801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,227 DEBUG Processing 456/653 atomic regions from SNP 136527 to 137127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,293 DEBUG Processing 536/1139 atomic regions from SNP 160733 to 161333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,306 DEBUG Processing 652/904 atomic regions from SNP 195552 to 196152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,341 DEBUG Processing 122/234 atomic regions from SNP 36447 to 37048 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:29,435 DEBUG Processing 678/862 atomic regions from SNP 203256 to 203856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,439 DEBUG Processing 572/1029 atomic regions from SNP 171501 to 172101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,477 DEBUG Processing 457/653 atomic regions from SNP 136827 to 137427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,574 DEBUG Processing 653/904 atomic regions from SNP 195852 to 196452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,589 DEBUG Processing 123/234 atomic regions from SNP 36748 to 37349 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:29,600 DEBUG Processing 537/1139 atomic regions from SNP 161033 to 161633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,702 DEBUG Processing 679/862 atomic regions from SNP 203556 to 204156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,706 DEBUG Processing 573/1029 atomic regions from SNP 171801 to 172401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,729 DEBUG Processing 458/653 atomic regions from SNP 137127 to 137727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,830 DEBUG Processing 654/904 atomic regions from SNP 196152 to 196752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,835 DEBUG Processing 124/234 atomic regions from SNP 37049 to 37650 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:29,886 DEBUG Processing 538/1139 atomic regions from SNP 161333 to 161933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,972 DEBUG Processing 680/862 atomic regions from SNP 203856 to 204456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,977 DEBUG Processing 574/1029 atomic regions from SNP 172101 to 172701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,982 DEBUG Processing 459/653 atomic regions from SNP 137427 to 138027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,077 DEBUG Processing 125/234 atomic regions from SNP 37350 to 37951 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:30,078 DEBUG Processing 655/904 atomic regions from SNP 196452 to 197052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,167 DEBUG Processing 539/1139 atomic regions from SNP 161633 to 162233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,241 DEBUG Processing 460/653 atomic regions from SNP 137727 to 138327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,248 DEBUG Processing 681/862 atomic regions from SNP 204156 to 204756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,253 DEBUG Processing 575/1029 atomic regions from SNP 172401 to 173001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,309 DEBUG Processing 126/234 atomic regions from SNP 37651 to 38252 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:30,327 DEBUG Processing 656/904 atomic regions from SNP 196752 to 197352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,452 DEBUG Processing 540/1139 atomic regions from SNP 161933 to 162533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,499 DEBUG Processing 461/653 atomic regions from SNP 138027 to 138627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,532 DEBUG Processing 682/862 atomic regions from SNP 204456 to 205056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,542 DEBUG Processing 576/1029 atomic regions from SNP 172701 to 173301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,554 DEBUG Processing 127/234 atomic regions from SNP 37952 to 38553 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:30,580 DEBUG Processing 657/904 atomic regions from SNP 197052 to 197652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,729 DEBUG Processing 541/1139 atomic regions from SNP 162233 to 162833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,769 DEBUG Processing 462/653 atomic regions from SNP 138327 to 138927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,809 DEBUG Processing 128/234 atomic regions from SNP 38253 to 38854 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:30,825 DEBUG Processing 683/862 atomic regions from SNP 204756 to 205356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,832 DEBUG Processing 577/1029 atomic regions from SNP 173001 to 173601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,845 DEBUG Processing 658/904 atomic regions from SNP 197352 to 197952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,006 DEBUG Processing 542/1139 atomic regions from SNP 162533 to 163133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,040 DEBUG Processing 463/653 atomic regions from SNP 138627 to 139227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,062 DEBUG Processing 129/234 atomic regions from SNP 38554 to 39155 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:31,113 DEBUG Processing 659/904 atomic regions from SNP 197652 to 198252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,120 DEBUG Processing 684/862 atomic regions from SNP 205056 to 205656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,129 DEBUG Processing 578/1029 atomic regions from SNP 173301 to 173901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,292 DEBUG Processing 543/1139 atomic regions from SNP 162833 to 163433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,316 DEBUG Processing 464/653 atomic regions from SNP 138927 to 139527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,320 DEBUG Processing 130/234 atomic regions from SNP 38855 to 39456 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:31,390 DEBUG Processing 660/904 atomic regions from SNP 197952 to 198552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,408 DEBUG Processing 685/862 atomic regions from SNP 205356 to 205956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,425 DEBUG Processing 579/1029 atomic regions from SNP 173601 to 174201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,560 DEBUG Processing 131/234 atomic regions from SNP 39156 to 39757 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:31,563 DEBUG Processing 465/653 atomic regions from SNP 139227 to 139827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,569 DEBUG Processing 544/1139 atomic regions from SNP 163133 to 163733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,656 DEBUG Processing 661/904 atomic regions from SNP 198252 to 198852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,694 DEBUG Processing 686/862 atomic regions from SNP 205656 to 206256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,706 DEBUG Processing 580/1029 atomic regions from SNP 173901 to 174501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,794 DEBUG Processing 132/234 atomic regions from SNP 39457 to 40058 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:31,803 DEBUG Processing 466/653 atomic regions from SNP 139527 to 140127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,848 DEBUG Processing 545/1139 atomic regions from SNP 163433 to 164033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,917 DEBUG Processing 662/904 atomic regions from SNP 198552 to 199152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,978 DEBUG Processing 687/862 atomic regions from SNP 205956 to 206556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,987 DEBUG Processing 581/1029 atomic regions from SNP 174201 to 174801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,030 DEBUG Processing 133/234 atomic regions from SNP 39758 to 40359 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:32,046 DEBUG Processing 467/653 atomic regions from SNP 139827 to 140427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,125 DEBUG Processing 546/1139 atomic regions from SNP 163733 to 164333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,173 DEBUG Processing 663/904 atomic regions from SNP 198852 to 199452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,264 DEBUG Processing 688/862 atomic regions from SNP 206256 to 206856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,269 DEBUG Processing 582/1029 atomic regions from SNP 174501 to 175101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,272 DEBUG Processing 134/234 atomic regions from SNP 40059 to 40660 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:32,309 DEBUG Processing 468/653 atomic regions from SNP 140127 to 140727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,409 DEBUG Processing 547/1139 atomic regions from SNP 164033 to 164633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,429 DEBUG Processing 664/904 atomic regions from SNP 199152 to 199752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,518 DEBUG Processing 135/234 atomic regions from SNP 40360 to 40961 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:32,547 DEBUG Processing 689/862 atomic regions from SNP 206556 to 207156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,552 DEBUG Processing 583/1029 atomic regions from SNP 174801 to 175401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,591 DEBUG Processing 469/653 atomic regions from SNP 140427 to 141027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,682 DEBUG Processing 665/904 atomic regions from SNP 199452 to 200052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,690 DEBUG Processing 548/1139 atomic regions from SNP 164333 to 164933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,756 DEBUG Processing 136/234 atomic regions from SNP 40661 to 41262 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:32,816 DEBUG Processing 690/862 atomic regions from SNP 206856 to 207456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,831 DEBUG Processing 584/1029 atomic regions from SNP 175101 to 175701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,855 DEBUG Processing 470/653 atomic regions from SNP 140727 to 141327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,938 DEBUG Processing 666/904 atomic regions from SNP 199752 to 200352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,974 DEBUG Processing 549/1139 atomic regions from SNP 164633 to 165233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,993 DEBUG Processing 137/234 atomic regions from SNP 40962 to 41563 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:33,074 DEBUG Processing 691/862 atomic regions from SNP 207156 to 207756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,103 DEBUG Processing 585/1029 atomic regions from SNP 175401 to 176001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,122 DEBUG Processing 471/653 atomic regions from SNP 141027 to 141627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,196 DEBUG Processing 667/904 atomic regions from SNP 200052 to 200652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,237 DEBUG Processing 138/234 atomic regions from SNP 41263 to 41864 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:33,264 DEBUG Processing 550/1139 atomic regions from SNP 164933 to 165533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,327 DEBUG Processing 692/862 atomic regions from SNP 207456 to 208056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,371 DEBUG Processing 472/653 atomic regions from SNP 141327 to 141927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,372 DEBUG Processing 586/1029 atomic regions from SNP 175701 to 176301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,456 DEBUG Processing 668/904 atomic regions from SNP 200352 to 200952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,484 DEBUG Processing 139/234 atomic regions from SNP 41564 to 42165 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:33,558 DEBUG Processing 551/1139 atomic regions from SNP 165233 to 165833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,590 DEBUG Processing 693/862 atomic regions from SNP 207756 to 208356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,621 DEBUG Processing 473/653 atomic regions from SNP 141627 to 142227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,643 DEBUG Processing 587/1029 atomic regions from SNP 176001 to 176601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,712 DEBUG Processing 669/904 atomic regions from SNP 200652 to 201252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,729 DEBUG Processing 140/234 atomic regions from SNP 41865 to 42466 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:33,838 DEBUG Processing 552/1139 atomic regions from SNP 165533 to 166133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,868 DEBUG Processing 694/862 atomic regions from SNP 208056 to 208656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,870 DEBUG Processing 474/653 atomic regions from SNP 141927 to 142527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,916 DEBUG Processing 588/1029 atomic regions from SNP 176301 to 176901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,973 DEBUG Processing 141/234 atomic regions from SNP 42166 to 42767 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:33,975 DEBUG Processing 670/904 atomic regions from SNP 200952 to 201552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,115 DEBUG Processing 553/1139 atomic regions from SNP 165833 to 166433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,117 DEBUG Processing 475/653 atomic regions from SNP 142227 to 142827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,149 DEBUG Processing 695/862 atomic regions from SNP 208356 to 208956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,196 DEBUG Processing 589/1029 atomic regions from SNP 176601 to 177201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,217 DEBUG Processing 142/234 atomic regions from SNP 42467 to 43068 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:34,233 DEBUG Processing 671/904 atomic regions from SNP 201252 to 201852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,368 DEBUG Processing 476/653 atomic regions from SNP 142527 to 143127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,394 DEBUG Processing 554/1139 atomic regions from SNP 166133 to 166733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,433 DEBUG Processing 696/862 atomic regions from SNP 208656 to 209256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,462 DEBUG Processing 143/234 atomic regions from SNP 42768 to 43369 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:34,479 DEBUG Processing 590/1029 atomic regions from SNP 176901 to 177501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,490 DEBUG Processing 672/904 atomic regions from SNP 201552 to 202152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,632 DEBUG Processing 477/653 atomic regions from SNP 142827 to 143427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,674 DEBUG Processing 555/1139 atomic regions from SNP 166433 to 167033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,705 DEBUG Processing 144/234 atomic regions from SNP 43069 to 43670 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:34,722 DEBUG Processing 697/862 atomic regions from SNP 208956 to 209556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,748 DEBUG Processing 673/904 atomic regions from SNP 201852 to 202452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,763 DEBUG Processing 591/1029 atomic regions from SNP 177201 to 177801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,908 DEBUG Processing 478/653 atomic regions from SNP 143127 to 143727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,949 DEBUG Processing 145/234 atomic regions from SNP 43370 to 43971 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:34,961 DEBUG Processing 556/1139 atomic regions from SNP 166733 to 167333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,998 DEBUG Processing 698/862 atomic regions from SNP 209256 to 209856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,002 DEBUG Processing 674/904 atomic regions from SNP 202152 to 202752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,036 DEBUG Processing 592/1029 atomic regions from SNP 177501 to 178101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,182 DEBUG Processing 479/653 atomic regions from SNP 143427 to 144027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,194 DEBUG Processing 146/234 atomic regions from SNP 43671 to 44272 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:35,257 DEBUG Processing 675/904 atomic regions from SNP 202452 to 203052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,265 DEBUG Processing 557/1139 atomic regions from SNP 167033 to 167633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,269 DEBUG Processing 699/862 atomic regions from SNP 209556 to 210156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,307 DEBUG Processing 593/1029 atomic regions from SNP 177801 to 178401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,432 DEBUG Processing 480/653 atomic regions from SNP 143727 to 144327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,437 DEBUG Processing 147/234 atomic regions from SNP 43972 to 44573 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:35,508 DEBUG Processing 676/904 atomic regions from SNP 202752 to 203352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,527 DEBUG Processing 700/862 atomic regions from SNP 209856 to 210456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,561 DEBUG Processing 558/1139 atomic regions from SNP 167333 to 167933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,596 DEBUG Processing 594/1029 atomic regions from SNP 178101 to 178701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,680 DEBUG Processing 148/234 atomic regions from SNP 44273 to 44874 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:35,688 DEBUG Processing 481/653 atomic regions from SNP 144027 to 144627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,761 DEBUG Processing 677/904 atomic regions from SNP 203052 to 203652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,792 DEBUG Processing 701/862 atomic regions from SNP 210156 to 210756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,841 DEBUG Processing 559/1139 atomic regions from SNP 167633 to 168233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,892 DEBUG Processing 595/1029 atomic regions from SNP 178401 to 179001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,921 DEBUG Processing 149/234 atomic regions from SNP 44574 to 45175 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:35,933 DEBUG Processing 482/653 atomic regions from SNP 144327 to 144927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,033 DEBUG Processing 678/904 atomic regions from SNP 203352 to 203952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,070 DEBUG Processing 702/862 atomic regions from SNP 210456 to 211056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,122 DEBUG Processing 560/1139 atomic regions from SNP 167933 to 168533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,163 DEBUG Processing 150/234 atomic regions from SNP 44875 to 45476 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:36,193 DEBUG Processing 483/653 atomic regions from SNP 144627 to 145227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,197 DEBUG Processing 596/1029 atomic regions from SNP 178701 to 179301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,315 DEBUG Processing 679/904 atomic regions from SNP 203652 to 204252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,353 DEBUG Processing 703/862 atomic regions from SNP 210756 to 211356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,406 DEBUG Processing 151/234 atomic regions from SNP 45176 to 45777 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:36,408 DEBUG Processing 561/1139 atomic regions from SNP 168233 to 168833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,453 DEBUG Processing 484/653 atomic regions from SNP 144927 to 145527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,505 DEBUG Processing 597/1029 atomic regions from SNP 179001 to 179601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,584 DEBUG Processing 680/904 atomic regions from SNP 203952 to 204552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,615 DEBUG Processing 704/862 atomic regions from SNP 211056 to 211656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,651 DEBUG Processing 152/234 atomic regions from SNP 45477 to 46078 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:36,695 DEBUG Processing 562/1139 atomic regions from SNP 168533 to 169133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,715 DEBUG Processing 485/653 atomic regions from SNP 145227 to 145827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,798 DEBUG Processing 598/1029 atomic regions from SNP 179301 to 179901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,843 DEBUG Processing 681/904 atomic regions from SNP 204252 to 204852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,864 DEBUG Processing 705/862 atomic regions from SNP 211356 to 211956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,893 DEBUG Processing 153/234 atomic regions from SNP 45778 to 46379 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:36,965 DEBUG Processing 486/653 atomic regions from SNP 145527 to 146127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,981 DEBUG Processing 563/1139 atomic regions from SNP 168833 to 169433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,080 DEBUG Processing 599/1029 atomic regions from SNP 179601 to 180201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,107 DEBUG Processing 706/862 atomic regions from SNP 211656 to 212256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,113 DEBUG Processing 682/904 atomic regions from SNP 204552 to 205152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,132 DEBUG Processing 154/234 atomic regions from SNP 46079 to 46680 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:37,217 DEBUG Processing 487/653 atomic regions from SNP 145827 to 146427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,269 DEBUG Processing 564/1139 atomic regions from SNP 169133 to 169733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,349 DEBUG Processing 707/862 atomic regions from SNP 211956 to 212556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,355 DEBUG Processing 600/1029 atomic regions from SNP 179901 to 180501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,368 DEBUG Processing 155/234 atomic regions from SNP 46380 to 46981 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:37,376 DEBUG Processing 683/904 atomic regions from SNP 204852 to 205452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,465 DEBUG Processing 488/653 atomic regions from SNP 146127 to 146727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,555 DEBUG Processing 565/1139 atomic regions from SNP 169433 to 170033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,600 DEBUG Processing 708/862 atomic regions from SNP 212256 to 212856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,611 DEBUG Processing 156/234 atomic regions from SNP 46681 to 47282 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:37,633 DEBUG Processing 601/1029 atomic regions from SNP 180201 to 180801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,650 DEBUG Processing 684/904 atomic regions from SNP 205152 to 205752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,708 DEBUG Processing 489/653 atomic regions from SNP 146427 to 147027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,838 DEBUG Processing 566/1139 atomic regions from SNP 169733 to 170333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,848 DEBUG Processing 709/862 atomic regions from SNP 212556 to 213156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,854 DEBUG Processing 157/234 atomic regions from SNP 46982 to 47583 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:37,914 DEBUG Processing 602/1029 atomic regions from SNP 180501 to 181101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,943 DEBUG Processing 685/904 atomic regions from SNP 205452 to 206052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,950 DEBUG Processing 490/653 atomic regions from SNP 146727 to 147327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,096 DEBUG Processing 158/234 atomic regions from SNP 47283 to 47884 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:38,099 DEBUG Processing 710/862 atomic regions from SNP 212856 to 213456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,120 DEBUG Processing 567/1139 atomic regions from SNP 170033 to 170633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,198 DEBUG Processing 603/1029 atomic regions from SNP 180801 to 181401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,203 DEBUG Processing 491/653 atomic regions from SNP 147027 to 147627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,229 DEBUG Processing 686/904 atomic regions from SNP 205752 to 206352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,337 DEBUG Processing 159/234 atomic regions from SNP 47584 to 48185 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:38,347 DEBUG Processing 711/862 atomic regions from SNP 213156 to 213756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,406 DEBUG Processing 568/1139 atomic regions from SNP 170333 to 170933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,458 DEBUG Processing 492/653 atomic regions from SNP 147327 to 147927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,482 DEBUG Processing 604/1029 atomic regions from SNP 181101 to 181701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,501 DEBUG Processing 687/904 atomic regions from SNP 206052 to 206652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,566 DEBUG Processing 160/234 atomic regions from SNP 47885 to 48486 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:38,585 DEBUG Processing 712/862 atomic regions from SNP 213456 to 214056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,689 DEBUG Processing 569/1139 atomic regions from SNP 170633 to 171233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,720 DEBUG Processing 493/653 atomic regions from SNP 147627 to 148227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,761 DEBUG Processing 688/904 atomic regions from SNP 206352 to 206952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,768 DEBUG Processing 605/1029 atomic regions from SNP 181401 to 182001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,803 DEBUG Processing 161/234 atomic regions from SNP 48186 to 48787 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:38,825 DEBUG Processing 713/862 atomic regions from SNP 213756 to 214356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,970 DEBUG Processing 570/1139 atomic regions from SNP 170933 to 171533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,996 DEBUG Processing 494/653 atomic regions from SNP 147927 to 148527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,040 DEBUG Processing 689/904 atomic regions from SNP 206652 to 207252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,049 DEBUG Processing 162/234 atomic regions from SNP 48487 to 49088 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:39,054 DEBUG Processing 606/1029 atomic regions from SNP 181701 to 182301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,081 DEBUG Processing 714/862 atomic regions from SNP 214056 to 214656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,251 DEBUG Processing 571/1139 atomic regions from SNP 171233 to 171833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,271 DEBUG Processing 495/653 atomic regions from SNP 148227 to 148827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,299 DEBUG Processing 163/234 atomic regions from SNP 48788 to 49389 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:39,334 DEBUG Processing 690/904 atomic regions from SNP 206952 to 207552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,337 DEBUG Processing 715/862 atomic regions from SNP 214356 to 214956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,343 DEBUG Processing 607/1029 atomic regions from SNP 182001 to 182601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,531 DEBUG Processing 572/1139 atomic regions from SNP 171533 to 172133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,544 DEBUG Processing 164/234 atomic regions from SNP 49089 to 49690 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:39,548 DEBUG Processing 496/653 atomic regions from SNP 148527 to 149127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,597 DEBUG Processing 716/862 atomic regions from SNP 214656 to 215256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,609 DEBUG Processing 691/904 atomic regions from SNP 207252 to 207852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,631 DEBUG Processing 608/1029 atomic regions from SNP 182301 to 182901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,791 DEBUG Processing 165/234 atomic regions from SNP 49390 to 49991 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:39,823 DEBUG Processing 573/1139 atomic regions from SNP 171833 to 172433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,836 DEBUG Processing 497/653 atomic regions from SNP 148827 to 149427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,866 DEBUG Processing 717/862 atomic regions from SNP 214956 to 215556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,901 DEBUG Processing 692/904 atomic regions from SNP 207552 to 208152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,927 DEBUG Processing 609/1029 atomic regions from SNP 182601 to 183201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,026 DEBUG Processing 166/234 atomic regions from SNP 49691 to 50292 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:40,098 DEBUG Processing 498/653 atomic regions from SNP 149127 to 149727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,099 DEBUG Processing 574/1139 atomic regions from SNP 172133 to 172733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,109 DEBUG Processing 718/862 atomic regions from SNP 215256 to 215856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,171 DEBUG Processing 693/904 atomic regions from SNP 207852 to 208452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,213 DEBUG Processing 610/1029 atomic regions from SNP 182901 to 183501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,267 DEBUG Processing 167/234 atomic regions from SNP 49992 to 50593 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:40,345 DEBUG Processing 719/862 atomic regions from SNP 215556 to 216156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,361 DEBUG Processing 499/653 atomic regions from SNP 149427 to 150027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,370 DEBUG Processing 575/1139 atomic regions from SNP 172433 to 173033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,431 DEBUG Processing 694/904 atomic regions from SNP 208152 to 208752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,500 DEBUG Processing 611/1029 atomic regions from SNP 183201 to 183801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,512 DEBUG Processing 168/234 atomic regions from SNP 50293 to 50894 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:40,585 DEBUG Processing 720/862 atomic regions from SNP 215856 to 216456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,631 DEBUG Processing 500/653 atomic regions from SNP 149727 to 150327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,646 DEBUG Processing 576/1139 atomic regions from SNP 172733 to 173333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,682 DEBUG Processing 695/904 atomic regions from SNP 208452 to 209052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,758 DEBUG Processing 169/234 atomic regions from SNP 50594 to 51195 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:40,781 DEBUG Processing 612/1029 atomic regions from SNP 183501 to 184101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,827 DEBUG Processing 721/862 atomic regions from SNP 216156 to 216756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,887 DEBUG Processing 501/653 atomic regions from SNP 150027 to 150627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,924 DEBUG Processing 577/1139 atomic regions from SNP 173033 to 173633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,934 DEBUG Processing 696/904 atomic regions from SNP 208752 to 209352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,002 DEBUG Processing 170/234 atomic regions from SNP 50895 to 51496 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:41,058 DEBUG Processing 613/1029 atomic regions from SNP 183801 to 184401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,074 DEBUG Processing 722/862 atomic regions from SNP 216456 to 217056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,146 DEBUG Processing 502/653 atomic regions from SNP 150327 to 150927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,190 DEBUG Processing 697/904 atomic regions from SNP 209052 to 209652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,204 DEBUG Processing 578/1139 atomic regions from SNP 173333 to 173933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,241 DEBUG Processing 171/234 atomic regions from SNP 51196 to 51797 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:41,319 DEBUG Processing 723/862 atomic regions from SNP 216756 to 217356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,327 DEBUG Processing 614/1029 atomic regions from SNP 184101 to 184701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,405 DEBUG Processing 503/653 atomic regions from SNP 150627 to 151227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,451 DEBUG Processing 698/904 atomic regions from SNP 209352 to 209952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,481 DEBUG Processing 172/234 atomic regions from SNP 51497 to 52098 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:41,489 DEBUG Processing 579/1139 atomic regions from SNP 173633 to 174233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,557 DEBUG Processing 724/862 atomic regions from SNP 217056 to 217656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,595 DEBUG Processing 615/1029 atomic regions from SNP 184401 to 185001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,667 DEBUG Processing 504/653 atomic regions from SNP 150927 to 151527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,708 DEBUG Processing 699/904 atomic regions from SNP 209652 to 210252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,725 DEBUG Processing 173/234 atomic regions from SNP 51798 to 52399 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:41,775 DEBUG Processing 580/1139 atomic regions from SNP 173933 to 174533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,820 DEBUG Processing 725/862 atomic regions from SNP 217356 to 217956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,864 DEBUG Processing 616/1029 atomic regions from SNP 184701 to 185301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,934 DEBUG Processing 505/653 atomic regions from SNP 151227 to 151827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,971 DEBUG Processing 700/904 atomic regions from SNP 209952 to 210552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,978 DEBUG Processing 174/234 atomic regions from SNP 52099 to 52700 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:42,053 DEBUG Processing 581/1139 atomic regions from SNP 174233 to 174833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,065 DEBUG Processing 726/862 atomic regions from SNP 217656 to 218256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,135 DEBUG Processing 617/1029 atomic regions from SNP 185001 to 185601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,193 DEBUG Processing 506/653 atomic regions from SNP 151527 to 152127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,223 DEBUG Processing 175/234 atomic regions from SNP 52400 to 53001 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:42,229 DEBUG Processing 701/904 atomic regions from SNP 210252 to 210852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,308 DEBUG Processing 727/862 atomic regions from SNP 217956 to 218556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,333 DEBUG Processing 582/1139 atomic regions from SNP 174533 to 175133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,405 DEBUG Processing 618/1029 atomic regions from SNP 185301 to 185901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,455 DEBUG Processing 507/653 atomic regions from SNP 151827 to 152427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,466 DEBUG Processing 176/234 atomic regions from SNP 52701 to 53302 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:42,488 DEBUG Processing 702/904 atomic regions from SNP 210552 to 211152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,563 DEBUG Processing 728/862 atomic regions from SNP 218256 to 218856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,618 DEBUG Processing 583/1139 atomic regions from SNP 174833 to 175433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,687 DEBUG Processing 619/1029 atomic regions from SNP 185601 to 186201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,710 DEBUG Processing 508/653 atomic regions from SNP 152127 to 152727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,713 DEBUG Processing 177/234 atomic regions from SNP 53002 to 53603 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:42,750 DEBUG Processing 703/904 atomic regions from SNP 210852 to 211452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,838 DEBUG Processing 729/862 atomic regions from SNP 218556 to 219156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,909 DEBUG Processing 584/1139 atomic regions from SNP 175133 to 175733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,956 DEBUG Processing 178/234 atomic regions from SNP 53303 to 53904 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:42,961 DEBUG Processing 509/653 atomic regions from SNP 152427 to 153027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,969 DEBUG Processing 620/1029 atomic regions from SNP 185901 to 186501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,005 DEBUG Processing 704/904 atomic regions from SNP 211152 to 211752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,117 DEBUG Processing 730/862 atomic regions from SNP 218856 to 219456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,188 DEBUG Processing 585/1139 atomic regions from SNP 175433 to 176033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,198 DEBUG Processing 179/234 atomic regions from SNP 53604 to 54205 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:43,209 DEBUG Processing 510/653 atomic regions from SNP 152727 to 153327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,246 DEBUG Processing 621/1029 atomic regions from SNP 186201 to 186801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,261 DEBUG Processing 705/904 atomic regions from SNP 211452 to 212052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,399 DEBUG Processing 731/862 atomic regions from SNP 219156 to 219756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,443 DEBUG Processing 180/234 atomic regions from SNP 53905 to 54506 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:43,467 DEBUG Processing 511/653 atomic regions from SNP 153027 to 153627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,471 DEBUG Processing 586/1139 atomic regions from SNP 175733 to 176333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,515 DEBUG Processing 706/904 atomic regions from SNP 211752 to 212352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,526 DEBUG Processing 622/1029 atomic regions from SNP 186501 to 187101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,682 DEBUG Processing 732/862 atomic regions from SNP 219456 to 220056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,682 DEBUG Processing 181/234 atomic regions from SNP 54206 to 54807 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:43,740 DEBUG Processing 512/653 atomic regions from SNP 153327 to 153927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,757 DEBUG Processing 587/1139 atomic regions from SNP 176033 to 176633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,769 DEBUG Processing 707/904 atomic regions from SNP 212052 to 212652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,800 DEBUG Processing 623/1029 atomic regions from SNP 186801 to 187401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,918 DEBUG Processing 182/234 atomic regions from SNP 54507 to 55108 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:43,949 DEBUG Processing 733/862 atomic regions from SNP 219756 to 220356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,017 DEBUG Processing 513/653 atomic regions from SNP 153627 to 154227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,023 DEBUG Processing 708/904 atomic regions from SNP 212352 to 212952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,038 DEBUG Processing 588/1139 atomic regions from SNP 176333 to 176933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,069 DEBUG Processing 624/1029 atomic regions from SNP 187101 to 187701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,154 DEBUG Processing 183/234 atomic regions from SNP 54808 to 55409 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:44,193 DEBUG Processing 734/862 atomic regions from SNP 220056 to 220656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,273 DEBUG Processing 709/904 atomic regions from SNP 212652 to 213252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,288 DEBUG Processing 514/653 atomic regions from SNP 153927 to 154527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,315 DEBUG Processing 589/1139 atomic regions from SNP 176633 to 177233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,336 DEBUG Processing 625/1029 atomic regions from SNP 187401 to 188001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,390 DEBUG Processing 184/234 atomic regions from SNP 55109 to 55710 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:44,436 DEBUG Processing 735/862 atomic regions from SNP 220356 to 220956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,523 DEBUG Processing 710/904 atomic regions from SNP 212952 to 213552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,567 DEBUG Processing 515/653 atomic regions from SNP 154227 to 154827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,594 DEBUG Processing 590/1139 atomic regions from SNP 176933 to 177533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,610 DEBUG Processing 626/1029 atomic regions from SNP 187701 to 188301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,627 DEBUG Processing 185/234 atomic regions from SNP 55410 to 56011 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:44,678 DEBUG Processing 736/862 atomic regions from SNP 220656 to 221256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,773 DEBUG Processing 711/904 atomic regions from SNP 213252 to 213852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,848 DEBUG Processing 516/653 atomic regions from SNP 154527 to 155127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,868 DEBUG Processing 186/234 atomic regions from SNP 55711 to 56312 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:44,878 DEBUG Processing 591/1139 atomic regions from SNP 177233 to 177833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,886 DEBUG Processing 627/1029 atomic regions from SNP 188001 to 188601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,920 DEBUG Processing 737/862 atomic regions from SNP 220956 to 221556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,026 DEBUG Processing 712/904 atomic regions from SNP 213552 to 214152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,117 DEBUG Processing 187/234 atomic regions from SNP 56012 to 56613 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:45,129 DEBUG Processing 517/653 atomic regions from SNP 154827 to 155427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,163 DEBUG Processing 592/1139 atomic regions from SNP 177533 to 178133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,164 DEBUG Processing 628/1029 atomic regions from SNP 188301 to 188901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,166 DEBUG Processing 738/862 atomic regions from SNP 221256 to 221856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,269 DEBUG Processing 713/904 atomic regions from SNP 213852 to 214452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,366 DEBUG Processing 188/234 atomic regions from SNP 56313 to 56914 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:45,406 DEBUG Processing 518/653 atomic regions from SNP 155127 to 155727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,418 DEBUG Processing 739/862 atomic regions from SNP 221556 to 222156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,445 DEBUG Processing 629/1029 atomic regions from SNP 188601 to 189201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,448 DEBUG Processing 593/1139 atomic regions from SNP 177833 to 178433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,510 DEBUG Processing 714/904 atomic regions from SNP 214152 to 214752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,613 DEBUG Processing 189/234 atomic regions from SNP 56614 to 57215 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:45,673 DEBUG Processing 740/862 atomic regions from SNP 221856 to 222456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,682 DEBUG Processing 519/653 atomic regions from SNP 155427 to 156027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,723 DEBUG Processing 630/1029 atomic regions from SNP 188901 to 189501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,731 DEBUG Processing 594/1139 atomic regions from SNP 178133 to 178733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,771 DEBUG Processing 715/904 atomic regions from SNP 214452 to 215052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,851 DEBUG Processing 190/234 atomic regions from SNP 56915 to 57516 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:45,923 DEBUG Processing 741/862 atomic regions from SNP 222156 to 222756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,955 DEBUG Processing 520/653 atomic regions from SNP 155727 to 156327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,996 DEBUG Processing 631/1029 atomic regions from SNP 189201 to 189801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,009 DEBUG Processing 595/1139 atomic regions from SNP 178433 to 179033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,042 DEBUG Processing 716/904 atomic regions from SNP 214752 to 215352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,082 DEBUG Processing 191/234 atomic regions from SNP 57216 to 57817 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:46,169 DEBUG Processing 742/862 atomic regions from SNP 222456 to 223056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,224 DEBUG Processing 521/653 atomic regions from SNP 156027 to 156627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,270 DEBUG Processing 632/1029 atomic regions from SNP 189501 to 190101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,287 DEBUG Processing 596/1139 atomic regions from SNP 178733 to 179333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,314 DEBUG Processing 192/234 atomic regions from SNP 57517 to 58118 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:46,327 DEBUG Processing 717/904 atomic regions from SNP 215052 to 215652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,413 DEBUG Processing 743/862 atomic regions from SNP 222756 to 223356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,501 DEBUG Processing 522/653 atomic regions from SNP 156327 to 156927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,544 DEBUG Processing 633/1029 atomic regions from SNP 189801 to 190401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,562 DEBUG Processing 193/234 atomic regions from SNP 57818 to 58419 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:46,566 DEBUG Processing 597/1139 atomic regions from SNP 179033 to 179633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,601 DEBUG Processing 718/904 atomic regions from SNP 215352 to 215952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,654 DEBUG Processing 744/862 atomic regions from SNP 223056 to 223656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,773 DEBUG Processing 523/653 atomic regions from SNP 156627 to 157227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,815 DEBUG Processing 634/1029 atomic regions from SNP 190101 to 190701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,816 DEBUG Processing 194/234 atomic regions from SNP 58119 to 58720 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:46,836 DEBUG Processing 598/1139 atomic regions from SNP 179333 to 179933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,878 DEBUG Processing 719/904 atomic regions from SNP 215652 to 216252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,892 DEBUG Processing 745/862 atomic regions from SNP 223356 to 223956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,043 DEBUG Processing 524/653 atomic regions from SNP 156927 to 157527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,051 DEBUG Processing 195/234 atomic regions from SNP 58420 to 59021 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:47,084 DEBUG Processing 635/1029 atomic regions from SNP 190401 to 191001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,109 DEBUG Processing 599/1139 atomic regions from SNP 179633 to 180233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,131 DEBUG Processing 746/862 atomic regions from SNP 223656 to 224256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,138 DEBUG Processing 720/904 atomic regions from SNP 215952 to 216552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,283 DEBUG Processing 196/234 atomic regions from SNP 58721 to 59322 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:47,321 DEBUG Processing 525/653 atomic regions from SNP 157227 to 157827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,352 DEBUG Processing 636/1029 atomic regions from SNP 190701 to 191301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,374 DEBUG Processing 747/862 atomic regions from SNP 223956 to 224556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,384 DEBUG Processing 600/1139 atomic regions from SNP 179933 to 180533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,389 DEBUG Processing 721/904 atomic regions from SNP 216252 to 216852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,512 DEBUG Processing 197/234 atomic regions from SNP 59022 to 59623 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:47,584 DEBUG Processing 526/653 atomic regions from SNP 157527 to 158127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,623 DEBUG Processing 637/1029 atomic regions from SNP 191001 to 191601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,624 DEBUG Processing 748/862 atomic regions from SNP 224256 to 224856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,646 DEBUG Processing 722/904 atomic regions from SNP 216552 to 217152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,670 DEBUG Processing 601/1139 atomic regions from SNP 180233 to 180833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,740 DEBUG Processing 198/234 atomic regions from SNP 59323 to 59924 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:47,845 DEBUG Processing 527/653 atomic regions from SNP 157827 to 158427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,869 DEBUG Processing 749/862 atomic regions from SNP 224556 to 225156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,900 DEBUG Processing 638/1029 atomic regions from SNP 191301 to 191901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,904 DEBUG Processing 723/904 atomic regions from SNP 216852 to 217452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,961 DEBUG Processing 602/1139 atomic regions from SNP 180533 to 181133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,986 DEBUG Processing 199/234 atomic regions from SNP 59624 to 60225 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:48,121 DEBUG Processing 750/862 atomic regions from SNP 224856 to 225456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,124 DEBUG Processing 528/653 atomic regions from SNP 158127 to 158727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,165 DEBUG Processing 724/904 atomic regions from SNP 217152 to 217752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,181 DEBUG Processing 639/1029 atomic regions from SNP 191601 to 192201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,239 DEBUG Processing 200/234 atomic regions from SNP 59925 to 60526 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:48,258 DEBUG Processing 603/1139 atomic regions from SNP 180833 to 181433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,359 DEBUG Processing 751/862 atomic regions from SNP 225156 to 225756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,391 DEBUG Processing 529/653 atomic regions from SNP 158427 to 159027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,410 DEBUG Processing 725/904 atomic regions from SNP 217452 to 218052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,449 DEBUG Processing 640/1029 atomic regions from SNP 191901 to 192501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,509 DEBUG Processing 201/234 atomic regions from SNP 60226 to 60827 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:48,569 DEBUG Processing 604/1139 atomic regions from SNP 181133 to 181733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,607 DEBUG Processing 752/862 atomic regions from SNP 225456 to 226056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,656 DEBUG Processing 726/904 atomic regions from SNP 217752 to 218352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,667 DEBUG Processing 530/653 atomic regions from SNP 158727 to 159327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,721 DEBUG Processing 641/1029 atomic regions from SNP 192201 to 192801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,771 DEBUG Processing 202/234 atomic regions from SNP 60527 to 61128 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:48,859 DEBUG Processing 753/862 atomic regions from SNP 225756 to 226356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,887 DEBUG Processing 605/1139 atomic regions from SNP 181433 to 182033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,906 DEBUG Processing 727/904 atomic regions from SNP 218052 to 218652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,942 DEBUG Processing 531/653 atomic regions from SNP 159027 to 159627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,992 DEBUG Processing 642/1029 atomic regions from SNP 192501 to 193101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,012 DEBUG Processing 203/234 atomic regions from SNP 60828 to 61429 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:49,109 DEBUG Processing 754/862 atomic regions from SNP 226056 to 226656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,169 DEBUG Processing 728/904 atomic regions from SNP 218352 to 218952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,190 DEBUG Processing 606/1139 atomic regions from SNP 181733 to 182333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,225 DEBUG Processing 532/653 atomic regions from SNP 159327 to 159927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,250 DEBUG Processing 204/234 atomic regions from SNP 61129 to 61730 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:49,263 DEBUG Processing 643/1029 atomic regions from SNP 192801 to 193401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,351 DEBUG Processing 755/862 atomic regions from SNP 226356 to 226956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,451 DEBUG Processing 729/904 atomic regions from SNP 218652 to 219252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,476 DEBUG Processing 607/1139 atomic regions from SNP 182033 to 182633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,491 DEBUG Processing 205/234 atomic regions from SNP 61430 to 62031 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:49,506 DEBUG Processing 533/653 atomic regions from SNP 159627 to 160227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,541 DEBUG Processing 644/1029 atomic regions from SNP 193101 to 193701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,598 DEBUG Processing 756/862 atomic regions from SNP 226656 to 227256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,739 DEBUG Processing 206/234 atomic regions from SNP 61731 to 62332 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:49,739 DEBUG Processing 730/904 atomic regions from SNP 218952 to 219552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,761 DEBUG Processing 608/1139 atomic regions from SNP 182333 to 182933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,782 DEBUG Processing 534/653 atomic regions from SNP 159927 to 160527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,818 DEBUG Processing 645/1029 atomic regions from SNP 193401 to 194001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,873 DEBUG Processing 757/862 atomic regions from SNP 226956 to 227556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,980 DEBUG Processing 207/234 atomic regions from SNP 62032 to 62633 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:50,029 DEBUG Processing 731/904 atomic regions from SNP 219252 to 219852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,058 DEBUG Processing 609/1139 atomic regions from SNP 182633 to 183233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,059 DEBUG Processing 535/653 atomic regions from SNP 160227 to 160827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,118 DEBUG Processing 646/1029 atomic regions from SNP 193701 to 194301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,142 DEBUG Processing 758/862 atomic regions from SNP 227256 to 227856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,213 DEBUG Processing 208/234 atomic regions from SNP 62333 to 62934 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:50,303 DEBUG Processing 732/904 atomic regions from SNP 219552 to 220152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,338 DEBUG Processing 536/653 atomic regions from SNP 160527 to 161127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,359 DEBUG Processing 610/1139 atomic regions from SNP 182933 to 183533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,402 DEBUG Processing 759/862 atomic regions from SNP 227556 to 228156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,410 DEBUG Processing 647/1029 atomic regions from SNP 194001 to 194601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,449 DEBUG Processing 209/234 atomic regions from SNP 62634 to 63235 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:50,562 DEBUG Processing 733/904 atomic regions from SNP 219852 to 220452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,612 DEBUG Processing 537/653 atomic regions from SNP 160827 to 161427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,644 DEBUG Processing 611/1139 atomic regions from SNP 183233 to 183833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,667 DEBUG Processing 760/862 atomic regions from SNP 227856 to 228456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,686 DEBUG Processing 210/234 atomic regions from SNP 62935 to 63536 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:50,695 DEBUG Processing 648/1029 atomic regions from SNP 194301 to 194901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,812 DEBUG Processing 734/904 atomic regions from SNP 220152 to 220752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,880 DEBUG Processing 538/653 atomic regions from SNP 161127 to 161727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,918 DEBUG Processing 211/234 atomic regions from SNP 63236 to 63837 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:50,924 DEBUG Processing 612/1139 atomic regions from SNP 183533 to 184133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,926 DEBUG Processing 761/862 atomic regions from SNP 228156 to 228756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,962 DEBUG Processing 649/1029 atomic regions from SNP 194601 to 195201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,059 DEBUG Processing 735/904 atomic regions from SNP 220452 to 221052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,152 DEBUG Processing 212/234 atomic regions from SNP 63537 to 64138 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:51,160 DEBUG Processing 539/653 atomic regions from SNP 161427 to 162027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,199 DEBUG Processing 613/1139 atomic regions from SNP 183833 to 184433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,200 DEBUG Processing 762/862 atomic regions from SNP 228456 to 229056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,226 DEBUG Processing 650/1029 atomic regions from SNP 194901 to 195501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,317 DEBUG Processing 736/904 atomic regions from SNP 220752 to 221352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,389 DEBUG Processing 213/234 atomic regions from SNP 63838 to 64439 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:51,428 DEBUG Processing 540/653 atomic regions from SNP 161727 to 162327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,475 DEBUG Processing 614/1139 atomic regions from SNP 184133 to 184733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,477 DEBUG Processing 763/862 atomic regions from SNP 228756 to 229356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,493 DEBUG Processing 651/1029 atomic regions from SNP 195201 to 195801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,586 DEBUG Processing 737/904 atomic regions from SNP 221052 to 221652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,625 DEBUG Processing 214/234 atomic regions from SNP 64139 to 64740 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:51,705 DEBUG Processing 541/653 atomic regions from SNP 162027 to 162627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,738 DEBUG Processing 764/862 atomic regions from SNP 229056 to 229656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,752 DEBUG Processing 615/1139 atomic regions from SNP 184433 to 185033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,760 DEBUG Processing 652/1029 atomic regions from SNP 195501 to 196101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,830 DEBUG Processing 738/904 atomic regions from SNP 221352 to 221952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,857 DEBUG Processing 215/234 atomic regions from SNP 64440 to 65041 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:51,962 DEBUG Processing 542/653 atomic regions from SNP 162327 to 162927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,992 DEBUG Processing 765/862 atomic regions from SNP 229356 to 229956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,030 DEBUG Processing 616/1139 atomic regions from SNP 184733 to 185333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,032 DEBUG Processing 653/1029 atomic regions from SNP 195801 to 196401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,085 DEBUG Processing 739/904 atomic regions from SNP 221652 to 222252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,098 DEBUG Processing 216/234 atomic regions from SNP 64741 to 65342 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:52,220 DEBUG Processing 543/653 atomic regions from SNP 162627 to 163227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,255 DEBUG Processing 766/862 atomic regions from SNP 229656 to 230256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,318 DEBUG Processing 654/1029 atomic regions from SNP 196101 to 196701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,319 DEBUG Processing 617/1139 atomic regions from SNP 185033 to 185633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,344 DEBUG Processing 217/234 atomic regions from SNP 65042 to 65643 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:52,346 DEBUG Processing 740/904 atomic regions from SNP 221952 to 222552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,476 DEBUG Processing 544/653 atomic regions from SNP 162927 to 163527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,519 DEBUG Processing 767/862 atomic regions from SNP 229956 to 230556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,586 DEBUG Processing 218/234 atomic regions from SNP 65343 to 65944 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:52,595 DEBUG Processing 655/1029 atomic regions from SNP 196401 to 197001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,602 DEBUG Processing 618/1139 atomic regions from SNP 185333 to 185933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,618 DEBUG Processing 741/904 atomic regions from SNP 222252 to 222852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,742 DEBUG Processing 545/653 atomic regions from SNP 163227 to 163827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,801 DEBUG Processing 768/862 atomic regions from SNP 230256 to 230856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,832 DEBUG Processing 219/234 atomic regions from SNP 65644 to 66245 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:52,877 DEBUG Processing 656/1029 atomic regions from SNP 196701 to 197301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,888 DEBUG Processing 619/1139 atomic regions from SNP 185633 to 186233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,898 DEBUG Processing 742/904 atomic regions from SNP 222552 to 223152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,011 DEBUG Processing 546/653 atomic regions from SNP 163527 to 164127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,074 DEBUG Processing 220/234 atomic regions from SNP 65945 to 66546 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,082 DEBUG Processing 769/862 atomic regions from SNP 230556 to 231156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,149 DEBUG Processing 743/904 atomic regions from SNP 222852 to 223452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,149 DEBUG Processing 657/1029 atomic regions from SNP 197001 to 197601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,166 DEBUG Processing 620/1139 atomic regions from SNP 185933 to 186533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,272 DEBUG Processing 547/653 atomic regions from SNP 163827 to 164427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,317 DEBUG Processing 221/234 atomic regions from SNP 66246 to 66847 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,350 DEBUG Processing 770/862 atomic regions from SNP 230856 to 231456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,405 DEBUG Processing 744/904 atomic regions from SNP 223152 to 223752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,423 DEBUG Processing 658/1029 atomic regions from SNP 197301 to 197901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,445 DEBUG Processing 621/1139 atomic regions from SNP 186233 to 186833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,534 DEBUG Processing 548/653 atomic regions from SNP 164127 to 164727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,556 DEBUG Processing 222/234 atomic regions from SNP 66547 to 67148 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,599 DEBUG Processing 771/862 atomic regions from SNP 231156 to 231756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,657 DEBUG Processing 745/904 atomic regions from SNP 223452 to 224052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,698 DEBUG Processing 659/1029 atomic regions from SNP 197601 to 198201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,727 DEBUG Processing 622/1139 atomic regions from SNP 186533 to 187133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,794 DEBUG Processing 223/234 atomic regions from SNP 66848 to 67449 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,802 DEBUG Processing 549/653 atomic regions from SNP 164427 to 165027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,844 DEBUG Processing 772/862 atomic regions from SNP 231456 to 232056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,912 DEBUG Processing 746/904 atomic regions from SNP 223752 to 224352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,973 DEBUG Processing 660/1029 atomic regions from SNP 197901 to 198501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,007 DEBUG Processing 623/1139 atomic regions from SNP 186833 to 187433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,030 DEBUG Processing 224/234 atomic regions from SNP 67149 to 67750 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,070 DEBUG Processing 550/653 atomic regions from SNP 164727 to 165327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,085 DEBUG Processing 773/862 atomic regions from SNP 231756 to 232356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,164 DEBUG Processing 747/904 atomic regions from SNP 224052 to 224652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,251 DEBUG Processing 661/1029 atomic regions from SNP 198201 to 198801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,272 DEBUG Processing 225/234 atomic regions from SNP 67450 to 68051 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,293 DEBUG Processing 624/1139 atomic regions from SNP 187133 to 187733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,340 DEBUG Processing 551/653 atomic regions from SNP 165027 to 165627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,350 DEBUG Processing 774/862 atomic regions from SNP 232056 to 232656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,415 DEBUG Processing 748/904 atomic regions from SNP 224352 to 224952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,518 DEBUG Processing 226/234 atomic regions from SNP 67751 to 68352 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,528 DEBUG Processing 662/1029 atomic regions from SNP 198501 to 199101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,579 DEBUG Processing 625/1139 atomic regions from SNP 187433 to 188033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,611 DEBUG Processing 552/653 atomic regions from SNP 165327 to 165927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,620 DEBUG Processing 775/862 atomic regions from SNP 232356 to 232956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,664 DEBUG Processing 749/904 atomic regions from SNP 224652 to 225252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,760 DEBUG Processing 227/234 atomic regions from SNP 68052 to 68653 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,802 DEBUG Processing 663/1029 atomic regions from SNP 198801 to 199401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,860 DEBUG Processing 626/1139 atomic regions from SNP 187733 to 188333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,872 DEBUG Processing 553/653 atomic regions from SNP 165627 to 166227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,899 DEBUG Processing 776/862 atomic regions from SNP 232656 to 233256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,913 DEBUG Processing 750/904 atomic regions from SNP 224952 to 225552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,997 DEBUG Processing 228/234 atomic regions from SNP 68353 to 68954 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,075 DEBUG Processing 664/1029 atomic regions from SNP 199101 to 199701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,143 DEBUG Processing 627/1139 atomic regions from SNP 188033 to 188633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,145 DEBUG Processing 554/653 atomic regions from SNP 165927 to 166527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,166 DEBUG Processing 751/904 atomic regions from SNP 225252 to 225852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,175 DEBUG Processing 777/862 atomic regions from SNP 232956 to 233556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,231 DEBUG Processing 229/234 atomic regions from SNP 68654 to 69255 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,344 DEBUG Processing 665/1029 atomic regions from SNP 199401 to 200001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,405 DEBUG Processing 555/653 atomic regions from SNP 166227 to 166827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,421 DEBUG Processing 752/904 atomic regions from SNP 225552 to 226152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,425 DEBUG Processing 628/1139 atomic regions from SNP 188333 to 188933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,458 DEBUG Processing 778/862 atomic regions from SNP 233256 to 233856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,465 DEBUG Processing 230/234 atomic regions from SNP 68955 to 69556 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,612 DEBUG Processing 666/1029 atomic regions from SNP 199701 to 200301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,654 DEBUG Processing 556/653 atomic regions from SNP 166527 to 167127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,679 DEBUG Processing 753/904 atomic regions from SNP 225852 to 226452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,707 DEBUG Processing 231/234 atomic regions from SNP 69256 to 69857 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,709 DEBUG Processing 629/1139 atomic regions from SNP 188633 to 189233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,742 DEBUG Processing 779/862 atomic regions from SNP 233556 to 234156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,879 DEBUG Processing 667/1029 atomic regions from SNP 200001 to 200601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,904 DEBUG Processing 557/653 atomic regions from SNP 166827 to 167427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,932 DEBUG Processing 754/904 atomic regions from SNP 226152 to 226752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,950 DEBUG Processing 232/234 atomic regions from SNP 69557 to 70158 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,997 DEBUG Processing 630/1139 atomic regions from SNP 188933 to 189533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,011 DEBUG Processing 780/862 atomic regions from SNP 233856 to 234456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,143 DEBUG Processing 668/1029 atomic regions from SNP 200301 to 200901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,158 DEBUG Processing 558/653 atomic regions from SNP 167127 to 167727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,186 DEBUG Processing 755/904 atomic regions from SNP 226452 to 227052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,191 DEBUG Processing 233/234 atomic regions from SNP 69858 to 70459 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:56,282 DEBUG Processing 631/1139 atomic regions from SNP 189233 to 189833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,291 DEBUG Processing 781/862 atomic regions from SNP 234156 to 234756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,418 DEBUG Processing 669/1029 atomic regions from SNP 200601 to 201201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,425 DEBUG Processing 559/653 atomic regions from SNP 167427 to 168027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,435 DEBUG Processing 234/234 atomic regions from SNP 70159 to 70760 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:56,443 DEBUG Processing 756/904 atomic regions from SNP 226752 to 227352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,569 DEBUG Processing 632/1139 atomic regions from SNP 189533 to 190133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,573 DEBUG Unique SNPs positions in subchromosome 6: 70761 2025-01-31 09:46:56,573 DEBUG Processing 782/862 atomic regions from SNP 234456 to 235056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,700 DEBUG Subchromosome time: 65.85117130703293, subchromosome SNPs: 70761 2025-01-31 09:46:56,701 DEBUG Estimated BADs: [1.52, 9.11, 3.04, 1.52, 0.00, 0.00, 3.04, 1.52, 15.19, 1.52, 6.08, 3.04, 0.76, 3.04, 1.52, 3.04, 1.52, 0.38, 0.00, 0.51, 1.52, 0.76, 1.52, 15.19] SNP counts: [3936, 681, 12593, 15811, 2, 59, 6114, 18909, 142, 35431, 2110, 4780, 23187, 7154, 5713, 11715, 11930, 15825, 3, 12766, 14758, 9550, 33646, 41] SNP IDs counts: [3936, 681, 12593, 15811, 2, 59, 6114, 18909, 142, 35431, 2110, 4780, 23187, 7154, 5713, 11715, 11930, 15825, 3, 12766, 14758, 9550, 33646, 41] Critical gap: 751279bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.56Mbp, 7.91Mbp, 15.27Mbp, 26.92Mbp[1.11Mbp], 28.03Mbp[0.98Mbp], 29.68Mbp[1.45Mbp], 39.28Mbp, 50.56Mbp, 50.64Mbp, 72.95Mbp, 74.24Mbp, 77.43Mbp, 91.31Mbp, 95.93Mbp, 99.32Mbp, 106.01Mbp, 113.38Mbp, 124.24Mbp[0.88Mbp], 125.12Mbp[0.88Mbp], 133.85Mbp, 142.60Mbp, 150.43Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:46:56,701 DEBUG chrX time: 65.85173069103621 s 2025-01-31 09:46:56,703 DEBUG Processing 670/1029 atomic regions from SNP 200901 to 201501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,710 DEBUG Processing 560/653 atomic regions from SNP 167727 to 168327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,713 DEBUG Processing 757/904 atomic regions from SNP 227052 to 227652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,823 DEBUG Processing 783/862 atomic regions from SNP 234756 to 235356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,856 DEBUG Processing 633/1139 atomic regions from SNP 189833 to 190433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,857 DEBUG chrX: Fitting background model for 21 segments 2025-01-31 09:46:56,969 DEBUG Processing 758/904 atomic regions from SNP 227352 to 227952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,979 DEBUG Processing 671/1029 atomic regions from SNP 201201 to 201801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,982 DEBUG Processing 561/653 atomic regions from SNP 168027 to 168627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,074 DEBUG Processing 784/862 atomic regions from SNP 235056 to 235656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,138 DEBUG Processing 634/1139 atomic regions from SNP 190133 to 190733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,225 DEBUG Processing 759/904 atomic regions from SNP 227652 to 228252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,256 DEBUG Processing 562/653 atomic regions from SNP 168327 to 168927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,262 DEBUG Processing 672/1029 atomic regions from SNP 201501 to 202101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,330 DEBUG Processing 785/862 atomic regions from SNP 235356 to 235956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,417 DEBUG Processing 635/1139 atomic regions from SNP 190433 to 191033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,481 DEBUG Processing 760/904 atomic regions from SNP 227952 to 228552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,523 DEBUG Processing 563/653 atomic regions from SNP 168627 to 169227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,542 DEBUG Processing 673/1029 atomic regions from SNP 201801 to 202401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,581 DEBUG Processing 786/862 atomic regions from SNP 235656 to 236256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,695 DEBUG Processing 636/1139 atomic regions from SNP 190733 to 191333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,730 DEBUG Processing 761/904 atomic regions from SNP 228252 to 228852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,793 DEBUG Processing 564/653 atomic regions from SNP 168927 to 169527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,816 DEBUG Processing 674/1029 atomic regions from SNP 202101 to 202701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,843 DEBUG Processing 787/862 atomic regions from SNP 235956 to 236556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,972 DEBUG Processing 637/1139 atomic regions from SNP 191033 to 191633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,984 DEBUG Processing 762/904 atomic regions from SNP 228552 to 229152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,042 DEBUG Processing 565/653 atomic regions from SNP 169227 to 169827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,093 DEBUG Processing 675/1029 atomic regions from SNP 202401 to 203001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,120 DEBUG Processing 788/862 atomic regions from SNP 236256 to 236856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,250 DEBUG Processing 638/1139 atomic regions from SNP 191333 to 191933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,250 DEBUG Processing 763/904 atomic regions from SNP 228852 to 229452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,287 DEBUG Processing 566/653 atomic regions from SNP 169527 to 170127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,370 DEBUG Processing 676/1029 atomic regions from SNP 202701 to 203301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,401 DEBUG Processing 789/862 atomic regions from SNP 236556 to 237156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,533 DEBUG Processing 639/1139 atomic regions from SNP 191633 to 192233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,535 DEBUG Processing 567/653 atomic regions from SNP 169827 to 170427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,536 DEBUG Processing 764/904 atomic regions from SNP 229152 to 229752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,645 DEBUG Processing 677/1029 atomic regions from SNP 203001 to 203601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,665 DEBUG Processing 790/862 atomic regions from SNP 236856 to 237456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,786 DEBUG Processing 568/653 atomic regions from SNP 170127 to 170727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,813 DEBUG Processing 640/1139 atomic regions from SNP 191933 to 192533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,817 DEBUG Processing 765/904 atomic regions from SNP 229452 to 230052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,926 DEBUG Processing 678/1029 atomic regions from SNP 203301 to 203901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,953 DEBUG Processing 791/862 atomic regions from SNP 237156 to 237756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,059 DEBUG Processing 569/653 atomic regions from SNP 170427 to 171027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,093 DEBUG Processing 766/904 atomic regions from SNP 229752 to 230352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,100 DEBUG Processing 641/1139 atomic regions from SNP 192233 to 192833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,214 DEBUG Processing 679/1029 atomic regions from SNP 203601 to 204201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,227 DEBUG Processing 792/862 atomic regions from SNP 237456 to 238056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,335 DEBUG Processing 570/653 atomic regions from SNP 170727 to 171327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,381 DEBUG Processing 767/904 atomic regions from SNP 230052 to 230652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,388 DEBUG Processing 642/1139 atomic regions from SNP 192533 to 193133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,492 DEBUG Processing 680/1029 atomic regions from SNP 203901 to 204501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,494 DEBUG Processing 793/862 atomic regions from SNP 237756 to 238356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,625 DEBUG Processing 571/653 atomic regions from SNP 171027 to 171627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,651 DEBUG Processing 768/904 atomic regions from SNP 230352 to 230952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,688 DEBUG Processing 643/1139 atomic regions from SNP 192833 to 193433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,761 DEBUG Processing 794/862 atomic regions from SNP 238056 to 238656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,777 DEBUG Processing 681/1029 atomic regions from SNP 204201 to 204801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,909 DEBUG Processing 572/653 atomic regions from SNP 171327 to 171927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,916 DEBUG Processing 769/904 atomic regions from SNP 230652 to 231252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,980 DEBUG Processing 644/1139 atomic regions from SNP 193133 to 193733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,040 DEBUG Processing 795/862 atomic regions from SNP 238356 to 238956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,052 DEBUG Processing 682/1029 atomic regions from SNP 204501 to 205101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,176 DEBUG Processing 770/904 atomic regions from SNP 230952 to 231552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,177 DEBUG Processing 573/653 atomic regions from SNP 171627 to 172227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,266 DEBUG Processing 645/1139 atomic regions from SNP 193433 to 194033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,319 DEBUG Processing 796/862 atomic regions from SNP 238656 to 239256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,323 DEBUG Processing 683/1029 atomic regions from SNP 204801 to 205401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,437 DEBUG Processing 771/904 atomic regions from SNP 231252 to 231852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,453 DEBUG Processing 574/653 atomic regions from SNP 171927 to 172527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,551 DEBUG Processing 646/1139 atomic regions from SNP 193733 to 194333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,605 DEBUG Processing 797/862 atomic regions from SNP 238956 to 239556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,607 DEBUG Processing 684/1029 atomic regions from SNP 205101 to 205701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,712 DEBUG Processing 772/904 atomic regions from SNP 231552 to 232152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,734 DEBUG Processing 575/653 atomic regions from SNP 172227 to 172827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,834 DEBUG Processing 647/1139 atomic regions from SNP 194033 to 194633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,867 DEBUG Processing 798/862 atomic regions from SNP 239256 to 239856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,924 DEBUG Processing 685/1029 atomic regions from SNP 205401 to 206001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,978 DEBUG Processing 773/904 atomic regions from SNP 231852 to 232452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,017 DEBUG Processing 576/653 atomic regions from SNP 172527 to 173127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,116 DEBUG Processing 648/1139 atomic regions from SNP 194333 to 194933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,117 DEBUG Processing 799/862 atomic regions from SNP 239556 to 240156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,240 DEBUG Processing 774/904 atomic regions from SNP 232152 to 232752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,250 DEBUG Processing 686/1029 atomic regions from SNP 205701 to 206301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,287 DEBUG Processing 577/653 atomic regions from SNP 172827 to 173427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,358 DEBUG Processing 800/862 atomic regions from SNP 239856 to 240456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,390 DEBUG Processing 649/1139 atomic regions from SNP 194633 to 195233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,503 DEBUG Processing 775/904 atomic regions from SNP 232452 to 233052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,542 DEBUG Processing 578/653 atomic regions from SNP 173127 to 173727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,568 DEBUG Processing 687/1029 atomic regions from SNP 206001 to 206601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,615 DEBUG Processing 801/862 atomic regions from SNP 240156 to 240756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,665 DEBUG Processing 650/1139 atomic regions from SNP 194933 to 195533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,761 DEBUG Processing 776/904 atomic regions from SNP 232752 to 233352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,795 DEBUG Processing 579/653 atomic regions from SNP 173427 to 174027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,869 DEBUG Processing 802/862 atomic regions from SNP 240456 to 241056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,886 DEBUG Processing 688/1029 atomic regions from SNP 206301 to 206901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,943 DEBUG Processing 651/1139 atomic regions from SNP 195233 to 195833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,017 DEBUG Processing 777/904 atomic regions from SNP 233052 to 233652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,050 DEBUG Processing 580/653 atomic regions from SNP 173727 to 174327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,125 DEBUG Processing 803/862 atomic regions from SNP 240756 to 241356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,197 DEBUG Processing 689/1029 atomic regions from SNP 206601 to 207201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,226 DEBUG Processing 652/1139 atomic regions from SNP 195533 to 196133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,275 DEBUG Processing 778/904 atomic regions from SNP 233352 to 233952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,298 DEBUG Processing 581/653 atomic regions from SNP 174027 to 174627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,379 DEBUG Processing 804/862 atomic regions from SNP 241056 to 241656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,500 DEBUG Processing 690/1029 atomic regions from SNP 206901 to 207501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,514 DEBUG Processing 653/1139 atomic regions from SNP 195833 to 196433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,540 DEBUG Processing 779/904 atomic regions from SNP 233652 to 234252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,554 DEBUG Processing 582/653 atomic regions from SNP 174327 to 174927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,628 DEBUG Processing 805/862 atomic regions from SNP 241356 to 241956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,803 DEBUG Processing 654/1139 atomic regions from SNP 196133 to 196733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,805 DEBUG Processing 691/1029 atomic regions from SNP 207201 to 207801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,805 DEBUG Processing 780/904 atomic regions from SNP 233952 to 234552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,810 DEBUG Processing 583/653 atomic regions from SNP 174627 to 175227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,876 DEBUG Processing 806/862 atomic regions from SNP 241656 to 242256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,067 DEBUG Processing 584/653 atomic regions from SNP 174927 to 175527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,069 DEBUG Processing 781/904 atomic regions from SNP 234252 to 234852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,097 DEBUG Processing 655/1139 atomic regions from SNP 196433 to 197033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,112 DEBUG Processing 692/1029 atomic regions from SNP 207501 to 208101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,136 DEBUG Processing 807/862 atomic regions from SNP 241956 to 242556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,330 DEBUG Processing 585/653 atomic regions from SNP 175227 to 175827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,340 DEBUG Processing 782/904 atomic regions from SNP 234552 to 235152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,392 DEBUG Processing 656/1139 atomic regions from SNP 196733 to 197333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,410 DEBUG Processing 693/1029 atomic regions from SNP 207801 to 208401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,415 DEBUG Processing 808/862 atomic regions from SNP 242256 to 242856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,585 DEBUG Processing 586/653 atomic regions from SNP 175527 to 176127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,609 DEBUG Processing 783/904 atomic regions from SNP 234852 to 235452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,684 DEBUG Processing 657/1139 atomic regions from SNP 197033 to 197633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,694 DEBUG Processing 809/862 atomic regions from SNP 242556 to 243156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,718 DEBUG Processing 694/1029 atomic regions from SNP 208101 to 208701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,836 DEBUG Processing 587/653 atomic regions from SNP 175827 to 176427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,875 DEBUG Processing 784/904 atomic regions from SNP 235152 to 235752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,973 DEBUG Processing 658/1139 atomic regions from SNP 197333 to 197933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,978 DEBUG Processing 810/862 atomic regions from SNP 242856 to 243456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,007 DEBUG Processing 695/1029 atomic regions from SNP 208401 to 209001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,086 DEBUG Processing 588/653 atomic regions from SNP 176127 to 176727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,139 DEBUG Processing 785/904 atomic regions from SNP 235452 to 236052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,263 DEBUG Processing 659/1139 atomic regions from SNP 197633 to 198233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,267 DEBUG Processing 811/862 atomic regions from SNP 243156 to 243756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,292 DEBUG Processing 696/1029 atomic regions from SNP 208701 to 209301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,334 DEBUG Processing 589/653 atomic regions from SNP 176427 to 177027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,392 DEBUG Processing 786/904 atomic regions from SNP 235752 to 236352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,532 DEBUG Processing 812/862 atomic regions from SNP 243456 to 244056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,550 DEBUG Processing 660/1139 atomic regions from SNP 197933 to 198533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,583 DEBUG Processing 590/653 atomic regions from SNP 176727 to 177327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,594 DEBUG Processing 697/1029 atomic regions from SNP 209001 to 209601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,648 DEBUG Processing 787/904 atomic regions from SNP 236052 to 236652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,813 DEBUG Processing 813/862 atomic regions from SNP 243756 to 244356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,839 DEBUG Processing 591/653 atomic regions from SNP 177027 to 177627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,844 DEBUG Processing 661/1139 atomic regions from SNP 198233 to 198833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,896 DEBUG Processing 698/1029 atomic regions from SNP 209301 to 209901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,903 DEBUG Processing 788/904 atomic regions from SNP 236352 to 236952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,092 DEBUG Processing 592/653 atomic regions from SNP 177327 to 177927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,097 DEBUG Processing 814/862 atomic regions from SNP 244056 to 244656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,133 DEBUG Processing 662/1139 atomic regions from SNP 198533 to 199133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,157 DEBUG Processing 789/904 atomic regions from SNP 236652 to 237252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,174 DEBUG Processing 699/1029 atomic regions from SNP 209601 to 210201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,337 DEBUG Processing 593/653 atomic regions from SNP 177627 to 178227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,375 DEBUG Processing 815/862 atomic regions from SNP 244356 to 244956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,416 DEBUG Processing 790/904 atomic regions from SNP 236952 to 237552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,417 DEBUG Processing 663/1139 atomic regions from SNP 198833 to 199433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,463 DEBUG Processing 700/1029 atomic regions from SNP 209901 to 210501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,595 DEBUG Processing 594/653 atomic regions from SNP 177927 to 178527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,648 DEBUG Processing 816/862 atomic regions from SNP 244656 to 245256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,671 DEBUG Processing 791/904 atomic regions from SNP 237252 to 237852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,704 DEBUG Processing 664/1139 atomic regions from SNP 199133 to 199733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,756 DEBUG Processing 701/1029 atomic regions from SNP 210201 to 210801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,854 DEBUG Processing 595/653 atomic regions from SNP 178227 to 178827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,912 DEBUG Processing 817/862 atomic regions from SNP 244956 to 245556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,918 DEBUG Processing 792/904 atomic regions from SNP 237552 to 238152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,985 DEBUG Processing 665/1139 atomic regions from SNP 199433 to 200033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,053 DEBUG Processing 702/1029 atomic regions from SNP 210501 to 211101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,111 DEBUG Processing 596/653 atomic regions from SNP 178527 to 179127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,172 DEBUG Processing 793/904 atomic regions from SNP 237852 to 238452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,174 DEBUG Processing 818/862 atomic regions from SNP 245256 to 245856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,271 DEBUG Processing 666/1139 atomic regions from SNP 199733 to 200333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,354 DEBUG Processing 597/653 atomic regions from SNP 178827 to 179427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,356 DEBUG Processing 703/1029 atomic regions from SNP 210801 to 211401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,423 DEBUG Processing 794/904 atomic regions from SNP 238152 to 238752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,442 DEBUG Processing 819/862 atomic regions from SNP 245556 to 246156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,553 DEBUG Processing 667/1139 atomic regions from SNP 200033 to 200633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,602 DEBUG Processing 598/653 atomic regions from SNP 179127 to 179727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,634 DEBUG Processing 704/1029 atomic regions from SNP 211101 to 211701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,676 DEBUG Processing 795/904 atomic regions from SNP 238452 to 239052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,694 DEBUG Processing 820/862 atomic regions from SNP 245856 to 246456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,833 DEBUG Processing 668/1139 atomic regions from SNP 200333 to 200933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,849 DEBUG Processing 599/653 atomic regions from SNP 179427 to 180027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,910 DEBUG Processing 705/1029 atomic regions from SNP 211401 to 212001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,934 DEBUG Processing 796/904 atomic regions from SNP 238752 to 239352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,942 DEBUG Processing 821/862 atomic regions from SNP 246156 to 246756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,096 DEBUG Processing 600/653 atomic regions from SNP 179727 to 180327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,113 DEBUG Processing 669/1139 atomic regions from SNP 200633 to 201233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,188 DEBUG Processing 706/1029 atomic regions from SNP 211701 to 212301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,192 DEBUG Processing 797/904 atomic regions from SNP 239052 to 239652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,195 DEBUG Processing 822/862 atomic regions from SNP 246456 to 247056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,358 DEBUG Processing 601/653 atomic regions from SNP 180027 to 180627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,398 DEBUG Processing 670/1139 atomic regions from SNP 200933 to 201533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,458 DEBUG Processing 798/904 atomic regions from SNP 239352 to 239952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,478 DEBUG Processing 823/862 atomic regions from SNP 246756 to 247356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,496 DEBUG Processing 707/1029 atomic regions from SNP 212001 to 212601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,639 DEBUG Processing 602/653 atomic regions from SNP 180327 to 180927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,689 DEBUG Processing 671/1139 atomic regions from SNP 201233 to 201833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,724 DEBUG Processing 799/904 atomic regions from SNP 239652 to 240252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,760 DEBUG Processing 824/862 atomic regions from SNP 247056 to 247656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,805 DEBUG Processing 708/1029 atomic regions from SNP 212301 to 212901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,918 DEBUG Processing 603/653 atomic regions from SNP 180627 to 181227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,971 DEBUG Processing 672/1139 atomic regions from SNP 201533 to 202133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,980 DEBUG Processing 800/904 atomic regions from SNP 239952 to 240552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,048 DEBUG Processing 825/862 atomic regions from SNP 247356 to 247956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,103 DEBUG Processing 709/1029 atomic regions from SNP 212601 to 213201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,173 DEBUG Processing 604/653 atomic regions from SNP 180927 to 181527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,236 DEBUG Processing 801/904 atomic regions from SNP 240252 to 240852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,253 DEBUG Processing 673/1139 atomic regions from SNP 201833 to 202433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,300 DEBUG Processing 826/862 atomic regions from SNP 247656 to 248256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,383 DEBUG Processing 710/1029 atomic regions from SNP 212901 to 213501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,440 DEBUG Processing 605/653 atomic regions from SNP 181227 to 181827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,495 DEBUG Processing 802/904 atomic regions from SNP 240552 to 241152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,554 DEBUG Processing 827/862 atomic regions from SNP 247956 to 248556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,561 DEBUG Processing 674/1139 atomic regions from SNP 202133 to 202733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,669 DEBUG Processing 711/1029 atomic regions from SNP 213201 to 213801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,709 DEBUG Processing 606/653 atomic regions from SNP 181527 to 182127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,751 DEBUG Processing 803/904 atomic regions from SNP 240852 to 241452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,804 DEBUG Processing 828/862 atomic regions from SNP 248256 to 248856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,886 DEBUG Processing 675/1139 atomic regions from SNP 202433 to 203033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,942 DEBUG Processing 712/1029 atomic regions from SNP 213501 to 214101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,978 DEBUG Processing 607/653 atomic regions from SNP 181827 to 182427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,009 DEBUG Processing 804/904 atomic regions from SNP 241152 to 241752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,058 DEBUG Processing 829/862 atomic regions from SNP 248556 to 249156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,195 DEBUG Processing 676/1139 atomic regions from SNP 202733 to 203333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,218 DEBUG Processing 713/1029 atomic regions from SNP 213801 to 214401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,254 DEBUG Processing 608/653 atomic regions from SNP 182127 to 182727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,271 DEBUG Processing 805/904 atomic regions from SNP 241452 to 242052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,340 DEBUG Processing 830/862 atomic regions from SNP 248856 to 249456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,486 DEBUG Processing 677/1139 atomic regions from SNP 203033 to 203633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,494 DEBUG Processing 714/1029 atomic regions from SNP 214101 to 214701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,521 DEBUG Processing 609/653 atomic regions from SNP 182427 to 183027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,526 DEBUG Processing 806/904 atomic regions from SNP 241752 to 242352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,595 DEBUG Processing 831/862 atomic regions from SNP 249156 to 249756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,772 DEBUG Processing 715/1029 atomic regions from SNP 214401 to 215001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,776 DEBUG Processing 678/1139 atomic regions from SNP 203333 to 203933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,786 DEBUG Processing 610/653 atomic regions from SNP 182727 to 183327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,786 DEBUG Processing 807/904 atomic regions from SNP 242052 to 242652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,856 DEBUG Processing 832/862 atomic regions from SNP 249456 to 250056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,045 DEBUG Processing 808/904 atomic regions from SNP 242352 to 242952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,053 DEBUG Processing 611/653 atomic regions from SNP 183027 to 183627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,055 DEBUG Processing 716/1029 atomic regions from SNP 214701 to 215301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,076 DEBUG Processing 679/1139 atomic regions from SNP 203633 to 204233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,131 DEBUG Processing 833/862 atomic regions from SNP 249756 to 250356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,303 DEBUG Processing 809/904 atomic regions from SNP 242652 to 243252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,323 DEBUG Processing 612/653 atomic regions from SNP 183327 to 183927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,339 DEBUG Processing 717/1029 atomic regions from SNP 215001 to 215601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,374 DEBUG Processing 680/1139 atomic regions from SNP 203933 to 204533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,404 DEBUG Processing 834/862 atomic regions from SNP 250056 to 250656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,561 DEBUG Processing 810/904 atomic regions from SNP 242952 to 243552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,600 DEBUG Processing 613/653 atomic regions from SNP 183627 to 184227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,623 DEBUG Processing 718/1029 atomic regions from SNP 215301 to 215901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,666 DEBUG Processing 835/862 atomic regions from SNP 250356 to 250956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,681 DEBUG Processing 681/1139 atomic regions from SNP 204233 to 204833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,822 DEBUG Processing 811/904 atomic regions from SNP 243252 to 243852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,876 DEBUG Processing 614/653 atomic regions from SNP 183927 to 184527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,918 DEBUG Processing 719/1029 atomic regions from SNP 215601 to 216201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,935 DEBUG Processing 836/862 atomic regions from SNP 250656 to 251256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,011 DEBUG Processing 682/1139 atomic regions from SNP 204533 to 205133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,075 DEBUG Processing 812/904 atomic regions from SNP 243552 to 244152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,145 DEBUG Processing 615/653 atomic regions from SNP 184227 to 184827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,198 DEBUG Processing 720/1029 atomic regions from SNP 215901 to 216501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,198 DEBUG Processing 837/862 atomic regions from SNP 250956 to 251556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,310 DEBUG Processing 683/1139 atomic regions from SNP 204833 to 205433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,329 DEBUG Processing 813/904 atomic regions from SNP 243852 to 244452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,428 DEBUG Processing 616/653 atomic regions from SNP 184527 to 185127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,462 DEBUG Processing 838/862 atomic regions from SNP 251256 to 251856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,481 DEBUG Processing 721/1029 atomic regions from SNP 216201 to 216801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,579 DEBUG Processing 814/904 atomic regions from SNP 244152 to 244752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,597 DEBUG Processing 684/1139 atomic regions from SNP 205133 to 205733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,702 DEBUG Processing 617/653 atomic regions from SNP 184827 to 185427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,715 DEBUG Processing 839/862 atomic regions from SNP 251556 to 252156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,763 DEBUG Processing 722/1029 atomic regions from SNP 216501 to 217101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,838 DEBUG Processing 815/904 atomic regions from SNP 244452 to 245052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,904 DEBUG Processing 685/1139 atomic regions from SNP 205433 to 206033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,973 DEBUG Processing 618/653 atomic regions from SNP 185127 to 185727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,978 DEBUG Processing 840/862 atomic regions from SNP 251856 to 252456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,046 DEBUG Processing 723/1029 atomic regions from SNP 216801 to 217401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,092 DEBUG Processing 816/904 atomic regions from SNP 244752 to 245352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,214 DEBUG Processing 686/1139 atomic regions from SNP 205733 to 206333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,232 DEBUG Processing 841/862 atomic regions from SNP 252156 to 252756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,245 DEBUG Processing 619/653 atomic regions from SNP 185427 to 186027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,333 DEBUG Processing 724/1029 atomic regions from SNP 217101 to 217701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,353 DEBUG Processing 817/904 atomic regions from SNP 245052 to 245652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,487 DEBUG Processing 842/862 atomic regions from SNP 252456 to 253056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,508 DEBUG Processing 620/653 atomic regions from SNP 185727 to 186327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,528 DEBUG Processing 687/1139 atomic regions from SNP 206033 to 206633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,610 DEBUG Processing 818/904 atomic regions from SNP 245352 to 245952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,618 DEBUG Processing 725/1029 atomic regions from SNP 217401 to 218001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,751 DEBUG Processing 843/862 atomic regions from SNP 252756 to 253356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,785 DEBUG Processing 621/653 atomic regions from SNP 186027 to 186627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,818 DEBUG Processing 688/1139 atomic regions from SNP 206333 to 206933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,872 DEBUG Processing 819/904 atomic regions from SNP 245652 to 246252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,898 DEBUG Processing 726/1029 atomic regions from SNP 217701 to 218301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,016 DEBUG Processing 844/862 atomic regions from SNP 253056 to 253656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,061 DEBUG Processing 622/653 atomic regions from SNP 186327 to 186927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,109 DEBUG Processing 689/1139 atomic regions from SNP 206633 to 207233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,135 DEBUG Processing 820/904 atomic regions from SNP 245952 to 246552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,179 DEBUG Processing 727/1029 atomic regions from SNP 218001 to 218601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,270 DEBUG Processing 845/862 atomic regions from SNP 253356 to 253956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,314 DEBUG Processing 623/653 atomic regions from SNP 186627 to 187227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,398 DEBUG Processing 821/904 atomic regions from SNP 246252 to 246852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,401 DEBUG Processing 690/1139 atomic regions from SNP 206933 to 207533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,479 DEBUG Processing 728/1029 atomic regions from SNP 218301 to 218901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,542 DEBUG Processing 846/862 atomic regions from SNP 253656 to 254256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,566 DEBUG Processing 624/653 atomic regions from SNP 186927 to 187527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,657 DEBUG Processing 822/904 atomic regions from SNP 246552 to 247152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,688 DEBUG Processing 691/1139 atomic regions from SNP 207233 to 207833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,770 DEBUG Processing 729/1029 atomic regions from SNP 218601 to 219201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,821 DEBUG Processing 847/862 atomic regions from SNP 253956 to 254556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,823 DEBUG Processing 625/653 atomic regions from SNP 187227 to 187827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,915 DEBUG Processing 823/904 atomic regions from SNP 246852 to 247452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,973 DEBUG Processing 692/1139 atomic regions from SNP 207533 to 208133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,056 DEBUG Processing 730/1029 atomic regions from SNP 218901 to 219501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,088 DEBUG Processing 626/653 atomic regions from SNP 187527 to 188127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,109 DEBUG Processing 848/862 atomic regions from SNP 254256 to 254856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,171 DEBUG Processing 824/904 atomic regions from SNP 247152 to 247752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,247 DEBUG Processing 693/1139 atomic regions from SNP 207833 to 208433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,340 DEBUG Processing 731/1029 atomic regions from SNP 219201 to 219801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,371 DEBUG Processing 627/653 atomic regions from SNP 187827 to 188427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,392 DEBUG Processing 849/862 atomic regions from SNP 254556 to 255156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,431 DEBUG Processing 825/904 atomic regions from SNP 247452 to 248052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,523 DEBUG Processing 694/1139 atomic regions from SNP 208133 to 208733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,621 DEBUG Processing 732/1029 atomic regions from SNP 219501 to 220101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,654 DEBUG Processing 850/862 atomic regions from SNP 254856 to 255456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,662 DEBUG Processing 628/653 atomic regions from SNP 188127 to 188727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,695 DEBUG Processing 826/904 atomic regions from SNP 247752 to 248352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,798 DEBUG Processing 695/1139 atomic regions from SNP 208433 to 209033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,911 DEBUG Processing 733/1029 atomic regions from SNP 219801 to 220401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,939 DEBUG Processing 851/862 atomic regions from SNP 255156 to 255756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,949 DEBUG Processing 629/653 atomic regions from SNP 188427 to 189027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,961 DEBUG Processing 827/904 atomic regions from SNP 248052 to 248652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,075 DEBUG Processing 696/1139 atomic regions from SNP 208733 to 209333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,209 DEBUG Processing 734/1029 atomic regions from SNP 220101 to 220701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,216 DEBUG Processing 852/862 atomic regions from SNP 255456 to 256056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,228 DEBUG Processing 828/904 atomic regions from SNP 248352 to 248952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,233 DEBUG Processing 630/653 atomic regions from SNP 188727 to 189327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,352 DEBUG Processing 697/1139 atomic regions from SNP 209033 to 209633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,476 DEBUG Processing 853/862 atomic regions from SNP 255756 to 256356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,494 DEBUG Processing 631/653 atomic regions from SNP 189027 to 189627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,495 DEBUG Processing 829/904 atomic regions from SNP 248652 to 249252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,498 DEBUG Processing 735/1029 atomic regions from SNP 220401 to 221001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,631 DEBUG Processing 698/1139 atomic regions from SNP 209333 to 209933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,742 DEBUG Processing 854/862 atomic regions from SNP 256056 to 256656 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,753 DEBUG Processing 632/653 atomic regions from SNP 189327 to 189927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,761 DEBUG Processing 830/904 atomic regions from SNP 248952 to 249552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,794 DEBUG Processing 736/1029 atomic regions from SNP 220701 to 221301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,908 DEBUG Processing 699/1139 atomic regions from SNP 209633 to 210233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,988 DEBUG Processing 855/862 atomic regions from SNP 256356 to 256956 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,000 DEBUG Processing 633/653 atomic regions from SNP 189627 to 190227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,020 DEBUG Processing 831/904 atomic regions from SNP 249252 to 249852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,092 DEBUG Processing 737/1029 atomic regions from SNP 221001 to 221601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,182 DEBUG Processing 700/1139 atomic regions from SNP 209933 to 210533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,232 DEBUG Processing 856/862 atomic regions from SNP 256656 to 257256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,244 DEBUG Processing 634/653 atomic regions from SNP 189927 to 190527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,272 DEBUG Processing 832/904 atomic regions from SNP 249552 to 250152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,393 DEBUG Processing 738/1029 atomic regions from SNP 221301 to 221901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,465 DEBUG Processing 701/1139 atomic regions from SNP 210233 to 210833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,489 DEBUG Processing 635/653 atomic regions from SNP 190227 to 190827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,491 DEBUG Processing 857/862 atomic regions from SNP 256956 to 257556 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,523 DEBUG Processing 833/904 atomic regions from SNP 249852 to 250452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,685 DEBUG Processing 739/1029 atomic regions from SNP 221601 to 222201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,742 DEBUG Processing 636/653 atomic regions from SNP 190527 to 191127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,744 DEBUG Processing 858/862 atomic regions from SNP 257256 to 257856 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,749 DEBUG Processing 702/1139 atomic regions from SNP 210533 to 211133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,779 DEBUG Processing 834/904 atomic regions from SNP 250152 to 250752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,979 DEBUG Processing 740/1029 atomic regions from SNP 221901 to 222501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,997 DEBUG Processing 859/862 atomic regions from SNP 257556 to 258156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,006 DEBUG Processing 637/653 atomic regions from SNP 190827 to 191427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,037 DEBUG Processing 835/904 atomic regions from SNP 250452 to 251052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,038 DEBUG Processing 703/1139 atomic regions from SNP 210833 to 211433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,254 DEBUG Processing 860/862 atomic regions from SNP 257856 to 258456 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,268 DEBUG Processing 638/653 atomic regions from SNP 191127 to 191727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,273 DEBUG Processing 741/1029 atomic regions from SNP 222201 to 222801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,302 DEBUG Processing 836/904 atomic regions from SNP 250752 to 251352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,333 DEBUG Processing 704/1139 atomic regions from SNP 211133 to 211733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,521 DEBUG Processing 861/862 atomic regions from SNP 258156 to 258756 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,523 DEBUG Processing 639/653 atomic regions from SNP 191427 to 192027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,559 DEBUG Processing 742/1029 atomic regions from SNP 222501 to 223101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,568 DEBUG Processing 837/904 atomic regions from SNP 251052 to 251652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,624 DEBUG Processing 705/1139 atomic regions from SNP 211433 to 212033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,794 DEBUG Processing 640/653 atomic regions from SNP 191727 to 192327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,799 DEBUG Processing 862/862 atomic regions from SNP 258456 to 259056 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,830 DEBUG Processing 838/904 atomic regions from SNP 251352 to 251952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,845 DEBUG Processing 743/1029 atomic regions from SNP 222801 to 223401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,915 DEBUG Processing 706/1139 atomic regions from SNP 211733 to 212333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,951 DEBUG Unique SNPs positions in subchromosome 1: 259057 2025-01-31 09:47:18,077 DEBUG Processing 641/653 atomic regions from SNP 192027 to 192627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,089 DEBUG Processing 839/904 atomic regions from SNP 251652 to 252252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,135 DEBUG Processing 744/1029 atomic regions from SNP 223101 to 223701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,206 DEBUG Processing 707/1139 atomic regions from SNP 212033 to 212633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,343 DEBUG Processing 840/904 atomic regions from SNP 251952 to 252552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,344 DEBUG Processing 642/653 atomic regions from SNP 192327 to 192927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,437 DEBUG Processing 745/1029 atomic regions from SNP 223401 to 224001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,489 DEBUG Processing 708/1139 atomic regions from SNP 212333 to 212933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,587 DEBUG Processing 841/904 atomic regions from SNP 252252 to 252852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,595 DEBUG Processing 643/653 atomic regions from SNP 192627 to 193227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,719 DEBUG Processing 746/1029 atomic regions from SNP 223701 to 224301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,768 DEBUG Processing 709/1139 atomic regions from SNP 212633 to 213233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,834 DEBUG Processing 842/904 atomic regions from SNP 252552 to 253152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,847 DEBUG Processing 644/653 atomic regions from SNP 192927 to 193527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,996 DEBUG Processing 747/1029 atomic regions from SNP 224001 to 224601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,053 DEBUG Processing 710/1139 atomic regions from SNP 212933 to 213533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,078 DEBUG Processing 843/904 atomic regions from SNP 252852 to 253452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,092 DEBUG Processing 645/653 atomic regions from SNP 193227 to 193827 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,285 DEBUG Processing 748/1029 atomic regions from SNP 224301 to 224901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,334 DEBUG Processing 844/904 atomic regions from SNP 253152 to 253752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,337 DEBUG Processing 711/1139 atomic regions from SNP 213233 to 213833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,365 DEBUG Processing 646/653 atomic regions from SNP 193527 to 194127 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,584 DEBUG Processing 749/1029 atomic regions from SNP 224601 to 225201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,598 DEBUG Processing 845/904 atomic regions from SNP 253452 to 254052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,625 DEBUG Processing 712/1139 atomic regions from SNP 213533 to 214133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,649 DEBUG Processing 647/653 atomic regions from SNP 193827 to 194427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,857 DEBUG Processing 846/904 atomic regions from SNP 253752 to 254352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,882 DEBUG Processing 750/1029 atomic regions from SNP 224901 to 225501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,912 DEBUG Processing 713/1139 atomic regions from SNP 213833 to 214433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,920 DEBUG Processing 648/653 atomic regions from SNP 194127 to 194727 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,114 DEBUG Processing 847/904 atomic regions from SNP 254052 to 254652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,177 DEBUG Processing 751/1029 atomic regions from SNP 225201 to 225801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,177 DEBUG Processing 649/653 atomic regions from SNP 194427 to 195027 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,199 DEBUG Processing 714/1139 atomic regions from SNP 214133 to 214733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,365 DEBUG Processing 848/904 atomic regions from SNP 254352 to 254952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,448 DEBUG Processing 650/653 atomic regions from SNP 194727 to 195327 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,455 DEBUG Processing 752/1029 atomic regions from SNP 225501 to 226101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,484 DEBUG Processing 715/1139 atomic regions from SNP 214433 to 215033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,609 DEBUG Processing 849/904 atomic regions from SNP 254652 to 255252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,726 DEBUG Processing 651/653 atomic regions from SNP 195027 to 195627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,738 DEBUG Processing 753/1029 atomic regions from SNP 225801 to 226401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,763 DEBUG Processing 716/1139 atomic regions from SNP 214733 to 215333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,850 DEBUG Processing 850/904 atomic regions from SNP 254952 to 255552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,005 DEBUG Processing 652/653 atomic regions from SNP 195327 to 195927 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,014 DEBUG Processing 754/1029 atomic regions from SNP 226101 to 226701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,053 DEBUG Processing 717/1139 atomic regions from SNP 215033 to 215633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,096 DEBUG Processing 851/904 atomic regions from SNP 255252 to 255852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,276 DEBUG Processing 653/653 atomic regions from SNP 195627 to 196227 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,285 DEBUG Processing 755/1029 atomic regions from SNP 226401 to 227001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,345 DEBUG Processing 852/904 atomic regions from SNP 255552 to 256152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,368 DEBUG Processing 718/1139 atomic regions from SNP 215333 to 215933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,420 DEBUG Unique SNPs positions in subchromosome 2: 196228 2025-01-31 09:47:21,557 DEBUG Processing 756/1029 atomic regions from SNP 226701 to 227301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,594 DEBUG Processing 853/904 atomic regions from SNP 255852 to 256452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,671 DEBUG Processing 719/1139 atomic regions from SNP 215633 to 216233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,840 DEBUG Processing 854/904 atomic regions from SNP 256152 to 256752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,842 DEBUG Processing 757/1029 atomic regions from SNP 227001 to 227601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,947 DEBUG Processing 720/1139 atomic regions from SNP 215933 to 216533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,085 DEBUG Processing 855/904 atomic regions from SNP 256452 to 257052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,133 DEBUG Processing 758/1029 atomic regions from SNP 227301 to 227901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,224 DEBUG Processing 721/1139 atomic regions from SNP 216233 to 216833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,333 DEBUG Processing 856/904 atomic regions from SNP 256752 to 257352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,431 DEBUG Processing 759/1029 atomic regions from SNP 227601 to 228201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,498 DEBUG Processing 722/1139 atomic regions from SNP 216533 to 217133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,586 DEBUG Processing 857/904 atomic regions from SNP 257052 to 257652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,709 DEBUG Processing 760/1029 atomic regions from SNP 227901 to 228501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,773 DEBUG Processing 723/1139 atomic regions from SNP 216833 to 217433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,835 DEBUG Processing 858/904 atomic regions from SNP 257352 to 257952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,990 DEBUG Processing 761/1029 atomic regions from SNP 228201 to 228801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,046 DEBUG Processing 724/1139 atomic regions from SNP 217133 to 217733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,086 DEBUG Processing 859/904 atomic regions from SNP 257652 to 258252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,294 DEBUG Processing 762/1029 atomic regions from SNP 228501 to 229101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,327 DEBUG Processing 725/1139 atomic regions from SNP 217433 to 218033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,341 DEBUG Processing 860/904 atomic regions from SNP 257952 to 258552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,597 DEBUG Processing 861/904 atomic regions from SNP 258252 to 258852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,598 DEBUG Processing 763/1029 atomic regions from SNP 228801 to 229401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,613 DEBUG Processing 726/1139 atomic regions from SNP 217733 to 218333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,853 DEBUG Processing 862/904 atomic regions from SNP 258552 to 259152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,881 DEBUG Processing 764/1029 atomic regions from SNP 229101 to 229701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,898 DEBUG Processing 727/1139 atomic regions from SNP 218033 to 218633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,108 DEBUG Processing 863/904 atomic regions from SNP 258852 to 259452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,160 DEBUG Processing 765/1029 atomic regions from SNP 229401 to 230001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,182 DEBUG Processing 728/1139 atomic regions from SNP 218333 to 218933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,357 DEBUG Processing 864/904 atomic regions from SNP 259152 to 259752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,434 DEBUG Processing 766/1029 atomic regions from SNP 229701 to 230301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,463 DEBUG Processing 729/1139 atomic regions from SNP 218633 to 219233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,598 DEBUG Processing 865/904 atomic regions from SNP 259452 to 260052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,710 DEBUG Processing 767/1029 atomic regions from SNP 230001 to 230601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,738 DEBUG Processing 730/1139 atomic regions from SNP 218933 to 219533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,836 DEBUG Processing 866/904 atomic regions from SNP 259752 to 260352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,983 DEBUG Processing 768/1029 atomic regions from SNP 230301 to 230901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,018 DEBUG Processing 731/1139 atomic regions from SNP 219233 to 219833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,080 DEBUG Processing 867/904 atomic regions from SNP 260052 to 260652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,277 DEBUG Processing 769/1029 atomic regions from SNP 230601 to 231201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,313 DEBUG Processing 732/1139 atomic regions from SNP 219533 to 220133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,329 DEBUG Processing 868/904 atomic regions from SNP 260352 to 260952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,557 DEBUG Processing 770/1029 atomic regions from SNP 230901 to 231501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,581 DEBUG Processing 869/904 atomic regions from SNP 260652 to 261252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,610 DEBUG Processing 733/1139 atomic regions from SNP 219833 to 220433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,758 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:47:25,828 DEBUG Processing 870/904 atomic regions from SNP 260952 to 261552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,832 DEBUG Processing 771/1029 atomic regions from SNP 231201 to 231801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,913 DEBUG Processing 734/1139 atomic regions from SNP 220133 to 220733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,075 DEBUG Processing 871/904 atomic regions from SNP 261252 to 261852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,106 DEBUG Processing 772/1029 atomic regions from SNP 231501 to 232101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,216 DEBUG Processing 735/1139 atomic regions from SNP 220433 to 221033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,318 DEBUG Processing 872/904 atomic regions from SNP 261552 to 262152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,377 DEBUG Processing 773/1029 atomic regions from SNP 231801 to 232401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,526 DEBUG Processing 736/1139 atomic regions from SNP 220733 to 221333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,561 DEBUG Processing 873/904 atomic regions from SNP 261852 to 262452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,649 DEBUG Processing 774/1029 atomic regions from SNP 232101 to 232701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,811 DEBUG Processing 874/904 atomic regions from SNP 262152 to 262752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,817 DEBUG Processing 737/1139 atomic regions from SNP 221033 to 221633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,925 DEBUG Processing 775/1029 atomic regions from SNP 232401 to 233001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,061 DEBUG Processing 875/904 atomic regions from SNP 262452 to 263052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,098 DEBUG Processing 738/1139 atomic regions from SNP 221333 to 221933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,201 DEBUG Processing 776/1029 atomic regions from SNP 232701 to 233301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,316 DEBUG Processing 876/904 atomic regions from SNP 262752 to 263352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,380 DEBUG Processing 739/1139 atomic regions from SNP 221633 to 222233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,472 DEBUG Processing 777/1029 atomic regions from SNP 233001 to 233601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,567 DEBUG Processing 877/904 atomic regions from SNP 263052 to 263652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,660 DEBUG Processing 740/1139 atomic regions from SNP 221933 to 222533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,744 DEBUG Processing 778/1029 atomic regions from SNP 233301 to 233901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,816 DEBUG Processing 878/904 atomic regions from SNP 263352 to 263952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,938 DEBUG Processing 741/1139 atomic regions from SNP 222233 to 222833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,011 DEBUG Processing 779/1029 atomic regions from SNP 233601 to 234201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,059 DEBUG Processing 879/904 atomic regions from SNP 263652 to 264252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,210 DEBUG Processing 742/1139 atomic regions from SNP 222533 to 223133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,279 DEBUG Processing 780/1029 atomic regions from SNP 233901 to 234501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,307 DEBUG Processing 880/904 atomic regions from SNP 263952 to 264552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,487 DEBUG Processing 743/1139 atomic regions from SNP 222833 to 223433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,551 DEBUG Processing 781/1029 atomic regions from SNP 234201 to 234801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,555 DEBUG Processing 881/904 atomic regions from SNP 264252 to 264852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,761 DEBUG Processing 744/1139 atomic regions from SNP 223133 to 223733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,808 DEBUG Processing 882/904 atomic regions from SNP 264552 to 265152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,825 DEBUG Processing 782/1029 atomic regions from SNP 234501 to 235101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,040 DEBUG Processing 745/1139 atomic regions from SNP 223433 to 224033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,066 DEBUG Processing 883/904 atomic regions from SNP 264852 to 265452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,100 DEBUG Processing 783/1029 atomic regions from SNP 234801 to 235401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,321 DEBUG Processing 746/1139 atomic regions from SNP 223733 to 224333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,322 DEBUG Processing 884/904 atomic regions from SNP 265152 to 265752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,378 DEBUG Processing 784/1029 atomic regions from SNP 235101 to 235701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,583 DEBUG Processing 885/904 atomic regions from SNP 265452 to 266052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,605 DEBUG Processing 747/1139 atomic regions from SNP 224033 to 224633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,661 DEBUG Processing 785/1029 atomic regions from SNP 235401 to 236001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,835 DEBUG Processing 886/904 atomic regions from SNP 265752 to 266352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,890 DEBUG Processing 748/1139 atomic regions from SNP 224333 to 224933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,944 DEBUG Processing 786/1029 atomic regions from SNP 235701 to 236301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,092 DEBUG Processing 887/904 atomic regions from SNP 266052 to 266652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,192 DEBUG Processing 749/1139 atomic regions from SNP 224633 to 225233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,228 DEBUG Processing 787/1029 atomic regions from SNP 236001 to 236601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,340 DEBUG Processing 888/904 atomic regions from SNP 266352 to 266952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,507 DEBUG Processing 788/1029 atomic regions from SNP 236301 to 236901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,515 DEBUG Processing 750/1139 atomic regions from SNP 224933 to 225533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,587 DEBUG Processing 889/904 atomic regions from SNP 266652 to 267252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,782 DEBUG Processing 789/1029 atomic regions from SNP 236601 to 237201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,811 DEBUG Processing 751/1139 atomic regions from SNP 225233 to 225833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,844 DEBUG Processing 890/904 atomic regions from SNP 266952 to 267552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,063 DEBUG Processing 790/1029 atomic regions from SNP 236901 to 237501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,115 DEBUG Processing 891/904 atomic regions from SNP 267252 to 267852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,133 DEBUG Processing 752/1139 atomic regions from SNP 225533 to 226133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,340 DEBUG Processing 791/1029 atomic regions from SNP 237201 to 237801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,380 DEBUG Processing 892/904 atomic regions from SNP 267552 to 268152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,449 DEBUG Processing 753/1139 atomic regions from SNP 225833 to 226433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,610 DEBUG Processing 792/1029 atomic regions from SNP 237501 to 238101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,636 DEBUG Processing 893/904 atomic regions from SNP 267852 to 268452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,736 DEBUG Processing 754/1139 atomic regions from SNP 226133 to 226733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,878 DEBUG Processing 793/1029 atomic regions from SNP 237801 to 238401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,888 DEBUG Processing 894/904 atomic regions from SNP 268152 to 268752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,048 DEBUG Processing 755/1139 atomic regions from SNP 226433 to 227033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,144 DEBUG Processing 895/904 atomic regions from SNP 268452 to 269052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,154 DEBUG Processing 794/1029 atomic regions from SNP 238101 to 238701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,348 DEBUG Processing 756/1139 atomic regions from SNP 226733 to 227333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,394 DEBUG Processing 896/904 atomic regions from SNP 268752 to 269352 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,426 DEBUG Processing 795/1029 atomic regions from SNP 238401 to 239001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,649 DEBUG Processing 897/904 atomic regions from SNP 269052 to 269652 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,654 DEBUG Processing 757/1139 atomic regions from SNP 227033 to 227633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,696 DEBUG Processing 796/1029 atomic regions from SNP 238701 to 239301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,900 DEBUG Processing 898/904 atomic regions from SNP 269352 to 269952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,962 DEBUG Processing 758/1139 atomic regions from SNP 227333 to 227933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,968 DEBUG Processing 797/1029 atomic regions from SNP 239001 to 239601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,152 DEBUG Processing 899/904 atomic regions from SNP 269652 to 270252 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,242 DEBUG Processing 798/1029 atomic regions from SNP 239301 to 239901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,267 DEBUG Processing 759/1139 atomic regions from SNP 227633 to 228233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,402 DEBUG Processing 900/904 atomic regions from SNP 269952 to 270552 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,454 DEBUG Subchromosome time: 200.48498934798408, subchromosome SNPs: 196228 2025-01-31 09:47:33,455 DEBUG Estimated BADs: [2.12, 0.42, 1.06, 0.71, 4.24, 2.12, 0.71, 4.24, 4.24, 0.71, 2.12, 0.53, 1.06, 2.12, 4.24, 0.71, 0.21, 2.12, 4.24, 6.37, 2.12, 4.24, 8.49] SNP counts: [22663, 4218, 6663, 16868, 1154, 2693, 9154, 3049, 11244, 6565, 17996, 27588, 28837, 17446, 6855, 2717, 2651, 2100, 29429, 19197, 7481, 14775, 1347] SNP IDs counts: [22663, 4218, 6663, 16868, 1154, 2693, 9154, 3049, 11244, 6565, 17996, 27588, 28837, 17446, 6855, 2717, 2651, 2100, 29429, 19197, 7481, 14775, 1347] Critical gap: 683317bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 16.32Mbp, 18.90Mbp, 22.85Mbp, 32.65Mbp, 33.27Mbp, 34.76Mbp, 40.13Mbp, 41.86Mbp[0.87Mbp], 48.78Mbp, 52.69Mbp, 64.23Mbp, 80.61Mbp, 97.17Mbp, 106.71Mbp, 110.40Mbp, 112.01Mbp, 113.83Mbp, 115.04Mbp, 131.76Mbp, 141.79Mbp, 147.87Mbp, 155.56Mbp, 156.51Mbp] 2025-01-31 09:47:33,455 DEBUG chr4 time: 200.4855671239784 s 2025-01-31 09:47:33,515 DEBUG Processing 799/1029 atomic regions from SNP 239601 to 240201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,581 DEBUG Processing 760/1139 atomic regions from SNP 227933 to 228533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,611 DEBUG chr4: Fitting background model for 23 segments 2025-01-31 09:47:33,658 DEBUG Processing 901/904 atomic regions from SNP 270252 to 270852 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,780 DEBUG Processing 800/1029 atomic regions from SNP 239901 to 240501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,885 DEBUG Processing 761/1139 atomic regions from SNP 228233 to 228833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,912 DEBUG Processing 902/904 atomic regions from SNP 270552 to 271152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,048 DEBUG Processing 801/1029 atomic regions from SNP 240201 to 240801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,167 DEBUG Processing 903/904 atomic regions from SNP 270852 to 271452 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,187 DEBUG Processing 762/1139 atomic regions from SNP 228533 to 229133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,318 DEBUG Processing 802/1029 atomic regions from SNP 240501 to 241101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,420 DEBUG Processing 904/904 atomic regions from SNP 271152 to 271752 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,480 DEBUG Processing 763/1139 atomic regions from SNP 228833 to 229433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,555 DEBUG Unique SNPs positions in subchromosome 1: 271753 2025-01-31 09:47:34,583 DEBUG Processing 803/1029 atomic regions from SNP 240801 to 241401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,787 DEBUG Processing 764/1139 atomic regions from SNP 229133 to 229733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,847 DEBUG Processing 804/1029 atomic regions from SNP 241101 to 241701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,093 DEBUG Processing 765/1139 atomic regions from SNP 229433 to 230033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,111 DEBUG Processing 805/1029 atomic regions from SNP 241401 to 242001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,384 DEBUG Processing 806/1029 atomic regions from SNP 241701 to 242301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,393 DEBUG Processing 766/1139 atomic regions from SNP 229733 to 230333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,666 DEBUG Processing 807/1029 atomic regions from SNP 242001 to 242601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,698 DEBUG Processing 767/1139 atomic regions from SNP 230033 to 230633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,944 DEBUG Processing 808/1029 atomic regions from SNP 242301 to 242901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,999 DEBUG Processing 768/1139 atomic regions from SNP 230333 to 230933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,222 DEBUG Processing 809/1029 atomic regions from SNP 242601 to 243201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,311 DEBUG Processing 769/1139 atomic regions from SNP 230633 to 231233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,497 DEBUG Processing 810/1029 atomic regions from SNP 242901 to 243501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,620 DEBUG Processing 770/1139 atomic regions from SNP 230933 to 231533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,761 DEBUG Processing 811/1029 atomic regions from SNP 243201 to 243801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,936 DEBUG Processing 771/1139 atomic regions from SNP 231233 to 231833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,033 DEBUG Processing 812/1029 atomic regions from SNP 243501 to 244101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,242 DEBUG Processing 772/1139 atomic regions from SNP 231533 to 232133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,290 DEBUG Subchromosome time: 269.27420935500413, subchromosome SNPs: 259057 2025-01-31 09:47:37,291 DEBUG Estimated BADs: [2.14, 0.71, 2.14, 6.41, 2.14, 4.27, 2.14, 1.07, 2.14, 0.43, 2.14, 0.53, 2.14, 0.43, 1.07, 2.14, 4.27, 6.41, 2.14, 10.68, 2.14, 6.41, 4.27] SNP counts: [4908, 22825, 4453, 2826, 9686, 11632, 4836, 20381, 6632, 14380, 9891, 5144, 12241, 9005, 14208, 17217, 30442, 9846, 8120, 580, 7597, 7594, 24613] SNP IDs counts: [4908, 22825, 4453, 2826, 9686, 11632, 4836, 20381, 6632, 14380, 9891, 5144, 12241, 9005, 14208, 17217, 30442, 9846, 8120, 580, 7597, 7594, 24613] Critical gap: 671337bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.89Mbp, 20.87Mbp, 23.38Mbp, 24.90Mbp, 30.46Mbp, 36.69Mbp, 39.32Mbp, 51.01Mbp, 54.57Mbp, 63.21Mbp, 68.63Mbp, 71.70Mbp, 78.42Mbp, 83.72Mbp, 91.96Mbp, 103.59Mbp, 120.10Mbp, 125.34Mbp, 129.72Mbp, 130.08Mbp, 134.14Mbp, 138.28Mbp, 151.83Mbp] 2025-01-31 09:47:37,291 DEBUG chr5 time: 269.2747271390399 s 2025-01-31 09:47:37,304 DEBUG Processing 813/1029 atomic regions from SNP 243801 to 244401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,440 DEBUG chr5: Fitting background model for 23 segments 2025-01-31 09:47:37,558 DEBUG Processing 773/1139 atomic regions from SNP 231833 to 232433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,584 DEBUG Processing 814/1029 atomic regions from SNP 244101 to 244701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,864 DEBUG Processing 815/1029 atomic regions from SNP 244401 to 245001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,877 DEBUG Processing 774/1139 atomic regions from SNP 232133 to 232733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,143 DEBUG Processing 816/1029 atomic regions from SNP 244701 to 245301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,185 DEBUG Processing 775/1139 atomic regions from SNP 232433 to 233033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,421 DEBUG Processing 817/1029 atomic regions from SNP 245001 to 245601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,481 DEBUG Processing 776/1139 atomic regions from SNP 232733 to 233333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,701 DEBUG Processing 818/1029 atomic regions from SNP 245301 to 245901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,779 DEBUG Processing 777/1139 atomic regions from SNP 233033 to 233633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,974 DEBUG Processing 819/1029 atomic regions from SNP 245601 to 246201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,087 DEBUG Processing 778/1139 atomic regions from SNP 233333 to 233933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,242 DEBUG Processing 820/1029 atomic regions from SNP 245901 to 246501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,399 DEBUG Processing 779/1139 atomic regions from SNP 233633 to 234233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,526 DEBUG Processing 821/1029 atomic regions from SNP 246201 to 246801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,691 DEBUG Processing 780/1139 atomic regions from SNP 233933 to 234533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,797 DEBUG Processing 822/1029 atomic regions from SNP 246501 to 247101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,007 DEBUG Processing 781/1139 atomic regions from SNP 234233 to 234833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,078 DEBUG Processing 823/1029 atomic regions from SNP 246801 to 247401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,334 DEBUG Processing 782/1139 atomic regions from SNP 234533 to 235133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,362 DEBUG Processing 824/1029 atomic regions from SNP 247101 to 247701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,647 DEBUG Processing 825/1029 atomic regions from SNP 247401 to 248001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,663 DEBUG Processing 783/1139 atomic regions from SNP 234833 to 235433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,932 DEBUG Processing 826/1029 atomic regions from SNP 247701 to 248301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,988 DEBUG Processing 784/1139 atomic regions from SNP 235133 to 235733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,213 DEBUG Processing 827/1029 atomic regions from SNP 248001 to 248601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,302 DEBUG Processing 785/1139 atomic regions from SNP 235433 to 236033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,497 DEBUG Processing 828/1029 atomic regions from SNP 248301 to 248901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,621 DEBUG Processing 786/1139 atomic regions from SNP 235733 to 236333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,773 DEBUG Processing 829/1029 atomic regions from SNP 248601 to 249201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,926 DEBUG Processing 787/1139 atomic regions from SNP 236033 to 236633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,052 DEBUG Processing 830/1029 atomic regions from SNP 248901 to 249501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,224 DEBUG Processing 788/1139 atomic regions from SNP 236333 to 236933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,327 DEBUG Processing 831/1029 atomic regions from SNP 249201 to 249801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,508 DEBUG Processing 789/1139 atomic regions from SNP 236633 to 237233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,583 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:47:42,585 DEBUG chr6: Signal quantile: 0.994. signal threshold: 16. Best RMSEA: 0.020 2025-01-31 09:47:42,601 DEBUG Processing 832/1029 atomic regions from SNP 249501 to 250101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,790 DEBUG Processing 790/1139 atomic regions from SNP 236933 to 237533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,881 DEBUG Processing 833/1029 atomic regions from SNP 249801 to 250401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,088 DEBUG Processing 791/1139 atomic regions from SNP 237233 to 237833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,175 DEBUG Processing 834/1029 atomic regions from SNP 250101 to 250701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,382 DEBUG Processing 792/1139 atomic regions from SNP 237533 to 238133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,445 DEBUG Processing 835/1029 atomic regions from SNP 250401 to 251001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,668 DEBUG Processing 793/1139 atomic regions from SNP 237833 to 238433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,729 DEBUG Processing 836/1029 atomic regions from SNP 250701 to 251301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,958 DEBUG Processing 794/1139 atomic regions from SNP 238133 to 238733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,996 DEBUG Processing 837/1029 atomic regions from SNP 251001 to 251601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,250 DEBUG Processing 795/1139 atomic regions from SNP 238433 to 239033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,274 DEBUG Processing 838/1029 atomic regions from SNP 251301 to 251901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,545 DEBUG Processing 796/1139 atomic regions from SNP 238733 to 239333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,584 DEBUG Processing 839/1029 atomic regions from SNP 251601 to 252201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,845 DEBUG Processing 797/1139 atomic regions from SNP 239033 to 239633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,886 DEBUG Processing 840/1029 atomic regions from SNP 251901 to 252501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,134 DEBUG Processing 798/1139 atomic regions from SNP 239333 to 239933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,170 DEBUG Processing 841/1029 atomic regions from SNP 252201 to 252801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,433 DEBUG Processing 799/1139 atomic regions from SNP 239633 to 240233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,441 DEBUG chr6 total SNP count: 258510 2025-01-31 09:47:45,441 DEBUG chr6 length: 149736546 2025-01-31 09:47:45,441 DEBUG ----------------------------------------- 2025-01-31 09:47:45,442 INFO Processing SNPs in chr6 2025-01-31 09:47:45,457 DEBUG Processing 842/1029 atomic regions from SNP 252501 to 253101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,709 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 258510)] 2025-01-31 09:47:45,748 DEBUG Processing 800/1139 atomic regions from SNP 239933 to 240533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,751 DEBUG Processing 843/1029 atomic regions from SNP 252801 to 253401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,891 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:46,028 DEBUG Processing 844/1029 atomic regions from SNP 253101 to 253701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,046 DEBUG Processing 801/1139 atomic regions from SNP 240233 to 240833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,305 DEBUG Processing 845/1029 atomic regions from SNP 253401 to 254001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,348 DEBUG Processing 802/1139 atomic regions from SNP 240533 to 241133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,595 DEBUG Processing 846/1029 atomic regions from SNP 253701 to 254301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,647 DEBUG Processing 803/1139 atomic regions from SNP 240833 to 241433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,882 DEBUG Processing 847/1029 atomic regions from SNP 254001 to 254601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,945 DEBUG Processing 804/1139 atomic regions from SNP 241133 to 241733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,160 DEBUG Processing 848/1029 atomic regions from SNP 254301 to 254901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,234 DEBUG Processing 805/1139 atomic regions from SNP 241433 to 242033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,438 DEBUG Processing 849/1029 atomic regions from SNP 254601 to 255201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,537 DEBUG Processing 806/1139 atomic regions from SNP 241733 to 242333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,705 DEBUG Processing 850/1029 atomic regions from SNP 254901 to 255501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,819 DEBUG Processing 807/1139 atomic regions from SNP 242033 to 242633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,979 DEBUG Processing 851/1029 atomic regions from SNP 255201 to 255801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,109 DEBUG Processing 808/1139 atomic regions from SNP 242333 to 242933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,261 DEBUG Processing 852/1029 atomic regions from SNP 255501 to 256101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,397 DEBUG Processing 809/1139 atomic regions from SNP 242633 to 243233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,544 DEBUG Processing 853/1029 atomic regions from SNP 255801 to 256401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,681 DEBUG Processing 810/1139 atomic regions from SNP 242933 to 243533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,830 DEBUG Processing 854/1029 atomic regions from SNP 256101 to 256701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,964 DEBUG Processing 811/1139 atomic regions from SNP 243233 to 243833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,123 DEBUG Processing 855/1029 atomic regions from SNP 256401 to 257001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,246 DEBUG Processing 812/1139 atomic regions from SNP 243533 to 244133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,423 DEBUG Processing 856/1029 atomic regions from SNP 256701 to 257301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,528 DEBUG Processing 813/1139 atomic regions from SNP 243833 to 244433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,708 DEBUG Processing 857/1029 atomic regions from SNP 257001 to 257601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,818 DEBUG Processing 814/1139 atomic regions from SNP 244133 to 244733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,993 DEBUG Processing 858/1029 atomic regions from SNP 257301 to 257901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,108 DEBUG Processing 815/1139 atomic regions from SNP 244433 to 245033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,275 DEBUG Processing 859/1029 atomic regions from SNP 257601 to 258201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,402 DEBUG Processing 816/1139 atomic regions from SNP 244733 to 245333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,496 DEBUG Subchromosome time: 282.5683600119082, subchromosome SNPs: 271753 2025-01-31 09:47:50,497 DEBUG Estimated BADs: [0.81, 2.43, 1.22, 4.86, 1.22, 2.43, 0.81, 0.24, 1.22, 4.86, 19.44, 2.43, 1.22, 2.43, 4.86, 14.58, 2.43, 17.01, 4.86, 7.29, 2.43, 7.29, 2.43, 7.29, 2.43, 4.86, 2.43, 9.72, 2.43, 0.35, 1.22, 0.41, 2.43, 0.61] SNP counts: [9138, 2997, 14457, 1578, 14072, 18356, 9604, 4514, 3104, 2933, 601, 35074, 13501, 8039, 6983, 5099, 5703, 4501, 6140, 15453, 11707, 1841, 7989, 3389, 7778, 7880, 6513, 1027, 6167, 3890, 9895, 7802, 6020, 8008] SNP IDs counts: [9138, 2997, 14457, 1578, 14072, 18356, 9604, 4514, 3104, 2933, 601, 35074, 13501, 8039, 6983, 5099, 5703, 4501, 6140, 15453, 11707, 1841, 7989, 3389, 7778, 7880, 6513, 1027, 6167, 3890, 9895, 7802, 6020, 8008] Critical gap: 691673bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.53Mbp, 10.20Mbp, 19.15Mbp, 20.03Mbp, 28.28Mbp, 38.53Mbp, 44.50Mbp, 47.56Mbp, 49.54Mbp, 51.22Mbp, 51.53Mbp, 71.56Mbp, 79.51Mbp, 84.01Mbp, 87.74Mbp, 90.47Mbp, 94.31Mbp, 96.81Mbp, 100.38Mbp, 108.71Mbp, 115.71Mbp, 116.69Mbp, 121.15Mbp, 122.92Mbp, 127.24Mbp, 131.56Mbp, 135.27Mbp, 135.81Mbp, 139.22Mbp, 141.67Mbp, 147.15Mbp, 151.72Mbp, 154.98Mbp, 160.04Mbp] 2025-01-31 09:47:50,497 DEBUG chr3 time: 282.5689689179417 s 2025-01-31 09:47:50,574 DEBUG Processing 860/1029 atomic regions from SNP 257901 to 258501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,683 DEBUG chr3: Fitting background model for 34 segments 2025-01-31 09:47:50,714 DEBUG Processing 817/1139 atomic regions from SNP 245033 to 245633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,865 DEBUG Processing 861/1029 atomic regions from SNP 258201 to 258801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,011 DEBUG Processing 818/1139 atomic regions from SNP 245333 to 245933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,155 DEBUG Processing 862/1029 atomic regions from SNP 258501 to 259101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,304 DEBUG Processing 819/1139 atomic regions from SNP 245633 to 246233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,442 DEBUG Processing 863/1029 atomic regions from SNP 258801 to 259401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,591 DEBUG Processing 820/1139 atomic regions from SNP 245933 to 246533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,729 DEBUG Processing 864/1029 atomic regions from SNP 259101 to 259701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,887 DEBUG Processing 821/1139 atomic regions from SNP 246233 to 246833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,017 DEBUG Processing 865/1029 atomic regions from SNP 259401 to 260001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,174 DEBUG Processing 822/1139 atomic regions from SNP 246533 to 247133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,302 DEBUG Processing 866/1029 atomic regions from SNP 259701 to 260301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,469 DEBUG Processing 823/1139 atomic regions from SNP 246833 to 247433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,591 DEBUG Processing 867/1029 atomic regions from SNP 260001 to 260601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,762 DEBUG Processing 824/1139 atomic regions from SNP 247133 to 247733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,882 DEBUG Processing 868/1029 atomic regions from SNP 260301 to 260901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,059 DEBUG Processing 825/1139 atomic regions from SNP 247433 to 248033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,176 DEBUG Processing 869/1029 atomic regions from SNP 260601 to 261201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,355 DEBUG Processing 826/1139 atomic regions from SNP 247733 to 248333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,469 DEBUG Processing 870/1029 atomic regions from SNP 260901 to 261501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,651 DEBUG Processing 827/1139 atomic regions from SNP 248033 to 248633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,765 DEBUG Processing 871/1029 atomic regions from SNP 261201 to 261801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,971 DEBUG Processing 828/1139 atomic regions from SNP 248333 to 248933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,059 DEBUG Processing 872/1029 atomic regions from SNP 261501 to 262101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,289 DEBUG Processing 829/1139 atomic regions from SNP 248633 to 249233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,359 DEBUG Processing 873/1029 atomic regions from SNP 261801 to 262401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,588 DEBUG Processing 830/1139 atomic regions from SNP 248933 to 249533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,655 DEBUG Processing 874/1029 atomic regions from SNP 262101 to 262701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,884 DEBUG Processing 831/1139 atomic regions from SNP 249233 to 249833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,947 DEBUG Processing 875/1029 atomic regions from SNP 262401 to 263001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,182 DEBUG Processing 832/1139 atomic regions from SNP 249533 to 250133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,237 DEBUG Processing 876/1029 atomic regions from SNP 262701 to 263301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,478 DEBUG Processing 833/1139 atomic regions from SNP 249833 to 250433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,528 DEBUG Processing 877/1029 atomic regions from SNP 263001 to 263601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,774 DEBUG Processing 834/1139 atomic regions from SNP 250133 to 250733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,818 DEBUG Processing 878/1029 atomic regions from SNP 263301 to 263901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,076 DEBUG Processing 835/1139 atomic regions from SNP 250433 to 251033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,114 DEBUG Processing 879/1029 atomic regions from SNP 263601 to 264201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,375 DEBUG Processing 836/1139 atomic regions from SNP 250733 to 251333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,406 DEBUG Processing 880/1029 atomic regions from SNP 263901 to 264501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,676 DEBUG Processing 837/1139 atomic regions from SNP 251033 to 251633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,715 DEBUG Processing 881/1029 atomic regions from SNP 264201 to 264801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,977 DEBUG Processing 838/1139 atomic regions from SNP 251333 to 251933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,024 DEBUG Processing 882/1029 atomic regions from SNP 264501 to 265101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,270 DEBUG Processing 839/1139 atomic regions from SNP 251633 to 252233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,316 DEBUG Processing 883/1029 atomic regions from SNP 264801 to 265401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,573 DEBUG Processing 840/1139 atomic regions from SNP 251933 to 252533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,613 DEBUG Processing 884/1029 atomic regions from SNP 265101 to 265701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,867 DEBUG Processing 841/1139 atomic regions from SNP 252233 to 252833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,907 DEBUG Processing 885/1029 atomic regions from SNP 265401 to 266001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,157 DEBUG Processing 842/1139 atomic regions from SNP 252533 to 253133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,205 DEBUG Processing 886/1029 atomic regions from SNP 265701 to 266301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,456 DEBUG Processing 843/1139 atomic regions from SNP 252833 to 253433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,521 DEBUG Processing 887/1029 atomic regions from SNP 266001 to 266601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,756 DEBUG Processing 844/1139 atomic regions from SNP 253133 to 253733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,833 DEBUG Processing 888/1029 atomic regions from SNP 266301 to 266901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,046 DEBUG Processing 845/1139 atomic regions from SNP 253433 to 254033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,154 DEBUG Processing 889/1029 atomic regions from SNP 266601 to 267201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,339 DEBUG Processing 846/1139 atomic regions from SNP 253733 to 254333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,450 DEBUG Processing 890/1029 atomic regions from SNP 266901 to 267501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,641 DEBUG Processing 847/1139 atomic regions from SNP 254033 to 254633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,764 DEBUG Processing 891/1029 atomic regions from SNP 267201 to 267801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,936 DEBUG Processing 848/1139 atomic regions from SNP 254333 to 254933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,073 DEBUG Processing 892/1029 atomic regions from SNP 267501 to 268101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,228 DEBUG Processing 849/1139 atomic regions from SNP 254633 to 255233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,366 DEBUG Processing 893/1029 atomic regions from SNP 267801 to 268401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,530 DEBUG Processing 850/1139 atomic regions from SNP 254933 to 255533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,668 DEBUG Processing 894/1029 atomic regions from SNP 268101 to 268701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,824 DEBUG Processing 851/1139 atomic regions from SNP 255233 to 255833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,978 DEBUG Processing 895/1029 atomic regions from SNP 268401 to 269001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,121 DEBUG Processing 852/1139 atomic regions from SNP 255533 to 256133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,292 DEBUG Processing 896/1029 atomic regions from SNP 268701 to 269301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,417 DEBUG Processing 853/1139 atomic regions from SNP 255833 to 256433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,595 DEBUG Processing 897/1029 atomic regions from SNP 269001 to 269601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,717 DEBUG Processing 854/1139 atomic regions from SNP 256133 to 256733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,883 DEBUG Processing 898/1029 atomic regions from SNP 269301 to 269901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,020 DEBUG Processing 855/1139 atomic regions from SNP 256433 to 257033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,153 DEBUG Processing 899/1029 atomic regions from SNP 269601 to 270201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,330 DEBUG Processing 856/1139 atomic regions from SNP 256733 to 257333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,434 DEBUG Processing 900/1029 atomic regions from SNP 269901 to 270501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,632 DEBUG Processing 857/1139 atomic regions from SNP 257033 to 257633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,720 DEBUG Processing 901/1029 atomic regions from SNP 270201 to 270801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,936 DEBUG Processing 858/1139 atomic regions from SNP 257333 to 257933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,049 DEBUG Processing 902/1029 atomic regions from SNP 270501 to 271101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,231 DEBUG Processing 859/1139 atomic regions from SNP 257633 to 258233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,368 DEBUG Processing 903/1029 atomic regions from SNP 270801 to 271401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,533 DEBUG Processing 860/1139 atomic regions from SNP 257933 to 258533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,676 DEBUG Processing 904/1029 atomic regions from SNP 271101 to 271701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,833 DEBUG Processing 861/1139 atomic regions from SNP 258233 to 258833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,977 DEBUG Processing 905/1029 atomic regions from SNP 271401 to 272001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,132 DEBUG Processing 862/1139 atomic regions from SNP 258533 to 259133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,290 DEBUG Processing 906/1029 atomic regions from SNP 271701 to 272301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,429 DEBUG Processing 863/1139 atomic regions from SNP 258833 to 259433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,591 DEBUG Processing 907/1029 atomic regions from SNP 272001 to 272601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,723 DEBUG Processing 864/1139 atomic regions from SNP 259133 to 259733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,892 DEBUG Processing 908/1029 atomic regions from SNP 272301 to 272901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,059 DEBUG Processing 865/1139 atomic regions from SNP 259433 to 260033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,203 DEBUG Processing 909/1029 atomic regions from SNP 272601 to 273201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,382 DEBUG Processing 866/1139 atomic regions from SNP 259733 to 260333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,512 DEBUG Processing 910/1029 atomic regions from SNP 272901 to 273501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,687 DEBUG Processing 867/1139 atomic regions from SNP 260033 to 260633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,820 DEBUG Processing 911/1029 atomic regions from SNP 273201 to 273801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,986 DEBUG Processing 868/1139 atomic regions from SNP 260333 to 260933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,132 DEBUG Processing 912/1029 atomic regions from SNP 273501 to 274101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,283 DEBUG Processing 869/1139 atomic regions from SNP 260633 to 261233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,443 DEBUG Processing 913/1029 atomic regions from SNP 273801 to 274401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,606 DEBUG Processing 870/1139 atomic regions from SNP 260933 to 261533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,749 DEBUG Processing 914/1029 atomic regions from SNP 274101 to 274701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,939 DEBUG Processing 871/1139 atomic regions from SNP 261233 to 261833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,062 DEBUG Processing 915/1029 atomic regions from SNP 274401 to 275001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,260 DEBUG Processing 872/1139 atomic regions from SNP 261533 to 262133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,384 DEBUG Processing 916/1029 atomic regions from SNP 274701 to 275301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,566 DEBUG Processing 873/1139 atomic regions from SNP 261833 to 262433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,708 DEBUG Processing 917/1029 atomic regions from SNP 275001 to 275601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,870 DEBUG Processing 874/1139 atomic regions from SNP 262133 to 262733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,024 DEBUG Processing 918/1029 atomic regions from SNP 275301 to 275901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,184 DEBUG Processing 875/1139 atomic regions from SNP 262433 to 263033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,321 DEBUG Processing 919/1029 atomic regions from SNP 275601 to 276201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,493 DEBUG Processing 876/1139 atomic regions from SNP 262733 to 263333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,640 DEBUG Processing 920/1029 atomic regions from SNP 275901 to 276501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,802 DEBUG Processing 877/1139 atomic regions from SNP 263033 to 263633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,967 DEBUG Processing 921/1029 atomic regions from SNP 276201 to 276801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,104 DEBUG Processing 878/1139 atomic regions from SNP 263333 to 263933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,283 DEBUG Processing 922/1029 atomic regions from SNP 276501 to 277101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,419 DEBUG Processing 879/1139 atomic regions from SNP 263633 to 264233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,615 DEBUG Processing 923/1029 atomic regions from SNP 276801 to 277401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,733 DEBUG Processing 880/1139 atomic regions from SNP 263933 to 264533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,917 DEBUG Processing 924/1029 atomic regions from SNP 277101 to 277701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,048 DEBUG Processing 881/1139 atomic regions from SNP 264233 to 264833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,225 DEBUG Processing 925/1029 atomic regions from SNP 277401 to 278001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,357 DEBUG Processing 882/1139 atomic regions from SNP 264533 to 265133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,559 DEBUG Processing 926/1029 atomic regions from SNP 277701 to 278301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,655 DEBUG Processing 883/1139 atomic regions from SNP 264833 to 265433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,874 DEBUG Processing 927/1029 atomic regions from SNP 278001 to 278601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,958 DEBUG Processing 884/1139 atomic regions from SNP 265133 to 265733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,195 DEBUG Processing 928/1029 atomic regions from SNP 278301 to 278901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,268 DEBUG Processing 885/1139 atomic regions from SNP 265433 to 266033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,509 DEBUG Processing 929/1029 atomic regions from SNP 278601 to 279201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,567 DEBUG Processing 886/1139 atomic regions from SNP 265733 to 266333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,807 DEBUG Processing 930/1029 atomic regions from SNP 278901 to 279501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,876 DEBUG Processing 887/1139 atomic regions from SNP 266033 to 266633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,112 DEBUG Processing 931/1029 atomic regions from SNP 279201 to 279801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,196 DEBUG Processing 888/1139 atomic regions from SNP 266333 to 266933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,409 DEBUG Processing 932/1029 atomic regions from SNP 279501 to 280101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,502 DEBUG Processing 889/1139 atomic regions from SNP 266633 to 267233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,711 DEBUG Processing 933/1029 atomic regions from SNP 279801 to 280401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,809 DEBUG Processing 890/1139 atomic regions from SNP 266933 to 267533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,009 DEBUG Processing 934/1029 atomic regions from SNP 280101 to 280701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,112 DEBUG Processing 891/1139 atomic regions from SNP 267233 to 267833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,302 DEBUG Processing 935/1029 atomic regions from SNP 280401 to 281001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,415 DEBUG Processing 892/1139 atomic regions from SNP 267533 to 268133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,593 DEBUG Processing 936/1029 atomic regions from SNP 280701 to 281301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,714 DEBUG Processing 893/1139 atomic regions from SNP 267833 to 268433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,886 DEBUG Processing 937/1029 atomic regions from SNP 281001 to 281601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,037 DEBUG Processing 894/1139 atomic regions from SNP 268133 to 268733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,182 DEBUG Processing 938/1029 atomic regions from SNP 281301 to 281901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,373 DEBUG Processing 895/1139 atomic regions from SNP 268433 to 269033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,470 DEBUG Processing 939/1029 atomic regions from SNP 281601 to 282201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,702 DEBUG Processing 896/1139 atomic regions from SNP 268733 to 269333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,761 DEBUG Processing 940/1029 atomic regions from SNP 281901 to 282501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,021 DEBUG Processing 897/1139 atomic regions from SNP 269033 to 269633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,065 DEBUG Processing 941/1029 atomic regions from SNP 282201 to 282801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,347 DEBUG Processing 898/1139 atomic regions from SNP 269333 to 269933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,367 DEBUG Processing 942/1029 atomic regions from SNP 282501 to 283101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,667 DEBUG Processing 943/1029 atomic regions from SNP 282801 to 283401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,671 DEBUG Processing 899/1139 atomic regions from SNP 269633 to 270233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,965 DEBUG Processing 944/1029 atomic regions from SNP 283101 to 283701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,996 DEBUG Processing 900/1139 atomic regions from SNP 269933 to 270533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,266 DEBUG Processing 945/1029 atomic regions from SNP 283401 to 284001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,335 DEBUG Processing 901/1139 atomic regions from SNP 270233 to 270833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,564 DEBUG Processing 946/1029 atomic regions from SNP 283701 to 284301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,666 DEBUG Processing 902/1139 atomic regions from SNP 270533 to 271133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,858 DEBUG Processing 947/1029 atomic regions from SNP 284001 to 284601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,979 DEBUG Processing 903/1139 atomic regions from SNP 270833 to 271433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,149 DEBUG Processing 948/1029 atomic regions from SNP 284301 to 284901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,300 DEBUG Processing 904/1139 atomic regions from SNP 271133 to 271733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,439 DEBUG Processing 949/1029 atomic regions from SNP 284601 to 285201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,634 DEBUG Processing 905/1139 atomic regions from SNP 271433 to 272033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,730 DEBUG Processing 950/1029 atomic regions from SNP 284901 to 285501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,954 DEBUG Processing 906/1139 atomic regions from SNP 271733 to 272333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,023 DEBUG Processing 951/1029 atomic regions from SNP 285201 to 285801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,287 DEBUG Processing 907/1139 atomic regions from SNP 272033 to 272633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,317 DEBUG Processing 952/1029 atomic regions from SNP 285501 to 286101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,598 DEBUG Processing 908/1139 atomic regions from SNP 272333 to 272933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,613 DEBUG Processing 953/1029 atomic regions from SNP 285801 to 286401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,816 DEBUG Segmenting atomic regions: 2025-01-31 09:48:18,898 DEBUG Processing 909/1139 atomic regions from SNP 272633 to 273233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,906 DEBUG Processing 954/1029 atomic regions from SNP 286101 to 286701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,934 DEBUG Processing 1/860 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,206 DEBUG Processing 2/860 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,213 DEBUG Processing 910/1139 atomic regions from SNP 272933 to 273533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,223 DEBUG Processing 955/1029 atomic regions from SNP 286401 to 287001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,476 DEBUG Processing 3/860 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,528 DEBUG Processing 956/1029 atomic regions from SNP 286701 to 287301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,533 DEBUG Processing 911/1139 atomic regions from SNP 273233 to 273833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,747 DEBUG Processing 4/860 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,835 DEBUG Processing 912/1139 atomic regions from SNP 273533 to 274133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,839 DEBUG Processing 957/1029 atomic regions from SNP 287001 to 287601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,014 DEBUG Processing 5/860 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,141 DEBUG Processing 913/1139 atomic regions from SNP 273833 to 274433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,160 DEBUG Processing 958/1029 atomic regions from SNP 287301 to 287901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,283 DEBUG Processing 6/860 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,458 DEBUG Processing 914/1139 atomic regions from SNP 274133 to 274733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,483 DEBUG Processing 959/1029 atomic regions from SNP 287601 to 288201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,553 DEBUG Processing 7/860 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,779 DEBUG Processing 915/1139 atomic regions from SNP 274433 to 275033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,813 DEBUG Processing 960/1029 atomic regions from SNP 287901 to 288501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,827 DEBUG Processing 8/860 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,078 DEBUG Processing 916/1139 atomic regions from SNP 274733 to 275333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,092 DEBUG Processing 9/860 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,127 DEBUG Processing 961/1029 atomic regions from SNP 288201 to 288801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,360 DEBUG Processing 10/860 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,378 DEBUG Processing 917/1139 atomic regions from SNP 275033 to 275633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,433 DEBUG Processing 962/1029 atomic regions from SNP 288501 to 289101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,627 DEBUG Processing 11/860 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,683 DEBUG Processing 918/1139 atomic regions from SNP 275333 to 275933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,728 DEBUG Processing 963/1029 atomic regions from SNP 288801 to 289401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,892 DEBUG Processing 12/860 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,985 DEBUG Processing 919/1139 atomic regions from SNP 275633 to 276233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,035 DEBUG Processing 964/1029 atomic regions from SNP 289101 to 289701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,163 DEBUG Processing 13/860 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,286 DEBUG Processing 920/1139 atomic regions from SNP 275933 to 276533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,351 DEBUG Processing 965/1029 atomic regions from SNP 289401 to 290001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,440 DEBUG Processing 14/860 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,595 DEBUG Processing 921/1139 atomic regions from SNP 276233 to 276833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,681 DEBUG Processing 966/1029 atomic regions from SNP 289701 to 290301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,700 DEBUG Processing 15/860 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,892 DEBUG Processing 922/1139 atomic regions from SNP 276533 to 277133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,962 DEBUG Processing 16/860 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,012 DEBUG Processing 967/1029 atomic regions from SNP 290001 to 290601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,189 DEBUG Processing 923/1139 atomic regions from SNP 276833 to 277433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,231 DEBUG Processing 17/860 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,322 DEBUG Processing 968/1029 atomic regions from SNP 290301 to 290901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,488 DEBUG Processing 924/1139 atomic regions from SNP 277133 to 277733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,500 DEBUG Processing 18/860 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,635 DEBUG Processing 969/1029 atomic regions from SNP 290601 to 291201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,762 DEBUG Processing 19/860 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,796 DEBUG Processing 925/1139 atomic regions from SNP 277433 to 278033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,953 DEBUG Processing 970/1029 atomic regions from SNP 290901 to 291501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,033 DEBUG Processing 20/860 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,125 DEBUG Processing 926/1139 atomic regions from SNP 277733 to 278333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,263 DEBUG Processing 971/1029 atomic regions from SNP 291201 to 291801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,296 DEBUG Processing 21/860 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,431 DEBUG Processing 927/1139 atomic regions from SNP 278033 to 278633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,563 DEBUG Processing 22/860 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,575 DEBUG Processing 972/1029 atomic regions from SNP 291501 to 292101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,728 DEBUG Processing 928/1139 atomic regions from SNP 278333 to 278933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,834 DEBUG Processing 23/860 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,904 DEBUG Processing 973/1029 atomic regions from SNP 291801 to 292401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,023 DEBUG Processing 929/1139 atomic regions from SNP 278633 to 279233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,103 DEBUG Processing 24/860 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,231 DEBUG Processing 974/1029 atomic regions from SNP 292101 to 292701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,343 DEBUG Processing 930/1139 atomic regions from SNP 278933 to 279533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,366 DEBUG Processing 25/860 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,537 DEBUG Processing 975/1029 atomic regions from SNP 292401 to 293001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,627 DEBUG Processing 26/860 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,660 DEBUG Processing 931/1139 atomic regions from SNP 279233 to 279833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,837 DEBUG Processing 976/1029 atomic regions from SNP 292701 to 293301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,893 DEBUG Processing 27/860 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,994 DEBUG Processing 932/1139 atomic regions from SNP 279533 to 280133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,139 DEBUG Processing 977/1029 atomic regions from SNP 293001 to 293601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,168 DEBUG Processing 28/860 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,326 DEBUG Processing 933/1139 atomic regions from SNP 279833 to 280433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,442 DEBUG Processing 29/860 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,460 DEBUG Processing 978/1029 atomic regions from SNP 293301 to 293901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,632 DEBUG Processing 934/1139 atomic regions from SNP 280133 to 280733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,700 DEBUG Processing 30/860 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,767 DEBUG Processing 979/1029 atomic regions from SNP 293601 to 294201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,931 DEBUG Processing 935/1139 atomic regions from SNP 280433 to 281033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,966 DEBUG Processing 31/860 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,084 DEBUG Processing 980/1029 atomic regions from SNP 293901 to 294501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,233 DEBUG Processing 936/1139 atomic regions from SNP 280733 to 281333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,249 DEBUG Processing 32/860 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,405 DEBUG Processing 981/1029 atomic regions from SNP 294201 to 294801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,527 DEBUG Processing 33/860 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,554 DEBUG Processing 937/1139 atomic regions from SNP 281033 to 281633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,715 DEBUG Processing 982/1029 atomic regions from SNP 294501 to 295101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,795 DEBUG Processing 34/860 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,878 DEBUG Processing 938/1139 atomic regions from SNP 281333 to 281933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,034 DEBUG Processing 983/1029 atomic regions from SNP 294801 to 295401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,063 DEBUG Processing 35/860 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,183 DEBUG Processing 939/1139 atomic regions from SNP 281633 to 282233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,325 DEBUG Processing 36/860 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,373 DEBUG Processing 984/1029 atomic regions from SNP 295101 to 295701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,482 DEBUG Processing 940/1139 atomic regions from SNP 281933 to 282533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,588 DEBUG Processing 37/860 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,701 DEBUG Processing 985/1029 atomic regions from SNP 295401 to 296001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,805 DEBUG Processing 941/1139 atomic regions from SNP 282233 to 282833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,845 DEBUG Processing 38/860 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,018 DEBUG Processing 986/1029 atomic regions from SNP 295701 to 296301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,113 DEBUG Processing 39/860 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,129 DEBUG Processing 942/1139 atomic regions from SNP 282533 to 283133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,336 DEBUG Processing 987/1029 atomic regions from SNP 296001 to 296601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,372 DEBUG Processing 40/860 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,422 DEBUG Processing 943/1139 atomic regions from SNP 282833 to 283433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,631 DEBUG Processing 41/860 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,647 DEBUG Processing 988/1029 atomic regions from SNP 296301 to 296901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,720 DEBUG Processing 944/1139 atomic regions from SNP 283133 to 283733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,891 DEBUG Processing 42/860 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,938 DEBUG Processing 989/1029 atomic regions from SNP 296601 to 297201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,016 DEBUG Processing 945/1139 atomic regions from SNP 283433 to 284033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,150 DEBUG Processing 43/860 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,232 DEBUG Processing 990/1029 atomic regions from SNP 296901 to 297501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,314 DEBUG Processing 946/1139 atomic regions from SNP 283733 to 284333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,404 DEBUG Processing 44/860 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,526 DEBUG Processing 991/1029 atomic regions from SNP 297201 to 297801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,608 DEBUG Processing 947/1139 atomic regions from SNP 284033 to 284633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,660 DEBUG Processing 45/860 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,833 DEBUG Processing 992/1029 atomic regions from SNP 297501 to 298101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,912 DEBUG Processing 948/1139 atomic regions from SNP 284333 to 284933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,937 DEBUG Processing 46/860 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,127 DEBUG Processing 993/1029 atomic regions from SNP 297801 to 298401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,198 DEBUG Processing 47/860 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,219 DEBUG Processing 949/1139 atomic regions from SNP 284633 to 285233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,414 DEBUG Processing 994/1029 atomic regions from SNP 298101 to 298701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,457 DEBUG Processing 48/860 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,531 DEBUG Processing 950/1139 atomic regions from SNP 284933 to 285533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,702 DEBUG Processing 995/1029 atomic regions from SNP 298401 to 299001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,720 DEBUG Processing 49/860 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,843 DEBUG Processing 951/1139 atomic regions from SNP 285233 to 285833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,985 DEBUG Processing 50/860 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,996 DEBUG Processing 996/1029 atomic regions from SNP 298701 to 299301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,152 DEBUG Processing 952/1139 atomic regions from SNP 285533 to 286133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,244 DEBUG Processing 51/860 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,285 DEBUG Processing 997/1029 atomic regions from SNP 299001 to 299601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,450 DEBUG Processing 953/1139 atomic regions from SNP 285833 to 286433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,506 DEBUG Processing 52/860 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,577 DEBUG Processing 998/1029 atomic regions from SNP 299301 to 299901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,767 DEBUG Processing 954/1139 atomic regions from SNP 286133 to 286733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,789 DEBUG Processing 53/860 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,866 DEBUG Processing 999/1029 atomic regions from SNP 299601 to 300201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,060 DEBUG Processing 54/860 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,074 DEBUG Processing 955/1139 atomic regions from SNP 286433 to 287033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,185 DEBUG Processing 1000/1029 atomic regions from SNP 299901 to 300501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,322 DEBUG Processing 55/860 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,390 DEBUG Processing 956/1139 atomic regions from SNP 286733 to 287333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,506 DEBUG Processing 1001/1029 atomic regions from SNP 300201 to 300801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,580 DEBUG Processing 56/860 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,714 DEBUG Processing 957/1139 atomic regions from SNP 287033 to 287633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,802 DEBUG Processing 1002/1029 atomic regions from SNP 300501 to 301101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,841 DEBUG Processing 57/860 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,048 DEBUG Processing 958/1139 atomic regions from SNP 287333 to 287933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,104 DEBUG Processing 1003/1029 atomic regions from SNP 300801 to 301401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,116 DEBUG Processing 58/860 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,386 DEBUG Processing 959/1139 atomic regions from SNP 287633 to 288233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,386 DEBUG Processing 59/860 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,409 DEBUG Processing 1004/1029 atomic regions from SNP 301101 to 301701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,664 DEBUG Processing 60/860 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,724 DEBUG Processing 1005/1029 atomic regions from SNP 301401 to 302001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,738 DEBUG Processing 960/1139 atomic regions from SNP 287933 to 288533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,923 DEBUG Processing 61/860 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,022 DEBUG Processing 1006/1029 atomic regions from SNP 301701 to 302301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,080 DEBUG Processing 961/1139 atomic regions from SNP 288233 to 288833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,180 DEBUG Processing 62/860 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,322 DEBUG Processing 1007/1029 atomic regions from SNP 302001 to 302601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,414 DEBUG Processing 962/1139 atomic regions from SNP 288533 to 289133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,438 DEBUG Processing 63/860 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,610 DEBUG Processing 1008/1029 atomic regions from SNP 302301 to 302901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,705 DEBUG Processing 64/860 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,730 DEBUG Processing 963/1139 atomic regions from SNP 288833 to 289433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,895 DEBUG Processing 1009/1029 atomic regions from SNP 302601 to 303201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,975 DEBUG Processing 65/860 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,039 DEBUG Processing 964/1139 atomic regions from SNP 289133 to 289733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,183 DEBUG Processing 1010/1029 atomic regions from SNP 302901 to 303501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,241 DEBUG Processing 66/860 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,340 DEBUG Processing 965/1139 atomic regions from SNP 289433 to 290033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,480 DEBUG Processing 1011/1029 atomic regions from SNP 303201 to 303801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,527 DEBUG Processing 67/860 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,651 DEBUG Processing 966/1139 atomic regions from SNP 289733 to 290333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,776 DEBUG Processing 1012/1029 atomic regions from SNP 303501 to 304101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,795 DEBUG Processing 68/860 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,943 DEBUG Processing 967/1139 atomic regions from SNP 290033 to 290633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,054 DEBUG Processing 69/860 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,069 DEBUG Processing 1013/1029 atomic regions from SNP 303801 to 304401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,238 DEBUG Processing 968/1139 atomic regions from SNP 290333 to 290933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,312 DEBUG Processing 70/860 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,389 DEBUG Processing 1014/1029 atomic regions from SNP 304101 to 304701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,559 DEBUG Processing 969/1139 atomic regions from SNP 290633 to 291233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,565 DEBUG Processing 71/860 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,683 DEBUG Processing 1015/1029 atomic regions from SNP 304401 to 305001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,819 DEBUG Processing 72/860 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,887 DEBUG Processing 970/1139 atomic regions from SNP 290933 to 291533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,969 DEBUG Processing 1016/1029 atomic regions from SNP 304701 to 305301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,079 DEBUG Processing 73/860 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,198 DEBUG Processing 971/1139 atomic regions from SNP 291233 to 291833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,268 DEBUG Processing 1017/1029 atomic regions from SNP 305001 to 305601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,358 DEBUG Processing 74/860 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,506 DEBUG Processing 972/1139 atomic regions from SNP 291533 to 292133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,593 DEBUG Processing 1018/1029 atomic regions from SNP 305301 to 305901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,629 DEBUG Processing 75/860 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,820 DEBUG Processing 973/1139 atomic regions from SNP 291833 to 292433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,899 DEBUG Processing 1019/1029 atomic regions from SNP 305601 to 306201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,911 DEBUG Processing 76/860 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,110 DEBUG Processing 974/1139 atomic regions from SNP 292133 to 292733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,172 DEBUG Processing 77/860 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,190 DEBUG Processing 1020/1029 atomic regions from SNP 305901 to 306501 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,402 DEBUG Processing 975/1139 atomic regions from SNP 292433 to 293033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,434 DEBUG Processing 78/860 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,483 DEBUG Processing 1021/1029 atomic regions from SNP 306201 to 306801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,691 DEBUG Processing 79/860 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,697 DEBUG Processing 976/1139 atomic regions from SNP 292733 to 293333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,780 DEBUG Processing 1022/1029 atomic regions from SNP 306501 to 307101 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,956 DEBUG Processing 80/860 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,002 DEBUG Processing 977/1139 atomic regions from SNP 293033 to 293633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,077 DEBUG Processing 1023/1029 atomic regions from SNP 306801 to 307401 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,213 DEBUG Processing 81/860 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,298 DEBUG Processing 978/1139 atomic regions from SNP 293333 to 293933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,361 DEBUG Processing 1024/1029 atomic regions from SNP 307101 to 307701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,480 DEBUG Processing 82/860 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,599 DEBUG Processing 979/1139 atomic regions from SNP 293633 to 294233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,647 DEBUG Processing 1025/1029 atomic regions from SNP 307401 to 308001 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,742 DEBUG Processing 83/860 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,908 DEBUG Processing 980/1139 atomic regions from SNP 293933 to 294533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,959 DEBUG Processing 1026/1029 atomic regions from SNP 307701 to 308301 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,019 DEBUG Processing 84/860 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,210 DEBUG Processing 981/1139 atomic regions from SNP 294233 to 294833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,283 DEBUG Processing 1027/1029 atomic regions from SNP 308001 to 308601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,283 DEBUG Processing 85/860 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,507 DEBUG Processing 982/1139 atomic regions from SNP 294533 to 295133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,549 DEBUG Processing 86/860 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,596 DEBUG Processing 1028/1029 atomic regions from SNP 308301 to 308901 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,804 DEBUG Processing 983/1139 atomic regions from SNP 294833 to 295433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,810 DEBUG Processing 87/860 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,890 DEBUG Processing 1029/1029 atomic regions from SNP 308601 to 309201 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,055 DEBUG Unique SNPs positions in subchromosome 1: 309202 2025-01-31 09:48:42,075 DEBUG Processing 88/860 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,105 DEBUG Processing 984/1139 atomic regions from SNP 295133 to 295733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,339 DEBUG Processing 89/860 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,412 DEBUG Processing 985/1139 atomic regions from SNP 295433 to 296033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,605 DEBUG Processing 90/860 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,707 DEBUG Processing 986/1139 atomic regions from SNP 295733 to 296333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,857 DEBUG Processing 91/860 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,004 DEBUG Processing 987/1139 atomic regions from SNP 296033 to 296633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,104 DEBUG Processing 92/860 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,302 DEBUG Processing 988/1139 atomic regions from SNP 296333 to 296933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,353 DEBUG Processing 93/860 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,592 DEBUG Processing 989/1139 atomic regions from SNP 296633 to 297233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,608 DEBUG Processing 94/860 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,862 DEBUG Processing 95/860 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,881 DEBUG Processing 990/1139 atomic regions from SNP 296933 to 297533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,126 DEBUG Processing 96/860 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,203 DEBUG Processing 991/1139 atomic regions from SNP 297233 to 297833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,386 DEBUG Processing 97/860 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,544 DEBUG Processing 992/1139 atomic regions from SNP 297533 to 298133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,654 DEBUG Processing 98/860 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,883 DEBUG Processing 993/1139 atomic regions from SNP 297833 to 298433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,919 DEBUG Processing 99/860 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,177 DEBUG Processing 100/860 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,217 DEBUG Processing 994/1139 atomic regions from SNP 298133 to 298733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,433 DEBUG Processing 101/860 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,548 DEBUG Processing 995/1139 atomic regions from SNP 298433 to 299033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,686 DEBUG Processing 102/860 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,856 DEBUG Processing 996/1139 atomic regions from SNP 298733 to 299333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,933 DEBUG Processing 103/860 atomic regions from SNP 30702 to 31303 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,149 DEBUG Processing 997/1139 atomic regions from SNP 299033 to 299633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,179 DEBUG Processing 104/860 atomic regions from SNP 31003 to 31604 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,428 DEBUG Processing 105/860 atomic regions from SNP 31304 to 31905 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,437 DEBUG Processing 998/1139 atomic regions from SNP 299333 to 299933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,673 DEBUG Processing 106/860 atomic regions from SNP 31605 to 32206 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,743 DEBUG Processing 999/1139 atomic regions from SNP 299633 to 300233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,917 DEBUG Processing 107/860 atomic regions from SNP 31906 to 32507 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,062 DEBUG Processing 1000/1139 atomic regions from SNP 299933 to 300533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,155 DEBUG Processing 108/860 atomic regions from SNP 32207 to 32808 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,371 DEBUG Processing 1001/1139 atomic regions from SNP 300233 to 300833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,395 DEBUG Processing 109/860 atomic regions from SNP 32508 to 33109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,639 DEBUG Processing 110/860 atomic regions from SNP 32809 to 33410 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,652 DEBUG Processing 1002/1139 atomic regions from SNP 300533 to 301133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,888 DEBUG Processing 111/860 atomic regions from SNP 33110 to 33711 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,941 DEBUG Processing 1003/1139 atomic regions from SNP 300833 to 301433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,144 DEBUG Processing 112/860 atomic regions from SNP 33411 to 34012 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,243 DEBUG Processing 1004/1139 atomic regions from SNP 301133 to 301733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,401 DEBUG Processing 113/860 atomic regions from SNP 33712 to 34313 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,529 DEBUG Processing 1005/1139 atomic regions from SNP 301433 to 302033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,657 DEBUG Processing 114/860 atomic regions from SNP 34013 to 34614 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,811 DEBUG Processing 1006/1139 atomic regions from SNP 301733 to 302333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,906 DEBUG Processing 115/860 atomic regions from SNP 34314 to 34915 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,009 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:48:49,102 DEBUG Processing 1007/1139 atomic regions from SNP 302033 to 302633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,162 DEBUG Processing 116/860 atomic regions from SNP 34615 to 35216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,395 DEBUG Processing 1008/1139 atomic regions from SNP 302333 to 302933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,415 DEBUG Processing 117/860 atomic regions from SNP 34916 to 35517 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,678 DEBUG Processing 118/860 atomic regions from SNP 35217 to 35818 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,696 DEBUG Processing 1009/1139 atomic regions from SNP 302633 to 303233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,935 DEBUG Processing 119/860 atomic regions from SNP 35518 to 36119 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,997 DEBUG Processing 1010/1139 atomic regions from SNP 302933 to 303533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,201 DEBUG Processing 120/860 atomic regions from SNP 35819 to 36420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,300 DEBUG Processing 1011/1139 atomic regions from SNP 303233 to 303833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,467 DEBUG Processing 121/860 atomic regions from SNP 36120 to 36721 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,601 DEBUG Processing 1012/1139 atomic regions from SNP 303533 to 304133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,726 DEBUG Processing 122/860 atomic regions from SNP 36421 to 37022 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,890 DEBUG Processing 1013/1139 atomic regions from SNP 303833 to 304433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,971 DEBUG Processing 123/860 atomic regions from SNP 36722 to 37323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,172 DEBUG Processing 1014/1139 atomic regions from SNP 304133 to 304733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,213 DEBUG Processing 124/860 atomic regions from SNP 37023 to 37624 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,458 DEBUG Processing 1015/1139 atomic regions from SNP 304433 to 305033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,459 DEBUG Processing 125/860 atomic regions from SNP 37324 to 37925 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,717 DEBUG Processing 126/860 atomic regions from SNP 37625 to 38226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,752 DEBUG Processing 1016/1139 atomic regions from SNP 304733 to 305333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,974 DEBUG Processing 127/860 atomic regions from SNP 37926 to 38527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,049 DEBUG Processing 1017/1139 atomic regions from SNP 305033 to 305633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,233 DEBUG Processing 128/860 atomic regions from SNP 38227 to 38828 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,356 DEBUG Processing 1018/1139 atomic regions from SNP 305333 to 305933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,488 DEBUG Processing 129/860 atomic regions from SNP 38528 to 39129 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,651 DEBUG Processing 1019/1139 atomic regions from SNP 305633 to 306233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,730 DEBUG Processing 130/860 atomic regions from SNP 38829 to 39430 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,939 DEBUG Processing 1020/1139 atomic regions from SNP 305933 to 306533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,967 DEBUG Processing 131/860 atomic regions from SNP 39130 to 39731 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,209 DEBUG Processing 132/860 atomic regions from SNP 39431 to 40032 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,227 DEBUG Processing 1021/1139 atomic regions from SNP 306233 to 306833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,465 DEBUG Processing 133/860 atomic regions from SNP 39732 to 40333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,519 DEBUG Processing 1022/1139 atomic regions from SNP 306533 to 307133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,717 DEBUG Processing 134/860 atomic regions from SNP 40033 to 40634 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,807 DEBUG Processing 1023/1139 atomic regions from SNP 306833 to 307433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,967 DEBUG Processing 135/860 atomic regions from SNP 40334 to 40935 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,092 DEBUG Processing 1024/1139 atomic regions from SNP 307133 to 307733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,213 DEBUG Processing 136/860 atomic regions from SNP 40635 to 41236 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,380 DEBUG Processing 1025/1139 atomic regions from SNP 307433 to 308033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,451 DEBUG Processing 137/860 atomic regions from SNP 40936 to 41537 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,647 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:48:54,670 DEBUG Processing 1026/1139 atomic regions from SNP 307733 to 308333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,697 DEBUG Processing 138/860 atomic regions from SNP 41237 to 41838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,938 DEBUG Processing 139/860 atomic regions from SNP 41538 to 42139 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,968 DEBUG Processing 1027/1139 atomic regions from SNP 308033 to 308633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,186 DEBUG Processing 140/860 atomic regions from SNP 41839 to 42440 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,265 DEBUG Processing 1028/1139 atomic regions from SNP 308333 to 308933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,433 DEBUG Processing 141/860 atomic regions from SNP 42140 to 42741 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,551 DEBUG Processing 1029/1139 atomic regions from SNP 308633 to 309233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,677 DEBUG Processing 142/860 atomic regions from SNP 42441 to 43042 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,843 DEBUG Processing 1030/1139 atomic regions from SNP 308933 to 309533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,925 DEBUG Processing 143/860 atomic regions from SNP 42742 to 43343 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,138 DEBUG Processing 1031/1139 atomic regions from SNP 309233 to 309833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,171 DEBUG Processing 144/860 atomic regions from SNP 43043 to 43644 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,427 DEBUG Processing 1032/1139 atomic regions from SNP 309533 to 310133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,427 DEBUG Processing 145/860 atomic regions from SNP 43344 to 43945 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,704 DEBUG Processing 146/860 atomic regions from SNP 43645 to 44246 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,715 DEBUG Processing 1033/1139 atomic regions from SNP 309833 to 310433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,962 DEBUG Processing 147/860 atomic regions from SNP 43946 to 44547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,008 DEBUG Processing 1034/1139 atomic regions from SNP 310133 to 310733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,222 DEBUG Processing 148/860 atomic regions from SNP 44247 to 44848 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,323 DEBUG Processing 1035/1139 atomic regions from SNP 310433 to 311033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,484 DEBUG Processing 149/860 atomic regions from SNP 44548 to 45149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,636 DEBUG Processing 1036/1139 atomic regions from SNP 310733 to 311333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,744 DEBUG Processing 150/860 atomic regions from SNP 44849 to 45450 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,939 DEBUG Processing 1037/1139 atomic regions from SNP 311033 to 311633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,020 DEBUG Processing 151/860 atomic regions from SNP 45150 to 45751 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,223 DEBUG Processing 1038/1139 atomic regions from SNP 311333 to 311933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,282 DEBUG Processing 152/860 atomic regions from SNP 45451 to 46052 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,509 DEBUG Processing 1039/1139 atomic regions from SNP 311633 to 312233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,551 DEBUG Processing 153/860 atomic regions from SNP 45752 to 46353 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,807 DEBUG Processing 1040/1139 atomic regions from SNP 311933 to 312533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,838 DEBUG Processing 154/860 atomic regions from SNP 46053 to 46654 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,108 DEBUG Processing 1041/1139 atomic regions from SNP 312233 to 312833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,118 DEBUG Processing 155/860 atomic regions from SNP 46354 to 46955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,388 DEBUG Processing 156/860 atomic regions from SNP 46655 to 47256 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,400 DEBUG Processing 1042/1139 atomic regions from SNP 312533 to 313133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,677 DEBUG Processing 157/860 atomic regions from SNP 46956 to 47557 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,719 DEBUG Processing 1043/1139 atomic regions from SNP 312833 to 313433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,977 DEBUG Processing 158/860 atomic regions from SNP 47257 to 47858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,043 DEBUG Processing 1044/1139 atomic regions from SNP 313133 to 313733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,253 DEBUG Processing 159/860 atomic regions from SNP 47558 to 48159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,369 DEBUG Processing 1045/1139 atomic regions from SNP 313433 to 314033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,510 DEBUG Processing 160/860 atomic regions from SNP 47859 to 48460 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,665 DEBUG Processing 1046/1139 atomic regions from SNP 313733 to 314333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,746 DEBUG Processing 161/860 atomic regions from SNP 48160 to 48761 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,973 DEBUG Processing 1047/1139 atomic regions from SNP 314033 to 314633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,020 DEBUG Processing 162/860 atomic regions from SNP 48461 to 49062 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,307 DEBUG Processing 1048/1139 atomic regions from SNP 314333 to 314933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,310 DEBUG Processing 163/860 atomic regions from SNP 48762 to 49363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,583 DEBUG Processing 164/860 atomic regions from SNP 49063 to 49664 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,646 DEBUG Processing 1049/1139 atomic regions from SNP 314633 to 315233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,857 DEBUG Processing 165/860 atomic regions from SNP 49364 to 49965 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,978 DEBUG Processing 1050/1139 atomic regions from SNP 314933 to 315533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,133 DEBUG Processing 166/860 atomic regions from SNP 49665 to 50266 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,317 DEBUG Processing 1051/1139 atomic regions from SNP 315233 to 315833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,386 DEBUG Processing 167/860 atomic regions from SNP 49966 to 50567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,646 DEBUG Processing 168/860 atomic regions from SNP 50267 to 50868 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,657 DEBUG Processing 1052/1139 atomic regions from SNP 315533 to 316133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,894 DEBUG Processing 169/860 atomic regions from SNP 50568 to 51169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,978 DEBUG Processing 1053/1139 atomic regions from SNP 315833 to 316433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,131 DEBUG Processing 170/860 atomic regions from SNP 50869 to 51470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,298 DEBUG Processing 1054/1139 atomic regions from SNP 316133 to 316733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,377 DEBUG Processing 171/860 atomic regions from SNP 51170 to 51771 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,619 DEBUG Processing 1055/1139 atomic regions from SNP 316433 to 317033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,622 DEBUG Processing 172/860 atomic regions from SNP 51471 to 52072 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,864 DEBUG Processing 173/860 atomic regions from SNP 51772 to 52373 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,907 DEBUG Processing 1056/1139 atomic regions from SNP 316733 to 317333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,108 DEBUG Processing 174/860 atomic regions from SNP 52073 to 52674 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,199 DEBUG Processing 1057/1139 atomic regions from SNP 317033 to 317633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,351 DEBUG Processing 175/860 atomic regions from SNP 52374 to 52975 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,493 DEBUG Processing 1058/1139 atomic regions from SNP 317333 to 317933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,592 DEBUG Processing 176/860 atomic regions from SNP 52675 to 53276 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,775 DEBUG Processing 1059/1139 atomic regions from SNP 317633 to 318233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,821 DEBUG Processing 177/860 atomic regions from SNP 52976 to 53577 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,053 DEBUG Processing 178/860 atomic regions from SNP 53277 to 53878 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,066 DEBUG Processing 1060/1139 atomic regions from SNP 317933 to 318533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,294 DEBUG Processing 179/860 atomic regions from SNP 53578 to 54179 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,362 DEBUG Processing 1061/1139 atomic regions from SNP 318233 to 318833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,544 DEBUG Processing 180/860 atomic regions from SNP 53879 to 54480 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,651 DEBUG Processing 1062/1139 atomic regions from SNP 318533 to 319133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,780 DEBUG Processing 181/860 atomic regions from SNP 54180 to 54781 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,931 DEBUG Processing 1063/1139 atomic regions from SNP 318833 to 319433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,022 DEBUG Processing 182/860 atomic regions from SNP 54481 to 55082 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,212 DEBUG Processing 1064/1139 atomic regions from SNP 319133 to 319733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,279 DEBUG Processing 183/860 atomic regions from SNP 54782 to 55383 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,497 DEBUG Processing 1065/1139 atomic regions from SNP 319433 to 320033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,520 DEBUG Processing 184/860 atomic regions from SNP 55083 to 55684 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,775 DEBUG Processing 185/860 atomic regions from SNP 55384 to 55985 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,790 DEBUG Processing 1066/1139 atomic regions from SNP 319733 to 320333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,039 DEBUG Processing 186/860 atomic regions from SNP 55685 to 56286 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,099 DEBUG Processing 1067/1139 atomic regions from SNP 320033 to 320633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,304 DEBUG Processing 187/860 atomic regions from SNP 55986 to 56587 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,389 DEBUG Processing 1068/1139 atomic regions from SNP 320333 to 320933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,576 DEBUG Processing 188/860 atomic regions from SNP 56287 to 56888 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,679 DEBUG Processing 1069/1139 atomic regions from SNP 320633 to 321233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,828 DEBUG Processing 189/860 atomic regions from SNP 56588 to 57189 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,971 DEBUG Processing 1070/1139 atomic regions from SNP 320933 to 321533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,073 DEBUG Processing 190/860 atomic regions from SNP 56889 to 57490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,260 DEBUG Processing 1071/1139 atomic regions from SNP 321233 to 321833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,322 DEBUG Processing 191/860 atomic regions from SNP 57190 to 57791 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,556 DEBUG Processing 1072/1139 atomic regions from SNP 321533 to 322133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,583 DEBUG Processing 192/860 atomic regions from SNP 57491 to 58092 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,838 DEBUG Processing 193/860 atomic regions from SNP 57792 to 58393 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,851 DEBUG Processing 1073/1139 atomic regions from SNP 321833 to 322433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,085 DEBUG Processing 194/860 atomic regions from SNP 58093 to 58694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,146 DEBUG Processing 1074/1139 atomic regions from SNP 322133 to 322733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,336 DEBUG Processing 195/860 atomic regions from SNP 58394 to 58995 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,472 DEBUG Processing 1075/1139 atomic regions from SNP 322433 to 323033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,594 DEBUG Processing 196/860 atomic regions from SNP 58695 to 59296 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,799 DEBUG Processing 1076/1139 atomic regions from SNP 322733 to 323333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,851 DEBUG Processing 197/860 atomic regions from SNP 58996 to 59597 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,113 DEBUG Processing 198/860 atomic regions from SNP 59297 to 59898 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,121 DEBUG Processing 1077/1139 atomic regions from SNP 323033 to 323633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,393 DEBUG Processing 199/860 atomic regions from SNP 59598 to 60199 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,454 DEBUG Processing 1078/1139 atomic regions from SNP 323333 to 323933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,509 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:49:10,511 DEBUG chr10: Signal quantile: 0.993. signal threshold: 16. Best RMSEA: 0.020 2025-01-31 09:49:10,656 DEBUG Processing 200/860 atomic regions from SNP 59899 to 60500 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,789 DEBUG Processing 1079/1139 atomic regions from SNP 323633 to 324233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,905 DEBUG Processing 201/860 atomic regions from SNP 60200 to 60801 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,113 DEBUG Processing 1080/1139 atomic regions from SNP 323933 to 324533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,155 DEBUG Processing 202/860 atomic regions from SNP 60501 to 61102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,397 DEBUG Processing 1081/1139 atomic regions from SNP 324233 to 324833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,417 DEBUG Processing 203/860 atomic regions from SNP 60802 to 61403 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,484 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:49:11,486 DEBUG chr7: Signal quantile: 0.990. signal threshold: 17. Best RMSEA: 0.016 2025-01-31 09:49:11,686 DEBUG Processing 1082/1139 atomic regions from SNP 324533 to 325133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,694 DEBUG Processing 204/860 atomic regions from SNP 61103 to 61704 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,956 DEBUG Processing 205/860 atomic regions from SNP 61404 to 62005 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,989 DEBUG Processing 1083/1139 atomic regions from SNP 324833 to 325433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,233 DEBUG Subchromosome time: 359.66905799892265, subchromosome SNPs: 309202 2025-01-31 09:49:12,236 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:12,243 DEBUG Processing 206/860 atomic regions from SNP 61705 to 62306 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,290 DEBUG Processing 1084/1139 atomic regions from SNP 325133 to 325733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,523 DEBUG Processing 207/860 atomic regions from SNP 62006 to 62607 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,568 DEBUG Processing 1085/1139 atomic regions from SNP 325433 to 326033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,791 DEBUG Processing 208/860 atomic regions from SNP 62307 to 62908 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,845 DEBUG Processing 1086/1139 atomic regions from SNP 325733 to 326333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,968 DEBUG chr10 total SNP count: 226377 2025-01-31 09:49:12,968 DEBUG chr10 length: 130694993 2025-01-31 09:49:12,968 DEBUG ----------------------------------------- 2025-01-31 09:49:12,968 INFO Processing SNPs in chr10 2025-01-31 09:49:13,062 DEBUG Processing 209/860 atomic regions from SNP 62608 to 63209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,133 DEBUG Processing 1087/1139 atomic regions from SNP 326033 to 326633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,197 DEBUG Segmenting atomic regions: 2025-01-31 09:49:13,200 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 226377)] 2025-01-31 09:49:13,339 DEBUG Processing 1/25 atomic regions from SNP 0 to 604 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:13,345 DEBUG Processing 210/860 atomic regions from SNP 62909 to 63509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,358 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:13,417 DEBUG Processing 1088/1139 atomic regions from SNP 326333 to 326933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,612 DEBUG Processing 211/860 atomic regions from SNP 63209 to 63809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,613 DEBUG Processing 2/25 atomic regions from SNP 304 to 908 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:13,700 DEBUG Processing 1089/1139 atomic regions from SNP 326633 to 327233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,870 DEBUG Processing 212/860 atomic regions from SNP 63509 to 64109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,884 DEBUG Processing 3/25 atomic regions from SNP 608 to 1212 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:13,981 DEBUG Processing 1090/1139 atomic regions from SNP 326933 to 327533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,129 DEBUG Processing 213/860 atomic regions from SNP 63809 to 64409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,174 DEBUG Processing 4/25 atomic regions from SNP 912 to 1516 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:14,179 DEBUG chr7 total SNP count: 234211 2025-01-31 09:49:14,179 DEBUG chr7 length: 145441459 2025-01-31 09:49:14,179 DEBUG ----------------------------------------- 2025-01-31 09:49:14,179 INFO Processing SNPs in chr7 2025-01-31 09:49:14,264 DEBUG Processing 1091/1139 atomic regions from SNP 327233 to 327833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,383 DEBUG Processing 214/860 atomic regions from SNP 64109 to 64709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,449 DEBUG Processing 5/25 atomic regions from SNP 1216 to 1820 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:14,541 DEBUG Processing 1092/1139 atomic regions from SNP 327533 to 328133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,558 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 21078), (21078, 21104), (21104, 234211)] 2025-01-31 09:49:14,618 DEBUG Processing 215/860 atomic regions from SNP 64409 to 65009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,669 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:14,734 DEBUG Processing 6/25 atomic regions from SNP 1520 to 2124 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:14,826 DEBUG Processing 1093/1139 atomic regions from SNP 327833 to 328433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,854 DEBUG Processing 216/860 atomic regions from SNP 64709 to 65309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,001 DEBUG Processing 7/25 atomic regions from SNP 1824 to 2428 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:15,092 DEBUG Processing 217/860 atomic regions from SNP 65009 to 65609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,105 DEBUG Processing 1094/1139 atomic regions from SNP 328133 to 328733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,261 DEBUG Processing 8/25 atomic regions from SNP 2128 to 2732 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:15,329 DEBUG Processing 218/860 atomic regions from SNP 65309 to 65909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,383 DEBUG Processing 1095/1139 atomic regions from SNP 328433 to 329033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,520 DEBUG Processing 9/25 atomic regions from SNP 2432 to 3036 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:15,577 DEBUG Processing 219/860 atomic regions from SNP 65609 to 66209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,678 DEBUG Processing 1096/1139 atomic regions from SNP 328733 to 329333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,789 DEBUG Processing 10/25 atomic regions from SNP 2736 to 3340 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:15,820 DEBUG Processing 220/860 atomic regions from SNP 65909 to 66509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,966 DEBUG Processing 1097/1139 atomic regions from SNP 329033 to 329633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,058 DEBUG Processing 11/25 atomic regions from SNP 3040 to 3644 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:16,059 DEBUG Processing 221/860 atomic regions from SNP 66209 to 66809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,097 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:49:16,251 DEBUG Processing 1098/1139 atomic regions from SNP 329333 to 329933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,304 DEBUG Processing 222/860 atomic regions from SNP 66509 to 67109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,336 DEBUG Processing 12/25 atomic regions from SNP 3344 to 3948 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:16,536 DEBUG Processing 1099/1139 atomic regions from SNP 329633 to 330233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,555 DEBUG Processing 223/860 atomic regions from SNP 66809 to 67409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,637 DEBUG Processing 13/25 atomic regions from SNP 3648 to 4252 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:16,800 DEBUG Processing 224/860 atomic regions from SNP 67109 to 67709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,819 DEBUG Processing 1100/1139 atomic regions from SNP 329933 to 330533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,945 DEBUG Processing 14/25 atomic regions from SNP 3952 to 4555 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:17,038 DEBUG Processing 225/860 atomic regions from SNP 67409 to 68009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,103 DEBUG Processing 1101/1139 atomic regions from SNP 330233 to 330833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,256 DEBUG Processing 15/25 atomic regions from SNP 4255 to 4858 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:17,282 DEBUG Processing 226/860 atomic regions from SNP 67709 to 68309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,298 DEBUG Segmenting atomic regions: 2025-01-31 09:49:17,390 DEBUG Processing 1102/1139 atomic regions from SNP 330533 to 331133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,405 DEBUG Processing 1/69 atomic regions from SNP 0 to 602 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:17,529 DEBUG Processing 227/860 atomic regions from SNP 68009 to 68609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,564 DEBUG Processing 16/25 atomic regions from SNP 4558 to 5161 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:17,646 DEBUG Processing 2/69 atomic regions from SNP 302 to 904 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:17,689 DEBUG Processing 1103/1139 atomic regions from SNP 330833 to 331433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,777 DEBUG Processing 228/860 atomic regions from SNP 68309 to 68909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,872 DEBUG Processing 17/25 atomic regions from SNP 4861 to 5464 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:17,881 DEBUG Processing 3/69 atomic regions from SNP 604 to 1206 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:17,978 DEBUG Processing 1104/1139 atomic regions from SNP 331133 to 331733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,017 DEBUG Processing 229/860 atomic regions from SNP 68609 to 69209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,149 DEBUG Processing 4/69 atomic regions from SNP 906 to 1508 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:18,179 DEBUG Processing 18/25 atomic regions from SNP 5164 to 5767 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:18,256 DEBUG Processing 230/860 atomic regions from SNP 68909 to 69509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,259 DEBUG Processing 1105/1139 atomic regions from SNP 331433 to 332033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,405 DEBUG Processing 5/69 atomic regions from SNP 1208 to 1810 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:18,489 DEBUG Processing 19/25 atomic regions from SNP 5467 to 6070 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:18,495 DEBUG Processing 231/860 atomic regions from SNP 69209 to 69809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,560 DEBUG Processing 1106/1139 atomic regions from SNP 331733 to 332333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,660 DEBUG Processing 6/69 atomic regions from SNP 1510 to 2112 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:18,741 DEBUG Processing 232/860 atomic regions from SNP 69509 to 70109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,788 DEBUG Processing 20/25 atomic regions from SNP 5770 to 6373 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:18,870 DEBUG Processing 1107/1139 atomic regions from SNP 332033 to 332633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,905 DEBUG Processing 7/69 atomic regions from SNP 1812 to 2414 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:18,986 DEBUG Processing 233/860 atomic regions from SNP 69809 to 70409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,089 DEBUG Processing 21/25 atomic regions from SNP 6073 to 6676 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:19,169 DEBUG Processing 1108/1139 atomic regions from SNP 332333 to 332933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,173 DEBUG Processing 8/69 atomic regions from SNP 2114 to 2716 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,229 DEBUG Processing 234/860 atomic regions from SNP 70109 to 70709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,391 DEBUG Processing 22/25 atomic regions from SNP 6376 to 6979 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:19,445 DEBUG Processing 9/69 atomic regions from SNP 2416 to 3017 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,459 DEBUG Processing 1109/1139 atomic regions from SNP 332633 to 333233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,478 DEBUG Processing 235/860 atomic regions from SNP 70409 to 71009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,700 DEBUG Processing 23/25 atomic regions from SNP 6679 to 7282 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:19,713 DEBUG Processing 10/69 atomic regions from SNP 2717 to 3318 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,726 DEBUG Processing 236/860 atomic regions from SNP 70709 to 71309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,747 DEBUG Processing 1110/1139 atomic regions from SNP 332933 to 333533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,977 DEBUG Processing 237/860 atomic regions from SNP 71009 to 71609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,986 DEBUG Processing 11/69 atomic regions from SNP 3018 to 3619 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,019 DEBUG Processing 24/25 atomic regions from SNP 6982 to 7585 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:20,040 DEBUG Processing 1111/1139 atomic regions from SNP 333233 to 333833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,222 DEBUG Processing 238/860 atomic regions from SNP 71309 to 71909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,227 DEBUG Processing 12/69 atomic regions from SNP 3319 to 3920 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,333 DEBUG Processing 1112/1139 atomic regions from SNP 333533 to 334133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,334 DEBUG Processing 25/25 atomic regions from SNP 7285 to 7888 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:20,451 DEBUG Processing 13/69 atomic regions from SNP 3620 to 4221 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,458 DEBUG Processing 239/860 atomic regions from SNP 71609 to 72209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,491 DEBUG Unique SNPs positions in subchromosome 2: 7889 2025-01-31 09:49:20,501 DEBUG Subchromosome time: 8.264619934023358, subchromosome SNPs: 7889 2025-01-31 09:49:20,501 DEBUG Estimated BADs: [2.27, 1.13, 22.66, 2.27, 6.80, 4.53, 0.76, 2.27, 0.57, 1.13, 0.57, 2.27, 0.76, 2.27, 4.53, 2.27, 1.13, 9.07, 0.45, 2.27, 4.53, 0.38, 2.27, 1.13, 4.53, 0.45, 2.27, 4.53, 13.60, 2.27, 1.13, 2.27, 1.13, 4.53, 2.27, 6.80, 2.27, 4.53, 2.27, 9.07] SNP counts: [8222, 18357, 104, 11827, 14866, 6747, 1063, 4935, 7415, 16862, 6304, 10147, 8943, 3771, 11181, 9645, 6042, 1191, 6863, 2127, 7772, 8919, 13269, 18834, 8179, 1216, 6353, 7242, 425, 12073, 10735, 9369, 3317, 13785, 9002, 8698, 8122, 5280, 3756, 4133] SNP IDs counts: [8222, 18357, 104, 11827, 14866, 6747, 1063, 4935, 7415, 16862, 6304, 10147, 8943, 3771, 11181, 9645, 6042, 1191, 6863, 2127, 7772, 8919, 13269, 18834, 8179, 1216, 6353, 7242, 425, 12073, 10735, 9369, 3317, 13785, 9002, 8698, 8122, 5280, 3756, 4133] Critical gap: 724086bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.53Mbp, 18.02Mbp, 18.08Mbp, 24.92Mbp, 32.76Mbp, 36.28Mbp, 36.95Mbp, 39.70Mbp, 43.93Mbp, 53.24Mbp, 57.11Mbp, 62.69Mbp, 67.73Mbp, 69.80Mbp, 75.71Mbp, 80.97Mbp, 84.65Mbp, 85.29Mbp, 89.48Mbp, 90.92Mbp, 95.04Mbp, 100.61Mbp, 107.99Mbp, 118.64Mbp, 123.04Mbp, 123.75Mbp, 127.21Mbp, 131.04Mbp, 131.26Mbp, 137.87Mbp, 143.87Mbp, 148.94Mbp, 150.90Mbp, 158.51Mbp, 163.35Mbp, 167.96Mbp, 172.25Mbp, 175.18Mbp[1.52Mbp], 179.81Mbp, 182.11Mbp] 2025-01-31 09:49:20,501 DEBUG chr2 time: 8.265168401994742 s 2025-01-31 09:49:20,640 DEBUG Processing 1113/1139 atomic regions from SNP 333833 to 334433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,682 DEBUG Processing 14/69 atomic regions from SNP 3921 to 4522 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,694 DEBUG chr2: Fitting background model for 40 segments 2025-01-31 09:49:20,704 DEBUG Processing 240/860 atomic regions from SNP 71909 to 72509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,927 DEBUG Processing 15/69 atomic regions from SNP 4222 to 4823 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,961 DEBUG Processing 241/860 atomic regions from SNP 72209 to 72809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,966 DEBUG Processing 1114/1139 atomic regions from SNP 334133 to 334733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,180 DEBUG Processing 16/69 atomic regions from SNP 4523 to 5124 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,215 DEBUG Processing 242/860 atomic regions from SNP 72509 to 73109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,291 DEBUG Processing 1115/1139 atomic regions from SNP 334433 to 335033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,440 DEBUG Processing 17/69 atomic regions from SNP 4824 to 5425 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,467 DEBUG Processing 243/860 atomic regions from SNP 72809 to 73409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,613 DEBUG Processing 1116/1139 atomic regions from SNP 334733 to 335333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,695 DEBUG Processing 18/69 atomic regions from SNP 5125 to 5726 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,716 DEBUG Processing 244/860 atomic regions from SNP 73109 to 73709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,934 DEBUG Processing 19/69 atomic regions from SNP 5426 to 6027 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,935 DEBUG Processing 1117/1139 atomic regions from SNP 335033 to 335633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,967 DEBUG Processing 245/860 atomic regions from SNP 73409 to 74009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,190 DEBUG Processing 20/69 atomic regions from SNP 5727 to 6328 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,226 DEBUG Processing 246/860 atomic regions from SNP 73709 to 74309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,244 DEBUG Processing 1118/1139 atomic regions from SNP 335333 to 335933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,423 DEBUG Processing 21/69 atomic regions from SNP 6028 to 6629 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,474 DEBUG Processing 247/860 atomic regions from SNP 74009 to 74609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,555 DEBUG Processing 1119/1139 atomic regions from SNP 335633 to 336233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,651 DEBUG Processing 22/69 atomic regions from SNP 6329 to 6930 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,722 DEBUG Processing 248/860 atomic regions from SNP 74309 to 74909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,881 DEBUG Processing 23/69 atomic regions from SNP 6630 to 7231 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,882 DEBUG Processing 1120/1139 atomic regions from SNP 335933 to 336533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,971 DEBUG Processing 249/860 atomic regions from SNP 74609 to 75209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,113 DEBUG Processing 24/69 atomic regions from SNP 6931 to 7532 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,206 DEBUG Processing 1121/1139 atomic regions from SNP 336233 to 336833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,221 DEBUG Processing 250/860 atomic regions from SNP 74909 to 75509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,336 DEBUG Processing 25/69 atomic regions from SNP 7232 to 7833 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,473 DEBUG Processing 251/860 atomic regions from SNP 75209 to 75809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,515 DEBUG Processing 1122/1139 atomic regions from SNP 336533 to 337133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,565 DEBUG Processing 26/69 atomic regions from SNP 7533 to 8134 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,725 DEBUG Processing 252/860 atomic regions from SNP 75509 to 76109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,794 DEBUG Processing 27/69 atomic regions from SNP 7834 to 8435 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,809 DEBUG Processing 1123/1139 atomic regions from SNP 336833 to 337433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,984 DEBUG Processing 253/860 atomic regions from SNP 75809 to 76409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,034 DEBUG Processing 28/69 atomic regions from SNP 8135 to 8736 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,113 DEBUG Processing 1124/1139 atomic regions from SNP 337133 to 337733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,231 DEBUG Processing 254/860 atomic regions from SNP 76109 to 76709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,267 DEBUG Processing 29/69 atomic regions from SNP 8436 to 9037 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,398 DEBUG Processing 1125/1139 atomic regions from SNP 337433 to 338033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,477 DEBUG Processing 255/860 atomic regions from SNP 76409 to 77009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,508 DEBUG Processing 30/69 atomic regions from SNP 8737 to 9338 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,684 DEBUG Processing 1126/1139 atomic regions from SNP 337733 to 338333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,725 DEBUG Processing 256/860 atomic regions from SNP 76709 to 77309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,736 DEBUG Processing 31/69 atomic regions from SNP 9038 to 9639 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,968 DEBUG Processing 32/69 atomic regions from SNP 9339 to 9940 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,973 DEBUG Processing 257/860 atomic regions from SNP 77009 to 77609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,994 DEBUG Processing 1127/1139 atomic regions from SNP 338033 to 338633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,200 DEBUG Processing 33/69 atomic regions from SNP 9640 to 10241 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:25,248 DEBUG Processing 258/860 atomic regions from SNP 77309 to 77909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,296 DEBUG Processing 1128/1139 atomic regions from SNP 338333 to 338933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,425 DEBUG Processing 34/69 atomic regions from SNP 9941 to 10542 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:25,500 DEBUG Processing 259/860 atomic regions from SNP 77609 to 78209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,588 DEBUG Processing 1129/1139 atomic regions from SNP 338633 to 339233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,652 DEBUG Processing 35/69 atomic regions from SNP 10242 to 10843 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:25,772 DEBUG Processing 260/860 atomic regions from SNP 77909 to 78509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,891 DEBUG Processing 1130/1139 atomic regions from SNP 338933 to 339533 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,906 DEBUG Processing 36/69 atomic regions from SNP 10543 to 11144 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:26,050 DEBUG Processing 261/860 atomic regions from SNP 78209 to 78809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,163 DEBUG Processing 37/69 atomic regions from SNP 10844 to 11445 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:26,195 DEBUG Processing 1131/1139 atomic regions from SNP 339233 to 339833 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,326 DEBUG Processing 262/860 atomic regions from SNP 78509 to 79109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,390 DEBUG Processing 38/69 atomic regions from SNP 11145 to 11746 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:26,478 DEBUG Processing 1132/1139 atomic regions from SNP 339533 to 340133 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,579 DEBUG Processing 263/860 atomic regions from SNP 78809 to 79409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,622 DEBUG Processing 39/69 atomic regions from SNP 11446 to 12047 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:26,761 DEBUG Processing 1133/1139 atomic regions from SNP 339833 to 340433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,830 DEBUG Processing 264/860 atomic regions from SNP 79109 to 79709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,854 DEBUG Processing 40/69 atomic regions from SNP 11747 to 12348 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:27,050 DEBUG Processing 1134/1139 atomic regions from SNP 340133 to 340733 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,090 DEBUG Processing 265/860 atomic regions from SNP 79409 to 80009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,097 DEBUG Processing 41/69 atomic regions from SNP 12048 to 12649 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:27,334 DEBUG Processing 42/69 atomic regions from SNP 12349 to 12950 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:27,339 DEBUG Processing 1135/1139 atomic regions from SNP 340433 to 341033 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,344 DEBUG Processing 266/860 atomic regions from SNP 79709 to 80309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,571 DEBUG Processing 43/69 atomic regions from SNP 12650 to 13251 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:27,598 DEBUG Processing 267/860 atomic regions from SNP 80009 to 80609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,639 DEBUG Processing 1136/1139 atomic regions from SNP 340733 to 341333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,801 DEBUG Processing 44/69 atomic regions from SNP 12951 to 13552 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:27,850 DEBUG Processing 268/860 atomic regions from SNP 80309 to 80909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,948 DEBUG Processing 1137/1139 atomic regions from SNP 341033 to 341633 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,037 DEBUG Processing 45/69 atomic regions from SNP 13252 to 13853 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:28,133 DEBUG Processing 269/860 atomic regions from SNP 80609 to 81209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,239 DEBUG Processing 1138/1139 atomic regions from SNP 341333 to 341933 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,268 DEBUG Processing 46/69 atomic regions from SNP 13553 to 14154 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:28,419 DEBUG Processing 270/860 atomic regions from SNP 80909 to 81509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,499 DEBUG Processing 47/69 atomic regions from SNP 13854 to 14455 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:28,545 DEBUG Processing 1139/1139 atomic regions from SNP 341633 to 342233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,683 DEBUG Processing 271/860 atomic regions from SNP 81209 to 81809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,688 DEBUG Unique SNPs positions in subchromosome 1: 342234 2025-01-31 09:49:28,752 DEBUG Processing 48/69 atomic regions from SNP 14155 to 14756 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:28,946 DEBUG Processing 272/860 atomic regions from SNP 81509 to 82109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,019 DEBUG Processing 49/69 atomic regions from SNP 14456 to 15057 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:29,203 DEBUG Processing 273/860 atomic regions from SNP 81809 to 82409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,283 DEBUG Processing 50/69 atomic regions from SNP 14757 to 15358 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:29,456 DEBUG Processing 274/860 atomic regions from SNP 82109 to 82709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,549 DEBUG Processing 51/69 atomic regions from SNP 15058 to 15659 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:29,706 DEBUG Processing 275/860 atomic regions from SNP 82409 to 83009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,804 DEBUG Processing 52/69 atomic regions from SNP 15359 to 15960 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:29,951 DEBUG Processing 276/860 atomic regions from SNP 82709 to 83309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,040 DEBUG Processing 53/69 atomic regions from SNP 15660 to 16261 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:30,202 DEBUG Processing 277/860 atomic regions from SNP 83009 to 83609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,287 DEBUG Processing 54/69 atomic regions from SNP 15961 to 16562 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:30,452 DEBUG Processing 278/860 atomic regions from SNP 83309 to 83909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,538 DEBUG Processing 55/69 atomic regions from SNP 16262 to 16863 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:30,712 DEBUG Processing 279/860 atomic regions from SNP 83609 to 84209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,771 DEBUG Processing 56/69 atomic regions from SNP 16563 to 17164 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:30,973 DEBUG Processing 280/860 atomic regions from SNP 83909 to 84509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,010 DEBUG Processing 57/69 atomic regions from SNP 16864 to 17465 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:31,228 DEBUG Processing 281/860 atomic regions from SNP 84209 to 84809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,247 DEBUG Processing 58/69 atomic regions from SNP 17165 to 17766 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:31,476 DEBUG Processing 282/860 atomic regions from SNP 84509 to 85109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,483 DEBUG Processing 59/69 atomic regions from SNP 17466 to 18067 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:31,708 DEBUG Processing 60/69 atomic regions from SNP 17767 to 18368 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:31,744 DEBUG Processing 283/860 atomic regions from SNP 84809 to 85409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,913 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:49:31,915 DEBUG chr8: Signal quantile: 0.993. signal threshold: 18. Best RMSEA: 0.019 2025-01-31 09:49:31,948 DEBUG Processing 61/69 atomic regions from SNP 18068 to 18669 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:31,998 DEBUG Processing 284/860 atomic regions from SNP 85109 to 85709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,186 DEBUG Processing 62/69 atomic regions from SNP 18369 to 18970 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:32,248 DEBUG Processing 285/860 atomic regions from SNP 85409 to 86009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,424 DEBUG Processing 63/69 atomic regions from SNP 18670 to 19271 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:32,501 DEBUG Processing 286/860 atomic regions from SNP 85709 to 86309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,678 DEBUG Processing 64/69 atomic regions from SNP 18971 to 19572 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:32,751 DEBUG Processing 287/860 atomic regions from SNP 86009 to 86609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,940 DEBUG Processing 65/69 atomic regions from SNP 19272 to 19873 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:32,995 DEBUG Processing 288/860 atomic regions from SNP 86309 to 86909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,207 DEBUG Processing 66/69 atomic regions from SNP 19573 to 20174 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:33,241 DEBUG Processing 289/860 atomic regions from SNP 86609 to 87209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,473 DEBUG Processing 67/69 atomic regions from SNP 19874 to 20475 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:33,490 DEBUG Processing 290/860 atomic regions from SNP 86909 to 87509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,751 DEBUG Processing 291/860 atomic regions from SNP 87209 to 87809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,752 DEBUG Processing 68/69 atomic regions from SNP 20175 to 20776 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:34,000 DEBUG Processing 292/860 atomic regions from SNP 87509 to 88109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,014 DEBUG Processing 69/69 atomic regions from SNP 20476 to 21077 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:34,142 DEBUG Unique SNPs positions in subchromosome 1: 21078 2025-01-31 09:49:34,200 DEBUG Subchromosome time: 19.53076421597507, subchromosome SNPs: 21078 2025-01-31 09:49:34,254 DEBUG Processing 293/860 atomic regions from SNP 87809 to 88409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,254 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:34,322 DEBUG chr8 total SNP count: 221810 2025-01-31 09:49:34,323 DEBUG chr8 length: 129401213 2025-01-31 09:49:34,323 DEBUG ----------------------------------------- 2025-01-31 09:49:34,323 INFO Processing SNPs in chr8 2025-01-31 09:49:34,505 DEBUG Processing 294/860 atomic regions from SNP 88109 to 88709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,551 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 221810)] 2025-01-31 09:49:34,708 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:34,749 DEBUG Processing 295/860 atomic regions from SNP 88409 to 89009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,994 DEBUG Processing 296/860 atomic regions from SNP 88709 to 89309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,240 DEBUG Processing 297/860 atomic regions from SNP 89009 to 89609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,485 DEBUG Processing 298/860 atomic regions from SNP 89309 to 89909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,734 DEBUG Processing 299/860 atomic regions from SNP 89609 to 90209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,975 DEBUG Processing 300/860 atomic regions from SNP 89909 to 90509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,216 DEBUG Processing 301/860 atomic regions from SNP 90209 to 90809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,463 DEBUG Processing 302/860 atomic regions from SNP 90509 to 91109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,725 DEBUG Processing 303/860 atomic regions from SNP 90809 to 91409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,998 DEBUG Processing 304/860 atomic regions from SNP 91109 to 91709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,260 DEBUG Processing 305/860 atomic regions from SNP 91409 to 92009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,518 DEBUG Processing 306/860 atomic regions from SNP 91709 to 92309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,759 DEBUG Processing 307/860 atomic regions from SNP 92009 to 92609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,000 DEBUG Processing 308/860 atomic regions from SNP 92309 to 92909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,243 DEBUG Processing 309/860 atomic regions from SNP 92609 to 93209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,489 DEBUG Processing 310/860 atomic regions from SNP 92909 to 93509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,730 DEBUG Processing 311/860 atomic regions from SNP 93209 to 93809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,967 DEBUG Processing 312/860 atomic regions from SNP 93509 to 94109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,209 DEBUG Processing 313/860 atomic regions from SNP 93809 to 94409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,463 DEBUG Processing 314/860 atomic regions from SNP 94109 to 94709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,699 DEBUG Processing 315/860 atomic regions from SNP 94409 to 95009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,950 DEBUG Processing 316/860 atomic regions from SNP 94709 to 95309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,193 DEBUG Processing 317/860 atomic regions from SNP 95009 to 95609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,431 DEBUG Processing 318/860 atomic regions from SNP 95309 to 95909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,673 DEBUG Processing 319/860 atomic regions from SNP 95609 to 96209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,918 DEBUG Processing 320/860 atomic regions from SNP 95909 to 96509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,188 DEBUG Processing 321/860 atomic regions from SNP 96209 to 96809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,446 DEBUG Processing 322/860 atomic regions from SNP 96509 to 97109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,615 DEBUG Segmenting atomic regions: 2025-01-31 09:49:41,691 DEBUG Processing 323/860 atomic regions from SNP 96809 to 97409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,718 DEBUG Processing 1/753 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,939 DEBUG Processing 324/860 atomic regions from SNP 97109 to 97709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,952 DEBUG Processing 2/753 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,183 DEBUG Processing 3/753 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,185 DEBUG Processing 325/860 atomic regions from SNP 97409 to 98009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,415 DEBUG Processing 4/753 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,431 DEBUG Processing 326/860 atomic regions from SNP 97709 to 98309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,652 DEBUG Processing 5/753 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,683 DEBUG Processing 327/860 atomic regions from SNP 98009 to 98609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,901 DEBUG Processing 6/753 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,935 DEBUG Processing 328/860 atomic regions from SNP 98309 to 98909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,141 DEBUG Processing 7/753 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,185 DEBUG Processing 329/860 atomic regions from SNP 98609 to 99209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,386 DEBUG Processing 8/753 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,437 DEBUG Processing 330/860 atomic regions from SNP 98909 to 99509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,629 DEBUG Processing 9/753 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,687 DEBUG Processing 331/860 atomic regions from SNP 99209 to 99809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,855 DEBUG Processing 10/753 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,936 DEBUG Processing 332/860 atomic regions from SNP 99509 to 100109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,084 DEBUG Processing 11/753 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,185 DEBUG Processing 333/860 atomic regions from SNP 99809 to 100409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,306 DEBUG Processing 12/753 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,426 DEBUG Processing 334/860 atomic regions from SNP 100109 to 100709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,528 DEBUG Processing 13/753 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,671 DEBUG Processing 335/860 atomic regions from SNP 100409 to 101009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,745 DEBUG Processing 14/753 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,916 DEBUG Processing 336/860 atomic regions from SNP 100709 to 101309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,962 DEBUG Processing 15/753 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,158 DEBUG Processing 337/860 atomic regions from SNP 101009 to 101609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,188 DEBUG Processing 16/753 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,404 DEBUG Processing 338/860 atomic regions from SNP 101309 to 101909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,451 DEBUG Processing 17/753 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,663 DEBUG Processing 339/860 atomic regions from SNP 101609 to 102209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,722 DEBUG Processing 18/753 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,906 DEBUG Processing 340/860 atomic regions from SNP 101909 to 102509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,949 DEBUG Processing 19/753 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,154 DEBUG Processing 341/860 atomic regions from SNP 102209 to 102809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,174 DEBUG Processing 20/753 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,400 DEBUG Processing 342/860 atomic regions from SNP 102509 to 103109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,404 DEBUG Processing 21/753 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,632 DEBUG Processing 22/753 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,648 DEBUG Processing 343/860 atomic regions from SNP 102809 to 103409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,873 DEBUG Processing 23/753 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,906 DEBUG Processing 344/860 atomic regions from SNP 103109 to 103709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,099 DEBUG Processing 24/753 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,153 DEBUG Processing 345/860 atomic regions from SNP 103409 to 104009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,326 DEBUG Processing 25/753 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,398 DEBUG Processing 346/860 atomic regions from SNP 103709 to 104309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,561 DEBUG Processing 26/753 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,647 DEBUG Processing 347/860 atomic regions from SNP 104009 to 104609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,824 DEBUG Processing 27/753 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,907 DEBUG Processing 348/860 atomic regions from SNP 104309 to 104909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,063 DEBUG Processing 28/753 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,163 DEBUG Processing 349/860 atomic regions from SNP 104609 to 105209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,296 DEBUG Processing 29/753 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,412 DEBUG Processing 350/860 atomic regions from SNP 104909 to 105509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,530 DEBUG Processing 30/753 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,658 DEBUG Processing 351/860 atomic regions from SNP 105209 to 105809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,771 DEBUG Processing 31/753 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,909 DEBUG Processing 352/860 atomic regions from SNP 105509 to 106109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,006 DEBUG Processing 32/753 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,159 DEBUG Processing 353/860 atomic regions from SNP 105809 to 106409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,242 DEBUG Processing 33/753 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,410 DEBUG Processing 354/860 atomic regions from SNP 106109 to 106709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,478 DEBUG Processing 34/753 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,654 DEBUG Processing 355/860 atomic regions from SNP 106409 to 107009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,711 DEBUG Processing 35/753 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,905 DEBUG Processing 356/860 atomic regions from SNP 106709 to 107309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,947 DEBUG Processing 36/753 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,153 DEBUG Processing 357/860 atomic regions from SNP 107009 to 107609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,177 DEBUG Processing 37/753 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,399 DEBUG Processing 358/860 atomic regions from SNP 107309 to 107909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,407 DEBUG Processing 38/753 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,637 DEBUG Processing 39/753 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,646 DEBUG Processing 359/860 atomic regions from SNP 107609 to 108209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,880 DEBUG Processing 40/753 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,905 DEBUG Processing 360/860 atomic regions from SNP 107909 to 108509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,122 DEBUG Processing 41/753 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,164 DEBUG Processing 361/860 atomic regions from SNP 108209 to 108809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,358 DEBUG Processing 42/753 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,421 DEBUG Processing 362/860 atomic regions from SNP 108509 to 109109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,597 DEBUG Processing 43/753 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,677 DEBUG Processing 363/860 atomic regions from SNP 108809 to 109409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,841 DEBUG Processing 44/753 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,928 DEBUG Processing 364/860 atomic regions from SNP 109109 to 109709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,077 DEBUG Processing 45/753 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,182 DEBUG Processing 365/860 atomic regions from SNP 109409 to 110009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,312 DEBUG Processing 46/753 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,437 DEBUG Processing 366/860 atomic regions from SNP 109709 to 110309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,543 DEBUG Processing 47/753 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,689 DEBUG Processing 367/860 atomic regions from SNP 110009 to 110609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,776 DEBUG Processing 48/753 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,939 DEBUG Processing 368/860 atomic regions from SNP 110309 to 110909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,014 DEBUG Processing 49/753 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,189 DEBUG Processing 369/860 atomic regions from SNP 110609 to 111209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,259 DEBUG Processing 50/753 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,440 DEBUG Processing 370/860 atomic regions from SNP 110909 to 111509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,507 DEBUG Processing 51/753 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,708 DEBUG Processing 371/860 atomic regions from SNP 111209 to 111809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,739 DEBUG Processing 52/753 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,963 DEBUG Processing 372/860 atomic regions from SNP 111509 to 112109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,977 DEBUG Processing 53/753 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,215 DEBUG Processing 54/753 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,217 DEBUG Processing 373/860 atomic regions from SNP 111809 to 112409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,448 DEBUG Processing 55/753 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,497 DEBUG Processing 374/860 atomic regions from SNP 112109 to 112709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,673 DEBUG Processing 56/753 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,781 DEBUG Processing 375/860 atomic regions from SNP 112409 to 113009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,895 DEBUG Processing 57/753 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,043 DEBUG Processing 376/860 atomic regions from SNP 112709 to 113309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,138 DEBUG Processing 58/753 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,297 DEBUG Processing 377/860 atomic regions from SNP 113009 to 113609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,373 DEBUG Processing 59/753 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,547 DEBUG Processing 378/860 atomic regions from SNP 113309 to 113909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,600 DEBUG Processing 60/753 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,802 DEBUG Processing 379/860 atomic regions from SNP 113609 to 114209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,833 DEBUG Processing 61/753 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,056 DEBUG Processing 380/860 atomic regions from SNP 113909 to 114509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,066 DEBUG Processing 62/753 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,299 DEBUG Processing 63/753 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,309 DEBUG Processing 381/860 atomic regions from SNP 114209 to 114809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,567 DEBUG Processing 64/753 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,577 DEBUG Processing 382/860 atomic regions from SNP 114509 to 115109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,823 DEBUG Processing 383/860 atomic regions from SNP 114809 to 115409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,824 DEBUG Processing 65/753 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,052 DEBUG Processing 66/753 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,067 DEBUG Processing 384/860 atomic regions from SNP 115109 to 115709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,289 DEBUG Processing 67/753 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,317 DEBUG Processing 385/860 atomic regions from SNP 115409 to 116009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,525 DEBUG Processing 68/753 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,570 DEBUG Processing 386/860 atomic regions from SNP 115709 to 116309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,761 DEBUG Processing 69/753 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,823 DEBUG Processing 387/860 atomic regions from SNP 116009 to 116609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,009 DEBUG Processing 70/753 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,085 DEBUG Processing 388/860 atomic regions from SNP 116309 to 116909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,248 DEBUG Processing 71/753 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,341 DEBUG Processing 389/860 atomic regions from SNP 116609 to 117209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,489 DEBUG Processing 72/753 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,598 DEBUG Processing 390/860 atomic regions from SNP 116909 to 117509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,737 DEBUG Processing 73/753 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,849 DEBUG Processing 391/860 atomic regions from SNP 117209 to 117809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,978 DEBUG Processing 74/753 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,099 DEBUG Processing 392/860 atomic regions from SNP 117509 to 118109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,219 DEBUG Processing 75/753 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,363 DEBUG Processing 393/860 atomic regions from SNP 117809 to 118409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,456 DEBUG Processing 76/753 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,625 DEBUG Processing 394/860 atomic regions from SNP 118109 to 118709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,698 DEBUG Processing 77/753 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,870 DEBUG Processing 395/860 atomic regions from SNP 118409 to 119009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,940 DEBUG Processing 78/753 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,125 DEBUG Processing 396/860 atomic regions from SNP 118709 to 119309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,176 DEBUG Processing 79/753 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,380 DEBUG Processing 397/860 atomic regions from SNP 119009 to 119609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,404 DEBUG Processing 80/753 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,642 DEBUG Processing 81/753 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,659 DEBUG Processing 398/860 atomic regions from SNP 119309 to 119909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,888 DEBUG Processing 82/753 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,939 DEBUG Segmenting atomic regions: 2025-01-31 09:50:00,941 DEBUG Processing 399/860 atomic regions from SNP 119609 to 120209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,048 DEBUG Processing 1/709 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,129 DEBUG Processing 83/753 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,220 DEBUG Processing 400/860 atomic regions from SNP 119909 to 120509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,278 DEBUG Processing 2/709 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,358 DEBUG Processing 84/753 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,477 DEBUG Processing 401/860 atomic regions from SNP 120209 to 120809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,521 DEBUG Processing 3/709 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,587 DEBUG Processing 85/753 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,762 DEBUG Processing 4/709 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,762 DEBUG Processing 402/860 atomic regions from SNP 120509 to 121109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,817 DEBUG Processing 86/753 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,011 DEBUG Processing 5/709 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,048 DEBUG Processing 403/860 atomic regions from SNP 120809 to 121409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,076 DEBUG Processing 87/753 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,221 DEBUG Segmenting atomic regions: 2025-01-31 09:50:02,276 DEBUG Processing 6/709 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,320 DEBUG Processing 88/753 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,321 DEBUG Processing 1/738 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,360 DEBUG Processing 404/860 atomic regions from SNP 121109 to 121709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,556 DEBUG Processing 7/709 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,563 DEBUG Processing 89/753 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,566 DEBUG Processing 2/738 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,646 DEBUG Processing 405/860 atomic regions from SNP 121409 to 122009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,808 DEBUG Processing 90/753 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,820 DEBUG Processing 8/709 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,824 DEBUG Processing 3/738 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,907 DEBUG Processing 406/860 atomic regions from SNP 121709 to 122309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,052 DEBUG Processing 91/753 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,084 DEBUG Processing 9/709 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,085 DEBUG Processing 4/738 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,173 DEBUG Processing 407/860 atomic regions from SNP 122009 to 122609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,284 DEBUG Processing 92/753 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,321 DEBUG Processing 5/738 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,360 DEBUG Processing 10/709 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,417 DEBUG Processing 408/860 atomic regions from SNP 122309 to 122909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,515 DEBUG Processing 93/753 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,554 DEBUG Processing 6/738 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,614 DEBUG Processing 11/709 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,662 DEBUG Processing 409/860 atomic regions from SNP 122609 to 123209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,748 DEBUG Processing 94/753 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,803 DEBUG Processing 7/738 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,889 DEBUG Processing 12/709 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,911 DEBUG Processing 410/860 atomic regions from SNP 122909 to 123509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,994 DEBUG Processing 95/753 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,062 DEBUG Processing 8/738 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,147 DEBUG Processing 13/709 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,163 DEBUG Processing 411/860 atomic regions from SNP 123209 to 123809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,220 DEBUG Processing 96/753 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,292 DEBUG Processing 9/738 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,351 DEBUG Subchromosome time: 410.0756702130893, subchromosome SNPs: 342234 2025-01-31 09:50:04,352 DEBUG Estimated BADs: [0.74, 4.44, 1.11, 8.88, 0.74, 1.11, 4.44, 2.22, 19.98, 1.11, 2.22, 4.44, 2.22, 19.98, 2.22, 11.10, 2.22, 4.44, 22.20, 4.44, 8.88, 1.11, 0.74, 2.22, 0.74, 4.44, 2.22, 6.66, 2.22, 0.56, 2.22, 0.74, 4.44, 2.22, 8.88, 2.22, 6.66, 2.22, 6.66, 4.44, 22.20, 2.22, 8.88, 4.44] SNP counts: [10900, 731, 10751, 102, 25399, 4661, 10767, 8854, 96, 13371, 11376, 12486, 12601, 202, 3557, 1977, 17102, 1798, 457, 12773, 949, 8906, 8406, 6904, 17160, 3246, 19370, 10652, 5968, 4501, 3901, 9709, 22603, 4596, 1743, 8768, 2681, 10517, 5684, 7544, 143, 10072, 2055, 6195] SNP IDs counts: [10900, 731, 10751, 102, 25399, 4661, 10767, 8854, 96, 13371, 11376, 12486, 12601, 202, 3557, 1977, 17102, 1798, 457, 12773, 949, 8906, 8406, 6904, 17160, 3246, 19370, 10652, 5968, 4501, 3901, 9709, 22603, 4596, 1743, 8768, 2681, 10517, 5684, 7544, 143, 10072, 2055, 6195] Critical gap: 755682bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.54Mbp, 9.93Mbp, 16.09Mbp, 16.14Mbp, 30.87Mbp, 33.60Mbp, 39.36Mbp, 44.10Mbp, 44.15Mbp, 52.07Mbp, 58.39Mbp, 65.18Mbp, 72.20Mbp, 72.31Mbp, 74.23Mbp, 75.34Mbp, 84.84Mbp, 86.29Mbp, 86.53Mbp, 93.34Mbp, 93.85Mbp, 99.23Mbp, 104.14Mbp, 108.06Mbp, 118.31Mbp, 120.01Mbp, 130.71Mbp, 136.30Mbp, 139.56Mbp, 142.29Mbp, 144.61Mbp, 150.39Mbp, 162.53Mbp, 165.07Mbp, 166.01Mbp, 170.83Mbp, 172.31Mbp, 178.30Mbp, 181.31Mbp, 185.45Mbp, 185.52Mbp, 190.88Mbp, 191.96Mbp, 195.47Mbp] 2025-01-31 09:50:04,352 DEBUG chr1 time: 410.076450237073 s 2025-01-31 09:50:04,414 DEBUG Processing 14/709 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,424 DEBUG Processing 412/860 atomic regions from SNP 123509 to 124109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,459 DEBUG Processing 97/753 atomic regions from SNP 28896 to 29497 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,524 DEBUG Processing 10/738 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,575 DEBUG chr1: Fitting background model for 44 segments 2025-01-31 09:50:04,692 DEBUG Processing 15/709 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,694 DEBUG Processing 413/860 atomic regions from SNP 123809 to 124409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,708 DEBUG Processing 98/753 atomic regions from SNP 29197 to 29798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,757 DEBUG Processing 11/738 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,947 DEBUG Processing 16/709 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,960 DEBUG Processing 414/860 atomic regions from SNP 124109 to 124709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,970 DEBUG Processing 99/753 atomic regions from SNP 29498 to 30099 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,001 DEBUG Processing 12/738 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,194 DEBUG Processing 17/709 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,224 DEBUG Processing 415/860 atomic regions from SNP 124409 to 125009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,232 DEBUG Processing 100/753 atomic regions from SNP 29799 to 30400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,249 DEBUG Processing 13/738 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,441 DEBUG Processing 18/709 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,488 DEBUG Processing 416/860 atomic regions from SNP 124709 to 125309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,495 DEBUG Processing 101/753 atomic regions from SNP 30100 to 30701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,500 DEBUG Processing 14/738 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,684 DEBUG Processing 19/709 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,756 DEBUG Processing 15/738 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,761 DEBUG Processing 417/860 atomic regions from SNP 125009 to 125609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,778 DEBUG Processing 102/753 atomic regions from SNP 30401 to 31002 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,935 DEBUG Processing 20/709 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,993 DEBUG Processing 16/738 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,016 DEBUG Processing 418/860 atomic regions from SNP 125309 to 125909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,020 DEBUG Processing 103/753 atomic regions from SNP 30702 to 31303 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,172 DEBUG Processing 21/709 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,229 DEBUG Processing 17/738 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,255 DEBUG Processing 104/753 atomic regions from SNP 31003 to 31604 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,269 DEBUG Processing 419/860 atomic regions from SNP 125609 to 126209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,445 DEBUG Processing 22/709 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,475 DEBUG Processing 18/738 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,492 DEBUG Processing 105/753 atomic regions from SNP 31304 to 31905 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,525 DEBUG Processing 420/860 atomic regions from SNP 125909 to 126509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,719 DEBUG Processing 19/738 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,723 DEBUG Processing 23/709 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,759 DEBUG Processing 106/753 atomic regions from SNP 31605 to 32206 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,787 DEBUG Processing 421/860 atomic regions from SNP 126209 to 126809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,951 DEBUG Processing 20/738 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,990 DEBUG Processing 24/709 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,005 DEBUG Processing 107/753 atomic regions from SNP 31906 to 32507 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,056 DEBUG Processing 422/860 atomic regions from SNP 126509 to 127109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,196 DEBUG Processing 21/738 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,248 DEBUG Processing 108/753 atomic regions from SNP 32207 to 32808 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,260 DEBUG Processing 25/709 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,312 DEBUG Processing 423/860 atomic regions from SNP 126809 to 127409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,438 DEBUG Processing 22/738 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,494 DEBUG Processing 109/753 atomic regions from SNP 32508 to 33109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,523 DEBUG Processing 26/709 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,573 DEBUG Processing 424/860 atomic regions from SNP 127109 to 127709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,686 DEBUG Processing 23/738 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,743 DEBUG Processing 110/753 atomic regions from SNP 32809 to 33410 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,772 DEBUG Processing 27/709 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,831 DEBUG Processing 425/860 atomic regions from SNP 127409 to 128009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,929 DEBUG Processing 24/738 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,990 DEBUG Processing 111/753 atomic regions from SNP 33110 to 33711 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,042 DEBUG Processing 28/709 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,087 DEBUG Processing 426/860 atomic regions from SNP 127709 to 128309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,166 DEBUG Processing 25/738 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,233 DEBUG Processing 112/753 atomic regions from SNP 33411 to 34012 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,317 DEBUG Processing 29/709 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,340 DEBUG Processing 427/860 atomic regions from SNP 128009 to 128609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,398 DEBUG Processing 26/738 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,471 DEBUG Processing 113/753 atomic regions from SNP 33712 to 34313 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,588 DEBUG Processing 30/709 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,599 DEBUG Processing 428/860 atomic regions from SNP 128309 to 128909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,644 DEBUG Processing 27/738 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,720 DEBUG Processing 114/753 atomic regions from SNP 34013 to 34614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,856 DEBUG Processing 31/709 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,866 DEBUG Processing 429/860 atomic regions from SNP 128609 to 129209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,897 DEBUG Processing 28/738 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,965 DEBUG Processing 115/753 atomic regions from SNP 34314 to 34915 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,117 DEBUG Processing 430/860 atomic regions from SNP 128909 to 129509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,129 DEBUG Processing 32/709 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,135 DEBUG Processing 29/738 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,207 DEBUG Processing 116/753 atomic regions from SNP 34615 to 35216 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,368 DEBUG Processing 431/860 atomic regions from SNP 129209 to 129809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,371 DEBUG Processing 30/738 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,402 DEBUG Processing 33/709 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,459 DEBUG Processing 117/753 atomic regions from SNP 34916 to 35517 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,610 DEBUG Processing 31/738 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,622 DEBUG Processing 432/860 atomic regions from SNP 129509 to 130109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,660 DEBUG Processing 34/709 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,684 DEBUG Processing 118/753 atomic regions from SNP 35217 to 35818 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,845 DEBUG Processing 32/738 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,877 DEBUG Processing 433/860 atomic regions from SNP 129809 to 130409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,917 DEBUG Processing 119/753 atomic regions from SNP 35518 to 36119 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,925 DEBUG Processing 35/709 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,086 DEBUG Processing 33/738 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,144 DEBUG Processing 434/860 atomic regions from SNP 130109 to 130709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,166 DEBUG Processing 120/753 atomic regions from SNP 35819 to 36420 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,193 DEBUG Processing 36/709 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,320 DEBUG Processing 34/738 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,393 DEBUG Processing 435/860 atomic regions from SNP 130409 to 131009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,399 DEBUG Processing 121/753 atomic regions from SNP 36120 to 36721 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,429 DEBUG Processing 37/709 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,557 DEBUG Processing 35/738 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,631 DEBUG Processing 122/753 atomic regions from SNP 36421 to 37022 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,642 DEBUG Processing 436/860 atomic regions from SNP 130709 to 131309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,665 DEBUG Processing 38/709 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,787 DEBUG Processing 36/738 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,869 DEBUG Processing 123/753 atomic regions from SNP 36722 to 37323 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,898 DEBUG Processing 437/860 atomic regions from SNP 131009 to 131609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,913 DEBUG Processing 39/709 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,018 DEBUG Processing 37/738 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,104 DEBUG Processing 124/753 atomic regions from SNP 37023 to 37624 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,151 DEBUG Processing 438/860 atomic regions from SNP 131309 to 131909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,172 DEBUG Processing 40/709 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,258 DEBUG Processing 38/738 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,332 DEBUG Processing 125/753 atomic regions from SNP 37324 to 37925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,399 DEBUG Processing 439/860 atomic regions from SNP 131609 to 132209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,441 DEBUG Processing 41/709 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,517 DEBUG Processing 39/738 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,574 DEBUG Processing 126/753 atomic regions from SNP 37625 to 38226 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,650 DEBUG Processing 440/860 atomic regions from SNP 131909 to 132509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,708 DEBUG Processing 42/709 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,756 DEBUG Processing 40/738 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,810 DEBUG Processing 127/753 atomic regions from SNP 37926 to 38527 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,897 DEBUG Processing 441/860 atomic regions from SNP 132209 to 132809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,982 DEBUG Processing 43/709 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,997 DEBUG Processing 41/738 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,050 DEBUG Processing 128/753 atomic regions from SNP 38227 to 38828 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,153 DEBUG Processing 442/860 atomic regions from SNP 132509 to 133109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,240 DEBUG Processing 42/738 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,243 DEBUG Processing 44/709 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,288 DEBUG Processing 129/753 atomic regions from SNP 38528 to 39129 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,406 DEBUG Processing 443/860 atomic regions from SNP 132809 to 133409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,488 DEBUG Processing 43/738 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,502 DEBUG Processing 45/709 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,535 DEBUG Processing 130/753 atomic regions from SNP 38829 to 39430 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,660 DEBUG Processing 444/860 atomic regions from SNP 133109 to 133709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,738 DEBUG Processing 44/738 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,755 DEBUG Processing 46/709 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,779 DEBUG Processing 131/753 atomic regions from SNP 39130 to 39731 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,923 DEBUG Processing 445/860 atomic regions from SNP 133409 to 134009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,993 DEBUG Processing 45/738 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,011 DEBUG Processing 47/709 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,032 DEBUG Processing 132/753 atomic regions from SNP 39431 to 40032 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,182 DEBUG Processing 446/860 atomic regions from SNP 133709 to 134309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,271 DEBUG Processing 48/709 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,273 DEBUG Processing 46/738 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,279 DEBUG Processing 133/753 atomic regions from SNP 39732 to 40333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,445 DEBUG Processing 447/860 atomic regions from SNP 134009 to 134609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,515 DEBUG Processing 49/709 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,523 DEBUG Processing 134/753 atomic regions from SNP 40033 to 40634 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,534 DEBUG Processing 47/738 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,702 DEBUG Processing 448/860 atomic regions from SNP 134309 to 134909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,762 DEBUG Processing 50/709 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,764 DEBUG Processing 135/753 atomic regions from SNP 40334 to 40935 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,775 DEBUG Processing 48/738 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,956 DEBUG Processing 449/860 atomic regions from SNP 134609 to 135209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,003 DEBUG Processing 51/709 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,005 DEBUG Processing 136/753 atomic regions from SNP 40635 to 41236 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,022 DEBUG Processing 49/738 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,212 DEBUG Processing 450/860 atomic regions from SNP 134909 to 135509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,248 DEBUG Processing 52/709 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,250 DEBUG Processing 137/753 atomic regions from SNP 40936 to 41537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,294 DEBUG Processing 50/738 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,477 DEBUG Processing 451/860 atomic regions from SNP 135209 to 135809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,496 DEBUG Processing 53/709 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,499 DEBUG Processing 138/753 atomic regions from SNP 41237 to 41838 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,556 DEBUG Processing 51/738 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,735 DEBUG Processing 452/860 atomic regions from SNP 135509 to 136109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,740 DEBUG Processing 139/753 atomic regions from SNP 41538 to 42139 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,742 DEBUG Processing 54/709 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,798 DEBUG Processing 52/738 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,981 DEBUG Processing 140/753 atomic regions from SNP 41839 to 42440 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,998 DEBUG Processing 453/860 atomic regions from SNP 135809 to 136409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,012 DEBUG Processing 55/709 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,038 DEBUG Processing 53/738 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,224 DEBUG Processing 141/753 atomic regions from SNP 42140 to 42741 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,255 DEBUG Processing 454/860 atomic regions from SNP 136109 to 136709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,266 DEBUG Processing 56/709 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,273 DEBUG Processing 54/738 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,469 DEBUG Processing 142/753 atomic regions from SNP 42441 to 43042 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,510 DEBUG Processing 57/709 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,516 DEBUG Processing 455/860 atomic regions from SNP 136409 to 137009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,518 DEBUG Processing 55/738 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,717 DEBUG Processing 143/753 atomic regions from SNP 42742 to 43343 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,764 DEBUG Processing 56/738 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,768 DEBUG Processing 58/709 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,784 DEBUG Processing 456/860 atomic regions from SNP 136709 to 137309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,965 DEBUG Processing 144/753 atomic regions from SNP 43043 to 43644 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,008 DEBUG Processing 57/738 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,013 DEBUG Processing 59/709 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,047 DEBUG Processing 457/860 atomic regions from SNP 137009 to 137609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,212 DEBUG Processing 145/753 atomic regions from SNP 43344 to 43945 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,253 DEBUG Processing 58/738 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,255 DEBUG Processing 60/709 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,302 DEBUG Processing 458/860 atomic regions from SNP 137309 to 137909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,461 DEBUG Processing 146/753 atomic regions from SNP 43645 to 44246 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,505 DEBUG Processing 61/709 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,510 DEBUG Processing 59/738 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,560 DEBUG Processing 459/860 atomic regions from SNP 137609 to 138209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,713 DEBUG Processing 147/753 atomic regions from SNP 43946 to 44547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,783 DEBUG Processing 62/709 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,788 DEBUG Processing 60/738 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,825 DEBUG Processing 460/860 atomic regions from SNP 137909 to 138509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,954 DEBUG Processing 148/753 atomic regions from SNP 44247 to 44848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,046 DEBUG Processing 63/709 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,061 DEBUG Processing 61/738 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,087 DEBUG Processing 461/860 atomic regions from SNP 138209 to 138809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,191 DEBUG Processing 149/753 atomic regions from SNP 44548 to 45149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,303 DEBUG Processing 64/709 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,310 DEBUG Processing 62/738 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,340 DEBUG Processing 462/860 atomic regions from SNP 138509 to 139109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,421 DEBUG Processing 150/753 atomic regions from SNP 44849 to 45450 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,545 DEBUG Processing 63/738 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,552 DEBUG Processing 65/709 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,602 DEBUG Processing 463/860 atomic regions from SNP 138809 to 139409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,654 DEBUG Processing 151/753 atomic regions from SNP 45150 to 45751 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,789 DEBUG Processing 66/709 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,807 DEBUG Processing 64/738 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,873 DEBUG Processing 464/860 atomic regions from SNP 139109 to 139709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,890 DEBUG Processing 152/753 atomic regions from SNP 45451 to 46052 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,029 DEBUG Processing 67/709 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,052 DEBUG Processing 65/738 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,131 DEBUG Processing 153/753 atomic regions from SNP 45752 to 46353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,149 DEBUG Processing 465/860 atomic regions from SNP 139409 to 140009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,273 DEBUG Processing 68/709 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,296 DEBUG Processing 66/738 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,368 DEBUG Processing 154/753 atomic regions from SNP 46053 to 46654 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,438 DEBUG Processing 466/860 atomic regions from SNP 139709 to 140309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,514 DEBUG Processing 69/709 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,538 DEBUG Processing 67/738 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,607 DEBUG Processing 155/753 atomic regions from SNP 46354 to 46955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,714 DEBUG Processing 467/860 atomic regions from SNP 140009 to 140609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,751 DEBUG Processing 70/709 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,780 DEBUG Processing 68/738 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,846 DEBUG Processing 156/753 atomic regions from SNP 46655 to 47256 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,998 DEBUG Processing 71/709 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,000 DEBUG Processing 468/860 atomic regions from SNP 140309 to 140909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,030 DEBUG Processing 69/738 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,090 DEBUG Processing 157/753 atomic regions from SNP 46956 to 47557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,236 DEBUG Processing 72/709 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,273 DEBUG Processing 469/860 atomic regions from SNP 140609 to 141209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,282 DEBUG Processing 70/738 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,330 DEBUG Processing 158/753 atomic regions from SNP 47257 to 47858 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,477 DEBUG Processing 73/709 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,556 DEBUG Processing 470/860 atomic regions from SNP 140909 to 141509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,567 DEBUG Processing 71/738 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,573 DEBUG Processing 159/753 atomic regions from SNP 47558 to 48159 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,721 DEBUG Processing 74/709 atomic regions from SNP 21973 to 22574 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,817 DEBUG Processing 72/738 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,824 DEBUG Processing 160/753 atomic regions from SNP 47859 to 48460 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,826 DEBUG Processing 471/860 atomic regions from SNP 141209 to 141809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,957 DEBUG Processing 75/709 atomic regions from SNP 22274 to 22875 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,058 DEBUG Processing 73/738 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,066 DEBUG Processing 161/753 atomic regions from SNP 48160 to 48761 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,085 DEBUG Processing 472/860 atomic regions from SNP 141509 to 142109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,191 DEBUG Processing 76/709 atomic regions from SNP 22575 to 23176 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,309 DEBUG Processing 74/738 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,320 DEBUG Processing 162/753 atomic regions from SNP 48461 to 49062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,354 DEBUG Processing 473/860 atomic regions from SNP 141809 to 142409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,430 DEBUG Processing 77/709 atomic regions from SNP 22876 to 23477 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,543 DEBUG Processing 75/738 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,557 DEBUG Processing 163/753 atomic regions from SNP 48762 to 49363 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,609 DEBUG Processing 474/860 atomic regions from SNP 142109 to 142709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,672 DEBUG Processing 78/709 atomic regions from SNP 23177 to 23778 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,779 DEBUG Processing 76/738 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,793 DEBUG Processing 164/753 atomic regions from SNP 49063 to 49664 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,868 DEBUG Processing 475/860 atomic regions from SNP 142409 to 143009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,925 DEBUG Processing 79/709 atomic regions from SNP 23478 to 24079 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,020 DEBUG Processing 77/738 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,033 DEBUG Processing 165/753 atomic regions from SNP 49364 to 49965 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,130 DEBUG Processing 476/860 atomic regions from SNP 142709 to 143309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,200 DEBUG Processing 80/709 atomic regions from SNP 23779 to 24380 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,261 DEBUG Processing 78/738 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,277 DEBUG Processing 166/753 atomic regions from SNP 49665 to 50266 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,382 DEBUG Processing 477/860 atomic regions from SNP 143009 to 143609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,451 DEBUG Processing 81/709 atomic regions from SNP 24080 to 24681 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,498 DEBUG Processing 79/738 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,514 DEBUG Processing 167/753 atomic regions from SNP 49966 to 50567 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,633 DEBUG Processing 478/860 atomic regions from SNP 143309 to 143909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,696 DEBUG Processing 82/709 atomic regions from SNP 24381 to 24982 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,744 DEBUG Processing 80/738 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,754 DEBUG Processing 168/753 atomic regions from SNP 50267 to 50868 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,892 DEBUG Processing 479/860 atomic regions from SNP 143609 to 144209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,940 DEBUG Processing 83/709 atomic regions from SNP 24682 to 25283 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,985 DEBUG Processing 81/738 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,994 DEBUG Processing 169/753 atomic regions from SNP 50568 to 51169 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,186 DEBUG Processing 480/860 atomic regions from SNP 143909 to 144509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,189 DEBUG Processing 84/709 atomic regions from SNP 24983 to 25584 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,227 DEBUG Processing 82/738 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,234 DEBUG Processing 170/753 atomic regions from SNP 50869 to 51470 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,433 DEBUG Processing 85/709 atomic regions from SNP 25284 to 25885 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,460 DEBUG Processing 481/860 atomic regions from SNP 144209 to 144809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,471 DEBUG Processing 83/738 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,476 DEBUG Processing 171/753 atomic regions from SNP 51170 to 51771 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,677 DEBUG Processing 86/709 atomic regions from SNP 25585 to 26186 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,716 DEBUG Processing 84/738 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,722 DEBUG Processing 172/753 atomic regions from SNP 51471 to 52072 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,722 DEBUG Processing 482/860 atomic regions from SNP 144509 to 145109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,918 DEBUG Processing 87/709 atomic regions from SNP 25886 to 26487 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,959 DEBUG Processing 85/738 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,962 DEBUG Processing 173/753 atomic regions from SNP 51772 to 52373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,001 DEBUG Processing 483/860 atomic regions from SNP 144809 to 145409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,158 DEBUG Processing 88/709 atomic regions from SNP 26187 to 26788 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,205 DEBUG Processing 86/738 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,207 DEBUG Processing 174/753 atomic regions from SNP 52073 to 52674 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,281 DEBUG Processing 484/860 atomic regions from SNP 145109 to 145709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,395 DEBUG Processing 89/709 atomic regions from SNP 26488 to 27089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,450 DEBUG Processing 87/738 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,453 DEBUG Processing 175/753 atomic regions from SNP 52374 to 52975 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,552 DEBUG Processing 485/860 atomic regions from SNP 145409 to 146009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,630 DEBUG Processing 90/709 atomic regions from SNP 26789 to 27390 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,687 DEBUG Processing 88/738 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,691 DEBUG Processing 176/753 atomic regions from SNP 52675 to 53276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,843 DEBUG Processing 486/860 atomic regions from SNP 145709 to 146309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,863 DEBUG Processing 91/709 atomic regions from SNP 27090 to 27691 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,930 DEBUG Processing 89/738 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,932 DEBUG Processing 177/753 atomic regions from SNP 52976 to 53576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,100 DEBUG Processing 92/709 atomic regions from SNP 27391 to 27992 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,133 DEBUG Processing 487/860 atomic regions from SNP 146009 to 146609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,162 DEBUG Processing 90/738 atomic regions from SNP 26789 to 27390 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,163 DEBUG Processing 178/753 atomic regions from SNP 53276 to 53876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,346 DEBUG Processing 93/709 atomic regions from SNP 27692 to 28293 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,402 DEBUG Processing 179/753 atomic regions from SNP 53576 to 54176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,402 DEBUG Processing 91/738 atomic regions from SNP 27090 to 27691 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,424 DEBUG Processing 488/860 atomic regions from SNP 146309 to 146909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,589 DEBUG Processing 94/709 atomic regions from SNP 27993 to 28594 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,636 DEBUG Processing 180/753 atomic regions from SNP 53876 to 54476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,638 DEBUG Processing 92/738 atomic regions from SNP 27391 to 27992 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,701 DEBUG Processing 489/860 atomic regions from SNP 146609 to 147209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,841 DEBUG Processing 95/709 atomic regions from SNP 28294 to 28895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,878 DEBUG Processing 181/753 atomic regions from SNP 54176 to 54776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,890 DEBUG Processing 93/738 atomic regions from SNP 27692 to 28293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,973 DEBUG Processing 490/860 atomic regions from SNP 146909 to 147509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,090 DEBUG Processing 96/709 atomic regions from SNP 28595 to 29196 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,123 DEBUG Processing 182/753 atomic regions from SNP 54476 to 55076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,149 DEBUG Processing 94/738 atomic regions from SNP 27993 to 28594 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,248 DEBUG Processing 491/860 atomic regions from SNP 147209 to 147809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,332 DEBUG Processing 97/709 atomic regions from SNP 28896 to 29497 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,366 DEBUG Processing 183/753 atomic regions from SNP 54776 to 55376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,387 DEBUG Processing 95/738 atomic regions from SNP 28294 to 28895 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,492 DEBUG Processing 492/860 atomic regions from SNP 147509 to 148109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,575 DEBUG Processing 98/709 atomic regions from SNP 29197 to 29798 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,610 DEBUG Processing 184/753 atomic regions from SNP 55076 to 55676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,629 DEBUG Processing 96/738 atomic regions from SNP 28595 to 29196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,738 DEBUG Processing 493/860 atomic regions from SNP 147809 to 148409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,812 DEBUG Processing 99/709 atomic regions from SNP 29498 to 30099 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,850 DEBUG Processing 185/753 atomic regions from SNP 55376 to 55976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,872 DEBUG Processing 97/738 atomic regions from SNP 28896 to 29497 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,001 DEBUG Processing 494/860 atomic regions from SNP 148109 to 148709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,047 DEBUG Processing 100/709 atomic regions from SNP 29799 to 30400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,092 DEBUG Processing 186/753 atomic regions from SNP 55676 to 56276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,113 DEBUG Processing 98/738 atomic regions from SNP 29197 to 29798 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,285 DEBUG Processing 495/860 atomic regions from SNP 148409 to 149009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,289 DEBUG Processing 101/709 atomic regions from SNP 30100 to 30701 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,331 DEBUG Processing 187/753 atomic regions from SNP 55976 to 56576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,360 DEBUG Processing 99/738 atomic regions from SNP 29498 to 30099 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,526 DEBUG Processing 102/709 atomic regions from SNP 30401 to 31002 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,557 DEBUG Processing 496/860 atomic regions from SNP 148709 to 149309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,573 DEBUG Processing 188/753 atomic regions from SNP 56276 to 56876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,600 DEBUG Processing 100/738 atomic regions from SNP 29799 to 30400 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,755 DEBUG Processing 103/709 atomic regions from SNP 30702 to 31303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,812 DEBUG Processing 189/753 atomic regions from SNP 56576 to 57176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,841 DEBUG Processing 497/860 atomic regions from SNP 149009 to 149609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,857 DEBUG Processing 101/738 atomic regions from SNP 30100 to 30701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,979 DEBUG Processing 104/709 atomic regions from SNP 31003 to 31604 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,041 DEBUG Processing 190/753 atomic regions from SNP 56876 to 57476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,095 DEBUG Processing 102/738 atomic regions from SNP 30401 to 31002 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,112 DEBUG Processing 498/860 atomic regions from SNP 149309 to 149909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,209 DEBUG Processing 105/709 atomic regions from SNP 31304 to 31905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,274 DEBUG Processing 191/753 atomic regions from SNP 57176 to 57776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,346 DEBUG Processing 103/738 atomic regions from SNP 30702 to 31303 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,390 DEBUG Processing 499/860 atomic regions from SNP 149609 to 150209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,443 DEBUG Processing 106/709 atomic regions from SNP 31605 to 32206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,507 DEBUG Processing 192/753 atomic regions from SNP 57476 to 58076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,599 DEBUG Processing 104/738 atomic regions from SNP 31003 to 31604 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,669 DEBUG Processing 500/860 atomic regions from SNP 149909 to 150509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,685 DEBUG Processing 107/709 atomic regions from SNP 31906 to 32506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,754 DEBUG Processing 193/753 atomic regions from SNP 57776 to 58376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,893 DEBUG Processing 105/738 atomic regions from SNP 31304 to 31905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,945 DEBUG Processing 108/709 atomic regions from SNP 32206 to 32806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,973 DEBUG Processing 501/860 atomic regions from SNP 150209 to 150809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,987 DEBUG Processing 194/753 atomic regions from SNP 58076 to 58676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,134 DEBUG Processing 106/738 atomic regions from SNP 31605 to 32206 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,200 DEBUG Processing 109/709 atomic regions from SNP 32506 to 33106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,224 DEBUG Processing 195/753 atomic regions from SNP 58376 to 58976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,265 DEBUG Processing 502/860 atomic regions from SNP 150509 to 151109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,395 DEBUG Processing 107/738 atomic regions from SNP 31906 to 32507 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,463 DEBUG Processing 196/753 atomic regions from SNP 58676 to 59276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,470 DEBUG Processing 110/709 atomic regions from SNP 32806 to 33406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,521 DEBUG Processing 503/860 atomic regions from SNP 150809 to 151409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,645 DEBUG Processing 108/738 atomic regions from SNP 32207 to 32808 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,702 DEBUG Processing 197/753 atomic regions from SNP 58976 to 59576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,750 DEBUG Processing 111/709 atomic regions from SNP 33106 to 33706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,787 DEBUG Processing 504/860 atomic regions from SNP 151109 to 151709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,917 DEBUG Processing 109/738 atomic regions from SNP 32508 to 33109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,957 DEBUG Processing 198/753 atomic regions from SNP 59276 to 59876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,020 DEBUG Processing 112/709 atomic regions from SNP 33406 to 34006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,060 DEBUG Processing 505/860 atomic regions from SNP 151409 to 152009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,183 DEBUG Processing 110/738 atomic regions from SNP 32809 to 33409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,197 DEBUG Processing 199/753 atomic regions from SNP 59576 to 60176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,297 DEBUG Processing 113/709 atomic regions from SNP 33706 to 34306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,327 DEBUG Processing 506/860 atomic regions from SNP 151709 to 152309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,426 DEBUG Processing 111/738 atomic regions from SNP 33109 to 33709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,441 DEBUG Processing 200/753 atomic regions from SNP 59876 to 60476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,568 DEBUG Processing 114/709 atomic regions from SNP 34006 to 34606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,582 DEBUG Processing 507/860 atomic regions from SNP 152009 to 152609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,668 DEBUG Processing 112/738 atomic regions from SNP 33409 to 34009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,681 DEBUG Processing 201/753 atomic regions from SNP 60176 to 60776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,833 DEBUG Processing 508/860 atomic regions from SNP 152309 to 152909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,840 DEBUG Processing 115/709 atomic regions from SNP 34306 to 34906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,911 DEBUG Processing 113/738 atomic regions from SNP 33709 to 34309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,924 DEBUG Processing 202/753 atomic regions from SNP 60476 to 61076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,081 DEBUG Processing 509/860 atomic regions from SNP 152609 to 153209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,109 DEBUG Processing 116/709 atomic regions from SNP 34606 to 35206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,156 DEBUG Processing 114/738 atomic regions from SNP 34009 to 34609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,170 DEBUG Processing 203/753 atomic regions from SNP 60776 to 61376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,341 DEBUG Processing 510/860 atomic regions from SNP 152909 to 153509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,391 DEBUG Processing 117/709 atomic regions from SNP 34906 to 35506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,406 DEBUG Processing 115/738 atomic regions from SNP 34309 to 34909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,423 DEBUG Processing 204/753 atomic regions from SNP 61076 to 61676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,605 DEBUG Processing 511/860 atomic regions from SNP 153209 to 153809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,652 DEBUG Processing 116/738 atomic regions from SNP 34609 to 35209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,666 DEBUG Processing 205/753 atomic regions from SNP 61376 to 61976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,674 DEBUG Processing 118/709 atomic regions from SNP 35206 to 35806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,891 DEBUG Processing 512/860 atomic regions from SNP 153509 to 154109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,898 DEBUG Processing 117/738 atomic regions from SNP 34909 to 35509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,911 DEBUG Processing 206/753 atomic regions from SNP 61676 to 62276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,947 DEBUG Processing 119/709 atomic regions from SNP 35506 to 36106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,140 DEBUG Processing 118/738 atomic regions from SNP 35209 to 35809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,151 DEBUG Processing 207/753 atomic regions from SNP 61976 to 62576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,171 DEBUG Processing 513/860 atomic regions from SNP 153809 to 154409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,204 DEBUG Processing 120/709 atomic regions from SNP 35806 to 36406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,381 DEBUG Processing 119/738 atomic regions from SNP 35509 to 36109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,395 DEBUG Processing 208/753 atomic regions from SNP 62276 to 62876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,455 DEBUG Processing 514/860 atomic regions from SNP 154109 to 154709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,456 DEBUG Processing 121/709 atomic regions from SNP 36106 to 36706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,613 DEBUG Processing 120/738 atomic regions from SNP 35809 to 36409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,628 DEBUG Processing 209/753 atomic regions from SNP 62576 to 63176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,694 DEBUG Processing 122/709 atomic regions from SNP 36406 to 37006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,735 DEBUG Processing 515/860 atomic regions from SNP 154409 to 155009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,847 DEBUG Processing 121/738 atomic regions from SNP 36109 to 36709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,861 DEBUG Processing 210/753 atomic regions from SNP 62876 to 63476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,931 DEBUG Processing 123/709 atomic regions from SNP 36706 to 37306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,010 DEBUG Processing 516/860 atomic regions from SNP 154709 to 155309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,083 DEBUG Processing 122/738 atomic regions from SNP 36409 to 37009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,097 DEBUG Processing 211/753 atomic regions from SNP 63176 to 63776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,167 DEBUG Processing 124/709 atomic regions from SNP 37006 to 37606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,287 DEBUG Processing 517/860 atomic regions from SNP 155009 to 155609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,324 DEBUG Processing 123/738 atomic regions from SNP 36709 to 37309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,338 DEBUG Processing 212/753 atomic regions from SNP 63476 to 64076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,423 DEBUG Processing 125/709 atomic regions from SNP 37306 to 37906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,570 DEBUG Processing 518/860 atomic regions from SNP 155309 to 155909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,579 DEBUG Processing 213/753 atomic regions from SNP 63776 to 64376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,589 DEBUG Processing 124/738 atomic regions from SNP 37009 to 37609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,681 DEBUG Processing 126/709 atomic regions from SNP 37606 to 38206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,820 DEBUG Processing 214/753 atomic regions from SNP 64076 to 64676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,851 DEBUG Processing 519/860 atomic regions from SNP 155609 to 156209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,860 DEBUG Processing 125/738 atomic regions from SNP 37309 to 37909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,936 DEBUG Processing 127/709 atomic regions from SNP 37906 to 38506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,084 DEBUG Processing 215/753 atomic regions from SNP 64376 to 64976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,121 DEBUG Processing 126/738 atomic regions from SNP 37609 to 38209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,124 DEBUG Processing 520/860 atomic regions from SNP 155909 to 156509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,176 DEBUG Processing 128/709 atomic regions from SNP 38206 to 38806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,360 DEBUG Processing 216/753 atomic regions from SNP 64676 to 65276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,382 DEBUG Processing 127/738 atomic regions from SNP 37909 to 38509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,420 DEBUG Processing 521/860 atomic regions from SNP 156209 to 156809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,431 DEBUG Processing 129/709 atomic regions from SNP 38506 to 39106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,611 DEBUG Processing 217/753 atomic regions from SNP 64976 to 65576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,622 DEBUG Processing 128/738 atomic regions from SNP 38209 to 38809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,676 DEBUG Processing 130/709 atomic regions from SNP 38806 to 39406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,692 DEBUG Processing 522/860 atomic regions from SNP 156509 to 157109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,858 DEBUG Processing 129/738 atomic regions from SNP 38509 to 39109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,879 DEBUG Processing 218/753 atomic regions from SNP 65276 to 65876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,920 DEBUG Processing 131/709 atomic regions from SNP 39106 to 39706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,958 DEBUG Processing 523/860 atomic regions from SNP 156809 to 157409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,091 DEBUG Processing 130/738 atomic regions from SNP 38809 to 39409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,151 DEBUG Processing 219/753 atomic regions from SNP 65576 to 66176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,168 DEBUG Processing 132/709 atomic regions from SNP 39406 to 40006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,218 DEBUG Processing 524/860 atomic regions from SNP 157109 to 157709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,316 DEBUG Processing 131/738 atomic regions from SNP 39109 to 39709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,403 DEBUG Processing 220/753 atomic regions from SNP 65876 to 66476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,427 DEBUG Processing 133/709 atomic regions from SNP 39706 to 40306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,494 DEBUG Processing 525/860 atomic regions from SNP 157409 to 158009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,538 DEBUG Processing 132/738 atomic regions from SNP 39409 to 40009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,646 DEBUG Processing 221/753 atomic regions from SNP 66176 to 66776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,673 DEBUG Processing 134/709 atomic regions from SNP 40006 to 40606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,754 DEBUG Processing 526/860 atomic regions from SNP 157709 to 158309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,783 DEBUG Processing 133/738 atomic regions from SNP 39709 to 40309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,881 DEBUG Processing 222/753 atomic regions from SNP 66476 to 67076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,918 DEBUG Processing 135/709 atomic regions from SNP 40306 to 40906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,013 DEBUG Processing 527/860 atomic regions from SNP 158009 to 158609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,046 DEBUG Processing 134/738 atomic regions from SNP 40009 to 40609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,114 DEBUG Processing 223/753 atomic regions from SNP 66776 to 67376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,162 DEBUG Processing 136/709 atomic regions from SNP 40606 to 41206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,271 DEBUG Processing 528/860 atomic regions from SNP 158309 to 158909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,308 DEBUG Processing 135/738 atomic regions from SNP 40309 to 40909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,352 DEBUG Processing 224/753 atomic regions from SNP 67076 to 67676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,419 DEBUG Processing 137/709 atomic regions from SNP 40906 to 41506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,526 DEBUG Processing 529/860 atomic regions from SNP 158609 to 159209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,540 DEBUG Processing 136/738 atomic regions from SNP 40609 to 41209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,594 DEBUG Processing 225/753 atomic regions from SNP 67376 to 67976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,674 DEBUG Processing 138/709 atomic regions from SNP 41206 to 41806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,774 DEBUG Processing 137/738 atomic regions from SNP 40909 to 41509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,779 DEBUG Processing 530/860 atomic regions from SNP 158909 to 159509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,843 DEBUG Processing 226/753 atomic regions from SNP 67676 to 68276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,924 DEBUG Processing 139/709 atomic regions from SNP 41506 to 42106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,009 DEBUG Processing 138/738 atomic regions from SNP 41209 to 41809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,036 DEBUG Processing 531/860 atomic regions from SNP 159209 to 159809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,089 DEBUG Processing 227/753 atomic regions from SNP 67976 to 68576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,169 DEBUG Processing 140/709 atomic regions from SNP 41806 to 42406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,248 DEBUG Processing 139/738 atomic regions from SNP 41509 to 42109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,295 DEBUG Processing 532/860 atomic regions from SNP 159509 to 160109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,346 DEBUG Processing 228/753 atomic regions from SNP 68276 to 68876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,412 DEBUG Processing 141/709 atomic regions from SNP 42106 to 42706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,486 DEBUG Processing 140/738 atomic regions from SNP 41809 to 42409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,555 DEBUG Processing 533/860 atomic regions from SNP 159809 to 160409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,598 DEBUG Processing 229/753 atomic regions from SNP 68576 to 69176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,668 DEBUG Processing 142/709 atomic regions from SNP 42406 to 43006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,723 DEBUG Processing 141/738 atomic regions from SNP 42109 to 42709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,812 DEBUG Processing 534/860 atomic regions from SNP 160109 to 160709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,849 DEBUG Processing 230/753 atomic regions from SNP 68876 to 69476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,915 DEBUG Processing 143/709 atomic regions from SNP 42706 to 43306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,960 DEBUG Processing 142/738 atomic regions from SNP 42409 to 43009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,070 DEBUG Processing 535/860 atomic regions from SNP 160409 to 161009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,111 DEBUG Processing 231/753 atomic regions from SNP 69176 to 69776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,150 DEBUG Processing 144/709 atomic regions from SNP 43006 to 43606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,193 DEBUG Processing 143/738 atomic regions from SNP 42709 to 43309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,319 DEBUG Processing 536/860 atomic regions from SNP 160709 to 161309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,376 DEBUG Processing 232/753 atomic regions from SNP 69476 to 70076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,385 DEBUG Processing 145/709 atomic regions from SNP 43306 to 43906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,427 DEBUG Processing 144/738 atomic regions from SNP 43009 to 43609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,578 DEBUG Processing 537/860 atomic regions from SNP 161009 to 161609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,621 DEBUG Processing 146/709 atomic regions from SNP 43606 to 44206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,648 DEBUG Processing 233/753 atomic regions from SNP 69776 to 70376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,661 DEBUG Processing 145/738 atomic regions from SNP 43309 to 43909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,850 DEBUG Processing 538/860 atomic regions from SNP 161309 to 161909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,861 DEBUG Processing 147/709 atomic regions from SNP 43906 to 44506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,901 DEBUG Processing 146/738 atomic regions from SNP 43609 to 44209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,904 DEBUG Processing 234/753 atomic regions from SNP 70076 to 70676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,124 DEBUG Processing 148/709 atomic regions from SNP 44206 to 44806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,139 DEBUG Processing 539/860 atomic regions from SNP 161609 to 162209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,146 DEBUG Processing 147/738 atomic regions from SNP 43909 to 44509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,150 DEBUG Processing 235/753 atomic regions from SNP 70376 to 70976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,372 DEBUG Processing 149/709 atomic regions from SNP 44506 to 45106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,397 DEBUG Processing 148/738 atomic regions from SNP 44209 to 44809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,401 DEBUG Processing 236/753 atomic regions from SNP 70676 to 71276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,417 DEBUG Processing 540/860 atomic regions from SNP 161909 to 162509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,615 DEBUG Processing 150/709 atomic regions from SNP 44806 to 45406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,643 DEBUG Processing 149/738 atomic regions from SNP 44509 to 45109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,652 DEBUG Processing 237/753 atomic regions from SNP 70976 to 71576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,685 DEBUG Processing 541/860 atomic regions from SNP 162209 to 162809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,854 DEBUG Processing 151/709 atomic regions from SNP 45106 to 45706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,881 DEBUG Processing 150/738 atomic regions from SNP 44809 to 45409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,895 DEBUG Processing 238/753 atomic regions from SNP 71276 to 71876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,946 DEBUG Processing 542/860 atomic regions from SNP 162509 to 163109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,089 DEBUG Processing 152/709 atomic regions from SNP 45406 to 46006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,117 DEBUG Processing 151/738 atomic regions from SNP 45109 to 45709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,164 DEBUG Processing 239/753 atomic regions from SNP 71576 to 72176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,206 DEBUG Processing 543/860 atomic regions from SNP 162809 to 163409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,325 DEBUG Processing 153/709 atomic regions from SNP 45706 to 46306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,351 DEBUG Processing 152/738 atomic regions from SNP 45409 to 46009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,426 DEBUG Processing 240/753 atomic regions from SNP 71876 to 72476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,458 DEBUG Processing 544/860 atomic regions from SNP 163109 to 163709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,564 DEBUG Processing 154/709 atomic regions from SNP 46006 to 46606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,587 DEBUG Processing 153/738 atomic regions from SNP 45709 to 46309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,668 DEBUG Processing 241/753 atomic regions from SNP 72176 to 72776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,712 DEBUG Processing 545/860 atomic regions from SNP 163409 to 164009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,803 DEBUG Processing 155/709 atomic regions from SNP 46306 to 46906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,826 DEBUG Processing 154/738 atomic regions from SNP 46009 to 46609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,905 DEBUG Processing 242/753 atomic regions from SNP 72476 to 73076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,967 DEBUG Processing 546/860 atomic regions from SNP 163709 to 164309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,042 DEBUG Processing 156/709 atomic regions from SNP 46606 to 47206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,069 DEBUG Processing 155/738 atomic regions from SNP 46309 to 46909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,143 DEBUG Processing 243/753 atomic regions from SNP 72776 to 73376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,226 DEBUG Processing 547/860 atomic regions from SNP 164009 to 164609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,284 DEBUG Processing 157/709 atomic regions from SNP 46906 to 47506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,309 DEBUG Processing 156/738 atomic regions from SNP 46609 to 47209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,380 DEBUG Processing 244/753 atomic regions from SNP 73076 to 73676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,483 DEBUG Processing 548/860 atomic regions from SNP 164309 to 164909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,537 DEBUG Processing 158/709 atomic regions from SNP 47206 to 47806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,559 DEBUG Processing 157/738 atomic regions from SNP 46909 to 47509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,621 DEBUG Processing 245/753 atomic regions from SNP 73376 to 73976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,734 DEBUG Processing 549/860 atomic regions from SNP 164609 to 165209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,775 DEBUG Processing 159/709 atomic regions from SNP 47506 to 48106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,797 DEBUG Processing 158/738 atomic regions from SNP 47209 to 47809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,856 DEBUG Processing 246/753 atomic regions from SNP 73676 to 74276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,979 DEBUG Processing 550/860 atomic regions from SNP 164909 to 165509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,007 DEBUG Processing 160/709 atomic regions from SNP 47806 to 48406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,027 DEBUG Processing 159/738 atomic regions from SNP 47509 to 48109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,088 DEBUG Processing 247/753 atomic regions from SNP 73976 to 74576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,225 DEBUG Processing 551/860 atomic regions from SNP 165209 to 165809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,238 DEBUG Processing 161/709 atomic regions from SNP 48106 to 48706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,257 DEBUG Processing 160/738 atomic regions from SNP 47809 to 48409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,324 DEBUG Processing 248/753 atomic regions from SNP 74276 to 74876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,463 DEBUG Processing 162/709 atomic regions from SNP 48406 to 49006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,473 DEBUG Processing 552/860 atomic regions from SNP 165509 to 166109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,487 DEBUG Processing 161/738 atomic regions from SNP 48109 to 48709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,557 DEBUG Processing 249/753 atomic regions from SNP 74576 to 75176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,684 DEBUG Processing 163/709 atomic regions from SNP 48706 to 49306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,709 DEBUG Processing 162/738 atomic regions from SNP 48409 to 49009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,743 DEBUG Processing 553/860 atomic regions from SNP 165809 to 166409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,789 DEBUG Processing 250/753 atomic regions from SNP 74876 to 75476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,928 DEBUG Processing 164/709 atomic regions from SNP 49006 to 49606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,929 DEBUG Processing 163/738 atomic regions from SNP 48709 to 49309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,995 DEBUG Processing 554/860 atomic regions from SNP 166109 to 166709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,023 DEBUG Processing 251/753 atomic regions from SNP 75176 to 75776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,155 DEBUG Processing 164/738 atomic regions from SNP 49009 to 49609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,157 DEBUG Processing 165/709 atomic regions from SNP 49306 to 49906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,247 DEBUG Processing 555/860 atomic regions from SNP 166409 to 167009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,260 DEBUG Processing 252/753 atomic regions from SNP 75476 to 76076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,385 DEBUG Processing 165/738 atomic regions from SNP 49309 to 49909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,391 DEBUG Processing 166/709 atomic regions from SNP 49606 to 50206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,499 DEBUG Processing 253/753 atomic regions from SNP 75776 to 76376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,505 DEBUG Processing 556/860 atomic regions from SNP 166709 to 167309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,616 DEBUG Processing 166/738 atomic regions from SNP 49609 to 50209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,625 DEBUG Processing 167/709 atomic regions from SNP 49906 to 50506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,732 DEBUG Processing 254/753 atomic regions from SNP 76076 to 76676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,757 DEBUG Processing 557/860 atomic regions from SNP 167009 to 167609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,842 DEBUG Processing 167/738 atomic regions from SNP 49909 to 50509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,852 DEBUG Processing 168/709 atomic regions from SNP 50206 to 50806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,963 DEBUG Processing 255/753 atomic regions from SNP 76376 to 76976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,010 DEBUG Processing 558/860 atomic regions from SNP 167309 to 167909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,080 DEBUG Processing 168/738 atomic regions from SNP 50209 to 50809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,091 DEBUG Processing 169/709 atomic regions from SNP 50506 to 51106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,198 DEBUG Processing 256/753 atomic regions from SNP 76676 to 77276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,266 DEBUG Processing 559/860 atomic regions from SNP 167609 to 168209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,317 DEBUG Processing 169/738 atomic regions from SNP 50509 to 51109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,331 DEBUG Processing 170/709 atomic regions from SNP 50806 to 51406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,432 DEBUG Processing 257/753 atomic regions from SNP 76976 to 77576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,521 DEBUG Processing 560/860 atomic regions from SNP 167909 to 168509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,561 DEBUG Processing 170/738 atomic regions from SNP 50809 to 51409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,576 DEBUG Processing 171/709 atomic regions from SNP 51106 to 51706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,665 DEBUG Processing 258/753 atomic regions from SNP 77276 to 77876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,770 DEBUG Processing 561/860 atomic regions from SNP 168209 to 168809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,806 DEBUG Processing 171/738 atomic regions from SNP 51109 to 51709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,820 DEBUG Processing 172/709 atomic regions from SNP 51406 to 52006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,902 DEBUG Processing 259/753 atomic regions from SNP 77576 to 78176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,025 DEBUG Processing 562/860 atomic regions from SNP 168509 to 169109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,063 DEBUG Processing 173/709 atomic regions from SNP 51706 to 52306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,067 DEBUG Processing 172/738 atomic regions from SNP 51409 to 52009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,137 DEBUG Processing 260/753 atomic regions from SNP 77876 to 78476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,283 DEBUG Processing 563/860 atomic regions from SNP 168809 to 169409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,312 DEBUG Processing 174/709 atomic regions from SNP 52006 to 52606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,330 DEBUG Processing 173/738 atomic regions from SNP 51709 to 52309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,380 DEBUG Processing 261/753 atomic regions from SNP 78176 to 78776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,541 DEBUG Processing 564/860 atomic regions from SNP 169109 to 169709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,558 DEBUG Processing 175/709 atomic regions from SNP 52306 to 52906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,593 DEBUG Processing 174/738 atomic regions from SNP 52009 to 52609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,622 DEBUG Processing 262/753 atomic regions from SNP 78476 to 79076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,796 DEBUG Processing 565/860 atomic regions from SNP 169409 to 170009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,803 DEBUG Processing 176/709 atomic regions from SNP 52606 to 53206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,848 DEBUG Processing 175/738 atomic regions from SNP 52309 to 52909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,867 DEBUG Processing 263/753 atomic regions from SNP 78776 to 79376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,055 DEBUG Processing 566/860 atomic regions from SNP 169709 to 170309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,067 DEBUG Processing 177/709 atomic regions from SNP 52906 to 53506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,095 DEBUG Processing 176/738 atomic regions from SNP 52609 to 53209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,113 DEBUG Processing 264/753 atomic regions from SNP 79076 to 79676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,314 DEBUG Processing 567/860 atomic regions from SNP 170009 to 170609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,327 DEBUG Processing 178/709 atomic regions from SNP 53206 to 53806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,347 DEBUG Processing 177/738 atomic regions from SNP 52909 to 53509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,363 DEBUG Processing 265/753 atomic regions from SNP 79376 to 79976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,578 DEBUG Processing 179/709 atomic regions from SNP 53506 to 54106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,581 DEBUG Processing 568/860 atomic regions from SNP 170309 to 170909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,596 DEBUG Processing 178/738 atomic regions from SNP 53209 to 53809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,614 DEBUG Processing 266/753 atomic regions from SNP 79676 to 80276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,824 DEBUG Processing 180/709 atomic regions from SNP 53806 to 54406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,840 DEBUG Processing 179/738 atomic regions from SNP 53509 to 54109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,846 DEBUG Processing 569/860 atomic regions from SNP 170609 to 171209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,860 DEBUG Processing 267/753 atomic regions from SNP 79976 to 80576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,070 DEBUG Processing 181/709 atomic regions from SNP 54106 to 54706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,088 DEBUG Processing 180/738 atomic regions from SNP 53809 to 54409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,108 DEBUG Processing 268/753 atomic regions from SNP 80276 to 80876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,117 DEBUG Processing 570/860 atomic regions from SNP 170909 to 171509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,311 DEBUG Processing 182/709 atomic regions from SNP 54406 to 55006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,334 DEBUG Processing 181/738 atomic regions from SNP 54109 to 54709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,353 DEBUG Processing 269/753 atomic regions from SNP 80576 to 81176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,381 DEBUG Processing 571/860 atomic regions from SNP 171209 to 171809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,552 DEBUG Processing 183/709 atomic regions from SNP 54706 to 55306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,578 DEBUG Processing 182/738 atomic regions from SNP 54409 to 55009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,597 DEBUG Processing 270/753 atomic regions from SNP 80876 to 81476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,665 DEBUG Processing 572/860 atomic regions from SNP 171509 to 172109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,797 DEBUG Processing 184/709 atomic regions from SNP 55006 to 55606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,823 DEBUG Processing 183/738 atomic regions from SNP 54709 to 55309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,844 DEBUG Processing 271/753 atomic regions from SNP 81176 to 81776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,933 DEBUG Processing 573/860 atomic regions from SNP 171809 to 172409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,037 DEBUG Processing 185/709 atomic regions from SNP 55306 to 55906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,062 DEBUG Processing 184/738 atomic regions from SNP 55009 to 55609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,075 DEBUG Processing 272/753 atomic regions from SNP 81476 to 82076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,189 DEBUG Processing 574/860 atomic regions from SNP 172109 to 172709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,277 DEBUG Processing 186/709 atomic regions from SNP 55606 to 56206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,297 DEBUG Processing 185/738 atomic regions from SNP 55309 to 55909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,310 DEBUG Processing 273/753 atomic regions from SNP 81776 to 82376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,434 DEBUG Processing 575/860 atomic regions from SNP 172409 to 173009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,512 DEBUG Processing 187/709 atomic regions from SNP 55906 to 56506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,529 DEBUG Processing 186/738 atomic regions from SNP 55609 to 56209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,538 DEBUG Processing 274/753 atomic regions from SNP 82076 to 82676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,680 DEBUG Processing 576/860 atomic regions from SNP 172709 to 173309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,753 DEBUG Processing 188/709 atomic regions from SNP 56206 to 56806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,763 DEBUG Processing 187/738 atomic regions from SNP 55909 to 56509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,773 DEBUG Processing 275/753 atomic regions from SNP 82376 to 82976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,924 DEBUG Processing 577/860 atomic regions from SNP 173009 to 173609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,992 DEBUG Processing 189/709 atomic regions from SNP 56506 to 57106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,009 DEBUG Processing 276/753 atomic regions from SNP 82676 to 83276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,020 DEBUG Processing 188/738 atomic regions from SNP 56209 to 56809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,173 DEBUG Processing 578/860 atomic regions from SNP 173309 to 173909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,238 DEBUG Processing 190/709 atomic regions from SNP 56806 to 57406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,250 DEBUG Processing 277/753 atomic regions from SNP 82976 to 83576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,261 DEBUG Processing 189/738 atomic regions from SNP 56509 to 57109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,430 DEBUG Processing 579/860 atomic regions from SNP 173609 to 174209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,490 DEBUG Processing 191/709 atomic regions from SNP 57106 to 57706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,497 DEBUG Processing 278/753 atomic regions from SNP 83276 to 83876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,505 DEBUG Processing 190/738 atomic regions from SNP 56809 to 57409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,690 DEBUG Processing 580/860 atomic regions from SNP 173909 to 174509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,742 DEBUG Processing 192/709 atomic regions from SNP 57406 to 58006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,749 DEBUG Processing 279/753 atomic regions from SNP 83576 to 84176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,753 DEBUG Processing 191/738 atomic regions from SNP 57109 to 57709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,948 DEBUG Processing 581/860 atomic regions from SNP 174209 to 174809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,991 DEBUG Processing 193/709 atomic regions from SNP 57706 to 58306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,997 DEBUG Processing 280/753 atomic regions from SNP 83876 to 84476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,999 DEBUG Processing 192/738 atomic regions from SNP 57409 to 58009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,210 DEBUG Processing 582/860 atomic regions from SNP 174509 to 175109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,256 DEBUG Processing 194/709 atomic regions from SNP 58006 to 58606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,261 DEBUG Processing 281/753 atomic regions from SNP 84176 to 84776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,262 DEBUG Processing 193/738 atomic regions from SNP 57709 to 58309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,477 DEBUG Processing 583/860 atomic regions from SNP 174809 to 175409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,513 DEBUG Processing 195/709 atomic regions from SNP 58306 to 58906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,516 DEBUG Processing 194/738 atomic regions from SNP 58009 to 58609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,517 DEBUG Processing 282/753 atomic regions from SNP 84476 to 85076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,736 DEBUG Processing 584/860 atomic regions from SNP 175109 to 175709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,765 DEBUG Processing 195/738 atomic regions from SNP 58309 to 58909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,765 DEBUG Processing 196/709 atomic regions from SNP 58606 to 59206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,766 DEBUG Processing 283/753 atomic regions from SNP 84776 to 85376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,995 DEBUG Processing 585/860 atomic regions from SNP 175409 to 176009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,011 DEBUG Processing 196/738 atomic regions from SNP 58609 to 59209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,013 DEBUG Processing 284/753 atomic regions from SNP 85076 to 85676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,015 DEBUG Processing 197/709 atomic regions from SNP 58906 to 59506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,258 DEBUG Processing 197/738 atomic regions from SNP 58909 to 59509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,261 DEBUG Processing 586/860 atomic regions from SNP 175709 to 176309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,262 DEBUG Processing 285/753 atomic regions from SNP 85376 to 85976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,266 DEBUG Processing 198/709 atomic regions from SNP 59206 to 59806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,504 DEBUG Processing 198/738 atomic regions from SNP 59209 to 59809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,512 DEBUG Processing 286/753 atomic regions from SNP 85676 to 86276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,520 DEBUG Processing 199/709 atomic regions from SNP 59506 to 60106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,528 DEBUG Processing 587/860 atomic regions from SNP 176009 to 176609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,740 DEBUG Processing 199/738 atomic regions from SNP 59509 to 60109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,752 DEBUG Processing 287/753 atomic regions from SNP 85976 to 86576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,763 DEBUG Processing 200/709 atomic regions from SNP 59806 to 60406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,790 DEBUG Processing 588/860 atomic regions from SNP 176309 to 176909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,978 DEBUG Processing 200/738 atomic regions from SNP 59809 to 60409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,991 DEBUG Processing 288/753 atomic regions from SNP 86276 to 86876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,011 DEBUG Processing 201/709 atomic regions from SNP 60106 to 60706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,056 DEBUG Processing 589/860 atomic regions from SNP 176609 to 177209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,211 DEBUG Processing 201/738 atomic regions from SNP 60109 to 60709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,225 DEBUG Processing 289/753 atomic regions from SNP 86576 to 87176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,252 DEBUG Processing 202/709 atomic regions from SNP 60406 to 61006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,317 DEBUG Processing 590/860 atomic regions from SNP 176909 to 177509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,449 DEBUG Processing 202/738 atomic regions from SNP 60409 to 61009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,465 DEBUG Processing 290/753 atomic regions from SNP 86876 to 87476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,498 DEBUG Processing 203/709 atomic regions from SNP 60706 to 61306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,577 DEBUG Processing 591/860 atomic regions from SNP 177209 to 177809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,688 DEBUG Processing 203/738 atomic regions from SNP 60709 to 61309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,707 DEBUG Processing 291/753 atomic regions from SNP 87176 to 87776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,754 DEBUG Processing 204/709 atomic regions from SNP 61006 to 61606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,831 DEBUG Processing 592/860 atomic regions from SNP 177509 to 178109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,936 DEBUG Processing 204/738 atomic regions from SNP 61009 to 61609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,955 DEBUG Processing 292/753 atomic regions from SNP 87476 to 88076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,005 DEBUG Processing 205/709 atomic regions from SNP 61306 to 61906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,089 DEBUG Processing 593/860 atomic regions from SNP 177809 to 178409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,181 DEBUG Processing 205/738 atomic regions from SNP 61309 to 61909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,201 DEBUG Processing 293/753 atomic regions from SNP 87776 to 88376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,257 DEBUG Processing 206/709 atomic regions from SNP 61606 to 62206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,345 DEBUG Processing 594/860 atomic regions from SNP 178109 to 178709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,423 DEBUG Processing 206/738 atomic regions from SNP 61609 to 62209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,447 DEBUG Processing 294/753 atomic regions from SNP 88076 to 88676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,505 DEBUG Processing 207/709 atomic regions from SNP 61906 to 62506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,600 DEBUG Processing 595/860 atomic regions from SNP 178409 to 179009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,666 DEBUG Processing 207/738 atomic regions from SNP 61909 to 62509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,691 DEBUG Processing 295/753 atomic regions from SNP 88376 to 88976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,754 DEBUG Processing 208/709 atomic regions from SNP 62206 to 62806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,861 DEBUG Processing 596/860 atomic regions from SNP 178709 to 179309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,914 DEBUG Processing 208/738 atomic regions from SNP 62209 to 62809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,951 DEBUG Processing 296/753 atomic regions from SNP 88676 to 89276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,006 DEBUG Processing 209/709 atomic regions from SNP 62506 to 63106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,122 DEBUG Processing 597/860 atomic regions from SNP 179009 to 179609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,162 DEBUG Processing 209/738 atomic regions from SNP 62509 to 63109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,217 DEBUG Processing 297/753 atomic regions from SNP 88976 to 89576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,256 DEBUG Processing 210/709 atomic regions from SNP 62806 to 63406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,381 DEBUG Processing 598/860 atomic regions from SNP 179309 to 179909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,409 DEBUG Processing 210/738 atomic regions from SNP 62809 to 63409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,468 DEBUG Processing 298/753 atomic regions from SNP 89276 to 89876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,506 DEBUG Processing 211/709 atomic regions from SNP 63106 to 63706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,640 DEBUG Processing 599/860 atomic regions from SNP 179609 to 180209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,653 DEBUG Processing 211/738 atomic regions from SNP 63109 to 63709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,713 DEBUG Processing 299/753 atomic regions from SNP 89576 to 90176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,752 DEBUG Processing 212/709 atomic regions from SNP 63406 to 64006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,895 DEBUG Processing 212/738 atomic regions from SNP 63409 to 64009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,902 DEBUG Processing 600/860 atomic regions from SNP 179909 to 180509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,963 DEBUG Processing 300/753 atomic regions from SNP 89876 to 90476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,005 DEBUG Processing 213/709 atomic regions from SNP 63706 to 64306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,140 DEBUG Processing 213/738 atomic regions from SNP 63709 to 64309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,168 DEBUG Processing 601/860 atomic regions from SNP 180209 to 180809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,213 DEBUG Processing 301/753 atomic regions from SNP 90176 to 90776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,254 DEBUG Processing 214/709 atomic regions from SNP 64006 to 64606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,383 DEBUG Processing 214/738 atomic regions from SNP 64009 to 64609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,435 DEBUG Processing 602/860 atomic regions from SNP 180509 to 181109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,464 DEBUG Processing 302/753 atomic regions from SNP 90476 to 91076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,504 DEBUG Processing 215/709 atomic regions from SNP 64306 to 64906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,625 DEBUG Processing 215/738 atomic regions from SNP 64309 to 64909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,701 DEBUG Processing 603/860 atomic regions from SNP 180809 to 181409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,719 DEBUG Processing 303/753 atomic regions from SNP 90776 to 91376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,757 DEBUG Processing 216/709 atomic regions from SNP 64606 to 65206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,863 DEBUG Processing 216/738 atomic regions from SNP 64609 to 65209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,967 DEBUG Processing 304/753 atomic regions from SNP 91076 to 91676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,968 DEBUG Processing 604/860 atomic regions from SNP 181109 to 181709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,011 DEBUG Processing 217/709 atomic regions from SNP 64906 to 65506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,100 DEBUG Processing 217/738 atomic regions from SNP 64909 to 65509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,213 DEBUG Processing 305/753 atomic regions from SNP 91376 to 91976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,235 DEBUG Processing 605/860 atomic regions from SNP 181409 to 182009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,271 DEBUG Processing 218/709 atomic regions from SNP 65206 to 65806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,340 DEBUG Processing 218/738 atomic regions from SNP 65209 to 65809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,459 DEBUG Processing 306/753 atomic regions from SNP 91676 to 92276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,507 DEBUG Processing 606/860 atomic regions from SNP 181709 to 182309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,563 DEBUG Processing 219/709 atomic regions from SNP 65506 to 66106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,581 DEBUG Processing 219/738 atomic regions from SNP 65509 to 66109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,705 DEBUG Processing 307/753 atomic regions from SNP 91976 to 92576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,772 DEBUG Processing 607/860 atomic regions from SNP 182009 to 182609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,826 DEBUG Processing 220/738 atomic regions from SNP 65809 to 66409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,838 DEBUG Processing 220/709 atomic regions from SNP 65806 to 66406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,956 DEBUG Processing 308/753 atomic regions from SNP 92276 to 92876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,048 DEBUG Processing 608/860 atomic regions from SNP 182309 to 182909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,083 DEBUG Processing 221/738 atomic regions from SNP 66109 to 66709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,095 DEBUG Processing 221/709 atomic regions from SNP 66106 to 66706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,207 DEBUG Processing 309/753 atomic regions from SNP 92576 to 93176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,318 DEBUG Processing 609/860 atomic regions from SNP 182609 to 183209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,330 DEBUG Processing 222/738 atomic regions from SNP 66409 to 67009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,345 DEBUG Processing 222/709 atomic regions from SNP 66406 to 67006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,451 DEBUG Processing 310/753 atomic regions from SNP 92876 to 93476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,583 DEBUG Processing 223/738 atomic regions from SNP 66709 to 67309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,592 DEBUG Processing 610/860 atomic regions from SNP 182909 to 183509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,599 DEBUG Processing 223/709 atomic regions from SNP 66706 to 67306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,693 DEBUG Processing 311/753 atomic regions from SNP 93176 to 93776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,834 DEBUG Processing 224/738 atomic regions from SNP 67009 to 67609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,853 DEBUG Processing 224/709 atomic regions from SNP 67006 to 67606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,862 DEBUG Processing 611/860 atomic regions from SNP 183209 to 183809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,936 DEBUG Processing 312/753 atomic regions from SNP 93476 to 94076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,084 DEBUG Processing 225/738 atomic regions from SNP 67309 to 67909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,105 DEBUG Processing 225/709 atomic regions from SNP 67306 to 67906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,128 DEBUG Processing 612/860 atomic regions from SNP 183509 to 184109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,197 DEBUG Processing 313/753 atomic regions from SNP 93776 to 94376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,335 DEBUG Processing 226/738 atomic regions from SNP 67609 to 68209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,359 DEBUG Processing 226/709 atomic regions from SNP 67606 to 68206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,394 DEBUG Processing 613/860 atomic regions from SNP 183809 to 184409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,442 DEBUG Processing 314/753 atomic regions from SNP 94076 to 94676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,586 DEBUG Processing 227/738 atomic regions from SNP 67909 to 68509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,612 DEBUG Processing 227/709 atomic regions from SNP 67906 to 68506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,661 DEBUG Processing 614/860 atomic regions from SNP 184109 to 184709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,688 DEBUG Processing 315/753 atomic regions from SNP 94376 to 94976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,837 DEBUG Processing 228/738 atomic regions from SNP 68209 to 68809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,864 DEBUG Processing 228/709 atomic regions from SNP 68206 to 68806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,926 DEBUG Processing 615/860 atomic regions from SNP 184409 to 185009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,937 DEBUG Processing 316/753 atomic regions from SNP 94676 to 95276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,084 DEBUG Processing 229/738 atomic regions from SNP 68509 to 69109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,117 DEBUG Processing 229/709 atomic regions from SNP 68506 to 69106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,184 DEBUG Processing 317/753 atomic regions from SNP 94976 to 95576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,192 DEBUG Processing 616/860 atomic regions from SNP 184709 to 185309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,334 DEBUG Processing 230/738 atomic regions from SNP 68809 to 69409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,369 DEBUG Processing 230/709 atomic regions from SNP 68806 to 69406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,431 DEBUG Processing 318/753 atomic regions from SNP 95276 to 95876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,462 DEBUG Processing 617/860 atomic regions from SNP 185009 to 185609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,589 DEBUG Processing 231/738 atomic regions from SNP 69109 to 69709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,630 DEBUG Processing 231/709 atomic regions from SNP 69106 to 69706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,687 DEBUG Processing 319/753 atomic regions from SNP 95576 to 96176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,731 DEBUG Processing 618/860 atomic regions from SNP 185309 to 185909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,839 DEBUG Processing 232/738 atomic regions from SNP 69409 to 70009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,898 DEBUG Processing 232/709 atomic regions from SNP 69406 to 70006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,935 DEBUG Processing 320/753 atomic regions from SNP 95876 to 96476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,995 DEBUG Processing 619/860 atomic regions from SNP 185609 to 186209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,089 DEBUG Processing 233/738 atomic regions from SNP 69709 to 70309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,162 DEBUG Processing 233/709 atomic regions from SNP 69706 to 70306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,180 DEBUG Processing 321/753 atomic regions from SNP 96176 to 96776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,269 DEBUG Processing 620/860 atomic regions from SNP 185909 to 186509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,341 DEBUG Processing 234/738 atomic regions from SNP 70009 to 70609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,411 DEBUG Processing 234/709 atomic regions from SNP 70006 to 70606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,447 DEBUG Processing 322/753 atomic regions from SNP 96476 to 97076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,534 DEBUG Processing 621/860 atomic regions from SNP 186209 to 186809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,588 DEBUG Processing 235/738 atomic regions from SNP 70309 to 70909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,659 DEBUG Processing 235/709 atomic regions from SNP 70306 to 70906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,702 DEBUG Processing 323/753 atomic regions from SNP 96776 to 97376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,803 DEBUG Processing 622/860 atomic regions from SNP 186509 to 187109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,833 DEBUG Processing 236/738 atomic regions from SNP 70609 to 71209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,910 DEBUG Processing 236/709 atomic regions from SNP 70606 to 71206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,948 DEBUG Processing 324/753 atomic regions from SNP 97076 to 97676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,072 DEBUG Processing 623/860 atomic regions from SNP 186809 to 187409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,085 DEBUG Processing 237/738 atomic regions from SNP 70909 to 71509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,160 DEBUG Processing 237/709 atomic regions from SNP 70906 to 71506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,191 DEBUG Processing 325/753 atomic regions from SNP 97376 to 97976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,335 DEBUG Processing 238/738 atomic regions from SNP 71209 to 71809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,339 DEBUG Processing 624/860 atomic regions from SNP 187109 to 187709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,419 DEBUG Processing 238/709 atomic regions from SNP 71206 to 71806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,436 DEBUG Processing 326/753 atomic regions from SNP 97676 to 98276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,584 DEBUG Processing 239/738 atomic regions from SNP 71509 to 72109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,606 DEBUG Processing 625/860 atomic regions from SNP 187409 to 188009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,685 DEBUG Processing 327/753 atomic regions from SNP 97976 to 98576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,699 DEBUG Processing 239/709 atomic regions from SNP 71506 to 72106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,834 DEBUG Processing 240/738 atomic regions from SNP 71809 to 72409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,875 DEBUG Processing 626/860 atomic regions from SNP 187709 to 188309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,955 DEBUG Processing 240/709 atomic regions from SNP 71806 to 72406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,964 DEBUG Processing 328/753 atomic regions from SNP 98276 to 98876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,086 DEBUG Processing 241/738 atomic regions from SNP 72109 to 72709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,150 DEBUG Processing 627/860 atomic regions from SNP 188009 to 188609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,208 DEBUG Processing 241/709 atomic regions from SNP 72106 to 72706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,215 DEBUG Processing 329/753 atomic regions from SNP 98576 to 99176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,335 DEBUG Processing 242/738 atomic regions from SNP 72409 to 73009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,418 DEBUG Processing 628/860 atomic regions from SNP 188309 to 188909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,468 DEBUG Processing 242/709 atomic regions from SNP 72406 to 73006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,471 DEBUG Processing 330/753 atomic regions from SNP 98876 to 99476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,589 DEBUG Processing 243/738 atomic regions from SNP 72709 to 73309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,691 DEBUG Processing 629/860 atomic regions from SNP 188609 to 189209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,738 DEBUG Processing 243/709 atomic regions from SNP 72706 to 73306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,742 DEBUG Processing 331/753 atomic regions from SNP 99176 to 99776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,832 DEBUG Processing 244/738 atomic regions from SNP 73009 to 73609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,956 DEBUG Processing 630/860 atomic regions from SNP 188909 to 189509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,013 DEBUG Processing 244/709 atomic regions from SNP 73006 to 73606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,025 DEBUG Processing 332/753 atomic regions from SNP 99476 to 100076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,091 DEBUG Processing 245/738 atomic regions from SNP 73309 to 73909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,219 DEBUG Processing 631/860 atomic regions from SNP 189209 to 189809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,278 DEBUG Processing 245/709 atomic regions from SNP 73306 to 73906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,298 DEBUG Processing 333/753 atomic regions from SNP 99776 to 100376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,345 DEBUG Processing 246/738 atomic regions from SNP 73609 to 74209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,494 DEBUG Processing 632/860 atomic regions from SNP 189509 to 190109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,543 DEBUG Processing 246/709 atomic regions from SNP 73606 to 74206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,585 DEBUG Processing 334/753 atomic regions from SNP 100076 to 100676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,622 DEBUG Processing 247/738 atomic regions from SNP 73909 to 74509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,758 DEBUG Processing 633/860 atomic regions from SNP 189809 to 190409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,795 DEBUG Processing 247/709 atomic regions from SNP 73906 to 74506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,849 DEBUG Processing 335/753 atomic regions from SNP 100376 to 100976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,889 DEBUG Processing 248/738 atomic regions from SNP 74209 to 74809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,023 DEBUG Processing 634/860 atomic regions from SNP 190109 to 190709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,061 DEBUG Processing 248/709 atomic regions from SNP 74206 to 74806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,108 DEBUG Processing 336/753 atomic regions from SNP 100676 to 101276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,137 DEBUG Processing 249/738 atomic regions from SNP 74509 to 75109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,289 DEBUG Processing 635/860 atomic regions from SNP 190409 to 191009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,314 DEBUG Processing 249/709 atomic regions from SNP 74506 to 75106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,373 DEBUG Processing 337/753 atomic regions from SNP 100976 to 101576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,391 DEBUG Processing 250/738 atomic regions from SNP 74809 to 75409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,547 DEBUG Processing 636/860 atomic regions from SNP 190709 to 191309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,561 DEBUG Processing 250/709 atomic regions from SNP 74806 to 75406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,634 DEBUG Processing 338/753 atomic regions from SNP 101276 to 101876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,645 DEBUG Processing 251/738 atomic regions from SNP 75109 to 75709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,809 DEBUG Processing 637/860 atomic regions from SNP 191009 to 191609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,818 DEBUG Processing 251/709 atomic regions from SNP 75106 to 75706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,896 DEBUG Processing 252/738 atomic regions from SNP 75409 to 76009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,901 DEBUG Processing 339/753 atomic regions from SNP 101576 to 102176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,060 DEBUG Processing 252/709 atomic regions from SNP 75406 to 76006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,066 DEBUG Processing 638/860 atomic regions from SNP 191309 to 191909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,148 DEBUG Processing 253/738 atomic regions from SNP 75709 to 76309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,175 DEBUG Processing 340/753 atomic regions from SNP 101876 to 102476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,298 DEBUG Processing 253/709 atomic regions from SNP 75706 to 76306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,323 DEBUG Processing 639/860 atomic regions from SNP 191609 to 192209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,446 DEBUG Processing 254/738 atomic regions from SNP 76009 to 76609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,447 DEBUG Processing 341/753 atomic regions from SNP 102176 to 102776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,540 DEBUG Processing 254/709 atomic regions from SNP 76006 to 76606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,576 DEBUG Processing 640/860 atomic regions from SNP 191909 to 192509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,711 DEBUG Processing 255/738 atomic regions from SNP 76309 to 76909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,731 DEBUG Processing 342/753 atomic regions from SNP 102476 to 103076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,790 DEBUG Processing 255/709 atomic regions from SNP 76306 to 76906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,830 DEBUG Processing 641/860 atomic regions from SNP 192209 to 192809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,966 DEBUG Processing 256/738 atomic regions from SNP 76609 to 77209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,011 DEBUG Processing 343/753 atomic regions from SNP 102776 to 103376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,047 DEBUG Processing 256/709 atomic regions from SNP 76606 to 77206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,093 DEBUG Processing 642/860 atomic regions from SNP 192509 to 193109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,219 DEBUG Processing 257/738 atomic regions from SNP 76909 to 77509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,278 DEBUG Processing 344/753 atomic regions from SNP 103076 to 103676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,303 DEBUG Processing 257/709 atomic regions from SNP 76906 to 77506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,357 DEBUG Processing 643/860 atomic regions from SNP 192809 to 193409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,469 DEBUG Processing 258/738 atomic regions from SNP 77209 to 77809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,549 DEBUG Processing 345/753 atomic regions from SNP 103376 to 103976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,562 DEBUG Processing 258/709 atomic regions from SNP 77206 to 77806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,624 DEBUG Processing 644/860 atomic regions from SNP 193109 to 193709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,711 DEBUG Processing 259/738 atomic regions from SNP 77509 to 78109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,822 DEBUG Processing 259/709 atomic regions from SNP 77506 to 78106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,826 DEBUG Processing 346/753 atomic regions from SNP 103676 to 104276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,902 DEBUG Processing 645/860 atomic regions from SNP 193409 to 194009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,957 DEBUG Processing 260/738 atomic regions from SNP 77809 to 78409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,072 DEBUG Processing 260/709 atomic regions from SNP 77806 to 78406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,118 DEBUG Processing 347/753 atomic regions from SNP 103976 to 104576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,207 DEBUG Processing 646/860 atomic regions from SNP 193709 to 194309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,216 DEBUG Processing 261/738 atomic regions from SNP 78109 to 78709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,331 DEBUG Processing 261/709 atomic regions from SNP 78106 to 78706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,400 DEBUG Processing 348/753 atomic regions from SNP 104276 to 104876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,467 DEBUG Processing 262/738 atomic regions from SNP 78409 to 79009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,504 DEBUG Processing 647/860 atomic regions from SNP 194009 to 194609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,580 DEBUG Processing 262/709 atomic regions from SNP 78406 to 79006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,681 DEBUG Processing 349/753 atomic regions from SNP 104576 to 105176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,721 DEBUG Processing 263/738 atomic regions from SNP 78709 to 79309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,804 DEBUG Processing 648/860 atomic regions from SNP 194309 to 194909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,828 DEBUG Processing 263/709 atomic regions from SNP 78706 to 79306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,954 DEBUG Processing 350/753 atomic regions from SNP 104876 to 105476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,979 DEBUG Processing 264/738 atomic regions from SNP 79009 to 79609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,077 DEBUG Processing 264/709 atomic regions from SNP 79006 to 79606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,115 DEBUG Processing 649/860 atomic regions from SNP 194609 to 195209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,237 DEBUG Processing 351/753 atomic regions from SNP 105176 to 105776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,237 DEBUG Processing 265/738 atomic regions from SNP 79309 to 79909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,330 DEBUG Processing 265/709 atomic regions from SNP 79306 to 79906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,418 DEBUG Processing 650/860 atomic regions from SNP 194909 to 195509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,488 DEBUG Processing 266/738 atomic regions from SNP 79609 to 80209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,508 DEBUG Processing 352/753 atomic regions from SNP 105476 to 106076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,584 DEBUG Processing 266/709 atomic regions from SNP 79606 to 80206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,721 DEBUG Processing 651/860 atomic regions from SNP 195209 to 195809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,743 DEBUG Processing 267/738 atomic regions from SNP 79909 to 80509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,784 DEBUG Processing 353/753 atomic regions from SNP 105776 to 106376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,838 DEBUG Processing 267/709 atomic regions from SNP 79906 to 80506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,004 DEBUG Processing 652/860 atomic regions from SNP 195509 to 196109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,013 DEBUG Processing 268/738 atomic regions from SNP 80209 to 80809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,060 DEBUG Processing 354/753 atomic regions from SNP 106076 to 106676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,107 DEBUG Processing 268/709 atomic regions from SNP 80206 to 80806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,266 DEBUG Processing 269/738 atomic regions from SNP 80509 to 81109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,275 DEBUG Processing 653/860 atomic regions from SNP 195809 to 196409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,315 DEBUG Processing 355/753 atomic regions from SNP 106376 to 106976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,368 DEBUG Processing 269/709 atomic regions from SNP 80506 to 81106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,515 DEBUG Processing 270/738 atomic regions from SNP 80809 to 81409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,542 DEBUG Processing 654/860 atomic regions from SNP 196109 to 196709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,567 DEBUG Processing 356/753 atomic regions from SNP 106676 to 107276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,627 DEBUG Processing 270/709 atomic regions from SNP 80806 to 81406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,765 DEBUG Processing 271/738 atomic regions from SNP 81109 to 81709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,810 DEBUG Processing 357/753 atomic regions from SNP 106976 to 107576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,813 DEBUG Processing 655/860 atomic regions from SNP 196409 to 197009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,879 DEBUG Processing 271/709 atomic regions from SNP 81106 to 81706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,016 DEBUG Processing 272/738 atomic regions from SNP 81409 to 82009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,062 DEBUG Processing 358/753 atomic regions from SNP 107276 to 107876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,089 DEBUG Processing 656/860 atomic regions from SNP 196709 to 197309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,127 DEBUG Processing 272/709 atomic regions from SNP 81406 to 82006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,271 DEBUG Processing 273/738 atomic regions from SNP 81709 to 82309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,314 DEBUG Processing 359/753 atomic regions from SNP 107576 to 108176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,372 DEBUG Processing 657/860 atomic regions from SNP 197009 to 197609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,377 DEBUG Processing 273/709 atomic regions from SNP 81706 to 82306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,523 DEBUG Processing 274/738 atomic regions from SNP 82009 to 82609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,571 DEBUG Processing 360/753 atomic regions from SNP 107876 to 108476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,632 DEBUG Processing 274/709 atomic regions from SNP 82006 to 82606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,660 DEBUG Processing 658/860 atomic regions from SNP 197309 to 197909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,776 DEBUG Processing 275/738 atomic regions from SNP 82309 to 82909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,830 DEBUG Processing 361/753 atomic regions from SNP 108176 to 108776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,893 DEBUG Processing 275/709 atomic regions from SNP 82306 to 82906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,933 DEBUG Processing 659/860 atomic regions from SNP 197609 to 198209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,024 DEBUG Processing 276/738 atomic regions from SNP 82609 to 83209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,083 DEBUG Processing 362/753 atomic regions from SNP 108476 to 109076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,155 DEBUG Processing 276/709 atomic regions from SNP 82606 to 83206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,207 DEBUG Processing 660/860 atomic regions from SNP 197909 to 198509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,275 DEBUG Processing 277/738 atomic regions from SNP 82909 to 83509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,333 DEBUG Processing 363/753 atomic regions from SNP 108776 to 109376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,438 DEBUG Processing 277/709 atomic regions from SNP 82906 to 83506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,492 DEBUG Processing 661/860 atomic regions from SNP 198209 to 198809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,525 DEBUG Processing 278/738 atomic regions from SNP 83209 to 83809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,583 DEBUG Processing 364/753 atomic regions from SNP 109076 to 109676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,732 DEBUG Processing 278/709 atomic regions from SNP 83206 to 83806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,779 DEBUG Processing 279/738 atomic regions from SNP 83509 to 84109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,800 DEBUG Processing 662/860 atomic regions from SNP 198509 to 199109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,835 DEBUG Processing 365/753 atomic regions from SNP 109376 to 109976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,992 DEBUG Processing 279/709 atomic regions from SNP 83506 to 84106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,037 DEBUG Processing 280/738 atomic regions from SNP 83809 to 84409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,089 DEBUG Processing 366/753 atomic regions from SNP 109676 to 110276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,107 DEBUG Processing 663/860 atomic regions from SNP 198809 to 199409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,246 DEBUG Processing 280/709 atomic regions from SNP 83806 to 84406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,295 DEBUG Processing 281/738 atomic regions from SNP 84109 to 84709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,344 DEBUG Processing 367/753 atomic regions from SNP 109976 to 110576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,411 DEBUG Processing 664/860 atomic regions from SNP 199109 to 199709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,501 DEBUG Processing 281/709 atomic regions from SNP 84106 to 84706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,552 DEBUG Processing 282/738 atomic regions from SNP 84409 to 85009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,601 DEBUG Processing 368/753 atomic regions from SNP 110276 to 110876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,691 DEBUG Processing 665/860 atomic regions from SNP 199409 to 200009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,759 DEBUG Processing 282/709 atomic regions from SNP 84406 to 85006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,813 DEBUG Processing 283/738 atomic regions from SNP 84709 to 85309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,856 DEBUG Processing 369/753 atomic regions from SNP 110576 to 111176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,965 DEBUG Processing 666/860 atomic regions from SNP 199709 to 200309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,024 DEBUG Processing 283/709 atomic regions from SNP 84706 to 85306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,072 DEBUG Processing 284/738 atomic regions from SNP 85009 to 85609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,105 DEBUG Processing 370/753 atomic regions from SNP 110876 to 111476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,235 DEBUG Processing 667/860 atomic regions from SNP 200009 to 200609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,281 DEBUG Processing 284/709 atomic regions from SNP 85006 to 85606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,329 DEBUG Processing 285/738 atomic regions from SNP 85309 to 85909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,359 DEBUG Processing 371/753 atomic regions from SNP 111176 to 111776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,503 DEBUG Processing 668/860 atomic regions from SNP 200309 to 200909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,538 DEBUG Processing 285/709 atomic regions from SNP 85306 to 85906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,586 DEBUG Processing 286/738 atomic regions from SNP 85609 to 86209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,614 DEBUG Processing 372/753 atomic regions from SNP 111476 to 112076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,790 DEBUG Processing 669/860 atomic regions from SNP 200609 to 201209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,811 DEBUG Processing 286/709 atomic regions from SNP 85606 to 86206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,857 DEBUG Processing 287/738 atomic regions from SNP 85909 to 86509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,880 DEBUG Processing 373/753 atomic regions from SNP 111776 to 112376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,066 DEBUG Processing 670/860 atomic regions from SNP 200909 to 201509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,070 DEBUG Processing 287/709 atomic regions from SNP 85906 to 86506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,119 DEBUG Processing 288/738 atomic regions from SNP 86209 to 86809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,137 DEBUG Processing 374/753 atomic regions from SNP 112076 to 112676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,336 DEBUG Processing 288/709 atomic regions from SNP 86206 to 86806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,351 DEBUG Processing 671/860 atomic regions from SNP 201209 to 201809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,396 DEBUG Processing 289/738 atomic regions from SNP 86509 to 87109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,402 DEBUG Processing 375/753 atomic regions from SNP 112376 to 112976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,609 DEBUG Processing 289/709 atomic regions from SNP 86506 to 87106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,641 DEBUG Processing 672/860 atomic regions from SNP 201509 to 202109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,663 DEBUG Processing 290/738 atomic regions from SNP 86809 to 87409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,675 DEBUG Processing 376/753 atomic regions from SNP 112676 to 113276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,874 DEBUG Processing 290/709 atomic regions from SNP 86806 to 87406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,918 DEBUG Processing 673/860 atomic regions from SNP 201809 to 202409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,923 DEBUG Processing 291/738 atomic regions from SNP 87109 to 87709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,942 DEBUG Processing 377/753 atomic regions from SNP 112976 to 113576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,149 DEBUG Processing 291/709 atomic regions from SNP 87106 to 87706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,183 DEBUG Processing 292/738 atomic regions from SNP 87409 to 88009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,191 DEBUG Processing 674/860 atomic regions from SNP 202109 to 202709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,205 DEBUG Processing 378/753 atomic regions from SNP 113276 to 113876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,412 DEBUG Processing 292/709 atomic regions from SNP 87406 to 88006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,442 DEBUG Processing 293/738 atomic regions from SNP 87709 to 88309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,462 DEBUG Processing 379/753 atomic regions from SNP 113576 to 114176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,491 DEBUG Processing 675/860 atomic regions from SNP 202409 to 203009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,671 DEBUG Processing 293/709 atomic regions from SNP 87706 to 88306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,704 DEBUG Processing 294/738 atomic regions from SNP 88009 to 88609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,719 DEBUG Processing 380/753 atomic regions from SNP 113876 to 114476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,786 DEBUG Processing 676/860 atomic regions from SNP 202709 to 203309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,928 DEBUG Processing 294/709 atomic regions from SNP 88006 to 88606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,960 DEBUG Processing 295/738 atomic regions from SNP 88309 to 88909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,974 DEBUG Processing 381/753 atomic regions from SNP 114176 to 114776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,053 DEBUG Processing 677/860 atomic regions from SNP 203009 to 203609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,182 DEBUG Processing 295/709 atomic regions from SNP 88306 to 88906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,218 DEBUG Processing 296/738 atomic regions from SNP 88609 to 89209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,238 DEBUG Processing 382/753 atomic regions from SNP 114476 to 115076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,320 DEBUG Processing 678/860 atomic regions from SNP 203309 to 203909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,442 DEBUG Processing 296/709 atomic regions from SNP 88606 to 89206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,474 DEBUG Processing 297/738 atomic regions from SNP 88909 to 89509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,493 DEBUG Processing 383/753 atomic regions from SNP 114776 to 115376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,583 DEBUG Processing 679/860 atomic regions from SNP 203609 to 204209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,696 DEBUG Processing 297/709 atomic regions from SNP 88906 to 89506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,729 DEBUG Processing 298/738 atomic regions from SNP 89209 to 89809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,747 DEBUG Processing 384/753 atomic regions from SNP 115076 to 115676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,850 DEBUG Processing 680/860 atomic regions from SNP 203909 to 204509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,953 DEBUG Processing 298/709 atomic regions from SNP 89206 to 89806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,987 DEBUG Processing 299/738 atomic regions from SNP 89509 to 90109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,013 DEBUG Processing 385/753 atomic regions from SNP 115376 to 115976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,115 DEBUG Processing 681/860 atomic regions from SNP 204209 to 204809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,208 DEBUG Processing 299/709 atomic regions from SNP 89506 to 90106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,243 DEBUG Processing 300/738 atomic regions from SNP 89809 to 90409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,265 DEBUG Processing 386/753 atomic regions from SNP 115676 to 116276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,377 DEBUG Processing 682/860 atomic regions from SNP 204509 to 205109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,463 DEBUG Processing 300/709 atomic regions from SNP 89806 to 90406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,502 DEBUG Processing 301/738 atomic regions from SNP 90109 to 90709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,521 DEBUG Processing 387/753 atomic regions from SNP 115976 to 116576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,644 DEBUG Processing 683/860 atomic regions from SNP 204809 to 205409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,713 DEBUG Processing 301/709 atomic regions from SNP 90106 to 90706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,756 DEBUG Processing 302/738 atomic regions from SNP 90409 to 91009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,782 DEBUG Processing 388/753 atomic regions from SNP 116276 to 116876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,920 DEBUG Processing 684/860 atomic regions from SNP 205109 to 205709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,964 DEBUG Processing 302/709 atomic regions from SNP 90406 to 91006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,011 DEBUG Processing 303/738 atomic regions from SNP 90709 to 91309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,038 DEBUG Processing 389/753 atomic regions from SNP 116576 to 117176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,216 DEBUG Processing 685/860 atomic regions from SNP 205409 to 206009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,220 DEBUG Processing 303/709 atomic regions from SNP 90706 to 91306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,275 DEBUG Processing 304/738 atomic regions from SNP 91009 to 91609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,299 DEBUG Processing 390/753 atomic regions from SNP 116876 to 117476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,464 DEBUG Processing 304/709 atomic regions from SNP 91006 to 91606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,500 DEBUG Processing 686/860 atomic regions from SNP 205709 to 206309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,527 DEBUG Processing 305/738 atomic regions from SNP 91309 to 91909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,550 DEBUG Processing 391/753 atomic regions from SNP 117176 to 117776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,702 DEBUG Processing 305/709 atomic regions from SNP 91306 to 91906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,762 DEBUG Processing 687/860 atomic regions from SNP 206009 to 206609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,780 DEBUG Processing 306/738 atomic regions from SNP 91609 to 92209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,813 DEBUG Processing 392/753 atomic regions from SNP 117476 to 118076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,945 DEBUG Processing 306/709 atomic regions from SNP 91606 to 92206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,029 DEBUG Processing 688/860 atomic regions from SNP 206309 to 206909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,034 DEBUG Processing 307/738 atomic regions from SNP 91909 to 92509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,082 DEBUG Processing 393/753 atomic regions from SNP 117776 to 118376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,187 DEBUG Processing 307/709 atomic regions from SNP 91906 to 92506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,288 DEBUG Processing 308/738 atomic regions from SNP 92209 to 92809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,315 DEBUG Processing 689/860 atomic regions from SNP 206609 to 207209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,353 DEBUG Processing 394/753 atomic regions from SNP 118076 to 118676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,428 DEBUG Processing 308/709 atomic regions from SNP 92206 to 92806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,566 DEBUG Processing 309/738 atomic regions from SNP 92509 to 93109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,611 DEBUG Processing 395/753 atomic regions from SNP 118376 to 118976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,615 DEBUG Processing 690/860 atomic regions from SNP 206909 to 207509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,684 DEBUG Processing 309/709 atomic regions from SNP 92506 to 93106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,822 DEBUG Processing 310/738 atomic regions from SNP 92809 to 93409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,868 DEBUG Processing 396/753 atomic regions from SNP 118676 to 119276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,913 DEBUG Processing 691/860 atomic regions from SNP 207209 to 207809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,940 DEBUG Processing 310/709 atomic regions from SNP 92806 to 93406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,071 DEBUG Processing 311/738 atomic regions from SNP 93109 to 93709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,121 DEBUG Processing 397/753 atomic regions from SNP 118976 to 119576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,202 DEBUG Processing 311/709 atomic regions from SNP 93106 to 93706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,206 DEBUG Processing 692/860 atomic regions from SNP 207509 to 208109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,317 DEBUG Processing 312/738 atomic regions from SNP 93409 to 94009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,372 DEBUG Processing 398/753 atomic regions from SNP 119276 to 119876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,481 DEBUG Processing 312/709 atomic regions from SNP 93406 to 94006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,493 DEBUG Processing 693/860 atomic regions from SNP 207809 to 208409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,574 DEBUG Processing 313/738 atomic regions from SNP 93709 to 94309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,620 DEBUG Processing 399/753 atomic regions from SNP 119576 to 120176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,767 DEBUG Processing 313/709 atomic regions from SNP 93706 to 94306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,784 DEBUG Processing 694/860 atomic regions from SNP 208109 to 208709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,826 DEBUG Processing 314/738 atomic regions from SNP 94009 to 94609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,871 DEBUG Processing 400/753 atomic regions from SNP 119876 to 120476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,034 DEBUG Processing 314/709 atomic regions from SNP 94006 to 94606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,082 DEBUG Processing 315/738 atomic regions from SNP 94309 to 94909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,093 DEBUG Processing 695/860 atomic regions from SNP 208409 to 209009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,154 DEBUG Processing 401/753 atomic regions from SNP 120176 to 120776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,307 DEBUG Processing 315/709 atomic regions from SNP 94306 to 94906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,339 DEBUG Processing 316/738 atomic regions from SNP 94609 to 95209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,396 DEBUG Processing 696/860 atomic regions from SNP 208709 to 209309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,413 DEBUG Processing 402/753 atomic regions from SNP 120476 to 121076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,567 DEBUG Processing 316/709 atomic regions from SNP 94606 to 95206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,586 DEBUG Processing 317/738 atomic regions from SNP 94909 to 95509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,665 DEBUG Processing 403/753 atomic regions from SNP 120776 to 121376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,677 DEBUG Processing 697/860 atomic regions from SNP 209009 to 209609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,830 DEBUG Processing 318/738 atomic regions from SNP 95209 to 95809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,848 DEBUG Processing 317/709 atomic regions from SNP 94906 to 95506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,919 DEBUG Processing 404/753 atomic regions from SNP 121076 to 121676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,948 DEBUG Processing 698/860 atomic regions from SNP 209309 to 209909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,065 DEBUG Processing 319/738 atomic regions from SNP 95509 to 96109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,130 DEBUG Processing 318/709 atomic regions from SNP 95206 to 95806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,172 DEBUG Processing 405/753 atomic regions from SNP 121376 to 121976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,219 DEBUG Processing 699/860 atomic regions from SNP 209609 to 210209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,303 DEBUG Processing 320/738 atomic regions from SNP 95809 to 96409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,414 DEBUG Processing 319/709 atomic regions from SNP 95506 to 96106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,449 DEBUG Processing 406/753 atomic regions from SNP 121676 to 122276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,491 DEBUG Processing 700/860 atomic regions from SNP 209909 to 210509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,548 DEBUG Processing 321/738 atomic regions from SNP 96109 to 96709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,687 DEBUG Processing 320/709 atomic regions from SNP 95806 to 96406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,706 DEBUG Processing 407/753 atomic regions from SNP 121976 to 122576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,768 DEBUG Processing 701/860 atomic regions from SNP 210209 to 210809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,799 DEBUG Processing 322/738 atomic regions from SNP 96409 to 97009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,957 DEBUG Processing 321/709 atomic regions from SNP 96106 to 96706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,966 DEBUG Processing 408/753 atomic regions from SNP 122276 to 122876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,052 DEBUG Processing 323/738 atomic regions from SNP 96709 to 97309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,063 DEBUG Processing 702/860 atomic regions from SNP 210509 to 211109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,217 DEBUG Processing 409/753 atomic regions from SNP 122576 to 123176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,230 DEBUG Processing 322/709 atomic regions from SNP 96406 to 97006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,305 DEBUG Processing 324/738 atomic regions from SNP 97009 to 97609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,353 DEBUG Processing 703/860 atomic regions from SNP 210809 to 211409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,466 DEBUG Processing 410/753 atomic regions from SNP 122876 to 123476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,509 DEBUG Processing 323/709 atomic regions from SNP 96706 to 97306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,558 DEBUG Processing 325/738 atomic regions from SNP 97309 to 97909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,632 DEBUG Processing 704/860 atomic regions from SNP 211109 to 211709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,711 DEBUG Processing 411/753 atomic regions from SNP 123176 to 123776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,781 DEBUG Processing 324/709 atomic regions from SNP 97006 to 97606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,816 DEBUG Processing 326/738 atomic regions from SNP 97609 to 98209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,929 DEBUG Processing 705/860 atomic regions from SNP 211409 to 212009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,960 DEBUG Processing 412/753 atomic regions from SNP 123476 to 124076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,042 DEBUG Processing 325/709 atomic regions from SNP 97306 to 97906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,075 DEBUG Processing 327/738 atomic regions from SNP 97909 to 98509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,202 DEBUG Processing 413/753 atomic regions from SNP 123776 to 124376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,219 DEBUG Processing 706/860 atomic regions from SNP 211709 to 212309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,314 DEBUG Processing 326/709 atomic regions from SNP 97606 to 98206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,336 DEBUG Processing 328/738 atomic regions from SNP 98209 to 98809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,443 DEBUG Processing 414/753 atomic regions from SNP 124076 to 124676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,475 DEBUG Processing 707/860 atomic regions from SNP 212009 to 212609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,573 DEBUG Processing 327/709 atomic regions from SNP 97906 to 98506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,612 DEBUG Processing 329/738 atomic regions from SNP 98509 to 99109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,679 DEBUG Processing 415/753 atomic regions from SNP 124376 to 124976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,728 DEBUG Processing 708/860 atomic regions from SNP 212309 to 212909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,833 DEBUG Processing 328/709 atomic regions from SNP 98206 to 98806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,870 DEBUG Processing 330/738 atomic regions from SNP 98809 to 99409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,923 DEBUG Processing 416/753 atomic regions from SNP 124676 to 125276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,983 DEBUG Processing 709/860 atomic regions from SNP 212609 to 213209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,087 DEBUG Processing 329/709 atomic regions from SNP 98506 to 99106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,127 DEBUG Processing 331/738 atomic regions from SNP 99109 to 99709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,171 DEBUG Processing 417/753 atomic regions from SNP 124976 to 125576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,242 DEBUG Processing 710/860 atomic regions from SNP 212909 to 213509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,339 DEBUG Processing 330/709 atomic regions from SNP 98806 to 99406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,385 DEBUG Processing 332/738 atomic regions from SNP 99409 to 100009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,424 DEBUG Processing 418/753 atomic regions from SNP 125276 to 125876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,502 DEBUG Processing 711/860 atomic regions from SNP 213209 to 213809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,591 DEBUG Processing 331/709 atomic regions from SNP 99106 to 99706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,637 DEBUG Processing 333/738 atomic regions from SNP 99709 to 100309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,679 DEBUG Processing 419/753 atomic regions from SNP 125576 to 126176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,765 DEBUG Processing 712/860 atomic regions from SNP 213509 to 214109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,844 DEBUG Processing 332/709 atomic regions from SNP 99406 to 100006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,895 DEBUG Processing 334/738 atomic regions from SNP 100009 to 100609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,937 DEBUG Processing 420/753 atomic regions from SNP 125876 to 126476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,057 DEBUG Processing 713/860 atomic regions from SNP 213809 to 214409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,107 DEBUG Processing 333/709 atomic regions from SNP 99706 to 100306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,148 DEBUG Processing 335/738 atomic regions from SNP 100309 to 100909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,187 DEBUG Processing 421/753 atomic regions from SNP 126176 to 126776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,331 DEBUG Processing 714/860 atomic regions from SNP 214109 to 214709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,355 DEBUG Processing 334/709 atomic regions from SNP 100006 to 100606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,397 DEBUG Processing 336/738 atomic regions from SNP 100609 to 101209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,434 DEBUG Processing 422/753 atomic regions from SNP 126476 to 127076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,609 DEBUG Processing 335/709 atomic regions from SNP 100306 to 100906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,633 DEBUG Processing 715/860 atomic regions from SNP 214409 to 215009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,650 DEBUG Processing 337/738 atomic regions from SNP 100909 to 101509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,684 DEBUG Processing 423/753 atomic regions from SNP 126776 to 127376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,861 DEBUG Processing 336/709 atomic regions from SNP 100606 to 101206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,901 DEBUG Processing 338/738 atomic regions from SNP 101209 to 101809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,934 DEBUG Processing 424/753 atomic regions from SNP 127076 to 127676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,940 DEBUG Processing 716/860 atomic regions from SNP 214709 to 215309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,110 DEBUG Processing 337/709 atomic regions from SNP 100906 to 101506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,154 DEBUG Processing 339/738 atomic regions from SNP 101509 to 102109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,189 DEBUG Processing 425/753 atomic regions from SNP 127376 to 127976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,249 DEBUG Processing 717/860 atomic regions from SNP 215009 to 215609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,362 DEBUG Processing 338/709 atomic regions from SNP 101206 to 101806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,414 DEBUG Processing 340/738 atomic regions from SNP 101809 to 102409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,470 DEBUG Processing 426/753 atomic regions from SNP 127676 to 128276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,556 DEBUG Processing 718/860 atomic regions from SNP 215309 to 215909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,616 DEBUG Processing 339/709 atomic regions from SNP 101506 to 102106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,666 DEBUG Processing 341/738 atomic regions from SNP 102109 to 102709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,750 DEBUG Processing 427/753 atomic regions from SNP 127976 to 128576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,842 DEBUG Processing 719/860 atomic regions from SNP 215609 to 216209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,899 DEBUG Processing 340/709 atomic regions from SNP 101806 to 102406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,914 DEBUG Processing 342/738 atomic regions from SNP 102409 to 103009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,031 DEBUG Processing 428/753 atomic regions from SNP 128276 to 128876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,133 DEBUG Processing 720/860 atomic regions from SNP 215909 to 216509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,164 DEBUG Processing 343/738 atomic regions from SNP 102709 to 103309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,180 DEBUG Processing 341/709 atomic regions from SNP 102106 to 102706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,294 DEBUG Processing 429/753 atomic regions from SNP 128576 to 129176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,403 DEBUG Processing 721/860 atomic regions from SNP 216209 to 216809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,416 DEBUG Processing 344/738 atomic regions from SNP 103009 to 103609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,434 DEBUG Processing 342/709 atomic regions from SNP 102406 to 103006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,550 DEBUG Processing 430/753 atomic regions from SNP 128876 to 129476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,668 DEBUG Processing 345/738 atomic regions from SNP 103309 to 103909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,675 DEBUG Processing 722/860 atomic regions from SNP 216509 to 217109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,689 DEBUG Processing 343/709 atomic regions from SNP 102706 to 103306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,822 DEBUG Processing 431/753 atomic regions from SNP 129176 to 129776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,936 DEBUG Processing 346/738 atomic regions from SNP 103609 to 104209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,961 DEBUG Processing 723/860 atomic regions from SNP 216809 to 217409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,963 DEBUG Processing 344/709 atomic regions from SNP 103006 to 103606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,160 DEBUG Processing 432/753 atomic regions from SNP 129476 to 130076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,213 DEBUG Processing 347/738 atomic regions from SNP 103909 to 104509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,253 DEBUG Processing 345/709 atomic regions from SNP 103306 to 103906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,253 DEBUG Processing 724/860 atomic regions from SNP 217109 to 217709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,413 DEBUG Processing 433/753 atomic regions from SNP 129776 to 130376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,462 DEBUG Processing 348/738 atomic regions from SNP 104209 to 104809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,507 DEBUG Processing 346/709 atomic regions from SNP 103606 to 104206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,520 DEBUG Processing 725/860 atomic regions from SNP 217409 to 218009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,675 DEBUG Processing 434/753 atomic regions from SNP 130076 to 130676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,721 DEBUG Processing 349/738 atomic regions from SNP 104509 to 105109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,772 DEBUG Processing 347/709 atomic regions from SNP 103906 to 104506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,802 DEBUG Processing 726/860 atomic regions from SNP 217709 to 218309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,946 DEBUG Processing 435/753 atomic regions from SNP 130376 to 130976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,977 DEBUG Processing 350/738 atomic regions from SNP 104809 to 105409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,033 DEBUG Processing 348/709 atomic regions from SNP 104206 to 104806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,076 DEBUG Processing 727/860 atomic regions from SNP 218009 to 218609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,226 DEBUG Processing 436/753 atomic regions from SNP 130676 to 131276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,236 DEBUG Processing 351/738 atomic regions from SNP 105109 to 105709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,292 DEBUG Processing 349/709 atomic regions from SNP 104506 to 105106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,355 DEBUG Processing 728/860 atomic regions from SNP 218309 to 218909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,488 DEBUG Processing 352/738 atomic regions from SNP 105409 to 106009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,495 DEBUG Processing 437/753 atomic regions from SNP 130976 to 131576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,551 DEBUG Processing 350/709 atomic regions from SNP 104806 to 105406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,630 DEBUG Processing 729/860 atomic regions from SNP 218609 to 219209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,744 DEBUG Processing 353/738 atomic regions from SNP 105709 to 106309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,764 DEBUG Processing 438/753 atomic regions from SNP 131276 to 131876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,811 DEBUG Processing 351/709 atomic regions from SNP 105106 to 105706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,900 DEBUG Processing 730/860 atomic regions from SNP 218909 to 219509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,007 DEBUG Processing 354/738 atomic regions from SNP 106009 to 106609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,057 DEBUG Processing 439/753 atomic regions from SNP 131576 to 132176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,076 DEBUG Processing 352/709 atomic regions from SNP 105406 to 106006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,182 DEBUG Processing 731/860 atomic regions from SNP 219209 to 219809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,264 DEBUG Processing 355/738 atomic regions from SNP 106309 to 106909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,319 DEBUG Processing 440/753 atomic regions from SNP 131876 to 132476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,335 DEBUG Processing 353/709 atomic regions from SNP 105706 to 106306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,462 DEBUG Processing 732/860 atomic regions from SNP 219509 to 220109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,511 DEBUG Processing 356/738 atomic regions from SNP 106609 to 107209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,593 DEBUG Processing 354/709 atomic regions from SNP 106006 to 106606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,602 DEBUG Processing 441/753 atomic regions from SNP 132176 to 132776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,748 DEBUG Processing 733/860 atomic regions from SNP 219809 to 220409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,757 DEBUG Processing 357/738 atomic regions from SNP 106909 to 107509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,865 DEBUG Processing 355/709 atomic regions from SNP 106306 to 106906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,899 DEBUG Processing 442/753 atomic regions from SNP 132476 to 133076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,005 DEBUG Processing 358/738 atomic regions from SNP 107209 to 107809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,011 DEBUG Processing 734/860 atomic regions from SNP 220109 to 220709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,122 DEBUG Processing 356/709 atomic regions from SNP 106606 to 107206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,183 DEBUG Processing 443/753 atomic regions from SNP 132776 to 133376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,250 DEBUG Processing 359/738 atomic regions from SNP 107509 to 108109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,279 DEBUG Processing 735/860 atomic regions from SNP 220409 to 221009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,385 DEBUG Processing 357/709 atomic regions from SNP 106906 to 107506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,462 DEBUG Processing 444/753 atomic regions from SNP 133076 to 133676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,496 DEBUG Processing 360/738 atomic regions from SNP 107809 to 108409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,545 DEBUG Processing 736/860 atomic regions from SNP 220709 to 221309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,638 DEBUG Processing 358/709 atomic regions from SNP 107206 to 107806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,714 DEBUG Processing 445/753 atomic regions from SNP 133376 to 133976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,746 DEBUG Processing 361/738 atomic regions from SNP 108109 to 108709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,834 DEBUG Processing 737/860 atomic regions from SNP 221009 to 221609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,891 DEBUG Processing 359/709 atomic regions from SNP 107506 to 108106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,963 DEBUG Processing 446/753 atomic regions from SNP 133676 to 134276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,992 DEBUG Processing 362/738 atomic regions from SNP 108409 to 109009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,141 DEBUG Processing 738/860 atomic regions from SNP 221309 to 221909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,149 DEBUG Processing 360/709 atomic regions from SNP 107806 to 108406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,214 DEBUG Processing 447/753 atomic regions from SNP 133976 to 134576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,241 DEBUG Processing 363/738 atomic regions from SNP 108709 to 109309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,413 DEBUG Processing 361/709 atomic regions from SNP 108106 to 108706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,423 DEBUG Processing 739/860 atomic regions from SNP 221609 to 222209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,469 DEBUG Processing 448/753 atomic regions from SNP 134276 to 134876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,488 DEBUG Processing 364/738 atomic regions from SNP 109009 to 109609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,678 DEBUG Processing 362/709 atomic regions from SNP 108406 to 109006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,718 DEBUG Processing 740/860 atomic regions from SNP 221909 to 222509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,724 DEBUG Processing 449/753 atomic regions from SNP 134576 to 135176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,739 DEBUG Processing 365/738 atomic regions from SNP 109309 to 109909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,941 DEBUG Processing 363/709 atomic regions from SNP 108706 to 109306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,995 DEBUG Processing 366/738 atomic regions from SNP 109609 to 110209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,000 DEBUG Processing 450/753 atomic regions from SNP 134876 to 135476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,012 DEBUG Processing 741/860 atomic regions from SNP 222209 to 222809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,201 DEBUG Processing 364/709 atomic regions from SNP 109006 to 109606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,253 DEBUG Processing 367/738 atomic regions from SNP 109909 to 110509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,284 DEBUG Processing 742/860 atomic regions from SNP 222509 to 223109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,296 DEBUG Processing 451/753 atomic regions from SNP 135176 to 135776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,452 DEBUG Processing 365/709 atomic regions from SNP 109306 to 109906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,508 DEBUG Processing 368/738 atomic regions from SNP 110209 to 110809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,557 DEBUG Processing 743/860 atomic regions from SNP 222809 to 223409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,588 DEBUG Processing 452/753 atomic regions from SNP 135476 to 136076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,701 DEBUG Processing 366/709 atomic regions from SNP 109606 to 110206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,760 DEBUG Processing 369/738 atomic regions from SNP 110509 to 111109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,827 DEBUG Processing 744/860 atomic regions from SNP 223109 to 223709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,886 DEBUG Processing 453/753 atomic regions from SNP 135776 to 136376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,953 DEBUG Processing 367/709 atomic regions from SNP 109906 to 110506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,005 DEBUG Processing 370/738 atomic regions from SNP 110809 to 111409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,095 DEBUG Processing 745/860 atomic regions from SNP 223409 to 224009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,177 DEBUG Processing 454/753 atomic regions from SNP 136076 to 136676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,209 DEBUG Processing 368/709 atomic regions from SNP 110206 to 110806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,252 DEBUG Processing 371/738 atomic regions from SNP 111109 to 111709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,365 DEBUG Processing 746/860 atomic regions from SNP 223709 to 224309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,468 DEBUG Processing 369/709 atomic regions from SNP 110506 to 111106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,468 DEBUG Processing 455/753 atomic regions from SNP 136376 to 136976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,503 DEBUG Processing 372/738 atomic regions from SNP 111409 to 112009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,625 DEBUG Processing 747/860 atomic regions from SNP 224009 to 224609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,724 DEBUG Processing 370/709 atomic regions from SNP 110806 to 111406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,756 DEBUG Processing 373/738 atomic regions from SNP 111709 to 112309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,759 DEBUG Processing 456/753 atomic regions from SNP 136676 to 137276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,883 DEBUG Processing 748/860 atomic regions from SNP 224309 to 224909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,989 DEBUG Processing 371/709 atomic regions from SNP 111106 to 111706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,018 DEBUG Processing 374/738 atomic regions from SNP 112009 to 112609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,051 DEBUG Processing 457/753 atomic regions from SNP 136976 to 137576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,146 DEBUG Processing 749/860 atomic regions from SNP 224609 to 225209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,251 DEBUG Processing 372/709 atomic regions from SNP 111406 to 112006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,275 DEBUG Processing 375/738 atomic regions from SNP 112309 to 112909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,344 DEBUG Processing 458/753 atomic regions from SNP 137276 to 137876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,410 DEBUG Processing 750/860 atomic regions from SNP 224909 to 225509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,508 DEBUG Processing 373/709 atomic regions from SNP 111706 to 112306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,528 DEBUG Processing 376/738 atomic regions from SNP 112609 to 113209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,637 DEBUG Processing 459/753 atomic regions from SNP 137576 to 138176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,674 DEBUG Processing 751/860 atomic regions from SNP 225209 to 225809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,758 DEBUG Processing 374/709 atomic regions from SNP 112006 to 112606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,778 DEBUG Processing 377/738 atomic regions from SNP 112909 to 113509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,920 DEBUG Processing 460/753 atomic regions from SNP 137876 to 138476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,944 DEBUG Processing 752/860 atomic regions from SNP 225509 to 226109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,017 DEBUG Processing 375/709 atomic regions from SNP 112306 to 112906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,037 DEBUG Processing 378/738 atomic regions from SNP 113209 to 113809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,208 DEBUG Processing 461/753 atomic regions from SNP 138176 to 138776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,217 DEBUG Processing 753/860 atomic regions from SNP 225809 to 226409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,298 DEBUG Processing 376/709 atomic regions from SNP 112606 to 113206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,323 DEBUG Processing 379/738 atomic regions from SNP 113509 to 114109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,500 DEBUG Processing 462/753 atomic regions from SNP 138476 to 139076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,501 DEBUG Processing 754/860 atomic regions from SNP 226109 to 226709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,550 DEBUG Processing 377/709 atomic regions from SNP 112906 to 113506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,600 DEBUG Processing 380/738 atomic regions from SNP 113809 to 114409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,761 DEBUG Processing 755/860 atomic regions from SNP 226409 to 227009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,783 DEBUG Processing 463/753 atomic regions from SNP 138776 to 139376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,803 DEBUG Processing 378/709 atomic regions from SNP 113206 to 113806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,874 DEBUG Processing 381/738 atomic regions from SNP 114109 to 114709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,040 DEBUG Processing 756/860 atomic regions from SNP 226709 to 227309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,060 DEBUG Processing 379/709 atomic regions from SNP 113506 to 114106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,068 DEBUG Processing 464/753 atomic regions from SNP 139076 to 139676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,157 DEBUG Processing 382/738 atomic regions from SNP 114409 to 115009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,326 DEBUG Processing 757/860 atomic regions from SNP 227009 to 227609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,328 DEBUG Processing 380/709 atomic regions from SNP 113806 to 114406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,338 DEBUG Processing 465/753 atomic regions from SNP 139376 to 139976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,449 DEBUG Processing 383/738 atomic regions from SNP 114709 to 115309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,594 DEBUG Processing 381/709 atomic regions from SNP 114106 to 114706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,600 DEBUG Processing 466/753 atomic regions from SNP 139676 to 140276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,612 DEBUG Processing 758/860 atomic regions from SNP 227309 to 227909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,741 DEBUG Processing 384/738 atomic regions from SNP 115009 to 115609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,851 DEBUG Processing 382/709 atomic regions from SNP 114406 to 115006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,862 DEBUG Processing 467/753 atomic regions from SNP 139976 to 140576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,889 DEBUG Processing 759/860 atomic regions from SNP 227609 to 228209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,027 DEBUG Processing 385/738 atomic regions from SNP 115309 to 115909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,103 DEBUG Processing 383/709 atomic regions from SNP 114706 to 115306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,131 DEBUG Processing 468/753 atomic regions from SNP 140276 to 140876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,162 DEBUG Processing 760/860 atomic regions from SNP 227909 to 228509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,309 DEBUG Processing 386/738 atomic regions from SNP 115609 to 116209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,351 DEBUG Processing 384/709 atomic regions from SNP 115006 to 115606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,397 DEBUG Processing 469/753 atomic regions from SNP 140576 to 141176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,432 DEBUG Processing 761/860 atomic regions from SNP 228209 to 228809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,570 DEBUG Processing 387/738 atomic regions from SNP 115909 to 116509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,589 DEBUG Processing 385/709 atomic regions from SNP 115306 to 115906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,645 DEBUG Processing 470/753 atomic regions from SNP 140876 to 141476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,705 DEBUG Processing 762/860 atomic regions from SNP 228509 to 229109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,829 DEBUG Processing 388/738 atomic regions from SNP 116209 to 116809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,832 DEBUG Processing 386/709 atomic regions from SNP 115606 to 116206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,898 DEBUG Processing 471/753 atomic regions from SNP 141176 to 141776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,967 DEBUG Processing 763/860 atomic regions from SNP 228809 to 229409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,072 DEBUG Processing 387/709 atomic regions from SNP 115906 to 116506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,109 DEBUG Processing 389/738 atomic regions from SNP 116509 to 117109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,155 DEBUG Processing 472/753 atomic regions from SNP 141476 to 142076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,229 DEBUG Processing 764/860 atomic regions from SNP 229109 to 229709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,318 DEBUG Processing 388/709 atomic regions from SNP 116206 to 116806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,389 DEBUG Processing 390/738 atomic regions from SNP 116809 to 117409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,402 DEBUG Processing 473/753 atomic regions from SNP 141776 to 142376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,486 DEBUG Processing 765/860 atomic regions from SNP 229409 to 230009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,559 DEBUG Processing 389/709 atomic regions from SNP 116506 to 117106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,649 DEBUG Processing 474/753 atomic regions from SNP 142076 to 142676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,651 DEBUG Processing 391/738 atomic regions from SNP 117109 to 117709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,748 DEBUG Processing 766/860 atomic regions from SNP 229709 to 230309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,803 DEBUG Processing 390/709 atomic regions from SNP 116806 to 117406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,902 DEBUG Processing 475/753 atomic regions from SNP 142376 to 142976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,903 DEBUG Processing 392/738 atomic regions from SNP 117409 to 118009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,008 DEBUG Processing 767/860 atomic regions from SNP 230009 to 230609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,045 DEBUG Processing 391/709 atomic regions from SNP 117106 to 117706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,150 DEBUG Processing 476/753 atomic regions from SNP 142676 to 143276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,151 DEBUG Processing 393/738 atomic regions from SNP 117709 to 118309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,269 DEBUG Processing 768/860 atomic regions from SNP 230309 to 230909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,292 DEBUG Processing 392/709 atomic regions from SNP 117406 to 118006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,353 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:51:40,394 DEBUG Processing 477/753 atomic regions from SNP 142976 to 143576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,413 DEBUG Processing 394/738 atomic regions from SNP 118009 to 118609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,532 DEBUG Processing 769/860 atomic regions from SNP 230609 to 231209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,594 DEBUG Processing 393/709 atomic regions from SNP 117706 to 118306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,648 DEBUG Processing 478/753 atomic regions from SNP 143276 to 143876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,691 DEBUG Processing 395/738 atomic regions from SNP 118309 to 118909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,797 DEBUG Processing 770/860 atomic regions from SNP 230909 to 231509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,843 DEBUG Processing 394/709 atomic regions from SNP 118006 to 118606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,924 DEBUG Processing 479/753 atomic regions from SNP 143576 to 144176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,966 DEBUG Processing 396/738 atomic regions from SNP 118609 to 119209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,068 DEBUG Processing 771/860 atomic regions from SNP 231209 to 231809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,092 DEBUG Processing 395/709 atomic regions from SNP 118306 to 118906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,183 DEBUG Processing 480/753 atomic regions from SNP 143876 to 144476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,215 DEBUG Processing 397/738 atomic regions from SNP 118909 to 119509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,345 DEBUG Processing 396/709 atomic regions from SNP 118606 to 119206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,358 DEBUG Processing 772/860 atomic regions from SNP 231509 to 232109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,459 DEBUG Processing 481/753 atomic regions from SNP 144176 to 144776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,464 DEBUG Processing 398/738 atomic regions from SNP 119209 to 119809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,600 DEBUG Processing 397/709 atomic regions from SNP 118906 to 119506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,662 DEBUG Processing 773/860 atomic regions from SNP 231809 to 232409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,721 DEBUG Processing 399/738 atomic regions from SNP 119509 to 120109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,729 DEBUG Processing 482/753 atomic regions from SNP 144476 to 145076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,855 DEBUG Processing 398/709 atomic regions from SNP 119206 to 119806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,944 DEBUG Processing 774/860 atomic regions from SNP 232109 to 232709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,971 DEBUG Processing 400/738 atomic regions from SNP 119809 to 120409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,002 DEBUG Processing 483/753 atomic regions from SNP 144776 to 145376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,095 DEBUG Processing 399/709 atomic regions from SNP 119506 to 120106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,219 DEBUG Processing 401/738 atomic regions from SNP 120109 to 120709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,231 DEBUG Processing 775/860 atomic regions from SNP 232409 to 233009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,252 DEBUG Processing 484/753 atomic regions from SNP 145076 to 145676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,338 DEBUG Processing 400/709 atomic regions from SNP 119806 to 120406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,472 DEBUG Processing 402/738 atomic regions from SNP 120409 to 121009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,508 DEBUG Processing 485/753 atomic regions from SNP 145376 to 145976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,514 DEBUG Processing 776/860 atomic regions from SNP 232709 to 233309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,595 DEBUG Processing 401/709 atomic regions from SNP 120106 to 120706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,720 DEBUG Processing 403/738 atomic regions from SNP 120709 to 121309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,761 DEBUG Processing 486/753 atomic regions from SNP 145676 to 146276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,785 DEBUG Processing 777/860 atomic regions from SNP 233009 to 233609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,850 DEBUG Processing 402/709 atomic regions from SNP 120406 to 121006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,971 DEBUG Processing 404/738 atomic regions from SNP 121009 to 121609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,017 DEBUG Processing 487/753 atomic regions from SNP 145976 to 146576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,065 DEBUG Processing 778/860 atomic regions from SNP 233309 to 233909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,108 DEBUG Processing 403/709 atomic regions from SNP 120706 to 121306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,222 DEBUG Processing 405/738 atomic regions from SNP 121309 to 121909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,281 DEBUG Processing 488/753 atomic regions from SNP 146276 to 146876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,336 DEBUG Processing 779/860 atomic regions from SNP 233609 to 234209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,366 DEBUG Processing 404/709 atomic regions from SNP 121006 to 121606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,469 DEBUG Processing 406/738 atomic regions from SNP 121609 to 122209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,535 DEBUG Processing 489/753 atomic regions from SNP 146576 to 147176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,619 DEBUG Processing 780/860 atomic regions from SNP 233909 to 234509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,629 DEBUG Processing 405/709 atomic regions from SNP 121306 to 121906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,708 DEBUG Processing 407/738 atomic regions from SNP 121909 to 122509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,779 DEBUG Processing 490/753 atomic regions from SNP 146876 to 147476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,881 DEBUG Processing 406/709 atomic regions from SNP 121606 to 122206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,889 DEBUG Processing 781/860 atomic regions from SNP 234209 to 234809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,948 DEBUG Processing 408/738 atomic regions from SNP 122209 to 122809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,013 DEBUG Processing 491/753 atomic regions from SNP 147176 to 147776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,135 DEBUG Processing 407/709 atomic regions from SNP 121906 to 122506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,159 DEBUG Processing 782/860 atomic regions from SNP 234509 to 235109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,219 DEBUG Processing 409/738 atomic regions from SNP 122509 to 123109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,280 DEBUG Processing 492/753 atomic regions from SNP 147476 to 148076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,407 DEBUG Processing 408/709 atomic regions from SNP 122206 to 122806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,458 DEBUG Processing 783/860 atomic regions from SNP 234809 to 235409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,481 DEBUG Processing 410/738 atomic regions from SNP 122809 to 123409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,545 DEBUG Processing 493/753 atomic regions from SNP 147776 to 148376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,665 DEBUG Processing 409/709 atomic regions from SNP 122506 to 123106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,731 DEBUG Processing 411/738 atomic regions from SNP 123109 to 123709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,747 DEBUG Processing 784/860 atomic regions from SNP 235109 to 235709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,798 DEBUG Processing 494/753 atomic regions from SNP 148076 to 148676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,918 DEBUG Processing 410/709 atomic regions from SNP 122806 to 123406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,998 DEBUG Processing 412/738 atomic regions from SNP 123409 to 124009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,047 DEBUG Processing 495/753 atomic regions from SNP 148376 to 148976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,057 DEBUG Processing 785/860 atomic regions from SNP 235409 to 236009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,180 DEBUG Processing 411/709 atomic regions from SNP 123106 to 123706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,255 DEBUG Processing 413/738 atomic regions from SNP 123709 to 124309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,301 DEBUG Processing 496/753 atomic regions from SNP 148676 to 149276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,326 DEBUG Processing 786/860 atomic regions from SNP 235709 to 236309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,434 DEBUG Processing 412/709 atomic regions from SNP 123406 to 124006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,511 DEBUG Processing 414/738 atomic regions from SNP 124009 to 124609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,557 DEBUG Processing 497/753 atomic regions from SNP 148976 to 149576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,604 DEBUG Processing 787/860 atomic regions from SNP 236009 to 236609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,687 DEBUG Processing 413/709 atomic regions from SNP 123706 to 124306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,759 DEBUG Processing 415/738 atomic regions from SNP 124309 to 124909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,808 DEBUG Processing 498/753 atomic regions from SNP 149276 to 149876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,878 DEBUG Processing 788/860 atomic regions from SNP 236309 to 236909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,947 DEBUG Processing 414/709 atomic regions from SNP 124006 to 124606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,008 DEBUG Processing 416/738 atomic regions from SNP 124609 to 125209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,063 DEBUG Processing 499/753 atomic regions from SNP 149576 to 150176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,153 DEBUG Processing 789/860 atomic regions from SNP 236609 to 237209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,207 DEBUG Processing 415/709 atomic regions from SNP 124306 to 124906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,260 DEBUG Processing 417/738 atomic regions from SNP 124909 to 125509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,310 DEBUG Processing 500/753 atomic regions from SNP 149876 to 150476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,429 DEBUG Processing 790/860 atomic regions from SNP 236909 to 237509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,473 DEBUG Processing 416/709 atomic regions from SNP 124606 to 125206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,512 DEBUG Processing 418/738 atomic regions from SNP 125209 to 125809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,561 DEBUG Processing 501/753 atomic regions from SNP 150176 to 150776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,712 DEBUG Processing 791/860 atomic regions from SNP 237209 to 237809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,735 DEBUG Processing 417/709 atomic regions from SNP 124906 to 125506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,767 DEBUG Processing 419/738 atomic regions from SNP 125509 to 126109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,820 DEBUG Processing 502/753 atomic regions from SNP 150476 to 151076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,988 DEBUG Processing 792/860 atomic regions from SNP 237509 to 238109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,995 DEBUG Processing 418/709 atomic regions from SNP 125206 to 125806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,019 DEBUG Processing 420/738 atomic regions from SNP 125809 to 126409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,065 DEBUG Processing 503/753 atomic regions from SNP 150776 to 151376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,256 DEBUG Processing 793/860 atomic regions from SNP 237809 to 238409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,268 DEBUG Processing 419/709 atomic regions from SNP 125506 to 126106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,269 DEBUG Processing 421/738 atomic regions from SNP 126109 to 126709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,311 DEBUG Processing 504/753 atomic regions from SNP 151076 to 151676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,520 DEBUG Processing 422/738 atomic regions from SNP 126409 to 127009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,526 DEBUG Processing 794/860 atomic regions from SNP 238109 to 238709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,527 DEBUG Processing 420/709 atomic regions from SNP 125806 to 126406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,563 DEBUG Processing 505/753 atomic regions from SNP 151376 to 151976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,783 DEBUG Processing 423/738 atomic regions from SNP 126709 to 127309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,787 DEBUG Processing 421/709 atomic regions from SNP 126106 to 126706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,795 DEBUG Processing 795/860 atomic regions from SNP 238409 to 239009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,817 DEBUG Processing 506/753 atomic regions from SNP 151676 to 152276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,031 DEBUG Processing 424/738 atomic regions from SNP 127009 to 127609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,040 DEBUG Processing 422/709 atomic regions from SNP 126406 to 127006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,062 DEBUG Processing 796/860 atomic regions from SNP 238709 to 239309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,063 DEBUG Processing 507/753 atomic regions from SNP 151976 to 152576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,280 DEBUG Processing 425/738 atomic regions from SNP 127309 to 127909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,303 DEBUG Processing 423/709 atomic regions from SNP 126706 to 127306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,315 DEBUG Processing 508/753 atomic regions from SNP 152276 to 152876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,332 DEBUG Processing 797/860 atomic regions from SNP 239009 to 239609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,530 DEBUG Processing 426/738 atomic regions from SNP 127609 to 128209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,567 DEBUG Processing 509/753 atomic regions from SNP 152576 to 153176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,575 DEBUG Processing 424/709 atomic regions from SNP 127006 to 127606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,605 DEBUG Processing 798/860 atomic regions from SNP 239309 to 239909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,772 DEBUG Processing 427/738 atomic regions from SNP 127909 to 128509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,816 DEBUG Processing 510/753 atomic regions from SNP 152876 to 153476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,831 DEBUG Processing 425/709 atomic regions from SNP 127306 to 127906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,887 DEBUG Processing 799/860 atomic regions from SNP 239609 to 240209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,018 DEBUG Processing 428/738 atomic regions from SNP 128209 to 128809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,067 DEBUG Processing 511/753 atomic regions from SNP 153176 to 153776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,092 DEBUG Processing 426/709 atomic regions from SNP 127606 to 128206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,156 DEBUG Processing 800/860 atomic regions from SNP 239909 to 240509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,263 DEBUG Processing 429/738 atomic regions from SNP 128509 to 129109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,314 DEBUG Processing 512/753 atomic regions from SNP 153476 to 154076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,352 DEBUG Processing 427/709 atomic regions from SNP 127906 to 128506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,419 DEBUG Processing 801/860 atomic regions from SNP 240209 to 240809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,519 DEBUG Processing 430/738 atomic regions from SNP 128809 to 129409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,573 DEBUG Processing 513/753 atomic regions from SNP 153776 to 154376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,638 DEBUG Processing 428/709 atomic regions from SNP 128206 to 128806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,691 DEBUG Processing 802/860 atomic regions from SNP 240509 to 241109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,768 DEBUG Processing 431/738 atomic regions from SNP 129109 to 129709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,824 DEBUG Processing 514/753 atomic regions from SNP 154076 to 154676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,889 DEBUG Processing 429/709 atomic regions from SNP 128506 to 129106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,952 DEBUG Processing 803/860 atomic regions from SNP 240809 to 241409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,007 DEBUG Processing 432/738 atomic regions from SNP 129409 to 130009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,066 DEBUG Processing 515/753 atomic regions from SNP 154376 to 154976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,151 DEBUG Processing 430/709 atomic regions from SNP 128806 to 129406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,212 DEBUG Processing 804/860 atomic regions from SNP 241109 to 241709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,251 DEBUG Processing 433/738 atomic regions from SNP 129709 to 130309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,311 DEBUG Processing 516/753 atomic regions from SNP 154676 to 155276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,409 DEBUG Processing 431/709 atomic regions from SNP 129106 to 129706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,473 DEBUG Processing 805/860 atomic regions from SNP 241409 to 242009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,494 DEBUG Processing 434/738 atomic regions from SNP 130009 to 130609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,556 DEBUG Processing 517/753 atomic regions from SNP 154976 to 155576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,676 DEBUG Processing 432/709 atomic regions from SNP 129406 to 130006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,726 DEBUG Processing 806/860 atomic regions from SNP 241709 to 242309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,732 DEBUG Processing 435/738 atomic regions from SNP 130309 to 130909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,800 DEBUG Processing 518/753 atomic regions from SNP 155276 to 155876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,943 DEBUG Processing 433/709 atomic regions from SNP 129706 to 130306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,984 DEBUG Processing 807/860 atomic regions from SNP 242009 to 242609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,992 DEBUG Processing 436/738 atomic regions from SNP 130609 to 131209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,075 DEBUG Processing 519/753 atomic regions from SNP 155576 to 156176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,189 DEBUG Processing 434/709 atomic regions from SNP 130006 to 130606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,256 DEBUG Processing 437/738 atomic regions from SNP 130909 to 131509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,263 DEBUG Processing 808/860 atomic regions from SNP 242309 to 242909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,331 DEBUG Processing 520/753 atomic regions from SNP 155876 to 156476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,443 DEBUG Processing 435/709 atomic regions from SNP 130306 to 130906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,506 DEBUG Processing 438/738 atomic regions from SNP 131209 to 131809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,531 DEBUG Processing 809/860 atomic regions from SNP 242609 to 243209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,585 DEBUG Processing 521/753 atomic regions from SNP 156176 to 156776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,689 DEBUG Processing 436/709 atomic regions from SNP 130606 to 131206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,749 DEBUG Processing 439/738 atomic regions from SNP 131509 to 132109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,791 DEBUG Processing 810/860 atomic regions from SNP 242909 to 243509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,839 DEBUG Processing 522/753 atomic regions from SNP 156476 to 157076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,941 DEBUG Processing 437/709 atomic regions from SNP 130906 to 131506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,993 DEBUG Processing 440/738 atomic regions from SNP 131809 to 132409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,060 DEBUG Processing 811/860 atomic regions from SNP 243209 to 243809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,086 DEBUG Processing 523/753 atomic regions from SNP 156776 to 157376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,195 DEBUG Processing 438/709 atomic regions from SNP 131206 to 131806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,233 DEBUG Processing 441/738 atomic regions from SNP 132109 to 132709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,324 DEBUG Processing 812/860 atomic regions from SNP 243509 to 244109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,332 DEBUG Processing 524/753 atomic regions from SNP 157076 to 157676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,466 DEBUG Processing 439/709 atomic regions from SNP 131506 to 132106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,481 DEBUG Processing 442/738 atomic regions from SNP 132409 to 133009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,579 DEBUG Processing 525/753 atomic regions from SNP 157376 to 157976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,589 DEBUG Processing 813/860 atomic regions from SNP 243809 to 244409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,716 DEBUG Processing 440/709 atomic regions from SNP 131806 to 132406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,735 DEBUG Processing 443/738 atomic regions from SNP 132709 to 133309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,826 DEBUG Processing 526/753 atomic regions from SNP 157676 to 158276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,850 DEBUG Processing 814/860 atomic regions from SNP 244109 to 244709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,979 DEBUG Processing 441/709 atomic regions from SNP 132106 to 132706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,001 DEBUG Processing 444/738 atomic regions from SNP 133009 to 133609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,064 DEBUG Processing 527/753 atomic regions from SNP 157976 to 158576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,110 DEBUG Processing 815/860 atomic regions from SNP 244409 to 245009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,242 DEBUG Processing 442/709 atomic regions from SNP 132406 to 133006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,252 DEBUG Processing 445/738 atomic regions from SNP 133309 to 133909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,312 DEBUG Processing 528/753 atomic regions from SNP 158276 to 158876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,377 DEBUG Processing 816/860 atomic regions from SNP 244709 to 245309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,484 DEBUG Processing 443/709 atomic regions from SNP 132706 to 133306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,494 DEBUG Processing 446/738 atomic regions from SNP 133609 to 134209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,563 DEBUG Processing 529/753 atomic regions from SNP 158576 to 159176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,646 DEBUG Processing 817/860 atomic regions from SNP 245009 to 245609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,738 DEBUG Processing 447/738 atomic regions from SNP 133909 to 134509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,758 DEBUG Processing 444/709 atomic regions from SNP 133006 to 133606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,818 DEBUG Processing 530/753 atomic regions from SNP 158876 to 159476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,909 DEBUG Processing 818/860 atomic regions from SNP 245309 to 245909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,980 DEBUG Processing 448/738 atomic regions from SNP 134209 to 134809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,018 DEBUG Processing 445/709 atomic regions from SNP 133306 to 133906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,077 DEBUG Processing 531/753 atomic regions from SNP 159176 to 159776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,176 DEBUG Processing 819/860 atomic regions from SNP 245609 to 246209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,227 DEBUG Processing 449/738 atomic regions from SNP 134509 to 135109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,278 DEBUG Processing 446/709 atomic regions from SNP 133606 to 134206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,330 DEBUG Processing 532/753 atomic regions from SNP 159476 to 160076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,436 DEBUG Processing 820/860 atomic regions from SNP 245909 to 246509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,468 DEBUG Processing 450/738 atomic regions from SNP 134809 to 135409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,532 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:51:54,534 DEBUG chr14: Signal quantile: 0.995. signal threshold: 16. Best RMSEA: 0.026 2025-01-31 09:51:54,539 DEBUG Processing 447/709 atomic regions from SNP 133906 to 134506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,580 DEBUG Processing 533/753 atomic regions from SNP 159776 to 160376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,700 DEBUG Processing 821/860 atomic regions from SNP 246209 to 246809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,712 DEBUG Processing 451/738 atomic regions from SNP 135109 to 135709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,809 DEBUG Processing 448/709 atomic regions from SNP 134206 to 134806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,827 DEBUG Processing 534/753 atomic regions from SNP 160076 to 160676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,946 DEBUG Processing 452/738 atomic regions from SNP 135409 to 136009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,970 DEBUG Processing 822/860 atomic regions from SNP 246509 to 247109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,052 DEBUG Processing 449/709 atomic regions from SNP 134506 to 135106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,071 DEBUG Processing 535/753 atomic regions from SNP 160376 to 160976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,179 DEBUG Processing 453/738 atomic regions from SNP 135709 to 136309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,224 DEBUG Processing 823/860 atomic regions from SNP 246809 to 247409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,312 DEBUG Processing 450/709 atomic regions from SNP 134806 to 135406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,324 DEBUG Processing 536/753 atomic regions from SNP 160676 to 161276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,409 DEBUG Processing 454/738 atomic regions from SNP 136009 to 136609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,471 DEBUG Processing 824/860 atomic regions from SNP 247109 to 247709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,559 DEBUG Processing 451/709 atomic regions from SNP 135106 to 135706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,567 DEBUG Processing 537/753 atomic regions from SNP 160976 to 161576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,647 DEBUG Processing 455/738 atomic regions from SNP 136309 to 136909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,743 DEBUG Processing 825/860 atomic regions from SNP 247409 to 248009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,801 DEBUG Processing 452/709 atomic regions from SNP 135406 to 136006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,810 DEBUG Processing 538/753 atomic regions from SNP 161276 to 161876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,887 DEBUG Processing 456/738 atomic regions from SNP 136609 to 137209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,000 DEBUG Processing 826/860 atomic regions from SNP 247709 to 248309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,048 DEBUG Processing 453/709 atomic regions from SNP 135706 to 136306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,058 DEBUG Processing 539/753 atomic regions from SNP 161576 to 162176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,139 DEBUG Processing 457/738 atomic regions from SNP 136909 to 137509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,263 DEBUG Processing 827/860 atomic regions from SNP 248009 to 248609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,297 DEBUG Processing 454/709 atomic regions from SNP 136006 to 136606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,304 DEBUG Processing 540/753 atomic regions from SNP 161876 to 162476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,377 DEBUG Processing 458/738 atomic regions from SNP 137209 to 137809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,519 DEBUG Processing 828/860 atomic regions from SNP 248309 to 248909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,538 DEBUG Processing 455/709 atomic regions from SNP 136306 to 136906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,545 DEBUG Processing 541/753 atomic regions from SNP 162176 to 162776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,617 DEBUG Processing 459/738 atomic regions from SNP 137509 to 138109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,768 DEBUG Processing 829/860 atomic regions from SNP 248609 to 249209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,779 DEBUG Processing 456/709 atomic regions from SNP 136606 to 137206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,783 DEBUG Processing 542/753 atomic regions from SNP 162476 to 163076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,887 DEBUG Processing 460/738 atomic regions from SNP 137809 to 138409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,978 DEBUG chr14 total SNP count: 201615 2025-01-31 09:51:56,978 DEBUG chr14 length: 124902244 2025-01-31 09:51:56,978 DEBUG ----------------------------------------- 2025-01-31 09:51:56,978 INFO Processing SNPs in chr14 2025-01-31 09:51:57,025 DEBUG Processing 457/709 atomic regions from SNP 136906 to 137506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,030 DEBUG Processing 830/860 atomic regions from SNP 248909 to 249509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,030 DEBUG Processing 543/753 atomic regions from SNP 162776 to 163376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,150 DEBUG Processing 461/738 atomic regions from SNP 138109 to 138709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,264 DEBUG Processing 458/709 atomic regions from SNP 137206 to 137806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,271 DEBUG Processing 544/753 atomic regions from SNP 163076 to 163676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,288 DEBUG Processing 831/860 atomic regions from SNP 249209 to 249809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,302 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 175), (175, 201615)] 2025-01-31 09:51:57,398 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:57,418 DEBUG Processing 462/738 atomic regions from SNP 138409 to 139009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,420 DEBUG Segmenting atomic regions: 2025-01-31 09:51:57,512 DEBUG Processing 459/709 atomic regions from SNP 137506 to 138106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,512 DEBUG Processing 1/1 atomic regions from SNP 0 to 174 for chr14 (subchromosome 1 of 2). 2025-01-31 09:51:57,519 DEBUG Processing 545/753 atomic regions from SNP 163376 to 163976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,523 DEBUG Unique SNPs positions in subchromosome 1: 175 2025-01-31 09:51:57,524 DEBUG Subchromosome time: 0.12546567397657782, subchromosome SNPs: 175 2025-01-31 09:51:57,552 DEBUG Processing 832/860 atomic regions from SNP 249509 to 250109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,578 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:57,689 DEBUG Processing 463/738 atomic regions from SNP 138709 to 139309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,753 DEBUG Processing 460/709 atomic regions from SNP 137806 to 138406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,762 DEBUG Processing 546/753 atomic regions from SNP 163676 to 164276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,808 DEBUG Processing 833/860 atomic regions from SNP 249809 to 250409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,947 DEBUG Processing 464/738 atomic regions from SNP 139009 to 139609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,995 DEBUG Processing 461/709 atomic regions from SNP 138106 to 138706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,019 DEBUG Processing 547/753 atomic regions from SNP 163976 to 164576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,067 DEBUG Processing 834/860 atomic regions from SNP 250109 to 250709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,187 DEBUG Processing 465/738 atomic regions from SNP 139309 to 139909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,238 DEBUG Processing 462/709 atomic regions from SNP 138406 to 139006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,265 DEBUG Processing 548/753 atomic regions from SNP 164276 to 164876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,328 DEBUG Processing 835/860 atomic regions from SNP 250409 to 251009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,442 DEBUG Processing 466/738 atomic regions from SNP 139609 to 140209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,480 DEBUG Processing 463/709 atomic regions from SNP 138706 to 139306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,507 DEBUG Processing 549/753 atomic regions from SNP 164576 to 165176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,591 DEBUG Processing 836/860 atomic regions from SNP 250709 to 251309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,722 DEBUG Processing 467/738 atomic regions from SNP 139909 to 140509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,727 DEBUG Processing 464/709 atomic regions from SNP 139006 to 139606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,751 DEBUG Processing 550/753 atomic regions from SNP 164876 to 165476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,851 DEBUG Processing 837/860 atomic regions from SNP 251009 to 251609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,967 DEBUG Processing 465/709 atomic regions from SNP 139306 to 139906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,997 DEBUG Processing 468/738 atomic regions from SNP 140209 to 140809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,002 DEBUG Processing 551/753 atomic regions from SNP 165176 to 165776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,110 DEBUG Processing 838/860 atomic regions from SNP 251309 to 251909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,210 DEBUG Processing 466/709 atomic regions from SNP 139606 to 140206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,250 DEBUG Processing 552/753 atomic regions from SNP 165476 to 166076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,271 DEBUG Processing 469/738 atomic regions from SNP 140509 to 141109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,363 DEBUG Processing 839/860 atomic regions from SNP 251609 to 252209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,453 DEBUG Processing 467/709 atomic regions from SNP 139906 to 140506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,495 DEBUG Processing 553/753 atomic regions from SNP 165776 to 166376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,532 DEBUG Processing 470/738 atomic regions from SNP 140809 to 141409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,619 DEBUG Processing 840/860 atomic regions from SNP 251909 to 252509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,711 DEBUG Processing 468/709 atomic regions from SNP 140206 to 140806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,744 DEBUG Processing 554/753 atomic regions from SNP 166076 to 166676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,788 DEBUG Processing 471/738 atomic regions from SNP 141109 to 141709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,881 DEBUG Processing 841/860 atomic regions from SNP 252209 to 252809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,973 DEBUG Processing 469/709 atomic regions from SNP 140506 to 141106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,996 DEBUG Processing 555/753 atomic regions from SNP 166376 to 166976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,044 DEBUG Processing 472/738 atomic regions from SNP 141409 to 142009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,142 DEBUG Processing 842/860 atomic regions from SNP 252509 to 253109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,225 DEBUG Processing 470/709 atomic regions from SNP 140806 to 141406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,247 DEBUG Processing 556/753 atomic regions from SNP 166676 to 167276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,296 DEBUG Processing 473/738 atomic regions from SNP 141709 to 142309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,401 DEBUG Processing 843/860 atomic regions from SNP 252809 to 253409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,477 DEBUG Processing 471/709 atomic regions from SNP 141106 to 141706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,502 DEBUG Processing 557/753 atomic regions from SNP 166976 to 167576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,553 DEBUG Processing 474/738 atomic regions from SNP 142009 to 142609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,683 DEBUG Processing 844/860 atomic regions from SNP 253109 to 253709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,726 DEBUG Processing 472/709 atomic regions from SNP 141406 to 142006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,752 DEBUG Processing 558/753 atomic regions from SNP 167276 to 167876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,807 DEBUG Processing 475/738 atomic regions from SNP 142309 to 142909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,946 DEBUG Processing 845/860 atomic regions from SNP 253409 to 254009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,974 DEBUG Processing 473/709 atomic regions from SNP 141706 to 142306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,006 DEBUG Processing 559/753 atomic regions from SNP 167576 to 168176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,064 DEBUG Processing 476/738 atomic regions from SNP 142609 to 143209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,203 DEBUG Processing 846/860 atomic regions from SNP 253709 to 254309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,218 DEBUG Processing 474/709 atomic regions from SNP 142006 to 142606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,256 DEBUG Processing 560/753 atomic regions from SNP 167876 to 168476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,320 DEBUG Processing 477/738 atomic regions from SNP 142909 to 143509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,457 DEBUG Processing 847/860 atomic regions from SNP 254009 to 254609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,459 DEBUG Processing 475/709 atomic regions from SNP 142306 to 142906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,505 DEBUG Processing 561/753 atomic regions from SNP 168176 to 168776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,572 DEBUG Processing 478/738 atomic regions from SNP 143209 to 143809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,701 DEBUG Processing 476/709 atomic regions from SNP 142606 to 143206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,713 DEBUG Processing 848/860 atomic regions from SNP 254309 to 254909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,752 DEBUG Processing 562/753 atomic regions from SNP 168476 to 169076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,828 DEBUG Processing 479/738 atomic regions from SNP 143509 to 144109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,943 DEBUG Processing 477/709 atomic regions from SNP 142906 to 143506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,969 DEBUG Processing 849/860 atomic regions from SNP 254609 to 255209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,997 DEBUG Processing 563/753 atomic regions from SNP 168776 to 169376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,084 DEBUG Processing 480/738 atomic regions from SNP 143809 to 144409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,190 DEBUG Processing 478/709 atomic regions from SNP 143206 to 143806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,229 DEBUG Processing 850/860 atomic regions from SNP 254909 to 255509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,244 DEBUG Processing 564/753 atomic regions from SNP 169076 to 169676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,335 DEBUG Processing 481/738 atomic regions from SNP 144109 to 144709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,426 DEBUG Processing 479/709 atomic regions from SNP 143506 to 144106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,478 DEBUG Processing 851/860 atomic regions from SNP 255209 to 255809 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,478 DEBUG Processing 565/753 atomic regions from SNP 169376 to 169976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,582 DEBUG Processing 482/738 atomic regions from SNP 144409 to 145009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,670 DEBUG Processing 480/709 atomic regions from SNP 143806 to 144406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,720 DEBUG Processing 566/753 atomic regions from SNP 169676 to 170276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,726 DEBUG Processing 852/860 atomic regions from SNP 255509 to 256109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,825 DEBUG Processing 483/738 atomic regions from SNP 144709 to 145309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,910 DEBUG Processing 481/709 atomic regions from SNP 144106 to 144706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,978 DEBUG Processing 853/860 atomic regions from SNP 255809 to 256409 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,986 DEBUG Processing 567/753 atomic regions from SNP 169976 to 170576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,073 DEBUG Processing 484/738 atomic regions from SNP 145009 to 145609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,156 DEBUG Processing 482/709 atomic regions from SNP 144406 to 145006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,221 DEBUG Processing 568/753 atomic regions from SNP 170276 to 170876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,230 DEBUG Processing 854/860 atomic regions from SNP 256109 to 256709 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,322 DEBUG Processing 485/738 atomic regions from SNP 145309 to 145909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,402 DEBUG Processing 483/709 atomic regions from SNP 144706 to 145306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,455 DEBUG Processing 569/753 atomic regions from SNP 170576 to 171176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,485 DEBUG Processing 855/860 atomic regions from SNP 256409 to 257009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,594 DEBUG Processing 486/738 atomic regions from SNP 145609 to 146209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,657 DEBUG Processing 484/709 atomic regions from SNP 145006 to 145606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,699 DEBUG Processing 570/753 atomic regions from SNP 170876 to 171476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,775 DEBUG Processing 856/860 atomic regions from SNP 256709 to 257309 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,856 DEBUG Processing 487/738 atomic regions from SNP 145909 to 146509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,933 DEBUG Processing 485/709 atomic regions from SNP 145306 to 145906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,942 DEBUG Processing 571/753 atomic regions from SNP 171176 to 171776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,038 DEBUG Processing 857/860 atomic regions from SNP 257009 to 257609 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,122 DEBUG Processing 488/738 atomic regions from SNP 146209 to 146809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,184 DEBUG Processing 572/753 atomic regions from SNP 171476 to 172076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,196 DEBUG Processing 486/709 atomic regions from SNP 145606 to 146206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,303 DEBUG Processing 858/860 atomic regions from SNP 257309 to 257909 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,386 DEBUG Processing 489/738 atomic regions from SNP 146509 to 147109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,426 DEBUG Processing 573/753 atomic regions from SNP 171776 to 172376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,440 DEBUG Processing 487/709 atomic regions from SNP 145906 to 146506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,584 DEBUG Processing 859/860 atomic regions from SNP 257609 to 258209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,640 DEBUG Processing 490/738 atomic regions from SNP 146809 to 147409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,676 DEBUG Processing 574/753 atomic regions from SNP 172076 to 172676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,703 DEBUG Processing 488/709 atomic regions from SNP 146206 to 146806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,851 DEBUG Processing 860/860 atomic regions from SNP 257909 to 258509 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,884 DEBUG Processing 491/738 atomic regions from SNP 147109 to 147709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,917 DEBUG Processing 575/753 atomic regions from SNP 172376 to 172976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,961 DEBUG Processing 489/709 atomic regions from SNP 146506 to 147106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,006 DEBUG Unique SNPs positions in subchromosome 1: 258510 2025-01-31 09:52:05,129 DEBUG Processing 492/738 atomic regions from SNP 147409 to 148009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,163 DEBUG Processing 576/753 atomic regions from SNP 172676 to 173276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,223 DEBUG Processing 490/709 atomic regions from SNP 146806 to 147406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,368 DEBUG Processing 493/738 atomic regions from SNP 147709 to 148309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,404 DEBUG Processing 577/753 atomic regions from SNP 172976 to 173576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,483 DEBUG Processing 491/709 atomic regions from SNP 147106 to 147706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,624 DEBUG Processing 494/738 atomic regions from SNP 148009 to 148609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,653 DEBUG Processing 578/753 atomic regions from SNP 173276 to 173876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,746 DEBUG Processing 492/709 atomic regions from SNP 147406 to 148006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,871 DEBUG Processing 495/738 atomic regions from SNP 148309 to 148909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,904 DEBUG Processing 579/753 atomic regions from SNP 173576 to 174176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,000 DEBUG Processing 493/709 atomic regions from SNP 147706 to 148306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,116 DEBUG Processing 496/738 atomic regions from SNP 148609 to 149209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,152 DEBUG Processing 580/753 atomic regions from SNP 173876 to 174476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,251 DEBUG Processing 494/709 atomic regions from SNP 148006 to 148606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,353 DEBUG Processing 497/738 atomic regions from SNP 148909 to 149509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,378 DEBUG Processing 581/753 atomic regions from SNP 174176 to 174776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,458 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:52:06,488 DEBUG Processing 495/709 atomic regions from SNP 148306 to 148906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,586 DEBUG Processing 498/738 atomic regions from SNP 149209 to 149809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,610 DEBUG Processing 582/753 atomic regions from SNP 174476 to 175076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,754 DEBUG Processing 496/709 atomic regions from SNP 148606 to 149206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,829 DEBUG Processing 499/738 atomic regions from SNP 149509 to 150109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,848 DEBUG Processing 583/753 atomic regions from SNP 174776 to 175376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,018 DEBUG Processing 497/709 atomic regions from SNP 148906 to 149506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,069 DEBUG Processing 500/738 atomic regions from SNP 149809 to 150409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,081 DEBUG Processing 584/753 atomic regions from SNP 175076 to 175676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,285 DEBUG Processing 498/709 atomic regions from SNP 149206 to 149806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,308 DEBUG Processing 501/738 atomic regions from SNP 150109 to 150709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,320 DEBUG Processing 585/753 atomic regions from SNP 175376 to 175976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,540 DEBUG Processing 499/709 atomic regions from SNP 149506 to 150106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,552 DEBUG Processing 502/738 atomic regions from SNP 150409 to 151009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,566 DEBUG Processing 586/753 atomic regions from SNP 175676 to 176276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,776 DEBUG Processing 500/709 atomic regions from SNP 149806 to 150406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,789 DEBUG Processing 503/738 atomic regions from SNP 150709 to 151309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,800 DEBUG Processing 587/753 atomic regions from SNP 175976 to 176576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,014 DEBUG Processing 501/709 atomic regions from SNP 150106 to 150706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,024 DEBUG Processing 504/738 atomic regions from SNP 151009 to 151609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,032 DEBUG Processing 588/753 atomic regions from SNP 176276 to 176876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,255 DEBUG Processing 502/709 atomic regions from SNP 150406 to 151006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,255 DEBUG Processing 505/738 atomic regions from SNP 151309 to 151909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,263 DEBUG Processing 589/753 atomic regions from SNP 176576 to 177176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,498 DEBUG Processing 506/738 atomic regions from SNP 151609 to 152209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,499 DEBUG Processing 503/709 atomic regions from SNP 150706 to 151306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,505 DEBUG Processing 590/753 atomic regions from SNP 176876 to 177476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,739 DEBUG Processing 591/753 atomic regions from SNP 177176 to 177776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,738 DEBUG Processing 504/709 atomic regions from SNP 151006 to 151606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,746 DEBUG Processing 507/738 atomic regions from SNP 151909 to 152509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,982 DEBUG Processing 508/738 atomic regions from SNP 152209 to 152809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,984 DEBUG Processing 592/753 atomic regions from SNP 177476 to 178076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,988 DEBUG Processing 505/709 atomic regions from SNP 151306 to 151906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,221 DEBUG Processing 509/738 atomic regions from SNP 152509 to 153109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,222 DEBUG Processing 593/753 atomic regions from SNP 177776 to 178376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,228 DEBUG Processing 506/709 atomic regions from SNP 151606 to 152206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,455 DEBUG Processing 510/738 atomic regions from SNP 152809 to 153409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,458 DEBUG Processing 594/753 atomic regions from SNP 178076 to 178676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,465 DEBUG Processing 507/709 atomic regions from SNP 151906 to 152506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,687 DEBUG Processing 511/738 atomic regions from SNP 153109 to 153709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,694 DEBUG Processing 595/753 atomic regions from SNP 178376 to 178976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,706 DEBUG Processing 508/709 atomic regions from SNP 152206 to 152806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,934 DEBUG Processing 512/738 atomic regions from SNP 153409 to 154009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,942 DEBUG Processing 596/753 atomic regions from SNP 178676 to 179276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,959 DEBUG Processing 509/709 atomic regions from SNP 152506 to 153106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,167 DEBUG Processing 513/738 atomic regions from SNP 153709 to 154309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,176 DEBUG Processing 597/753 atomic regions from SNP 178976 to 179576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,197 DEBUG Processing 510/709 atomic regions from SNP 152806 to 153406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,401 DEBUG Processing 514/738 atomic regions from SNP 154009 to 154609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,409 DEBUG Processing 598/753 atomic regions from SNP 179276 to 179876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,434 DEBUG Processing 511/709 atomic regions from SNP 153106 to 153706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,640 DEBUG Processing 515/738 atomic regions from SNP 154309 to 154909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,663 DEBUG Processing 599/753 atomic regions from SNP 179576 to 180176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,681 DEBUG Processing 512/709 atomic regions from SNP 153406 to 154006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,879 DEBUG Processing 516/738 atomic regions from SNP 154609 to 155209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,905 DEBUG Processing 600/753 atomic regions from SNP 179876 to 180476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,924 DEBUG Processing 513/709 atomic regions from SNP 153706 to 154306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,116 DEBUG Processing 517/738 atomic regions from SNP 154909 to 155509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,138 DEBUG Processing 601/753 atomic regions from SNP 180176 to 180776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,158 DEBUG Processing 514/709 atomic regions from SNP 154006 to 154606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,349 DEBUG Processing 518/738 atomic regions from SNP 155209 to 155809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,366 DEBUG Processing 602/753 atomic regions from SNP 180476 to 181076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,388 DEBUG Processing 515/709 atomic regions from SNP 154306 to 154906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,586 DEBUG Processing 519/738 atomic regions from SNP 155509 to 156109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,604 DEBUG Processing 603/753 atomic regions from SNP 180776 to 181376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,626 DEBUG Processing 516/709 atomic regions from SNP 154606 to 155206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,824 DEBUG Processing 520/738 atomic regions from SNP 155809 to 156409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,841 DEBUG Processing 604/753 atomic regions from SNP 181076 to 181676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,861 DEBUG Processing 517/709 atomic regions from SNP 154906 to 155506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,062 DEBUG Processing 521/738 atomic regions from SNP 156109 to 156709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,076 DEBUG Processing 605/753 atomic regions from SNP 181376 to 181976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,106 DEBUG Processing 518/709 atomic regions from SNP 155206 to 155806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,300 DEBUG Processing 522/738 atomic regions from SNP 156409 to 157009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,312 DEBUG Processing 606/753 atomic regions from SNP 181676 to 182276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,337 DEBUG Processing 519/709 atomic regions from SNP 155506 to 156106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,539 DEBUG Processing 523/738 atomic regions from SNP 156709 to 157309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,547 DEBUG Processing 607/753 atomic regions from SNP 181976 to 182576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,571 DEBUG Processing 520/709 atomic regions from SNP 155806 to 156406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,785 DEBUG Processing 524/738 atomic regions from SNP 157009 to 157609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,788 DEBUG Processing 608/753 atomic regions from SNP 182276 to 182876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,812 DEBUG Processing 521/709 atomic regions from SNP 156106 to 156706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,028 DEBUG Processing 609/753 atomic regions from SNP 182576 to 183176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,041 DEBUG Processing 525/738 atomic regions from SNP 157309 to 157909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,053 DEBUG Processing 522/709 atomic regions from SNP 156406 to 157006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,269 DEBUG Processing 610/753 atomic regions from SNP 182876 to 183476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,293 DEBUG Processing 523/709 atomic regions from SNP 156706 to 157306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,306 DEBUG Processing 526/738 atomic regions from SNP 157609 to 158209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,310 DEBUG Subchromosome time: 267.4194090189412, subchromosome SNPs: 258510 2025-01-31 09:52:13,311 DEBUG Estimated BADs: [2.03, 1.02, 6.10, 2.03, 6.10, 2.03, 1.02, 4.07, 2.03, 1.02, 6.10, 2.03, 0.51, 1.02, 4.07, 2.03, 1.02, 8.14, 4.07, 2.03, 14.24, 4.07, 0.68, 2.03, 4.07, 2.03] SNP counts: [10621, 32827, 5866, 11615, 1779, 9890, 5435, 6968, 14303, 18527, 3371, 3300, 8089, 6867, 15994, 23049, 14726, 1795, 16641, 2576, 1166, 8569, 4312, 3218, 3911, 23095] SNP IDs counts: [10621, 32827, 5866, 11615, 1779, 9890, 5435, 6968, 14303, 18527, 3371, 3300, 8089, 6867, 15994, 23049, 14726, 1795, 16641, 2576, 1166, 8569, 4312, 3218, 3911, 23095] Critical gap: 662122bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.19Mbp, 28.39Mbp, 31.51Mbp, 37.86Mbp, 38.81Mbp, 44.47Mbp, 47.59Mbp, 51.52Mbp, 59.45Mbp, 70.71Mbp, 72.49Mbp, 74.34Mbp, 79.04Mbp, 83.00Mbp, 91.65Mbp, 104.19Mbp, 112.69Mbp, 113.63Mbp, 122.83Mbp, 124.66Mbp, 125.28Mbp, 129.96Mbp, 132.81Mbp, 134.79Mbp, 136.86Mbp, 149.74Mbp] 2025-01-31 09:52:13,311 DEBUG chr6 time: 267.42001189501025 s 2025-01-31 09:52:13,481 DEBUG chr6: Fitting background model for 26 segments 2025-01-31 09:52:13,505 DEBUG Processing 611/753 atomic regions from SNP 183176 to 183776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,534 DEBUG Processing 524/709 atomic regions from SNP 157006 to 157606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,571 DEBUG Processing 527/738 atomic regions from SNP 157909 to 158509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,737 DEBUG Processing 612/753 atomic regions from SNP 183476 to 184076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,776 DEBUG Processing 525/709 atomic regions from SNP 157306 to 157906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,833 DEBUG Processing 528/738 atomic regions from SNP 158209 to 158809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,969 DEBUG Processing 613/753 atomic regions from SNP 183776 to 184376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,015 DEBUG Processing 526/709 atomic regions from SNP 157606 to 158206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,090 DEBUG Processing 529/738 atomic regions from SNP 158509 to 159109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,200 DEBUG Processing 614/753 atomic regions from SNP 184076 to 184676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,257 DEBUG Processing 527/709 atomic regions from SNP 157906 to 158506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,363 DEBUG Processing 530/738 atomic regions from SNP 158809 to 159409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,433 DEBUG Processing 615/753 atomic regions from SNP 184376 to 184976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,494 DEBUG Processing 528/709 atomic regions from SNP 158206 to 158806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,628 DEBUG Processing 531/738 atomic regions from SNP 159109 to 159709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,670 DEBUG Processing 616/753 atomic regions from SNP 184676 to 185276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,748 DEBUG Processing 529/709 atomic regions from SNP 158506 to 159106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,888 DEBUG Processing 532/738 atomic regions from SNP 159409 to 160009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,913 DEBUG Processing 617/753 atomic regions from SNP 184976 to 185576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,008 DEBUG Processing 530/709 atomic regions from SNP 158806 to 159406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,152 DEBUG Processing 533/738 atomic regions from SNP 159709 to 160309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,152 DEBUG Processing 618/753 atomic regions from SNP 185276 to 185876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,258 DEBUG Processing 531/709 atomic regions from SNP 159106 to 159706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,392 DEBUG Processing 619/753 atomic regions from SNP 185576 to 186176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,414 DEBUG Processing 534/738 atomic regions from SNP 160009 to 160609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,506 DEBUG Processing 532/709 atomic regions from SNP 159406 to 160006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,634 DEBUG Processing 620/753 atomic regions from SNP 185876 to 186476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,664 DEBUG Processing 535/738 atomic regions from SNP 160309 to 160909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,750 DEBUG Processing 533/709 atomic regions from SNP 159706 to 160306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,874 DEBUG Processing 621/753 atomic regions from SNP 186176 to 186776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,928 DEBUG Processing 536/738 atomic regions from SNP 160609 to 161209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,000 DEBUG Processing 534/709 atomic regions from SNP 160006 to 160606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,113 DEBUG Processing 622/753 atomic regions from SNP 186476 to 187076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,184 DEBUG Processing 537/738 atomic regions from SNP 160909 to 161509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,245 DEBUG Processing 535/709 atomic regions from SNP 160306 to 160906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,360 DEBUG Processing 623/753 atomic regions from SNP 186776 to 187376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,435 DEBUG Processing 538/738 atomic regions from SNP 161209 to 161809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,490 DEBUG Processing 536/709 atomic regions from SNP 160606 to 161206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,604 DEBUG Processing 624/753 atomic regions from SNP 187076 to 187676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,672 DEBUG Processing 539/738 atomic regions from SNP 161509 to 162109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,736 DEBUG Processing 537/709 atomic regions from SNP 160906 to 161506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,846 DEBUG Processing 625/753 atomic regions from SNP 187376 to 187976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,906 DEBUG Processing 540/738 atomic regions from SNP 161809 to 162409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,979 DEBUG Processing 538/709 atomic regions from SNP 161206 to 161806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,092 DEBUG Processing 626/753 atomic regions from SNP 187676 to 188276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,148 DEBUG Processing 541/738 atomic regions from SNP 162109 to 162709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,217 DEBUG Processing 539/709 atomic regions from SNP 161506 to 162106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,338 DEBUG Processing 627/753 atomic regions from SNP 187976 to 188576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,387 DEBUG Processing 542/738 atomic regions from SNP 162409 to 163009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,456 DEBUG Processing 540/709 atomic regions from SNP 161806 to 162406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,585 DEBUG Processing 628/753 atomic regions from SNP 188276 to 188876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,631 DEBUG Processing 543/738 atomic regions from SNP 162709 to 163309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,701 DEBUG Processing 541/709 atomic regions from SNP 162106 to 162706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,830 DEBUG Processing 629/753 atomic regions from SNP 188576 to 189176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,881 DEBUG Processing 544/738 atomic regions from SNP 163009 to 163609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,952 DEBUG Processing 542/709 atomic regions from SNP 162406 to 163006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,071 DEBUG Processing 630/753 atomic regions from SNP 188876 to 189476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,125 DEBUG Processing 545/738 atomic regions from SNP 163309 to 163909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,196 DEBUG Processing 543/709 atomic regions from SNP 162706 to 163306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,305 DEBUG Processing 631/753 atomic regions from SNP 189176 to 189776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,366 DEBUG Processing 546/738 atomic regions from SNP 163609 to 164209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,446 DEBUG Processing 544/709 atomic regions from SNP 163006 to 163606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,546 DEBUG Processing 632/753 atomic regions from SNP 189476 to 190076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,611 DEBUG Processing 547/738 atomic regions from SNP 163909 to 164509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,716 DEBUG Processing 545/709 atomic regions from SNP 163306 to 163906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,790 DEBUG Processing 633/753 atomic regions from SNP 189776 to 190376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,873 DEBUG Processing 548/738 atomic regions from SNP 164209 to 164809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,981 DEBUG Processing 546/709 atomic regions from SNP 163606 to 164206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,036 DEBUG Processing 634/753 atomic regions from SNP 190076 to 190676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,114 DEBUG Processing 549/738 atomic regions from SNP 164509 to 165109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,236 DEBUG Processing 547/709 atomic regions from SNP 163906 to 164506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,288 DEBUG Processing 635/753 atomic regions from SNP 190376 to 190976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,360 DEBUG Processing 550/738 atomic regions from SNP 164809 to 165409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,484 DEBUG Processing 548/709 atomic regions from SNP 164206 to 164806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,534 DEBUG Processing 636/753 atomic regions from SNP 190676 to 191276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,603 DEBUG Processing 551/738 atomic regions from SNP 165109 to 165709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,732 DEBUG Processing 549/709 atomic regions from SNP 164506 to 165106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,785 DEBUG Processing 637/753 atomic regions from SNP 190976 to 191576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,850 DEBUG Processing 552/738 atomic regions from SNP 165409 to 166009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,985 DEBUG Processing 550/709 atomic regions from SNP 164806 to 165406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,051 DEBUG Processing 638/753 atomic regions from SNP 191276 to 191876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,094 DEBUG Processing 553/738 atomic regions from SNP 165709 to 166309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,234 DEBUG Processing 551/709 atomic regions from SNP 165106 to 165706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,300 DEBUG Processing 639/753 atomic regions from SNP 191576 to 192176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,343 DEBUG Processing 554/738 atomic regions from SNP 166009 to 166609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,483 DEBUG Processing 552/709 atomic regions from SNP 165406 to 166006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,548 DEBUG Processing 640/753 atomic regions from SNP 191876 to 192476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,591 DEBUG Processing 555/738 atomic regions from SNP 166309 to 166909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,737 DEBUG Processing 553/709 atomic regions from SNP 165706 to 166306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,822 DEBUG Processing 641/753 atomic regions from SNP 192176 to 192776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,848 DEBUG Processing 556/738 atomic regions from SNP 166609 to 167209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,980 DEBUG Processing 554/709 atomic regions from SNP 166006 to 166606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,067 DEBUG Processing 642/753 atomic regions from SNP 192476 to 193076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,093 DEBUG Processing 557/738 atomic regions from SNP 166909 to 167509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,221 DEBUG Processing 555/709 atomic regions from SNP 166306 to 166906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,320 DEBUG Processing 643/753 atomic regions from SNP 192776 to 193376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,334 DEBUG Processing 558/738 atomic regions from SNP 167209 to 167809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,465 DEBUG Processing 556/709 atomic regions from SNP 166606 to 167206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,564 DEBUG Processing 644/753 atomic regions from SNP 193076 to 193676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,582 DEBUG Processing 559/738 atomic regions from SNP 167509 to 168109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,707 DEBUG Processing 557/709 atomic regions from SNP 166906 to 167506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,802 DEBUG Processing 645/753 atomic regions from SNP 193376 to 193976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,825 DEBUG Processing 560/738 atomic regions from SNP 167809 to 168409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,972 DEBUG Processing 558/709 atomic regions from SNP 167206 to 167806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,039 DEBUG Processing 646/753 atomic regions from SNP 193676 to 194276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,064 DEBUG Processing 561/738 atomic regions from SNP 168109 to 168709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,241 DEBUG Processing 559/709 atomic regions from SNP 167506 to 168106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,273 DEBUG Processing 647/753 atomic regions from SNP 193976 to 194576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,301 DEBUG Processing 562/738 atomic regions from SNP 168409 to 169009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,493 DEBUG Processing 560/709 atomic regions from SNP 167806 to 168406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,514 DEBUG Processing 648/753 atomic regions from SNP 194276 to 194876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,547 DEBUG Processing 563/738 atomic regions from SNP 168709 to 169309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,743 DEBUG Processing 561/709 atomic regions from SNP 168106 to 168706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,759 DEBUG Processing 649/753 atomic regions from SNP 194576 to 195176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,790 DEBUG Processing 564/738 atomic regions from SNP 169009 to 169609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,848 DEBUG Segmenting atomic regions: 2025-01-31 09:52:22,956 DEBUG Processing 1/670 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,001 DEBUG Processing 650/753 atomic regions from SNP 194876 to 195476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,008 DEBUG Processing 562/709 atomic regions from SNP 168406 to 169006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,032 DEBUG Processing 565/738 atomic regions from SNP 169309 to 169909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,191 DEBUG Processing 2/670 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,244 DEBUG Processing 651/753 atomic regions from SNP 195176 to 195776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,254 DEBUG Processing 563/709 atomic regions from SNP 168706 to 169306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,278 DEBUG Processing 566/738 atomic regions from SNP 169609 to 170209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,424 DEBUG Processing 3/670 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,493 DEBUG Processing 652/753 atomic regions from SNP 195476 to 196076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,504 DEBUG Processing 564/709 atomic regions from SNP 169006 to 169606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,528 DEBUG Processing 567/738 atomic regions from SNP 169909 to 170509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,658 DEBUG Processing 4/670 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,736 DEBUG Processing 653/753 atomic regions from SNP 195776 to 196376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,754 DEBUG Processing 565/709 atomic regions from SNP 169306 to 169906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,778 DEBUG Processing 568/738 atomic regions from SNP 170209 to 170809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,793 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:52:23,794 DEBUG chr9: Signal quantile: 0.991. signal threshold: 17. Best RMSEA: 0.016 2025-01-31 09:52:23,909 DEBUG Processing 5/670 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,987 DEBUG Processing 654/753 atomic regions from SNP 196076 to 196676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,035 DEBUG Processing 566/709 atomic regions from SNP 169606 to 170206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,038 DEBUG Processing 569/738 atomic regions from SNP 170509 to 171109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,143 DEBUG Processing 6/670 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,221 DEBUG Processing 655/753 atomic regions from SNP 196376 to 196976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,290 DEBUG Processing 570/738 atomic regions from SNP 170809 to 171409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,297 DEBUG Processing 567/709 atomic regions from SNP 169906 to 170506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,376 DEBUG Processing 7/670 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,450 DEBUG Processing 656/753 atomic regions from SNP 196676 to 197276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,536 DEBUG Processing 571/738 atomic regions from SNP 171109 to 171709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,548 DEBUG Processing 568/709 atomic regions from SNP 170206 to 170806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,624 DEBUG Processing 8/670 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,677 DEBUG Processing 657/753 atomic regions from SNP 196976 to 197576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,773 DEBUG Processing 572/738 atomic regions from SNP 171409 to 172009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,790 DEBUG Processing 569/709 atomic regions from SNP 170506 to 171106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,858 DEBUG Processing 9/670 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,912 DEBUG Processing 658/753 atomic regions from SNP 197276 to 197876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,008 DEBUG Processing 573/738 atomic regions from SNP 171709 to 172309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,030 DEBUG Processing 570/709 atomic regions from SNP 170806 to 171406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,101 DEBUG Processing 10/670 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,154 DEBUG Processing 659/753 atomic regions from SNP 197576 to 198176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,247 DEBUG Processing 574/738 atomic regions from SNP 172009 to 172609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,272 DEBUG Processing 571/709 atomic regions from SNP 171106 to 171706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,339 DEBUG Processing 11/670 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,396 DEBUG Processing 660/753 atomic regions from SNP 197876 to 198476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,497 DEBUG Processing 575/738 atomic regions from SNP 172309 to 172909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,514 DEBUG Processing 572/709 atomic regions from SNP 171406 to 172006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,572 DEBUG Processing 12/670 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,643 DEBUG Processing 661/753 atomic regions from SNP 198176 to 198776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,731 DEBUG Processing 576/738 atomic regions from SNP 172609 to 173209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,755 DEBUG Processing 573/709 atomic regions from SNP 171706 to 172306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,801 DEBUG Processing 13/670 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,870 DEBUG Processing 662/753 atomic regions from SNP 198476 to 199076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,971 DEBUG Processing 577/738 atomic regions from SNP 172909 to 173509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,019 DEBUG Processing 574/709 atomic regions from SNP 172006 to 172606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,047 DEBUG Processing 14/670 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,133 DEBUG Processing 663/753 atomic regions from SNP 198776 to 199376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,215 DEBUG Processing 578/738 atomic regions from SNP 173209 to 173809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,284 DEBUG chr9 total SNP count: 219035 2025-01-31 09:52:26,285 DEBUG chr9 length: 124595110 2025-01-31 09:52:26,285 DEBUG ----------------------------------------- 2025-01-31 09:52:26,285 INFO Processing SNPs in chr9 2025-01-31 09:52:26,297 DEBUG Processing 15/670 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,306 DEBUG Processing 575/709 atomic regions from SNP 172306 to 172906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,405 DEBUG Processing 664/753 atomic regions from SNP 199076 to 199676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,444 DEBUG Processing 579/738 atomic regions from SNP 173509 to 174109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,520 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 219035)] 2025-01-31 09:52:26,541 DEBUG Processing 16/670 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,558 DEBUG Processing 576/709 atomic regions from SNP 172606 to 173206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,646 DEBUG Processing 665/753 atomic regions from SNP 199376 to 199976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,678 DEBUG Processing 580/738 atomic regions from SNP 173809 to 174409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,682 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:26,780 DEBUG Processing 17/670 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,805 DEBUG Processing 577/709 atomic regions from SNP 172906 to 173506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,884 DEBUG Processing 666/753 atomic regions from SNP 199676 to 200276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,914 DEBUG Processing 581/738 atomic regions from SNP 174109 to 174709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,009 DEBUG Processing 18/670 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,045 DEBUG Processing 578/709 atomic regions from SNP 173206 to 173806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,126 DEBUG Processing 667/753 atomic regions from SNP 199976 to 200576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,152 DEBUG Processing 582/738 atomic regions from SNP 174409 to 175009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,237 DEBUG Processing 19/670 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,281 DEBUG Processing 579/709 atomic regions from SNP 173506 to 174106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,370 DEBUG Processing 668/753 atomic regions from SNP 200276 to 200876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,393 DEBUG Processing 583/738 atomic regions from SNP 174709 to 175309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,470 DEBUG Processing 20/670 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,526 DEBUG Processing 580/709 atomic regions from SNP 173806 to 174406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,618 DEBUG Processing 669/753 atomic regions from SNP 200576 to 201176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,643 DEBUG Processing 584/738 atomic regions from SNP 175009 to 175609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,713 DEBUG Processing 21/670 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,776 DEBUG Processing 581/709 atomic regions from SNP 174106 to 174706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,869 DEBUG Processing 670/753 atomic regions from SNP 200876 to 201476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,900 DEBUG Processing 585/738 atomic regions from SNP 175309 to 175909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,960 DEBUG Processing 22/670 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,031 DEBUG Processing 582/709 atomic regions from SNP 174406 to 175006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,116 DEBUG Processing 671/753 atomic regions from SNP 201176 to 201776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,164 DEBUG Processing 586/738 atomic regions from SNP 175609 to 176209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,206 DEBUG Processing 23/670 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,292 DEBUG Processing 583/709 atomic regions from SNP 174706 to 175306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,373 DEBUG Processing 672/753 atomic regions from SNP 201476 to 202076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,426 DEBUG Processing 587/738 atomic regions from SNP 175909 to 176509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,453 DEBUG Processing 24/670 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,540 DEBUG Processing 584/709 atomic regions from SNP 175006 to 175606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,625 DEBUG Processing 673/753 atomic regions from SNP 201776 to 202376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,699 DEBUG Processing 25/670 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,707 DEBUG Processing 588/738 atomic regions from SNP 176209 to 176809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,789 DEBUG Processing 585/709 atomic regions from SNP 175306 to 175906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,894 DEBUG Processing 674/753 atomic regions from SNP 202076 to 202676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,943 DEBUG Processing 26/670 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,957 DEBUG Processing 589/738 atomic regions from SNP 176509 to 177109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,036 DEBUG Processing 586/709 atomic regions from SNP 175606 to 176206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,150 DEBUG Processing 675/753 atomic regions from SNP 202376 to 202976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,184 DEBUG Processing 27/670 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,209 DEBUG Processing 590/738 atomic regions from SNP 176809 to 177409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,309 DEBUG Processing 587/709 atomic regions from SNP 175906 to 176506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,400 DEBUG Processing 676/753 atomic regions from SNP 202676 to 203276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,428 DEBUG Processing 28/670 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,479 DEBUG Processing 591/738 atomic regions from SNP 177109 to 177709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,573 DEBUG Processing 588/709 atomic regions from SNP 176206 to 176806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,653 DEBUG Processing 677/753 atomic regions from SNP 202976 to 203576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,673 DEBUG Processing 29/670 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,763 DEBUG Processing 592/738 atomic regions from SNP 177409 to 178009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,836 DEBUG Processing 589/709 atomic regions from SNP 176506 to 177106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,916 DEBUG Processing 30/670 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,939 DEBUG Processing 678/753 atomic regions from SNP 203276 to 203876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,044 DEBUG Processing 593/738 atomic regions from SNP 177709 to 178309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,095 DEBUG Processing 590/709 atomic regions from SNP 176806 to 177406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,166 DEBUG Processing 31/670 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,223 DEBUG Processing 679/753 atomic regions from SNP 203576 to 204176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,331 DEBUG Processing 594/738 atomic regions from SNP 178009 to 178609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,361 DEBUG Processing 591/709 atomic regions from SNP 177106 to 177706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,412 DEBUG Processing 32/670 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,470 DEBUG Processing 680/753 atomic regions from SNP 203876 to 204476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,617 DEBUG Processing 595/738 atomic regions from SNP 178309 to 178909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,636 DEBUG Processing 592/709 atomic regions from SNP 177406 to 178006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,659 DEBUG Processing 33/670 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,720 DEBUG Processing 681/753 atomic regions from SNP 204176 to 204776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,895 DEBUG Processing 596/738 atomic regions from SNP 178609 to 179209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,904 DEBUG Processing 34/670 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,926 DEBUG Processing 593/709 atomic regions from SNP 177706 to 178306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,972 DEBUG Processing 682/753 atomic regions from SNP 204476 to 205076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,144 DEBUG Processing 35/670 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,170 DEBUG Processing 597/738 atomic regions from SNP 178909 to 179509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,211 DEBUG Processing 594/709 atomic regions from SNP 178006 to 178606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,225 DEBUG Processing 683/753 atomic regions from SNP 204776 to 205376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,383 DEBUG Processing 36/670 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,438 DEBUG Processing 598/738 atomic regions from SNP 179209 to 179809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,478 DEBUG Processing 684/753 atomic regions from SNP 205076 to 205676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,503 DEBUG Processing 595/709 atomic regions from SNP 178306 to 178906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,604 DEBUG Processing 37/670 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,690 DEBUG Processing 599/738 atomic regions from SNP 179509 to 180109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,734 DEBUG Processing 685/753 atomic regions from SNP 205376 to 205976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,790 DEBUG Processing 596/709 atomic regions from SNP 178606 to 179206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,831 DEBUG Processing 38/670 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,928 DEBUG Processing 600/738 atomic regions from SNP 179809 to 180409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,007 DEBUG Processing 686/753 atomic regions from SNP 205676 to 206276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,069 DEBUG Processing 39/670 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,079 DEBUG Processing 597/709 atomic regions from SNP 178906 to 179506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,165 DEBUG Processing 601/738 atomic regions from SNP 180109 to 180709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,277 DEBUG Processing 687/753 atomic regions from SNP 205976 to 206576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,309 DEBUG Processing 40/670 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,359 DEBUG Processing 598/709 atomic regions from SNP 179206 to 179806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,418 DEBUG Processing 602/738 atomic regions from SNP 180409 to 181009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,525 DEBUG Processing 688/753 atomic regions from SNP 206276 to 206876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,547 DEBUG Processing 41/670 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,661 DEBUG Processing 599/709 atomic regions from SNP 179506 to 180106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,677 DEBUG Processing 603/738 atomic regions from SNP 180709 to 181309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,776 DEBUG Processing 689/753 atomic regions from SNP 206576 to 207176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,788 DEBUG Processing 42/670 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,937 DEBUG Processing 604/738 atomic regions from SNP 181009 to 181609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,941 DEBUG Processing 600/709 atomic regions from SNP 179806 to 180406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,028 DEBUG Processing 690/753 atomic regions from SNP 206876 to 207476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,033 DEBUG Processing 43/670 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,213 DEBUG Processing 605/738 atomic regions from SNP 181309 to 181909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,230 DEBUG Processing 601/709 atomic regions from SNP 180106 to 180706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,280 DEBUG Processing 44/670 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,284 DEBUG Processing 691/753 atomic regions from SNP 207176 to 207776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,477 DEBUG Processing 606/738 atomic regions from SNP 181609 to 182209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,523 DEBUG Processing 602/709 atomic regions from SNP 180406 to 181006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,531 DEBUG Processing 45/670 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,541 DEBUG Processing 692/753 atomic regions from SNP 207476 to 208076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,718 DEBUG Processing 607/738 atomic regions from SNP 181909 to 182509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,779 DEBUG Processing 46/670 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,797 DEBUG Processing 693/753 atomic regions from SNP 207776 to 208376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,802 DEBUG Processing 603/709 atomic regions from SNP 180706 to 181306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,957 DEBUG Processing 608/738 atomic regions from SNP 182209 to 182809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,025 DEBUG Processing 47/670 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,052 DEBUG Processing 694/753 atomic regions from SNP 208076 to 208676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,064 DEBUG Processing 604/709 atomic regions from SNP 181006 to 181606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,188 DEBUG Processing 609/738 atomic regions from SNP 182509 to 183109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,267 DEBUG Processing 48/670 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,306 DEBUG Processing 695/753 atomic regions from SNP 208376 to 208976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,337 DEBUG Processing 605/709 atomic regions from SNP 181306 to 181906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,420 DEBUG Processing 610/738 atomic regions from SNP 182809 to 183409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,503 DEBUG Processing 49/670 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,554 DEBUG Processing 696/753 atomic regions from SNP 208676 to 209276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,619 DEBUG Processing 606/709 atomic regions from SNP 181606 to 182206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,661 DEBUG Processing 611/738 atomic regions from SNP 183109 to 183709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,736 DEBUG Processing 50/670 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,806 DEBUG Processing 697/753 atomic regions from SNP 208976 to 209576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,885 DEBUG Processing 607/709 atomic regions from SNP 181906 to 182506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,900 DEBUG Processing 612/738 atomic regions from SNP 183409 to 184009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,989 DEBUG Processing 51/670 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,051 DEBUG Processing 698/753 atomic regions from SNP 209276 to 209876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,145 DEBUG Processing 613/738 atomic regions from SNP 183709 to 184309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,148 DEBUG Processing 608/709 atomic regions from SNP 182206 to 182806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,230 DEBUG Processing 52/670 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,293 DEBUG Processing 699/753 atomic regions from SNP 209576 to 210176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,392 DEBUG Processing 614/738 atomic regions from SNP 184009 to 184609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,393 DEBUG Processing 609/709 atomic regions from SNP 182506 to 183106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,467 DEBUG Processing 53/670 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,535 DEBUG Processing 700/753 atomic regions from SNP 209876 to 210476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,638 DEBUG Processing 615/738 atomic regions from SNP 184309 to 184909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,642 DEBUG Processing 610/709 atomic regions from SNP 182806 to 183406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,708 DEBUG Processing 54/670 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,777 DEBUG Processing 701/753 atomic regions from SNP 210176 to 210776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,882 DEBUG Processing 616/738 atomic regions from SNP 184609 to 185209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,889 DEBUG Processing 611/709 atomic regions from SNP 183106 to 183706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,948 DEBUG Processing 55/670 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,015 DEBUG Processing 702/753 atomic regions from SNP 210476 to 211076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,121 DEBUG Processing 617/738 atomic regions from SNP 184909 to 185509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,132 DEBUG Processing 612/709 atomic regions from SNP 183406 to 184006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,188 DEBUG Processing 56/670 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,257 DEBUG Processing 703/753 atomic regions from SNP 210776 to 211376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,366 DEBUG Processing 618/738 atomic regions from SNP 185209 to 185809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,379 DEBUG Processing 613/709 atomic regions from SNP 183706 to 184306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,427 DEBUG Processing 57/670 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,495 DEBUG Processing 704/753 atomic regions from SNP 211076 to 211676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,625 DEBUG Processing 619/738 atomic regions from SNP 185509 to 186109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,626 DEBUG Processing 614/709 atomic regions from SNP 184006 to 184606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,669 DEBUG Processing 58/670 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,737 DEBUG Processing 705/753 atomic regions from SNP 211376 to 211976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,872 DEBUG Processing 615/709 atomic regions from SNP 184306 to 184906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,879 DEBUG Processing 620/738 atomic regions from SNP 185809 to 186409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,909 DEBUG Processing 59/670 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,982 DEBUG Processing 706/753 atomic regions from SNP 211676 to 212276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,118 DEBUG Processing 616/709 atomic regions from SNP 184606 to 185206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,139 DEBUG Processing 621/738 atomic regions from SNP 186109 to 186709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,148 DEBUG Processing 60/670 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,222 DEBUG Processing 707/753 atomic regions from SNP 211976 to 212576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,365 DEBUG Processing 617/709 atomic regions from SNP 184906 to 185506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,383 DEBUG Processing 622/738 atomic regions from SNP 186409 to 187009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,386 DEBUG Processing 61/670 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,478 DEBUG Processing 708/753 atomic regions from SNP 212276 to 212876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,617 DEBUG Processing 618/709 atomic regions from SNP 185206 to 185806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,623 DEBUG Processing 62/670 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,630 DEBUG Processing 623/738 atomic regions from SNP 186709 to 187309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,739 DEBUG Processing 709/753 atomic regions from SNP 212576 to 213176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,865 DEBUG Processing 63/670 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,878 DEBUG Processing 624/738 atomic regions from SNP 187009 to 187609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,883 DEBUG Processing 619/709 atomic regions from SNP 185506 to 186106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,988 DEBUG Processing 710/753 atomic regions from SNP 212876 to 213476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,122 DEBUG Processing 64/670 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,125 DEBUG Processing 625/738 atomic regions from SNP 187309 to 187909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,147 DEBUG Processing 620/709 atomic regions from SNP 185806 to 186406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,244 DEBUG Processing 711/753 atomic regions from SNP 213176 to 213776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,381 DEBUG Processing 626/738 atomic regions from SNP 187609 to 188209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,384 DEBUG Processing 65/670 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,414 DEBUG Processing 621/709 atomic regions from SNP 186106 to 186706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,484 DEBUG Processing 712/753 atomic regions from SNP 213476 to 214076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,621 DEBUG Processing 66/670 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,650 DEBUG Processing 627/738 atomic regions from SNP 187909 to 188509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,661 DEBUG Processing 622/709 atomic regions from SNP 186406 to 187006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,727 DEBUG Processing 713/753 atomic regions from SNP 213776 to 214376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,855 DEBUG Processing 67/670 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,908 DEBUG Processing 623/709 atomic regions from SNP 186706 to 187306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,924 DEBUG Processing 628/738 atomic regions from SNP 188209 to 188809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,971 DEBUG Processing 714/753 atomic regions from SNP 214076 to 214676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,088 DEBUG Processing 68/670 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,159 DEBUG Processing 624/709 atomic regions from SNP 187006 to 187606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,192 DEBUG Processing 629/738 atomic regions from SNP 188509 to 189109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,219 DEBUG Processing 715/753 atomic regions from SNP 214376 to 214976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,318 DEBUG Processing 69/670 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,406 DEBUG Processing 625/709 atomic regions from SNP 187306 to 187906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,460 DEBUG Processing 630/738 atomic regions from SNP 188809 to 189409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,464 DEBUG Processing 716/753 atomic regions from SNP 214676 to 215276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,546 DEBUG Processing 70/670 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,650 DEBUG Processing 626/709 atomic regions from SNP 187606 to 188206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,714 DEBUG Processing 717/753 atomic regions from SNP 214976 to 215576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,734 DEBUG Processing 631/738 atomic regions from SNP 189109 to 189709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,787 DEBUG Processing 71/670 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,893 DEBUG Processing 627/709 atomic regions from SNP 187906 to 188506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,965 DEBUG Processing 718/753 atomic regions from SNP 215276 to 215876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,001 DEBUG Processing 632/738 atomic regions from SNP 189409 to 190009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,054 DEBUG Processing 72/670 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,133 DEBUG Processing 628/709 atomic regions from SNP 188206 to 188806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,208 DEBUG Processing 719/753 atomic regions from SNP 215576 to 216176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,274 DEBUG Processing 633/738 atomic regions from SNP 189709 to 190309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,314 DEBUG Processing 73/670 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,380 DEBUG Processing 629/709 atomic regions from SNP 188506 to 189106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,454 DEBUG Processing 720/753 atomic regions from SNP 215876 to 216476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,546 DEBUG Processing 634/738 atomic regions from SNP 190009 to 190609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,583 DEBUG Processing 74/670 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,627 DEBUG Processing 630/709 atomic regions from SNP 188806 to 189406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,688 DEBUG Processing 721/753 atomic regions from SNP 216176 to 216776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,786 DEBUG Processing 635/738 atomic regions from SNP 190309 to 190909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,856 DEBUG Processing 75/670 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,896 DEBUG Processing 631/709 atomic regions from SNP 189106 to 189706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,936 DEBUG Processing 722/753 atomic regions from SNP 216476 to 217076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,031 DEBUG Processing 636/738 atomic regions from SNP 190609 to 191209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,130 DEBUG Processing 76/670 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,171 DEBUG Processing 632/709 atomic regions from SNP 189406 to 190006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,180 DEBUG Processing 723/753 atomic regions from SNP 216776 to 217376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,266 DEBUG Processing 637/738 atomic regions from SNP 190909 to 191509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,398 DEBUG Processing 77/670 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,424 DEBUG Processing 724/753 atomic regions from SNP 217076 to 217676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,442 DEBUG Processing 633/709 atomic regions from SNP 189706 to 190306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,504 DEBUG Processing 638/738 atomic regions from SNP 191209 to 191809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,670 DEBUG Processing 725/753 atomic regions from SNP 217376 to 217976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,674 DEBUG Processing 78/670 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,699 DEBUG Processing 634/709 atomic regions from SNP 190006 to 190606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,747 DEBUG Processing 639/738 atomic regions from SNP 191509 to 192109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,916 DEBUG Processing 726/753 atomic regions from SNP 217676 to 218276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,941 DEBUG Processing 79/670 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,971 DEBUG Processing 635/709 atomic regions from SNP 190306 to 190906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,995 DEBUG Processing 640/738 atomic regions from SNP 191809 to 192409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,155 DEBUG Processing 727/753 atomic regions from SNP 217976 to 218576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,211 DEBUG Processing 80/670 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,220 DEBUG Processing 636/709 atomic regions from SNP 190606 to 191206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,232 DEBUG Processing 641/738 atomic regions from SNP 192109 to 192709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,394 DEBUG Processing 728/753 atomic regions from SNP 218276 to 218876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,462 DEBUG Processing 81/670 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,464 DEBUG Processing 637/709 atomic regions from SNP 190906 to 191506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,474 DEBUG Processing 642/738 atomic regions from SNP 192409 to 193009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,638 DEBUG Processing 729/753 atomic regions from SNP 218576 to 219176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,698 DEBUG Processing 82/670 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,713 DEBUG Processing 643/738 atomic regions from SNP 192709 to 193309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,726 DEBUG Processing 638/709 atomic regions from SNP 191206 to 191806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,883 DEBUG Processing 730/753 atomic regions from SNP 218876 to 219476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,952 DEBUG Processing 644/738 atomic regions from SNP 193009 to 193609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,964 DEBUG Processing 83/670 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,993 DEBUG Processing 639/709 atomic regions from SNP 191506 to 192106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,127 DEBUG Processing 731/753 atomic regions from SNP 219176 to 219776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,194 DEBUG Processing 645/738 atomic regions from SNP 193309 to 193909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,228 DEBUG Processing 84/670 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,232 DEBUG Processing 640/709 atomic regions from SNP 191806 to 192406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,374 DEBUG Processing 732/753 atomic regions from SNP 219476 to 220076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,449 DEBUG Processing 646/738 atomic regions from SNP 193609 to 194209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,482 DEBUG Processing 641/709 atomic regions from SNP 192106 to 192706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,502 DEBUG Processing 85/670 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,647 DEBUG Processing 733/753 atomic regions from SNP 219776 to 220376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,705 DEBUG Processing 647/738 atomic regions from SNP 193909 to 194509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,735 DEBUG Processing 642/709 atomic regions from SNP 192406 to 193006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,765 DEBUG Processing 86/670 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,931 DEBUG Processing 734/753 atomic regions from SNP 220076 to 220676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,959 DEBUG Processing 648/738 atomic regions from SNP 194209 to 194809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,988 DEBUG Processing 643/709 atomic regions from SNP 192706 to 193306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,013 DEBUG Processing 87/670 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,215 DEBUG Processing 649/738 atomic regions from SNP 194509 to 195109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,219 DEBUG Processing 735/753 atomic regions from SNP 220376 to 220976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,243 DEBUG Processing 644/709 atomic regions from SNP 193006 to 193606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,257 DEBUG Processing 88/670 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,468 DEBUG Processing 650/738 atomic regions from SNP 194809 to 195409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,499 DEBUG Processing 645/709 atomic regions from SNP 193306 to 193906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,506 DEBUG Processing 89/670 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,507 DEBUG Processing 736/753 atomic regions from SNP 220676 to 221276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,710 DEBUG Processing 651/738 atomic regions from SNP 195109 to 195709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,747 DEBUG Processing 646/709 atomic regions from SNP 193606 to 194206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,753 DEBUG Processing 90/670 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,779 DEBUG Processing 737/753 atomic regions from SNP 220976 to 221576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,982 DEBUG Processing 652/738 atomic regions from SNP 195409 to 196009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,036 DEBUG Processing 647/709 atomic regions from SNP 193906 to 194506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,103 DEBUG Processing 91/670 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,188 DEBUG Processing 738/753 atomic regions from SNP 221276 to 221876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,285 DEBUG Processing 648/709 atomic regions from SNP 194206 to 194806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,288 DEBUG Processing 653/738 atomic regions from SNP 195709 to 196309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,335 DEBUG Processing 92/670 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,442 DEBUG Processing 739/753 atomic regions from SNP 221576 to 222176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,530 DEBUG Processing 654/738 atomic regions from SNP 196009 to 196609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,531 DEBUG Processing 649/709 atomic regions from SNP 194506 to 195106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,566 DEBUG Processing 93/670 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,702 DEBUG Processing 740/753 atomic regions from SNP 221876 to 222476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,785 DEBUG Processing 655/738 atomic regions from SNP 196309 to 196909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,786 DEBUG Processing 650/709 atomic regions from SNP 194806 to 195406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,816 DEBUG Processing 94/670 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,977 DEBUG Processing 741/753 atomic regions from SNP 222176 to 222776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,028 DEBUG Processing 656/738 atomic regions from SNP 196609 to 197209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,055 DEBUG Processing 95/670 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,058 DEBUG Processing 651/709 atomic regions from SNP 195106 to 195706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,253 DEBUG Processing 742/753 atomic regions from SNP 222476 to 223076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,277 DEBUG Processing 657/738 atomic regions from SNP 196909 to 197509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,300 DEBUG Processing 96/670 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,332 DEBUG Processing 652/709 atomic regions from SNP 195406 to 196006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,523 DEBUG Processing 658/738 atomic regions from SNP 197209 to 197809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,533 DEBUG Processing 743/753 atomic regions from SNP 222776 to 223376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,542 DEBUG Processing 97/670 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,585 DEBUG Processing 653/709 atomic regions from SNP 195706 to 196306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,777 DEBUG Processing 659/738 atomic regions from SNP 197509 to 198109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,791 DEBUG Processing 98/670 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,816 DEBUG Processing 744/753 atomic regions from SNP 223076 to 223676 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,846 DEBUG Processing 654/709 atomic regions from SNP 196006 to 196606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,027 DEBUG Processing 660/738 atomic regions from SNP 197809 to 198409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,028 DEBUG Processing 99/670 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,095 DEBUG Processing 745/753 atomic regions from SNP 223376 to 223976 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,120 DEBUG Processing 655/709 atomic regions from SNP 196306 to 196906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,262 DEBUG Processing 100/670 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,266 DEBUG Processing 661/738 atomic regions from SNP 198109 to 198709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,366 DEBUG Processing 746/753 atomic regions from SNP 223676 to 224276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,371 DEBUG Processing 656/709 atomic regions from SNP 196606 to 197206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,496 DEBUG Processing 101/670 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,516 DEBUG Processing 662/738 atomic regions from SNP 198409 to 199009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,606 DEBUG Processing 747/753 atomic regions from SNP 223976 to 224576 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,613 DEBUG Processing 657/709 atomic regions from SNP 196906 to 197506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,740 DEBUG Processing 102/670 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,790 DEBUG Processing 663/738 atomic regions from SNP 198709 to 199309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,848 DEBUG Processing 748/753 atomic regions from SNP 224276 to 224876 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,857 DEBUG Processing 658/709 atomic regions from SNP 197206 to 197806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,979 DEBUG Processing 103/670 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,066 DEBUG Processing 664/738 atomic regions from SNP 199009 to 199609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,087 DEBUG Processing 749/753 atomic regions from SNP 224576 to 225176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,098 DEBUG Processing 659/709 atomic regions from SNP 197506 to 198106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,211 DEBUG Processing 104/670 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,321 DEBUG Processing 750/753 atomic regions from SNP 224876 to 225476 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,333 DEBUG Processing 660/709 atomic regions from SNP 197806 to 198406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,335 DEBUG Processing 665/738 atomic regions from SNP 199309 to 199909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,439 DEBUG Processing 105/670 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,557 DEBUG Processing 751/753 atomic regions from SNP 225176 to 225776 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,569 DEBUG Processing 661/709 atomic regions from SNP 198106 to 198706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,592 DEBUG Processing 666/738 atomic regions from SNP 199609 to 200209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,672 DEBUG Processing 106/670 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,797 DEBUG Processing 752/753 atomic regions from SNP 225476 to 226076 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,809 DEBUG Processing 662/709 atomic regions from SNP 198406 to 199006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,839 DEBUG Processing 667/738 atomic regions from SNP 199909 to 200509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,907 DEBUG Processing 107/670 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,038 DEBUG Processing 753/753 atomic regions from SNP 225776 to 226376 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,048 DEBUG Processing 663/709 atomic regions from SNP 198706 to 199306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,075 DEBUG Processing 668/738 atomic regions from SNP 200209 to 200809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,131 DEBUG Processing 108/670 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,182 DEBUG Unique SNPs positions in subchromosome 1: 226377 2025-01-31 09:52:49,290 DEBUG Processing 664/709 atomic regions from SNP 199006 to 199606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,319 DEBUG Processing 669/738 atomic regions from SNP 200509 to 201109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,372 DEBUG Processing 109/670 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,532 DEBUG Processing 665/709 atomic regions from SNP 199306 to 199906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,556 DEBUG Processing 670/738 atomic regions from SNP 200809 to 201409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,605 DEBUG Processing 110/670 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,773 DEBUG Processing 666/709 atomic regions from SNP 199606 to 200206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,793 DEBUG Processing 671/738 atomic regions from SNP 201109 to 201709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,844 DEBUG Processing 111/670 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,006 DEBUG Processing 667/709 atomic regions from SNP 199906 to 200506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,027 DEBUG Processing 672/738 atomic regions from SNP 201409 to 202009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,097 DEBUG Processing 112/670 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,236 DEBUG Processing 668/709 atomic regions from SNP 200206 to 200806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,273 DEBUG Processing 673/738 atomic regions from SNP 201709 to 202309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,328 DEBUG Processing 113/670 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,458 DEBUG Processing 669/709 atomic regions from SNP 200506 to 201106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,513 DEBUG Processing 674/738 atomic regions from SNP 202009 to 202609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,563 DEBUG Processing 114/670 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,683 DEBUG Processing 670/709 atomic regions from SNP 200806 to 201406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,739 DEBUG Processing 675/738 atomic regions from SNP 202309 to 202909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,797 DEBUG Processing 115/670 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,926 DEBUG Processing 671/709 atomic regions from SNP 201106 to 201706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,965 DEBUG Processing 676/738 atomic regions from SNP 202609 to 203209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,022 DEBUG Processing 116/670 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,163 DEBUG Processing 672/709 atomic regions from SNP 201406 to 202006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,196 DEBUG Processing 677/738 atomic regions from SNP 202909 to 203509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,244 DEBUG Processing 117/670 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,389 DEBUG Processing 673/709 atomic regions from SNP 201706 to 202306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,450 DEBUG Processing 678/738 atomic regions from SNP 203209 to 203809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,465 DEBUG Processing 118/670 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,615 DEBUG Processing 674/709 atomic regions from SNP 202006 to 202606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,686 DEBUG Processing 119/670 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,713 DEBUG Processing 679/738 atomic regions from SNP 203509 to 204109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,846 DEBUG Processing 675/709 atomic regions from SNP 202306 to 202906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,907 DEBUG Processing 120/670 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,981 DEBUG Processing 680/738 atomic regions from SNP 203809 to 204409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,080 DEBUG Processing 676/709 atomic regions from SNP 202606 to 203206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,127 DEBUG Processing 121/670 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,236 DEBUG Processing 681/738 atomic regions from SNP 204109 to 204709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,316 DEBUG Processing 677/709 atomic regions from SNP 202906 to 203506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,349 DEBUG Processing 122/670 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,502 DEBUG Processing 682/738 atomic regions from SNP 204409 to 205009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,575 DEBUG Processing 678/709 atomic regions from SNP 203206 to 203806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,582 DEBUG Processing 123/670 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,766 DEBUG Processing 683/738 atomic regions from SNP 204709 to 205309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,806 DEBUG Processing 124/670 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,823 DEBUG Processing 679/709 atomic regions from SNP 203506 to 204106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,039 DEBUG Processing 125/670 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,047 DEBUG Processing 684/738 atomic regions from SNP 205009 to 205609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,074 DEBUG Processing 680/709 atomic regions from SNP 203806 to 204406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,267 DEBUG Processing 126/670 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,307 DEBUG Processing 681/709 atomic regions from SNP 204106 to 204706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,320 DEBUG Processing 685/738 atomic regions from SNP 205309 to 205909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,487 DEBUG Processing 127/670 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,541 DEBUG Processing 682/709 atomic regions from SNP 204406 to 205006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,585 DEBUG Processing 686/738 atomic regions from SNP 205609 to 206209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,700 DEBUG Processing 128/670 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,791 DEBUG Processing 683/709 atomic regions from SNP 204706 to 205306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,863 DEBUG Processing 687/738 atomic regions from SNP 205909 to 206509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,914 DEBUG Processing 129/670 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,979 DEBUG Subchromosome time: 220.62064720492344, subchromosome SNPs: 226377 2025-01-31 09:52:53,979 DEBUG Estimated BADs: [2.07, 20.66, 2.07, 1.03, 4.13, 2.07, 0.41, 1.03, 4.13, 0.52, 2.07, 4.13, 18.59, 4.13, 2.07, 0.52, 1.03, 2.07, 1.03, 8.26, 1.03] SNP counts: [4717, 174, 47874, 11759, 7146, 6272, 4223, 14123, 11087, 1798, 18347, 7452, 4096, 8601, 25998, 6288, 18712, 16404, 4783, 4512, 2011] SNP IDs counts: [4717, 174, 47874, 11759, 7146, 6272, 4223, 14123, 11087, 1798, 18347, 7452, 4096, 8601, 25998, 6288, 18712, 16404, 4783, 4512, 2011] Critical gap: 615508bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 5.76Mbp, 5.85Mbp, 33.02Mbp, 39.73Mbp, 43.54Mbp, 47.02Mbp, 49.61Mbp, 58.22Mbp, 64.14Mbp, 65.31Mbp, 75.50Mbp, 79.61Mbp, 82.08Mbp, 86.83Mbp, 101.07Mbp, 104.75Mbp, 115.24Mbp, 124.22Mbp, 126.90Mbp, 129.35Mbp, 130.69Mbp] 2025-01-31 09:52:53,979 DEBUG chr10 time: 220.6211955449544 s 2025-01-31 09:52:54,044 DEBUG Processing 684/709 atomic regions from SNP 205006 to 205606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,113 DEBUG chr10: Fitting background model for 21 segments 2025-01-31 09:52:54,114 DEBUG Processing 688/738 atomic regions from SNP 206209 to 206809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,135 DEBUG Processing 130/670 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,313 DEBUG Processing 685/709 atomic regions from SNP 205306 to 205906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,366 DEBUG Processing 131/670 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,370 DEBUG Processing 689/738 atomic regions from SNP 206509 to 207109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,464 DEBUG Segmenting atomic regions: 2025-01-31 09:52:54,562 DEBUG Processing 1/729 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,589 DEBUG Processing 686/709 atomic regions from SNP 205606 to 206206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,611 DEBUG Processing 132/670 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,629 DEBUG Processing 690/738 atomic regions from SNP 206809 to 207409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,787 DEBUG Processing 2/729 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,862 DEBUG Processing 687/709 atomic regions from SNP 205906 to 206506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,873 DEBUG Processing 133/670 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,886 DEBUG Processing 691/738 atomic regions from SNP 207109 to 207709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,015 DEBUG Processing 3/729 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,126 DEBUG Processing 134/670 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,134 DEBUG Processing 688/709 atomic regions from SNP 206206 to 206806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,152 DEBUG Processing 692/738 atomic regions from SNP 207409 to 208009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,241 DEBUG Processing 4/729 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,375 DEBUG Processing 135/670 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,400 DEBUG Processing 689/709 atomic regions from SNP 206506 to 207106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,421 DEBUG Processing 693/738 atomic regions from SNP 207709 to 208309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,468 DEBUG Processing 5/729 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,629 DEBUG Processing 136/670 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,670 DEBUG Processing 690/709 atomic regions from SNP 206806 to 207406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,700 DEBUG Processing 694/738 atomic regions from SNP 208009 to 208609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,710 DEBUG Processing 6/729 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,900 DEBUG Processing 137/670 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,934 DEBUG Processing 691/709 atomic regions from SNP 207106 to 207706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,944 DEBUG Processing 7/729 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,979 DEBUG Processing 695/738 atomic regions from SNP 208309 to 208909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,147 DEBUG Processing 138/670 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,180 DEBUG Processing 8/729 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,201 DEBUG Processing 692/709 atomic regions from SNP 207406 to 208006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,253 DEBUG Processing 696/738 atomic regions from SNP 208609 to 209209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,408 DEBUG Processing 139/670 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,418 DEBUG Processing 9/729 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,482 DEBUG Processing 693/709 atomic regions from SNP 207706 to 208306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,538 DEBUG Processing 697/738 atomic regions from SNP 208909 to 209509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,652 DEBUG Processing 10/729 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,676 DEBUG Processing 140/670 atomic regions from SNP 41839 to 42439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,742 DEBUG Processing 694/709 atomic regions from SNP 208006 to 208606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,818 DEBUG Processing 698/738 atomic regions from SNP 209209 to 209809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,888 DEBUG Processing 11/729 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,947 DEBUG Processing 141/670 atomic regions from SNP 42139 to 42739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,990 DEBUG Processing 695/709 atomic regions from SNP 208306 to 208906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,097 DEBUG Processing 699/738 atomic regions from SNP 209509 to 210109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,120 DEBUG Processing 12/729 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,215 DEBUG Processing 142/670 atomic regions from SNP 42439 to 43039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,254 DEBUG Processing 696/709 atomic regions from SNP 208606 to 209206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,353 DEBUG Processing 13/729 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,378 DEBUG Processing 700/738 atomic regions from SNP 209809 to 210409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,484 DEBUG Processing 143/670 atomic regions from SNP 42739 to 43339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,511 DEBUG Processing 697/709 atomic regions from SNP 208906 to 209506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,588 DEBUG Processing 14/729 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,656 DEBUG Processing 701/738 atomic regions from SNP 210109 to 210709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,750 DEBUG Processing 144/670 atomic regions from SNP 43039 to 43639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,789 DEBUG Processing 698/709 atomic regions from SNP 209206 to 209806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,863 DEBUG Processing 15/729 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,027 DEBUG Processing 702/738 atomic regions from SNP 210409 to 211009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,105 DEBUG Processing 145/670 atomic regions from SNP 43339 to 43939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,123 DEBUG Processing 16/729 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,123 DEBUG Processing 699/709 atomic regions from SNP 209506 to 210106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,310 DEBUG Processing 703/738 atomic regions from SNP 210709 to 211309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,367 DEBUG Processing 17/729 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,389 DEBUG Processing 146/670 atomic regions from SNP 43639 to 44239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,394 DEBUG Processing 700/709 atomic regions from SNP 209806 to 210406 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,576 DEBUG Processing 704/738 atomic regions from SNP 211009 to 211609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,601 DEBUG Processing 18/729 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,656 DEBUG Processing 147/670 atomic regions from SNP 43939 to 44539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,663 DEBUG Processing 701/709 atomic regions from SNP 210106 to 210706 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,832 DEBUG Processing 19/729 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,850 DEBUG Processing 705/738 atomic regions from SNP 211309 to 211909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,901 DEBUG Processing 148/670 atomic regions from SNP 44239 to 44839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,936 DEBUG Processing 702/709 atomic regions from SNP 210406 to 211006 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,061 DEBUG Processing 20/729 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,126 DEBUG Processing 706/738 atomic regions from SNP 211609 to 212209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,140 DEBUG Processing 149/670 atomic regions from SNP 44539 to 45139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,178 DEBUG Processing 703/709 atomic regions from SNP 210706 to 211306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,278 DEBUG Processing 21/729 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,375 DEBUG Processing 150/670 atomic regions from SNP 44839 to 45439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,405 DEBUG Processing 707/738 atomic regions from SNP 211909 to 212509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,428 DEBUG Processing 704/709 atomic regions from SNP 211006 to 211606 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,506 DEBUG Processing 22/729 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,613 DEBUG Processing 151/670 atomic regions from SNP 45139 to 45739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,683 DEBUG Processing 705/709 atomic regions from SNP 211306 to 211906 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,687 DEBUG Processing 708/738 atomic regions from SNP 212209 to 212809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,740 DEBUG Processing 23/729 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,846 DEBUG Processing 152/670 atomic regions from SNP 45439 to 46039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,937 DEBUG Processing 706/709 atomic regions from SNP 211606 to 212206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,974 DEBUG Processing 709/738 atomic regions from SNP 212509 to 213109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,981 DEBUG Processing 24/729 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,086 DEBUG Processing 153/670 atomic regions from SNP 45739 to 46339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,197 DEBUG Processing 707/709 atomic regions from SNP 211906 to 212506 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,229 DEBUG Processing 25/729 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,266 DEBUG Processing 710/738 atomic regions from SNP 212809 to 213409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,325 DEBUG Processing 154/670 atomic regions from SNP 46039 to 46639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,450 DEBUG Processing 708/709 atomic regions from SNP 212206 to 212806 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,472 DEBUG Processing 26/729 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,537 DEBUG Processing 711/738 atomic regions from SNP 213109 to 213709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,563 DEBUG Processing 155/670 atomic regions from SNP 46339 to 46939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,693 DEBUG Processing 709/709 atomic regions from SNP 212506 to 213106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,705 DEBUG Processing 27/729 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,801 DEBUG Processing 156/670 atomic regions from SNP 46639 to 47239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,802 DEBUG Processing 712/738 atomic regions from SNP 213409 to 214009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,832 DEBUG Unique SNPs positions in subchromosome 3: 213107 2025-01-31 09:53:00,946 DEBUG Processing 28/729 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,034 DEBUG Processing 157/670 atomic regions from SNP 46939 to 47539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,075 DEBUG Processing 713/738 atomic regions from SNP 213709 to 214309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,163 DEBUG Processing 29/729 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,258 DEBUG Processing 158/670 atomic regions from SNP 47239 to 47839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,320 DEBUG Processing 714/738 atomic regions from SNP 214009 to 214609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,380 DEBUG Processing 30/729 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,488 DEBUG Processing 159/670 atomic regions from SNP 47539 to 48139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,565 DEBUG Processing 715/738 atomic regions from SNP 214309 to 214909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,601 DEBUG Processing 31/729 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,725 DEBUG Processing 160/670 atomic regions from SNP 47839 to 48439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,822 DEBUG Processing 716/738 atomic regions from SNP 214609 to 215209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,830 DEBUG Processing 32/729 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,989 DEBUG Processing 161/670 atomic regions from SNP 48139 to 48739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,067 DEBUG Processing 33/729 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,089 DEBUG Processing 717/738 atomic regions from SNP 214909 to 215509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,248 DEBUG Processing 162/670 atomic regions from SNP 48439 to 49039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,297 DEBUG Processing 34/729 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,351 DEBUG Processing 718/738 atomic regions from SNP 215209 to 215809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,508 DEBUG Processing 163/670 atomic regions from SNP 48739 to 49339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,528 DEBUG Processing 35/729 atomic regions from SNP 10234 to 10834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,605 DEBUG Processing 719/738 atomic regions from SNP 215509 to 216109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,733 DEBUG Processing 164/670 atomic regions from SNP 49039 to 49639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,754 DEBUG Processing 36/729 atomic regions from SNP 10534 to 11134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,857 DEBUG Processing 720/738 atomic regions from SNP 215809 to 216409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,957 DEBUG Processing 165/670 atomic regions from SNP 49339 to 49939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,974 DEBUG Processing 37/729 atomic regions from SNP 10834 to 11434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,113 DEBUG Processing 721/738 atomic regions from SNP 216109 to 216709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,180 DEBUG Processing 166/670 atomic regions from SNP 49639 to 50239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,201 DEBUG Processing 38/729 atomic regions from SNP 11134 to 11734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,373 DEBUG Processing 722/738 atomic regions from SNP 216409 to 217009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,411 DEBUG Processing 167/670 atomic regions from SNP 49939 to 50539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,429 DEBUG Processing 39/729 atomic regions from SNP 11434 to 12034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,642 DEBUG Processing 168/670 atomic regions from SNP 50239 to 50839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,642 DEBUG Processing 723/738 atomic regions from SNP 216709 to 217309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,659 DEBUG Processing 40/729 atomic regions from SNP 11734 to 12334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,875 DEBUG Processing 169/670 atomic regions from SNP 50539 to 51139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,885 DEBUG Processing 41/729 atomic regions from SNP 12034 to 12634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,911 DEBUG Processing 724/738 atomic regions from SNP 217009 to 217609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,120 DEBUG Processing 42/729 atomic regions from SNP 12334 to 12934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,120 DEBUG Processing 170/670 atomic regions from SNP 50839 to 51439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,175 DEBUG Processing 725/738 atomic regions from SNP 217309 to 217909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,354 DEBUG Processing 43/729 atomic regions from SNP 12634 to 13234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,356 DEBUG Processing 171/670 atomic regions from SNP 51139 to 51739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,439 DEBUG Processing 726/738 atomic regions from SNP 217609 to 218209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,585 DEBUG Processing 44/729 atomic regions from SNP 12934 to 13534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,590 DEBUG Processing 172/670 atomic regions from SNP 51439 to 52039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,673 DEBUG Processing 727/738 atomic regions from SNP 217909 to 218509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,817 DEBUG Processing 45/729 atomic regions from SNP 13234 to 13834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,825 DEBUG Processing 173/670 atomic regions from SNP 51739 to 52339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,908 DEBUG Processing 728/738 atomic regions from SNP 218209 to 218809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,052 DEBUG Processing 46/729 atomic regions from SNP 13534 to 14134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,060 DEBUG Processing 174/670 atomic regions from SNP 52039 to 52639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,141 DEBUG Processing 729/738 atomic regions from SNP 218509 to 219109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,284 DEBUG Processing 47/729 atomic regions from SNP 13834 to 14434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,295 DEBUG Processing 175/670 atomic regions from SNP 52339 to 52939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,379 DEBUG Processing 730/738 atomic regions from SNP 218809 to 219409 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,512 DEBUG Processing 48/729 atomic regions from SNP 14134 to 14734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,533 DEBUG Processing 176/670 atomic regions from SNP 52639 to 53239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,629 DEBUG Processing 731/738 atomic regions from SNP 219109 to 219709 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,747 DEBUG Processing 49/729 atomic regions from SNP 14434 to 15034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,795 DEBUG Processing 177/670 atomic regions from SNP 52939 to 53539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,876 DEBUG Processing 732/738 atomic regions from SNP 219409 to 220009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,973 DEBUG Processing 50/729 atomic regions from SNP 14734 to 15334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,044 DEBUG Processing 178/670 atomic regions from SNP 53239 to 53839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,128 DEBUG Processing 733/738 atomic regions from SNP 219709 to 220309 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,205 DEBUG Processing 51/729 atomic regions from SNP 15034 to 15634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,274 DEBUG Processing 179/670 atomic regions from SNP 53539 to 54139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,377 DEBUG Processing 734/738 atomic regions from SNP 220009 to 220609 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,441 DEBUG Processing 52/729 atomic regions from SNP 15334 to 15934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,505 DEBUG Processing 180/670 atomic regions from SNP 53839 to 54439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,630 DEBUG Processing 735/738 atomic regions from SNP 220309 to 220909 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,682 DEBUG Processing 53/729 atomic regions from SNP 15634 to 16234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,732 DEBUG Processing 181/670 atomic regions from SNP 54139 to 54739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,880 DEBUG Processing 736/738 atomic regions from SNP 220609 to 221209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,917 DEBUG Processing 54/729 atomic regions from SNP 15934 to 16534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,964 DEBUG Processing 182/670 atomic regions from SNP 54439 to 55039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,148 DEBUG Processing 737/738 atomic regions from SNP 220909 to 221509 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,160 DEBUG Processing 55/729 atomic regions from SNP 16234 to 16834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,203 DEBUG Processing 183/670 atomic regions from SNP 54739 to 55339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,400 DEBUG Processing 738/738 atomic regions from SNP 221209 to 221809 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,403 DEBUG Processing 56/729 atomic regions from SNP 16534 to 17134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,445 DEBUG Processing 184/670 atomic regions from SNP 55039 to 55639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,557 DEBUG Unique SNPs positions in subchromosome 1: 221810 2025-01-31 09:53:07,650 DEBUG Processing 57/729 atomic regions from SNP 16834 to 17434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,695 DEBUG Processing 185/670 atomic regions from SNP 55339 to 55939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,883 DEBUG Processing 58/729 atomic regions from SNP 17134 to 17734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,934 DEBUG Processing 186/670 atomic regions from SNP 55639 to 56239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,113 DEBUG Processing 59/729 atomic regions from SNP 17434 to 18034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,165 DEBUG Processing 187/670 atomic regions from SNP 55939 to 56539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,341 DEBUG Processing 60/729 atomic regions from SNP 17734 to 18334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,400 DEBUG Processing 188/670 atomic regions from SNP 56239 to 56839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,601 DEBUG Processing 61/729 atomic regions from SNP 18034 to 18634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,641 DEBUG Processing 189/670 atomic regions from SNP 56539 to 57139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,845 DEBUG Processing 62/729 atomic regions from SNP 18334 to 18934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,875 DEBUG Processing 190/670 atomic regions from SNP 56839 to 57439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,091 DEBUG Processing 63/729 atomic regions from SNP 18634 to 19234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,115 DEBUG Processing 191/670 atomic regions from SNP 57139 to 57739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,347 DEBUG Processing 64/729 atomic regions from SNP 18934 to 19534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,368 DEBUG Processing 192/670 atomic regions from SNP 57439 to 58039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,588 DEBUG Processing 65/729 atomic regions from SNP 19234 to 19834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,618 DEBUG Processing 193/670 atomic regions from SNP 57739 to 58339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,821 DEBUG Processing 66/729 atomic regions from SNP 19534 to 20134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,852 DEBUG Processing 194/670 atomic regions from SNP 58039 to 58639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,046 DEBUG Processing 67/729 atomic regions from SNP 19834 to 20434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,084 DEBUG Processing 195/670 atomic regions from SNP 58339 to 58939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,268 DEBUG Processing 68/729 atomic regions from SNP 20134 to 20734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,314 DEBUG Processing 196/670 atomic regions from SNP 58639 to 59239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,516 DEBUG Processing 69/729 atomic regions from SNP 20434 to 21034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,547 DEBUG Processing 197/670 atomic regions from SNP 58939 to 59539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,768 DEBUG Processing 70/729 atomic regions from SNP 20734 to 21334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,786 DEBUG Processing 198/670 atomic regions from SNP 59239 to 59839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,007 DEBUG Processing 71/729 atomic regions from SNP 21034 to 21634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,031 DEBUG Processing 199/670 atomic regions from SNP 59539 to 60139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,245 DEBUG Processing 72/729 atomic regions from SNP 21334 to 21934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,285 DEBUG Processing 200/670 atomic regions from SNP 59839 to 60439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,478 DEBUG Processing 73/729 atomic regions from SNP 21634 to 22234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,527 DEBUG Processing 201/670 atomic regions from SNP 60139 to 60739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,702 DEBUG Processing 74/729 atomic regions from SNP 21934 to 22534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,755 DEBUG Processing 202/670 atomic regions from SNP 60439 to 61039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,921 DEBUG Processing 75/729 atomic regions from SNP 22234 to 22834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,978 DEBUG Processing 203/670 atomic regions from SNP 60739 to 61339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,140 DEBUG Processing 76/729 atomic regions from SNP 22534 to 23134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,197 DEBUG Processing 204/670 atomic regions from SNP 61039 to 61639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,361 DEBUG Processing 77/729 atomic regions from SNP 22834 to 23434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,427 DEBUG Processing 205/670 atomic regions from SNP 61339 to 61939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,584 DEBUG Processing 78/729 atomic regions from SNP 23134 to 23734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,656 DEBUG Processing 206/670 atomic regions from SNP 61639 to 62239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,808 DEBUG Processing 79/729 atomic regions from SNP 23434 to 24034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,883 DEBUG Processing 207/670 atomic regions from SNP 61939 to 62539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,025 DEBUG Processing 80/729 atomic regions from SNP 23734 to 24334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,117 DEBUG Processing 208/670 atomic regions from SNP 62239 to 62839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,242 DEBUG Processing 81/729 atomic regions from SNP 24034 to 24634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,333 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:53:13,359 DEBUG Processing 209/670 atomic regions from SNP 62539 to 63139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,459 DEBUG Processing 82/729 atomic regions from SNP 24334 to 24934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,601 DEBUG Processing 210/670 atomic regions from SNP 62839 to 63439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,679 DEBUG Processing 83/729 atomic regions from SNP 24634 to 25234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,789 DEBUG Subchromosome time: 219.53420380305033, subchromosome SNPs: 213107 2025-01-31 09:53:13,789 DEBUG Estimated BADs: [1.09, 6.56, 0.73, 4.37, 0.73, 10.93, 0.73, 6.56, 1.09, 8.74, 0.00, 1.09, 6.56, 1.09, 6.56, 0.55, 2.19, 1.09, 4.37, 15.30, 6.56, 0.73, 2.19, 1.09, 0.44, 2.19, 0.73, 8.74, 2.19, 1.09, 21.85, 2.19, 6.56, 2.19, 0.44, 2.19, 0.73, 4.37, 0.44, 2.19, 4.37, 1.09, 2.19, 8.74, 2.19, 8.74, 4.37] SNP counts: [820, 2354, 823, 2597, 3942, 337, 3388, 2264, 2530, 2023, 26, 1524, 2995, 1852, 7328, 1737, 8625, 6412, 3101, 1436, 3089, 2003, 2762, 3544, 5386, 1798, 11777, 236, 9599, 7843, 127, 10106, 3338, 7218, 5848, 3912, 4010, 492, 3608, 5048, 9635, 7813, 33134, 4366, 22892, 1408, 7105] SNP IDs counts: [820, 2354, 823, 2597, 3942, 337, 3388, 2264, 2530, 2023, 26, 1524, 2995, 1852, 7328, 1737, 8625, 6412, 3101, 1436, 3089, 2003, 2762, 3544, 5386, 1798, 11777, 236, 9599, 7843, 127, 10106, 3338, 7218, 5848, 3912, 4010, 492, 3608, 5048, 9635, 7813, 33134, 4366, 22892, 1408, 7105] Critical gap: 664483bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.58Mbp, 5.11Mbp, 5.70Mbp, 7.30Mbp, 12.88Mbp, 13.06Mbp, 15.92Mbp, 17.10Mbp, 18.99Mbp, 20.07Mbp[0.95Mbp], 21.37Mbp[1.40Mbp], 24.29Mbp, 25.93Mbp, 27.16Mbp, 31.15Mbp, 33.66Mbp, 38.27Mbp, 43.12Mbp, 44.81Mbp, 45.56Mbp, 47.17Mbp, 48.48Mbp, 49.97Mbp, 52.08Mbp, 55.31Mbp, 56.37Mbp, 63.88Mbp, 64.01Mbp, 69.21Mbp, 73.56Mbp, 73.62Mbp, 79.24Mbp, 80.99Mbp, 84.92Mbp, 88.41Mbp, 90.61Mbp, 92.84Mbp, 93.12Mbp, 95.28Mbp, 98.05Mbp, 103.17Mbp, 108.36Mbp, 126.20Mbp, 128.51Mbp, 140.81Mbp, 141.54Mbp, 145.44Mbp] 2025-01-31 09:53:13,789 DEBUG chr7 time: 219.5347548009595 s 2025-01-31 09:53:13,849 DEBUG Processing 211/670 atomic regions from SNP 63139 to 63739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,903 DEBUG Processing 84/729 atomic regions from SNP 24934 to 25534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,938 DEBUG chr7: Fitting background model for 46 segments 2025-01-31 09:53:14,072 DEBUG Processing 212/670 atomic regions from SNP 63439 to 64039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,129 DEBUG Processing 85/729 atomic regions from SNP 25234 to 25834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,302 DEBUG Processing 213/670 atomic regions from SNP 63739 to 64339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,357 DEBUG Processing 86/729 atomic regions from SNP 25534 to 26134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,537 DEBUG Processing 214/670 atomic regions from SNP 64039 to 64639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,591 DEBUG Processing 87/729 atomic regions from SNP 25834 to 26434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,766 DEBUG Processing 215/670 atomic regions from SNP 64339 to 64939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,818 DEBUG Processing 88/729 atomic regions from SNP 26134 to 26734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,996 DEBUG Processing 216/670 atomic regions from SNP 64639 to 65239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,046 DEBUG Processing 89/729 atomic regions from SNP 26434 to 27034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,228 DEBUG Processing 217/670 atomic regions from SNP 64939 to 65539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,272 DEBUG Processing 90/729 atomic regions from SNP 26734 to 27334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,480 DEBUG Processing 218/670 atomic regions from SNP 65239 to 65839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,499 DEBUG Processing 91/729 atomic regions from SNP 27034 to 27634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,709 DEBUG Processing 219/670 atomic regions from SNP 65539 to 66139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,725 DEBUG Processing 92/729 atomic regions from SNP 27334 to 27934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,953 DEBUG Processing 93/729 atomic regions from SNP 27634 to 28234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,960 DEBUG Processing 220/670 atomic regions from SNP 65839 to 66439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,180 DEBUG Processing 94/729 atomic regions from SNP 27934 to 28534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,209 DEBUG Processing 221/670 atomic regions from SNP 66139 to 66739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,410 DEBUG Processing 95/729 atomic regions from SNP 28234 to 28834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,473 DEBUG Processing 222/670 atomic regions from SNP 66439 to 67039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,630 DEBUG Processing 96/729 atomic regions from SNP 28534 to 29134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,719 DEBUG Processing 223/670 atomic regions from SNP 66739 to 67339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,856 DEBUG Processing 97/729 atomic regions from SNP 28834 to 29434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,947 DEBUG Processing 224/670 atomic regions from SNP 67039 to 67639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,084 DEBUG Processing 98/729 atomic regions from SNP 29134 to 29734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,174 DEBUG Processing 225/670 atomic regions from SNP 67339 to 67939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,322 DEBUG Processing 99/729 atomic regions from SNP 29434 to 30034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,403 DEBUG Processing 226/670 atomic regions from SNP 67639 to 68239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,567 DEBUG Processing 100/729 atomic regions from SNP 29734 to 30334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,631 DEBUG Processing 227/670 atomic regions from SNP 67939 to 68539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,820 DEBUG Processing 101/729 atomic regions from SNP 30034 to 30634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,875 DEBUG Processing 228/670 atomic regions from SNP 68239 to 68839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,087 DEBUG Processing 102/729 atomic regions from SNP 30334 to 30934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,119 DEBUG Processing 229/670 atomic regions from SNP 68539 to 69139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,366 DEBUG Processing 230/670 atomic regions from SNP 68839 to 69439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,371 DEBUG Processing 103/729 atomic regions from SNP 30634 to 31234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,620 DEBUG Processing 231/670 atomic regions from SNP 69139 to 69739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,655 DEBUG Processing 104/729 atomic regions from SNP 30934 to 31534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,860 DEBUG Processing 232/670 atomic regions from SNP 69439 to 70039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,947 DEBUG Processing 105/729 atomic regions from SNP 31234 to 31834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,122 DEBUG Processing 233/670 atomic regions from SNP 69739 to 70339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,222 DEBUG Processing 106/729 atomic regions from SNP 31534 to 32134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,356 DEBUG Processing 234/670 atomic regions from SNP 70039 to 70639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,487 DEBUG Processing 107/729 atomic regions from SNP 31834 to 32434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,594 DEBUG Processing 235/670 atomic regions from SNP 70339 to 70939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,756 DEBUG Processing 108/729 atomic regions from SNP 32134 to 32734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,833 DEBUG Processing 236/670 atomic regions from SNP 70639 to 71239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,023 DEBUG Processing 109/729 atomic regions from SNP 32434 to 33034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,069 DEBUG Processing 237/670 atomic regions from SNP 70939 to 71539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,287 DEBUG Processing 110/729 atomic regions from SNP 32734 to 33334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,309 DEBUG Processing 238/670 atomic regions from SNP 71239 to 71839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,545 DEBUG Processing 111/729 atomic regions from SNP 33034 to 33634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,547 DEBUG Processing 239/670 atomic regions from SNP 71539 to 72139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,789 DEBUG Processing 240/670 atomic regions from SNP 71839 to 72439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,804 DEBUG Processing 112/729 atomic regions from SNP 33334 to 33934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,039 DEBUG Processing 241/670 atomic regions from SNP 72139 to 72739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,046 DEBUG Processing 113/729 atomic regions from SNP 33634 to 34234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,275 DEBUG Processing 114/729 atomic regions from SNP 33934 to 34534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,308 DEBUG Processing 242/670 atomic regions from SNP 72439 to 73039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,505 DEBUG Processing 115/729 atomic regions from SNP 34234 to 34834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,570 DEBUG Processing 243/670 atomic regions from SNP 72739 to 73339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,739 DEBUG Processing 116/729 atomic regions from SNP 34534 to 35134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,819 DEBUG Processing 244/670 atomic regions from SNP 73039 to 73639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,966 DEBUG Processing 117/729 atomic regions from SNP 34834 to 35434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,044 DEBUG Processing 245/670 atomic regions from SNP 73339 to 73939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,192 DEBUG Processing 118/729 atomic regions from SNP 35134 to 35734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,275 DEBUG Processing 246/670 atomic regions from SNP 73639 to 74239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,411 DEBUG Processing 119/729 atomic regions from SNP 35434 to 36034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,493 DEBUG Subchromosome time: 227.7849555700086, subchromosome SNPs: 221810 2025-01-31 09:53:22,494 DEBUG Estimated BADs: [4.85, 0.81, 4.85, 2.42, 0.61, 2.42, 0.81, 2.42, 0.81, 4.85, 0.81, 21.82, 1.21, 9.70, 2.42, 9.70, 2.42, 4.85, 0.61, 1.21, 7.27, 2.42, 7.27, 2.42, 4.85, 12.12, 4.85] SNP counts: [2783, 8475, 9711, 20614, 3923, 12014, 11675, 9911, 13427, 959, 4875, 100, 14885, 5057, 19320, 2933, 16747, 4798, 10516, 3309, 5227, 6562, 1924, 8761, 4800, 9302, 9202] SNP IDs counts: [2783, 8475, 9711, 20614, 3923, 12014, 11675, 9911, 13427, 959, 4875, 100, 14885, 5057, 19320, 2933, 16747, 4798, 10516, 3309, 5227, 6562, 1924, 8761, 4800, 9302, 9202] Critical gap: 615959bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.72Mbp, 9.72Mbp, 14.87Mbp, 28.04Mbp, 30.38Mbp, 36.96Mbp, 43.92Mbp, 49.31Mbp, 57.49Mbp, 58.01Mbp, 60.94Mbp, 60.99Mbp, 69.62Mbp, 72.52Mbp, 83.57Mbp, 85.09Mbp, 94.08Mbp, 96.67Mbp, 102.74Mbp, 104.53Mbp, 107.38Mbp, 110.84Mbp, 111.85Mbp, 116.87Mbp, 119.39Mbp, 124.34Mbp, 129.40Mbp] 2025-01-31 09:53:22,494 DEBUG chr8 time: 227.78552015905734 s 2025-01-31 09:53:22,506 DEBUG Processing 247/670 atomic regions from SNP 73939 to 74539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,629 DEBUG Processing 120/729 atomic regions from SNP 35734 to 36334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,645 DEBUG chr8: Fitting background model for 27 segments 2025-01-31 09:53:22,768 DEBUG Processing 248/670 atomic regions from SNP 74239 to 74839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,848 DEBUG Processing 121/729 atomic regions from SNP 36034 to 36634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,040 DEBUG Processing 249/670 atomic regions from SNP 74539 to 75139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,077 DEBUG Processing 122/729 atomic regions from SNP 36334 to 36934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,308 DEBUG Processing 123/729 atomic regions from SNP 36634 to 37234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,309 DEBUG Processing 250/670 atomic regions from SNP 74839 to 75439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,537 DEBUG Processing 124/729 atomic regions from SNP 36934 to 37534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,552 DEBUG Processing 251/670 atomic regions from SNP 75139 to 75739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,774 DEBUG Processing 125/729 atomic regions from SNP 37234 to 37834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,783 DEBUG Processing 252/670 atomic regions from SNP 75439 to 76039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,004 DEBUG Processing 126/729 atomic regions from SNP 37534 to 38134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,016 DEBUG Processing 253/670 atomic regions from SNP 75739 to 76339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,230 DEBUG Processing 127/729 atomic regions from SNP 37834 to 38434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,244 DEBUG Processing 254/670 atomic regions from SNP 76039 to 76639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,472 DEBUG Processing 255/670 atomic regions from SNP 76339 to 76939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,479 DEBUG Processing 128/729 atomic regions from SNP 38134 to 38734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,713 DEBUG Processing 256/670 atomic regions from SNP 76639 to 77239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,721 DEBUG Processing 129/729 atomic regions from SNP 38434 to 39034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,955 DEBUG Processing 130/729 atomic regions from SNP 38734 to 39334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,967 DEBUG Processing 257/670 atomic regions from SNP 76939 to 77539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,184 DEBUG Processing 131/729 atomic regions from SNP 39034 to 39634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,223 DEBUG Processing 258/670 atomic regions from SNP 77239 to 77839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,416 DEBUG Processing 132/729 atomic regions from SNP 39334 to 39934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,495 DEBUG Processing 259/670 atomic regions from SNP 77539 to 78139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,649 DEBUG Processing 133/729 atomic regions from SNP 39634 to 40234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,772 DEBUG Processing 260/670 atomic regions from SNP 77839 to 78439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,879 DEBUG Processing 134/729 atomic regions from SNP 39934 to 40534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,041 DEBUG Processing 261/670 atomic regions from SNP 78139 to 78739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,117 DEBUG Processing 135/729 atomic regions from SNP 40234 to 40834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,314 DEBUG Processing 262/670 atomic regions from SNP 78439 to 79039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,361 DEBUG Processing 136/729 atomic regions from SNP 40534 to 41134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,575 DEBUG Processing 263/670 atomic regions from SNP 78739 to 79339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,597 DEBUG Processing 137/729 atomic regions from SNP 40834 to 41434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,811 DEBUG Processing 264/670 atomic regions from SNP 79039 to 79639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,828 DEBUG Processing 138/729 atomic regions from SNP 41134 to 41734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,061 DEBUG Processing 139/729 atomic regions from SNP 41434 to 42034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,072 DEBUG Processing 265/670 atomic regions from SNP 79339 to 79939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,300 DEBUG Processing 140/729 atomic regions from SNP 41734 to 42334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,350 DEBUG Processing 266/670 atomic regions from SNP 79639 to 80239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,533 DEBUG Processing 141/729 atomic regions from SNP 42034 to 42634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,623 DEBUG Processing 267/670 atomic regions from SNP 79939 to 80539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,766 DEBUG Processing 142/729 atomic regions from SNP 42334 to 42934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,877 DEBUG Processing 268/670 atomic regions from SNP 80239 to 80839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,002 DEBUG Processing 143/729 atomic regions from SNP 42634 to 43234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,117 DEBUG Processing 269/670 atomic regions from SNP 80539 to 81139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,246 DEBUG Processing 144/729 atomic regions from SNP 42934 to 43534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,359 DEBUG Processing 270/670 atomic regions from SNP 80839 to 81439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,476 DEBUG Processing 145/729 atomic regions from SNP 43234 to 43834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,600 DEBUG Processing 271/670 atomic regions from SNP 81139 to 81739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,701 DEBUG Processing 146/729 atomic regions from SNP 43534 to 44134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,853 DEBUG Processing 272/670 atomic regions from SNP 81439 to 82039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,920 DEBUG Processing 147/729 atomic regions from SNP 43834 to 44434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,113 DEBUG Processing 273/670 atomic regions from SNP 81739 to 82339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,143 DEBUG Processing 148/729 atomic regions from SNP 44134 to 44734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,358 DEBUG Processing 274/670 atomic regions from SNP 82039 to 82639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,369 DEBUG Processing 149/729 atomic regions from SNP 44434 to 45034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,590 DEBUG Processing 275/670 atomic regions from SNP 82339 to 82939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,597 DEBUG Processing 150/729 atomic regions from SNP 44734 to 45334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,817 DEBUG Processing 276/670 atomic regions from SNP 82639 to 83239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,823 DEBUG Processing 151/729 atomic regions from SNP 45034 to 45634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,050 DEBUG Processing 152/729 atomic regions from SNP 45334 to 45934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,057 DEBUG Processing 277/670 atomic regions from SNP 82939 to 83539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,284 DEBUG Processing 153/729 atomic regions from SNP 45634 to 46234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,307 DEBUG Processing 278/670 atomic regions from SNP 83239 to 83839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,520 DEBUG Processing 154/729 atomic regions from SNP 45934 to 46534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,561 DEBUG Processing 279/670 atomic regions from SNP 83539 to 84139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,747 DEBUG Processing 155/729 atomic regions from SNP 46234 to 46834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,815 DEBUG Processing 280/670 atomic regions from SNP 83839 to 84439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,980 DEBUG Processing 156/729 atomic regions from SNP 46534 to 47134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,073 DEBUG Processing 281/670 atomic regions from SNP 84139 to 84739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,215 DEBUG Processing 157/729 atomic regions from SNP 46834 to 47434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,310 DEBUG Processing 282/670 atomic regions from SNP 84439 to 85039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,444 DEBUG Processing 158/729 atomic regions from SNP 47134 to 47734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,539 DEBUG Processing 283/670 atomic regions from SNP 84739 to 85339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,668 DEBUG Processing 159/729 atomic regions from SNP 47434 to 48034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,770 DEBUG Processing 284/670 atomic regions from SNP 85039 to 85639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,896 DEBUG Processing 160/729 atomic regions from SNP 47734 to 48334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,007 DEBUG Processing 285/670 atomic regions from SNP 85339 to 85939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,125 DEBUG Processing 161/729 atomic regions from SNP 48034 to 48634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,243 DEBUG Processing 286/670 atomic regions from SNP 85639 to 86239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,357 DEBUG Processing 162/729 atomic regions from SNP 48334 to 48934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,479 DEBUG Processing 287/670 atomic regions from SNP 85939 to 86539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,589 DEBUG Processing 163/729 atomic regions from SNP 48634 to 49234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,717 DEBUG Processing 288/670 atomic regions from SNP 86239 to 86839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,838 DEBUG Processing 164/729 atomic regions from SNP 48934 to 49534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,955 DEBUG Processing 289/670 atomic regions from SNP 86539 to 87139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,088 DEBUG Processing 165/729 atomic regions from SNP 49234 to 49834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,188 DEBUG Processing 290/670 atomic regions from SNP 86839 to 87439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,328 DEBUG Processing 166/729 atomic regions from SNP 49534 to 50134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,421 DEBUG Processing 291/670 atomic regions from SNP 87139 to 87739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,557 DEBUG Processing 167/729 atomic regions from SNP 49834 to 50434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,660 DEBUG Processing 292/670 atomic regions from SNP 87439 to 88039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,787 DEBUG Processing 168/729 atomic regions from SNP 50134 to 50734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,895 DEBUG Processing 293/670 atomic regions from SNP 87739 to 88339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,018 DEBUG Processing 169/729 atomic regions from SNP 50434 to 51034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,137 DEBUG Processing 294/670 atomic regions from SNP 88039 to 88639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,244 DEBUG Processing 170/729 atomic regions from SNP 50734 to 51334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,381 DEBUG Processing 295/670 atomic regions from SNP 88339 to 88939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,479 DEBUG Processing 171/729 atomic regions from SNP 51034 to 51634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,622 DEBUG Processing 296/670 atomic regions from SNP 88639 to 89239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,731 DEBUG Processing 172/729 atomic regions from SNP 51334 to 51934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,867 DEBUG Processing 297/670 atomic regions from SNP 88939 to 89539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,976 DEBUG Processing 173/729 atomic regions from SNP 51634 to 52234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,108 DEBUG Processing 298/670 atomic regions from SNP 89239 to 89839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,212 DEBUG Processing 174/729 atomic regions from SNP 51934 to 52534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,347 DEBUG Processing 299/670 atomic regions from SNP 89539 to 90139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,462 DEBUG Processing 175/729 atomic regions from SNP 52234 to 52834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,612 DEBUG Processing 300/670 atomic regions from SNP 89839 to 90439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,701 DEBUG Processing 176/729 atomic regions from SNP 52534 to 53134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,859 DEBUG Processing 301/670 atomic regions from SNP 90139 to 90739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,920 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:53:35,922 DEBUG chr11: Signal quantile: 0.986. signal threshold: 16. Best RMSEA: 0.015 2025-01-31 09:53:35,932 DEBUG Processing 177/729 atomic regions from SNP 52834 to 53434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,116 DEBUG Processing 302/670 atomic regions from SNP 90439 to 91039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,164 DEBUG Processing 178/729 atomic regions from SNP 53134 to 53734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,389 DEBUG Processing 303/670 atomic regions from SNP 90739 to 91339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,401 DEBUG Processing 179/729 atomic regions from SNP 53434 to 54034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,646 DEBUG Processing 180/729 atomic regions from SNP 53734 to 54334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,649 DEBUG Processing 304/670 atomic regions from SNP 91039 to 91639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,883 DEBUG Processing 181/729 atomic regions from SNP 54034 to 54634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,890 DEBUG Processing 305/670 atomic regions from SNP 91339 to 91939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,120 DEBUG Processing 182/729 atomic regions from SNP 54334 to 54934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,128 DEBUG Processing 306/670 atomic regions from SNP 91639 to 92239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,356 DEBUG Processing 183/729 atomic regions from SNP 54634 to 55234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,371 DEBUG Processing 307/670 atomic regions from SNP 91939 to 92539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,597 DEBUG Processing 184/729 atomic regions from SNP 54934 to 55534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,615 DEBUG Processing 308/670 atomic regions from SNP 92239 to 92839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,828 DEBUG Processing 185/729 atomic regions from SNP 55234 to 55834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,880 DEBUG Processing 309/670 atomic regions from SNP 92539 to 93139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,065 DEBUG Processing 186/729 atomic regions from SNP 55534 to 56134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,143 DEBUG Processing 310/670 atomic regions from SNP 92839 to 93439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,290 DEBUG chr11 total SNP count: 216751 2025-01-31 09:53:38,291 DEBUG chr11 length: 122082543 2025-01-31 09:53:38,291 DEBUG ----------------------------------------- 2025-01-31 09:53:38,291 INFO Processing SNPs in chr11 2025-01-31 09:53:38,301 DEBUG Processing 187/729 atomic regions from SNP 55834 to 56434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,404 DEBUG Processing 311/670 atomic regions from SNP 93139 to 93739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,512 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 216751)] 2025-01-31 09:53:38,541 DEBUG Processing 188/729 atomic regions from SNP 56134 to 56734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,663 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:38,670 DEBUG Processing 312/670 atomic regions from SNP 93439 to 94039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,792 DEBUG Processing 189/729 atomic regions from SNP 56434 to 57034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,922 DEBUG Processing 313/670 atomic regions from SNP 93739 to 94339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,026 DEBUG Processing 190/729 atomic regions from SNP 56734 to 57334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,171 DEBUG Processing 314/670 atomic regions from SNP 94039 to 94639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,262 DEBUG Processing 191/729 atomic regions from SNP 57034 to 57634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,416 DEBUG Processing 315/670 atomic regions from SNP 94339 to 94939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,500 DEBUG Processing 192/729 atomic regions from SNP 57334 to 57934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,654 DEBUG Processing 316/670 atomic regions from SNP 94639 to 95239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,737 DEBUG Processing 193/729 atomic regions from SNP 57634 to 58234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,906 DEBUG Processing 317/670 atomic regions from SNP 94939 to 95539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,975 DEBUG Processing 194/729 atomic regions from SNP 57934 to 58534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,153 DEBUG Processing 318/670 atomic regions from SNP 95239 to 95839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,210 DEBUG Processing 195/729 atomic regions from SNP 58234 to 58834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,393 DEBUG Processing 319/670 atomic regions from SNP 95539 to 96139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,443 DEBUG Processing 196/729 atomic regions from SNP 58534 to 59134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,647 DEBUG Processing 320/670 atomic regions from SNP 95839 to 96439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,693 DEBUG Processing 197/729 atomic regions from SNP 58834 to 59434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,907 DEBUG Processing 321/670 atomic regions from SNP 96139 to 96739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,928 DEBUG Processing 198/729 atomic regions from SNP 59134 to 59734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,149 DEBUG Processing 322/670 atomic regions from SNP 96439 to 97039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,167 DEBUG Processing 199/729 atomic regions from SNP 59434 to 60034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,403 DEBUG Processing 323/670 atomic regions from SNP 96739 to 97339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,409 DEBUG Processing 200/729 atomic regions from SNP 59734 to 60334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,646 DEBUG Processing 201/729 atomic regions from SNP 60034 to 60634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,663 DEBUG Processing 324/670 atomic regions from SNP 97039 to 97639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,880 DEBUG Processing 202/729 atomic regions from SNP 60334 to 60934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,929 DEBUG Processing 325/670 atomic regions from SNP 97339 to 97939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,116 DEBUG Processing 203/729 atomic regions from SNP 60634 to 61234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,199 DEBUG Processing 326/670 atomic regions from SNP 97639 to 98239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,352 DEBUG Processing 204/729 atomic regions from SNP 60934 to 61534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,449 DEBUG Processing 327/670 atomic regions from SNP 97939 to 98539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,586 DEBUG Processing 205/729 atomic regions from SNP 61234 to 61834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,695 DEBUG Processing 328/670 atomic regions from SNP 98239 to 98839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,819 DEBUG Processing 206/729 atomic regions from SNP 61534 to 62134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,945 DEBUG Processing 329/670 atomic regions from SNP 98539 to 99139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,058 DEBUG Processing 207/729 atomic regions from SNP 61834 to 62434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,192 DEBUG Processing 330/670 atomic regions from SNP 98839 to 99439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,293 DEBUG Processing 208/729 atomic regions from SNP 62134 to 62734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,415 DEBUG Processing 331/670 atomic regions from SNP 99139 to 99739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,525 DEBUG Processing 209/729 atomic regions from SNP 62434 to 63034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,644 DEBUG Processing 332/670 atomic regions from SNP 99439 to 100039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,754 DEBUG Processing 210/729 atomic regions from SNP 62734 to 63334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,873 DEBUG Processing 333/670 atomic regions from SNP 99739 to 100339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,981 DEBUG Processing 211/729 atomic regions from SNP 63034 to 63634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,101 DEBUG Processing 334/670 atomic regions from SNP 100039 to 100639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,213 DEBUG Processing 212/729 atomic regions from SNP 63334 to 63934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,340 DEBUG Processing 335/670 atomic regions from SNP 100339 to 100939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,451 DEBUG Processing 213/729 atomic regions from SNP 63634 to 64234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,594 DEBUG Processing 336/670 atomic regions from SNP 100639 to 101239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,685 DEBUG Processing 214/729 atomic regions from SNP 63934 to 64534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,847 DEBUG Processing 337/670 atomic regions from SNP 100939 to 101539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,923 DEBUG Processing 215/729 atomic regions from SNP 64234 to 64834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,078 DEBUG Processing 338/670 atomic regions from SNP 101239 to 101839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,162 DEBUG Processing 216/729 atomic regions from SNP 64534 to 65134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,311 DEBUG Processing 339/670 atomic regions from SNP 101539 to 102139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,400 DEBUG Processing 217/729 atomic regions from SNP 64834 to 65434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,541 DEBUG Processing 340/670 atomic regions from SNP 101839 to 102439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,632 DEBUG Processing 218/729 atomic regions from SNP 65134 to 65734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,767 DEBUG Processing 341/670 atomic regions from SNP 102139 to 102739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,864 DEBUG Processing 219/729 atomic regions from SNP 65434 to 66034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,995 DEBUG Processing 342/670 atomic regions from SNP 102439 to 103039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,105 DEBUG Processing 220/729 atomic regions from SNP 65734 to 66334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,220 DEBUG Processing 343/670 atomic regions from SNP 102739 to 103339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,365 DEBUG Processing 221/729 atomic regions from SNP 66034 to 66634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,450 DEBUG Processing 344/670 atomic regions from SNP 103039 to 103639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,630 DEBUG Processing 222/729 atomic regions from SNP 66334 to 66934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,686 DEBUG Processing 345/670 atomic regions from SNP 103339 to 103939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,873 DEBUG Processing 223/729 atomic regions from SNP 66634 to 67234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,923 DEBUG Processing 346/670 atomic regions from SNP 103639 to 104239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,109 DEBUG Processing 224/729 atomic regions from SNP 66934 to 67534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,157 DEBUG Processing 347/670 atomic regions from SNP 103939 to 104539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,197 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:53:47,342 DEBUG Processing 225/729 atomic regions from SNP 67234 to 67834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,393 DEBUG Processing 348/670 atomic regions from SNP 104239 to 104839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,575 DEBUG Processing 226/729 atomic regions from SNP 67534 to 68134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,631 DEBUG Processing 349/670 atomic regions from SNP 104539 to 105139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,810 DEBUG Processing 227/729 atomic regions from SNP 67834 to 68434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,874 DEBUG Processing 350/670 atomic regions from SNP 104839 to 105439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,045 DEBUG Processing 228/729 atomic regions from SNP 68134 to 68734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,128 DEBUG Processing 351/670 atomic regions from SNP 105139 to 105739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,283 DEBUG Processing 229/729 atomic regions from SNP 68434 to 69034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,366 DEBUG Processing 352/670 atomic regions from SNP 105439 to 106039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,525 DEBUG Processing 230/729 atomic regions from SNP 68734 to 69334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,617 DEBUG Processing 353/670 atomic regions from SNP 105739 to 106339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,756 DEBUG Processing 231/729 atomic regions from SNP 69034 to 69634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,865 DEBUG Processing 354/670 atomic regions from SNP 106039 to 106639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,990 DEBUG Processing 232/729 atomic regions from SNP 69334 to 69934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,110 DEBUG Processing 355/670 atomic regions from SNP 106339 to 106939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,221 DEBUG Processing 233/729 atomic regions from SNP 69634 to 70234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,371 DEBUG Processing 356/670 atomic regions from SNP 106639 to 107239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,460 DEBUG Processing 234/729 atomic regions from SNP 69934 to 70534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,631 DEBUG Processing 357/670 atomic regions from SNP 106939 to 107539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,699 DEBUG Processing 235/729 atomic regions from SNP 70234 to 70834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,872 DEBUG Processing 358/670 atomic regions from SNP 107239 to 107839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,956 DEBUG Processing 236/729 atomic regions from SNP 70534 to 71134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,106 DEBUG Processing 359/670 atomic regions from SNP 107539 to 108139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,222 DEBUG Processing 237/729 atomic regions from SNP 70834 to 71434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,334 DEBUG Processing 360/670 atomic regions from SNP 107839 to 108439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,485 DEBUG Processing 238/729 atomic regions from SNP 71134 to 71734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,566 DEBUG Processing 361/670 atomic regions from SNP 108139 to 108739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,726 DEBUG Processing 239/729 atomic regions from SNP 71434 to 72034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,804 DEBUG Processing 362/670 atomic regions from SNP 108439 to 109039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,972 DEBUG Processing 240/729 atomic regions from SNP 71734 to 72334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,038 DEBUG Processing 363/670 atomic regions from SNP 108739 to 109339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,214 DEBUG Processing 241/729 atomic regions from SNP 72034 to 72634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,280 DEBUG Processing 364/670 atomic regions from SNP 109039 to 109639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,469 DEBUG Processing 242/729 atomic regions from SNP 72334 to 72934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,520 DEBUG Processing 365/670 atomic regions from SNP 109339 to 109939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,736 DEBUG Processing 243/729 atomic regions from SNP 72634 to 73234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,761 DEBUG Processing 366/670 atomic regions from SNP 109639 to 110239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,007 DEBUG Processing 367/670 atomic regions from SNP 109939 to 110539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,012 DEBUG Processing 244/729 atomic regions from SNP 72934 to 73534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,249 DEBUG Processing 368/670 atomic regions from SNP 110239 to 110839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,288 DEBUG Processing 245/729 atomic regions from SNP 73234 to 73834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,491 DEBUG Processing 369/670 atomic regions from SNP 110539 to 111139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,547 DEBUG Processing 246/729 atomic regions from SNP 73534 to 74134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,733 DEBUG Processing 370/670 atomic regions from SNP 110839 to 111439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,807 DEBUG Processing 247/729 atomic regions from SNP 73834 to 74434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,978 DEBUG Processing 371/670 atomic regions from SNP 111139 to 111739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,072 DEBUG Processing 248/729 atomic regions from SNP 74134 to 74734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,227 DEBUG Processing 372/670 atomic regions from SNP 111439 to 112039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,324 DEBUG Processing 249/729 atomic regions from SNP 74434 to 75034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,484 DEBUG Processing 373/670 atomic regions from SNP 111739 to 112339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,575 DEBUG Processing 250/729 atomic regions from SNP 74734 to 75334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,724 DEBUG Processing 374/670 atomic regions from SNP 112039 to 112639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,833 DEBUG Processing 251/729 atomic regions from SNP 75034 to 75634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,963 DEBUG Processing 375/670 atomic regions from SNP 112339 to 112939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,078 DEBUG Processing 252/729 atomic regions from SNP 75334 to 75934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,189 DEBUG Processing 376/670 atomic regions from SNP 112639 to 113239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,334 DEBUG Processing 253/729 atomic regions from SNP 75634 to 76234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,423 DEBUG Processing 377/670 atomic regions from SNP 112939 to 113539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,596 DEBUG Processing 254/729 atomic regions from SNP 75934 to 76534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,659 DEBUG Processing 378/670 atomic regions from SNP 113239 to 113839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,856 DEBUG Processing 255/729 atomic regions from SNP 76234 to 76834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,905 DEBUG Processing 379/670 atomic regions from SNP 113539 to 114139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,120 DEBUG Processing 256/729 atomic regions from SNP 76534 to 77134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,166 DEBUG Processing 380/670 atomic regions from SNP 113839 to 114439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,364 DEBUG Processing 257/729 atomic regions from SNP 76834 to 77434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,409 DEBUG Processing 381/670 atomic regions from SNP 114139 to 114739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,609 DEBUG Processing 258/729 atomic regions from SNP 77134 to 77734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,656 DEBUG Processing 382/670 atomic regions from SNP 114439 to 115039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,856 DEBUG Processing 259/729 atomic regions from SNP 77434 to 78034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,909 DEBUG Processing 383/670 atomic regions from SNP 114739 to 115339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,093 DEBUG Processing 260/729 atomic regions from SNP 77734 to 78334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,153 DEBUG Processing 384/670 atomic regions from SNP 115039 to 115639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,328 DEBUG Processing 261/729 atomic regions from SNP 78034 to 78634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,389 DEBUG Processing 385/670 atomic regions from SNP 115339 to 115939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,564 DEBUG Processing 262/729 atomic regions from SNP 78334 to 78934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,626 DEBUG Processing 386/670 atomic regions from SNP 115639 to 116239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,801 DEBUG Processing 263/729 atomic regions from SNP 78634 to 79234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,871 DEBUG Processing 387/670 atomic regions from SNP 115939 to 116539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,040 DEBUG Processing 264/729 atomic regions from SNP 78934 to 79534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,127 DEBUG Processing 388/670 atomic regions from SNP 116239 to 116839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,272 DEBUG Processing 265/729 atomic regions from SNP 79234 to 79834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,368 DEBUG Processing 389/670 atomic regions from SNP 116539 to 117139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,506 DEBUG Processing 266/729 atomic regions from SNP 79534 to 80134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,624 DEBUG Processing 390/670 atomic regions from SNP 116839 to 117439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,736 DEBUG Processing 267/729 atomic regions from SNP 79834 to 80434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,865 DEBUG Processing 391/670 atomic regions from SNP 117139 to 117739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,969 DEBUG Processing 268/729 atomic regions from SNP 80134 to 80734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,115 DEBUG Processing 392/670 atomic regions from SNP 117439 to 118039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,203 DEBUG Processing 269/729 atomic regions from SNP 80434 to 81034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,355 DEBUG Processing 393/670 atomic regions from SNP 117739 to 118339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,451 DEBUG Processing 270/729 atomic regions from SNP 80734 to 81334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,592 DEBUG Processing 394/670 atomic regions from SNP 118039 to 118639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,703 DEBUG Processing 271/729 atomic regions from SNP 81034 to 81634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,842 DEBUG Processing 395/670 atomic regions from SNP 118339 to 118939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,938 DEBUG Processing 272/729 atomic regions from SNP 81334 to 81934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,063 DEBUG Processing 396/670 atomic regions from SNP 118639 to 119239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,169 DEBUG Processing 273/729 atomic regions from SNP 81634 to 82234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,293 DEBUG Processing 397/670 atomic regions from SNP 118939 to 119539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,405 DEBUG Processing 274/729 atomic regions from SNP 81934 to 82534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,534 DEBUG Processing 398/670 atomic regions from SNP 119239 to 119839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,638 DEBUG Processing 275/729 atomic regions from SNP 82234 to 82834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,767 DEBUG Processing 399/670 atomic regions from SNP 119539 to 120139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,876 DEBUG Processing 276/729 atomic regions from SNP 82534 to 83134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,006 DEBUG Processing 400/670 atomic regions from SNP 119839 to 120439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,117 DEBUG Processing 277/729 atomic regions from SNP 82834 to 83434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,239 DEBUG Processing 401/670 atomic regions from SNP 120139 to 120739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,352 DEBUG Processing 278/729 atomic regions from SNP 83134 to 83734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,471 DEBUG Processing 402/670 atomic regions from SNP 120439 to 121039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,586 DEBUG Processing 279/729 atomic regions from SNP 83434 to 84034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,703 DEBUG Processing 403/670 atomic regions from SNP 120739 to 121339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,824 DEBUG Processing 280/729 atomic regions from SNP 83734 to 84334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,936 DEBUG Processing 404/670 atomic regions from SNP 121039 to 121639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,063 DEBUG Processing 281/729 atomic regions from SNP 84034 to 84634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,173 DEBUG Processing 405/670 atomic regions from SNP 121339 to 121939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,301 DEBUG Processing 282/729 atomic regions from SNP 84334 to 84934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,415 DEBUG Processing 406/670 atomic regions from SNP 121639 to 122239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,541 DEBUG Processing 283/729 atomic regions from SNP 84634 to 85234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,660 DEBUG Processing 407/670 atomic regions from SNP 121939 to 122539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,790 DEBUG Processing 284/729 atomic regions from SNP 84934 to 85534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,909 DEBUG Processing 408/670 atomic regions from SNP 122239 to 122839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,053 DEBUG Processing 285/729 atomic regions from SNP 85234 to 85834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,159 DEBUG Processing 409/670 atomic regions from SNP 122539 to 123139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,308 DEBUG Processing 286/729 atomic regions from SNP 85534 to 86134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,438 DEBUG Processing 410/670 atomic regions from SNP 122839 to 123439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,555 DEBUG Processing 287/729 atomic regions from SNP 85834 to 86434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,709 DEBUG Processing 411/670 atomic regions from SNP 123139 to 123739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,793 DEBUG Processing 288/729 atomic regions from SNP 86134 to 86734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,949 DEBUG Processing 412/670 atomic regions from SNP 123439 to 124039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,029 DEBUG Processing 289/729 atomic regions from SNP 86434 to 87034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,187 DEBUG Processing 413/670 atomic regions from SNP 123739 to 124339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,261 DEBUG Processing 290/729 atomic regions from SNP 86734 to 87334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,420 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:54:03,422 DEBUG chr13: Signal quantile: 0.992. signal threshold: 18. Best RMSEA: 0.017 2025-01-31 09:54:03,423 DEBUG Processing 414/670 atomic regions from SNP 124039 to 124639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,497 DEBUG Processing 291/729 atomic regions from SNP 87034 to 87634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,680 DEBUG Processing 415/670 atomic regions from SNP 124339 to 124939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,736 DEBUG Processing 292/729 atomic regions from SNP 87334 to 87934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,917 DEBUG Processing 416/670 atomic regions from SNP 124639 to 125239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,973 DEBUG Processing 293/729 atomic regions from SNP 87634 to 88234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,154 DEBUG Processing 417/670 atomic regions from SNP 124939 to 125539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,210 DEBUG Processing 294/729 atomic regions from SNP 87934 to 88534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,385 DEBUG Processing 418/670 atomic regions from SNP 125239 to 125839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,442 DEBUG Processing 295/729 atomic regions from SNP 88234 to 88834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,622 DEBUG Processing 419/670 atomic regions from SNP 125539 to 126139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,678 DEBUG Processing 296/729 atomic regions from SNP 88534 to 89134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,862 DEBUG Processing 420/670 atomic regions from SNP 125839 to 126439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,917 DEBUG Processing 297/729 atomic regions from SNP 88834 to 89434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,100 DEBUG Processing 421/670 atomic regions from SNP 126139 to 126739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,152 DEBUG Processing 298/729 atomic regions from SNP 89134 to 89734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,336 DEBUG Processing 422/670 atomic regions from SNP 126439 to 127039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,384 DEBUG Processing 299/729 atomic regions from SNP 89434 to 90034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,578 DEBUG Processing 423/670 atomic regions from SNP 126739 to 127339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,616 DEBUG Processing 300/729 atomic regions from SNP 89734 to 90334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,708 DEBUG chr13 total SNP count: 204483 2025-01-31 09:54:05,708 DEBUG chr13 length: 120421639 2025-01-31 09:54:05,709 DEBUG ----------------------------------------- 2025-01-31 09:54:05,709 INFO Processing SNPs in chr13 2025-01-31 09:54:05,757 DEBUG Segmenting atomic regions: 2025-01-31 09:54:05,816 DEBUG Processing 424/670 atomic regions from SNP 127039 to 127639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,849 DEBUG Processing 301/729 atomic regions from SNP 90034 to 90634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,855 DEBUG Processing 1/721 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,917 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 204483)] 2025-01-31 09:54:06,055 DEBUG Processing 425/670 atomic regions from SNP 127339 to 127939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,060 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:06,083 DEBUG Processing 302/729 atomic regions from SNP 90334 to 90934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,114 DEBUG Processing 2/721 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,288 DEBUG Processing 426/670 atomic regions from SNP 127639 to 128239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,310 DEBUG Processing 303/729 atomic regions from SNP 90634 to 91234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,355 DEBUG Processing 3/721 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,517 DEBUG Processing 427/670 atomic regions from SNP 127939 to 128539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,540 DEBUG Processing 304/729 atomic regions from SNP 90934 to 91534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,590 DEBUG Processing 4/721 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,749 DEBUG Processing 428/670 atomic regions from SNP 128239 to 128839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,769 DEBUG Processing 305/729 atomic regions from SNP 91234 to 91834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,818 DEBUG Processing 5/721 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,981 DEBUG Processing 429/670 atomic regions from SNP 128539 to 129139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,995 DEBUG Processing 306/729 atomic regions from SNP 91534 to 92134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,059 DEBUG Processing 6/721 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,207 DEBUG Processing 430/670 atomic regions from SNP 128839 to 129439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,233 DEBUG Processing 307/729 atomic regions from SNP 91834 to 92434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,317 DEBUG Processing 7/721 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,431 DEBUG Processing 431/670 atomic regions from SNP 129139 to 129739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,481 DEBUG Processing 308/729 atomic regions from SNP 92134 to 92734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,574 DEBUG Processing 8/721 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,657 DEBUG Processing 432/670 atomic regions from SNP 129439 to 130039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,723 DEBUG Processing 309/729 atomic regions from SNP 92434 to 93034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,812 DEBUG Processing 9/721 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,885 DEBUG Processing 433/670 atomic regions from SNP 129739 to 130339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,946 DEBUG Processing 310/729 atomic regions from SNP 92734 to 93334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,048 DEBUG Processing 10/721 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,111 DEBUG Processing 434/670 atomic regions from SNP 130039 to 130639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,170 DEBUG Processing 311/729 atomic regions from SNP 93034 to 93634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,294 DEBUG Processing 11/721 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,342 DEBUG Processing 435/670 atomic regions from SNP 130339 to 130939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,398 DEBUG Processing 312/729 atomic regions from SNP 93334 to 93934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,545 DEBUG Processing 12/721 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,572 DEBUG Processing 436/670 atomic regions from SNP 130639 to 131239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,622 DEBUG Processing 313/729 atomic regions from SNP 93634 to 94234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,797 DEBUG Processing 13/721 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,803 DEBUG Processing 437/670 atomic regions from SNP 130939 to 131539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,847 DEBUG Processing 314/729 atomic regions from SNP 93934 to 94534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,036 DEBUG Processing 438/670 atomic regions from SNP 131239 to 131839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,041 DEBUG Processing 14/721 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,078 DEBUG Processing 315/729 atomic regions from SNP 94234 to 94834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,270 DEBUG Processing 439/670 atomic regions from SNP 131539 to 132139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,270 DEBUG Processing 15/721 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,308 DEBUG Processing 316/729 atomic regions from SNP 94534 to 95134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,509 DEBUG Processing 440/670 atomic regions from SNP 131839 to 132439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,521 DEBUG Processing 16/721 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,542 DEBUG Processing 317/729 atomic regions from SNP 94834 to 95434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,751 DEBUG Processing 441/670 atomic regions from SNP 132139 to 132739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,765 DEBUG Processing 17/721 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,782 DEBUG Processing 318/729 atomic regions from SNP 95134 to 95734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,994 DEBUG Processing 442/670 atomic regions from SNP 132439 to 133039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,029 DEBUG Processing 18/721 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,045 DEBUG Processing 319/729 atomic regions from SNP 95434 to 96034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,241 DEBUG Processing 443/670 atomic regions from SNP 132739 to 133339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,287 DEBUG Processing 19/721 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,297 DEBUG Processing 320/729 atomic regions from SNP 95734 to 96334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,480 DEBUG Processing 444/670 atomic regions from SNP 133039 to 133639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,539 DEBUG Processing 20/721 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,546 DEBUG Processing 321/729 atomic regions from SNP 96034 to 96634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,715 DEBUG Processing 445/670 atomic regions from SNP 133339 to 133939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,799 DEBUG Processing 21/721 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,804 DEBUG Processing 322/729 atomic regions from SNP 96334 to 96934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,948 DEBUG Processing 446/670 atomic regions from SNP 133639 to 134239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,062 DEBUG Processing 22/721 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,069 DEBUG Processing 323/729 atomic regions from SNP 96634 to 97234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,175 DEBUG Processing 447/670 atomic regions from SNP 133939 to 134539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,312 DEBUG Processing 23/721 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,330 DEBUG Processing 324/729 atomic regions from SNP 96934 to 97534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,423 DEBUG Processing 448/670 atomic regions from SNP 134239 to 134839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,545 DEBUG Processing 24/721 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,579 DEBUG Processing 325/729 atomic regions from SNP 97234 to 97834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,658 DEBUG Processing 449/670 atomic regions from SNP 134539 to 135139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,777 DEBUG Processing 25/721 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,843 DEBUG Processing 326/729 atomic regions from SNP 97534 to 98134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,893 DEBUG Processing 450/670 atomic regions from SNP 134839 to 135439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,011 DEBUG Processing 26/721 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,117 DEBUG Processing 327/729 atomic regions from SNP 97834 to 98434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,135 DEBUG Processing 451/670 atomic regions from SNP 135139 to 135739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,241 DEBUG Processing 27/721 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,373 DEBUG Processing 452/670 atomic regions from SNP 135439 to 136039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,379 DEBUG Processing 328/729 atomic regions from SNP 98134 to 98734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,473 DEBUG Processing 28/721 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,612 DEBUG Processing 453/670 atomic regions from SNP 135739 to 136339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,633 DEBUG Processing 329/729 atomic regions from SNP 98434 to 99034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,704 DEBUG Processing 29/721 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,853 DEBUG Processing 454/670 atomic regions from SNP 136039 to 136639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,893 DEBUG Processing 330/729 atomic regions from SNP 98734 to 99334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,939 DEBUG Processing 30/721 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,090 DEBUG Processing 455/670 atomic regions from SNP 136339 to 136939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,158 DEBUG Processing 331/729 atomic regions from SNP 99034 to 99634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,169 DEBUG Processing 31/721 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,327 DEBUG Processing 456/670 atomic regions from SNP 136639 to 137239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,401 DEBUG Processing 32/721 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,419 DEBUG Processing 332/729 atomic regions from SNP 99334 to 99934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,560 DEBUG Processing 457/670 atomic regions from SNP 136939 to 137539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,628 DEBUG Processing 33/721 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,676 DEBUG Processing 333/729 atomic regions from SNP 99634 to 100234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,791 DEBUG Processing 458/670 atomic regions from SNP 137239 to 137839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,849 DEBUG Processing 34/721 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,926 DEBUG Processing 334/729 atomic regions from SNP 99934 to 100534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,026 DEBUG Processing 459/670 atomic regions from SNP 137539 to 138139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,072 DEBUG Processing 35/721 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,160 DEBUG Processing 335/729 atomic regions from SNP 100234 to 100834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,263 DEBUG Processing 460/670 atomic regions from SNP 137839 to 138439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,297 DEBUG Processing 36/721 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,391 DEBUG Processing 336/729 atomic regions from SNP 100534 to 101134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,502 DEBUG Processing 461/670 atomic regions from SNP 138139 to 138739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,529 DEBUG Processing 37/721 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,645 DEBUG Processing 337/729 atomic regions from SNP 100834 to 101434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,740 DEBUG Processing 462/670 atomic regions from SNP 138439 to 139039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,758 DEBUG Processing 38/721 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,882 DEBUG Processing 338/729 atomic regions from SNP 101134 to 101734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,977 DEBUG Processing 463/670 atomic regions from SNP 138739 to 139339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,990 DEBUG Processing 39/721 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,146 DEBUG Processing 339/729 atomic regions from SNP 101434 to 102034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,212 DEBUG Processing 464/670 atomic regions from SNP 139039 to 139639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,222 DEBUG Processing 40/721 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,417 DEBUG Processing 340/729 atomic regions from SNP 101734 to 102334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,453 DEBUG Processing 465/670 atomic regions from SNP 139339 to 139939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,457 DEBUG Processing 41/721 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,653 DEBUG Processing 341/729 atomic regions from SNP 102034 to 102634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,687 DEBUG Processing 42/721 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,687 DEBUG Processing 466/670 atomic regions from SNP 139639 to 140239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,887 DEBUG Processing 342/729 atomic regions from SNP 102334 to 102934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,919 DEBUG Processing 43/721 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,926 DEBUG Processing 467/670 atomic regions from SNP 139939 to 140539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,124 DEBUG Processing 343/729 atomic regions from SNP 102634 to 103234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,152 DEBUG Processing 44/721 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,173 DEBUG Processing 468/670 atomic regions from SNP 140239 to 140839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,357 DEBUG Processing 344/729 atomic regions from SNP 102934 to 103534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,381 DEBUG Processing 45/721 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,406 DEBUG Processing 469/670 atomic regions from SNP 140539 to 141139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,594 DEBUG Processing 345/729 atomic regions from SNP 103234 to 103834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,618 DEBUG Processing 46/721 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,648 DEBUG Processing 470/670 atomic regions from SNP 140839 to 141439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,827 DEBUG Processing 346/729 atomic regions from SNP 103534 to 104134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,851 DEBUG Processing 47/721 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,891 DEBUG Processing 471/670 atomic regions from SNP 141139 to 141739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,066 DEBUG Processing 347/729 atomic regions from SNP 103834 to 104434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,088 DEBUG Processing 48/721 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,134 DEBUG Processing 472/670 atomic regions from SNP 141439 to 142039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,300 DEBUG Processing 348/729 atomic regions from SNP 104134 to 104734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,320 DEBUG Processing 49/721 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,376 DEBUG Processing 473/670 atomic regions from SNP 141739 to 142339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,542 DEBUG Processing 349/729 atomic regions from SNP 104434 to 105034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,552 DEBUG Processing 50/721 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,618 DEBUG Processing 474/670 atomic regions from SNP 142039 to 142639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,786 DEBUG Processing 51/721 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,795 DEBUG Processing 350/729 atomic regions from SNP 104734 to 105334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,859 DEBUG Processing 475/670 atomic regions from SNP 142339 to 142939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,037 DEBUG Processing 52/721 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,045 DEBUG Processing 351/729 atomic regions from SNP 105034 to 105634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,095 DEBUG Processing 476/670 atomic regions from SNP 142639 to 143239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,275 DEBUG Processing 53/721 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,289 DEBUG Processing 352/729 atomic regions from SNP 105334 to 105934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,337 DEBUG Processing 477/670 atomic regions from SNP 142939 to 143539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,511 DEBUG Processing 54/721 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,532 DEBUG Processing 353/729 atomic regions from SNP 105634 to 106234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,577 DEBUG Processing 478/670 atomic regions from SNP 143239 to 143839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,750 DEBUG Processing 55/721 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,798 DEBUG Processing 354/729 atomic regions from SNP 105934 to 106534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,820 DEBUG Processing 479/670 atomic regions from SNP 143539 to 144139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,984 DEBUG Processing 56/721 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,053 DEBUG Processing 355/729 atomic regions from SNP 106234 to 106834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,062 DEBUG Processing 480/670 atomic regions from SNP 143839 to 144439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,214 DEBUG Processing 57/721 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,300 DEBUG Processing 481/670 atomic regions from SNP 144139 to 144739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,305 DEBUG Processing 356/729 atomic regions from SNP 106534 to 107134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,440 DEBUG Processing 58/721 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,541 DEBUG Processing 482/670 atomic regions from SNP 144439 to 145039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,569 DEBUG Processing 357/729 atomic regions from SNP 106834 to 107434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,669 DEBUG Processing 59/721 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,784 DEBUG Processing 483/670 atomic regions from SNP 144739 to 145339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,816 DEBUG Processing 358/729 atomic regions from SNP 107134 to 107734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,900 DEBUG Processing 60/721 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,021 DEBUG Processing 484/670 atomic regions from SNP 145039 to 145639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,083 DEBUG Processing 359/729 atomic regions from SNP 107434 to 108034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,135 DEBUG Processing 61/721 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,273 DEBUG Processing 485/670 atomic regions from SNP 145339 to 145939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,348 DEBUG Processing 360/729 atomic regions from SNP 107734 to 108334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,368 DEBUG Processing 62/721 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,516 DEBUG Processing 486/670 atomic regions from SNP 145639 to 146239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,593 DEBUG Processing 361/729 atomic regions from SNP 108034 to 108634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,600 DEBUG Processing 63/721 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,756 DEBUG Processing 487/670 atomic regions from SNP 145939 to 146539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,835 DEBUG Processing 64/721 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,847 DEBUG Processing 362/729 atomic regions from SNP 108334 to 108934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,999 DEBUG Processing 488/670 atomic regions from SNP 146239 to 146839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,074 DEBUG Processing 65/721 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,093 DEBUG Processing 363/729 atomic regions from SNP 108634 to 109234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,243 DEBUG Processing 489/670 atomic regions from SNP 146539 to 147139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,313 DEBUG Processing 66/721 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,334 DEBUG Processing 364/729 atomic regions from SNP 108934 to 109534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,486 DEBUG Processing 490/670 atomic regions from SNP 146839 to 147439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,552 DEBUG Processing 67/721 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,591 DEBUG Processing 365/729 atomic regions from SNP 109234 to 109834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,728 DEBUG Processing 491/670 atomic regions from SNP 147139 to 147739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,789 DEBUG Processing 68/721 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,859 DEBUG Processing 366/729 atomic regions from SNP 109534 to 110134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,976 DEBUG Processing 492/670 atomic regions from SNP 147439 to 148039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,025 DEBUG Processing 69/721 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,130 DEBUG Processing 367/729 atomic regions from SNP 109834 to 110434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,217 DEBUG Processing 493/670 atomic regions from SNP 147739 to 148339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,261 DEBUG Processing 70/721 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,400 DEBUG Processing 368/729 atomic regions from SNP 110134 to 110734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,460 DEBUG Processing 494/670 atomic regions from SNP 148039 to 148639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,500 DEBUG Processing 71/721 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,673 DEBUG Processing 369/729 atomic regions from SNP 110434 to 111034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,714 DEBUG Processing 495/670 atomic regions from SNP 148339 to 148939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,748 DEBUG Processing 72/721 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,945 DEBUG Processing 370/729 atomic regions from SNP 110734 to 111334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,967 DEBUG Processing 496/670 atomic regions from SNP 148639 to 149239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,993 DEBUG Processing 73/721 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,215 DEBUG Processing 371/729 atomic regions from SNP 111034 to 111634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,219 DEBUG Processing 497/670 atomic regions from SNP 148939 to 149539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,238 DEBUG Processing 74/721 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,468 DEBUG Processing 498/670 atomic regions from SNP 149239 to 149839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,475 DEBUG Processing 75/721 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,483 DEBUG Processing 372/729 atomic regions from SNP 111334 to 111934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,713 DEBUG Processing 499/670 atomic regions from SNP 149539 to 150139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,722 DEBUG Processing 76/721 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,742 DEBUG Processing 373/729 atomic regions from SNP 111634 to 112234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,958 DEBUG Processing 77/721 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,959 DEBUG Processing 500/670 atomic regions from SNP 149839 to 150439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,005 DEBUG Processing 374/729 atomic regions from SNP 111934 to 112534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,194 DEBUG Processing 78/721 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,203 DEBUG Processing 501/670 atomic regions from SNP 150139 to 150739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,275 DEBUG Processing 375/729 atomic regions from SNP 112234 to 112834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,427 DEBUG Processing 79/721 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,446 DEBUG Processing 502/670 atomic regions from SNP 150439 to 151039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,545 DEBUG Processing 376/729 atomic regions from SNP 112534 to 113134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,661 DEBUG Processing 80/721 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,683 DEBUG Processing 503/670 atomic regions from SNP 150739 to 151339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,813 DEBUG Processing 377/729 atomic regions from SNP 112834 to 113434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,895 DEBUG Processing 81/721 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,923 DEBUG Processing 504/670 atomic regions from SNP 151039 to 151639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,081 DEBUG Processing 378/729 atomic regions from SNP 113134 to 113734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,140 DEBUG Processing 82/721 atomic regions from SNP 24381 to 24982 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,177 DEBUG Processing 505/670 atomic regions from SNP 151339 to 151939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,362 DEBUG Processing 379/729 atomic regions from SNP 113434 to 114034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,384 DEBUG Processing 83/721 atomic regions from SNP 24682 to 25283 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,424 DEBUG Processing 506/670 atomic regions from SNP 151639 to 152239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,622 DEBUG Processing 380/729 atomic regions from SNP 113734 to 114334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,624 DEBUG Processing 84/721 atomic regions from SNP 24983 to 25584 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,667 DEBUG Processing 507/670 atomic regions from SNP 151939 to 152539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,867 DEBUG Processing 85/721 atomic regions from SNP 25284 to 25885 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,895 DEBUG Processing 381/729 atomic regions from SNP 114034 to 114634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,918 DEBUG Processing 508/670 atomic regions from SNP 152239 to 152839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,120 DEBUG Processing 86/721 atomic regions from SNP 25585 to 26186 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,172 DEBUG Processing 382/729 atomic regions from SNP 114334 to 114934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,175 DEBUG Processing 509/670 atomic regions from SNP 152539 to 153139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,349 DEBUG Processing 87/721 atomic regions from SNP 25886 to 26487 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,418 DEBUG Processing 510/670 atomic regions from SNP 152839 to 153439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,420 DEBUG Processing 383/729 atomic regions from SNP 114634 to 115234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,574 DEBUG Processing 88/721 atomic regions from SNP 26187 to 26788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,661 DEBUG Processing 511/670 atomic regions from SNP 153139 to 153739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,679 DEBUG Processing 384/729 atomic regions from SNP 114934 to 115534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,799 DEBUG Processing 89/721 atomic regions from SNP 26488 to 27089 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,910 DEBUG Processing 512/670 atomic regions from SNP 153439 to 154039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,932 DEBUG Processing 385/729 atomic regions from SNP 115234 to 115834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,026 DEBUG Processing 90/721 atomic regions from SNP 26789 to 27390 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,162 DEBUG Processing 513/670 atomic regions from SNP 153739 to 154339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,203 DEBUG Processing 386/729 atomic regions from SNP 115534 to 116134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,260 DEBUG Processing 91/721 atomic regions from SNP 27090 to 27691 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,413 DEBUG Processing 514/670 atomic regions from SNP 154039 to 154639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,470 DEBUG Processing 387/729 atomic regions from SNP 115834 to 116434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,494 DEBUG Processing 92/721 atomic regions from SNP 27391 to 27992 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,660 DEBUG Processing 515/670 atomic regions from SNP 154339 to 154939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,718 DEBUG Processing 388/729 atomic regions from SNP 116134 to 116734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,733 DEBUG Processing 93/721 atomic regions from SNP 27692 to 28293 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,910 DEBUG Processing 516/670 atomic regions from SNP 154639 to 155239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,972 DEBUG Processing 389/729 atomic regions from SNP 116434 to 117034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,983 DEBUG Processing 94/721 atomic regions from SNP 27993 to 28594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,158 DEBUG Processing 517/670 atomic regions from SNP 154939 to 155539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,231 DEBUG Processing 95/721 atomic regions from SNP 28294 to 28895 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,235 DEBUG Processing 390/729 atomic regions from SNP 116734 to 117334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,404 DEBUG Processing 518/670 atomic regions from SNP 155239 to 155839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,471 DEBUG Processing 96/721 atomic regions from SNP 28595 to 29196 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,484 DEBUG Processing 391/729 atomic regions from SNP 117034 to 117634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,662 DEBUG Processing 519/670 atomic regions from SNP 155539 to 156139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,710 DEBUG Processing 97/721 atomic regions from SNP 28896 to 29497 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,728 DEBUG Processing 392/729 atomic regions from SNP 117334 to 117934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,914 DEBUG Processing 520/670 atomic regions from SNP 155839 to 156439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,956 DEBUG Processing 98/721 atomic regions from SNP 29197 to 29798 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,975 DEBUG Processing 393/729 atomic regions from SNP 117634 to 118234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,164 DEBUG Processing 521/670 atomic regions from SNP 156139 to 156739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,199 DEBUG Processing 99/721 atomic regions from SNP 29498 to 30099 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,220 DEBUG Processing 394/729 atomic regions from SNP 117934 to 118534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,437 DEBUG Processing 522/670 atomic regions from SNP 156439 to 157039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,447 DEBUG Processing 100/721 atomic regions from SNP 29799 to 30400 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,462 DEBUG Processing 395/729 atomic regions from SNP 118234 to 118834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,681 DEBUG Processing 523/670 atomic regions from SNP 156739 to 157339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,699 DEBUG Processing 101/721 atomic regions from SNP 30100 to 30701 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,701 DEBUG Processing 396/729 atomic regions from SNP 118534 to 119134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,920 DEBUG Processing 524/670 atomic regions from SNP 157039 to 157639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,938 DEBUG Processing 397/729 atomic regions from SNP 118834 to 119434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,961 DEBUG Processing 102/721 atomic regions from SNP 30401 to 31002 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,166 DEBUG Processing 525/670 atomic regions from SNP 157339 to 157939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,183 DEBUG Processing 398/729 atomic regions from SNP 119134 to 119734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,224 DEBUG Processing 103/721 atomic regions from SNP 30702 to 31303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,419 DEBUG Processing 526/670 atomic regions from SNP 157639 to 158239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,438 DEBUG Processing 399/729 atomic regions from SNP 119434 to 120034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,477 DEBUG Processing 104/721 atomic regions from SNP 31003 to 31604 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,675 DEBUG Processing 527/670 atomic regions from SNP 157939 to 158539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,687 DEBUG Processing 400/729 atomic regions from SNP 119734 to 120334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,725 DEBUG Processing 105/721 atomic regions from SNP 31304 to 31905 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,924 DEBUG Processing 528/670 atomic regions from SNP 158239 to 158839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,932 DEBUG Processing 401/729 atomic regions from SNP 120034 to 120634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,972 DEBUG Processing 106/721 atomic regions from SNP 31605 to 32206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,172 DEBUG Processing 529/670 atomic regions from SNP 158539 to 159139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,177 DEBUG Processing 402/729 atomic regions from SNP 120334 to 120934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,216 DEBUG Processing 107/721 atomic regions from SNP 31906 to 32507 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,418 DEBUG Processing 530/670 atomic regions from SNP 158839 to 159439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,421 DEBUG Processing 403/729 atomic regions from SNP 120634 to 121234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,439 DEBUG Segmenting atomic regions: 2025-01-31 09:54:31,461 DEBUG Processing 108/721 atomic regions from SNP 32207 to 32808 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,534 DEBUG Processing 1/680 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,666 DEBUG Processing 404/729 atomic regions from SNP 120934 to 121534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,670 DEBUG Processing 531/670 atomic regions from SNP 159139 to 159739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,711 DEBUG Processing 109/721 atomic regions from SNP 32508 to 33109 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,774 DEBUG Processing 2/680 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,907 DEBUG Processing 405/729 atomic regions from SNP 121234 to 121834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,917 DEBUG Processing 532/670 atomic regions from SNP 159439 to 160039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,949 DEBUG Processing 110/721 atomic regions from SNP 32809 to 33410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,008 DEBUG Processing 3/680 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,156 DEBUG Processing 406/729 atomic regions from SNP 121534 to 122134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,167 DEBUG Processing 533/670 atomic regions from SNP 159739 to 160339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,190 DEBUG Processing 111/721 atomic regions from SNP 33110 to 33711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,243 DEBUG Processing 4/680 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,401 DEBUG Processing 407/729 atomic regions from SNP 121834 to 122434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,416 DEBUG Processing 534/670 atomic regions from SNP 160039 to 160639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,430 DEBUG Processing 112/721 atomic regions from SNP 33411 to 34012 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,476 DEBUG Processing 5/680 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,644 DEBUG Processing 408/729 atomic regions from SNP 122134 to 122734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,669 DEBUG Processing 113/721 atomic regions from SNP 33712 to 34313 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,673 DEBUG Processing 535/670 atomic regions from SNP 160339 to 160939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,702 DEBUG Processing 6/680 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,892 DEBUG Processing 409/729 atomic regions from SNP 122434 to 123034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,904 DEBUG Processing 114/721 atomic regions from SNP 34013 to 34614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,914 DEBUG Processing 536/670 atomic regions from SNP 160639 to 161239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,932 DEBUG Processing 7/680 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,144 DEBUG Processing 115/721 atomic regions from SNP 34314 to 34915 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,147 DEBUG Processing 410/729 atomic regions from SNP 122734 to 123334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,162 DEBUG Processing 537/670 atomic regions from SNP 160939 to 161539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,164 DEBUG Processing 8/680 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,399 DEBUG Processing 9/680 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,403 DEBUG Processing 116/721 atomic regions from SNP 34615 to 35216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,403 DEBUG Processing 411/729 atomic regions from SNP 123034 to 123634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,408 DEBUG Processing 538/670 atomic regions from SNP 161239 to 161839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,637 DEBUG Processing 10/680 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,650 DEBUG Processing 539/670 atomic regions from SNP 161539 to 162139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,653 DEBUG Processing 412/729 atomic regions from SNP 123334 to 123934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,674 DEBUG Processing 117/721 atomic regions from SNP 34916 to 35517 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,871 DEBUG Processing 11/680 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,898 DEBUG Processing 413/729 atomic regions from SNP 123634 to 124234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,899 DEBUG Processing 540/670 atomic regions from SNP 161839 to 162439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,926 DEBUG Processing 118/721 atomic regions from SNP 35217 to 35818 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,108 DEBUG Processing 12/680 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,139 DEBUG Processing 414/729 atomic regions from SNP 123934 to 124534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,144 DEBUG Processing 541/670 atomic regions from SNP 162139 to 162739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,169 DEBUG Processing 119/721 atomic regions from SNP 35518 to 36119 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,343 DEBUG Processing 13/680 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,393 DEBUG Processing 415/729 atomic regions from SNP 124234 to 124834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,394 DEBUG Processing 542/670 atomic regions from SNP 162439 to 163039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,413 DEBUG Processing 120/721 atomic regions from SNP 35819 to 36420 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,591 DEBUG Processing 14/680 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,644 DEBUG Processing 543/670 atomic regions from SNP 162739 to 163339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,645 DEBUG Processing 416/729 atomic regions from SNP 124534 to 125134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,659 DEBUG Processing 121/721 atomic regions from SNP 36120 to 36721 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,822 DEBUG Processing 15/680 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,884 DEBUG Processing 417/729 atomic regions from SNP 124834 to 125434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,885 DEBUG Processing 544/670 atomic regions from SNP 163039 to 163639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,893 DEBUG Processing 122/721 atomic regions from SNP 36421 to 37022 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,059 DEBUG Processing 16/680 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,127 DEBUG Processing 418/729 atomic regions from SNP 125134 to 125734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,128 DEBUG Processing 123/721 atomic regions from SNP 36722 to 37323 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,131 DEBUG Processing 545/670 atomic regions from SNP 163339 to 163939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,299 DEBUG Processing 17/680 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,377 DEBUG Processing 124/721 atomic regions from SNP 37023 to 37624 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,382 DEBUG Processing 419/729 atomic regions from SNP 125434 to 126034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,415 DEBUG Processing 546/670 atomic regions from SNP 163639 to 164239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,530 DEBUG Processing 18/680 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,615 DEBUG Processing 125/721 atomic regions from SNP 37324 to 37925 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,646 DEBUG Processing 420/729 atomic regions from SNP 125734 to 126334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,659 DEBUG Processing 547/670 atomic regions from SNP 163939 to 164539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,764 DEBUG Processing 19/680 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,857 DEBUG Processing 126/721 atomic regions from SNP 37625 to 38226 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,908 DEBUG Processing 548/670 atomic regions from SNP 164239 to 164839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,918 DEBUG Processing 421/729 atomic regions from SNP 126034 to 126634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,997 DEBUG Processing 20/680 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,097 DEBUG Processing 127/721 atomic regions from SNP 37926 to 38527 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,155 DEBUG Processing 549/670 atomic regions from SNP 164539 to 165139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,188 DEBUG Processing 422/729 atomic regions from SNP 126334 to 126934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,232 DEBUG Processing 21/680 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,334 DEBUG Processing 128/721 atomic regions from SNP 38227 to 38828 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,398 DEBUG Processing 550/670 atomic regions from SNP 164839 to 165439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,430 DEBUG Processing 423/729 atomic regions from SNP 126634 to 127234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,464 DEBUG Processing 22/680 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,569 DEBUG Processing 129/721 atomic regions from SNP 38528 to 39129 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,641 DEBUG Processing 551/670 atomic regions from SNP 165139 to 165739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,678 DEBUG Processing 424/729 atomic regions from SNP 126934 to 127534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,698 DEBUG Processing 23/680 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,805 DEBUG Processing 130/721 atomic regions from SNP 38829 to 39430 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,883 DEBUG Processing 552/670 atomic regions from SNP 165439 to 166039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,916 DEBUG Processing 425/729 atomic regions from SNP 127234 to 127834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,929 DEBUG Processing 24/680 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,043 DEBUG Processing 131/721 atomic regions from SNP 39130 to 39731 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,125 DEBUG Processing 553/670 atomic regions from SNP 165739 to 166339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,157 DEBUG Processing 426/729 atomic regions from SNP 127534 to 128134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,158 DEBUG Processing 25/680 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,278 DEBUG Processing 132/721 atomic regions from SNP 39431 to 40032 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,361 DEBUG Processing 554/670 atomic regions from SNP 166039 to 166639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,383 DEBUG Processing 26/680 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,395 DEBUG Processing 427/729 atomic regions from SNP 127834 to 128434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,517 DEBUG Processing 133/721 atomic regions from SNP 39732 to 40333 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,607 DEBUG Processing 555/670 atomic regions from SNP 166339 to 166939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,614 DEBUG Processing 27/680 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,635 DEBUG Processing 428/729 atomic regions from SNP 128134 to 128734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,755 DEBUG Processing 134/721 atomic regions from SNP 40033 to 40634 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,848 DEBUG Processing 28/680 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,858 DEBUG Processing 556/670 atomic regions from SNP 166639 to 167239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,881 DEBUG Processing 429/729 atomic regions from SNP 128434 to 129034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,997 DEBUG Processing 135/721 atomic regions from SNP 40334 to 40935 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,082 DEBUG Processing 29/680 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,106 DEBUG Processing 557/670 atomic regions from SNP 166939 to 167539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,127 DEBUG Processing 430/729 atomic regions from SNP 128734 to 129334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,240 DEBUG Processing 136/721 atomic regions from SNP 40635 to 41236 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,317 DEBUG Processing 30/680 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,349 DEBUG Processing 558/670 atomic regions from SNP 167239 to 167839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,370 DEBUG Processing 431/729 atomic regions from SNP 129034 to 129634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,485 DEBUG Processing 137/721 atomic regions from SNP 40936 to 41537 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,555 DEBUG Processing 31/680 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,593 DEBUG Processing 559/670 atomic regions from SNP 167539 to 168139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,611 DEBUG Processing 432/729 atomic regions from SNP 129334 to 129934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,730 DEBUG Processing 138/721 atomic regions from SNP 41237 to 41838 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,788 DEBUG Processing 32/680 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,843 DEBUG Processing 560/670 atomic regions from SNP 167839 to 168439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,851 DEBUG Processing 433/729 atomic regions from SNP 129634 to 130234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,973 DEBUG Processing 139/721 atomic regions from SNP 41538 to 42139 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,026 DEBUG Processing 33/680 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,085 DEBUG Processing 561/670 atomic regions from SNP 168139 to 168739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,092 DEBUG Processing 434/729 atomic regions from SNP 129934 to 130534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,214 DEBUG Processing 140/721 atomic regions from SNP 41839 to 42440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,280 DEBUG Processing 34/680 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,330 DEBUG Processing 562/670 atomic regions from SNP 168439 to 169039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,348 DEBUG Processing 435/729 atomic regions from SNP 130234 to 130834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,453 DEBUG Processing 141/721 atomic regions from SNP 42140 to 42741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,531 DEBUG Processing 35/680 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,570 DEBUG Processing 563/670 atomic regions from SNP 168739 to 169339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,604 DEBUG Processing 436/729 atomic regions from SNP 130534 to 131134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,689 DEBUG Processing 142/721 atomic regions from SNP 42441 to 43042 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,770 DEBUG Processing 36/680 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,815 DEBUG Processing 564/670 atomic regions from SNP 169039 to 169639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,849 DEBUG Processing 437/729 atomic regions from SNP 130834 to 131434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,926 DEBUG Processing 143/721 atomic regions from SNP 42742 to 43343 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,008 DEBUG Processing 37/680 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,063 DEBUG Processing 565/670 atomic regions from SNP 169339 to 169939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,118 DEBUG Processing 438/729 atomic regions from SNP 131134 to 131734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,169 DEBUG Processing 144/721 atomic regions from SNP 43043 to 43644 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,245 DEBUG Processing 38/680 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,314 DEBUG Processing 566/670 atomic regions from SNP 169639 to 170239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,388 DEBUG Processing 439/729 atomic regions from SNP 131434 to 132034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,411 DEBUG Processing 145/721 atomic regions from SNP 43344 to 43945 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,490 DEBUG Processing 39/680 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,571 DEBUG Processing 567/670 atomic regions from SNP 169939 to 170539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,641 DEBUG Processing 440/729 atomic regions from SNP 131734 to 132334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,660 DEBUG Processing 146/721 atomic regions from SNP 43645 to 44246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,734 DEBUG Processing 40/680 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,820 DEBUG Processing 568/670 atomic regions from SNP 170239 to 170839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,876 DEBUG Processing 441/729 atomic regions from SNP 132034 to 132634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,892 DEBUG Processing 147/721 atomic regions from SNP 43946 to 44547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,985 DEBUG Processing 41/680 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,082 DEBUG Processing 569/670 atomic regions from SNP 170539 to 171139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,114 DEBUG Processing 442/729 atomic regions from SNP 132334 to 132934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,126 DEBUG Processing 148/721 atomic regions from SNP 44247 to 44848 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,214 DEBUG Processing 42/680 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,329 DEBUG Processing 570/670 atomic regions from SNP 170839 to 171439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,354 DEBUG Processing 443/729 atomic regions from SNP 132634 to 133234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,367 DEBUG Processing 149/721 atomic regions from SNP 44548 to 45149 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,441 DEBUG Processing 43/680 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,578 DEBUG Processing 571/670 atomic regions from SNP 171139 to 171739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,597 DEBUG Processing 444/729 atomic regions from SNP 132934 to 133534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,606 DEBUG Processing 150/721 atomic regions from SNP 44849 to 45450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,670 DEBUG Processing 44/680 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,825 DEBUG Processing 572/670 atomic regions from SNP 171439 to 172039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,838 DEBUG Processing 445/729 atomic regions from SNP 133234 to 133834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,841 DEBUG Processing 151/721 atomic regions from SNP 45150 to 45750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,894 DEBUG Processing 45/680 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,073 DEBUG Processing 573/670 atomic regions from SNP 171739 to 172339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,085 DEBUG Processing 152/721 atomic regions from SNP 45450 to 46050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,085 DEBUG Processing 446/729 atomic regions from SNP 133534 to 134134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,129 DEBUG Processing 46/680 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,324 DEBUG Processing 574/670 atomic regions from SNP 172039 to 172639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,330 DEBUG Processing 153/721 atomic regions from SNP 45750 to 46350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,334 DEBUG Processing 447/729 atomic regions from SNP 133834 to 134434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,366 DEBUG Processing 47/680 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,578 DEBUG Processing 154/721 atomic regions from SNP 46050 to 46650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,580 DEBUG Processing 575/670 atomic regions from SNP 172339 to 172939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,587 DEBUG Processing 448/729 atomic regions from SNP 134134 to 134734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,606 DEBUG Processing 48/680 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,834 DEBUG Processing 155/721 atomic regions from SNP 46350 to 46950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,837 DEBUG Processing 576/670 atomic regions from SNP 172639 to 173239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,841 DEBUG Processing 49/680 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,844 DEBUG Processing 449/729 atomic regions from SNP 134434 to 135034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,082 DEBUG Processing 50/680 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,085 DEBUG Processing 156/721 atomic regions from SNP 46650 to 47250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,086 DEBUG Processing 577/670 atomic regions from SNP 172939 to 173539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,095 DEBUG Processing 450/729 atomic regions from SNP 134734 to 135334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,320 DEBUG Processing 51/680 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,329 DEBUG Processing 157/721 atomic regions from SNP 46950 to 47550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,336 DEBUG Processing 578/670 atomic regions from SNP 173239 to 173839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,343 DEBUG Processing 451/729 atomic regions from SNP 135034 to 135634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,559 DEBUG Processing 52/680 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,576 DEBUG Processing 158/721 atomic regions from SNP 47250 to 47850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,590 DEBUG Processing 579/670 atomic regions from SNP 173539 to 174139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,591 DEBUG Processing 452/729 atomic regions from SNP 135334 to 135934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,792 DEBUG Processing 53/680 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,815 DEBUG Processing 159/721 atomic regions from SNP 47550 to 48150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,835 DEBUG Processing 580/670 atomic regions from SNP 173839 to 174439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,841 DEBUG Processing 453/729 atomic regions from SNP 135634 to 136234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,024 DEBUG Processing 54/680 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,053 DEBUG Processing 160/721 atomic regions from SNP 47850 to 48450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,078 DEBUG Processing 581/670 atomic regions from SNP 174139 to 174739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,096 DEBUG Processing 454/729 atomic regions from SNP 135934 to 136534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,258 DEBUG Processing 55/680 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,294 DEBUG Processing 161/721 atomic regions from SNP 48150 to 48750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,332 DEBUG Processing 582/670 atomic regions from SNP 174439 to 175039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,362 DEBUG Processing 455/729 atomic regions from SNP 136234 to 136834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,496 DEBUG Processing 56/680 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,542 DEBUG Processing 162/721 atomic regions from SNP 48450 to 49050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,589 DEBUG Processing 583/670 atomic regions from SNP 174739 to 175339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,623 DEBUG Processing 456/729 atomic regions from SNP 136534 to 137134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,728 DEBUG Processing 57/680 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,786 DEBUG Processing 163/721 atomic regions from SNP 48750 to 49350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,835 DEBUG Processing 584/670 atomic regions from SNP 175039 to 175639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,888 DEBUG Processing 457/729 atomic regions from SNP 136834 to 137434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,962 DEBUG Processing 58/680 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,028 DEBUG Processing 164/721 atomic regions from SNP 49050 to 49650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,087 DEBUG Processing 585/670 atomic regions from SNP 175339 to 175939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,135 DEBUG Processing 458/729 atomic regions from SNP 137134 to 137734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,201 DEBUG Processing 59/680 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,271 DEBUG Processing 165/721 atomic regions from SNP 49350 to 49950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,333 DEBUG Processing 586/670 atomic regions from SNP 175639 to 176239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,380 DEBUG Processing 459/729 atomic regions from SNP 137434 to 138034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,433 DEBUG Processing 60/680 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,508 DEBUG Processing 166/721 atomic regions from SNP 49650 to 50250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,576 DEBUG Processing 587/670 atomic regions from SNP 175939 to 176539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,625 DEBUG Processing 460/729 atomic regions from SNP 137734 to 138334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,682 DEBUG Processing 61/680 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,747 DEBUG Processing 167/721 atomic regions from SNP 49950 to 50550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,815 DEBUG Processing 588/670 atomic regions from SNP 176239 to 176839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,862 DEBUG Processing 461/729 atomic regions from SNP 138034 to 138634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,927 DEBUG Processing 62/680 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,003 DEBUG Processing 168/721 atomic regions from SNP 50250 to 50850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,057 DEBUG Processing 589/670 atomic regions from SNP 176539 to 177139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,101 DEBUG Processing 462/729 atomic regions from SNP 138334 to 138934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,158 DEBUG Processing 63/680 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,255 DEBUG Processing 169/721 atomic regions from SNP 50550 to 51150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,296 DEBUG Processing 590/670 atomic regions from SNP 176839 to 177439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,340 DEBUG Processing 463/729 atomic regions from SNP 138634 to 139234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,390 DEBUG Processing 64/680 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,504 DEBUG Processing 170/721 atomic regions from SNP 50850 to 51450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,536 DEBUG Processing 591/670 atomic regions from SNP 177139 to 177739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,585 DEBUG Processing 464/729 atomic regions from SNP 138934 to 139534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,623 DEBUG Processing 65/680 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,764 DEBUG Processing 171/721 atomic regions from SNP 51150 to 51750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,773 DEBUG Processing 592/670 atomic regions from SNP 177439 to 178039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,819 DEBUG Processing 465/729 atomic regions from SNP 139234 to 139834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,843 DEBUG Processing 66/680 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,008 DEBUG Processing 593/670 atomic regions from SNP 177739 to 178339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,017 DEBUG Processing 172/721 atomic regions from SNP 51450 to 52050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,053 DEBUG Processing 466/729 atomic regions from SNP 139534 to 140134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,068 DEBUG Processing 67/680 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,245 DEBUG Processing 594/670 atomic regions from SNP 178039 to 178639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,247 DEBUG Processing 173/721 atomic regions from SNP 51750 to 52350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,289 DEBUG Processing 467/729 atomic regions from SNP 139834 to 140434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,294 DEBUG Processing 68/680 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,485 DEBUG Processing 174/721 atomic regions from SNP 52050 to 52650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,486 DEBUG Processing 595/670 atomic regions from SNP 178339 to 178939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,524 DEBUG Processing 69/680 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,531 DEBUG Processing 468/729 atomic regions from SNP 140134 to 140734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,729 DEBUG Processing 175/721 atomic regions from SNP 52350 to 52950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,740 DEBUG Processing 596/670 atomic regions from SNP 178639 to 179239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,766 DEBUG Processing 70/680 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,783 DEBUG Processing 469/729 atomic regions from SNP 140434 to 141034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,965 DEBUG Processing 176/721 atomic regions from SNP 52650 to 53250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,987 DEBUG Processing 597/670 atomic regions from SNP 178939 to 179539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,001 DEBUG Processing 71/680 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,028 DEBUG Processing 470/729 atomic regions from SNP 140734 to 141334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,204 DEBUG Processing 177/721 atomic regions from SNP 52950 to 53550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,236 DEBUG Processing 598/670 atomic regions from SNP 179239 to 179839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,238 DEBUG Processing 72/680 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,276 DEBUG Processing 471/729 atomic regions from SNP 141034 to 141634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,448 DEBUG Processing 178/721 atomic regions from SNP 53250 to 53850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,477 DEBUG Processing 73/680 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,485 DEBUG Processing 599/670 atomic regions from SNP 179539 to 180139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,524 DEBUG Processing 472/729 atomic regions from SNP 141334 to 141934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,681 DEBUG Processing 179/721 atomic regions from SNP 53550 to 54150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,712 DEBUG Processing 74/680 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,735 DEBUG Processing 600/670 atomic regions from SNP 179839 to 180439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,773 DEBUG Processing 473/729 atomic regions from SNP 141634 to 142234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,928 DEBUG Processing 180/721 atomic regions from SNP 53850 to 54450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,959 DEBUG Processing 75/680 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,991 DEBUG Processing 601/670 atomic regions from SNP 180139 to 180739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,021 DEBUG Processing 474/729 atomic regions from SNP 141934 to 142534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,169 DEBUG Processing 181/721 atomic regions from SNP 54150 to 54750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,197 DEBUG Processing 76/680 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,249 DEBUG Processing 602/670 atomic regions from SNP 180439 to 181039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,276 DEBUG Processing 475/729 atomic regions from SNP 142234 to 142834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,402 DEBUG Processing 182/721 atomic regions from SNP 54450 to 55050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,425 DEBUG Processing 77/680 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,495 DEBUG Processing 603/670 atomic regions from SNP 180739 to 181339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,521 DEBUG Processing 476/729 atomic regions from SNP 142534 to 143134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,634 DEBUG Processing 183/721 atomic regions from SNP 54750 to 55350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,652 DEBUG Processing 78/680 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,744 DEBUG Processing 604/670 atomic regions from SNP 181039 to 181639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,770 DEBUG Processing 477/729 atomic regions from SNP 142834 to 143434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,870 DEBUG Processing 184/721 atomic regions from SNP 55050 to 55650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,879 DEBUG Processing 79/680 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,994 DEBUG Processing 605/670 atomic regions from SNP 181339 to 181939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,020 DEBUG Processing 478/729 atomic regions from SNP 143134 to 143734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,111 DEBUG Processing 185/721 atomic regions from SNP 55350 to 55950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,114 DEBUG Processing 80/680 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,250 DEBUG Processing 606/670 atomic regions from SNP 181639 to 182239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,276 DEBUG Processing 479/729 atomic regions from SNP 143434 to 144034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,353 DEBUG Processing 81/680 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,358 DEBUG Processing 186/721 atomic regions from SNP 55650 to 56250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,512 DEBUG Processing 607/670 atomic regions from SNP 181939 to 182539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,536 DEBUG Processing 480/729 atomic regions from SNP 143734 to 144334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,603 DEBUG Processing 82/680 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,616 DEBUG Processing 187/721 atomic regions from SNP 55950 to 56550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,773 DEBUG Processing 608/670 atomic regions from SNP 182239 to 182839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,795 DEBUG Processing 481/729 atomic regions from SNP 144034 to 144634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,848 DEBUG Processing 83/680 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,864 DEBUG Processing 188/721 atomic regions from SNP 56250 to 56850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,030 DEBUG Processing 609/670 atomic regions from SNP 182539 to 183139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,048 DEBUG Processing 482/729 atomic regions from SNP 144334 to 144934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,099 DEBUG Processing 84/680 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,112 DEBUG Processing 189/721 atomic regions from SNP 56550 to 57150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,286 DEBUG Processing 610/670 atomic regions from SNP 182839 to 183439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,302 DEBUG Processing 483/729 atomic regions from SNP 144634 to 145234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,339 DEBUG Processing 85/680 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,357 DEBUG Processing 190/721 atomic regions from SNP 56850 to 57450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,555 DEBUG Processing 484/729 atomic regions from SNP 144934 to 145534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,557 DEBUG Processing 611/670 atomic regions from SNP 183139 to 183739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,577 DEBUG Processing 86/680 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,612 DEBUG Processing 191/721 atomic regions from SNP 57150 to 57750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,817 DEBUG Processing 485/729 atomic regions from SNP 145234 to 145834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,821 DEBUG Processing 87/680 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,822 DEBUG Processing 612/670 atomic regions from SNP 183439 to 184039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,864 DEBUG Processing 192/721 atomic regions from SNP 57450 to 58050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,065 DEBUG Processing 88/680 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,070 DEBUG Processing 486/729 atomic regions from SNP 145534 to 146134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,081 DEBUG Processing 613/670 atomic regions from SNP 183739 to 184339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,114 DEBUG Processing 193/721 atomic regions from SNP 57750 to 58350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,308 DEBUG Processing 89/680 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,326 DEBUG Processing 487/729 atomic regions from SNP 145834 to 146434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,340 DEBUG Processing 614/670 atomic regions from SNP 184039 to 184639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,360 DEBUG Processing 194/721 atomic regions from SNP 58050 to 58650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,547 DEBUG Processing 90/680 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,577 DEBUG Processing 488/729 atomic regions from SNP 146134 to 146734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,593 DEBUG Processing 615/670 atomic regions from SNP 184339 to 184939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,606 DEBUG Processing 195/721 atomic regions from SNP 58350 to 58950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,786 DEBUG Processing 91/680 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,836 DEBUG Processing 489/729 atomic regions from SNP 146434 to 147034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,851 DEBUG Processing 616/670 atomic regions from SNP 184639 to 185239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,858 DEBUG Processing 196/721 atomic regions from SNP 58650 to 59250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,028 DEBUG Processing 92/680 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,088 DEBUG Processing 490/729 atomic regions from SNP 146734 to 147334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,099 DEBUG Processing 197/721 atomic regions from SNP 58950 to 59550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,102 DEBUG Processing 617/670 atomic regions from SNP 184939 to 185539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,265 DEBUG Processing 93/680 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,341 DEBUG Processing 491/729 atomic regions from SNP 147034 to 147634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,347 DEBUG Processing 618/670 atomic regions from SNP 185239 to 185839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,350 DEBUG Processing 198/721 atomic regions from SNP 59250 to 59850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,496 DEBUG Processing 94/680 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,587 DEBUG Processing 492/729 atomic regions from SNP 147334 to 147934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,594 DEBUG Processing 199/721 atomic regions from SNP 59550 to 60150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,598 DEBUG Processing 619/670 atomic regions from SNP 185539 to 186139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,735 DEBUG Processing 95/680 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,837 DEBUG Processing 493/729 atomic regions from SNP 147634 to 148234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,843 DEBUG Processing 200/721 atomic regions from SNP 59850 to 60450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,851 DEBUG Processing 620/670 atomic regions from SNP 185839 to 186439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,974 DEBUG Processing 96/680 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,085 DEBUG Processing 494/729 atomic regions from SNP 147934 to 148534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,092 DEBUG Processing 201/721 atomic regions from SNP 60150 to 60750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,106 DEBUG Processing 621/670 atomic regions from SNP 186139 to 186739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,206 DEBUG Processing 97/680 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,334 DEBUG Processing 495/729 atomic regions from SNP 148234 to 148834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,336 DEBUG Processing 202/721 atomic regions from SNP 60450 to 61050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,357 DEBUG Processing 622/670 atomic regions from SNP 186439 to 187039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,436 DEBUG Processing 98/680 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,581 DEBUG Processing 203/721 atomic regions from SNP 60750 to 61350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,582 DEBUG Processing 496/729 atomic regions from SNP 148534 to 149134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,606 DEBUG Processing 623/670 atomic regions from SNP 186739 to 187339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,664 DEBUG Processing 99/680 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,821 DEBUG Processing 204/721 atomic regions from SNP 61050 to 61650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,823 DEBUG Processing 497/729 atomic regions from SNP 148834 to 149434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,857 DEBUG Processing 624/670 atomic regions from SNP 187039 to 187639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,892 DEBUG Processing 100/680 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,061 DEBUG Processing 205/721 atomic regions from SNP 61350 to 61950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,066 DEBUG Processing 498/729 atomic regions from SNP 149134 to 149734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,105 DEBUG Processing 625/670 atomic regions from SNP 187339 to 187939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,123 DEBUG Processing 101/680 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,303 DEBUG Processing 206/721 atomic regions from SNP 61650 to 62250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,317 DEBUG Processing 499/729 atomic regions from SNP 149434 to 150034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,354 DEBUG Processing 626/670 atomic regions from SNP 187639 to 188239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,373 DEBUG Processing 102/680 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,536 DEBUG Processing 207/721 atomic regions from SNP 61950 to 62550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,560 DEBUG Processing 500/729 atomic regions from SNP 149734 to 150334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,600 DEBUG Processing 627/670 atomic regions from SNP 187939 to 188539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,627 DEBUG Processing 103/680 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,771 DEBUG Processing 208/721 atomic regions from SNP 62250 to 62850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,804 DEBUG Processing 501/729 atomic regions from SNP 150034 to 150634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,845 DEBUG Processing 628/670 atomic regions from SNP 188239 to 188839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,889 DEBUG Processing 104/680 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,007 DEBUG Processing 209/721 atomic regions from SNP 62550 to 63150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,054 DEBUG Processing 502/729 atomic regions from SNP 150334 to 150934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,102 DEBUG Processing 629/670 atomic regions from SNP 188539 to 189139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,134 DEBUG Processing 105/680 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,246 DEBUG Processing 210/721 atomic regions from SNP 62850 to 63450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,295 DEBUG Processing 503/729 atomic regions from SNP 150634 to 151234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,345 DEBUG Processing 630/670 atomic regions from SNP 188839 to 189439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,381 DEBUG Processing 106/680 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,479 DEBUG Processing 211/721 atomic regions from SNP 63150 to 63750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,532 DEBUG Processing 504/729 atomic regions from SNP 150934 to 151534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,588 DEBUG Processing 631/670 atomic regions from SNP 189139 to 189739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,637 DEBUG Processing 107/680 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,706 DEBUG Processing 212/721 atomic regions from SNP 63450 to 64050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,735 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:54:56,764 DEBUG Processing 505/729 atomic regions from SNP 151234 to 151834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,820 DEBUG Processing 632/670 atomic regions from SNP 189439 to 190039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,901 DEBUG Processing 108/680 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,943 DEBUG Processing 213/721 atomic regions from SNP 63750 to 64350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,005 DEBUG Processing 506/729 atomic regions from SNP 151534 to 152134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,060 DEBUG Processing 633/670 atomic regions from SNP 189739 to 190339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,145 DEBUG Processing 109/680 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,179 DEBUG Processing 214/721 atomic regions from SNP 64050 to 64650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,243 DEBUG Processing 507/729 atomic regions from SNP 151834 to 152434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,301 DEBUG Processing 634/670 atomic regions from SNP 190039 to 190639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,371 DEBUG Processing 110/680 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,413 DEBUG Processing 215/721 atomic regions from SNP 64350 to 64950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,481 DEBUG Processing 508/729 atomic regions from SNP 152134 to 152734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,541 DEBUG Processing 635/670 atomic regions from SNP 190339 to 190939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,598 DEBUG Processing 111/680 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,653 DEBUG Processing 216/721 atomic regions from SNP 64650 to 65250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,724 DEBUG Processing 509/729 atomic regions from SNP 152434 to 153034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,782 DEBUG Processing 636/670 atomic regions from SNP 190639 to 191239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,856 DEBUG Processing 112/680 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,890 DEBUG Processing 217/721 atomic regions from SNP 64950 to 65550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,978 DEBUG Processing 510/729 atomic regions from SNP 152734 to 153334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,025 DEBUG Processing 637/670 atomic regions from SNP 190939 to 191539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,082 DEBUG Processing 113/680 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,119 DEBUG Processing 218/721 atomic regions from SNP 65250 to 65850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,209 DEBUG Processing 511/729 atomic regions from SNP 153034 to 153634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,262 DEBUG Processing 638/670 atomic regions from SNP 191239 to 191839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,313 DEBUG Processing 114/680 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,343 DEBUG Processing 219/721 atomic regions from SNP 65550 to 66150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,437 DEBUG Processing 512/729 atomic regions from SNP 153334 to 153934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,494 DEBUG Processing 639/670 atomic regions from SNP 191539 to 192139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,565 DEBUG Processing 115/680 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,569 DEBUG Processing 220/721 atomic regions from SNP 65850 to 66450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,668 DEBUG Processing 513/729 atomic regions from SNP 153634 to 154234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,729 DEBUG Processing 640/670 atomic regions from SNP 191839 to 192439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,796 DEBUG Processing 221/721 atomic regions from SNP 66150 to 66750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,819 DEBUG Processing 116/680 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,897 DEBUG Processing 514/729 atomic regions from SNP 153934 to 154534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,967 DEBUG Processing 641/670 atomic regions from SNP 192139 to 192739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,035 DEBUG Processing 222/721 atomic regions from SNP 66450 to 67050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,086 DEBUG Processing 117/680 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,144 DEBUG Processing 515/729 atomic regions from SNP 154234 to 154834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,214 DEBUG Processing 642/670 atomic regions from SNP 192439 to 193039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,273 DEBUG Processing 223/721 atomic regions from SNP 66750 to 67350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,330 DEBUG Processing 118/680 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,392 DEBUG Processing 516/729 atomic regions from SNP 154534 to 155134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,460 DEBUG Processing 643/670 atomic regions from SNP 192739 to 193339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,506 DEBUG Processing 224/721 atomic regions from SNP 67050 to 67650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,556 DEBUG Processing 119/680 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,631 DEBUG Processing 517/729 atomic regions from SNP 154834 to 155434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,708 DEBUG Processing 644/670 atomic regions from SNP 193039 to 193639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,754 DEBUG Processing 225/721 atomic regions from SNP 67350 to 67950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,810 DEBUG Processing 120/680 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,873 DEBUG Processing 518/729 atomic regions from SNP 155134 to 155734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,955 DEBUG Processing 645/670 atomic regions from SNP 193339 to 193939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,997 DEBUG Processing 226/721 atomic regions from SNP 67650 to 68250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,052 DEBUG Processing 121/680 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,115 DEBUG Processing 519/729 atomic regions from SNP 155434 to 156034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,203 DEBUG Processing 646/670 atomic regions from SNP 193639 to 194239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:00,234 DEBUG Processing 227/721 atomic regions from SNP 67950 to 68550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,303 DEBUG Processing 122/680 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,350 DEBUG Processing 520/729 atomic regions from SNP 155734 to 156334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,444 DEBUG Processing 647/670 atomic regions from SNP 193939 to 194539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:00,466 DEBUG Processing 228/721 atomic regions from SNP 68250 to 68850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,538 DEBUG Processing 123/680 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,580 DEBUG Processing 521/729 atomic regions from SNP 156034 to 156634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,678 DEBUG Processing 648/670 atomic regions from SNP 194239 to 194839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:00,694 DEBUG Processing 229/721 atomic regions from SNP 68550 to 69150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,777 DEBUG Processing 124/680 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,838 DEBUG Processing 522/729 atomic regions from SNP 156334 to 156934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,917 DEBUG Processing 649/670 atomic regions from SNP 194539 to 195139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:00,924 DEBUG Processing 230/721 atomic regions from SNP 68850 to 69450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,998 DEBUG Processing 125/680 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,092 DEBUG Processing 523/729 atomic regions from SNP 156634 to 157234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,160 DEBUG Processing 231/721 atomic regions from SNP 69150 to 69750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,164 DEBUG Processing 650/670 atomic regions from SNP 194839 to 195439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:01,223 DEBUG Processing 126/680 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,323 DEBUG Processing 524/729 atomic regions from SNP 156934 to 157534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,385 DEBUG Processing 232/721 atomic regions from SNP 69450 to 70050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,393 DEBUG Processing 651/670 atomic regions from SNP 195139 to 195739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:01,441 DEBUG Processing 127/680 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,550 DEBUG Processing 525/729 atomic regions from SNP 157234 to 157834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,613 DEBUG Processing 233/721 atomic regions from SNP 69750 to 70350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,661 DEBUG Processing 128/680 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,661 DEBUG Processing 652/670 atomic regions from SNP 195439 to 196039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:01,787 DEBUG Processing 526/729 atomic regions from SNP 157534 to 158134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,843 DEBUG Processing 234/721 atomic regions from SNP 70050 to 70650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,883 DEBUG Processing 129/680 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,917 DEBUG Processing 653/670 atomic regions from SNP 195739 to 196339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:02,024 DEBUG Processing 527/729 atomic regions from SNP 157834 to 158434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,073 DEBUG Processing 235/721 atomic regions from SNP 70350 to 70950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,107 DEBUG Processing 130/680 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,155 DEBUG Processing 654/670 atomic regions from SNP 196039 to 196639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:02,266 DEBUG Processing 528/729 atomic regions from SNP 158134 to 158734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,306 DEBUG Processing 236/721 atomic regions from SNP 70650 to 71250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,334 DEBUG Processing 131/680 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,421 DEBUG Processing 655/670 atomic regions from SNP 196339 to 196939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:02,513 DEBUG Processing 529/729 atomic regions from SNP 158434 to 159034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,546 DEBUG Processing 237/721 atomic regions from SNP 70950 to 71550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,563 DEBUG Processing 132/680 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,680 DEBUG Processing 656/670 atomic regions from SNP 196639 to 197239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:02,762 DEBUG Processing 530/729 atomic regions from SNP 158734 to 159334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,787 DEBUG Processing 238/721 atomic regions from SNP 71250 to 71850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,792 DEBUG Processing 133/680 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,939 DEBUG Processing 657/670 atomic regions from SNP 196939 to 197539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:03,010 DEBUG Processing 531/729 atomic regions from SNP 159034 to 159634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,024 DEBUG Processing 134/680 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,025 DEBUG Processing 239/721 atomic regions from SNP 71550 to 72150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,181 DEBUG Processing 658/670 atomic regions from SNP 197239 to 197839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:03,252 DEBUG Processing 532/729 atomic regions from SNP 159334 to 159934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,252 DEBUG Processing 135/680 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,259 DEBUG Processing 240/721 atomic regions from SNP 71850 to 72450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,411 DEBUG Processing 659/670 atomic regions from SNP 197539 to 198139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:03,491 DEBUG Processing 136/680 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,502 DEBUG Processing 241/721 atomic regions from SNP 72150 to 72750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,504 DEBUG Processing 533/729 atomic regions from SNP 159634 to 160234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,639 DEBUG Processing 660/670 atomic regions from SNP 197839 to 198439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:03,715 DEBUG Processing 137/680 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,732 DEBUG Processing 242/721 atomic regions from SNP 72450 to 73050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,738 DEBUG Processing 534/729 atomic regions from SNP 159934 to 160534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,863 DEBUG Processing 661/670 atomic regions from SNP 198139 to 198739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:03,943 DEBUG Processing 138/680 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,966 DEBUG Processing 243/721 atomic regions from SNP 72750 to 73350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,979 DEBUG Processing 535/729 atomic regions from SNP 160234 to 160834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,091 DEBUG Processing 662/670 atomic regions from SNP 198439 to 199039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:04,159 DEBUG Processing 139/680 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,217 DEBUG Processing 536/729 atomic regions from SNP 160534 to 161134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,217 DEBUG Processing 244/721 atomic regions from SNP 73050 to 73650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,313 DEBUG Processing 663/670 atomic regions from SNP 198739 to 199339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:04,365 DEBUG Processing 140/680 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,448 DEBUG Processing 537/729 atomic regions from SNP 160834 to 161434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,449 DEBUG Processing 245/721 atomic regions from SNP 73350 to 73950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,537 DEBUG Processing 664/670 atomic regions from SNP 199039 to 199639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:04,572 DEBUG Processing 141/680 atomic regions from SNP 42140 to 42741 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,672 DEBUG Processing 246/721 atomic regions from SNP 73650 to 74250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,678 DEBUG Processing 538/729 atomic regions from SNP 161134 to 161734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,766 DEBUG Processing 665/670 atomic regions from SNP 199339 to 199939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:04,781 DEBUG Processing 142/680 atomic regions from SNP 42441 to 43042 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,892 DEBUG Processing 247/721 atomic regions from SNP 73950 to 74550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,906 DEBUG Processing 539/729 atomic regions from SNP 161434 to 162034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,992 DEBUG Processing 666/670 atomic regions from SNP 199639 to 200239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:04,993 DEBUG Processing 143/680 atomic regions from SNP 42742 to 43343 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,112 DEBUG Processing 248/721 atomic regions from SNP 74250 to 74850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,138 DEBUG Processing 540/729 atomic regions from SNP 161734 to 162334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,209 DEBUG Processing 144/680 atomic regions from SNP 43043 to 43644 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,214 DEBUG Processing 667/670 atomic regions from SNP 199939 to 200539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:05,336 DEBUG Processing 249/721 atomic regions from SNP 74550 to 75150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,378 DEBUG Processing 541/729 atomic regions from SNP 162034 to 162634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,440 DEBUG Processing 145/680 atomic regions from SNP 43344 to 43945 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,455 DEBUG Processing 668/670 atomic regions from SNP 200239 to 200839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:05,579 DEBUG Processing 250/721 atomic regions from SNP 74850 to 75450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,618 DEBUG Processing 542/729 atomic regions from SNP 162334 to 162934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,668 DEBUG Processing 146/680 atomic regions from SNP 43645 to 44246 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,689 DEBUG Processing 669/670 atomic regions from SNP 200539 to 201139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:05,809 DEBUG Processing 251/721 atomic regions from SNP 75150 to 75750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,860 DEBUG Processing 543/729 atomic regions from SNP 162634 to 163234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,900 DEBUG Processing 147/680 atomic regions from SNP 43946 to 44547 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,931 DEBUG Processing 670/670 atomic regions from SNP 200839 to 201439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:06,040 DEBUG Processing 252/721 atomic regions from SNP 75450 to 76050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,076 DEBUG Unique SNPs positions in subchromosome 2: 201440 2025-01-31 09:55:06,100 DEBUG Processing 544/729 atomic regions from SNP 162934 to 163534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,134 DEBUG Processing 148/680 atomic regions from SNP 44247 to 44848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,261 DEBUG Processing 253/721 atomic regions from SNP 75750 to 76350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,332 DEBUG Processing 545/729 atomic regions from SNP 163234 to 163834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,354 DEBUG Processing 149/680 atomic regions from SNP 44548 to 45149 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,480 DEBUG Processing 254/721 atomic regions from SNP 76050 to 76650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,561 DEBUG Processing 546/729 atomic regions from SNP 163534 to 164134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,576 DEBUG Processing 150/680 atomic regions from SNP 44849 to 45450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,702 DEBUG Processing 255/721 atomic regions from SNP 76350 to 76950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,792 DEBUG Processing 547/729 atomic regions from SNP 163834 to 164434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,797 DEBUG Processing 151/680 atomic regions from SNP 45150 to 45751 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,919 DEBUG Processing 256/721 atomic regions from SNP 76650 to 77250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,021 DEBUG Processing 152/680 atomic regions from SNP 45451 to 46052 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,034 DEBUG Processing 548/729 atomic regions from SNP 164134 to 164734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,134 DEBUG Processing 257/721 atomic regions from SNP 76950 to 77550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,249 DEBUG Processing 153/680 atomic regions from SNP 45752 to 46353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,275 DEBUG Processing 549/729 atomic regions from SNP 164434 to 165034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,365 DEBUG Processing 258/721 atomic regions from SNP 77250 to 77850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,491 DEBUG Processing 154/680 atomic regions from SNP 46053 to 46654 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,503 DEBUG Processing 550/729 atomic regions from SNP 164734 to 165334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,588 DEBUG Processing 259/721 atomic regions from SNP 77550 to 78150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,711 DEBUG Processing 155/680 atomic regions from SNP 46354 to 46955 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,731 DEBUG Processing 551/729 atomic regions from SNP 165034 to 165634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,818 DEBUG Processing 260/721 atomic regions from SNP 77850 to 78450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,935 DEBUG Processing 156/680 atomic regions from SNP 46655 to 47256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,970 DEBUG Processing 552/729 atomic regions from SNP 165334 to 165934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,055 DEBUG Processing 261/721 atomic regions from SNP 78150 to 78750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,163 DEBUG Processing 157/680 atomic regions from SNP 46956 to 47557 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,210 DEBUG Processing 553/729 atomic regions from SNP 165634 to 166234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,301 DEBUG Processing 262/721 atomic regions from SNP 78450 to 79050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,392 DEBUG Processing 158/680 atomic regions from SNP 47257 to 47858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,474 DEBUG Processing 554/729 atomic regions from SNP 165934 to 166534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,536 DEBUG Processing 263/721 atomic regions from SNP 78750 to 79350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,616 DEBUG Processing 159/680 atomic regions from SNP 47558 to 48159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,713 DEBUG Processing 555/729 atomic regions from SNP 166234 to 166834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,776 DEBUG Processing 264/721 atomic regions from SNP 79050 to 79650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,854 DEBUG Processing 160/680 atomic regions from SNP 47859 to 48460 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,963 DEBUG Processing 556/729 atomic regions from SNP 166534 to 167134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,015 DEBUG Processing 265/721 atomic regions from SNP 79350 to 79950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,096 DEBUG Processing 161/680 atomic regions from SNP 48160 to 48761 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,207 DEBUG Processing 557/729 atomic regions from SNP 166834 to 167434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,253 DEBUG Processing 266/721 atomic regions from SNP 79650 to 80250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,323 DEBUG Processing 162/680 atomic regions from SNP 48461 to 49062 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,467 DEBUG Processing 558/729 atomic regions from SNP 167134 to 167734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,503 DEBUG Processing 267/721 atomic regions from SNP 79950 to 80550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,552 DEBUG Processing 163/680 atomic regions from SNP 48762 to 49363 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,712 DEBUG Processing 559/729 atomic regions from SNP 167434 to 168034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,737 DEBUG Processing 268/721 atomic regions from SNP 80250 to 80850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,791 DEBUG Processing 164/680 atomic regions from SNP 49063 to 49664 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,952 DEBUG Processing 560/729 atomic regions from SNP 167734 to 168334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,975 DEBUG Processing 269/721 atomic regions from SNP 80550 to 81150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,021 DEBUG Processing 165/680 atomic regions from SNP 49364 to 49965 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,206 DEBUG Processing 561/729 atomic regions from SNP 168034 to 168634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,240 DEBUG Processing 270/721 atomic regions from SNP 80850 to 81450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,253 DEBUG Processing 166/680 atomic regions from SNP 49665 to 50266 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,463 DEBUG Processing 562/729 atomic regions from SNP 168334 to 168934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,484 DEBUG Processing 167/680 atomic regions from SNP 49966 to 50567 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,489 DEBUG Processing 271/721 atomic regions from SNP 81150 to 81750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,506 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:55:10,508 DEBUG chr12: Signal quantile: 0.994. signal threshold: 17. Best RMSEA: 0.024 2025-01-31 09:55:10,704 DEBUG Processing 563/729 atomic regions from SNP 168634 to 169234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,721 DEBUG Processing 168/680 atomic regions from SNP 50267 to 50868 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,729 DEBUG Processing 272/721 atomic regions from SNP 81450 to 82050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,952 DEBUG Processing 564/729 atomic regions from SNP 168934 to 169534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,961 DEBUG Processing 169/680 atomic regions from SNP 50568 to 51169 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,973 DEBUG Processing 273/721 atomic regions from SNP 81750 to 82350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,189 DEBUG Processing 170/680 atomic regions from SNP 50869 to 51470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,189 DEBUG Processing 565/729 atomic regions from SNP 169234 to 169834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,206 DEBUG Processing 274/721 atomic regions from SNP 82050 to 82650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,421 DEBUG Processing 171/680 atomic regions from SNP 51170 to 51771 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,429 DEBUG Processing 566/729 atomic regions from SNP 169534 to 170134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,440 DEBUG Processing 275/721 atomic regions from SNP 82350 to 82950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,652 DEBUG Processing 172/680 atomic regions from SNP 51471 to 52072 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,660 DEBUG Processing 567/729 atomic regions from SNP 169834 to 170434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,668 DEBUG Processing 276/721 atomic regions from SNP 82650 to 83250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,883 DEBUG Processing 173/680 atomic regions from SNP 51772 to 52373 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,893 DEBUG Processing 568/729 atomic regions from SNP 170134 to 170734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,907 DEBUG Processing 277/721 atomic regions from SNP 82950 to 83550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,110 DEBUG Processing 174/680 atomic regions from SNP 52073 to 52674 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,130 DEBUG Processing 569/729 atomic regions from SNP 170434 to 171034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,139 DEBUG Subchromosome time: 194.56076325604226, subchromosome SNPs: 201440 2025-01-31 09:55:12,139 DEBUG Estimated BADs: [0.26, 1.82, 7.28, 1.82, 5.46, 3.64, 1.82, 0.91, 3.64, 1.82, 5.46, 3.64, 1.82, 3.64, 0.46, 1.82, 0.46, 0.91, 0.46, 0.91, 5.46, 1.82] SNP counts: [175, 21291, 4093, 13869, 4255, 6223, 3591, 9080, 4141, 5776, 12833, 22775, 5505, 10689, 9894, 2753, 13160, 19805, 10197, 15373, 1437, 4700] SNP IDs counts: [175, 21291, 4093, 13869, 4255, 6223, 3591, 9080, 4141, 5776, 12833, 22775, 5505, 10689, 9894, 2753, 13160, 19805, 10197, 15373, 1437, 4700] Critical gap: 619336bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.13Mbp[0.71Mbp], 19.69Mbp, 21.84Mbp, 29.71Mbp, 31.94Mbp, 35.26Mbp, 37.29Mbp, 45.28Mbp, 47.51Mbp, 50.77Mbp, 58.61Mbp, 71.25Mbp, 74.35Mbp, 80.12Mbp, 86.06Mbp, 87.57Mbp, 95.38Mbp, 106.57Mbp, 112.58Mbp, 121.25Mbp, 121.99Mbp, 124.90Mbp] 2025-01-31 09:55:12,139 DEBUG chr14 time: 194.5612608710071 s 2025-01-31 09:55:12,167 DEBUG Processing 278/721 atomic regions from SNP 83250 to 83850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,282 DEBUG chr14: Fitting background model for 22 segments 2025-01-31 09:55:12,324 DEBUG Processing 175/680 atomic regions from SNP 52374 to 52975 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,356 DEBUG Processing 570/729 atomic regions from SNP 170734 to 171334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,413 DEBUG Processing 279/721 atomic regions from SNP 83550 to 84150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,542 DEBUG Processing 176/680 atomic regions from SNP 52675 to 53276 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,584 DEBUG Processing 571/729 atomic regions from SNP 171034 to 171634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,638 DEBUG Processing 280/721 atomic regions from SNP 83850 to 84450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,784 DEBUG Processing 177/680 atomic regions from SNP 52976 to 53577 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,810 DEBUG chr12 total SNP count: 200689 2025-01-31 09:55:12,810 DEBUG chr12 length: 120129022 2025-01-31 09:55:12,810 DEBUG ----------------------------------------- 2025-01-31 09:55:12,810 INFO Processing SNPs in chr12 2025-01-31 09:55:12,815 DEBUG Processing 572/729 atomic regions from SNP 171334 to 171934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,867 DEBUG Processing 281/721 atomic regions from SNP 84150 to 84750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,016 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 200689)] 2025-01-31 09:55:13,032 DEBUG Processing 178/680 atomic regions from SNP 53277 to 53878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,044 DEBUG Processing 573/729 atomic regions from SNP 171634 to 172234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,092 DEBUG Processing 282/721 atomic regions from SNP 84450 to 85050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,158 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:13,278 DEBUG Processing 179/680 atomic regions from SNP 53578 to 54179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,283 DEBUG Processing 574/729 atomic regions from SNP 171934 to 172534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,313 DEBUG Processing 283/721 atomic regions from SNP 84750 to 85350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,509 DEBUG Processing 180/680 atomic regions from SNP 53879 to 54480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,516 DEBUG Processing 575/729 atomic regions from SNP 172234 to 172834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,544 DEBUG Processing 284/721 atomic regions from SNP 85050 to 85650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,732 DEBUG Processing 181/680 atomic regions from SNP 54180 to 54781 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,763 DEBUG Processing 576/729 atomic regions from SNP 172534 to 173134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,773 DEBUG Processing 285/721 atomic regions from SNP 85350 to 85950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,974 DEBUG Processing 182/680 atomic regions from SNP 54481 to 55082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,032 DEBUG Processing 577/729 atomic regions from SNP 172834 to 173434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,033 DEBUG Processing 286/721 atomic regions from SNP 85650 to 86250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,199 DEBUG Processing 183/680 atomic regions from SNP 54782 to 55382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,273 DEBUG Processing 578/729 atomic regions from SNP 173134 to 173734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,282 DEBUG Processing 287/721 atomic regions from SNP 85950 to 86550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,411 DEBUG Processing 184/680 atomic regions from SNP 55082 to 55682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,526 DEBUG Processing 579/729 atomic regions from SNP 173434 to 174034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,534 DEBUG Processing 288/721 atomic regions from SNP 86250 to 86850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,627 DEBUG Processing 185/680 atomic regions from SNP 55382 to 55982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,766 DEBUG Processing 580/729 atomic regions from SNP 173734 to 174334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,781 DEBUG Processing 289/721 atomic regions from SNP 86550 to 87150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,847 DEBUG Processing 186/680 atomic regions from SNP 55682 to 56282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,018 DEBUG Processing 581/729 atomic regions from SNP 174034 to 174634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,042 DEBUG Processing 290/721 atomic regions from SNP 86850 to 87450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,101 DEBUG Processing 187/680 atomic regions from SNP 55982 to 56582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,254 DEBUG Processing 582/729 atomic regions from SNP 174334 to 174934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,301 DEBUG Processing 291/721 atomic regions from SNP 87150 to 87750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,353 DEBUG Processing 188/680 atomic regions from SNP 56282 to 56882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,488 DEBUG Processing 583/729 atomic regions from SNP 174634 to 175234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,534 DEBUG Processing 292/721 atomic regions from SNP 87450 to 88050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,602 DEBUG Processing 189/680 atomic regions from SNP 56582 to 57182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,722 DEBUG Processing 584/729 atomic regions from SNP 174934 to 175534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,755 DEBUG Processing 293/721 atomic regions from SNP 87750 to 88350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,836 DEBUG Processing 190/680 atomic regions from SNP 56882 to 57482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,958 DEBUG Processing 585/729 atomic regions from SNP 175234 to 175834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,969 DEBUG Processing 294/721 atomic regions from SNP 88050 to 88650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,049 DEBUG Processing 191/680 atomic regions from SNP 57182 to 57782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,186 DEBUG Processing 295/721 atomic regions from SNP 88350 to 88950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,190 DEBUG Processing 586/729 atomic regions from SNP 175534 to 176134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,260 DEBUG Processing 192/680 atomic regions from SNP 57482 to 58082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,409 DEBUG Processing 296/721 atomic regions from SNP 88650 to 89250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,416 DEBUG Processing 587/729 atomic regions from SNP 175834 to 176434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,475 DEBUG Processing 193/680 atomic regions from SNP 57782 to 58382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,638 DEBUG Processing 297/721 atomic regions from SNP 88950 to 89550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,655 DEBUG Processing 588/729 atomic regions from SNP 176134 to 176734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,692 DEBUG Processing 194/680 atomic regions from SNP 58082 to 58682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,889 DEBUG Processing 298/721 atomic regions from SNP 89250 to 89850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,896 DEBUG Processing 589/729 atomic regions from SNP 176434 to 177034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,931 DEBUG Processing 195/680 atomic regions from SNP 58382 to 58982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,126 DEBUG Processing 590/729 atomic regions from SNP 176734 to 177334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,129 DEBUG Processing 299/721 atomic regions from SNP 89550 to 90150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,153 DEBUG Processing 196/680 atomic regions from SNP 58682 to 59282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,365 DEBUG Processing 591/729 atomic regions from SNP 177034 to 177634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,369 DEBUG Processing 300/721 atomic regions from SNP 89850 to 90450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,386 DEBUG Processing 197/680 atomic regions from SNP 58982 to 59582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,602 DEBUG Processing 301/721 atomic regions from SNP 90150 to 90750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,612 DEBUG Processing 592/729 atomic regions from SNP 177334 to 177934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,618 DEBUG Processing 198/680 atomic regions from SNP 59282 to 59882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,836 DEBUG Processing 302/721 atomic regions from SNP 90450 to 91050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,850 DEBUG Processing 199/680 atomic regions from SNP 59582 to 60182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,852 DEBUG Processing 593/729 atomic regions from SNP 177634 to 178234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,069 DEBUG Processing 303/721 atomic regions from SNP 90750 to 91350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,090 DEBUG Processing 594/729 atomic regions from SNP 177934 to 178534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,098 DEBUG Processing 200/680 atomic regions from SNP 59882 to 60482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,288 DEBUG Processing 304/721 atomic regions from SNP 91050 to 91650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,313 DEBUG Processing 595/729 atomic regions from SNP 178234 to 178834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,345 DEBUG Processing 201/680 atomic regions from SNP 60182 to 60782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,509 DEBUG Processing 305/721 atomic regions from SNP 91350 to 91950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,546 DEBUG Processing 596/729 atomic regions from SNP 178534 to 179134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,584 DEBUG Processing 202/680 atomic regions from SNP 60482 to 61082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,741 DEBUG Processing 306/721 atomic regions from SNP 91650 to 92250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,776 DEBUG Processing 597/729 atomic regions from SNP 178834 to 179434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,804 DEBUG Processing 203/680 atomic regions from SNP 60782 to 61382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,981 DEBUG Processing 307/721 atomic regions from SNP 91950 to 92550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,016 DEBUG Processing 598/729 atomic regions from SNP 179134 to 179734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,031 DEBUG Processing 204/680 atomic regions from SNP 61082 to 61682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,053 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:55:19,205 DEBUG Processing 308/721 atomic regions from SNP 92250 to 92850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,263 DEBUG Processing 599/729 atomic regions from SNP 179434 to 180034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,277 DEBUG Processing 205/680 atomic regions from SNP 61382 to 61982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,432 DEBUG Processing 309/721 atomic regions from SNP 92550 to 93150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,512 DEBUG Processing 600/729 atomic regions from SNP 179734 to 180334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,536 DEBUG Processing 206/680 atomic regions from SNP 61682 to 62282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,689 DEBUG Processing 310/721 atomic regions from SNP 92850 to 93450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,757 DEBUG Processing 601/729 atomic regions from SNP 180034 to 180634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,762 DEBUG Processing 207/680 atomic regions from SNP 61982 to 62582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,925 DEBUG Processing 311/721 atomic regions from SNP 93150 to 93750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,988 DEBUG Processing 208/680 atomic regions from SNP 62282 to 62882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,017 DEBUG Processing 602/729 atomic regions from SNP 180334 to 180934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,147 DEBUG Processing 312/721 atomic regions from SNP 93450 to 94050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,210 DEBUG Processing 209/680 atomic regions from SNP 62582 to 63182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,265 DEBUG Processing 603/729 atomic regions from SNP 180634 to 181234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,358 DEBUG Processing 313/721 atomic regions from SNP 93750 to 94350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,422 DEBUG Processing 210/680 atomic regions from SNP 62882 to 63482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,495 DEBUG Processing 604/729 atomic regions from SNP 180934 to 181534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,578 DEBUG Processing 314/721 atomic regions from SNP 94050 to 94650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,643 DEBUG Processing 211/680 atomic regions from SNP 63182 to 63782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,741 DEBUG Processing 605/729 atomic regions from SNP 181234 to 181834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,808 DEBUG Processing 315/721 atomic regions from SNP 94350 to 94950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,858 DEBUG Processing 212/680 atomic regions from SNP 63482 to 64082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,982 DEBUG Processing 606/729 atomic regions from SNP 181534 to 182134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,044 DEBUG Processing 316/721 atomic regions from SNP 94650 to 95250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,080 DEBUG Processing 213/680 atomic regions from SNP 63782 to 64382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,233 DEBUG Processing 607/729 atomic regions from SNP 181834 to 182434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,291 DEBUG Processing 317/721 atomic regions from SNP 94950 to 95550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,311 DEBUG Processing 214/680 atomic regions from SNP 64082 to 64682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,471 DEBUG Processing 608/729 atomic regions from SNP 182134 to 182734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,525 DEBUG Processing 318/721 atomic regions from SNP 95250 to 95850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,536 DEBUG Processing 215/680 atomic regions from SNP 64382 to 64982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,704 DEBUG Processing 609/729 atomic regions from SNP 182434 to 183034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,755 DEBUG Processing 319/721 atomic regions from SNP 95550 to 96150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,761 DEBUG Processing 216/680 atomic regions from SNP 64682 to 65282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,939 DEBUG Processing 610/729 atomic regions from SNP 182734 to 183334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,989 DEBUG Processing 217/680 atomic regions from SNP 64982 to 65582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,989 DEBUG Processing 320/721 atomic regions from SNP 95850 to 96450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,173 DEBUG Processing 611/729 atomic regions from SNP 183034 to 183634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,215 DEBUG Processing 218/680 atomic regions from SNP 65282 to 65882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,221 DEBUG Processing 321/721 atomic regions from SNP 96150 to 96750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,406 DEBUG Processing 612/729 atomic regions from SNP 183334 to 183934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,443 DEBUG Processing 219/680 atomic regions from SNP 65582 to 66182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,454 DEBUG Processing 322/721 atomic regions from SNP 96450 to 97050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,644 DEBUG Processing 613/729 atomic regions from SNP 183634 to 184234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,690 DEBUG Processing 220/680 atomic regions from SNP 65882 to 66482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,704 DEBUG Processing 323/721 atomic regions from SNP 96750 to 97350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,883 DEBUG Processing 614/729 atomic regions from SNP 183934 to 184534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,926 DEBUG Processing 221/680 atomic regions from SNP 66182 to 66782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,950 DEBUG Processing 324/721 atomic regions from SNP 97050 to 97650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,113 DEBUG Processing 615/729 atomic regions from SNP 184234 to 184834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,163 DEBUG Processing 222/680 atomic regions from SNP 66482 to 67082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,193 DEBUG Processing 325/721 atomic regions from SNP 97350 to 97950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,348 DEBUG Processing 616/729 atomic regions from SNP 184534 to 185134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,395 DEBUG Processing 223/680 atomic regions from SNP 66782 to 67382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,439 DEBUG Processing 326/721 atomic regions from SNP 97650 to 98250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,576 DEBUG Processing 617/729 atomic regions from SNP 184834 to 185434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,617 DEBUG Processing 224/680 atomic regions from SNP 67082 to 67682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,693 DEBUG Processing 327/721 atomic regions from SNP 97950 to 98550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,811 DEBUG Processing 618/729 atomic regions from SNP 185134 to 185734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,840 DEBUG Processing 225/680 atomic regions from SNP 67382 to 67982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,953 DEBUG Processing 328/721 atomic regions from SNP 98250 to 98850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,040 DEBUG Processing 619/729 atomic regions from SNP 185434 to 186034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,055 DEBUG Processing 226/680 atomic regions from SNP 67682 to 68282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,180 DEBUG Processing 329/721 atomic regions from SNP 98550 to 99150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,274 DEBUG Processing 227/680 atomic regions from SNP 67982 to 68582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,288 DEBUG Processing 620/729 atomic regions from SNP 185734 to 186334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,408 DEBUG Processing 330/721 atomic regions from SNP 98850 to 99450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,499 DEBUG Processing 228/680 atomic regions from SNP 68282 to 68882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,552 DEBUG Processing 621/729 atomic regions from SNP 186034 to 186634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,659 DEBUG Processing 331/721 atomic regions from SNP 99150 to 99750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,712 DEBUG Processing 229/680 atomic regions from SNP 68582 to 69182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,801 DEBUG Processing 622/729 atomic regions from SNP 186334 to 186934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,909 DEBUG Processing 332/721 atomic regions from SNP 99450 to 100050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,931 DEBUG Processing 230/680 atomic regions from SNP 68882 to 69482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,022 DEBUG Processing 623/729 atomic regions from SNP 186634 to 187234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,157 DEBUG Processing 231/680 atomic regions from SNP 69182 to 69782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,171 DEBUG Processing 333/721 atomic regions from SNP 99750 to 100350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,270 DEBUG Processing 624/729 atomic regions from SNP 186934 to 187534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,385 DEBUG Processing 232/680 atomic regions from SNP 69482 to 70082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,421 DEBUG Processing 334/721 atomic regions from SNP 100050 to 100650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,526 DEBUG Processing 625/729 atomic regions from SNP 187234 to 187834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,636 DEBUG Processing 233/680 atomic regions from SNP 69782 to 70382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,671 DEBUG Processing 335/721 atomic regions from SNP 100350 to 100950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,774 DEBUG Processing 626/729 atomic regions from SNP 187534 to 188134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,895 DEBUG Processing 234/680 atomic regions from SNP 70082 to 70682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,915 DEBUG Processing 336/721 atomic regions from SNP 100650 to 101250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,025 DEBUG Processing 627/729 atomic regions from SNP 187834 to 188434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,133 DEBUG Processing 235/680 atomic regions from SNP 70382 to 70982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,170 DEBUG Processing 337/721 atomic regions from SNP 100950 to 101550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,275 DEBUG Processing 628/729 atomic regions from SNP 188134 to 188734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,367 DEBUG Processing 236/680 atomic regions from SNP 70682 to 71282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,411 DEBUG Processing 338/721 atomic regions from SNP 101250 to 101850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,530 DEBUG Processing 629/729 atomic regions from SNP 188434 to 189034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,580 DEBUG Processing 237/680 atomic regions from SNP 70982 to 71582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,667 DEBUG Processing 339/721 atomic regions from SNP 101550 to 102150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,767 DEBUG Processing 630/729 atomic regions from SNP 188734 to 189334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,793 DEBUG Processing 238/680 atomic regions from SNP 71282 to 71882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,910 DEBUG Processing 340/721 atomic regions from SNP 101850 to 102450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,004 DEBUG Processing 239/680 atomic regions from SNP 71582 to 72182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,025 DEBUG Processing 631/729 atomic regions from SNP 189034 to 189634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,143 DEBUG Processing 341/721 atomic regions from SNP 102150 to 102750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,219 DEBUG Processing 240/680 atomic regions from SNP 71882 to 72482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,285 DEBUG Processing 632/729 atomic regions from SNP 189334 to 189934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,388 DEBUG Processing 342/721 atomic regions from SNP 102450 to 103050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,441 DEBUG Processing 241/680 atomic regions from SNP 72182 to 72782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,530 DEBUG Processing 633/729 atomic regions from SNP 189634 to 190234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,632 DEBUG Processing 343/721 atomic regions from SNP 102750 to 103350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,660 DEBUG Processing 242/680 atomic regions from SNP 72482 to 73082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,784 DEBUG Processing 634/729 atomic regions from SNP 189934 to 190534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,866 DEBUG Processing 344/721 atomic regions from SNP 103050 to 103650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,901 DEBUG Processing 243/680 atomic regions from SNP 72782 to 73382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,042 DEBUG Processing 635/729 atomic regions from SNP 190234 to 190834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,104 DEBUG Processing 345/721 atomic regions from SNP 103350 to 103950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,139 DEBUG Processing 244/680 atomic regions from SNP 73082 to 73682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,292 DEBUG Processing 636/729 atomic regions from SNP 190534 to 191134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,348 DEBUG Processing 346/721 atomic regions from SNP 103650 to 104250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,371 DEBUG Processing 245/680 atomic regions from SNP 73382 to 73982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,555 DEBUG Processing 637/729 atomic regions from SNP 190834 to 191434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,587 DEBUG Processing 347/721 atomic regions from SNP 103950 to 104550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,596 DEBUG Processing 246/680 atomic regions from SNP 73682 to 74282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,814 DEBUG Processing 638/729 atomic regions from SNP 191134 to 191734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,818 DEBUG Processing 348/721 atomic regions from SNP 104250 to 104850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,820 DEBUG Processing 247/680 atomic regions from SNP 73982 to 74582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,045 DEBUG Processing 639/729 atomic regions from SNP 191434 to 192034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,048 DEBUG Processing 349/721 atomic regions from SNP 104550 to 105150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,048 DEBUG Processing 248/680 atomic regions from SNP 74282 to 74882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,275 DEBUG Processing 249/680 atomic regions from SNP 74582 to 75182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,275 DEBUG Processing 350/721 atomic regions from SNP 104850 to 105450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,277 DEBUG Processing 640/729 atomic regions from SNP 191734 to 192334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,501 DEBUG Processing 351/721 atomic regions from SNP 105150 to 105750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,505 DEBUG Processing 641/729 atomic regions from SNP 192034 to 192634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,508 DEBUG Processing 250/680 atomic regions from SNP 74882 to 75482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,730 DEBUG Processing 352/721 atomic regions from SNP 105450 to 106050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,756 DEBUG Processing 642/729 atomic regions from SNP 192334 to 192934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,766 DEBUG Processing 251/680 atomic regions from SNP 75182 to 75782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,971 DEBUG Processing 353/721 atomic regions from SNP 105750 to 106350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,999 DEBUG Processing 252/680 atomic regions from SNP 75482 to 76082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,007 DEBUG Processing 643/729 atomic regions from SNP 192634 to 193234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,223 DEBUG Processing 253/680 atomic regions from SNP 75782 to 76382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,228 DEBUG Processing 354/721 atomic regions from SNP 106050 to 106650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,265 DEBUG Processing 644/729 atomic regions from SNP 192934 to 193534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,449 DEBUG Processing 254/680 atomic regions from SNP 76082 to 76682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,458 DEBUG Processing 355/721 atomic regions from SNP 106350 to 106950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,523 DEBUG Processing 645/729 atomic regions from SNP 193234 to 193834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,677 DEBUG Processing 255/680 atomic regions from SNP 76382 to 76982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,692 DEBUG Processing 356/721 atomic regions from SNP 106650 to 107250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,774 DEBUG Processing 646/729 atomic regions from SNP 193534 to 194134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,922 DEBUG Processing 256/680 atomic regions from SNP 76682 to 77282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,928 DEBUG Processing 357/721 atomic regions from SNP 106950 to 107550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,032 DEBUG Processing 647/729 atomic regions from SNP 193834 to 194434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,155 DEBUG Processing 257/680 atomic regions from SNP 76982 to 77582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,165 DEBUG Processing 358/721 atomic regions from SNP 107250 to 107850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,287 DEBUG Processing 648/729 atomic regions from SNP 194134 to 194734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,404 DEBUG Processing 359/721 atomic regions from SNP 107550 to 108150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,409 DEBUG Processing 258/680 atomic regions from SNP 77282 to 77882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,528 DEBUG Processing 649/729 atomic regions from SNP 194434 to 195034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,647 DEBUG Processing 360/721 atomic regions from SNP 107850 to 108450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,663 DEBUG Processing 259/680 atomic regions from SNP 77582 to 78182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,763 DEBUG Processing 650/729 atomic regions from SNP 194734 to 195334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,889 DEBUG Processing 361/721 atomic regions from SNP 108150 to 108750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,899 DEBUG Processing 260/680 atomic regions from SNP 77882 to 78482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,027 DEBUG Processing 651/729 atomic regions from SNP 195034 to 195634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,129 DEBUG Processing 362/721 atomic regions from SNP 108450 to 109050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,132 DEBUG Processing 261/680 atomic regions from SNP 78182 to 78782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,254 DEBUG Processing 652/729 atomic regions from SNP 195334 to 195934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,368 DEBUG Processing 262/680 atomic regions from SNP 78482 to 79082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,371 DEBUG Processing 363/721 atomic regions from SNP 108750 to 109350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,484 DEBUG Processing 653/729 atomic regions from SNP 195634 to 196234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,597 DEBUG Processing 263/680 atomic regions from SNP 78782 to 79382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,612 DEBUG Processing 364/721 atomic regions from SNP 109050 to 109650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,640 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:55:32,642 DEBUG chr15: Signal quantile: 0.992. signal threshold: 20. Best RMSEA: 0.017 2025-01-31 09:55:32,715 DEBUG Processing 654/729 atomic regions from SNP 195934 to 196534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,825 DEBUG Processing 264/680 atomic regions from SNP 79082 to 79682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,848 DEBUG Processing 365/721 atomic regions from SNP 109350 to 109950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,954 DEBUG Processing 655/729 atomic regions from SNP 196234 to 196834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,049 DEBUG Processing 265/680 atomic regions from SNP 79382 to 79982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,083 DEBUG Processing 366/721 atomic regions from SNP 109650 to 110250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,194 DEBUG Processing 656/729 atomic regions from SNP 196534 to 197134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,273 DEBUG Processing 266/680 atomic regions from SNP 79682 to 80282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,312 DEBUG Processing 367/721 atomic regions from SNP 109950 to 110550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,434 DEBUG Processing 657/729 atomic regions from SNP 196834 to 197434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,515 DEBUG Processing 267/680 atomic regions from SNP 79982 to 80582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,536 DEBUG Processing 368/721 atomic regions from SNP 110250 to 110850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,666 DEBUG Processing 658/729 atomic regions from SNP 197134 to 197734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,754 DEBUG Processing 268/680 atomic regions from SNP 80282 to 80882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,763 DEBUG Processing 369/721 atomic regions from SNP 110550 to 111150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,899 DEBUG Processing 659/729 atomic regions from SNP 197434 to 198034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,998 DEBUG Processing 370/721 atomic regions from SNP 110850 to 111450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,003 DEBUG Processing 269/680 atomic regions from SNP 80582 to 81182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,131 DEBUG Processing 660/729 atomic regions from SNP 197734 to 198334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,227 DEBUG Processing 371/721 atomic regions from SNP 111150 to 111750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,257 DEBUG Processing 270/680 atomic regions from SNP 80882 to 81482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,356 DEBUG Processing 661/729 atomic regions from SNP 198034 to 198634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,453 DEBUG Processing 372/721 atomic regions from SNP 111450 to 112050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,504 DEBUG Processing 271/680 atomic regions from SNP 81182 to 81782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,586 DEBUG Processing 662/729 atomic regions from SNP 198334 to 198934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,665 DEBUG chr15 total SNP count: 180626 2025-01-31 09:55:34,665 DEBUG chr15 length: 104043685 2025-01-31 09:55:34,665 DEBUG ----------------------------------------- 2025-01-31 09:55:34,665 INFO Processing SNPs in chr15 2025-01-31 09:55:34,685 DEBUG Processing 373/721 atomic regions from SNP 111750 to 112350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,761 DEBUG Processing 272/680 atomic regions from SNP 81482 to 82082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,831 DEBUG Processing 663/729 atomic regions from SNP 198634 to 199234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,848 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 180626)] 2025-01-31 09:55:34,903 DEBUG Processing 374/721 atomic regions from SNP 112050 to 112650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,973 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:35,001 DEBUG Processing 273/680 atomic regions from SNP 81782 to 82382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,060 DEBUG Processing 664/729 atomic regions from SNP 198934 to 199534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,125 DEBUG Processing 375/721 atomic regions from SNP 112350 to 112950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,234 DEBUG Processing 274/680 atomic regions from SNP 82082 to 82682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,287 DEBUG Processing 665/729 atomic regions from SNP 199234 to 199834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,345 DEBUG Processing 376/721 atomic regions from SNP 112650 to 113250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,459 DEBUG Processing 275/680 atomic regions from SNP 82382 to 82982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,519 DEBUG Processing 666/729 atomic regions from SNP 199534 to 200134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,568 DEBUG Processing 377/721 atomic regions from SNP 112950 to 113550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,672 DEBUG Processing 276/680 atomic regions from SNP 82682 to 83282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,768 DEBUG Processing 667/729 atomic regions from SNP 199834 to 200434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,803 DEBUG Processing 378/721 atomic regions from SNP 113250 to 113850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,880 DEBUG Processing 277/680 atomic regions from SNP 82982 to 83582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,014 DEBUG Processing 668/729 atomic regions from SNP 200134 to 200734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,032 DEBUG Processing 379/721 atomic regions from SNP 113550 to 114150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,095 DEBUG Processing 278/680 atomic regions from SNP 83282 to 83882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,270 DEBUG Processing 380/721 atomic regions from SNP 113850 to 114450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,273 DEBUG Processing 669/729 atomic regions from SNP 200434 to 201034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,317 DEBUG Processing 279/680 atomic regions from SNP 83582 to 84182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,515 DEBUG Processing 381/721 atomic regions from SNP 114150 to 114750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,531 DEBUG Processing 670/729 atomic regions from SNP 200734 to 201334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,553 DEBUG Processing 280/680 atomic regions from SNP 83882 to 84482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,750 DEBUG Processing 382/721 atomic regions from SNP 114450 to 115050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,785 DEBUG Processing 671/729 atomic regions from SNP 201034 to 201634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,796 DEBUG Processing 281/680 atomic regions from SNP 84182 to 84782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,978 DEBUG Processing 383/721 atomic regions from SNP 114750 to 115350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,017 DEBUG Processing 282/680 atomic regions from SNP 84482 to 85082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,031 DEBUG Processing 672/729 atomic regions from SNP 201334 to 201934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,203 DEBUG Processing 384/721 atomic regions from SNP 115050 to 115650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,242 DEBUG Processing 283/680 atomic regions from SNP 84782 to 85382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,266 DEBUG Processing 673/729 atomic regions from SNP 201634 to 202234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,435 DEBUG Processing 385/721 atomic regions from SNP 115350 to 115950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,485 DEBUG Processing 284/680 atomic regions from SNP 85082 to 85682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,498 DEBUG Processing 674/729 atomic regions from SNP 201934 to 202534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,655 DEBUG Processing 386/721 atomic regions from SNP 115650 to 116250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,729 DEBUG Processing 675/729 atomic regions from SNP 202234 to 202834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,730 DEBUG Processing 285/680 atomic regions from SNP 85382 to 85982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,869 DEBUG Processing 387/721 atomic regions from SNP 115950 to 116550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,954 DEBUG Processing 676/729 atomic regions from SNP 202534 to 203134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,961 DEBUG Processing 286/680 atomic regions from SNP 85682 to 86282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,011 DEBUG Segmenting atomic regions: 2025-01-31 09:55:38,082 DEBUG Processing 388/721 atomic regions from SNP 116250 to 116850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,103 DEBUG Processing 1/667 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,183 DEBUG Processing 287/680 atomic regions from SNP 85982 to 86582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,186 DEBUG Processing 677/729 atomic regions from SNP 202834 to 203434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,296 DEBUG Processing 389/721 atomic regions from SNP 116550 to 117150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,324 DEBUG Processing 2/667 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,400 DEBUG Processing 288/680 atomic regions from SNP 86282 to 86882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,414 DEBUG Processing 678/729 atomic regions from SNP 203134 to 203734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,510 DEBUG Processing 390/721 atomic regions from SNP 116850 to 117450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,545 DEBUG Processing 3/667 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,615 DEBUG Processing 289/680 atomic regions from SNP 86582 to 87182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,643 DEBUG Processing 679/729 atomic regions from SNP 203434 to 204034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,745 DEBUG Processing 391/721 atomic regions from SNP 117150 to 117750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,770 DEBUG Processing 4/667 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,835 DEBUG Processing 290/680 atomic regions from SNP 86882 to 87482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,871 DEBUG Processing 680/729 atomic regions from SNP 203734 to 204334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,978 DEBUG Processing 392/721 atomic regions from SNP 117450 to 118050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,999 DEBUG Processing 5/667 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,047 DEBUG Processing 291/680 atomic regions from SNP 87182 to 87782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,095 DEBUG Processing 681/729 atomic regions from SNP 204034 to 204634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,231 DEBUG Processing 393/721 atomic regions from SNP 117750 to 118350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,253 DEBUG Processing 6/667 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,282 DEBUG Processing 292/680 atomic regions from SNP 87482 to 88082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,331 DEBUG Processing 682/729 atomic regions from SNP 204334 to 204934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,483 DEBUG Processing 394/721 atomic regions from SNP 118050 to 118650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,492 DEBUG Processing 7/667 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,502 DEBUG Processing 293/680 atomic regions from SNP 87782 to 88382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,560 DEBUG Processing 683/729 atomic regions from SNP 204634 to 205234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,719 DEBUG Processing 294/680 atomic regions from SNP 88082 to 88682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,724 DEBUG Processing 8/667 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,730 DEBUG Processing 395/721 atomic regions from SNP 118350 to 118950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,790 DEBUG Processing 684/729 atomic regions from SNP 204934 to 205534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,936 DEBUG Processing 295/680 atomic regions from SNP 88382 to 88982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,942 DEBUG Processing 9/667 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,979 DEBUG Processing 396/721 atomic regions from SNP 118650 to 119250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,026 DEBUG Processing 685/729 atomic regions from SNP 205234 to 205834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,148 DEBUG Processing 296/680 atomic regions from SNP 88682 to 89282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,152 DEBUG Processing 10/667 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,230 DEBUG Processing 397/721 atomic regions from SNP 118950 to 119550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,254 DEBUG Processing 686/729 atomic regions from SNP 205534 to 206134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,366 DEBUG Processing 297/680 atomic regions from SNP 88982 to 89582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,386 DEBUG Processing 11/667 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,486 DEBUG Processing 687/729 atomic regions from SNP 205834 to 206434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,494 DEBUG Processing 398/721 atomic regions from SNP 119250 to 119850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,586 DEBUG Processing 298/680 atomic regions from SNP 89282 to 89882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,627 DEBUG Processing 12/667 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,713 DEBUG Processing 688/729 atomic regions from SNP 206134 to 206734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,753 DEBUG Processing 399/721 atomic regions from SNP 119550 to 120150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,804 DEBUG Processing 299/680 atomic regions from SNP 89582 to 90182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,838 DEBUG Processing 13/667 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,939 DEBUG Processing 689/729 atomic regions from SNP 206434 to 207034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,015 DEBUG Processing 400/721 atomic regions from SNP 119850 to 120450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,030 DEBUG Processing 300/680 atomic regions from SNP 89882 to 90482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,056 DEBUG Processing 14/667 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,186 DEBUG Processing 690/729 atomic regions from SNP 206734 to 207334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,268 DEBUG Processing 301/680 atomic regions from SNP 90182 to 90782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,276 DEBUG Processing 401/721 atomic regions from SNP 120150 to 120750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,277 DEBUG Processing 15/667 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,406 DEBUG Processing 691/729 atomic regions from SNP 207034 to 207634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,494 DEBUG Processing 16/667 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,515 DEBUG Processing 302/680 atomic regions from SNP 90482 to 91082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,523 DEBUG Processing 402/721 atomic regions from SNP 120450 to 121050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,626 DEBUG Processing 692/729 atomic regions from SNP 207334 to 207934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,709 DEBUG Processing 17/667 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,776 DEBUG Processing 303/680 atomic regions from SNP 90782 to 91382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,779 DEBUG Processing 403/721 atomic regions from SNP 120750 to 121350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,859 DEBUG Processing 693/729 atomic regions from SNP 207634 to 208234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,926 DEBUG Processing 18/667 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,024 DEBUG Processing 304/680 atomic regions from SNP 91082 to 91682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,037 DEBUG Processing 404/721 atomic regions from SNP 121050 to 121650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,089 DEBUG Processing 694/729 atomic regions from SNP 207934 to 208534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,144 DEBUG Processing 19/667 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,268 DEBUG Processing 305/680 atomic regions from SNP 91382 to 91982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,294 DEBUG Processing 405/721 atomic regions from SNP 121350 to 121950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,334 DEBUG Processing 695/729 atomic regions from SNP 208234 to 208834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,366 DEBUG Processing 20/667 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,511 DEBUG Processing 306/680 atomic regions from SNP 91682 to 92282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,521 DEBUG Processing 406/721 atomic regions from SNP 121650 to 122250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,565 DEBUG Processing 696/729 atomic regions from SNP 208534 to 209134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,586 DEBUG Processing 21/667 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,740 DEBUG Processing 407/721 atomic regions from SNP 121950 to 122550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,758 DEBUG Processing 307/680 atomic regions from SNP 91982 to 92582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,796 DEBUG Processing 697/729 atomic regions from SNP 208834 to 209434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,808 DEBUG Processing 22/667 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,978 DEBUG Processing 408/721 atomic regions from SNP 122250 to 122850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,041 DEBUG Processing 23/667 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,044 DEBUG Processing 308/680 atomic regions from SNP 92282 to 92882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,055 DEBUG Processing 698/729 atomic regions from SNP 209134 to 209734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,188 DEBUG Processing 409/721 atomic regions from SNP 122550 to 123150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,255 DEBUG Processing 24/667 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,298 DEBUG Processing 699/729 atomic regions from SNP 209434 to 210034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,298 DEBUG Processing 309/680 atomic regions from SNP 92582 to 93182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,396 DEBUG Processing 410/721 atomic regions from SNP 122850 to 123450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,466 DEBUG Processing 25/667 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,543 DEBUG Processing 310/680 atomic regions from SNP 92882 to 93482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,550 DEBUG Processing 700/729 atomic regions from SNP 209734 to 210334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,605 DEBUG Processing 411/721 atomic regions from SNP 123150 to 123750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,668 DEBUG Processing 26/667 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,761 DEBUG Processing 311/680 atomic regions from SNP 93182 to 93782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,802 DEBUG Processing 701/729 atomic regions from SNP 210034 to 210634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,821 DEBUG Processing 412/721 atomic regions from SNP 123450 to 124050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,870 DEBUG Processing 27/667 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,982 DEBUG Processing 312/680 atomic regions from SNP 93482 to 94082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,041 DEBUG Processing 702/729 atomic regions from SNP 210334 to 210934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,051 DEBUG Processing 413/721 atomic regions from SNP 123750 to 124350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,077 DEBUG Processing 28/667 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,201 DEBUG Processing 313/680 atomic regions from SNP 93782 to 94382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,270 DEBUG Processing 703/729 atomic regions from SNP 210634 to 211234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,278 DEBUG Processing 414/721 atomic regions from SNP 124050 to 124650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,285 DEBUG Processing 29/667 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,418 DEBUG Processing 314/680 atomic regions from SNP 94082 to 94682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,500 DEBUG Processing 30/667 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,506 DEBUG Processing 704/729 atomic regions from SNP 210934 to 211534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,529 DEBUG Processing 415/721 atomic regions from SNP 124350 to 124950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,647 DEBUG Processing 315/680 atomic regions from SNP 94382 to 94982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,724 DEBUG Processing 31/667 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,767 DEBUG Processing 416/721 atomic regions from SNP 124650 to 125250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,774 DEBUG Processing 705/729 atomic regions from SNP 211234 to 211834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,886 DEBUG Processing 316/680 atomic regions from SNP 94682 to 95282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,949 DEBUG Processing 32/667 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,986 DEBUG Processing 417/721 atomic regions from SNP 124950 to 125550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,006 DEBUG Processing 706/729 atomic regions from SNP 211534 to 212134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,094 DEBUG Processing 317/680 atomic regions from SNP 94982 to 95582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,163 DEBUG Processing 33/667 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,204 DEBUG Processing 418/721 atomic regions from SNP 125250 to 125850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,236 DEBUG Processing 707/729 atomic regions from SNP 211834 to 212434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,298 DEBUG Processing 318/680 atomic regions from SNP 95282 to 95882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,378 DEBUG Processing 34/667 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,442 DEBUG Processing 419/721 atomic regions from SNP 125550 to 126150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,483 DEBUG Processing 708/729 atomic regions from SNP 212134 to 212734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,507 DEBUG Processing 319/680 atomic regions from SNP 95582 to 96182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,589 DEBUG Processing 35/667 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,667 DEBUG Processing 420/721 atomic regions from SNP 125850 to 126450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,711 DEBUG Processing 709/729 atomic regions from SNP 212434 to 213034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,721 DEBUG Processing 320/680 atomic regions from SNP 95882 to 96482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,802 DEBUG Processing 36/667 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,885 DEBUG Processing 421/721 atomic regions from SNP 126150 to 126750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,936 DEBUG Processing 321/680 atomic regions from SNP 96182 to 96782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,949 DEBUG Processing 710/729 atomic regions from SNP 212734 to 213334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,007 DEBUG Processing 37/667 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,099 DEBUG Processing 422/721 atomic regions from SNP 126450 to 127050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,147 DEBUG Processing 322/680 atomic regions from SNP 96482 to 97082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,182 DEBUG Processing 711/729 atomic regions from SNP 213034 to 213634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,220 DEBUG Processing 38/667 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,318 DEBUG Processing 423/721 atomic regions from SNP 126750 to 127350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,362 DEBUG Processing 323/680 atomic regions from SNP 96782 to 97382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,425 DEBUG Processing 712/729 atomic regions from SNP 213334 to 213934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,442 DEBUG Processing 39/667 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,555 DEBUG Processing 424/721 atomic regions from SNP 127050 to 127650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,582 DEBUG Processing 324/680 atomic regions from SNP 97082 to 97682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,661 DEBUG Processing 40/667 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,673 DEBUG Processing 713/729 atomic regions from SNP 213634 to 214234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,775 DEBUG Processing 425/721 atomic regions from SNP 127350 to 127950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,827 DEBUG Processing 325/680 atomic regions from SNP 97382 to 97982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,881 DEBUG Processing 41/667 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,916 DEBUG Processing 714/729 atomic regions from SNP 213934 to 214534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,998 DEBUG Processing 426/721 atomic regions from SNP 127650 to 128250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,075 DEBUG Processing 326/680 atomic regions from SNP 97682 to 98282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,101 DEBUG Processing 42/667 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,175 DEBUG Processing 715/729 atomic regions from SNP 214234 to 214834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,220 DEBUG Processing 427/721 atomic regions from SNP 127950 to 128550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,319 DEBUG Processing 43/667 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,325 DEBUG Processing 327/680 atomic regions from SNP 97982 to 98582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,429 DEBUG Processing 716/729 atomic regions from SNP 214534 to 215134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,451 DEBUG Processing 428/721 atomic regions from SNP 128250 to 128850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,535 DEBUG Processing 44/667 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,566 DEBUG Processing 328/680 atomic regions from SNP 98282 to 98882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,665 DEBUG Processing 717/729 atomic regions from SNP 214834 to 215434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,696 DEBUG Processing 429/721 atomic regions from SNP 128550 to 129150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,751 DEBUG Processing 45/667 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,784 DEBUG Processing 329/680 atomic regions from SNP 98582 to 99182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,855 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:55:47,903 DEBUG Processing 718/729 atomic regions from SNP 215134 to 215734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,923 DEBUG Processing 430/721 atomic regions from SNP 128850 to 129450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,968 DEBUG Processing 46/667 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,004 DEBUG Processing 330/680 atomic regions from SNP 98882 to 99482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,152 DEBUG Processing 719/729 atomic regions from SNP 215434 to 216034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,165 DEBUG Processing 431/721 atomic regions from SNP 129150 to 129750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,188 DEBUG Processing 47/667 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,224 DEBUG Processing 331/680 atomic regions from SNP 99182 to 99782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,400 DEBUG Processing 720/729 atomic regions from SNP 215734 to 216334 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,410 DEBUG Processing 48/667 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,423 DEBUG Processing 432/721 atomic regions from SNP 129450 to 130050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,449 DEBUG Processing 332/680 atomic regions from SNP 99482 to 100082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,629 DEBUG Processing 49/667 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,631 DEBUG Processing 721/729 atomic regions from SNP 216034 to 216634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,673 DEBUG Processing 333/680 atomic regions from SNP 99782 to 100382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,681 DEBUG Processing 433/721 atomic regions from SNP 129750 to 130350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,843 DEBUG Processing 50/667 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,864 DEBUG Processing 722/729 atomic regions from SNP 216334 to 216934 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,915 DEBUG Processing 334/680 atomic regions from SNP 100082 to 100682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,939 DEBUG Processing 434/721 atomic regions from SNP 130050 to 130650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,050 DEBUG Processing 51/667 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,100 DEBUG Processing 723/729 atomic regions from SNP 216634 to 217234 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,167 DEBUG Processing 335/680 atomic regions from SNP 100382 to 100982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,181 DEBUG Processing 435/721 atomic regions from SNP 130350 to 130950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,261 DEBUG Processing 52/667 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,339 DEBUG Processing 724/729 atomic regions from SNP 216934 to 217534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,420 DEBUG Processing 336/680 atomic regions from SNP 100682 to 101282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,429 DEBUG Processing 436/721 atomic regions from SNP 130650 to 131250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,477 DEBUG Processing 53/667 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,581 DEBUG Processing 725/729 atomic regions from SNP 217234 to 217834 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,644 DEBUG Processing 337/680 atomic regions from SNP 100982 to 101582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,663 DEBUG Processing 437/721 atomic regions from SNP 130950 to 131550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,694 DEBUG Processing 54/667 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,813 DEBUG Processing 726/729 atomic regions from SNP 217534 to 218134 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,866 DEBUG Processing 338/680 atomic regions from SNP 101282 to 101882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,905 DEBUG Processing 438/721 atomic regions from SNP 131250 to 131850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,913 DEBUG Processing 55/667 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,044 DEBUG Processing 727/729 atomic regions from SNP 217834 to 218434 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,094 DEBUG Processing 339/680 atomic regions from SNP 101582 to 102182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,130 DEBUG Processing 56/667 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,146 DEBUG Processing 439/721 atomic regions from SNP 131550 to 132150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,277 DEBUG Processing 728/729 atomic regions from SNP 218134 to 218734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,327 DEBUG Processing 340/680 atomic regions from SNP 101882 to 102482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,349 DEBUG Processing 57/667 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,384 DEBUG Processing 440/721 atomic regions from SNP 131850 to 132450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,513 DEBUG Processing 729/729 atomic regions from SNP 218434 to 219034 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,549 DEBUG Processing 341/680 atomic regions from SNP 102182 to 102782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,570 DEBUG Processing 58/667 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,617 DEBUG Processing 441/721 atomic regions from SNP 132150 to 132750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,681 DEBUG Unique SNPs positions in subchromosome 1: 219035 2025-01-31 09:55:50,785 DEBUG Processing 342/680 atomic regions from SNP 102482 to 103082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,805 DEBUG Processing 59/667 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,852 DEBUG Processing 442/721 atomic regions from SNP 132450 to 133050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,011 DEBUG Processing 343/680 atomic regions from SNP 102782 to 103382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,024 DEBUG Processing 60/667 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,081 DEBUG Processing 443/721 atomic regions from SNP 132750 to 133350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,232 DEBUG Processing 344/680 atomic regions from SNP 103082 to 103682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,242 DEBUG Processing 61/667 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,300 DEBUG Processing 444/721 atomic regions from SNP 133050 to 133650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,452 DEBUG Processing 345/680 atomic regions from SNP 103382 to 103982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,460 DEBUG Processing 62/667 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,536 DEBUG Processing 445/721 atomic regions from SNP 133350 to 133950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,675 DEBUG Processing 346/680 atomic regions from SNP 103682 to 104282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,682 DEBUG Processing 63/667 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,792 DEBUG Processing 446/721 atomic regions from SNP 133650 to 134250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,899 DEBUG Processing 347/680 atomic regions from SNP 103982 to 104582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,902 DEBUG Processing 64/667 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,035 DEBUG Processing 447/721 atomic regions from SNP 133950 to 134550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,121 DEBUG Processing 65/667 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,122 DEBUG Processing 348/680 atomic regions from SNP 104282 to 104882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,288 DEBUG Processing 448/721 atomic regions from SNP 134250 to 134850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,340 DEBUG Processing 66/667 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,346 DEBUG Processing 349/680 atomic regions from SNP 104582 to 105182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,549 DEBUG Processing 449/721 atomic regions from SNP 134550 to 135150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,560 DEBUG Processing 67/667 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,564 DEBUG Processing 350/680 atomic regions from SNP 104882 to 105482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,780 DEBUG Processing 68/667 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,791 DEBUG Processing 351/680 atomic regions from SNP 105182 to 105782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,809 DEBUG Processing 450/721 atomic regions from SNP 134850 to 135450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,999 DEBUG Processing 69/667 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,035 DEBUG Processing 352/680 atomic regions from SNP 105482 to 106082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,065 DEBUG Processing 451/721 atomic regions from SNP 135150 to 135750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,209 DEBUG Processing 70/667 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,270 DEBUG Processing 353/680 atomic regions from SNP 105782 to 106382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,312 DEBUG Processing 452/721 atomic regions from SNP 135450 to 136050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,412 DEBUG Processing 71/667 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,503 DEBUG Processing 354/680 atomic regions from SNP 106082 to 106682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,544 DEBUG Processing 453/721 atomic regions from SNP 135750 to 136350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,614 DEBUG Processing 72/667 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,741 DEBUG Processing 355/680 atomic regions from SNP 106382 to 106982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,765 DEBUG Processing 454/721 atomic regions from SNP 136050 to 136650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,816 DEBUG Processing 73/667 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,977 DEBUG Processing 356/680 atomic regions from SNP 106682 to 107282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,998 DEBUG Processing 455/721 atomic regions from SNP 136350 to 136950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,032 DEBUG Processing 74/667 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,213 DEBUG Processing 357/680 atomic regions from SNP 106982 to 107582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,233 DEBUG Processing 456/721 atomic regions from SNP 136650 to 137250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,239 DEBUG Processing 75/667 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,447 DEBUG Processing 358/680 atomic regions from SNP 107282 to 107882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,451 DEBUG Processing 76/667 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,457 DEBUG Processing 457/721 atomic regions from SNP 136950 to 137550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,665 DEBUG Processing 77/667 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,677 DEBUG Processing 458/721 atomic regions from SNP 137250 to 137850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,688 DEBUG Processing 359/680 atomic regions from SNP 107582 to 108182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,870 DEBUG Processing 78/667 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,904 DEBUG Processing 459/721 atomic regions from SNP 137550 to 138150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,924 DEBUG Processing 360/680 atomic regions from SNP 107882 to 108482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,076 DEBUG Processing 79/667 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,150 DEBUG Processing 361/680 atomic regions from SNP 108182 to 108782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,151 DEBUG Processing 460/721 atomic regions from SNP 137850 to 138450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,282 DEBUG Processing 80/667 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,362 DEBUG Processing 362/680 atomic regions from SNP 108482 to 109082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,380 DEBUG Processing 461/721 atomic regions from SNP 138150 to 138750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,486 DEBUG Processing 81/667 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,582 DEBUG Processing 363/680 atomic regions from SNP 108782 to 109382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,627 DEBUG Processing 462/721 atomic regions from SNP 138450 to 139050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,707 DEBUG Processing 82/667 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,805 DEBUG Processing 364/680 atomic regions from SNP 109082 to 109682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,870 DEBUG Processing 463/721 atomic regions from SNP 138750 to 139350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,939 DEBUG Processing 83/667 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,041 DEBUG Processing 365/680 atomic regions from SNP 109382 to 109982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,063 DEBUG Subchromosome time: 209.3805057540303, subchromosome SNPs: 219035 2025-01-31 09:55:56,063 DEBUG Estimated BADs: [1.02, 4.10, 0.68, 8.19, 2.05, 1.02, 2.05, 0.68, 20.48, 2.05, 4.10, 2.05, 4.10, 2.05, 1.02, 0.51, 2.05, 6.14, 4.10, 2.05, 4.10] SNP counts: [17272, 3868, 8414, 3473, 6102, 9901, 11998, 5081, 116, 4558, 4956, 16207, 23456, 25730, 15904, 5685, 23003, 5207, 4009, 14836, 9259] SNP IDs counts: [17272, 3868, 8414, 3473, 6102, 9901, 11998, 5081, 116, 4558, 4956, 16207, 23456, 25730, 15904, 5685, 23003, 5207, 4009, 14836, 9259] Critical gap: 596267bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.29Mbp, 15.46Mbp, 20.48Mbp, 22.31Mbp, 25.72Mbp, 31.12Mbp, 37.80Mbp, 40.76Mbp, 40.82Mbp, 43.20Mbp, 45.78Mbp, 54.50Mbp, 66.88Mbp, 80.95Mbp, 90.45Mbp, 93.76Mbp, 106.15Mbp, 108.97Mbp, 111.24Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:55:56,063 DEBUG chr9 time: 209.38104481098708 s 2025-01-31 09:55:56,096 DEBUG Processing 464/721 atomic regions from SNP 139050 to 139650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,144 DEBUG Processing 84/667 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,209 DEBUG chr9: Fitting background model for 21 segments 2025-01-31 09:55:56,255 DEBUG Processing 366/680 atomic regions from SNP 109682 to 110282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,324 DEBUG Processing 465/721 atomic regions from SNP 139350 to 139950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,354 DEBUG Processing 85/667 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,471 DEBUG Processing 367/680 atomic regions from SNP 109982 to 110582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,556 DEBUG Processing 466/721 atomic regions from SNP 139650 to 140250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,572 DEBUG Processing 86/667 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,685 DEBUG Processing 368/680 atomic regions from SNP 110282 to 110882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,784 DEBUG Processing 467/721 atomic regions from SNP 139950 to 140550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,817 DEBUG Processing 87/667 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,898 DEBUG Processing 369/680 atomic regions from SNP 110582 to 111182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,013 DEBUG Processing 468/721 atomic regions from SNP 140250 to 140850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,053 DEBUG Processing 88/667 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,106 DEBUG Processing 370/680 atomic regions from SNP 110882 to 111482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,240 DEBUG Processing 469/721 atomic regions from SNP 140550 to 141150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,270 DEBUG Processing 89/667 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,326 DEBUG Processing 371/680 atomic regions from SNP 111182 to 111782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,472 DEBUG Processing 470/721 atomic regions from SNP 140850 to 141450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,478 DEBUG Segmenting atomic regions: 2025-01-31 09:55:57,487 DEBUG Processing 90/667 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,541 DEBUG Processing 372/680 atomic regions from SNP 111482 to 112082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,559 DEBUG Processing 1/601 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,701 DEBUG Processing 471/721 atomic regions from SNP 141150 to 141750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,706 DEBUG Processing 91/667 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,764 DEBUG Processing 373/680 atomic regions from SNP 111782 to 112382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,773 DEBUG Processing 2/601 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,924 DEBUG Processing 92/667 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,933 DEBUG Processing 472/721 atomic regions from SNP 141450 to 142050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,987 DEBUG Processing 3/601 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,987 DEBUG Processing 374/680 atomic regions from SNP 112082 to 112682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,150 DEBUG Processing 93/667 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,167 DEBUG Processing 473/721 atomic regions from SNP 141750 to 142350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,200 DEBUG Processing 4/601 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,209 DEBUG Processing 375/680 atomic regions from SNP 112382 to 112982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,374 DEBUG Processing 94/667 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,399 DEBUG Processing 474/721 atomic regions from SNP 142050 to 142650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,417 DEBUG Processing 5/601 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,433 DEBUG Processing 376/680 atomic regions from SNP 112682 to 113282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,602 DEBUG Processing 95/667 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,634 DEBUG Processing 475/721 atomic regions from SNP 142350 to 142950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,656 DEBUG Processing 377/680 atomic regions from SNP 112982 to 113582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,665 DEBUG Processing 6/601 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,829 DEBUG Processing 96/667 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,869 DEBUG Processing 476/721 atomic regions from SNP 142650 to 143250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,881 DEBUG Processing 378/680 atomic regions from SNP 113282 to 113882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,883 DEBUG Processing 7/601 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,059 DEBUG Processing 97/667 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,105 DEBUG Processing 8/601 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,107 DEBUG Processing 477/721 atomic regions from SNP 142950 to 143550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,111 DEBUG Processing 379/680 atomic regions from SNP 113582 to 114182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,287 DEBUG Processing 98/667 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,323 DEBUG Processing 9/601 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,343 DEBUG Processing 478/721 atomic regions from SNP 143250 to 143850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,370 DEBUG Processing 380/680 atomic regions from SNP 113882 to 114482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,380 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:55:59,382 DEBUG chr16: Signal quantile: 0.994. signal threshold: 19. Best RMSEA: 0.020 2025-01-31 09:55:59,530 DEBUG Processing 99/667 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,544 DEBUG Processing 10/601 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,601 DEBUG Processing 479/721 atomic regions from SNP 143550 to 144150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,627 DEBUG Processing 381/680 atomic regions from SNP 114182 to 114782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,760 DEBUG Processing 100/667 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,767 DEBUG Processing 11/601 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,862 DEBUG Processing 480/721 atomic regions from SNP 143850 to 144450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,867 DEBUG Processing 382/680 atomic regions from SNP 114482 to 115082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,985 DEBUG Processing 101/667 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,005 DEBUG Processing 12/601 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,091 DEBUG Processing 383/680 atomic regions from SNP 114782 to 115382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,105 DEBUG Processing 481/721 atomic regions from SNP 144150 to 144750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,204 DEBUG Processing 102/667 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,254 DEBUG Processing 13/601 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,317 DEBUG Processing 384/680 atomic regions from SNP 115082 to 115682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,362 DEBUG Processing 482/721 atomic regions from SNP 144450 to 145050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,452 DEBUG Processing 103/667 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,499 DEBUG Processing 14/601 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,548 DEBUG Processing 385/680 atomic regions from SNP 115382 to 115982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,610 DEBUG Processing 483/721 atomic regions from SNP 144750 to 145350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,716 DEBUG Processing 104/667 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,733 DEBUG Processing 15/601 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,769 DEBUG Processing 386/680 atomic regions from SNP 115682 to 116282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,848 DEBUG Processing 484/721 atomic regions from SNP 145050 to 145650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,959 DEBUG Processing 105/667 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,967 DEBUG Processing 16/601 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,989 DEBUG Processing 387/680 atomic regions from SNP 115982 to 116582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,082 DEBUG Processing 485/721 atomic regions from SNP 145350 to 145950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,199 DEBUG Processing 106/667 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,201 DEBUG Processing 17/601 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,229 DEBUG Processing 388/680 atomic regions from SNP 116282 to 116882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,308 DEBUG chr16 total SNP count: 169673 2025-01-31 09:56:01,308 DEBUG chr16 length: 98207768 2025-01-31 09:56:01,308 DEBUG ----------------------------------------- 2025-01-31 09:56:01,308 INFO Processing SNPs in chr16 2025-01-31 09:56:01,322 DEBUG Processing 486/721 atomic regions from SNP 145650 to 146250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,438 DEBUG Processing 107/667 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,441 DEBUG Processing 18/601 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,450 DEBUG Processing 389/680 atomic regions from SNP 116582 to 117182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,482 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 169673)] 2025-01-31 09:56:01,566 DEBUG Processing 487/721 atomic regions from SNP 145950 to 146550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,600 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:01,655 DEBUG Processing 108/667 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,673 DEBUG Processing 390/680 atomic regions from SNP 116882 to 117482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,673 DEBUG Processing 19/601 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,801 DEBUG Processing 488/721 atomic regions from SNP 146250 to 146850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,874 DEBUG Processing 109/667 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,894 DEBUG Processing 391/680 atomic regions from SNP 117182 to 117782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,904 DEBUG Processing 20/601 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,033 DEBUG Processing 489/721 atomic regions from SNP 146550 to 147150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,099 DEBUG Processing 110/667 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,120 DEBUG Processing 392/680 atomic regions from SNP 117482 to 118082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,156 DEBUG Processing 21/601 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,283 DEBUG Processing 490/721 atomic regions from SNP 146850 to 147450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,326 DEBUG Processing 111/667 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,348 DEBUG Processing 393/680 atomic regions from SNP 117782 to 118382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,410 DEBUG Processing 22/601 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,540 DEBUG Processing 112/667 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,548 DEBUG Processing 491/721 atomic regions from SNP 147150 to 147750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,570 DEBUG Processing 394/680 atomic regions from SNP 118082 to 118682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,659 DEBUG Processing 23/601 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,758 DEBUG Processing 113/667 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,793 DEBUG Processing 395/680 atomic regions from SNP 118382 to 118982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,809 DEBUG Processing 492/721 atomic regions from SNP 147450 to 148050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,905 DEBUG Processing 24/601 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,978 DEBUG Processing 114/667 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,020 DEBUG Processing 396/680 atomic regions from SNP 118682 to 119282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,047 DEBUG Processing 493/721 atomic regions from SNP 147750 to 148350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,166 DEBUG Processing 25/601 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,195 DEBUG Processing 115/667 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,264 DEBUG Processing 397/680 atomic regions from SNP 118982 to 119582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,297 DEBUG Processing 494/721 atomic regions from SNP 148050 to 148650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,401 DEBUG Processing 26/601 atomic regions from SNP 7525 to 8125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,412 DEBUG Processing 116/667 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,507 DEBUG Processing 398/680 atomic regions from SNP 119282 to 119882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,546 DEBUG Processing 495/721 atomic regions from SNP 148350 to 148950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,630 DEBUG Processing 117/667 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,637 DEBUG Processing 27/601 atomic regions from SNP 7825 to 8425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,731 DEBUG Processing 399/680 atomic regions from SNP 119582 to 120182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,773 DEBUG Processing 496/721 atomic regions from SNP 148650 to 149250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,853 DEBUG Processing 118/667 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,877 DEBUG Processing 28/601 atomic regions from SNP 8125 to 8725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,953 DEBUG Processing 400/680 atomic regions from SNP 119882 to 120482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,024 DEBUG Processing 497/721 atomic regions from SNP 148950 to 149550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,085 DEBUG Processing 119/667 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,138 DEBUG Processing 29/601 atomic regions from SNP 8425 to 9025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,183 DEBUG Processing 401/680 atomic regions from SNP 120182 to 120782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,292 DEBUG Processing 498/721 atomic regions from SNP 149250 to 149850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,317 DEBUG Processing 120/667 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,390 DEBUG Processing 30/601 atomic regions from SNP 8725 to 9325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,408 DEBUG Processing 402/680 atomic regions from SNP 120482 to 121082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,528 DEBUG Processing 499/721 atomic regions from SNP 149550 to 150150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,545 DEBUG Processing 121/667 atomic regions from SNP 36120 to 36721 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,645 DEBUG Processing 31/601 atomic regions from SNP 9025 to 9625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,656 DEBUG Processing 403/680 atomic regions from SNP 120782 to 121382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,763 DEBUG Processing 500/721 atomic regions from SNP 149850 to 150450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,771 DEBUG Processing 122/667 atomic regions from SNP 36421 to 37022 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,894 DEBUG Processing 32/601 atomic regions from SNP 9325 to 9925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,913 DEBUG Processing 404/680 atomic regions from SNP 121082 to 121682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,999 DEBUG Processing 501/721 atomic regions from SNP 150150 to 150750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,011 DEBUG Processing 123/667 atomic regions from SNP 36722 to 37323 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,143 DEBUG Processing 33/601 atomic regions from SNP 9625 to 10225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,164 DEBUG Processing 405/680 atomic regions from SNP 121382 to 121982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,236 DEBUG Processing 124/667 atomic regions from SNP 37023 to 37624 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,243 DEBUG Processing 502/721 atomic regions from SNP 150450 to 151050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,387 DEBUG Processing 34/601 atomic regions from SNP 9925 to 10525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,409 DEBUG Processing 406/680 atomic regions from SNP 121682 to 122282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,455 DEBUG Processing 125/667 atomic regions from SNP 37324 to 37925 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,488 DEBUG Processing 503/721 atomic regions from SNP 150750 to 151350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,629 DEBUG Processing 35/601 atomic regions from SNP 10225 to 10825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,654 DEBUG Processing 407/680 atomic regions from SNP 121982 to 122582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,671 DEBUG Processing 126/667 atomic regions from SNP 37625 to 38226 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,725 DEBUG Processing 504/721 atomic regions from SNP 151050 to 151650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,862 DEBUG Processing 36/601 atomic regions from SNP 10525 to 11125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,887 DEBUG Processing 127/667 atomic regions from SNP 37926 to 38527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,897 DEBUG Processing 408/680 atomic regions from SNP 122282 to 122882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,969 DEBUG Processing 505/721 atomic regions from SNP 151350 to 151950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,100 DEBUG Processing 37/601 atomic regions from SNP 10825 to 11425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,117 DEBUG Processing 128/667 atomic regions from SNP 38227 to 38828 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,132 DEBUG Processing 409/680 atomic regions from SNP 122582 to 123182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,204 DEBUG Processing 506/721 atomic regions from SNP 151650 to 152250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,343 DEBUG Processing 38/601 atomic regions from SNP 11125 to 11725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,360 DEBUG Processing 129/667 atomic regions from SNP 38528 to 39129 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,363 DEBUG Processing 410/680 atomic regions from SNP 122882 to 123482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,451 DEBUG Processing 507/721 atomic regions from SNP 151950 to 152550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,595 DEBUG Processing 411/680 atomic regions from SNP 123182 to 123782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,595 DEBUG Processing 39/601 atomic regions from SNP 11425 to 12025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,599 DEBUG Processing 130/667 atomic regions from SNP 38829 to 39430 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,718 DEBUG Processing 508/721 atomic regions from SNP 152250 to 152850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,818 DEBUG Processing 131/667 atomic regions from SNP 39130 to 39731 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,831 DEBUG Processing 40/601 atomic regions from SNP 11725 to 12325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,835 DEBUG Processing 412/680 atomic regions from SNP 123482 to 124082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,968 DEBUG Processing 509/721 atomic regions from SNP 152550 to 153150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,036 DEBUG Processing 132/667 atomic regions from SNP 39431 to 40032 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,054 DEBUG Processing 41/601 atomic regions from SNP 12025 to 12625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,059 DEBUG Processing 413/680 atomic regions from SNP 123782 to 124382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,223 DEBUG Processing 510/721 atomic regions from SNP 152850 to 153450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,255 DEBUG Processing 133/667 atomic regions from SNP 39732 to 40333 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,282 DEBUG Processing 414/680 atomic regions from SNP 124082 to 124682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,285 DEBUG Processing 42/601 atomic regions from SNP 12325 to 12925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,468 DEBUG Processing 511/721 atomic regions from SNP 153150 to 153750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,483 DEBUG Processing 134/667 atomic regions from SNP 40033 to 40634 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,513 DEBUG Processing 415/680 atomic regions from SNP 124382 to 124982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,520 DEBUG Processing 43/601 atomic regions from SNP 12625 to 13225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,708 DEBUG Processing 135/667 atomic regions from SNP 40334 to 40935 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,726 DEBUG Processing 512/721 atomic regions from SNP 153450 to 154050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,747 DEBUG Processing 416/680 atomic regions from SNP 124682 to 125282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,777 DEBUG Processing 44/601 atomic regions from SNP 12925 to 13525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,932 DEBUG Processing 136/667 atomic regions from SNP 40635 to 41236 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,976 DEBUG Processing 417/680 atomic regions from SNP 124982 to 125582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,981 DEBUG Processing 513/721 atomic regions from SNP 153750 to 154350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,030 DEBUG Processing 45/601 atomic regions from SNP 13225 to 13825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,151 DEBUG Processing 137/667 atomic regions from SNP 40936 to 41537 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,220 DEBUG Processing 418/680 atomic regions from SNP 125282 to 125882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,225 DEBUG Processing 514/721 atomic regions from SNP 154050 to 154650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,279 DEBUG Processing 46/601 atomic regions from SNP 13525 to 14125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,374 DEBUG Processing 138/667 atomic regions from SNP 41237 to 41838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,454 DEBUG Processing 419/680 atomic regions from SNP 125582 to 126182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,459 DEBUG Processing 515/721 atomic regions from SNP 154350 to 154950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,529 DEBUG Processing 47/601 atomic regions from SNP 13825 to 14425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,594 DEBUG Processing 139/667 atomic regions from SNP 41538 to 42139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,677 DEBUG Processing 420/680 atomic regions from SNP 125882 to 126482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,694 DEBUG Processing 516/721 atomic regions from SNP 154650 to 155250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,774 DEBUG Processing 48/601 atomic regions from SNP 14125 to 14725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,812 DEBUG Processing 140/667 atomic regions from SNP 41839 to 42440 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,898 DEBUG Processing 421/680 atomic regions from SNP 126182 to 126782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,936 DEBUG Processing 517/721 atomic regions from SNP 154950 to 155550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,019 DEBUG Processing 49/601 atomic regions from SNP 14425 to 15025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,031 DEBUG Processing 141/667 atomic regions from SNP 42140 to 42741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,122 DEBUG Processing 422/680 atomic regions from SNP 126482 to 127082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,183 DEBUG Processing 518/721 atomic regions from SNP 155250 to 155850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,245 DEBUG Processing 142/667 atomic regions from SNP 42441 to 43042 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,255 DEBUG Processing 50/601 atomic regions from SNP 14725 to 15325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,342 DEBUG Processing 423/680 atomic regions from SNP 126782 to 127382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,413 DEBUG Processing 519/721 atomic regions from SNP 155550 to 156150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,467 DEBUG Processing 143/667 atomic regions from SNP 42742 to 43343 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,482 DEBUG Processing 51/601 atomic regions from SNP 15025 to 15625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,564 DEBUG Processing 424/680 atomic regions from SNP 127082 to 127682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,644 DEBUG Processing 520/721 atomic regions from SNP 155850 to 156450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,691 DEBUG Processing 144/667 atomic regions from SNP 43043 to 43644 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,715 DEBUG Processing 52/601 atomic regions from SNP 15325 to 15925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,788 DEBUG Processing 425/680 atomic regions from SNP 127382 to 127982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,884 DEBUG Processing 521/721 atomic regions from SNP 156150 to 156750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,922 DEBUG Processing 145/667 atomic regions from SNP 43344 to 43945 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,961 DEBUG Processing 53/601 atomic regions from SNP 15625 to 16225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,002 DEBUG Processing 426/680 atomic regions from SNP 127682 to 128282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,108 DEBUG Processing 522/721 atomic regions from SNP 156450 to 157050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,161 DEBUG Processing 146/667 atomic regions from SNP 43645 to 44246 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,215 DEBUG Processing 54/601 atomic regions from SNP 15925 to 16525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,226 DEBUG Processing 427/680 atomic regions from SNP 127982 to 128582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,332 DEBUG Processing 523/721 atomic regions from SNP 156750 to 157350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,384 DEBUG Processing 147/667 atomic regions from SNP 43946 to 44547 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,453 DEBUG Processing 428/680 atomic regions from SNP 128282 to 128882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,467 DEBUG Processing 55/601 atomic regions from SNP 16225 to 16825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,559 DEBUG Processing 524/721 atomic regions from SNP 157050 to 157650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,613 DEBUG Processing 148/667 atomic regions from SNP 44247 to 44848 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,683 DEBUG Processing 429/680 atomic regions from SNP 128582 to 129182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,728 DEBUG Processing 56/601 atomic regions from SNP 16525 to 17125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,786 DEBUG Processing 525/721 atomic regions from SNP 157350 to 157950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,866 DEBUG Processing 149/667 atomic regions from SNP 44548 to 45149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,919 DEBUG Processing 430/680 atomic regions from SNP 128882 to 129482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,993 DEBUG Processing 57/601 atomic regions from SNP 16825 to 17425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,020 DEBUG Processing 526/721 atomic regions from SNP 157650 to 158250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,114 DEBUG Processing 150/667 atomic regions from SNP 44849 to 45450 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,145 DEBUG Processing 431/680 atomic regions from SNP 129182 to 129782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,249 DEBUG Processing 527/721 atomic regions from SNP 157950 to 158550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,249 DEBUG Processing 58/601 atomic regions from SNP 17125 to 17725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,354 DEBUG Processing 151/667 atomic regions from SNP 45150 to 45751 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,409 DEBUG Processing 432/680 atomic regions from SNP 129482 to 130082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,475 DEBUG Processing 528/721 atomic regions from SNP 158250 to 158850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,498 DEBUG Processing 59/601 atomic regions from SNP 17425 to 18025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,577 DEBUG Processing 152/667 atomic regions from SNP 45451 to 46052 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,651 DEBUG Processing 433/680 atomic regions from SNP 129782 to 130382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,702 DEBUG Processing 529/721 atomic regions from SNP 158550 to 159150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,739 DEBUG Processing 60/601 atomic regions from SNP 17725 to 18325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,799 DEBUG Processing 153/667 atomic regions from SNP 45752 to 46353 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,876 DEBUG Processing 434/680 atomic regions from SNP 130082 to 130682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,932 DEBUG Processing 530/721 atomic regions from SNP 158850 to 159450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,974 DEBUG Processing 61/601 atomic regions from SNP 18025 to 18625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,024 DEBUG Processing 154/667 atomic regions from SNP 46053 to 46654 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,100 DEBUG Processing 435/680 atomic regions from SNP 130382 to 130982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,166 DEBUG Processing 531/721 atomic regions from SNP 159150 to 159750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,208 DEBUG Processing 62/601 atomic regions from SNP 18325 to 18925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,250 DEBUG Processing 155/667 atomic regions from SNP 46354 to 46955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,321 DEBUG Processing 436/680 atomic regions from SNP 130682 to 131282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,399 DEBUG Processing 532/721 atomic regions from SNP 159450 to 160050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,429 DEBUG Processing 63/601 atomic regions from SNP 18625 to 19225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,483 DEBUG Processing 156/667 atomic regions from SNP 46655 to 47256 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,540 DEBUG Processing 437/680 atomic regions from SNP 130982 to 131582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,634 DEBUG Processing 533/721 atomic regions from SNP 159750 to 160350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,649 DEBUG Processing 64/601 atomic regions from SNP 18925 to 19525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,727 DEBUG Processing 157/667 atomic regions from SNP 46956 to 47557 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,756 DEBUG Processing 438/680 atomic regions from SNP 131282 to 131882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,866 DEBUG Processing 65/601 atomic regions from SNP 19225 to 19825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,869 DEBUG Processing 534/721 atomic regions from SNP 160050 to 160650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,968 DEBUG Processing 158/667 atomic regions from SNP 47257 to 47858 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,984 DEBUG Processing 439/680 atomic regions from SNP 131582 to 132182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,077 DEBUG Processing 66/601 atomic regions from SNP 19525 to 20125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,097 DEBUG Processing 535/721 atomic regions from SNP 160350 to 160950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,192 DEBUG Processing 159/667 atomic regions from SNP 47558 to 48159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,212 DEBUG Processing 440/680 atomic regions from SNP 131882 to 132482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,290 DEBUG Processing 67/601 atomic regions from SNP 19825 to 20425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,324 DEBUG Processing 536/721 atomic regions from SNP 160650 to 161250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,419 DEBUG Processing 160/667 atomic regions from SNP 47859 to 48460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,443 DEBUG Processing 441/680 atomic regions from SNP 132182 to 132782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,505 DEBUG Processing 68/601 atomic regions from SNP 20125 to 20725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,551 DEBUG Processing 537/721 atomic regions from SNP 160950 to 161550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,644 DEBUG Processing 161/667 atomic regions from SNP 48160 to 48761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,677 DEBUG Processing 442/680 atomic regions from SNP 132482 to 133082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,726 DEBUG Processing 69/601 atomic regions from SNP 20425 to 21025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,778 DEBUG Processing 538/721 atomic regions from SNP 161250 to 161850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,866 DEBUG Processing 162/667 atomic regions from SNP 48461 to 49062 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,907 DEBUG Processing 443/680 atomic regions from SNP 132782 to 133382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,960 DEBUG Processing 70/601 atomic regions from SNP 20725 to 21325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,009 DEBUG Processing 539/721 atomic regions from SNP 161550 to 162150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,084 DEBUG Processing 163/667 atomic regions from SNP 48762 to 49363 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,129 DEBUG Processing 444/680 atomic regions from SNP 133082 to 133682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,172 DEBUG Processing 71/601 atomic regions from SNP 21025 to 21625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,236 DEBUG Processing 540/721 atomic regions from SNP 161850 to 162450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,304 DEBUG Processing 164/667 atomic regions from SNP 49063 to 49664 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,351 DEBUG Processing 445/680 atomic regions from SNP 133382 to 133982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,383 DEBUG Processing 72/601 atomic regions from SNP 21325 to 21925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,459 DEBUG Processing 541/721 atomic regions from SNP 162150 to 162750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,521 DEBUG Processing 165/667 atomic regions from SNP 49364 to 49965 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,578 DEBUG Processing 446/680 atomic regions from SNP 133682 to 134282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,594 DEBUG Processing 73/601 atomic regions from SNP 21625 to 22225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,685 DEBUG Processing 542/721 atomic regions from SNP 162450 to 163050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,739 DEBUG Processing 166/667 atomic regions from SNP 49665 to 50266 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,809 DEBUG Processing 74/601 atomic regions from SNP 21925 to 22525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,814 DEBUG Processing 447/680 atomic regions from SNP 133982 to 134582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,916 DEBUG Processing 543/721 atomic regions from SNP 162750 to 163350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,956 DEBUG Processing 167/667 atomic regions from SNP 49966 to 50567 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,025 DEBUG Processing 75/601 atomic regions from SNP 22225 to 22825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,064 DEBUG Processing 448/680 atomic regions from SNP 134282 to 134882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,143 DEBUG Processing 544/721 atomic regions from SNP 163050 to 163650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,170 DEBUG Processing 168/667 atomic regions from SNP 50267 to 50868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,235 DEBUG Processing 76/601 atomic regions from SNP 22525 to 23125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,288 DEBUG Processing 449/680 atomic regions from SNP 134582 to 135182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,371 DEBUG Processing 545/721 atomic regions from SNP 163350 to 163950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,385 DEBUG Processing 169/667 atomic regions from SNP 50568 to 51169 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,450 DEBUG Processing 77/601 atomic regions from SNP 22825 to 23425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,521 DEBUG Processing 450/680 atomic regions from SNP 134882 to 135482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,605 DEBUG Processing 546/721 atomic regions from SNP 163650 to 164250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,609 DEBUG Processing 170/667 atomic regions from SNP 50869 to 51470 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,661 DEBUG Processing 78/601 atomic regions from SNP 23125 to 23725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,755 DEBUG Processing 451/680 atomic regions from SNP 135182 to 135782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,831 DEBUG Processing 171/667 atomic regions from SNP 51170 to 51771 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,837 DEBUG Processing 547/721 atomic regions from SNP 163950 to 164550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,879 DEBUG Processing 79/601 atomic regions from SNP 23425 to 24025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,018 DEBUG Processing 452/680 atomic regions from SNP 135482 to 136082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,058 DEBUG Processing 172/667 atomic regions from SNP 51471 to 52072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,078 DEBUG Processing 548/721 atomic regions from SNP 164250 to 164850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,096 DEBUG Processing 80/601 atomic regions from SNP 23725 to 24325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,293 DEBUG Processing 453/680 atomic regions from SNP 135782 to 136382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,299 DEBUG Processing 173/667 atomic regions from SNP 51772 to 52373 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,314 DEBUG Processing 81/601 atomic regions from SNP 24025 to 24625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,351 DEBUG Processing 549/721 atomic regions from SNP 164550 to 165150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,519 DEBUG Processing 174/667 atomic regions from SNP 52073 to 52674 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,524 DEBUG Processing 82/601 atomic regions from SNP 24325 to 24925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,530 DEBUG Processing 454/680 atomic regions from SNP 136082 to 136682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,604 DEBUG Processing 550/721 atomic regions from SNP 164850 to 165450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,733 DEBUG Processing 83/601 atomic regions from SNP 24625 to 25225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,738 DEBUG Processing 175/667 atomic regions from SNP 52374 to 52975 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,751 DEBUG Processing 455/680 atomic regions from SNP 136382 to 136982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,839 DEBUG Processing 551/721 atomic regions from SNP 165150 to 165750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,954 DEBUG Processing 84/601 atomic regions from SNP 24925 to 25525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,961 DEBUG Processing 176/667 atomic regions from SNP 52675 to 53276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,975 DEBUG Processing 456/680 atomic regions from SNP 136682 to 137282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,081 DEBUG Processing 552/721 atomic regions from SNP 165450 to 166050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,170 DEBUG Processing 85/601 atomic regions from SNP 25225 to 25825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,184 DEBUG Processing 177/667 atomic regions from SNP 52976 to 53577 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,199 DEBUG Processing 457/680 atomic regions from SNP 136982 to 137582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,303 DEBUG Processing 553/721 atomic regions from SNP 165750 to 166350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,385 DEBUG Processing 86/601 atomic regions from SNP 25525 to 26125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,409 DEBUG Processing 178/667 atomic regions from SNP 53277 to 53878 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,423 DEBUG Processing 458/680 atomic regions from SNP 137282 to 137882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,553 DEBUG Processing 554/721 atomic regions from SNP 166050 to 166650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,595 DEBUG Processing 87/601 atomic regions from SNP 25825 to 26425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,626 DEBUG Processing 179/667 atomic regions from SNP 53578 to 54179 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,644 DEBUG Processing 459/680 atomic regions from SNP 137582 to 138182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,792 DEBUG Processing 555/721 atomic regions from SNP 166350 to 166950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,801 DEBUG Processing 88/601 atomic regions from SNP 26125 to 26725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,842 DEBUG Processing 180/667 atomic regions from SNP 53879 to 54480 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,865 DEBUG Processing 460/680 atomic regions from SNP 137882 to 138482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,017 DEBUG Processing 89/601 atomic regions from SNP 26425 to 27025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,045 DEBUG Processing 556/721 atomic regions from SNP 166650 to 167250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,066 DEBUG Processing 181/667 atomic regions from SNP 54180 to 54781 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,086 DEBUG Processing 461/680 atomic regions from SNP 138182 to 138782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,223 DEBUG Processing 90/601 atomic regions from SNP 26725 to 27325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,284 DEBUG Processing 182/667 atomic regions from SNP 54481 to 55082 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,290 DEBUG Processing 557/721 atomic regions from SNP 166950 to 167550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,307 DEBUG Processing 462/680 atomic regions from SNP 138482 to 139082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,424 DEBUG Processing 91/601 atomic regions from SNP 27025 to 27625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,503 DEBUG Processing 183/667 atomic regions from SNP 54782 to 55383 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,534 DEBUG Processing 463/680 atomic regions from SNP 138782 to 139382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,539 DEBUG Processing 558/721 atomic regions from SNP 167250 to 167850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,629 DEBUG Processing 92/601 atomic regions from SNP 27325 to 27925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,722 DEBUG Processing 184/667 atomic regions from SNP 55083 to 55684 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,765 DEBUG Processing 464/680 atomic regions from SNP 139082 to 139682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,795 DEBUG Processing 559/721 atomic regions from SNP 167550 to 168150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,838 DEBUG Processing 93/601 atomic regions from SNP 27625 to 28225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,938 DEBUG Processing 185/667 atomic regions from SNP 55384 to 55985 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,010 DEBUG Processing 465/680 atomic regions from SNP 139382 to 139982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,050 DEBUG Processing 560/721 atomic regions from SNP 167850 to 168450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,050 DEBUG Processing 94/601 atomic regions from SNP 27925 to 28525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,147 DEBUG Processing 186/667 atomic regions from SNP 55685 to 56286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,230 DEBUG Processing 466/680 atomic regions from SNP 139682 to 140282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,262 DEBUG Processing 95/601 atomic regions from SNP 28225 to 28825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,299 DEBUG Processing 561/721 atomic regions from SNP 168150 to 168750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,363 DEBUG Processing 187/667 atomic regions from SNP 55986 to 56587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,445 DEBUG Processing 467/680 atomic regions from SNP 139982 to 140582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,467 DEBUG Processing 96/601 atomic regions from SNP 28525 to 29125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,531 DEBUG Processing 562/721 atomic regions from SNP 168450 to 169050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,579 DEBUG Processing 188/667 atomic regions from SNP 56287 to 56888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,659 DEBUG Processing 468/680 atomic regions from SNP 140282 to 140882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,670 DEBUG Processing 97/601 atomic regions from SNP 28825 to 29425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,761 DEBUG Processing 563/721 atomic regions from SNP 168750 to 169350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,801 DEBUG Processing 189/667 atomic regions from SNP 56588 to 57189 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,872 DEBUG Processing 98/601 atomic regions from SNP 29125 to 29725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,873 DEBUG Processing 469/680 atomic regions from SNP 140582 to 141182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,989 DEBUG Processing 564/721 atomic regions from SNP 169050 to 169650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,021 DEBUG Processing 190/667 atomic regions from SNP 56889 to 57490 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,080 DEBUG Processing 99/601 atomic regions from SNP 29425 to 30025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,091 DEBUG Processing 470/680 atomic regions from SNP 140882 to 141482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,225 DEBUG Processing 565/721 atomic regions from SNP 169350 to 169950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,247 DEBUG Processing 191/667 atomic regions from SNP 57190 to 57791 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,291 DEBUG Processing 100/601 atomic regions from SNP 29725 to 30325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,313 DEBUG Processing 471/680 atomic regions from SNP 141182 to 141782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,471 DEBUG Processing 192/667 atomic regions from SNP 57491 to 58092 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,486 DEBUG Processing 566/721 atomic regions from SNP 169650 to 170250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,504 DEBUG Processing 101/601 atomic regions from SNP 30025 to 30625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,535 DEBUG Processing 472/680 atomic regions from SNP 141482 to 142082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,696 DEBUG Processing 193/667 atomic regions from SNP 57792 to 58393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,727 DEBUG Processing 102/601 atomic regions from SNP 30325 to 30925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,754 DEBUG Processing 567/721 atomic regions from SNP 169950 to 170550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,765 DEBUG Processing 473/680 atomic regions from SNP 141782 to 142382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,912 DEBUG Processing 194/667 atomic regions from SNP 58093 to 58694 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,947 DEBUG Processing 103/601 atomic regions from SNP 30625 to 31225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,995 DEBUG Processing 474/680 atomic regions from SNP 142082 to 142682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,020 DEBUG Processing 568/721 atomic regions from SNP 170250 to 170850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,125 DEBUG Processing 195/667 atomic regions from SNP 58394 to 58995 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,164 DEBUG Processing 104/601 atomic regions from SNP 30925 to 31525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,231 DEBUG Processing 475/680 atomic regions from SNP 142382 to 142982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,296 DEBUG Processing 569/721 atomic regions from SNP 170550 to 171150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,342 DEBUG Processing 196/667 atomic regions from SNP 58695 to 59296 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,375 DEBUG Processing 105/601 atomic regions from SNP 31225 to 31825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,463 DEBUG Processing 476/680 atomic regions from SNP 142682 to 143282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,561 DEBUG Processing 570/721 atomic regions from SNP 170850 to 171450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,568 DEBUG Processing 197/667 atomic regions from SNP 58996 to 59597 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,592 DEBUG Processing 106/601 atomic regions from SNP 31525 to 32125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,687 DEBUG Processing 477/680 atomic regions from SNP 142982 to 143582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,812 DEBUG Processing 107/601 atomic regions from SNP 31825 to 32425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,837 DEBUG Processing 198/667 atomic regions from SNP 59297 to 59898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,842 DEBUG Processing 571/721 atomic regions from SNP 171150 to 171750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,907 DEBUG Processing 478/680 atomic regions from SNP 143282 to 143882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,027 DEBUG Processing 108/601 atomic regions from SNP 32125 to 32725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,062 DEBUG Processing 199/667 atomic regions from SNP 59598 to 60199 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,111 DEBUG Processing 572/721 atomic regions from SNP 171450 to 172050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,125 DEBUG Processing 479/680 atomic regions from SNP 143582 to 144182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,235 DEBUG Processing 109/601 atomic regions from SNP 32425 to 33025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,285 DEBUG Processing 200/667 atomic regions from SNP 59899 to 60500 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,353 DEBUG Processing 480/680 atomic regions from SNP 143882 to 144482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,370 DEBUG Processing 573/721 atomic regions from SNP 171750 to 172350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,442 DEBUG Processing 110/601 atomic regions from SNP 32725 to 33325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,503 DEBUG Processing 201/667 atomic regions from SNP 60200 to 60801 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,577 DEBUG Processing 481/680 atomic regions from SNP 144182 to 144782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,625 DEBUG Processing 574/721 atomic regions from SNP 172050 to 172650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,650 DEBUG Processing 111/601 atomic regions from SNP 33025 to 33625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,721 DEBUG Processing 202/667 atomic regions from SNP 60501 to 61102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,802 DEBUG Processing 482/680 atomic regions from SNP 144482 to 145082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,858 DEBUG Processing 112/601 atomic regions from SNP 33325 to 33925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,874 DEBUG Processing 575/721 atomic regions from SNP 172350 to 172950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,943 DEBUG Processing 203/667 atomic regions from SNP 60802 to 61403 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,998 DEBUG Segmenting atomic regions: 2025-01-31 09:56:23,029 DEBUG Processing 483/680 atomic regions from SNP 144782 to 145382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,073 DEBUG Processing 113/601 atomic regions from SNP 33625 to 34225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,075 DEBUG Processing 1/564 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,123 DEBUG Processing 576/721 atomic regions from SNP 172650 to 173250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,163 DEBUG Processing 204/667 atomic regions from SNP 61103 to 61704 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,254 DEBUG Processing 484/680 atomic regions from SNP 145082 to 145682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,287 DEBUG Processing 114/601 atomic regions from SNP 33925 to 34525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,287 DEBUG Processing 2/564 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,380 DEBUG Processing 205/667 atomic regions from SNP 61404 to 62005 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,383 DEBUG Processing 577/721 atomic regions from SNP 172950 to 173550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,480 DEBUG Processing 485/680 atomic regions from SNP 145382 to 145982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,500 DEBUG Processing 115/601 atomic regions from SNP 34225 to 34825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,513 DEBUG Processing 3/564 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,598 DEBUG Processing 206/667 atomic regions from SNP 61705 to 62306 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,640 DEBUG Processing 578/721 atomic regions from SNP 173250 to 173850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,701 DEBUG Processing 486/680 atomic regions from SNP 145682 to 146282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,714 DEBUG Processing 116/601 atomic regions from SNP 34525 to 35125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,752 DEBUG Processing 4/564 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,818 DEBUG Processing 207/667 atomic regions from SNP 62006 to 62607 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,905 DEBUG Processing 579/721 atomic regions from SNP 173550 to 174150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,926 DEBUG Processing 487/680 atomic regions from SNP 145982 to 146582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,929 DEBUG Processing 117/601 atomic regions from SNP 34825 to 35425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,977 DEBUG Processing 5/564 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,040 DEBUG Processing 208/667 atomic regions from SNP 62307 to 62908 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,144 DEBUG Processing 118/601 atomic regions from SNP 35125 to 35725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,150 DEBUG Processing 488/680 atomic regions from SNP 146282 to 146882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,156 DEBUG Processing 580/721 atomic regions from SNP 173850 to 174450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,204 DEBUG Processing 6/564 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,259 DEBUG Processing 209/667 atomic regions from SNP 62608 to 63209 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,358 DEBUG Processing 119/601 atomic regions from SNP 35425 to 36025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,373 DEBUG Processing 489/680 atomic regions from SNP 146582 to 147182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,386 DEBUG Processing 581/721 atomic regions from SNP 174150 to 174750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,439 DEBUG Processing 7/564 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,482 DEBUG Processing 210/667 atomic regions from SNP 62909 to 63510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,578 DEBUG Processing 120/601 atomic regions from SNP 35725 to 36325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,604 DEBUG Processing 490/680 atomic regions from SNP 146882 to 147482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,622 DEBUG Processing 582/721 atomic regions from SNP 174450 to 175050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,690 DEBUG Processing 8/564 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,700 DEBUG Processing 211/667 atomic regions from SNP 63210 to 63811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,796 DEBUG Processing 121/601 atomic regions from SNP 36025 to 36625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,832 DEBUG Processing 491/680 atomic regions from SNP 147182 to 147782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,856 DEBUG Processing 583/721 atomic regions from SNP 174750 to 175350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,924 DEBUG Processing 212/667 atomic regions from SNP 63511 to 64112 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,945 DEBUG Processing 9/564 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,013 DEBUG Processing 122/601 atomic regions from SNP 36325 to 36925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,060 DEBUG Processing 492/680 atomic regions from SNP 147482 to 148082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,090 DEBUG Processing 584/721 atomic regions from SNP 175050 to 175650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,146 DEBUG Processing 213/667 atomic regions from SNP 63812 to 64413 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,196 DEBUG Processing 10/564 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,247 DEBUG Processing 123/601 atomic regions from SNP 36625 to 37225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,302 DEBUG Processing 493/680 atomic regions from SNP 147782 to 148382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,333 DEBUG Processing 585/721 atomic regions from SNP 175350 to 175950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,366 DEBUG Processing 214/667 atomic regions from SNP 64113 to 64714 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,441 DEBUG Processing 11/564 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,457 DEBUG Processing 124/601 atomic regions from SNP 36925 to 37525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,529 DEBUG Processing 494/680 atomic regions from SNP 148082 to 148682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,571 DEBUG Processing 586/721 atomic regions from SNP 175650 to 176250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,588 DEBUG Processing 215/667 atomic regions from SNP 64414 to 65015 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,663 DEBUG Processing 125/601 atomic regions from SNP 37225 to 37825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,677 DEBUG Processing 12/564 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,759 DEBUG Processing 495/680 atomic regions from SNP 148382 to 148982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,813 DEBUG Processing 216/667 atomic regions from SNP 64715 to 65316 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,826 DEBUG Processing 587/721 atomic regions from SNP 175950 to 176550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,872 DEBUG Processing 126/601 atomic regions from SNP 37525 to 38125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,900 DEBUG Processing 13/564 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,993 DEBUG Processing 496/680 atomic regions from SNP 148682 to 149282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,040 DEBUG Processing 217/667 atomic regions from SNP 65016 to 65617 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,082 DEBUG Processing 127/601 atomic regions from SNP 37825 to 38425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,084 DEBUG Processing 588/721 atomic regions from SNP 176250 to 176850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,110 DEBUG Processing 14/564 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,224 DEBUG Processing 497/680 atomic regions from SNP 148982 to 149582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,275 DEBUG Processing 218/667 atomic regions from SNP 65317 to 65918 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,300 DEBUG Processing 128/601 atomic regions from SNP 38125 to 38725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,323 DEBUG Processing 15/564 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,343 DEBUG Processing 589/721 atomic regions from SNP 176550 to 177150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,455 DEBUG Processing 498/680 atomic regions from SNP 149282 to 149882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,507 DEBUG Processing 219/667 atomic regions from SNP 65618 to 66219 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,523 DEBUG Processing 129/601 atomic regions from SNP 38425 to 39025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,543 DEBUG Processing 16/564 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,604 DEBUG Processing 590/721 atomic regions from SNP 176850 to 177450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,687 DEBUG Processing 499/680 atomic regions from SNP 149582 to 150182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,742 DEBUG Processing 220/667 atomic regions from SNP 65919 to 66520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,745 DEBUG Processing 130/601 atomic regions from SNP 38725 to 39325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,765 DEBUG Processing 17/564 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,853 DEBUG Processing 591/721 atomic regions from SNP 177150 to 177750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,913 DEBUG Processing 500/680 atomic regions from SNP 149882 to 150482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,968 DEBUG Processing 131/601 atomic regions from SNP 39025 to 39625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,971 DEBUG Processing 221/667 atomic regions from SNP 66220 to 66821 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,985 DEBUG Processing 18/564 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,119 DEBUG Processing 592/721 atomic regions from SNP 177450 to 178050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,145 DEBUG Processing 501/680 atomic regions from SNP 150182 to 150782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,187 DEBUG Processing 132/601 atomic regions from SNP 39325 to 39925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,195 DEBUG Processing 222/667 atomic regions from SNP 66521 to 67122 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,215 DEBUG Processing 19/564 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,367 DEBUG Processing 502/680 atomic regions from SNP 150482 to 151082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,381 DEBUG Processing 593/721 atomic regions from SNP 177750 to 178350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,405 DEBUG Processing 133/601 atomic regions from SNP 39625 to 40225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,418 DEBUG Processing 223/667 atomic regions from SNP 66822 to 67423 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,428 DEBUG Processing 20/564 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,596 DEBUG Processing 503/680 atomic regions from SNP 150782 to 151382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,626 DEBUG Processing 134/601 atomic regions from SNP 39925 to 40525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,646 DEBUG Processing 224/667 atomic regions from SNP 67123 to 67724 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,648 DEBUG Processing 21/564 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,652 DEBUG Processing 594/721 atomic regions from SNP 178050 to 178650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,820 DEBUG Processing 504/680 atomic regions from SNP 151082 to 151682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,852 DEBUG Processing 135/601 atomic regions from SNP 40225 to 40825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,863 DEBUG Processing 22/564 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,874 DEBUG Processing 225/667 atomic regions from SNP 67424 to 68025 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,917 DEBUG Processing 595/721 atomic regions from SNP 178350 to 178950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,046 DEBUG Processing 505/680 atomic regions from SNP 151382 to 151982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,069 DEBUG Processing 136/601 atomic regions from SNP 40525 to 41125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,081 DEBUG Processing 23/564 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,102 DEBUG Processing 226/667 atomic regions from SNP 67725 to 68326 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,182 DEBUG Processing 596/721 atomic regions from SNP 178650 to 179250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,292 DEBUG Processing 137/601 atomic regions from SNP 40825 to 41425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,304 DEBUG Processing 506/680 atomic regions from SNP 151682 to 152282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,304 DEBUG Processing 24/564 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,330 DEBUG Processing 227/667 atomic regions from SNP 68026 to 68627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,423 DEBUG Processing 597/721 atomic regions from SNP 178950 to 179550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,510 DEBUG Processing 138/601 atomic regions from SNP 41125 to 41725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,523 DEBUG Processing 25/564 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,541 DEBUG Processing 507/680 atomic regions from SNP 151982 to 152582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,559 DEBUG Processing 228/667 atomic regions from SNP 68327 to 68928 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,678 DEBUG Processing 598/721 atomic regions from SNP 179250 to 179850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,731 DEBUG Processing 139/601 atomic regions from SNP 41425 to 42025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,746 DEBUG Processing 26/564 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,784 DEBUG Processing 508/680 atomic regions from SNP 152282 to 152882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,791 DEBUG Processing 229/667 atomic regions from SNP 68628 to 69229 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,946 DEBUG Processing 599/721 atomic regions from SNP 179550 to 180150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,956 DEBUG Processing 140/601 atomic regions from SNP 41725 to 42325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,977 DEBUG Processing 27/564 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,029 DEBUG Processing 230/667 atomic regions from SNP 68929 to 69530 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,035 DEBUG Processing 509/680 atomic regions from SNP 152582 to 153182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,175 DEBUG Processing 141/601 atomic regions from SNP 42025 to 42625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,200 DEBUG Processing 28/564 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,218 DEBUG Processing 600/721 atomic regions from SNP 179850 to 180450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,260 DEBUG Processing 231/667 atomic regions from SNP 69230 to 69831 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,287 DEBUG Processing 510/680 atomic regions from SNP 152882 to 153482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,391 DEBUG Processing 142/601 atomic regions from SNP 42325 to 42925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,421 DEBUG Processing 29/564 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,492 DEBUG Processing 232/667 atomic regions from SNP 69531 to 70132 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,492 DEBUG Processing 601/721 atomic regions from SNP 180150 to 180750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,519 DEBUG Processing 511/680 atomic regions from SNP 153182 to 153782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,606 DEBUG Processing 143/601 atomic regions from SNP 42625 to 43225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,640 DEBUG Processing 30/564 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,722 DEBUG Processing 233/667 atomic regions from SNP 69832 to 70433 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,739 DEBUG Processing 602/721 atomic regions from SNP 180450 to 181050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,748 DEBUG Processing 512/680 atomic regions from SNP 153482 to 154082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,831 DEBUG Processing 144/601 atomic regions from SNP 42925 to 43525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,854 DEBUG Processing 31/564 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,949 DEBUG Processing 234/667 atomic regions from SNP 70133 to 70734 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,973 DEBUG Processing 513/680 atomic regions from SNP 153782 to 154382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,975 DEBUG Processing 603/721 atomic regions from SNP 180750 to 181350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,057 DEBUG Processing 145/601 atomic regions from SNP 43225 to 43825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,090 DEBUG Processing 32/564 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,175 DEBUG Processing 235/667 atomic regions from SNP 70434 to 71035 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,207 DEBUG Processing 514/680 atomic regions from SNP 154082 to 154682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,226 DEBUG Processing 604/721 atomic regions from SNP 181050 to 181650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,272 DEBUG Processing 146/601 atomic regions from SNP 43525 to 44125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,344 DEBUG Processing 33/564 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,401 DEBUG Processing 236/667 atomic regions from SNP 70735 to 71336 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,458 DEBUG Processing 515/680 atomic regions from SNP 154382 to 154982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,487 DEBUG Processing 147/601 atomic regions from SNP 43825 to 44425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,490 DEBUG Processing 605/721 atomic regions from SNP 181350 to 181950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,589 DEBUG Processing 34/564 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,630 DEBUG Processing 237/667 atomic regions from SNP 71036 to 71637 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,704 DEBUG Processing 148/601 atomic regions from SNP 44125 to 44725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,709 DEBUG Processing 516/680 atomic regions from SNP 154682 to 155282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,754 DEBUG Processing 606/721 atomic regions from SNP 181650 to 182250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,817 DEBUG Processing 35/564 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,859 DEBUG Processing 238/667 atomic regions from SNP 71337 to 71938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,920 DEBUG Processing 149/601 atomic regions from SNP 44425 to 45025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,987 DEBUG Processing 517/680 atomic regions from SNP 154982 to 155582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,001 DEBUG Processing 607/721 atomic regions from SNP 181950 to 182550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,041 DEBUG Processing 36/564 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,089 DEBUG Processing 239/667 atomic regions from SNP 71638 to 72239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,139 DEBUG Processing 150/601 atomic regions from SNP 44725 to 45325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,224 DEBUG Processing 518/680 atomic regions from SNP 155282 to 155882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,239 DEBUG Processing 608/721 atomic regions from SNP 182250 to 182850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,265 DEBUG Processing 37/564 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,322 DEBUG Processing 240/667 atomic regions from SNP 71939 to 72540 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,356 DEBUG Processing 151/601 atomic regions from SNP 45025 to 45625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,454 DEBUG Processing 519/680 atomic regions from SNP 155582 to 156182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,482 DEBUG Processing 609/721 atomic regions from SNP 182550 to 183150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,490 DEBUG Processing 38/564 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,551 DEBUG Processing 241/667 atomic regions from SNP 72240 to 72841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,573 DEBUG Processing 152/601 atomic regions from SNP 45325 to 45925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,692 DEBUG Processing 520/680 atomic regions from SNP 155882 to 156482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,713 DEBUG Processing 39/564 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,732 DEBUG Processing 610/721 atomic regions from SNP 182850 to 183450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,783 DEBUG Processing 242/667 atomic regions from SNP 72541 to 73142 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,794 DEBUG Processing 153/601 atomic regions from SNP 45625 to 46225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,939 DEBUG Processing 40/564 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,944 DEBUG Processing 521/680 atomic regions from SNP 156182 to 156782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,975 DEBUG Processing 611/721 atomic regions from SNP 183150 to 183750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,014 DEBUG Processing 243/667 atomic regions from SNP 72842 to 73443 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,017 DEBUG Processing 154/601 atomic regions from SNP 45925 to 46525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,163 DEBUG Processing 41/564 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,208 DEBUG Processing 522/680 atomic regions from SNP 156482 to 157082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,221 DEBUG Processing 612/721 atomic regions from SNP 183450 to 184050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,238 DEBUG Processing 155/601 atomic regions from SNP 46225 to 46825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,244 DEBUG Processing 244/667 atomic regions from SNP 73143 to 73744 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,383 DEBUG Processing 42/564 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,443 DEBUG Processing 523/680 atomic regions from SNP 156782 to 157382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,462 DEBUG Processing 156/601 atomic regions from SNP 46525 to 47125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,463 DEBUG Processing 613/721 atomic regions from SNP 183750 to 184350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,475 DEBUG Processing 245/667 atomic regions from SNP 73444 to 74045 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,610 DEBUG Processing 43/564 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,690 DEBUG Processing 157/601 atomic regions from SNP 46825 to 47425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,699 DEBUG Processing 524/680 atomic regions from SNP 157082 to 157682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,706 DEBUG Processing 614/721 atomic regions from SNP 184050 to 184650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,706 DEBUG Processing 246/667 atomic regions from SNP 73745 to 74346 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,853 DEBUG Processing 44/564 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,919 DEBUG Processing 158/601 atomic regions from SNP 47125 to 47725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,942 DEBUG Processing 247/667 atomic regions from SNP 74046 to 74647 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,943 DEBUG Processing 525/680 atomic regions from SNP 157382 to 157982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,954 DEBUG Processing 615/721 atomic regions from SNP 184350 to 184950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,097 DEBUG Processing 45/564 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,145 DEBUG Processing 159/601 atomic regions from SNP 47425 to 48025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,179 DEBUG Processing 248/667 atomic regions from SNP 74347 to 74948 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,183 DEBUG Processing 526/680 atomic regions from SNP 157682 to 158282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,198 DEBUG Processing 616/721 atomic regions from SNP 184650 to 185250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,339 DEBUG Processing 46/564 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,366 DEBUG Processing 160/601 atomic regions from SNP 47725 to 48325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,413 DEBUG Processing 249/667 atomic regions from SNP 74648 to 75249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,425 DEBUG Processing 527/680 atomic regions from SNP 157982 to 158582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,443 DEBUG Processing 617/721 atomic regions from SNP 184950 to 185550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,575 DEBUG Processing 47/564 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,587 DEBUG Processing 161/601 atomic regions from SNP 48025 to 48625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,648 DEBUG Processing 250/667 atomic regions from SNP 74949 to 75550 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,679 DEBUG Processing 528/680 atomic regions from SNP 158282 to 158882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,715 DEBUG Processing 618/721 atomic regions from SNP 185250 to 185850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,805 DEBUG Processing 162/601 atomic regions from SNP 48325 to 48925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,818 DEBUG Processing 48/564 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,878 DEBUG Processing 251/667 atomic regions from SNP 75250 to 75851 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,917 DEBUG Processing 529/680 atomic regions from SNP 158582 to 159182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,971 DEBUG Processing 619/721 atomic regions from SNP 185550 to 186150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,025 DEBUG Processing 163/601 atomic regions from SNP 48625 to 49225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,066 DEBUG Processing 49/564 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,116 DEBUG Processing 252/667 atomic regions from SNP 75551 to 76152 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,161 DEBUG Processing 530/680 atomic regions from SNP 158882 to 159482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,227 DEBUG Processing 620/721 atomic regions from SNP 185850 to 186450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,249 DEBUG Processing 164/601 atomic regions from SNP 48925 to 49525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,304 DEBUG Processing 50/564 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,343 DEBUG Processing 253/667 atomic regions from SNP 75852 to 76453 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,401 DEBUG Processing 531/680 atomic regions from SNP 159182 to 159782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,464 DEBUG Processing 621/721 atomic regions from SNP 186150 to 186750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,469 DEBUG Processing 165/601 atomic regions from SNP 49225 to 49825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,534 DEBUG Processing 51/564 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,572 DEBUG Processing 254/667 atomic regions from SNP 76153 to 76754 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,646 DEBUG Processing 532/680 atomic regions from SNP 159482 to 160082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,700 DEBUG Processing 166/601 atomic regions from SNP 49525 to 50125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,715 DEBUG Processing 622/721 atomic regions from SNP 186450 to 187050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,781 DEBUG Processing 52/564 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,809 DEBUG Processing 255/667 atomic regions from SNP 76454 to 77055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,884 DEBUG Processing 533/680 atomic regions from SNP 159782 to 160382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,921 DEBUG Processing 167/601 atomic regions from SNP 49825 to 50425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,963 DEBUG Processing 623/721 atomic regions from SNP 186750 to 187350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,011 DEBUG Processing 53/564 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,043 DEBUG Processing 256/667 atomic regions from SNP 76755 to 77356 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,120 DEBUG Processing 534/680 atomic regions from SNP 160082 to 160682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,150 DEBUG Processing 168/601 atomic regions from SNP 50125 to 50725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,224 DEBUG Processing 624/721 atomic regions from SNP 187050 to 187650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,241 DEBUG Processing 54/564 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,277 DEBUG Processing 257/667 atomic regions from SNP 77056 to 77657 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,364 DEBUG Processing 169/601 atomic regions from SNP 50425 to 51025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,367 DEBUG Processing 535/680 atomic regions from SNP 160382 to 160982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,470 DEBUG Processing 55/564 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,492 DEBUG Processing 625/721 atomic regions from SNP 187350 to 187950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,512 DEBUG Processing 258/667 atomic regions from SNP 77357 to 77958 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,577 DEBUG Processing 170/601 atomic regions from SNP 50725 to 51325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,600 DEBUG Processing 536/680 atomic regions from SNP 160682 to 161282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,705 DEBUG Processing 56/564 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,749 DEBUG Processing 259/667 atomic regions from SNP 77658 to 78259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,764 DEBUG Processing 626/721 atomic regions from SNP 187650 to 188250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,797 DEBUG Processing 171/601 atomic regions from SNP 51025 to 51625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,827 DEBUG Processing 537/680 atomic regions from SNP 160982 to 161582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,938 DEBUG Processing 57/564 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,991 DEBUG Processing 260/667 atomic regions from SNP 77959 to 78560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,030 DEBUG Processing 172/601 atomic regions from SNP 51325 to 51925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,035 DEBUG Processing 627/721 atomic regions from SNP 187950 to 188550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,063 DEBUG Processing 538/680 atomic regions from SNP 161282 to 161882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,158 DEBUG Processing 58/564 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,225 DEBUG Processing 261/667 atomic regions from SNP 78260 to 78861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,257 DEBUG Processing 173/601 atomic regions from SNP 51625 to 52225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,296 DEBUG Processing 539/680 atomic regions from SNP 161582 to 162182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,306 DEBUG Processing 628/721 atomic regions from SNP 188250 to 188850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,376 DEBUG Processing 59/564 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,484 DEBUG Processing 262/667 atomic regions from SNP 78561 to 79162 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,486 DEBUG Processing 174/601 atomic regions from SNP 51925 to 52525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,532 DEBUG Processing 540/680 atomic regions from SNP 161882 to 162482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,578 DEBUG Processing 629/721 atomic regions from SNP 188550 to 189150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,600 DEBUG Processing 60/564 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,709 DEBUG Processing 175/601 atomic regions from SNP 52225 to 52825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,744 DEBUG Processing 263/667 atomic regions from SNP 78862 to 79463 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,771 DEBUG Processing 541/680 atomic regions from SNP 162182 to 162782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,834 DEBUG Processing 61/564 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,842 DEBUG Processing 630/721 atomic regions from SNP 188850 to 189450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,929 DEBUG Processing 176/601 atomic regions from SNP 52525 to 53125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,005 DEBUG Processing 264/667 atomic regions from SNP 79163 to 79764 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,013 DEBUG Processing 542/680 atomic regions from SNP 162482 to 163082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,072 DEBUG Processing 62/564 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,084 DEBUG Processing 631/721 atomic regions from SNP 189150 to 189750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,145 DEBUG Processing 177/601 atomic regions from SNP 52825 to 53425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,244 DEBUG Processing 265/667 atomic regions from SNP 79464 to 80065 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,261 DEBUG Processing 543/680 atomic regions from SNP 162782 to 163382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,312 DEBUG Processing 63/564 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,328 DEBUG Processing 632/721 atomic regions from SNP 189450 to 190050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,361 DEBUG Processing 178/601 atomic regions from SNP 53125 to 53725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,474 DEBUG Processing 266/667 atomic regions from SNP 79765 to 80366 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,524 DEBUG Processing 544/680 atomic regions from SNP 163082 to 163682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,556 DEBUG Processing 64/564 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,578 DEBUG Processing 179/601 atomic regions from SNP 53425 to 54025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,580 DEBUG Processing 633/721 atomic regions from SNP 189750 to 190350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,713 DEBUG Processing 267/667 atomic regions from SNP 80066 to 80667 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,778 DEBUG Processing 545/680 atomic regions from SNP 163382 to 163982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,795 DEBUG Processing 65/564 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,797 DEBUG Processing 180/601 atomic regions from SNP 53725 to 54325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,815 DEBUG Processing 634/721 atomic regions from SNP 190050 to 190650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,947 DEBUG Processing 268/667 atomic regions from SNP 80367 to 80968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,013 DEBUG Processing 181/601 atomic regions from SNP 54025 to 54625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,020 DEBUG Processing 546/680 atomic regions from SNP 163682 to 164282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,023 DEBUG Processing 66/564 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,051 DEBUG Processing 635/721 atomic regions from SNP 190350 to 190950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,172 DEBUG Processing 269/667 atomic regions from SNP 80668 to 81269 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,234 DEBUG Processing 182/601 atomic regions from SNP 54325 to 54925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,260 DEBUG Processing 547/680 atomic regions from SNP 163982 to 164582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,276 DEBUG Processing 67/564 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,288 DEBUG Processing 636/721 atomic regions from SNP 190650 to 191250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,407 DEBUG Processing 270/667 atomic regions from SNP 80969 to 81570 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,450 DEBUG Processing 183/601 atomic regions from SNP 54625 to 55225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,500 DEBUG Processing 548/680 atomic regions from SNP 164282 to 164882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,516 DEBUG Processing 68/564 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,527 DEBUG Processing 637/721 atomic regions from SNP 190950 to 191550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,637 DEBUG Processing 271/667 atomic regions from SNP 81270 to 81871 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,670 DEBUG Processing 184/601 atomic regions from SNP 54925 to 55525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,738 DEBUG Processing 69/564 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,742 DEBUG Processing 549/680 atomic regions from SNP 164582 to 165182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,766 DEBUG Processing 638/721 atomic regions from SNP 191250 to 191850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,863 DEBUG Processing 272/667 atomic regions from SNP 81571 to 82172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,891 DEBUG Processing 185/601 atomic regions from SNP 55225 to 55825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,959 DEBUG Processing 70/564 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,998 DEBUG Processing 550/680 atomic regions from SNP 164882 to 165482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,004 DEBUG Processing 639/721 atomic regions from SNP 191550 to 192150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,095 DEBUG Processing 273/667 atomic regions from SNP 81872 to 82473 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,112 DEBUG Processing 186/601 atomic regions from SNP 55525 to 56125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,179 DEBUG Processing 71/564 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,238 DEBUG Processing 640/721 atomic regions from SNP 191850 to 192450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,259 DEBUG Processing 551/680 atomic regions from SNP 165182 to 165782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,326 DEBUG Processing 274/667 atomic regions from SNP 82173 to 82774 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,331 DEBUG Processing 187/601 atomic regions from SNP 55825 to 56425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,396 DEBUG Processing 72/564 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,470 DEBUG Processing 641/721 atomic regions from SNP 192150 to 192750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,507 DEBUG Processing 552/680 atomic regions from SNP 165482 to 166082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,551 DEBUG Processing 188/601 atomic regions from SNP 56125 to 56725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,557 DEBUG Processing 275/667 atomic regions from SNP 82474 to 83075 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,614 DEBUG Processing 73/564 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,705 DEBUG Processing 642/721 atomic regions from SNP 192450 to 193050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,742 DEBUG Processing 553/680 atomic regions from SNP 165782 to 166382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,779 DEBUG Processing 189/601 atomic regions from SNP 56425 to 57025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,789 DEBUG Processing 276/667 atomic regions from SNP 82775 to 83376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,836 DEBUG Processing 74/564 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,942 DEBUG Processing 643/721 atomic regions from SNP 192750 to 193350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,983 DEBUG Processing 554/680 atomic regions from SNP 166082 to 166682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,012 DEBUG Processing 190/601 atomic regions from SNP 56725 to 57325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,021 DEBUG Processing 277/667 atomic regions from SNP 83076 to 83677 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,056 DEBUG Processing 75/564 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,180 DEBUG Processing 644/721 atomic regions from SNP 193050 to 193650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,236 DEBUG Processing 191/601 atomic regions from SNP 57025 to 57625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,242 DEBUG Processing 555/680 atomic regions from SNP 166382 to 166982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,261 DEBUG Processing 278/667 atomic regions from SNP 83377 to 83978 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,284 DEBUG Processing 76/564 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,451 DEBUG Processing 645/721 atomic regions from SNP 193350 to 193950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,469 DEBUG Processing 192/601 atomic regions from SNP 57325 to 57925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,506 DEBUG Processing 279/667 atomic regions from SNP 83678 to 84279 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,513 DEBUG Processing 556/680 atomic regions from SNP 166682 to 167282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,521 DEBUG Processing 77/564 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,686 DEBUG Processing 193/601 atomic regions from SNP 57625 to 58225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,710 DEBUG Processing 646/721 atomic regions from SNP 193650 to 194250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,741 DEBUG Processing 280/667 atomic regions from SNP 83979 to 84580 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,755 DEBUG Processing 78/564 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,775 DEBUG Processing 557/680 atomic regions from SNP 166982 to 167582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,905 DEBUG Processing 194/601 atomic regions from SNP 57925 to 58525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,954 DEBUG Processing 647/721 atomic regions from SNP 193950 to 194550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,986 DEBUG Processing 79/564 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,006 DEBUG Processing 281/667 atomic regions from SNP 84280 to 84881 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,040 DEBUG Processing 558/680 atomic regions from SNP 167282 to 167882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,128 DEBUG Processing 195/601 atomic regions from SNP 58225 to 58825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,186 DEBUG Processing 648/721 atomic regions from SNP 194250 to 194850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,206 DEBUG Processing 80/564 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,260 DEBUG Processing 282/667 atomic regions from SNP 84581 to 85182 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,287 DEBUG Processing 559/680 atomic regions from SNP 167582 to 168182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,368 DEBUG Processing 196/601 atomic regions from SNP 58525 to 59125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,413 DEBUG Processing 649/721 atomic regions from SNP 194550 to 195150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,415 DEBUG Processing 81/564 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,508 DEBUG Processing 283/667 atomic regions from SNP 84882 to 85483 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,523 DEBUG Processing 560/680 atomic regions from SNP 167882 to 168482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,616 DEBUG Processing 197/601 atomic regions from SNP 58825 to 59425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,636 DEBUG Processing 82/564 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,649 DEBUG Processing 650/721 atomic regions from SNP 194850 to 195450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,764 DEBUG Processing 561/680 atomic regions from SNP 168182 to 168782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,769 DEBUG Processing 284/667 atomic regions from SNP 85183 to 85784 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,876 DEBUG Processing 83/564 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,877 DEBUG Processing 198/601 atomic regions from SNP 59125 to 59725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,893 DEBUG Processing 651/721 atomic regions from SNP 195150 to 195750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,008 DEBUG Processing 562/680 atomic regions from SNP 168482 to 169082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,028 DEBUG Processing 285/667 atomic regions from SNP 85484 to 86085 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,138 DEBUG Processing 652/721 atomic regions from SNP 195450 to 196050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,138 DEBUG Processing 199/601 atomic regions from SNP 59425 to 60025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,143 DEBUG Processing 84/564 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,268 DEBUG Processing 563/680 atomic regions from SNP 168782 to 169382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,270 DEBUG Processing 286/667 atomic regions from SNP 85785 to 86386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,366 DEBUG Processing 200/601 atomic regions from SNP 59725 to 60325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,383 DEBUG Processing 653/721 atomic regions from SNP 195750 to 196350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,395 DEBUG Processing 85/564 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,503 DEBUG Processing 564/680 atomic regions from SNP 169082 to 169682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,505 DEBUG Processing 287/667 atomic regions from SNP 86086 to 86687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,591 DEBUG Processing 201/601 atomic regions from SNP 60025 to 60625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,625 DEBUG Processing 654/721 atomic regions from SNP 196050 to 196650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,635 DEBUG Processing 86/564 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,736 DEBUG Processing 288/667 atomic regions from SNP 86387 to 86988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,745 DEBUG Processing 565/680 atomic regions from SNP 169382 to 169982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,818 DEBUG Processing 202/601 atomic regions from SNP 60325 to 60925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,867 DEBUG Processing 655/721 atomic regions from SNP 196350 to 196950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,878 DEBUG Processing 87/564 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,964 DEBUG Processing 289/667 atomic regions from SNP 86688 to 87288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,007 DEBUG Processing 566/680 atomic regions from SNP 169682 to 170282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,047 DEBUG Processing 203/601 atomic regions from SNP 60625 to 61225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,108 DEBUG Processing 656/721 atomic regions from SNP 196650 to 197250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,117 DEBUG Processing 88/564 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,191 DEBUG Processing 290/667 atomic regions from SNP 86988 to 87588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,267 DEBUG Processing 567/680 atomic regions from SNP 169982 to 170582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,274 DEBUG Processing 204/601 atomic regions from SNP 60925 to 61525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,352 DEBUG Processing 657/721 atomic regions from SNP 196950 to 197550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,375 DEBUG Processing 89/564 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,419 DEBUG Processing 291/667 atomic regions from SNP 87288 to 87888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,505 DEBUG Processing 205/601 atomic regions from SNP 61225 to 61825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,505 DEBUG Processing 568/680 atomic regions from SNP 170282 to 170882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,596 DEBUG Processing 658/721 atomic regions from SNP 197250 to 197850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,626 DEBUG Processing 90/564 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,651 DEBUG Processing 292/667 atomic regions from SNP 87588 to 88188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,730 DEBUG Processing 206/601 atomic regions from SNP 61525 to 62125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,741 DEBUG Processing 569/680 atomic regions from SNP 170582 to 171182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,837 DEBUG Processing 659/721 atomic regions from SNP 197550 to 198150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,881 DEBUG Processing 91/564 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,885 DEBUG Processing 293/667 atomic regions from SNP 87888 to 88488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,951 DEBUG Processing 207/601 atomic regions from SNP 61825 to 62425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,972 DEBUG Processing 570/680 atomic regions from SNP 170882 to 171482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,077 DEBUG Processing 660/721 atomic regions from SNP 197850 to 198450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,121 DEBUG Processing 294/667 atomic regions from SNP 88188 to 88788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,135 DEBUG Processing 92/564 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,196 DEBUG Processing 571/680 atomic regions from SNP 171182 to 171782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,196 DEBUG Processing 208/601 atomic regions from SNP 62125 to 62725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,330 DEBUG Processing 661/721 atomic regions from SNP 198150 to 198750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,377 DEBUG Processing 295/667 atomic regions from SNP 88488 to 89088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,382 DEBUG Processing 93/564 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,435 DEBUG Processing 209/601 atomic regions from SNP 62425 to 63025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,441 DEBUG Processing 572/680 atomic regions from SNP 171482 to 172082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,557 DEBUG Processing 662/721 atomic regions from SNP 198450 to 199050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,608 DEBUG Processing 296/667 atomic regions from SNP 88788 to 89388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,619 DEBUG Processing 94/564 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,676 DEBUG Processing 210/601 atomic regions from SNP 62725 to 63325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,688 DEBUG Processing 573/680 atomic regions from SNP 171782 to 172382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,781 DEBUG Processing 663/721 atomic regions from SNP 198750 to 199350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,832 DEBUG Processing 297/667 atomic regions from SNP 89088 to 89688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,857 DEBUG Processing 95/564 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,889 DEBUG Processing 211/601 atomic regions from SNP 63025 to 63625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,908 DEBUG Processing 574/680 atomic regions from SNP 172082 to 172682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,013 DEBUG Processing 664/721 atomic regions from SNP 199050 to 199650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,073 DEBUG Processing 298/667 atomic regions from SNP 89388 to 89988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,077 DEBUG Processing 96/564 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,111 DEBUG Processing 212/601 atomic regions from SNP 63325 to 63925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,129 DEBUG Processing 575/680 atomic regions from SNP 172382 to 172982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,243 DEBUG Processing 665/721 atomic regions from SNP 199350 to 199950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,302 DEBUG Processing 97/564 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,305 DEBUG Processing 299/667 atomic regions from SNP 89688 to 90288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,335 DEBUG Processing 213/601 atomic regions from SNP 63625 to 64225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,361 DEBUG Processing 576/680 atomic regions from SNP 172682 to 173282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,477 DEBUG Processing 666/721 atomic regions from SNP 199650 to 200250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,527 DEBUG Processing 98/564 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,539 DEBUG Processing 300/667 atomic regions from SNP 89988 to 90588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,560 DEBUG Processing 214/601 atomic regions from SNP 63925 to 64525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,592 DEBUG Processing 577/680 atomic regions from SNP 172982 to 173582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,705 DEBUG Processing 667/721 atomic regions from SNP 199950 to 200550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,744 DEBUG Processing 99/564 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,769 DEBUG Processing 301/667 atomic regions from SNP 90288 to 90888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,783 DEBUG Processing 215/601 atomic regions from SNP 64225 to 64825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,840 DEBUG Processing 578/680 atomic regions from SNP 173282 to 173882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,939 DEBUG Processing 668/721 atomic regions from SNP 200250 to 200850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,964 DEBUG Processing 100/564 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,002 DEBUG Processing 302/667 atomic regions from SNP 90588 to 91188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,006 DEBUG Processing 216/601 atomic regions from SNP 64525 to 65125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,073 DEBUG Processing 579/680 atomic regions from SNP 173582 to 174182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,168 DEBUG Processing 669/721 atomic regions from SNP 200550 to 201150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,176 DEBUG Processing 101/564 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,224 DEBUG Processing 217/601 atomic regions from SNP 64825 to 65425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,228 DEBUG Processing 303/667 atomic regions from SNP 90888 to 91488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,304 DEBUG Processing 580/680 atomic regions from SNP 173882 to 174482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,399 DEBUG Processing 102/564 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,404 DEBUG Processing 670/721 atomic regions from SNP 200850 to 201450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,449 DEBUG Processing 218/601 atomic regions from SNP 65125 to 65725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,462 DEBUG Processing 304/667 atomic regions from SNP 91188 to 91788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,532 DEBUG Processing 581/680 atomic regions from SNP 174182 to 174782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,617 DEBUG Processing 103/564 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,634 DEBUG Processing 671/721 atomic regions from SNP 201150 to 201750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,665 DEBUG Processing 219/601 atomic regions from SNP 65425 to 66025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,710 DEBUG Processing 305/667 atomic regions from SNP 91488 to 92088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,762 DEBUG Processing 582/680 atomic regions from SNP 174482 to 175082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,882 DEBUG Processing 104/564 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,885 DEBUG Processing 672/721 atomic regions from SNP 201450 to 202050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,897 DEBUG Processing 220/601 atomic regions from SNP 65725 to 66325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,989 DEBUG Processing 306/667 atomic regions from SNP 91788 to 92388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,995 DEBUG Processing 583/680 atomic regions from SNP 174782 to 175382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,115 DEBUG Processing 221/601 atomic regions from SNP 66025 to 66625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,116 DEBUG Processing 673/721 atomic regions from SNP 201750 to 202350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,129 DEBUG Processing 105/564 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,220 DEBUG Processing 307/667 atomic regions from SNP 92088 to 92688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,234 DEBUG Processing 584/680 atomic regions from SNP 175082 to 175682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,334 DEBUG Processing 222/601 atomic regions from SNP 66325 to 66925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,348 DEBUG Processing 674/721 atomic regions from SNP 202050 to 202650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,349 DEBUG Processing 106/564 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,451 DEBUG Processing 308/667 atomic regions from SNP 92388 to 92988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,479 DEBUG Processing 585/680 atomic regions from SNP 175382 to 175982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,558 DEBUG Processing 223/601 atomic regions from SNP 66625 to 67225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,563 DEBUG Processing 107/564 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,582 DEBUG Processing 675/721 atomic regions from SNP 202350 to 202950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,664 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:56:47,680 DEBUG Processing 309/667 atomic regions from SNP 92688 to 93288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,733 DEBUG Processing 586/680 atomic regions from SNP 175682 to 176282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,782 DEBUG Processing 224/601 atomic regions from SNP 66925 to 67525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,795 DEBUG Processing 108/564 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,819 DEBUG Processing 676/721 atomic regions from SNP 202650 to 203250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,909 DEBUG Processing 310/667 atomic regions from SNP 92988 to 93588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,988 DEBUG Processing 587/680 atomic regions from SNP 175982 to 176582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,007 DEBUG Processing 225/601 atomic regions from SNP 67225 to 67825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,045 DEBUG Processing 109/564 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,058 DEBUG Processing 677/721 atomic regions from SNP 202950 to 203550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,147 DEBUG Processing 311/667 atomic regions from SNP 93288 to 93888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,229 DEBUG Processing 588/680 atomic regions from SNP 176282 to 176882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,241 DEBUG Processing 226/601 atomic regions from SNP 67525 to 68125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,285 DEBUG Processing 110/564 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,300 DEBUG Processing 678/721 atomic regions from SNP 203250 to 203850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,379 DEBUG Processing 312/667 atomic regions from SNP 93588 to 94188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,466 DEBUG Processing 589/680 atomic regions from SNP 176582 to 177182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,470 DEBUG Processing 227/601 atomic regions from SNP 67825 to 68425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,514 DEBUG Processing 111/564 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,542 DEBUG Processing 679/721 atomic regions from SNP 203550 to 204150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,609 DEBUG Processing 313/667 atomic regions from SNP 93888 to 94488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,704 DEBUG Processing 590/680 atomic regions from SNP 176882 to 177482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,715 DEBUG Processing 228/601 atomic regions from SNP 68125 to 68725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,752 DEBUG Processing 112/564 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,796 DEBUG Processing 680/721 atomic regions from SNP 203850 to 204450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,838 DEBUG Processing 314/667 atomic regions from SNP 94188 to 94788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,941 DEBUG Processing 229/601 atomic regions from SNP 68425 to 69025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,942 DEBUG Processing 591/680 atomic regions from SNP 177182 to 177782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,983 DEBUG Processing 113/564 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,066 DEBUG Processing 315/667 atomic regions from SNP 94488 to 95088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,069 DEBUG Processing 681/721 atomic regions from SNP 204150 to 204750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,161 DEBUG Processing 230/601 atomic regions from SNP 68725 to 69325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,169 DEBUG Processing 592/680 atomic regions from SNP 177482 to 178082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,203 DEBUG Processing 114/564 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,294 DEBUG Processing 316/667 atomic regions from SNP 94788 to 95388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,346 DEBUG Processing 682/721 atomic regions from SNP 204450 to 205050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,381 DEBUG Processing 231/601 atomic regions from SNP 69025 to 69625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,397 DEBUG Processing 593/680 atomic regions from SNP 177782 to 178382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,421 DEBUG Processing 115/564 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,522 DEBUG Processing 317/667 atomic regions from SNP 95088 to 95688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,603 DEBUG Processing 232/601 atomic regions from SNP 69325 to 69925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,616 DEBUG Processing 683/721 atomic regions from SNP 204750 to 205350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,626 DEBUG Processing 594/680 atomic regions from SNP 178082 to 178682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,637 DEBUG Processing 116/564 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,755 DEBUG Processing 318/667 atomic regions from SNP 95388 to 95988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,831 DEBUG Processing 233/601 atomic regions from SNP 69625 to 70225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,858 DEBUG Processing 117/564 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,858 DEBUG Processing 595/680 atomic regions from SNP 178382 to 178982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,889 DEBUG Processing 684/721 atomic regions from SNP 205050 to 205650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,991 DEBUG Processing 319/667 atomic regions from SNP 95688 to 96288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,065 DEBUG Processing 234/601 atomic regions from SNP 69925 to 70525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,103 DEBUG Processing 596/680 atomic regions from SNP 178682 to 179282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,114 DEBUG Processing 118/564 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,172 DEBUG Processing 685/721 atomic regions from SNP 205350 to 205950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,221 DEBUG Processing 320/667 atomic regions from SNP 95988 to 96588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,287 DEBUG Processing 235/601 atomic regions from SNP 70225 to 70825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,336 DEBUG Processing 597/680 atomic regions from SNP 178982 to 179582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,361 DEBUG Processing 119/564 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,453 DEBUG Processing 686/721 atomic regions from SNP 205650 to 206250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,454 DEBUG Processing 321/667 atomic regions from SNP 96288 to 96888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,513 DEBUG Processing 236/601 atomic regions from SNP 70525 to 71125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,581 DEBUG Processing 598/680 atomic regions from SNP 179282 to 179882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,630 DEBUG Processing 120/564 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,694 DEBUG Processing 322/667 atomic regions from SNP 96588 to 97188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,728 DEBUG Processing 687/721 atomic regions from SNP 205950 to 206550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,730 DEBUG Processing 237/601 atomic regions from SNP 70825 to 71425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,810 DEBUG Processing 599/680 atomic regions from SNP 179582 to 180182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,848 DEBUG Processing 121/564 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,922 DEBUG Processing 323/667 atomic regions from SNP 96888 to 97488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,948 DEBUG Processing 238/601 atomic regions from SNP 71125 to 71725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,988 DEBUG Processing 688/721 atomic regions from SNP 206250 to 206850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,038 DEBUG Processing 600/680 atomic regions from SNP 179882 to 180482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,065 DEBUG Processing 122/564 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,148 DEBUG Processing 324/667 atomic regions from SNP 97188 to 97788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,165 DEBUG Processing 239/601 atomic regions from SNP 71425 to 72025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,261 DEBUG Processing 689/721 atomic regions from SNP 206550 to 207150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,268 DEBUG Processing 601/680 atomic regions from SNP 180182 to 180782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,282 DEBUG Processing 123/564 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,371 DEBUG Processing 325/667 atomic regions from SNP 97488 to 98088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,379 DEBUG Processing 240/601 atomic regions from SNP 71725 to 72325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,513 DEBUG Processing 124/564 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,515 DEBUG Processing 602/680 atomic regions from SNP 180482 to 181082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,543 DEBUG Processing 690/721 atomic regions from SNP 206850 to 207450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,597 DEBUG Processing 326/667 atomic regions from SNP 97788 to 98388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,600 DEBUG Processing 241/601 atomic regions from SNP 72025 to 72625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,733 DEBUG Processing 125/564 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,756 DEBUG Processing 603/680 atomic regions from SNP 180782 to 181382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,808 DEBUG Processing 691/721 atomic regions from SNP 207150 to 207750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,818 DEBUG Processing 242/601 atomic regions from SNP 72325 to 72925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,824 DEBUG Processing 327/667 atomic regions from SNP 98088 to 98688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,952 DEBUG Processing 126/564 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,010 DEBUG Processing 604/680 atomic regions from SNP 181082 to 181682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,033 DEBUG Processing 243/601 atomic regions from SNP 72625 to 73225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,056 DEBUG Processing 328/667 atomic regions from SNP 98388 to 98988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,074 DEBUG Processing 692/721 atomic regions from SNP 207450 to 208050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,174 DEBUG Processing 127/564 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,250 DEBUG Processing 605/680 atomic regions from SNP 181382 to 181982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,257 DEBUG Processing 244/601 atomic regions from SNP 72925 to 73525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,289 DEBUG Processing 329/667 atomic regions from SNP 98688 to 99288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,335 DEBUG Processing 693/721 atomic regions from SNP 207750 to 208350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,399 DEBUG Processing 128/564 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,484 DEBUG Processing 245/601 atomic regions from SNP 73225 to 73825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,486 DEBUG Processing 606/680 atomic regions from SNP 181682 to 182282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,521 DEBUG Processing 330/667 atomic regions from SNP 98988 to 99588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,599 DEBUG Processing 694/721 atomic regions from SNP 208050 to 208650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,622 DEBUG Processing 129/564 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,702 DEBUG Processing 246/601 atomic regions from SNP 73525 to 74125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,713 DEBUG Processing 607/680 atomic regions from SNP 181982 to 182582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,747 DEBUG Processing 331/667 atomic regions from SNP 99288 to 99888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,845 DEBUG Processing 130/564 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,857 DEBUG Processing 695/721 atomic regions from SNP 208350 to 208950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,925 DEBUG Processing 247/601 atomic regions from SNP 73825 to 74425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,944 DEBUG Processing 608/680 atomic regions from SNP 182282 to 182882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,976 DEBUG Processing 332/667 atomic regions from SNP 99588 to 100188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,066 DEBUG Processing 131/564 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,116 DEBUG Processing 696/721 atomic regions from SNP 208650 to 209250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,149 DEBUG Processing 248/601 atomic regions from SNP 74125 to 74725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,177 DEBUG Processing 609/680 atomic regions from SNP 182582 to 183182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,201 DEBUG Processing 333/667 atomic regions from SNP 99888 to 100488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,282 DEBUG Processing 132/564 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,370 DEBUG Processing 249/601 atomic regions from SNP 74425 to 75025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,383 DEBUG Processing 697/721 atomic regions from SNP 208950 to 209550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,408 DEBUG Processing 610/680 atomic regions from SNP 182882 to 183482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,428 DEBUG Processing 334/667 atomic regions from SNP 100188 to 100788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,494 DEBUG Processing 133/564 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,585 DEBUG Processing 250/601 atomic regions from SNP 74725 to 75325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,636 DEBUG Processing 698/721 atomic regions from SNP 209250 to 209850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,642 DEBUG Processing 611/680 atomic regions from SNP 183182 to 183782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,655 DEBUG Processing 335/667 atomic regions from SNP 100488 to 101088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,713 DEBUG Processing 134/564 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,810 DEBUG Processing 251/601 atomic regions from SNP 75025 to 75625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,892 DEBUG Processing 336/667 atomic regions from SNP 100788 to 101388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,894 DEBUG Processing 699/721 atomic regions from SNP 209550 to 210150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,904 DEBUG Processing 612/680 atomic regions from SNP 183482 to 184082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,940 DEBUG Processing 135/564 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,018 DEBUG Processing 252/601 atomic regions from SNP 75325 to 75925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,122 DEBUG Processing 337/667 atomic regions from SNP 101088 to 101688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,138 DEBUG Processing 613/680 atomic regions from SNP 183782 to 184382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,154 DEBUG Processing 700/721 atomic regions from SNP 209850 to 210450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,161 DEBUG Processing 136/564 atomic regions from SNP 40635 to 41236 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,229 DEBUG Processing 253/601 atomic regions from SNP 75625 to 76225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,353 DEBUG Processing 338/667 atomic regions from SNP 101388 to 101988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,370 DEBUG Processing 614/680 atomic regions from SNP 184082 to 184682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,389 DEBUG Processing 137/564 atomic regions from SNP 40936 to 41537 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,421 DEBUG Processing 701/721 atomic regions from SNP 210150 to 210750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,452 DEBUG Processing 254/601 atomic regions from SNP 75925 to 76525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,593 DEBUG Processing 339/667 atomic regions from SNP 101688 to 102288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,606 DEBUG Processing 615/680 atomic regions from SNP 184382 to 184982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,640 DEBUG Processing 138/564 atomic regions from SNP 41237 to 41838 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,680 DEBUG Processing 702/721 atomic regions from SNP 210450 to 211050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,685 DEBUG Processing 255/601 atomic regions from SNP 76225 to 76825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,850 DEBUG Processing 340/667 atomic regions from SNP 101988 to 102588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,866 DEBUG Processing 616/680 atomic regions from SNP 184682 to 185282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,894 DEBUG Processing 139/564 atomic regions from SNP 41538 to 42139 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,922 DEBUG Processing 256/601 atomic regions from SNP 76525 to 77125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,936 DEBUG Processing 703/721 atomic regions from SNP 210750 to 211350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,089 DEBUG Processing 341/667 atomic regions from SNP 102288 to 102888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,111 DEBUG Processing 617/680 atomic regions from SNP 184982 to 185582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,132 DEBUG Processing 140/564 atomic regions from SNP 41839 to 42440 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,160 DEBUG Processing 257/601 atomic regions from SNP 76825 to 77425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,193 DEBUG Processing 704/721 atomic regions from SNP 211050 to 211650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,320 DEBUG Processing 342/667 atomic regions from SNP 102588 to 103188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,350 DEBUG Processing 618/680 atomic regions from SNP 185282 to 185882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,361 DEBUG Processing 141/564 atomic regions from SNP 42140 to 42741 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,387 DEBUG Processing 258/601 atomic regions from SNP 77125 to 77725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,447 DEBUG Processing 705/721 atomic regions from SNP 211350 to 211950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,546 DEBUG Processing 343/667 atomic regions from SNP 102888 to 103488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,577 DEBUG Processing 619/680 atomic regions from SNP 185582 to 186182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,583 DEBUG Processing 142/564 atomic regions from SNP 42441 to 43042 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,611 DEBUG Processing 259/601 atomic regions from SNP 77425 to 78025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,700 DEBUG Processing 706/721 atomic regions from SNP 211650 to 212250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,763 DEBUG Processing 344/667 atomic regions from SNP 103188 to 103788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,794 DEBUG Processing 143/564 atomic regions from SNP 42742 to 43343 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,814 DEBUG Processing 620/680 atomic regions from SNP 185882 to 186482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,831 DEBUG Processing 260/601 atomic regions from SNP 77725 to 78325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,946 DEBUG Processing 707/721 atomic regions from SNP 211950 to 212550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,981 DEBUG Processing 345/667 atomic regions from SNP 103488 to 104088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,013 DEBUG Processing 144/564 atomic regions from SNP 43043 to 43644 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,051 DEBUG Processing 261/601 atomic regions from SNP 78025 to 78625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,069 DEBUG Processing 621/680 atomic regions from SNP 186182 to 186782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,196 DEBUG Processing 708/721 atomic regions from SNP 212250 to 212850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,205 DEBUG Processing 346/667 atomic regions from SNP 103788 to 104388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,226 DEBUG Processing 145/564 atomic regions from SNP 43344 to 43945 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,266 DEBUG Processing 262/601 atomic regions from SNP 78325 to 78925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,321 DEBUG Processing 622/680 atomic regions from SNP 186482 to 187082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,432 DEBUG Processing 347/667 atomic regions from SNP 104088 to 104688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,436 DEBUG Processing 709/721 atomic regions from SNP 212550 to 213150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,442 DEBUG Processing 146/564 atomic regions from SNP 43645 to 44246 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,483 DEBUG Processing 263/601 atomic regions from SNP 78625 to 79225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,553 DEBUG Processing 623/680 atomic regions from SNP 186782 to 187382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,658 DEBUG Processing 348/667 atomic regions from SNP 104388 to 104988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,676 DEBUG Processing 147/564 atomic regions from SNP 43946 to 44547 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,689 DEBUG Processing 710/721 atomic regions from SNP 212850 to 213450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,704 DEBUG Processing 264/601 atomic regions from SNP 78925 to 79525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,782 DEBUG Processing 624/680 atomic regions from SNP 187082 to 187682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,890 DEBUG Processing 349/667 atomic regions from SNP 104688 to 105288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,891 DEBUG Processing 148/564 atomic regions from SNP 44247 to 44848 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,920 DEBUG Processing 265/601 atomic regions from SNP 79225 to 79825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,945 DEBUG Processing 711/721 atomic regions from SNP 213150 to 213750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,009 DEBUG Processing 625/680 atomic regions from SNP 187382 to 187982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,107 DEBUG Processing 149/564 atomic regions from SNP 44548 to 45149 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,119 DEBUG Processing 350/667 atomic regions from SNP 104988 to 105588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,138 DEBUG Processing 266/601 atomic regions from SNP 79525 to 80125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,207 DEBUG Processing 712/721 atomic regions from SNP 213450 to 214050 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,236 DEBUG Processing 626/680 atomic regions from SNP 187682 to 188282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,323 DEBUG Processing 150/564 atomic regions from SNP 44849 to 45450 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,345 DEBUG Processing 351/667 atomic regions from SNP 105288 to 105888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,360 DEBUG Processing 267/601 atomic regions from SNP 79825 to 80425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,465 DEBUG Processing 627/680 atomic regions from SNP 187982 to 188582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,476 DEBUG Processing 713/721 atomic regions from SNP 213750 to 214350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,552 DEBUG Processing 151/564 atomic regions from SNP 45150 to 45751 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,580 DEBUG Processing 352/667 atomic regions from SNP 105588 to 106188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,583 DEBUG Processing 268/601 atomic regions from SNP 80125 to 80725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,691 DEBUG Processing 628/680 atomic regions from SNP 188282 to 188882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,750 DEBUG Processing 714/721 atomic regions from SNP 214050 to 214650 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,778 DEBUG Processing 152/564 atomic regions from SNP 45451 to 46052 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,813 DEBUG Processing 269/601 atomic regions from SNP 80425 to 81025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,815 DEBUG Processing 353/667 atomic regions from SNP 105888 to 106488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,916 DEBUG Processing 629/680 atomic regions from SNP 188582 to 189182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,999 DEBUG Processing 153/564 atomic regions from SNP 45752 to 46353 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,025 DEBUG Processing 715/721 atomic regions from SNP 214350 to 214950 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,038 DEBUG Processing 270/601 atomic regions from SNP 80725 to 81325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,048 DEBUG Processing 354/667 atomic regions from SNP 106188 to 106788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,139 DEBUG Processing 630/680 atomic regions from SNP 188882 to 189482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,210 DEBUG Processing 154/564 atomic regions from SNP 46053 to 46654 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,258 DEBUG Processing 271/601 atomic regions from SNP 81025 to 81625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,276 DEBUG Processing 355/667 atomic regions from SNP 106488 to 107088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,296 DEBUG Processing 716/721 atomic regions from SNP 214650 to 215250 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,371 DEBUG Processing 631/680 atomic regions from SNP 189182 to 189782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,418 DEBUG Processing 155/564 atomic regions from SNP 46354 to 46955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,474 DEBUG Processing 272/601 atomic regions from SNP 81325 to 81925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,512 DEBUG Processing 356/667 atomic regions from SNP 106788 to 107388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,567 DEBUG Processing 717/721 atomic regions from SNP 214950 to 215550 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,636 DEBUG Processing 156/564 atomic regions from SNP 46655 to 47256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,643 DEBUG Processing 632/680 atomic regions from SNP 189482 to 190082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,688 DEBUG Processing 273/601 atomic regions from SNP 81625 to 82225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,740 DEBUG Processing 357/667 atomic regions from SNP 107088 to 107688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,831 DEBUG Processing 718/721 atomic regions from SNP 215250 to 215850 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,856 DEBUG Processing 157/564 atomic regions from SNP 46956 to 47557 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,904 DEBUG Processing 274/601 atomic regions from SNP 81925 to 82525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,907 DEBUG Processing 633/680 atomic regions from SNP 189782 to 190382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,964 DEBUG Processing 358/667 atomic regions from SNP 107388 to 107988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,081 DEBUG Processing 158/564 atomic regions from SNP 47257 to 47858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,091 DEBUG Processing 719/721 atomic regions from SNP 215550 to 216150 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,122 DEBUG Processing 275/601 atomic regions from SNP 82225 to 82825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,166 DEBUG Processing 634/680 atomic regions from SNP 190082 to 190682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,190 DEBUG Processing 359/667 atomic regions from SNP 107688 to 108288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,303 DEBUG Processing 159/564 atomic regions from SNP 47558 to 48159 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,344 DEBUG Processing 720/721 atomic regions from SNP 215850 to 216450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,347 DEBUG Processing 276/601 atomic regions from SNP 82525 to 83125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,418 DEBUG Processing 635/680 atomic regions from SNP 190382 to 190982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,430 DEBUG Processing 360/667 atomic regions from SNP 107988 to 108588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,530 DEBUG Processing 160/564 atomic regions from SNP 47859 to 48460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,570 DEBUG Processing 277/601 atomic regions from SNP 82825 to 83425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,588 DEBUG Processing 721/721 atomic regions from SNP 216150 to 216750 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,669 DEBUG Processing 361/667 atomic regions from SNP 108288 to 108888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,673 DEBUG Processing 636/680 atomic regions from SNP 190682 to 191282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,742 DEBUG Unique SNPs positions in subchromosome 1: 216751 2025-01-31 09:56:59,758 DEBUG Processing 161/564 atomic regions from SNP 48160 to 48761 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,796 DEBUG Processing 278/601 atomic regions from SNP 83125 to 83725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,910 DEBUG Processing 362/667 atomic regions from SNP 108588 to 109188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,925 DEBUG Processing 637/680 atomic regions from SNP 190982 to 191582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,984 DEBUG Processing 162/564 atomic regions from SNP 48461 to 49062 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,017 DEBUG Processing 279/601 atomic regions from SNP 83425 to 84025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,173 DEBUG Processing 363/667 atomic regions from SNP 108888 to 109488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,180 DEBUG Processing 638/680 atomic regions from SNP 191282 to 191882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,211 DEBUG Processing 163/564 atomic regions from SNP 48762 to 49363 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,234 DEBUG Processing 280/601 atomic regions from SNP 83725 to 84325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,439 DEBUG Processing 164/564 atomic regions from SNP 49063 to 49664 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,444 DEBUG Processing 639/680 atomic regions from SNP 191582 to 192182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,444 DEBUG Processing 364/667 atomic regions from SNP 109188 to 109788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,457 DEBUG Processing 281/601 atomic regions from SNP 84025 to 84625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,685 DEBUG Processing 165/564 atomic regions from SNP 49364 to 49965 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,691 DEBUG Processing 282/601 atomic regions from SNP 84325 to 84925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,702 DEBUG Processing 365/667 atomic regions from SNP 109488 to 110088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,708 DEBUG Processing 640/680 atomic regions from SNP 191882 to 192482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,913 DEBUG Processing 166/564 atomic regions from SNP 49665 to 50266 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,919 DEBUG Processing 283/601 atomic regions from SNP 84625 to 85225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,947 DEBUG Processing 366/667 atomic regions from SNP 109788 to 110388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,949 DEBUG Processing 641/680 atomic regions from SNP 192182 to 192782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,141 DEBUG Processing 167/564 atomic regions from SNP 49966 to 50567 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,150 DEBUG Processing 284/601 atomic regions from SNP 84925 to 85525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,193 DEBUG Processing 642/680 atomic regions from SNP 192482 to 193082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,205 DEBUG Processing 367/667 atomic regions from SNP 110088 to 110688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,372 DEBUG Processing 285/601 atomic regions from SNP 85225 to 85825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,376 DEBUG Processing 168/564 atomic regions from SNP 50267 to 50868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,429 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:57:01,431 DEBUG chr17: Signal quantile: 0.990. signal threshold: 17. Best RMSEA: 0.019 2025-01-31 09:57:01,431 DEBUG Processing 643/680 atomic regions from SNP 192782 to 193382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,450 DEBUG Processing 368/667 atomic regions from SNP 110388 to 110988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,591 DEBUG Processing 286/601 atomic regions from SNP 85525 to 86125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,610 DEBUG Processing 169/564 atomic regions from SNP 50568 to 51169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,676 DEBUG Processing 644/680 atomic regions from SNP 193082 to 193682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,704 DEBUG Processing 369/667 atomic regions from SNP 110688 to 111288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,805 DEBUG Processing 287/601 atomic regions from SNP 85825 to 86425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,832 DEBUG Processing 170/564 atomic regions from SNP 50869 to 51470 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,925 DEBUG Processing 645/680 atomic regions from SNP 193382 to 193982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,952 DEBUG Processing 370/667 atomic regions from SNP 110988 to 111588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,018 DEBUG Processing 288/601 atomic regions from SNP 86125 to 86725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,054 DEBUG Processing 171/564 atomic regions from SNP 51170 to 51771 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,183 DEBUG Processing 646/680 atomic regions from SNP 193682 to 194282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,196 DEBUG Processing 371/667 atomic regions from SNP 111288 to 111888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,246 DEBUG Processing 289/601 atomic regions from SNP 86425 to 87025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,270 DEBUG Processing 172/564 atomic regions from SNP 51471 to 52072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,421 DEBUG Processing 647/680 atomic regions from SNP 193982 to 194582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,431 DEBUG Processing 372/667 atomic regions from SNP 111588 to 112188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,468 DEBUG Processing 290/601 atomic regions from SNP 86725 to 87325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,496 DEBUG Processing 173/564 atomic regions from SNP 51772 to 52372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,656 DEBUG Processing 648/680 atomic regions from SNP 194282 to 194882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,665 DEBUG Processing 373/667 atomic regions from SNP 111888 to 112488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,694 DEBUG Processing 291/601 atomic regions from SNP 87025 to 87625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,732 DEBUG Processing 174/564 atomic regions from SNP 52072 to 52672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,892 DEBUG Processing 649/680 atomic regions from SNP 194582 to 195182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,915 DEBUG Processing 374/667 atomic regions from SNP 112188 to 112788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,923 DEBUG Processing 292/601 atomic regions from SNP 87325 to 87925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,961 DEBUG Processing 175/564 atomic regions from SNP 52372 to 52972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,123 DEBUG Processing 650/680 atomic regions from SNP 194882 to 195482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,144 DEBUG Processing 293/601 atomic regions from SNP 87625 to 88225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,178 DEBUG Processing 375/667 atomic regions from SNP 112488 to 113088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,198 DEBUG Processing 176/564 atomic regions from SNP 52672 to 53272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,292 DEBUG chr17 total SNP count: 161357 2025-01-31 09:57:03,292 DEBUG chr17 length: 94987271 2025-01-31 09:57:03,292 DEBUG ----------------------------------------- 2025-01-31 09:57:03,292 INFO Processing SNPs in chr17 2025-01-31 09:57:03,356 DEBUG Processing 651/680 atomic regions from SNP 195182 to 195782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,364 DEBUG Processing 294/601 atomic regions from SNP 87925 to 88525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,410 DEBUG Processing 376/667 atomic regions from SNP 112788 to 113388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,455 DEBUG Processing 177/564 atomic regions from SNP 52972 to 53572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,456 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 161357)] 2025-01-31 09:57:03,568 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:03,574 DEBUG Processing 295/601 atomic regions from SNP 88225 to 88825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,576 DEBUG Processing 652/680 atomic regions from SNP 195482 to 196082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,636 DEBUG Processing 377/667 atomic regions from SNP 113088 to 113688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,699 DEBUG Processing 178/564 atomic regions from SNP 53272 to 53872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,783 DEBUG Processing 296/601 atomic regions from SNP 88525 to 89125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,799 DEBUG Processing 653/680 atomic regions from SNP 195782 to 196382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,861 DEBUG Processing 378/667 atomic regions from SNP 113388 to 113988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,934 DEBUG Processing 179/564 atomic regions from SNP 53572 to 54172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,019 DEBUG Processing 297/601 atomic regions from SNP 88825 to 89425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,023 DEBUG Processing 654/680 atomic regions from SNP 196082 to 196682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,092 DEBUG Processing 379/667 atomic regions from SNP 113688 to 114288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,176 DEBUG Processing 180/564 atomic regions from SNP 53872 to 54472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,237 DEBUG Processing 298/601 atomic regions from SNP 89125 to 89725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,250 DEBUG Processing 655/680 atomic regions from SNP 196382 to 196982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,337 DEBUG Processing 380/667 atomic regions from SNP 113988 to 114588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,412 DEBUG Processing 181/564 atomic regions from SNP 54172 to 54772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,462 DEBUG Processing 299/601 atomic regions from SNP 89425 to 90025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,488 DEBUG Processing 656/680 atomic regions from SNP 196682 to 197282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,585 DEBUG Processing 381/667 atomic regions from SNP 114288 to 114888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,644 DEBUG Processing 182/564 atomic regions from SNP 54472 to 55072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,685 DEBUG Processing 300/601 atomic regions from SNP 89725 to 90325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,720 DEBUG Processing 657/680 atomic regions from SNP 196982 to 197582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,827 DEBUG Processing 382/667 atomic regions from SNP 114588 to 115188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,857 DEBUG Processing 183/564 atomic regions from SNP 54772 to 55372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,906 DEBUG Processing 301/601 atomic regions from SNP 90025 to 90625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,952 DEBUG Processing 658/680 atomic regions from SNP 197282 to 197882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,054 DEBUG Processing 383/667 atomic regions from SNP 114888 to 115488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,069 DEBUG Processing 184/564 atomic regions from SNP 55072 to 55672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,121 DEBUG Processing 302/601 atomic regions from SNP 90325 to 90925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,180 DEBUG Processing 659/680 atomic regions from SNP 197582 to 198182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,282 DEBUG Processing 384/667 atomic regions from SNP 115188 to 115788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,282 DEBUG Processing 185/564 atomic regions from SNP 55372 to 55972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,332 DEBUG Processing 303/601 atomic regions from SNP 90625 to 91225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,399 DEBUG Processing 660/680 atomic regions from SNP 197882 to 198482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,514 DEBUG Processing 186/564 atomic regions from SNP 55672 to 56272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,528 DEBUG Processing 385/667 atomic regions from SNP 115488 to 116088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,549 DEBUG Processing 304/601 atomic regions from SNP 90925 to 91525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,619 DEBUG Processing 661/680 atomic regions from SNP 198182 to 198782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,748 DEBUG Processing 187/564 atomic regions from SNP 55972 to 56572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,773 DEBUG Processing 305/601 atomic regions from SNP 91225 to 91825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,776 DEBUG Processing 386/667 atomic regions from SNP 115788 to 116388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,838 DEBUG Processing 662/680 atomic regions from SNP 198482 to 199082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,974 DEBUG Processing 188/564 atomic regions from SNP 56272 to 56872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,002 DEBUG Processing 306/601 atomic regions from SNP 91525 to 92125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,015 DEBUG Processing 387/667 atomic regions from SNP 116088 to 116688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,068 DEBUG Processing 663/680 atomic regions from SNP 198782 to 199382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,192 DEBUG Processing 189/564 atomic regions from SNP 56572 to 57172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,225 DEBUG Processing 307/601 atomic regions from SNP 91825 to 92425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,242 DEBUG Processing 388/667 atomic regions from SNP 116388 to 116988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,293 DEBUG Processing 664/680 atomic regions from SNP 199082 to 199682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,407 DEBUG Processing 190/564 atomic regions from SNP 56872 to 57472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,446 DEBUG Processing 308/601 atomic regions from SNP 92125 to 92725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,477 DEBUG Processing 389/667 atomic regions from SNP 116688 to 117288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,522 DEBUG Processing 665/680 atomic regions from SNP 199382 to 199982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,617 DEBUG Processing 191/564 atomic regions from SNP 57172 to 57772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,665 DEBUG Processing 309/601 atomic regions from SNP 92425 to 93025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,713 DEBUG Processing 390/667 atomic regions from SNP 116988 to 117588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,751 DEBUG Processing 666/680 atomic regions from SNP 199682 to 200282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,822 DEBUG Processing 192/564 atomic regions from SNP 57472 to 58072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,883 DEBUG Processing 310/601 atomic regions from SNP 92725 to 93325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,948 DEBUG Processing 391/667 atomic regions from SNP 117288 to 117888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,983 DEBUG Processing 667/680 atomic regions from SNP 199982 to 200582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,028 DEBUG Processing 193/564 atomic regions from SNP 57772 to 58372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,093 DEBUG Processing 311/601 atomic regions from SNP 93025 to 93625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,176 DEBUG Processing 392/667 atomic regions from SNP 117588 to 118188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,216 DEBUG Processing 668/680 atomic regions from SNP 200282 to 200882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,237 DEBUG Processing 194/564 atomic regions from SNP 58072 to 58672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,297 DEBUG Processing 312/601 atomic regions from SNP 93325 to 93925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,411 DEBUG Processing 393/667 atomic regions from SNP 117888 to 118488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,447 DEBUG Processing 669/680 atomic regions from SNP 200582 to 201182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,458 DEBUG Processing 195/564 atomic regions from SNP 58372 to 58972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,506 DEBUG Processing 313/601 atomic regions from SNP 93625 to 94225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,642 DEBUG Processing 394/667 atomic regions from SNP 118188 to 118788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,684 DEBUG Processing 670/680 atomic regions from SNP 200882 to 201482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,686 DEBUG Processing 196/564 atomic regions from SNP 58672 to 59272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,734 DEBUG Processing 314/601 atomic regions from SNP 93925 to 94525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,872 DEBUG Processing 395/667 atomic regions from SNP 118488 to 119088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,921 DEBUG Processing 671/680 atomic regions from SNP 201182 to 201782 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,921 DEBUG Processing 197/564 atomic regions from SNP 58972 to 59572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,953 DEBUG Processing 315/601 atomic regions from SNP 94225 to 94825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,097 DEBUG Processing 396/667 atomic regions from SNP 118788 to 119388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,156 DEBUG Processing 672/680 atomic regions from SNP 201482 to 202082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,157 DEBUG Processing 198/564 atomic regions from SNP 59272 to 59872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,174 DEBUG Processing 316/601 atomic regions from SNP 94525 to 95125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,318 DEBUG Processing 397/667 atomic regions from SNP 119088 to 119688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,395 DEBUG Processing 673/680 atomic regions from SNP 201782 to 202382 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,396 DEBUG Processing 317/601 atomic regions from SNP 94825 to 95425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,399 DEBUG Processing 199/564 atomic regions from SNP 59572 to 60172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,538 DEBUG Processing 398/667 atomic regions from SNP 119388 to 119988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,624 DEBUG Processing 318/601 atomic regions from SNP 95125 to 95725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,628 DEBUG Processing 200/564 atomic regions from SNP 59872 to 60472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,631 DEBUG Processing 674/680 atomic regions from SNP 202082 to 202682 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,752 DEBUG Processing 399/667 atomic regions from SNP 119688 to 120288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,852 DEBUG Processing 201/564 atomic regions from SNP 60172 to 60772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,852 DEBUG Processing 319/601 atomic regions from SNP 95425 to 96025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,869 DEBUG Processing 675/680 atomic regions from SNP 202382 to 202982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,969 DEBUG Processing 400/667 atomic regions from SNP 119988 to 120588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,068 DEBUG Processing 202/564 atomic regions from SNP 60472 to 61072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,072 DEBUG Processing 320/601 atomic regions from SNP 95725 to 96325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,099 DEBUG Processing 676/680 atomic regions from SNP 202682 to 203282 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,189 DEBUG Processing 401/667 atomic regions from SNP 120288 to 120888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,284 DEBUG Processing 203/564 atomic regions from SNP 60772 to 61372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,295 DEBUG Processing 321/601 atomic regions from SNP 96025 to 96625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,328 DEBUG Processing 677/680 atomic regions from SNP 202982 to 203582 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,410 DEBUG Processing 402/667 atomic regions from SNP 120588 to 121188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,501 DEBUG Processing 204/564 atomic regions from SNP 61072 to 61672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,540 DEBUG Processing 322/601 atomic regions from SNP 96325 to 96925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,553 DEBUG Processing 678/680 atomic regions from SNP 203282 to 203882 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,657 DEBUG Processing 403/667 atomic regions from SNP 120888 to 121488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,720 DEBUG Processing 205/564 atomic regions from SNP 61372 to 61972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,777 DEBUG Processing 323/601 atomic regions from SNP 96625 to 97225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,800 DEBUG Processing 679/680 atomic regions from SNP 203582 to 204182 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,903 DEBUG Processing 404/667 atomic regions from SNP 121188 to 121788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,929 DEBUG Processing 206/564 atomic regions from SNP 61672 to 62272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,996 DEBUG Processing 324/601 atomic regions from SNP 96925 to 97525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,061 DEBUG Processing 680/680 atomic regions from SNP 203882 to 204482 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,115 DEBUG Processing 405/667 atomic regions from SNP 121488 to 122088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,134 DEBUG Processing 207/564 atomic regions from SNP 61972 to 62572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,213 DEBUG Processing 325/601 atomic regions from SNP 97225 to 97825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,230 DEBUG Unique SNPs positions in subchromosome 1: 204483 2025-01-31 09:57:10,336 DEBUG Processing 406/667 atomic regions from SNP 121788 to 122388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,344 DEBUG Processing 208/564 atomic regions from SNP 62272 to 62872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,429 DEBUG Processing 326/601 atomic regions from SNP 97525 to 98125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,572 DEBUG Processing 209/564 atomic regions from SNP 62572 to 63172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,573 DEBUG Processing 407/667 atomic regions from SNP 122088 to 122688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,650 DEBUG Processing 327/601 atomic regions from SNP 97825 to 98425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,784 DEBUG Processing 210/564 atomic regions from SNP 62872 to 63472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,813 DEBUG Processing 408/667 atomic regions from SNP 122388 to 122988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,871 DEBUG Processing 328/601 atomic regions from SNP 98125 to 98725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,016 DEBUG Processing 211/564 atomic regions from SNP 63172 to 63772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,056 DEBUG Processing 409/667 atomic regions from SNP 122688 to 123288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,104 DEBUG Processing 329/601 atomic regions from SNP 98425 to 99025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,243 DEBUG Processing 212/564 atomic regions from SNP 63472 to 64072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,308 DEBUG Processing 410/667 atomic regions from SNP 122988 to 123588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,326 DEBUG Processing 330/601 atomic regions from SNP 98725 to 99325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,453 DEBUG Processing 213/564 atomic regions from SNP 63772 to 64372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,540 DEBUG Processing 331/601 atomic regions from SNP 99025 to 99625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,579 DEBUG Processing 411/667 atomic regions from SNP 123288 to 123888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,677 DEBUG Processing 214/564 atomic regions from SNP 64072 to 64672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,747 DEBUG Processing 332/601 atomic regions from SNP 99325 to 99925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,818 DEBUG Processing 412/667 atomic regions from SNP 123588 to 124188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,892 DEBUG Processing 215/564 atomic regions from SNP 64372 to 64972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,957 DEBUG Processing 333/601 atomic regions from SNP 99625 to 100225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,036 DEBUG Processing 413/667 atomic regions from SNP 123888 to 124488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,116 DEBUG Processing 216/564 atomic regions from SNP 64672 to 65272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,164 DEBUG Processing 334/601 atomic regions from SNP 99925 to 100525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,251 DEBUG Processing 414/667 atomic regions from SNP 124188 to 124788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,327 DEBUG Processing 217/564 atomic regions from SNP 64972 to 65572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,372 DEBUG Processing 335/601 atomic regions from SNP 100225 to 100825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,469 DEBUG Processing 415/667 atomic regions from SNP 124488 to 125088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,532 DEBUG Processing 218/564 atomic regions from SNP 65272 to 65872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,586 DEBUG Processing 336/601 atomic regions from SNP 100525 to 101125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,689 DEBUG Processing 416/667 atomic regions from SNP 124788 to 125388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,746 DEBUG Processing 219/564 atomic regions from SNP 65572 to 66172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,799 DEBUG Processing 337/601 atomic regions from SNP 100825 to 101425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,905 DEBUG Processing 417/667 atomic regions from SNP 125088 to 125688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,960 DEBUG Processing 220/564 atomic regions from SNP 65872 to 66472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,014 DEBUG Processing 338/601 atomic regions from SNP 101125 to 101725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,116 DEBUG Processing 418/667 atomic regions from SNP 125388 to 125988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,166 DEBUG Processing 221/564 atomic regions from SNP 66172 to 66772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,228 DEBUG Processing 339/601 atomic regions from SNP 101425 to 102025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,328 DEBUG Processing 419/667 atomic regions from SNP 125688 to 126288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,374 DEBUG Processing 222/564 atomic regions from SNP 66472 to 67072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,444 DEBUG Processing 340/601 atomic regions from SNP 101725 to 102325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,546 DEBUG Processing 420/667 atomic regions from SNP 125988 to 126588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,580 DEBUG Processing 223/564 atomic regions from SNP 66772 to 67372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,661 DEBUG Processing 341/601 atomic regions from SNP 102025 to 102625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,761 DEBUG Processing 421/667 atomic regions from SNP 126288 to 126888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,782 DEBUG Processing 224/564 atomic regions from SNP 67072 to 67672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,870 DEBUG Processing 342/601 atomic regions from SNP 102325 to 102925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,985 DEBUG Processing 225/564 atomic regions from SNP 67372 to 67972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,985 DEBUG Processing 422/667 atomic regions from SNP 126588 to 127188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,080 DEBUG Processing 343/601 atomic regions from SNP 102625 to 103225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,193 DEBUG Processing 226/564 atomic regions from SNP 67672 to 68272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,236 DEBUG Processing 423/667 atomic regions from SNP 126888 to 127488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,288 DEBUG Processing 344/601 atomic regions from SNP 102925 to 103525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,394 DEBUG Processing 227/564 atomic regions from SNP 67972 to 68572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,460 DEBUG Processing 424/667 atomic regions from SNP 127188 to 127788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,494 DEBUG Processing 345/601 atomic regions from SNP 103225 to 103825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,597 DEBUG Processing 228/564 atomic regions from SNP 68272 to 68872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,696 DEBUG Processing 425/667 atomic regions from SNP 127488 to 128088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,703 DEBUG Processing 346/601 atomic regions from SNP 103525 to 104125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,793 DEBUG Processing 229/564 atomic regions from SNP 68572 to 69172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,910 DEBUG Processing 347/601 atomic regions from SNP 103825 to 104425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,916 DEBUG Processing 426/667 atomic regions from SNP 127788 to 128388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,993 DEBUG Processing 230/564 atomic regions from SNP 68872 to 69472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,114 DEBUG Processing 348/601 atomic regions from SNP 104125 to 104725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,134 DEBUG Processing 427/667 atomic regions from SNP 128088 to 128688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,197 DEBUG Processing 231/564 atomic regions from SNP 69172 to 69772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,323 DEBUG Subchromosome time: 189.26314397796523, subchromosome SNPs: 204483 2025-01-31 09:57:15,323 DEBUG Estimated BADs: [1.08, 4.30, 17.21, 0.72, 21.51, 2.15, 0.43, 2.15, 4.30, 2.15, 6.45, 2.15, 4.30, 2.15, 4.30, 2.15, 6.45, 2.15, 0.72, 4.30, 15.06, 1.08, 15.06, 0.72, 4.30, 2.15, 4.30, 2.15, 1.08, 4.30] SNP counts: [30774, 996, 573, 1765, 875, 3032, 4518, 27318, 11737, 8792, 2313, 4496, 5992, 2389, 3844, 11432, 1303, 7430, 4590, 1424, 281, 3382, 91, 12317, 19877, 18087, 2068, 4820, 7180, 787] SNP IDs counts: [30774, 996, 573, 1765, 875, 3032, 4518, 27318, 11737, 8792, 2313, 4496, 5992, 2389, 3844, 11432, 1303, 7430, 4590, 1424, 281, 3382, 91, 12317, 19877, 18087, 2068, 4820, 7180, 787] Critical gap: 595876bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 21.16Mbp, 21.71Mbp, 22.06Mbp, 23.28Mbp, 23.77Mbp, 25.42Mbp, 28.05Mbp, 43.13Mbp, 49.31Mbp, 54.44Mbp, 55.66Mbp, 58.01Mbp, 61.26Mbp, 63.16Mbp, 65.28Mbp, 73.25Mbp, 73.93Mbp, 78.21Mbp, 80.86Mbp, 81.63Mbp, 81.78Mbp, 83.69Mbp, 83.74Mbp, 90.89Mbp, 101.69Mbp, 111.68Mbp, 112.77Mbp, 115.37Mbp, 119.43Mbp, 120.42Mbp] 2025-01-31 09:57:15,324 DEBUG chr13 time: 189.26370245101862 s 2025-01-31 09:57:15,325 DEBUG Processing 349/601 atomic regions from SNP 104425 to 105025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,351 DEBUG Processing 428/667 atomic regions from SNP 128388 to 128988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,400 DEBUG Processing 232/564 atomic regions from SNP 69472 to 70072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,450 DEBUG chr13: Fitting background model for 30 segments 2025-01-31 09:57:15,532 DEBUG Processing 350/601 atomic regions from SNP 104725 to 105325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,568 DEBUG Processing 429/667 atomic regions from SNP 128688 to 129288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,605 DEBUG Processing 233/564 atomic regions from SNP 69772 to 70372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,737 DEBUG Processing 351/601 atomic regions from SNP 105025 to 105625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,790 DEBUG Processing 430/667 atomic regions from SNP 128988 to 129588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,809 DEBUG Processing 234/564 atomic regions from SNP 70072 to 70672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,943 DEBUG Processing 352/601 atomic regions from SNP 105325 to 105925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,014 DEBUG Processing 235/564 atomic regions from SNP 70372 to 70972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,039 DEBUG Processing 431/667 atomic regions from SNP 129288 to 129888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,146 DEBUG Processing 353/601 atomic regions from SNP 105625 to 106225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,222 DEBUG Processing 236/564 atomic regions from SNP 70672 to 71272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,268 DEBUG Processing 432/667 atomic regions from SNP 129588 to 130188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,352 DEBUG Processing 354/601 atomic regions from SNP 105925 to 106525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,429 DEBUG Processing 237/564 atomic regions from SNP 70972 to 71572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,508 DEBUG Processing 433/667 atomic regions from SNP 129888 to 130488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,560 DEBUG Processing 355/601 atomic regions from SNP 106225 to 106825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,637 DEBUG Processing 238/564 atomic regions from SNP 71272 to 71872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,753 DEBUG Processing 434/667 atomic regions from SNP 130188 to 130788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,761 DEBUG Processing 356/601 atomic regions from SNP 106525 to 107125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,841 DEBUG Processing 239/564 atomic regions from SNP 71572 to 72172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,966 DEBUG Processing 357/601 atomic regions from SNP 106825 to 107425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,996 DEBUG Processing 435/667 atomic regions from SNP 130488 to 131088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,047 DEBUG Processing 240/564 atomic regions from SNP 71872 to 72472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,171 DEBUG Processing 358/601 atomic regions from SNP 107125 to 107725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,227 DEBUG Processing 436/667 atomic regions from SNP 130788 to 131388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,252 DEBUG Processing 241/564 atomic regions from SNP 72172 to 72772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,373 DEBUG Processing 359/601 atomic regions from SNP 107425 to 108025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,452 DEBUG Processing 437/667 atomic regions from SNP 131088 to 131688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,457 DEBUG Processing 242/564 atomic regions from SNP 72472 to 73072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,578 DEBUG Processing 360/601 atomic regions from SNP 107725 to 108325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,660 DEBUG Processing 243/564 atomic regions from SNP 72772 to 73372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,680 DEBUG Subchromosome time: 219.01735774602275, subchromosome SNPs: 216751 2025-01-31 09:57:17,680 DEBUG Processing 438/667 atomic regions from SNP 131388 to 131988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,681 DEBUG Estimated BADs: [21.51, 4.30, 1.08, 0.36, 0.72, 2.15, 0.54, 2.15, 0.43, 1.08, 15.06, 2.15, 4.30, 2.15, 21.51, 8.60, 2.15, 0.43, 2.15, 21.51, 4.30, 2.15, 0.54, 1.08, 4.30, 2.15, 1.08, 4.30] SNP counts: [149, 6611, 10247, 5651, 4515, 10547, 7221, 14123, 6865, 14836, 187, 17167, 4441, 15383, 312, 3004, 4746, 1122, 1438, 123, 8961, 20987, 4206, 1594, 24234, 6877, 8466, 12738] SNP IDs counts: [149, 6611, 10247, 5651, 4515, 10547, 7221, 14123, 6865, 14836, 187, 17167, 4441, 15383, 312, 3004, 4746, 1122, 1438, 123, 8961, 20987, 4206, 1594, 24234, 6877, 8466, 12738] Critical gap: 586508bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.72Mbp, 12.67Mbp, 16.06Mbp, 18.69Mbp, 24.45Mbp, 28.68Mbp, 36.52Mbp, 40.36Mbp, 48.77Mbp, 48.87Mbp, 58.30Mbp, 60.77Mbp, 68.97Mbp, 69.13Mbp, 70.70Mbp, 73.29Mbp, 74.00Mbp, 74.83Mbp, 74.90Mbp, 79.63Mbp, 90.86Mbp, 93.25Mbp, 94.11Mbp, 106.97Mbp, 110.64Mbp, 115.22Mbp, 122.08Mbp] 2025-01-31 09:57:17,681 DEBUG chr11 time: 219.01796883298084 s 2025-01-31 09:57:17,781 DEBUG Processing 361/601 atomic regions from SNP 108025 to 108625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,819 DEBUG chr11: Fitting background model for 28 segments 2025-01-31 09:57:17,866 DEBUG Processing 244/564 atomic regions from SNP 73072 to 73672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,901 DEBUG Processing 439/667 atomic regions from SNP 131688 to 132288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,986 DEBUG Processing 362/601 atomic regions from SNP 108325 to 108925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,068 DEBUG Processing 245/564 atomic regions from SNP 73372 to 73972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,121 DEBUG Processing 440/667 atomic regions from SNP 131988 to 132588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,196 DEBUG Processing 363/601 atomic regions from SNP 108625 to 109225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,264 DEBUG Processing 246/564 atomic regions from SNP 73672 to 74272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,347 DEBUG Processing 441/667 atomic regions from SNP 132288 to 132888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,412 DEBUG Processing 364/601 atomic regions from SNP 108925 to 109525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,470 DEBUG Processing 247/564 atomic regions from SNP 73972 to 74572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,569 DEBUG Processing 442/667 atomic regions from SNP 132588 to 133188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,630 DEBUG Processing 365/601 atomic regions from SNP 109225 to 109825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,685 DEBUG Processing 248/564 atomic regions from SNP 74272 to 74872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,790 DEBUG Processing 443/667 atomic regions from SNP 132888 to 133488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,844 DEBUG Processing 366/601 atomic regions from SNP 109525 to 110125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,909 DEBUG Processing 249/564 atomic regions from SNP 74572 to 75172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,012 DEBUG Processing 444/667 atomic regions from SNP 133188 to 133788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,060 DEBUG Processing 367/601 atomic regions from SNP 109825 to 110425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,125 DEBUG Processing 250/564 atomic regions from SNP 74872 to 75472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,233 DEBUG Processing 445/667 atomic regions from SNP 133488 to 134088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,276 DEBUG Processing 368/601 atomic regions from SNP 110125 to 110725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,339 DEBUG Processing 251/564 atomic regions from SNP 75172 to 75772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,455 DEBUG Processing 446/667 atomic regions from SNP 133788 to 134388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,489 DEBUG Processing 369/601 atomic regions from SNP 110425 to 111025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,553 DEBUG Processing 252/564 atomic regions from SNP 75472 to 76072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,678 DEBUG Processing 447/667 atomic regions from SNP 134088 to 134688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,705 DEBUG Processing 370/601 atomic regions from SNP 110725 to 111325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,770 DEBUG Processing 253/564 atomic regions from SNP 75772 to 76372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,899 DEBUG Processing 448/667 atomic regions from SNP 134388 to 134988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,917 DEBUG Processing 371/601 atomic regions from SNP 111025 to 111625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,983 DEBUG Processing 254/564 atomic regions from SNP 76072 to 76672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,130 DEBUG Processing 372/601 atomic regions from SNP 111325 to 111925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,141 DEBUG Processing 449/667 atomic regions from SNP 134688 to 135288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,194 DEBUG Processing 255/564 atomic regions from SNP 76372 to 76972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,347 DEBUG Processing 373/601 atomic regions from SNP 111625 to 112225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,381 DEBUG Processing 450/667 atomic regions from SNP 134988 to 135588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,409 DEBUG Processing 256/564 atomic regions from SNP 76672 to 77272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,565 DEBUG Processing 374/601 atomic regions from SNP 111925 to 112525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,616 DEBUG Processing 257/564 atomic regions from SNP 76972 to 77572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,636 DEBUG Processing 451/667 atomic regions from SNP 135288 to 135888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,779 DEBUG Processing 375/601 atomic regions from SNP 112225 to 112825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,832 DEBUG Processing 258/564 atomic regions from SNP 77272 to 77872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,899 DEBUG Processing 452/667 atomic regions from SNP 135588 to 136188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,000 DEBUG Processing 376/601 atomic regions from SNP 112525 to 113125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,042 DEBUG Processing 259/564 atomic regions from SNP 77572 to 78172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,143 DEBUG Processing 453/667 atomic regions from SNP 135888 to 136488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,252 DEBUG Processing 377/601 atomic regions from SNP 112825 to 113425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,260 DEBUG Processing 260/564 atomic regions from SNP 77872 to 78472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,379 DEBUG Processing 454/667 atomic regions from SNP 136188 to 136788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,479 DEBUG Processing 378/601 atomic regions from SNP 113125 to 113725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,484 DEBUG Processing 261/564 atomic regions from SNP 78172 to 78772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,628 DEBUG Processing 455/667 atomic regions from SNP 136488 to 137088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,709 DEBUG Processing 379/601 atomic regions from SNP 113425 to 114025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,712 DEBUG Processing 262/564 atomic regions from SNP 78472 to 79072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,895 DEBUG Processing 456/667 atomic regions from SNP 136788 to 137388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,936 DEBUG Processing 380/601 atomic regions from SNP 113725 to 114325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,937 DEBUG Processing 263/564 atomic regions from SNP 78772 to 79372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,159 DEBUG Processing 264/564 atomic regions from SNP 79072 to 79672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,159 DEBUG Processing 381/601 atomic regions from SNP 114025 to 114625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,159 DEBUG Processing 457/667 atomic regions from SNP 137088 to 137688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,377 DEBUG Processing 265/564 atomic regions from SNP 79372 to 79972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,380 DEBUG Processing 382/601 atomic regions from SNP 114325 to 114925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,416 DEBUG Processing 458/667 atomic regions from SNP 137388 to 137988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,604 DEBUG Processing 383/601 atomic regions from SNP 114625 to 115225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,605 DEBUG Processing 266/564 atomic regions from SNP 79672 to 80272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,661 DEBUG Processing 459/667 atomic regions from SNP 137688 to 138288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,817 DEBUG Processing 267/564 atomic regions from SNP 79972 to 80572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,818 DEBUG Processing 384/601 atomic regions from SNP 114925 to 115525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,907 DEBUG Processing 460/667 atomic regions from SNP 137988 to 138588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,027 DEBUG Processing 268/564 atomic regions from SNP 80272 to 80872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,035 DEBUG Processing 385/601 atomic regions from SNP 115225 to 115825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,143 DEBUG Processing 461/667 atomic regions from SNP 138288 to 138888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,245 DEBUG Processing 269/564 atomic regions from SNP 80572 to 81172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,256 DEBUG Processing 386/601 atomic regions from SNP 115525 to 116125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,386 DEBUG Processing 462/667 atomic regions from SNP 138588 to 139188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,469 DEBUG Processing 270/564 atomic regions from SNP 80872 to 81472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,479 DEBUG Processing 387/601 atomic regions from SNP 115825 to 116425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,485 DEBUG Segmenting atomic regions: 2025-01-31 09:57:23,558 DEBUG Processing 1/536 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,635 DEBUG Processing 463/667 atomic regions from SNP 138888 to 139488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,698 DEBUG Processing 271/564 atomic regions from SNP 81172 to 81772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,706 DEBUG Processing 388/601 atomic regions from SNP 116125 to 116725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,774 DEBUG Processing 2/536 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,897 DEBUG Processing 464/667 atomic regions from SNP 139188 to 139788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,926 DEBUG Processing 272/564 atomic regions from SNP 81472 to 82072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,939 DEBUG Processing 389/601 atomic regions from SNP 116425 to 117025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,985 DEBUG Processing 3/536 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,144 DEBUG Processing 465/667 atomic regions from SNP 139488 to 140088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,153 DEBUG Processing 273/564 atomic regions from SNP 81772 to 82372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,167 DEBUG Processing 390/601 atomic regions from SNP 116725 to 117325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,199 DEBUG Processing 4/536 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,380 DEBUG Processing 274/564 atomic regions from SNP 82072 to 82672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,398 DEBUG Processing 391/601 atomic regions from SNP 117025 to 117625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,401 DEBUG Processing 466/667 atomic regions from SNP 139788 to 140388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,414 DEBUG Processing 5/536 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,608 DEBUG Processing 275/564 atomic regions from SNP 82372 to 82972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,626 DEBUG Processing 392/601 atomic regions from SNP 117325 to 117925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,631 DEBUG Processing 6/536 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,664 DEBUG Processing 467/667 atomic regions from SNP 140088 to 140688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,830 DEBUG Processing 276/564 atomic regions from SNP 82672 to 83272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,845 DEBUG Processing 7/536 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,852 DEBUG Processing 393/601 atomic regions from SNP 117625 to 118225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,916 DEBUG Processing 468/667 atomic regions from SNP 140388 to 140988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,049 DEBUG Processing 277/564 atomic regions from SNP 82972 to 83572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,057 DEBUG Processing 8/536 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,086 DEBUG Processing 394/601 atomic regions from SNP 117925 to 118525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,188 DEBUG Processing 469/667 atomic regions from SNP 140688 to 141288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,262 DEBUG Processing 9/536 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,268 DEBUG Processing 278/564 atomic regions from SNP 83272 to 83872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,313 DEBUG Processing 395/601 atomic regions from SNP 118225 to 118825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,428 DEBUG Processing 470/667 atomic regions from SNP 140988 to 141588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,472 DEBUG Processing 10/536 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,489 DEBUG Processing 279/564 atomic regions from SNP 83572 to 84172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,536 DEBUG Processing 396/601 atomic regions from SNP 118525 to 119125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,666 DEBUG Processing 471/667 atomic regions from SNP 141288 to 141888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,679 DEBUG Processing 11/536 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,706 DEBUG Processing 280/564 atomic regions from SNP 83872 to 84472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,751 DEBUG Processing 397/601 atomic regions from SNP 118825 to 119425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,894 DEBUG Processing 12/536 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,919 DEBUG Processing 472/667 atomic regions from SNP 141588 to 142188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,951 DEBUG Processing 281/564 atomic regions from SNP 84172 to 84772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,974 DEBUG Processing 398/601 atomic regions from SNP 119125 to 119725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,126 DEBUG Processing 13/536 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,192 DEBUG Processing 282/564 atomic regions from SNP 84472 to 85072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,194 DEBUG Processing 473/667 atomic regions from SNP 141888 to 142488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,197 DEBUG Processing 399/601 atomic regions from SNP 119425 to 120025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,351 DEBUG Processing 14/536 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,414 DEBUG Processing 283/564 atomic regions from SNP 84772 to 85372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,422 DEBUG Processing 400/601 atomic regions from SNP 119725 to 120325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,461 DEBUG Processing 474/667 atomic regions from SNP 142188 to 142788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,571 DEBUG Processing 15/536 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,641 DEBUG Processing 284/564 atomic regions from SNP 85072 to 85672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,649 DEBUG Processing 401/601 atomic regions from SNP 120025 to 120625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,723 DEBUG Processing 475/667 atomic regions from SNP 142488 to 143088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,801 DEBUG Processing 16/536 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,866 DEBUG Processing 285/564 atomic regions from SNP 85372 to 85972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,880 DEBUG Processing 402/601 atomic regions from SNP 120325 to 120925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,988 DEBUG Processing 476/667 atomic regions from SNP 142788 to 143388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,023 DEBUG Processing 17/536 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,100 DEBUG Processing 286/564 atomic regions from SNP 85672 to 86272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,128 DEBUG Processing 403/601 atomic regions from SNP 120625 to 121225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,224 DEBUG Processing 477/667 atomic regions from SNP 143088 to 143688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,249 DEBUG Processing 18/536 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,334 DEBUG Processing 287/564 atomic regions from SNP 85972 to 86572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,362 DEBUG Processing 404/601 atomic regions from SNP 120925 to 121525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,462 DEBUG Processing 478/667 atomic regions from SNP 143388 to 143988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,481 DEBUG Processing 19/536 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,568 DEBUG Processing 288/564 atomic regions from SNP 86272 to 86872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,600 DEBUG Processing 405/601 atomic regions from SNP 121225 to 121825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,699 DEBUG Processing 479/667 atomic regions from SNP 143688 to 144288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,705 DEBUG Processing 20/536 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,798 DEBUG Processing 289/564 atomic regions from SNP 86572 to 87172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,836 DEBUG Processing 406/601 atomic regions from SNP 121525 to 122125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,923 DEBUG Processing 21/536 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,935 DEBUG Processing 480/667 atomic regions from SNP 143988 to 144588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,028 DEBUG Processing 290/564 atomic regions from SNP 86872 to 87472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,066 DEBUG Processing 407/601 atomic regions from SNP 121825 to 122425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,160 DEBUG Processing 22/536 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,174 DEBUG Processing 481/667 atomic regions from SNP 144288 to 144888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,254 DEBUG Processing 291/564 atomic regions from SNP 87172 to 87772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,297 DEBUG Processing 408/601 atomic regions from SNP 122125 to 122725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,378 DEBUG Processing 23/536 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,413 DEBUG Processing 482/667 atomic regions from SNP 144588 to 145188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,484 DEBUG Processing 292/564 atomic regions from SNP 87472 to 88072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,528 DEBUG Processing 409/601 atomic regions from SNP 122425 to 123025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,594 DEBUG Processing 24/536 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,654 DEBUG Processing 483/667 atomic regions from SNP 144888 to 145488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,708 DEBUG Processing 293/564 atomic regions from SNP 87772 to 88372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,753 DEBUG Processing 410/601 atomic regions from SNP 122725 to 123325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,827 DEBUG Processing 25/536 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,889 DEBUG Processing 484/667 atomic regions from SNP 145188 to 145788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,931 DEBUG Processing 294/564 atomic regions from SNP 88072 to 88672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,976 DEBUG Processing 411/601 atomic regions from SNP 123025 to 123625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,034 DEBUG Processing 26/536 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,124 DEBUG Processing 485/667 atomic regions from SNP 145488 to 146088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,156 DEBUG Processing 295/564 atomic regions from SNP 88372 to 88972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,229 DEBUG Processing 412/601 atomic regions from SNP 123325 to 123925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,242 DEBUG Processing 27/536 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,365 DEBUG Processing 486/667 atomic regions from SNP 145788 to 146388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,383 DEBUG Processing 296/564 atomic regions from SNP 88672 to 89272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,461 DEBUG Processing 28/536 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,475 DEBUG Processing 413/601 atomic regions from SNP 123625 to 124225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,596 DEBUG Processing 487/667 atomic regions from SNP 146088 to 146688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,600 DEBUG Processing 297/564 atomic regions from SNP 88972 to 89572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,673 DEBUG Processing 29/536 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,696 DEBUG Processing 414/601 atomic regions from SNP 123925 to 124525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,823 DEBUG Processing 298/564 atomic regions from SNP 89272 to 89872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,827 DEBUG Processing 488/667 atomic regions from SNP 146388 to 146988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,879 DEBUG Processing 30/536 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,915 DEBUG Processing 415/601 atomic regions from SNP 124225 to 124825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,041 DEBUG Processing 299/564 atomic regions from SNP 89572 to 90172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,057 DEBUG Processing 489/667 atomic regions from SNP 146688 to 147288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,084 DEBUG Processing 31/536 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,153 DEBUG Processing 416/601 atomic regions from SNP 124525 to 125125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,259 DEBUG Processing 300/564 atomic regions from SNP 89872 to 90472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,286 DEBUG Processing 490/667 atomic regions from SNP 146988 to 147588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,292 DEBUG Processing 32/536 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,377 DEBUG Processing 417/601 atomic regions from SNP 124825 to 125425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,482 DEBUG Processing 301/564 atomic regions from SNP 90172 to 90772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,497 DEBUG Processing 33/536 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,515 DEBUG Processing 491/667 atomic regions from SNP 147288 to 147888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,603 DEBUG Processing 418/601 atomic regions from SNP 125125 to 125725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,704 DEBUG Processing 302/564 atomic regions from SNP 90472 to 91072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,705 DEBUG Processing 34/536 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,748 DEBUG Processing 492/667 atomic regions from SNP 147588 to 148188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,820 DEBUG Processing 419/601 atomic regions from SNP 125425 to 126025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,913 DEBUG Processing 35/536 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,922 DEBUG Processing 303/564 atomic regions from SNP 90772 to 91372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,981 DEBUG Processing 493/667 atomic regions from SNP 147888 to 148488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,037 DEBUG Processing 420/601 atomic regions from SNP 125725 to 126325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,117 DEBUG Processing 36/536 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,137 DEBUG Processing 304/564 atomic regions from SNP 91072 to 91672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,209 DEBUG Processing 494/667 atomic regions from SNP 148188 to 148788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,260 DEBUG Processing 421/601 atomic regions from SNP 126025 to 126625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,322 DEBUG Processing 37/536 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,357 DEBUG Processing 305/564 atomic regions from SNP 91372 to 91972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,437 DEBUG Processing 495/667 atomic regions from SNP 148488 to 149088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,488 DEBUG Processing 422/601 atomic regions from SNP 126325 to 126925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,528 DEBUG Processing 38/536 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,572 DEBUG Processing 306/564 atomic regions from SNP 91672 to 92272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,663 DEBUG Processing 496/667 atomic regions from SNP 148788 to 149388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,709 DEBUG Processing 423/601 atomic regions from SNP 126625 to 127225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,739 DEBUG Processing 39/536 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,791 DEBUG Processing 307/564 atomic regions from SNP 91972 to 92572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,891 DEBUG Processing 497/667 atomic regions from SNP 149088 to 149688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,937 DEBUG Processing 424/601 atomic regions from SNP 126925 to 127525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,956 DEBUG Processing 40/536 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,014 DEBUG Processing 308/564 atomic regions from SNP 92272 to 92872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,115 DEBUG Processing 498/667 atomic regions from SNP 149388 to 149988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,157 DEBUG Processing 425/601 atomic regions from SNP 127225 to 127825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,162 DEBUG Processing 41/536 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,235 DEBUG Processing 309/564 atomic regions from SNP 92572 to 93172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,360 DEBUG Processing 42/536 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,371 DEBUG Processing 426/601 atomic regions from SNP 127525 to 128125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,377 DEBUG Processing 499/667 atomic regions from SNP 149688 to 150288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,452 DEBUG Processing 310/564 atomic regions from SNP 92872 to 93472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,573 DEBUG Processing 43/536 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,590 DEBUG Processing 427/601 atomic regions from SNP 127825 to 128425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,615 DEBUG Processing 500/667 atomic regions from SNP 149988 to 150588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,683 DEBUG Processing 311/564 atomic regions from SNP 93172 to 93772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,780 DEBUG Processing 44/536 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,813 DEBUG Processing 428/601 atomic regions from SNP 128125 to 128725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,843 DEBUG Processing 501/667 atomic regions from SNP 150288 to 150888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,893 DEBUG Processing 312/564 atomic regions from SNP 93472 to 94072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,986 DEBUG Processing 45/536 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,055 DEBUG Processing 429/601 atomic regions from SNP 128425 to 129025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,068 DEBUG Processing 502/667 atomic regions from SNP 150588 to 151188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,104 DEBUG Processing 313/564 atomic regions from SNP 93772 to 94372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,193 DEBUG Processing 46/536 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,305 DEBUG Processing 503/667 atomic regions from SNP 150888 to 151488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,319 DEBUG Processing 430/601 atomic regions from SNP 128725 to 129325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,330 DEBUG Processing 314/564 atomic regions from SNP 94072 to 94672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,396 DEBUG Processing 47/536 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,532 DEBUG Processing 504/667 atomic regions from SNP 151188 to 151788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,549 DEBUG Processing 315/564 atomic regions from SNP 94372 to 94972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,573 DEBUG Processing 431/601 atomic regions from SNP 129025 to 129625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,599 DEBUG Processing 48/536 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,762 DEBUG Processing 505/667 atomic regions from SNP 151488 to 152088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,792 DEBUG Processing 316/564 atomic regions from SNP 94672 to 95272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,807 DEBUG Processing 49/536 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,835 DEBUG Processing 432/601 atomic regions from SNP 129325 to 129925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,991 DEBUG Processing 506/667 atomic regions from SNP 151788 to 152388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,017 DEBUG Processing 50/536 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,045 DEBUG Processing 317/564 atomic regions from SNP 94972 to 95572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,093 DEBUG Processing 433/601 atomic regions from SNP 129625 to 130225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,213 DEBUG Processing 507/667 atomic regions from SNP 152088 to 152688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,216 DEBUG Processing 51/536 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,257 DEBUG Processing 318/564 atomic regions from SNP 95272 to 95872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,358 DEBUG Processing 434/601 atomic regions from SNP 129925 to 130525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,426 DEBUG Processing 52/536 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,449 DEBUG Processing 508/667 atomic regions from SNP 152388 to 152988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,472 DEBUG Processing 319/564 atomic regions from SNP 95572 to 96172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,612 DEBUG Processing 435/601 atomic regions from SNP 130225 to 130825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,636 DEBUG Processing 53/536 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,677 DEBUG Processing 509/667 atomic regions from SNP 152688 to 153288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,686 DEBUG Processing 320/564 atomic regions from SNP 95872 to 96472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,840 DEBUG Processing 54/536 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,859 DEBUG Processing 436/601 atomic regions from SNP 130525 to 131125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,904 DEBUG Processing 321/564 atomic regions from SNP 96172 to 96772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,910 DEBUG Processing 510/667 atomic regions from SNP 152988 to 153588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,057 DEBUG Processing 55/536 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,083 DEBUG Processing 437/601 atomic regions from SNP 130825 to 131425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,122 DEBUG Processing 322/564 atomic regions from SNP 96472 to 97072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,142 DEBUG Processing 511/667 atomic regions from SNP 153288 to 153888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,259 DEBUG Processing 56/536 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,317 DEBUG Processing 438/601 atomic regions from SNP 131125 to 131725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,351 DEBUG Processing 323/564 atomic regions from SNP 96772 to 97372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,372 DEBUG Processing 512/667 atomic regions from SNP 153588 to 154188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,486 DEBUG Processing 57/536 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,547 DEBUG Processing 439/601 atomic regions from SNP 131425 to 132025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,576 DEBUG Processing 324/564 atomic regions from SNP 97072 to 97672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,600 DEBUG Processing 513/667 atomic regions from SNP 153888 to 154488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,698 DEBUG Processing 58/536 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,763 DEBUG Processing 440/601 atomic regions from SNP 131725 to 132325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,792 DEBUG Processing 325/564 atomic regions from SNP 97372 to 97972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,830 DEBUG Processing 514/667 atomic regions from SNP 154188 to 154788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,905 DEBUG Processing 59/536 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,999 DEBUG Processing 326/564 atomic regions from SNP 97672 to 98272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,003 DEBUG Processing 441/601 atomic regions from SNP 132025 to 132625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,050 DEBUG Processing 515/667 atomic regions from SNP 154488 to 155088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,123 DEBUG Processing 60/536 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,224 DEBUG Processing 327/564 atomic regions from SNP 97972 to 98572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,256 DEBUG Processing 442/601 atomic regions from SNP 132325 to 132925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,285 DEBUG Processing 516/667 atomic regions from SNP 154788 to 155388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,340 DEBUG Processing 61/536 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,442 DEBUG Processing 328/564 atomic regions from SNP 98272 to 98872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,488 DEBUG Processing 443/601 atomic regions from SNP 132625 to 133225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,509 DEBUG Processing 517/667 atomic regions from SNP 155088 to 155688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,550 DEBUG Processing 62/536 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,667 DEBUG Processing 329/564 atomic regions from SNP 98572 to 99172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,738 DEBUG Processing 518/667 atomic regions from SNP 155388 to 155988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,740 DEBUG Processing 444/601 atomic regions from SNP 132925 to 133525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,757 DEBUG Processing 63/536 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,897 DEBUG Processing 330/564 atomic regions from SNP 98872 to 99472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,963 DEBUG Processing 64/536 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,970 DEBUG Processing 519/667 atomic regions from SNP 155688 to 156288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,989 DEBUG Processing 445/601 atomic regions from SNP 133225 to 133825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,138 DEBUG Processing 331/564 atomic regions from SNP 99172 to 99772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,169 DEBUG Processing 65/536 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,194 DEBUG Processing 520/667 atomic regions from SNP 155988 to 156588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,223 DEBUG Processing 446/601 atomic regions from SNP 133525 to 134125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,376 DEBUG Processing 332/564 atomic regions from SNP 99472 to 100072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,381 DEBUG Processing 66/536 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,422 DEBUG Processing 521/667 atomic regions from SNP 156288 to 156888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,450 DEBUG Processing 447/601 atomic regions from SNP 133825 to 134425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,591 DEBUG Processing 67/536 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,593 DEBUG Processing 333/564 atomic regions from SNP 99772 to 100372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,653 DEBUG Processing 522/667 atomic regions from SNP 156588 to 157188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,706 DEBUG Processing 448/601 atomic regions from SNP 134125 to 134725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,800 DEBUG Processing 68/536 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,819 DEBUG Processing 334/564 atomic regions from SNP 100072 to 100672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,887 DEBUG Processing 523/667 atomic regions from SNP 156888 to 157488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,966 DEBUG Processing 449/601 atomic regions from SNP 134425 to 135025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,006 DEBUG Processing 69/536 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,039 DEBUG Processing 335/564 atomic regions from SNP 100372 to 100972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,115 DEBUG Processing 524/667 atomic regions from SNP 157188 to 157788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,212 DEBUG Processing 70/536 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,214 DEBUG Processing 450/601 atomic regions from SNP 134725 to 135325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,258 DEBUG Processing 336/564 atomic regions from SNP 100672 to 101272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,343 DEBUG Processing 525/667 atomic regions from SNP 157488 to 158088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,420 DEBUG Processing 71/536 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,467 DEBUG Processing 451/601 atomic regions from SNP 135025 to 135625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,474 DEBUG Processing 337/564 atomic regions from SNP 100972 to 101572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,567 DEBUG Processing 526/667 atomic regions from SNP 157788 to 158388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,627 DEBUG Processing 72/536 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,694 DEBUG Processing 338/564 atomic regions from SNP 101272 to 101872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,723 DEBUG Processing 452/601 atomic regions from SNP 135325 to 135925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,792 DEBUG Processing 527/667 atomic regions from SNP 158088 to 158688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,830 DEBUG Processing 73/536 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,914 DEBUG Processing 339/564 atomic regions from SNP 101572 to 102172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,974 DEBUG Processing 453/601 atomic regions from SNP 135625 to 136225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,020 DEBUG Processing 528/667 atomic regions from SNP 158388 to 158988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,033 DEBUG Processing 74/536 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,132 DEBUG Processing 340/564 atomic regions from SNP 101872 to 102472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,215 DEBUG Processing 454/601 atomic regions from SNP 135925 to 136525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,245 DEBUG Processing 75/536 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,255 DEBUG Processing 529/667 atomic regions from SNP 158688 to 159288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,345 DEBUG Processing 341/564 atomic regions from SNP 102172 to 102772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,457 DEBUG Processing 76/536 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,465 DEBUG Processing 455/601 atomic regions from SNP 136225 to 136825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,493 DEBUG Processing 530/667 atomic regions from SNP 158988 to 159588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,558 DEBUG Processing 342/564 atomic regions from SNP 102472 to 103072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,681 DEBUG Processing 77/536 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,722 DEBUG Processing 456/601 atomic regions from SNP 136525 to 137125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,725 DEBUG Processing 531/667 atomic regions from SNP 159288 to 159888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,774 DEBUG Processing 343/564 atomic regions from SNP 102772 to 103372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,887 DEBUG Processing 78/536 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,959 DEBUG Processing 532/667 atomic regions from SNP 159588 to 160188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,967 DEBUG Processing 457/601 atomic regions from SNP 136825 to 137425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,995 DEBUG Processing 344/564 atomic regions from SNP 103072 to 103672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,089 DEBUG Processing 79/536 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,192 DEBUG Processing 533/667 atomic regions from SNP 159888 to 160488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,200 DEBUG Processing 458/601 atomic regions from SNP 137125 to 137725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,215 DEBUG Processing 345/564 atomic regions from SNP 103372 to 103972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,334 DEBUG Processing 80/536 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,417 DEBUG Processing 534/667 atomic regions from SNP 160188 to 160788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,442 DEBUG Processing 459/601 atomic regions from SNP 137425 to 138025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,451 DEBUG Processing 346/564 atomic regions from SNP 103672 to 104272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,539 DEBUG Processing 81/536 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,647 DEBUG Processing 535/667 atomic regions from SNP 160488 to 161088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,677 DEBUG Processing 347/564 atomic regions from SNP 103972 to 104572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,688 DEBUG Processing 460/601 atomic regions from SNP 137725 to 138325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,747 DEBUG Processing 82/536 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,875 DEBUG Processing 536/667 atomic regions from SNP 160788 to 161388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,897 DEBUG Processing 348/564 atomic regions from SNP 104272 to 104872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,922 DEBUG Processing 461/601 atomic regions from SNP 138025 to 138625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,958 DEBUG Processing 83/536 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,101 DEBUG Processing 537/667 atomic regions from SNP 161088 to 161688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,116 DEBUG Processing 349/564 atomic regions from SNP 104572 to 105172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,150 DEBUG Processing 462/601 atomic regions from SNP 138325 to 138925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,165 DEBUG Processing 84/536 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,332 DEBUG Processing 538/667 atomic regions from SNP 161388 to 161988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,339 DEBUG Processing 350/564 atomic regions from SNP 104872 to 105472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,376 DEBUG Processing 85/536 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,384 DEBUG Processing 463/601 atomic regions from SNP 138625 to 139225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,558 DEBUG Processing 351/564 atomic regions from SNP 105172 to 105772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,562 DEBUG Processing 539/667 atomic regions from SNP 161688 to 162288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,585 DEBUG Processing 86/536 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,638 DEBUG Processing 464/601 atomic regions from SNP 138925 to 139525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,777 DEBUG Processing 352/564 atomic regions from SNP 105472 to 106072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,795 DEBUG Processing 87/536 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,811 DEBUG Processing 540/667 atomic regions from SNP 161988 to 162588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,886 DEBUG Processing 465/601 atomic regions from SNP 139225 to 139825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,993 DEBUG Processing 353/564 atomic regions from SNP 105772 to 106372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,002 DEBUG Processing 88/536 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,057 DEBUG Processing 541/667 atomic regions from SNP 162288 to 162888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,144 DEBUG Processing 466/601 atomic regions from SNP 139525 to 140125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,206 DEBUG Processing 89/536 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,206 DEBUG Processing 354/564 atomic regions from SNP 106072 to 106672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,291 DEBUG Processing 542/667 atomic regions from SNP 162588 to 163188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,400 DEBUG Processing 467/601 atomic regions from SNP 139825 to 140425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,408 DEBUG Processing 90/536 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,420 DEBUG Processing 355/564 atomic regions from SNP 106372 to 106972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,530 DEBUG Processing 543/667 atomic regions from SNP 162888 to 163488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,613 DEBUG Processing 91/536 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,638 DEBUG Processing 356/564 atomic regions from SNP 106672 to 107272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,650 DEBUG Processing 468/601 atomic regions from SNP 140125 to 140725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,793 DEBUG Processing 544/667 atomic regions from SNP 163188 to 163788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,816 DEBUG Processing 92/536 atomic regions from SNP 27391 to 27992 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,854 DEBUG Processing 357/564 atomic regions from SNP 106972 to 107572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,910 DEBUG Processing 469/601 atomic regions from SNP 140425 to 141025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,022 DEBUG Processing 93/536 atomic regions from SNP 27692 to 28293 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,043 DEBUG Processing 545/667 atomic regions from SNP 163488 to 164088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,071 DEBUG Processing 358/564 atomic regions from SNP 107272 to 107872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,159 DEBUG Processing 470/601 atomic regions from SNP 140725 to 141325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,229 DEBUG Processing 94/536 atomic regions from SNP 27993 to 28594 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,274 DEBUG Processing 546/667 atomic regions from SNP 163788 to 164388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,288 DEBUG Processing 359/564 atomic regions from SNP 107572 to 108172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,383 DEBUG Processing 471/601 atomic regions from SNP 141025 to 141625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,440 DEBUG Processing 95/536 atomic regions from SNP 28294 to 28895 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,509 DEBUG Processing 360/564 atomic regions from SNP 107872 to 108472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,519 DEBUG Processing 547/667 atomic regions from SNP 164088 to 164688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,604 DEBUG Processing 472/601 atomic regions from SNP 141325 to 141925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,648 DEBUG Processing 96/536 atomic regions from SNP 28595 to 29196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,730 DEBUG Processing 361/564 atomic regions from SNP 108172 to 108772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,767 DEBUG Processing 548/667 atomic regions from SNP 164388 to 164988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,829 DEBUG Processing 473/601 atomic regions from SNP 141625 to 142225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,856 DEBUG Processing 97/536 atomic regions from SNP 28896 to 29497 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,950 DEBUG Processing 362/564 atomic regions from SNP 108472 to 109072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,020 DEBUG Processing 549/667 atomic regions from SNP 164688 to 165288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,066 DEBUG Processing 98/536 atomic regions from SNP 29197 to 29798 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,081 DEBUG Processing 474/601 atomic regions from SNP 141925 to 142525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,169 DEBUG Processing 363/564 atomic regions from SNP 108772 to 109372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,276 DEBUG Processing 99/536 atomic regions from SNP 29498 to 30099 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,276 DEBUG Processing 550/667 atomic regions from SNP 164988 to 165588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,325 DEBUG Processing 475/601 atomic regions from SNP 142225 to 142825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,390 DEBUG Processing 364/564 atomic regions from SNP 109072 to 109672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,495 DEBUG Processing 100/536 atomic regions from SNP 29799 to 30400 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,516 DEBUG Processing 551/667 atomic regions from SNP 165288 to 165888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,588 DEBUG Processing 476/601 atomic regions from SNP 142525 to 143125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,622 DEBUG Processing 365/564 atomic regions from SNP 109372 to 109972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,704 DEBUG Processing 101/536 atomic regions from SNP 30100 to 30701 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,755 DEBUG Processing 552/667 atomic regions from SNP 165588 to 166188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,839 DEBUG Processing 477/601 atomic regions from SNP 142825 to 143425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,844 DEBUG Processing 366/564 atomic regions from SNP 109672 to 110272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,920 DEBUG Processing 102/536 atomic regions from SNP 30401 to 31002 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,008 DEBUG Processing 553/667 atomic regions from SNP 165888 to 166488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,067 DEBUG Processing 478/601 atomic regions from SNP 143125 to 143725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,070 DEBUG Processing 367/564 atomic regions from SNP 109972 to 110572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,126 DEBUG Processing 103/536 atomic regions from SNP 30702 to 31303 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,256 DEBUG Processing 554/667 atomic regions from SNP 166188 to 166788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,292 DEBUG Processing 479/601 atomic regions from SNP 143425 to 144025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,295 DEBUG Processing 368/564 atomic regions from SNP 110272 to 110872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,334 DEBUG Processing 104/536 atomic regions from SNP 31003 to 31604 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,503 DEBUG Processing 555/667 atomic regions from SNP 166488 to 167088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,515 DEBUG Processing 369/564 atomic regions from SNP 110572 to 111172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,517 DEBUG Processing 480/601 atomic regions from SNP 143725 to 144325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,543 DEBUG Processing 105/536 atomic regions from SNP 31304 to 31905 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,733 DEBUG Processing 556/667 atomic regions from SNP 166788 to 167388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,735 DEBUG Processing 370/564 atomic regions from SNP 110872 to 111472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,755 DEBUG Processing 106/536 atomic regions from SNP 31605 to 32206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,758 DEBUG Processing 481/601 atomic regions from SNP 144025 to 144625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,955 DEBUG Processing 371/564 atomic regions from SNP 111172 to 111772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,963 DEBUG Processing 557/667 atomic regions from SNP 167088 to 167688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,964 DEBUG Processing 107/536 atomic regions from SNP 31906 to 32507 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,000 DEBUG Processing 482/601 atomic regions from SNP 144325 to 144925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,173 DEBUG Processing 108/536 atomic regions from SNP 32207 to 32808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,177 DEBUG Processing 372/564 atomic regions from SNP 111472 to 112072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,192 DEBUG Processing 558/667 atomic regions from SNP 167388 to 167988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,237 DEBUG Processing 483/601 atomic regions from SNP 144625 to 145225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,378 DEBUG Processing 109/536 atomic regions from SNP 32508 to 33109 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,401 DEBUG Processing 373/564 atomic regions from SNP 111772 to 112372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,424 DEBUG Processing 559/667 atomic regions from SNP 167688 to 168288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,478 DEBUG Processing 484/601 atomic regions from SNP 144925 to 145525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,588 DEBUG Processing 110/536 atomic regions from SNP 32809 to 33410 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,618 DEBUG Processing 374/564 atomic regions from SNP 112072 to 112672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,661 DEBUG Processing 560/667 atomic regions from SNP 167988 to 168588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,728 DEBUG Processing 485/601 atomic regions from SNP 145225 to 145825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,819 DEBUG Processing 111/536 atomic regions from SNP 33110 to 33711 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,824 DEBUG Processing 375/564 atomic regions from SNP 112372 to 112972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,890 DEBUG Processing 561/667 atomic regions from SNP 168288 to 168888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,971 DEBUG Processing 486/601 atomic regions from SNP 145525 to 146125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,038 DEBUG Processing 376/564 atomic regions from SNP 112672 to 113272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,052 DEBUG Processing 112/536 atomic regions from SNP 33411 to 34012 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,123 DEBUG Processing 562/667 atomic regions from SNP 168588 to 169188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,194 DEBUG Processing 487/601 atomic regions from SNP 145825 to 146425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,254 DEBUG Processing 377/564 atomic regions from SNP 112972 to 113572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,269 DEBUG Processing 113/536 atomic regions from SNP 33712 to 34313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,376 DEBUG Processing 563/667 atomic regions from SNP 168888 to 169488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,418 DEBUG Processing 488/601 atomic regions from SNP 146125 to 146725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,475 DEBUG Processing 378/564 atomic regions from SNP 113272 to 113872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,493 DEBUG Processing 114/536 atomic regions from SNP 34013 to 34614 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,619 DEBUG Processing 564/667 atomic regions from SNP 169188 to 169788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,640 DEBUG Processing 489/601 atomic regions from SNP 146425 to 147025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,698 DEBUG Processing 379/564 atomic regions from SNP 113572 to 114172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,739 DEBUG Processing 115/536 atomic regions from SNP 34314 to 34915 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,870 DEBUG Processing 565/667 atomic regions from SNP 169488 to 170088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,875 DEBUG Processing 490/601 atomic regions from SNP 146725 to 147325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,918 DEBUG Processing 380/564 atomic regions from SNP 113872 to 114472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,974 DEBUG Processing 116/536 atomic regions from SNP 34615 to 35216 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,093 DEBUG Processing 566/667 atomic regions from SNP 169788 to 170388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,112 DEBUG Processing 491/601 atomic regions from SNP 147025 to 147625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,152 DEBUG Processing 381/564 atomic regions from SNP 114172 to 114772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,221 DEBUG Processing 117/536 atomic regions from SNP 34916 to 35517 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,310 DEBUG Processing 567/667 atomic regions from SNP 170088 to 170688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,351 DEBUG Processing 492/601 atomic regions from SNP 147325 to 147925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,364 DEBUG Processing 382/564 atomic regions from SNP 114472 to 115072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,461 DEBUG Processing 118/536 atomic regions from SNP 35217 to 35818 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,539 DEBUG Processing 568/667 atomic regions from SNP 170388 to 170988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,569 DEBUG Processing 493/601 atomic regions from SNP 147625 to 148225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,578 DEBUG Processing 383/564 atomic regions from SNP 114772 to 115372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,698 DEBUG Processing 119/536 atomic regions from SNP 35518 to 36119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,786 DEBUG Processing 494/601 atomic regions from SNP 147925 to 148525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,790 DEBUG Processing 569/667 atomic regions from SNP 170688 to 171288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,791 DEBUG Processing 384/564 atomic regions from SNP 115072 to 115672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,929 DEBUG Processing 120/536 atomic regions from SNP 35819 to 36420 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,005 DEBUG Processing 495/601 atomic regions from SNP 148225 to 148825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,005 DEBUG Processing 385/564 atomic regions from SNP 115372 to 115972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,014 DEBUG Processing 570/667 atomic regions from SNP 170988 to 171588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,160 DEBUG Processing 121/536 atomic regions from SNP 36120 to 36721 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,220 DEBUG Processing 386/564 atomic regions from SNP 115672 to 116272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,226 DEBUG Processing 496/601 atomic regions from SNP 148525 to 149125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,242 DEBUG Processing 571/667 atomic regions from SNP 171288 to 171888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,384 DEBUG Processing 122/536 atomic regions from SNP 36421 to 37022 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,445 DEBUG Processing 387/564 atomic regions from SNP 115972 to 116572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,451 DEBUG Processing 497/601 atomic regions from SNP 148825 to 149425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,475 DEBUG Processing 572/667 atomic regions from SNP 171588 to 172188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,614 DEBUG Processing 123/536 atomic regions from SNP 36722 to 37323 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,667 DEBUG Processing 388/564 atomic regions from SNP 116272 to 116872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,677 DEBUG Processing 498/601 atomic regions from SNP 149125 to 149725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,707 DEBUG Processing 573/667 atomic regions from SNP 171888 to 172488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,848 DEBUG Processing 124/536 atomic regions from SNP 37023 to 37624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,891 DEBUG Processing 389/564 atomic regions from SNP 116572 to 117172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,905 DEBUG Processing 499/601 atomic regions from SNP 149425 to 150025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,941 DEBUG Processing 574/667 atomic regions from SNP 172188 to 172788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,091 DEBUG Processing 125/536 atomic regions from SNP 37324 to 37925 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,109 DEBUG Processing 390/564 atomic regions from SNP 116872 to 117472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,130 DEBUG Processing 500/601 atomic regions from SNP 149725 to 150325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,172 DEBUG Processing 575/667 atomic regions from SNP 172488 to 173088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,330 DEBUG Processing 391/564 atomic regions from SNP 117172 to 117772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,337 DEBUG Processing 126/536 atomic regions from SNP 37625 to 38226 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,356 DEBUG Processing 501/601 atomic regions from SNP 150025 to 150625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,403 DEBUG Processing 576/667 atomic regions from SNP 172788 to 173388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,552 DEBUG Processing 392/564 atomic regions from SNP 117472 to 118072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,580 DEBUG Processing 127/536 atomic regions from SNP 37926 to 38527 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,582 DEBUG Processing 502/601 atomic regions from SNP 150325 to 150925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,635 DEBUG Processing 577/667 atomic regions from SNP 173088 to 173688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,772 DEBUG Processing 393/564 atomic regions from SNP 117772 to 118372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,807 DEBUG Processing 503/601 atomic regions from SNP 150625 to 151225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,814 DEBUG Processing 128/536 atomic regions from SNP 38227 to 38828 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,896 DEBUG Processing 578/667 atomic regions from SNP 173388 to 173988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,993 DEBUG Processing 394/564 atomic regions from SNP 118072 to 118672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,033 DEBUG Processing 129/536 atomic regions from SNP 38528 to 39129 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,033 DEBUG Processing 504/601 atomic regions from SNP 150925 to 151525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,154 DEBUG Processing 579/667 atomic regions from SNP 173688 to 174288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,220 DEBUG Processing 395/564 atomic regions from SNP 118372 to 118972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,252 DEBUG Processing 505/601 atomic regions from SNP 151225 to 151825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,258 DEBUG Processing 130/536 atomic regions from SNP 38829 to 39430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,389 DEBUG Processing 580/667 atomic regions from SNP 173988 to 174588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,443 DEBUG Processing 396/564 atomic regions from SNP 118672 to 119272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,473 DEBUG Processing 506/601 atomic regions from SNP 151525 to 152125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,492 DEBUG Processing 131/536 atomic regions from SNP 39130 to 39731 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,618 DEBUG Processing 581/667 atomic regions from SNP 174288 to 174888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,660 DEBUG Processing 397/564 atomic regions from SNP 118972 to 119572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,690 DEBUG Processing 507/601 atomic regions from SNP 151825 to 152425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,720 DEBUG Processing 132/536 atomic regions from SNP 39431 to 40032 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,866 DEBUG Processing 582/667 atomic regions from SNP 174588 to 175188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,876 DEBUG Processing 398/564 atomic regions from SNP 119272 to 119872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,907 DEBUG Processing 508/601 atomic regions from SNP 152125 to 152725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,948 DEBUG Processing 133/536 atomic regions from SNP 39732 to 40333 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,093 DEBUG Processing 399/564 atomic regions from SNP 119572 to 120172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,116 DEBUG Processing 583/667 atomic regions from SNP 174888 to 175488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,129 DEBUG Processing 509/601 atomic regions from SNP 152425 to 153025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,177 DEBUG Processing 134/536 atomic regions from SNP 40033 to 40634 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,306 DEBUG Processing 400/564 atomic regions from SNP 119872 to 120472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,364 DEBUG Processing 584/667 atomic regions from SNP 175188 to 175788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,375 DEBUG Processing 510/601 atomic regions from SNP 152725 to 153325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,391 DEBUG Processing 135/536 atomic regions from SNP 40334 to 40935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,511 DEBUG Processing 401/564 atomic regions from SNP 120172 to 120772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,611 DEBUG Processing 511/601 atomic regions from SNP 153025 to 153625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,611 DEBUG Processing 585/667 atomic regions from SNP 175488 to 176088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,622 DEBUG Processing 136/536 atomic regions from SNP 40635 to 41236 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,710 DEBUG Processing 402/564 atomic regions from SNP 120472 to 121072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,834 DEBUG Processing 586/667 atomic regions from SNP 175788 to 176388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,853 DEBUG Processing 137/536 atomic regions from SNP 40936 to 41537 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,854 DEBUG Processing 512/601 atomic regions from SNP 153325 to 153925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,916 DEBUG Processing 403/564 atomic regions from SNP 120772 to 121372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,057 DEBUG Processing 587/667 atomic regions from SNP 176088 to 176688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,078 DEBUG Processing 138/536 atomic regions from SNP 41237 to 41838 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,108 DEBUG Processing 513/601 atomic regions from SNP 153625 to 154225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,127 DEBUG Processing 404/564 atomic regions from SNP 121072 to 121672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,277 DEBUG Processing 588/667 atomic regions from SNP 176388 to 176988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,293 DEBUG Processing 139/536 atomic regions from SNP 41538 to 42139 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,347 DEBUG Processing 405/564 atomic regions from SNP 121372 to 121972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,354 DEBUG Processing 514/601 atomic regions from SNP 153925 to 154525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,497 DEBUG Processing 589/667 atomic regions from SNP 176688 to 177288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,523 DEBUG Processing 140/536 atomic regions from SNP 41839 to 42440 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,568 DEBUG Processing 406/564 atomic regions from SNP 121672 to 122272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,580 DEBUG Processing 515/601 atomic regions from SNP 154225 to 154825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,720 DEBUG Processing 590/667 atomic regions from SNP 176988 to 177588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,757 DEBUG Processing 141/536 atomic regions from SNP 42140 to 42741 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,780 DEBUG Processing 407/564 atomic regions from SNP 121972 to 122572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,816 DEBUG Processing 516/601 atomic regions from SNP 154525 to 155125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,942 DEBUG Processing 591/667 atomic regions from SNP 177288 to 177888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,973 DEBUG Processing 142/536 atomic regions from SNP 42441 to 43042 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,995 DEBUG Processing 408/564 atomic regions from SNP 122272 to 122872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,039 DEBUG Processing 517/601 atomic regions from SNP 154825 to 155425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,174 DEBUG Processing 592/667 atomic regions from SNP 177588 to 178188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,203 DEBUG Processing 143/536 atomic regions from SNP 42742 to 43343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,214 DEBUG Processing 409/564 atomic regions from SNP 122572 to 123172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,263 DEBUG Processing 518/601 atomic regions from SNP 155125 to 155725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,408 DEBUG Processing 593/667 atomic regions from SNP 177888 to 178488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,436 DEBUG Processing 410/564 atomic regions from SNP 122872 to 123472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,439 DEBUG Processing 144/536 atomic regions from SNP 43043 to 43644 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,488 DEBUG Processing 519/601 atomic regions from SNP 155425 to 156025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,643 DEBUG Processing 594/667 atomic regions from SNP 178188 to 178788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,658 DEBUG Processing 411/564 atomic regions from SNP 123172 to 123772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,675 DEBUG Processing 145/536 atomic regions from SNP 43344 to 43945 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,710 DEBUG Processing 520/601 atomic regions from SNP 155725 to 156325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,883 DEBUG Processing 412/564 atomic regions from SNP 123472 to 124072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,885 DEBUG Processing 595/667 atomic regions from SNP 178488 to 179088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,909 DEBUG Processing 146/536 atomic regions from SNP 43645 to 44246 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,937 DEBUG Processing 521/601 atomic regions from SNP 156025 to 156625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,111 DEBUG Processing 413/564 atomic regions from SNP 123772 to 124372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,123 DEBUG Processing 596/667 atomic regions from SNP 178788 to 179388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,143 DEBUG Processing 147/536 atomic regions from SNP 43946 to 44547 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,163 DEBUG Processing 522/601 atomic regions from SNP 156325 to 156925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,336 DEBUG Processing 414/564 atomic regions from SNP 124072 to 124672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,360 DEBUG Processing 597/667 atomic regions from SNP 179088 to 179688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,390 DEBUG Processing 523/601 atomic regions from SNP 156625 to 157225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,390 DEBUG Processing 148/536 atomic regions from SNP 44247 to 44848 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,557 DEBUG Processing 415/564 atomic regions from SNP 124372 to 124972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,594 DEBUG Processing 598/667 atomic regions from SNP 179388 to 179988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,616 DEBUG Processing 524/601 atomic regions from SNP 156925 to 157525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,623 DEBUG Processing 149/536 atomic regions from SNP 44548 to 45149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,780 DEBUG Processing 416/564 atomic regions from SNP 124672 to 125272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,835 DEBUG Processing 599/667 atomic regions from SNP 179688 to 180288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,842 DEBUG Processing 525/601 atomic regions from SNP 157225 to 157825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,847 DEBUG Processing 150/536 atomic regions from SNP 44849 to 45450 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,002 DEBUG Processing 417/564 atomic regions from SNP 124972 to 125572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,068 DEBUG Processing 600/667 atomic regions from SNP 179988 to 180588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,070 DEBUG Processing 526/601 atomic regions from SNP 157525 to 158125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,077 DEBUG Processing 151/536 atomic regions from SNP 45150 to 45751 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,223 DEBUG Processing 418/564 atomic regions from SNP 125272 to 125872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,297 DEBUG Processing 527/601 atomic regions from SNP 157825 to 158425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,304 DEBUG Processing 601/667 atomic regions from SNP 180288 to 180888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,307 DEBUG Processing 152/536 atomic regions from SNP 45451 to 46052 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,442 DEBUG Processing 419/564 atomic regions from SNP 125572 to 126172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,528 DEBUG Processing 528/601 atomic regions from SNP 158125 to 158725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,539 DEBUG Processing 153/536 atomic regions from SNP 45752 to 46353 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,563 DEBUG Processing 602/667 atomic regions from SNP 180588 to 181188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,661 DEBUG Processing 420/564 atomic regions from SNP 125872 to 126472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,752 DEBUG Processing 154/536 atomic regions from SNP 46053 to 46654 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,759 DEBUG Processing 529/601 atomic regions from SNP 158425 to 159025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,822 DEBUG Processing 603/667 atomic regions from SNP 180888 to 181488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,885 DEBUG Processing 421/564 atomic regions from SNP 126172 to 126772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,981 DEBUG Processing 155/536 atomic regions from SNP 46354 to 46955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,990 DEBUG Processing 530/601 atomic regions from SNP 158725 to 159325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,064 DEBUG Processing 604/667 atomic regions from SNP 181188 to 181788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,106 DEBUG Processing 422/564 atomic regions from SNP 126472 to 127072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,204 DEBUG Processing 156/536 atomic regions from SNP 46655 to 47256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,211 DEBUG Processing 531/601 atomic regions from SNP 159025 to 159625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,297 DEBUG Processing 605/667 atomic regions from SNP 181488 to 182088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,324 DEBUG Processing 423/564 atomic regions from SNP 126772 to 127372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,414 DEBUG Processing 157/536 atomic regions from SNP 46956 to 47557 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,430 DEBUG Processing 532/601 atomic regions from SNP 159325 to 159925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,531 DEBUG Processing 606/667 atomic regions from SNP 181788 to 182388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,546 DEBUG Processing 424/564 atomic regions from SNP 127072 to 127672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,629 DEBUG Processing 158/536 atomic regions from SNP 47257 to 47858 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,649 DEBUG Processing 533/601 atomic regions from SNP 159625 to 160225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,760 DEBUG Processing 607/667 atomic regions from SNP 182088 to 182688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,765 DEBUG Processing 425/564 atomic regions from SNP 127372 to 127972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,850 DEBUG Processing 159/536 atomic regions from SNP 47558 to 48159 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,866 DEBUG Processing 534/601 atomic regions from SNP 159925 to 160525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,977 DEBUG Processing 426/564 atomic regions from SNP 127672 to 128272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,984 DEBUG Processing 608/667 atomic regions from SNP 182388 to 182988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,069 DEBUG Processing 160/536 atomic regions from SNP 47859 to 48460 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,092 DEBUG Processing 535/601 atomic regions from SNP 160225 to 160825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,179 DEBUG Processing 427/564 atomic regions from SNP 127972 to 128572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,198 DEBUG Processing 609/667 atomic regions from SNP 182688 to 183288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,293 DEBUG Processing 161/536 atomic regions from SNP 48160 to 48761 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,317 DEBUG Processing 536/601 atomic regions from SNP 160525 to 161125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,392 DEBUG Processing 428/564 atomic regions from SNP 128272 to 128872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,421 DEBUG Processing 610/667 atomic regions from SNP 182988 to 183588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,524 DEBUG Processing 162/536 atomic regions from SNP 48461 to 49062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,558 DEBUG Processing 537/601 atomic regions from SNP 160825 to 161425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,611 DEBUG Processing 429/564 atomic regions from SNP 128572 to 129172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,645 DEBUG Processing 611/667 atomic regions from SNP 183288 to 183888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,737 DEBUG Processing 163/536 atomic regions from SNP 48762 to 49363 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,791 DEBUG Processing 538/601 atomic regions from SNP 161125 to 161725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,831 DEBUG Processing 430/564 atomic regions from SNP 128872 to 129472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,881 DEBUG Processing 612/667 atomic regions from SNP 183588 to 184188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,953 DEBUG Processing 164/536 atomic regions from SNP 49063 to 49664 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,021 DEBUG Processing 539/601 atomic regions from SNP 161425 to 162025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,055 DEBUG Processing 431/564 atomic regions from SNP 129172 to 129772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,145 DEBUG Processing 613/667 atomic regions from SNP 183888 to 184488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,161 DEBUG Processing 165/536 atomic regions from SNP 49364 to 49965 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,244 DEBUG Processing 540/601 atomic regions from SNP 161725 to 162325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,274 DEBUG Processing 432/564 atomic regions from SNP 129472 to 130072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,381 DEBUG Processing 166/536 atomic regions from SNP 49665 to 50266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,421 DEBUG Processing 614/667 atomic regions from SNP 184188 to 184788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,461 DEBUG Processing 541/601 atomic regions from SNP 162025 to 162625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,492 DEBUG Processing 433/564 atomic regions from SNP 129772 to 130372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,591 DEBUG Processing 167/536 atomic regions from SNP 49966 to 50567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,677 DEBUG Processing 542/601 atomic regions from SNP 162325 to 162925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,677 DEBUG Processing 615/667 atomic regions from SNP 184488 to 185088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,712 DEBUG Processing 434/564 atomic regions from SNP 130072 to 130672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,787 DEBUG Processing 168/536 atomic regions from SNP 50267 to 50868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,893 DEBUG Processing 543/601 atomic regions from SNP 162625 to 163225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,940 DEBUG Processing 616/667 atomic regions from SNP 184788 to 185388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,952 DEBUG Processing 435/564 atomic regions from SNP 130372 to 130972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,990 DEBUG Processing 169/536 atomic regions from SNP 50568 to 51169 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,105 DEBUG Processing 544/601 atomic regions from SNP 162925 to 163525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,167 DEBUG Processing 436/564 atomic regions from SNP 130672 to 131272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,191 DEBUG Processing 170/536 atomic regions from SNP 50869 to 51470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,193 DEBUG Processing 617/667 atomic regions from SNP 185088 to 185688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,316 DEBUG Processing 545/601 atomic regions from SNP 163225 to 163825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,378 DEBUG Processing 437/564 atomic regions from SNP 130972 to 131572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,391 DEBUG Processing 171/536 atomic regions from SNP 51170 to 51771 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,430 DEBUG Processing 618/667 atomic regions from SNP 185388 to 185988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,522 DEBUG Processing 546/601 atomic regions from SNP 163525 to 164125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,591 DEBUG Processing 172/536 atomic regions from SNP 51471 to 52072 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,599 DEBUG Processing 438/564 atomic regions from SNP 131272 to 131872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,681 DEBUG Processing 619/667 atomic regions from SNP 185688 to 186288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,728 DEBUG Processing 547/601 atomic regions from SNP 163825 to 164425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,792 DEBUG Processing 173/536 atomic regions from SNP 51772 to 52373 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,817 DEBUG Processing 439/564 atomic regions from SNP 131572 to 132172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,935 DEBUG Processing 620/667 atomic regions from SNP 185988 to 186588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,942 DEBUG Processing 548/601 atomic regions from SNP 164125 to 164725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,015 DEBUG Processing 174/536 atomic regions from SNP 52073 to 52674 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,016 DEBUG Processing 440/564 atomic regions from SNP 131872 to 132472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,153 DEBUG Processing 549/601 atomic regions from SNP 164425 to 165025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,181 DEBUG Processing 621/667 atomic regions from SNP 186288 to 186888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,217 DEBUG Processing 441/564 atomic regions from SNP 132172 to 132772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,245 DEBUG Processing 175/536 atomic regions from SNP 52374 to 52975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,374 DEBUG Processing 550/601 atomic regions from SNP 164725 to 165325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,429 DEBUG Processing 442/564 atomic regions from SNP 132472 to 133072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,433 DEBUG Processing 622/667 atomic regions from SNP 186588 to 187188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,478 DEBUG Processing 176/536 atomic regions from SNP 52675 to 53276 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,594 DEBUG Processing 551/601 atomic regions from SNP 165025 to 165625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,644 DEBUG Processing 443/564 atomic regions from SNP 132772 to 133372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,669 DEBUG Processing 623/667 atomic regions from SNP 186888 to 187488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,695 DEBUG Processing 177/536 atomic regions from SNP 52976 to 53577 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,810 DEBUG Processing 552/601 atomic regions from SNP 165325 to 165925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,862 DEBUG Processing 444/564 atomic regions from SNP 133072 to 133672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,892 DEBUG Processing 178/536 atomic regions from SNP 53277 to 53878 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,907 DEBUG Processing 624/667 atomic regions from SNP 187188 to 187788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,028 DEBUG Processing 553/601 atomic regions from SNP 165625 to 166225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,088 DEBUG Processing 445/564 atomic regions from SNP 133372 to 133972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,132 DEBUG Processing 179/536 atomic regions from SNP 53578 to 54179 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,150 DEBUG Processing 625/667 atomic regions from SNP 187488 to 188088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,242 DEBUG Processing 554/601 atomic regions from SNP 165925 to 166525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,303 DEBUG Processing 446/564 atomic regions from SNP 133672 to 134272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,357 DEBUG Processing 180/536 atomic regions from SNP 53879 to 54480 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,398 DEBUG Processing 626/667 atomic regions from SNP 187788 to 188388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,470 DEBUG Processing 555/601 atomic regions from SNP 166225 to 166825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,514 DEBUG Processing 447/564 atomic regions from SNP 133972 to 134572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,586 DEBUG Processing 181/536 atomic regions from SNP 54180 to 54781 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,659 DEBUG Processing 627/667 atomic regions from SNP 188088 to 188688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,727 DEBUG Processing 556/601 atomic regions from SNP 166525 to 167125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,728 DEBUG Processing 448/564 atomic regions from SNP 134272 to 134872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,816 DEBUG Processing 182/536 atomic regions from SNP 54481 to 55082 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,913 DEBUG Processing 628/667 atomic regions from SNP 188388 to 188988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,947 DEBUG Processing 557/601 atomic regions from SNP 166825 to 167425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,948 DEBUG Processing 449/564 atomic regions from SNP 134572 to 135172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,052 DEBUG Processing 183/536 atomic regions from SNP 54782 to 55383 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,164 DEBUG Processing 450/564 atomic regions from SNP 134872 to 135472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,169 DEBUG Processing 558/601 atomic regions from SNP 167125 to 167725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,173 DEBUG Processing 629/667 atomic regions from SNP 188688 to 189288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,266 DEBUG Processing 184/536 atomic regions from SNP 55083 to 55684 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,378 DEBUG Processing 451/564 atomic regions from SNP 135172 to 135772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,390 DEBUG Processing 559/601 atomic regions from SNP 167425 to 168025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,437 DEBUG Processing 630/667 atomic regions from SNP 188988 to 189588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,487 DEBUG Processing 185/536 atomic regions from SNP 55384 to 55985 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,588 DEBUG Processing 452/564 atomic regions from SNP 135472 to 136072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,605 DEBUG Processing 560/601 atomic regions from SNP 167725 to 168325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,666 DEBUG Processing 631/667 atomic regions from SNP 189288 to 189888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,716 DEBUG Processing 186/536 atomic regions from SNP 55685 to 56286 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,793 DEBUG Processing 453/564 atomic regions from SNP 135772 to 136372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,813 DEBUG Processing 561/601 atomic regions from SNP 168025 to 168625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,887 DEBUG Processing 632/667 atomic regions from SNP 189588 to 190188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,949 DEBUG Processing 187/536 atomic regions from SNP 55986 to 56587 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,996 DEBUG Processing 454/564 atomic regions from SNP 136072 to 136672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,018 DEBUG Processing 562/601 atomic regions from SNP 168325 to 168925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,102 DEBUG Processing 633/667 atomic regions from SNP 189888 to 190488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,173 DEBUG Processing 188/536 atomic regions from SNP 56287 to 56888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,205 DEBUG Processing 455/564 atomic regions from SNP 136372 to 136972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,230 DEBUG Processing 563/601 atomic regions from SNP 168625 to 169225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,317 DEBUG Processing 634/667 atomic regions from SNP 190188 to 190788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,364 DEBUG Processing 189/536 atomic regions from SNP 56588 to 57189 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,412 DEBUG Processing 456/564 atomic regions from SNP 136672 to 137272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,439 DEBUG Processing 564/601 atomic regions from SNP 168925 to 169525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,527 DEBUG Processing 635/667 atomic regions from SNP 190488 to 191088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,552 DEBUG Processing 190/536 atomic regions from SNP 56889 to 57490 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,622 DEBUG Processing 457/564 atomic regions from SNP 136972 to 137572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,654 DEBUG Processing 565/601 atomic regions from SNP 169225 to 169825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,748 DEBUG Processing 636/667 atomic regions from SNP 190788 to 191388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,751 DEBUG Processing 191/536 atomic regions from SNP 57190 to 57791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,843 DEBUG Processing 458/564 atomic regions from SNP 137272 to 137872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,874 DEBUG Processing 566/601 atomic regions from SNP 169525 to 170125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,960 DEBUG Processing 192/536 atomic regions from SNP 57491 to 58092 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,974 DEBUG Processing 637/667 atomic regions from SNP 191088 to 191688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,056 DEBUG Processing 459/564 atomic regions from SNP 137572 to 138172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,116 DEBUG Processing 567/601 atomic regions from SNP 169825 to 170425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,168 DEBUG Processing 193/536 atomic regions from SNP 57792 to 58393 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,197 DEBUG Processing 638/667 atomic regions from SNP 191388 to 191988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,268 DEBUG Processing 460/564 atomic regions from SNP 137872 to 138472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,334 DEBUG Processing 568/601 atomic regions from SNP 170125 to 170725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,369 DEBUG Processing 194/536 atomic regions from SNP 58093 to 58694 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,422 DEBUG Processing 639/667 atomic regions from SNP 191688 to 192288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,478 DEBUG Processing 461/564 atomic regions from SNP 138172 to 138772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,546 DEBUG Processing 569/601 atomic regions from SNP 170425 to 171025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,564 DEBUG Processing 195/536 atomic regions from SNP 58394 to 58995 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,639 DEBUG Processing 640/667 atomic regions from SNP 191988 to 192588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,699 DEBUG Processing 462/564 atomic regions from SNP 138472 to 139072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,763 DEBUG Processing 196/536 atomic regions from SNP 58695 to 59296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,789 DEBUG Processing 570/601 atomic regions from SNP 170725 to 171325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,858 DEBUG Processing 641/667 atomic regions from SNP 192288 to 192888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,915 DEBUG Processing 463/564 atomic regions from SNP 138772 to 139372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,969 DEBUG Processing 197/536 atomic regions from SNP 58996 to 59597 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,041 DEBUG Processing 571/601 atomic regions from SNP 171025 to 171625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,078 DEBUG Processing 642/667 atomic regions from SNP 192588 to 193188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,123 DEBUG Processing 464/564 atomic regions from SNP 139072 to 139672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,169 DEBUG Processing 198/536 atomic regions from SNP 59297 to 59898 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,296 DEBUG Processing 572/601 atomic regions from SNP 171325 to 171925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,299 DEBUG Processing 643/667 atomic regions from SNP 192888 to 193488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,336 DEBUG Processing 465/564 atomic regions from SNP 139372 to 139972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,371 DEBUG Processing 199/536 atomic regions from SNP 59598 to 60199 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,528 DEBUG Processing 644/667 atomic regions from SNP 193188 to 193788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,556 DEBUG Processing 573/601 atomic regions from SNP 171625 to 172225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,558 DEBUG Processing 466/564 atomic regions from SNP 139672 to 140272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,581 DEBUG Processing 200/536 atomic regions from SNP 59899 to 60500 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,765 DEBUG Processing 645/667 atomic regions from SNP 193488 to 194088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,783 DEBUG Processing 467/564 atomic regions from SNP 139972 to 140572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,788 DEBUG Processing 201/536 atomic regions from SNP 60200 to 60801 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,802 DEBUG Processing 574/601 atomic regions from SNP 171925 to 172525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,997 DEBUG Processing 202/536 atomic regions from SNP 60501 to 61102 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,998 DEBUG Processing 646/667 atomic regions from SNP 193788 to 194388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,003 DEBUG Processing 468/564 atomic regions from SNP 140272 to 140872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,048 DEBUG Processing 575/601 atomic regions from SNP 172225 to 172825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,212 DEBUG Processing 203/536 atomic regions from SNP 60802 to 61403 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,229 DEBUG Processing 469/564 atomic regions from SNP 140572 to 141172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,243 DEBUG Processing 647/667 atomic regions from SNP 194088 to 194688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,291 DEBUG Processing 576/601 atomic regions from SNP 172525 to 173125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,426 DEBUG Processing 204/536 atomic regions from SNP 61103 to 61704 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,461 DEBUG Processing 470/564 atomic regions from SNP 140872 to 141472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,486 DEBUG Processing 648/667 atomic regions from SNP 194388 to 194988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,553 DEBUG Processing 577/601 atomic regions from SNP 172825 to 173425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,633 DEBUG Processing 205/536 atomic regions from SNP 61404 to 62005 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,678 DEBUG Processing 471/564 atomic regions from SNP 141172 to 141772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,714 DEBUG Processing 649/667 atomic regions from SNP 194688 to 195288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,784 DEBUG Processing 578/601 atomic regions from SNP 173125 to 173725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,839 DEBUG Processing 206/536 atomic regions from SNP 61705 to 62306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,896 DEBUG Processing 472/564 atomic regions from SNP 141472 to 142072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,947 DEBUG Processing 650/667 atomic regions from SNP 194988 to 195588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,022 DEBUG Processing 579/601 atomic regions from SNP 173425 to 174025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,046 DEBUG Processing 207/536 atomic regions from SNP 62006 to 62607 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,131 DEBUG Processing 473/564 atomic regions from SNP 141772 to 142372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,181 DEBUG Processing 651/667 atomic regions from SNP 195288 to 195888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,259 DEBUG Processing 580/601 atomic regions from SNP 173725 to 174325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,263 DEBUG Processing 208/536 atomic regions from SNP 62307 to 62908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,357 DEBUG Processing 474/564 atomic regions from SNP 142072 to 142672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,423 DEBUG Processing 652/667 atomic regions from SNP 195588 to 196188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,469 DEBUG Processing 209/536 atomic regions from SNP 62608 to 63209 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,504 DEBUG Processing 581/601 atomic regions from SNP 174025 to 174625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,588 DEBUG Processing 475/564 atomic regions from SNP 142372 to 142972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,654 DEBUG Processing 653/667 atomic regions from SNP 195888 to 196488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,669 DEBUG Processing 210/536 atomic regions from SNP 62909 to 63510 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,748 DEBUG Processing 582/601 atomic regions from SNP 174325 to 174925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,806 DEBUG Processing 476/564 atomic regions from SNP 142672 to 143272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,874 DEBUG Processing 211/536 atomic regions from SNP 63210 to 63811 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,885 DEBUG Processing 654/667 atomic regions from SNP 196188 to 196788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,981 DEBUG Processing 583/601 atomic regions from SNP 174625 to 175225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,017 DEBUG Processing 477/564 atomic regions from SNP 142972 to 143572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,075 DEBUG Processing 212/536 atomic regions from SNP 63511 to 64112 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,108 DEBUG Processing 655/667 atomic regions from SNP 196488 to 197088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,183 DEBUG Processing 584/601 atomic regions from SNP 174925 to 175525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,218 DEBUG Processing 478/564 atomic regions from SNP 143272 to 143872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,278 DEBUG Processing 213/536 atomic regions from SNP 63812 to 64413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,331 DEBUG Processing 656/667 atomic regions from SNP 196788 to 197388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,391 DEBUG Processing 585/601 atomic regions from SNP 175225 to 175825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,425 DEBUG Processing 479/564 atomic regions from SNP 143572 to 144172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,484 DEBUG Processing 214/536 atomic regions from SNP 64113 to 64714 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,563 DEBUG Processing 657/667 atomic regions from SNP 197088 to 197688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,614 DEBUG Processing 586/601 atomic regions from SNP 175525 to 176125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,634 DEBUG Processing 480/564 atomic regions from SNP 143872 to 144472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,683 DEBUG Processing 215/536 atomic regions from SNP 64414 to 65015 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,794 DEBUG Processing 658/667 atomic regions from SNP 197388 to 197988 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,833 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:58:09,856 DEBUG Processing 587/601 atomic regions from SNP 175825 to 176425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,868 DEBUG Processing 481/564 atomic regions from SNP 144172 to 144772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,888 DEBUG Processing 216/536 atomic regions from SNP 64715 to 65316 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,040 DEBUG Processing 659/667 atomic regions from SNP 197688 to 198288 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,086 DEBUG Processing 482/564 atomic regions from SNP 144472 to 145072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,090 DEBUG Processing 588/601 atomic regions from SNP 176125 to 176725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,092 DEBUG Processing 217/536 atomic regions from SNP 65016 to 65617 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,269 DEBUG Processing 660/667 atomic regions from SNP 197988 to 198588 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,299 DEBUG Processing 218/536 atomic regions from SNP 65317 to 65918 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,306 DEBUG Processing 483/564 atomic regions from SNP 144772 to 145372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,312 DEBUG Processing 589/601 atomic regions from SNP 176425 to 177025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,502 DEBUG Processing 661/667 atomic regions from SNP 198288 to 198888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,510 DEBUG Processing 219/536 atomic regions from SNP 65618 to 66219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,536 DEBUG Processing 484/564 atomic regions from SNP 145072 to 145672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,551 DEBUG Processing 590/601 atomic regions from SNP 176725 to 177325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,719 DEBUG Processing 220/536 atomic regions from SNP 65919 to 66520 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,732 DEBUG Processing 662/667 atomic regions from SNP 198588 to 199188 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,759 DEBUG Processing 485/564 atomic regions from SNP 145372 to 145972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,775 DEBUG Processing 591/601 atomic regions from SNP 177025 to 177625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,921 DEBUG Processing 221/536 atomic regions from SNP 66220 to 66821 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,961 DEBUG Processing 663/667 atomic regions from SNP 198888 to 199488 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,982 DEBUG Processing 486/564 atomic regions from SNP 145672 to 146272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,026 DEBUG Processing 592/601 atomic regions from SNP 177325 to 177925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,123 DEBUG Processing 222/536 atomic regions from SNP 66521 to 67122 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,195 DEBUG Processing 664/667 atomic regions from SNP 199188 to 199788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,205 DEBUG Processing 487/564 atomic regions from SNP 145972 to 146572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,281 DEBUG Processing 593/601 atomic regions from SNP 177625 to 178225 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,327 DEBUG Processing 223/536 atomic regions from SNP 66822 to 67423 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,423 DEBUG Processing 665/667 atomic regions from SNP 199488 to 200088 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,425 DEBUG Processing 488/564 atomic regions from SNP 146272 to 146872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,533 DEBUG Processing 224/536 atomic regions from SNP 67123 to 67724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,539 DEBUG Processing 594/601 atomic regions from SNP 177925 to 178525 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,641 DEBUG Processing 489/564 atomic regions from SNP 146572 to 147172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,650 DEBUG Processing 666/667 atomic regions from SNP 199788 to 200388 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,740 DEBUG Processing 225/536 atomic regions from SNP 67424 to 68025 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,782 DEBUG Processing 595/601 atomic regions from SNP 178225 to 178825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,855 DEBUG Processing 490/564 atomic regions from SNP 146872 to 147472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,875 DEBUG Processing 667/667 atomic regions from SNP 200088 to 200688 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,948 DEBUG Processing 226/536 atomic regions from SNP 67725 to 68326 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,016 DEBUG Unique SNPs positions in subchromosome 1: 200689 2025-01-31 09:58:12,021 DEBUG Processing 596/601 atomic regions from SNP 178525 to 179125 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,070 DEBUG Processing 491/564 atomic regions from SNP 147172 to 147772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,159 DEBUG Processing 227/536 atomic regions from SNP 68026 to 68627 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,239 DEBUG Processing 597/601 atomic regions from SNP 178825 to 179425 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,278 DEBUG Processing 492/564 atomic regions from SNP 147472 to 148072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,357 DEBUG Processing 228/536 atomic regions from SNP 68327 to 68928 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,461 DEBUG Processing 598/601 atomic regions from SNP 179125 to 179725 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,487 DEBUG Processing 493/564 atomic regions from SNP 147772 to 148372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,567 DEBUG Processing 229/536 atomic regions from SNP 68628 to 69229 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,704 DEBUG Processing 494/564 atomic regions from SNP 148072 to 148672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,710 DEBUG Processing 599/601 atomic regions from SNP 179425 to 180025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,774 DEBUG Processing 230/536 atomic regions from SNP 68929 to 69530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,929 DEBUG Processing 495/564 atomic regions from SNP 148372 to 148972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,968 DEBUG Processing 600/601 atomic regions from SNP 179725 to 180325 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,991 DEBUG Processing 231/536 atomic regions from SNP 69230 to 69831 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,161 DEBUG Processing 496/564 atomic regions from SNP 148672 to 149272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,201 DEBUG Processing 601/601 atomic regions from SNP 180025 to 180625 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,205 DEBUG Processing 232/536 atomic regions from SNP 69531 to 70132 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,352 DEBUG Unique SNPs positions in subchromosome 1: 180626 2025-01-31 09:58:13,377 DEBUG Processing 497/564 atomic regions from SNP 148972 to 149572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,415 DEBUG Processing 233/536 atomic regions from SNP 69832 to 70433 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,592 DEBUG Processing 498/564 atomic regions from SNP 149272 to 149872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,623 DEBUG Processing 234/536 atomic regions from SNP 70133 to 70734 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,825 DEBUG Processing 499/564 atomic regions from SNP 149572 to 150172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,825 DEBUG Processing 235/536 atomic regions from SNP 70434 to 71035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,031 DEBUG Processing 236/536 atomic regions from SNP 70735 to 71336 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,068 DEBUG Processing 500/564 atomic regions from SNP 149872 to 150472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,233 DEBUG Processing 237/536 atomic regions from SNP 71036 to 71637 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,314 DEBUG Processing 501/564 atomic regions from SNP 150172 to 150772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,431 DEBUG Processing 238/536 atomic regions from SNP 71337 to 71938 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,533 DEBUG Processing 502/564 atomic regions from SNP 150472 to 151072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,634 DEBUG Processing 239/536 atomic regions from SNP 71638 to 72239 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,741 DEBUG Processing 503/564 atomic regions from SNP 150772 to 151372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,860 DEBUG Processing 240/536 atomic regions from SNP 71939 to 72540 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,971 DEBUG Processing 504/564 atomic regions from SNP 151072 to 151672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,092 DEBUG Processing 241/536 atomic regions from SNP 72240 to 72841 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,182 DEBUG Processing 505/564 atomic regions from SNP 151372 to 151972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,328 DEBUG Processing 242/536 atomic regions from SNP 72541 to 73142 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,394 DEBUG Processing 506/564 atomic regions from SNP 151672 to 152272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,548 DEBUG Processing 243/536 atomic regions from SNP 72842 to 73443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,606 DEBUG Processing 507/564 atomic regions from SNP 151972 to 152572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,768 DEBUG Processing 244/536 atomic regions from SNP 73143 to 73744 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,817 DEBUG Processing 508/564 atomic regions from SNP 152272 to 152872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,002 DEBUG Processing 245/536 atomic regions from SNP 73444 to 74045 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,026 DEBUG Processing 509/564 atomic regions from SNP 152572 to 153172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,225 DEBUG Processing 246/536 atomic regions from SNP 73745 to 74346 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,238 DEBUG Processing 510/564 atomic regions from SNP 152872 to 153472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,436 DEBUG Processing 247/536 atomic regions from SNP 74046 to 74647 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,446 DEBUG Processing 511/564 atomic regions from SNP 153172 to 153772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,506 DEBUG Subchromosome time: 183.34805655805394, subchromosome SNPs: 200689 2025-01-31 09:58:16,506 DEBUG Estimated BADs: [4.09, 0.68, 2.04, 4.09, 1.02, 4.09, 2.04, 0.51, 1.02, 4.09, 6.13, 2.04, 0.51, 2.04, 4.09, 2.04, 8.17, 2.04, 20.43, 1.02] SNP counts: [4641, 1770, 38033, 2368, 31919, 6270, 9296, 5685, 9003, 26152, 7451, 8976, 7490, 3984, 12254, 8388, 5108, 8900, 91, 2910] SNP IDs counts: [4641, 1770, 38033, 2368, 31919, 6270, 9296, 5685, 9003, 26152, 7451, 8976, 7490, 3984, 12254, 8388, 5108, 8900, 91, 2910] Critical gap: 599968bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.58Mbp, 6.61Mbp, 31.91Mbp, 33.20Mbp, 51.69Mbp, 55.30Mbp, 60.59Mbp, 63.97Mbp, 69.15Mbp, 83.29Mbp, 87.19Mbp, 92.60Mbp, 97.04Mbp, 99.26Mbp, 105.95Mbp, 110.38Mbp, 113.05Mbp, 118.30Mbp, 118.35Mbp, 120.13Mbp] 2025-01-31 09:58:16,506 DEBUG chr12 time: 183.34856102301273 s 2025-01-31 09:58:16,656 DEBUG chr12: Fitting background model for 20 segments 2025-01-31 09:58:16,660 DEBUG Processing 512/564 atomic regions from SNP 153472 to 154072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,674 DEBUG Processing 248/536 atomic regions from SNP 74347 to 74948 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,868 DEBUG Processing 513/564 atomic regions from SNP 153772 to 154372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,905 DEBUG Processing 249/536 atomic regions from SNP 74648 to 75249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,093 DEBUG Processing 514/564 atomic regions from SNP 154072 to 154672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,127 DEBUG Processing 250/536 atomic regions from SNP 74949 to 75550 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,324 DEBUG Processing 251/536 atomic regions from SNP 75250 to 75851 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,324 DEBUG Processing 515/564 atomic regions from SNP 154372 to 154972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,526 DEBUG Processing 252/536 atomic regions from SNP 75551 to 76152 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,566 DEBUG Processing 516/564 atomic regions from SNP 154672 to 155272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,738 DEBUG Processing 253/536 atomic regions from SNP 75852 to 76453 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,802 DEBUG Processing 517/564 atomic regions from SNP 154972 to 155572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,963 DEBUG Processing 254/536 atomic regions from SNP 76153 to 76754 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,018 DEBUG Processing 518/564 atomic regions from SNP 155272 to 155872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,190 DEBUG Processing 255/536 atomic regions from SNP 76454 to 77055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,246 DEBUG Processing 519/564 atomic regions from SNP 155572 to 156172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,264 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:58:18,266 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:58:18,414 DEBUG Processing 256/536 atomic regions from SNP 76755 to 77356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,481 DEBUG Processing 520/564 atomic regions from SNP 155872 to 156472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,640 DEBUG Processing 257/536 atomic regions from SNP 77056 to 77656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,714 DEBUG Processing 521/564 atomic regions from SNP 156172 to 156772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,838 DEBUG Processing 258/536 atomic regions from SNP 77356 to 77956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,940 DEBUG Processing 522/564 atomic regions from SNP 156472 to 157072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,058 DEBUG Processing 259/536 atomic regions from SNP 77656 to 78256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,160 DEBUG Processing 523/564 atomic regions from SNP 156772 to 157372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,260 DEBUG Processing 260/536 atomic regions from SNP 77956 to 78556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,395 DEBUG Processing 524/564 atomic regions from SNP 157072 to 157672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,453 DEBUG Processing 261/536 atomic regions from SNP 78256 to 78856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,631 DEBUG Processing 525/564 atomic regions from SNP 157372 to 157972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,644 DEBUG Processing 262/536 atomic regions from SNP 78556 to 79156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,839 DEBUG Processing 263/536 atomic regions from SNP 78856 to 79456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,875 DEBUG Processing 526/564 atomic regions from SNP 157672 to 158272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,031 DEBUG Processing 264/536 atomic regions from SNP 79156 to 79756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,042 DEBUG chrY total SNP count: 109 2025-01-31 09:58:20,042 DEBUG chrY length: 91744698 2025-01-31 09:58:20,042 DEBUG ----------------------------------------- 2025-01-31 09:58:20,042 INFO Processing SNPs in chrY 2025-01-31 09:58:20,043 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 14), (14, 22), (22, 33), (33, 47), (47, 56), (56, 64), (64, 66), (66, 109)] 2025-01-31 09:58:20,044 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [14, 8, 11, 14, 9, 8, 2, 43] SNP IDs counts: [14, 8, 11, 14, 9, 8, 2, 43] Critical gap: 15834bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[1.01Mbp], 1.01Mbp[1.35Mbp], 2.37Mbp[1.59Mbp], 3.97Mbp[0.03Mbp], 4.01Mbp[0.32Mbp], 4.34Mbp[6.37Mbp], 10.71Mbp[12.01Mbp], 22.72Mbp[68.00Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:58:20,044 DEBUG chrY time: 0.0013250010088086128 s 2025-01-31 09:58:20,120 DEBUG Processing 527/564 atomic regions from SNP 157972 to 158572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,227 DEBUG Processing 265/536 atomic regions from SNP 79456 to 80056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,354 DEBUG Processing 528/564 atomic regions from SNP 158272 to 158872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,413 DEBUG Processing 266/536 atomic regions from SNP 79756 to 80356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,575 DEBUG Processing 529/564 atomic regions from SNP 158572 to 159172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,605 DEBUG Processing 267/536 atomic regions from SNP 80056 to 80656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,799 DEBUG Processing 268/536 atomic regions from SNP 80356 to 80956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,816 DEBUG Processing 530/564 atomic regions from SNP 158872 to 159472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,000 DEBUG Processing 269/536 atomic regions from SNP 80656 to 81256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,059 DEBUG Processing 531/564 atomic regions from SNP 159172 to 159772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,198 DEBUG Processing 270/536 atomic regions from SNP 80956 to 81556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,292 DEBUG Processing 532/564 atomic regions from SNP 159472 to 160072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,394 DEBUG Processing 271/536 atomic regions from SNP 81256 to 81856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,527 DEBUG Processing 533/564 atomic regions from SNP 159772 to 160372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,587 DEBUG Processing 272/536 atomic regions from SNP 81556 to 82156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,738 DEBUG Processing 534/564 atomic regions from SNP 160072 to 160672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,777 DEBUG Processing 273/536 atomic regions from SNP 81856 to 82456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,960 DEBUG Processing 535/564 atomic regions from SNP 160372 to 160972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,966 DEBUG Processing 274/536 atomic regions from SNP 82156 to 82756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,156 DEBUG Processing 275/536 atomic regions from SNP 82456 to 83056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,172 DEBUG Processing 536/564 atomic regions from SNP 160672 to 161272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,353 DEBUG Processing 276/536 atomic regions from SNP 82756 to 83356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,391 DEBUG Processing 537/564 atomic regions from SNP 160972 to 161572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,549 DEBUG Processing 277/536 atomic regions from SNP 83056 to 83656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,629 DEBUG Processing 538/564 atomic regions from SNP 161272 to 161872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,733 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:58:22,740 DEBUG Processing 278/536 atomic regions from SNP 83356 to 83956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,866 DEBUG Processing 539/564 atomic regions from SNP 161572 to 162172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,935 DEBUG Processing 279/536 atomic regions from SNP 83656 to 84256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,105 DEBUG Processing 540/564 atomic regions from SNP 161872 to 162472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,136 DEBUG Processing 280/536 atomic regions from SNP 83956 to 84556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,339 DEBUG Processing 281/536 atomic regions from SNP 84256 to 84856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,347 DEBUG Processing 541/564 atomic regions from SNP 162172 to 162772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,532 DEBUG Processing 282/536 atomic regions from SNP 84556 to 85156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,591 DEBUG Processing 542/564 atomic regions from SNP 162472 to 163072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,722 DEBUG Processing 283/536 atomic regions from SNP 84856 to 85456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,825 DEBUG Processing 543/564 atomic regions from SNP 162772 to 163372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,912 DEBUG Processing 284/536 atomic regions from SNP 85156 to 85756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,050 DEBUG Processing 544/564 atomic regions from SNP 163072 to 163672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,101 DEBUG Processing 285/536 atomic regions from SNP 85456 to 86056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,267 DEBUG Processing 545/564 atomic regions from SNP 163372 to 163972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,296 DEBUG Processing 286/536 atomic regions from SNP 85756 to 86356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,474 DEBUG Processing 546/564 atomic regions from SNP 163672 to 164272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,488 DEBUG Processing 287/536 atomic regions from SNP 86056 to 86656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,681 DEBUG Processing 288/536 atomic regions from SNP 86356 to 86956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,686 DEBUG Processing 547/564 atomic regions from SNP 163972 to 164572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,884 DEBUG Processing 289/536 atomic regions from SNP 86656 to 87256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,904 DEBUG Processing 548/564 atomic regions from SNP 164272 to 164872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,080 DEBUG Processing 290/536 atomic regions from SNP 86956 to 87556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,111 DEBUG Processing 549/564 atomic regions from SNP 164572 to 165172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,281 DEBUG Processing 291/536 atomic regions from SNP 87256 to 87856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,308 DEBUG Processing 550/564 atomic regions from SNP 164872 to 165472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,323 DEBUG Subchromosome time: 170.35035763506312, subchromosome SNPs: 180626 2025-01-31 09:58:25,324 DEBUG Estimated BADs: [2.86, 8.59, 11.46, 2.86, 0.48, 1.43, 0.72, 2.86, 0.95, 2.86, 1.43, 0.41, 1.43, 2.86, 1.43, 0.95, 2.86, 8.59, 2.86, 5.73, 0.95, 2.86, 5.73, 1.43] SNP counts: [3408, 5313, 10022, 16691, 3375, 6001, 4490, 1217, 3584, 9374, 10748, 8385, 12312, 5400, 14994, 8012, 5181, 12174, 11917, 1700, 4231, 12058, 9211, 828] SNP IDs counts: [3408, 5313, 10022, 16691, 3375, 6001, 4490, 1217, 3584, 9374, 10748, 8385, 12312, 5400, 14994, 8012, 5181, 12174, 11917, 1700, 4231, 12058, 9211, 828] Critical gap: 545143bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.10Mbp, 8.07Mbp, 13.59Mbp, 23.16Mbp, 25.17Mbp, 28.45Mbp, 31.04Mbp, 31.71Mbp, 33.81Mbp, 39.11Mbp, 45.16Mbp, 50.18Mbp, 57.13Mbp, 60.04Mbp, 68.55Mbp, 73.05Mbp, 75.88Mbp, 82.38Mbp, 88.73Mbp, 89.64Mbp, 91.97Mbp, 98.51Mbp, 103.37Mbp, 104.04Mbp] 2025-01-31 09:58:25,324 DEBUG chr15 time: 170.3508663760731 s 2025-01-31 09:58:25,435 DEBUG chr15: Fitting background model for 24 segments 2025-01-31 09:58:25,473 DEBUG Processing 292/536 atomic regions from SNP 87556 to 88156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,512 DEBUG Processing 551/564 atomic regions from SNP 165172 to 165772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,674 DEBUG Processing 293/536 atomic regions from SNP 87856 to 88456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,732 DEBUG Processing 552/564 atomic regions from SNP 165472 to 166072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,872 DEBUG Processing 294/536 atomic regions from SNP 88156 to 88756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,968 DEBUG Processing 553/564 atomic regions from SNP 165772 to 166372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,066 DEBUG Processing 295/536 atomic regions from SNP 88456 to 89056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,207 DEBUG Processing 554/564 atomic regions from SNP 166072 to 166672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,269 DEBUG Processing 296/536 atomic regions from SNP 88756 to 89356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,425 DEBUG Processing 555/564 atomic regions from SNP 166372 to 166972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,471 DEBUG Processing 297/536 atomic regions from SNP 89056 to 89656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,637 DEBUG Processing 556/564 atomic regions from SNP 166672 to 167272 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,674 DEBUG Processing 298/536 atomic regions from SNP 89356 to 89956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,859 DEBUG Processing 557/564 atomic regions from SNP 166972 to 167572 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,871 DEBUG Processing 299/536 atomic regions from SNP 89656 to 90256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,066 DEBUG Processing 300/536 atomic regions from SNP 89956 to 90556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,099 DEBUG Processing 558/564 atomic regions from SNP 167272 to 167872 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,257 DEBUG Processing 301/536 atomic regions from SNP 90256 to 90856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,320 DEBUG Processing 559/564 atomic regions from SNP 167572 to 168172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,447 DEBUG Processing 302/536 atomic regions from SNP 90556 to 91156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,528 DEBUG Processing 560/564 atomic regions from SNP 167872 to 168472 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,636 DEBUG Processing 303/536 atomic regions from SNP 90856 to 91456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,745 DEBUG Processing 561/564 atomic regions from SNP 168172 to 168772 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,874 DEBUG Processing 304/536 atomic regions from SNP 91156 to 91756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,964 DEBUG Processing 562/564 atomic regions from SNP 168472 to 169072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,107 DEBUG Processing 305/536 atomic regions from SNP 91456 to 92056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,181 DEBUG Processing 563/564 atomic regions from SNP 168772 to 169372 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,334 DEBUG Processing 306/536 atomic regions from SNP 91756 to 92356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,401 DEBUG Processing 564/564 atomic regions from SNP 169072 to 169672 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,554 DEBUG Processing 307/536 atomic regions from SNP 92056 to 92656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,564 DEBUG Unique SNPs positions in subchromosome 1: 169673 2025-01-31 09:58:28,773 DEBUG Processing 308/536 atomic regions from SNP 92356 to 92956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,005 DEBUG Processing 309/536 atomic regions from SNP 92656 to 93256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,234 DEBUG Processing 310/536 atomic regions from SNP 92956 to 93556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,459 DEBUG Processing 311/536 atomic regions from SNP 93256 to 93856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,673 DEBUG Processing 312/536 atomic regions from SNP 93556 to 94156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,885 DEBUG Processing 313/536 atomic regions from SNP 93856 to 94456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,087 DEBUG Processing 314/536 atomic regions from SNP 94156 to 94756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,289 DEBUG Processing 315/536 atomic regions from SNP 94456 to 95056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,482 DEBUG Processing 316/536 atomic regions from SNP 94756 to 95356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,675 DEBUG Processing 317/536 atomic regions from SNP 95056 to 95656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,869 DEBUG Processing 318/536 atomic regions from SNP 95356 to 95956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,055 DEBUG Processing 319/536 atomic regions from SNP 95656 to 96256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,244 DEBUG Processing 320/536 atomic regions from SNP 95956 to 96556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,437 DEBUG Processing 321/536 atomic regions from SNP 96256 to 96856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,637 DEBUG Processing 322/536 atomic regions from SNP 96556 to 97156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,840 DEBUG Processing 323/536 atomic regions from SNP 96856 to 97456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,038 DEBUG Processing 324/536 atomic regions from SNP 97156 to 97756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,230 DEBUG Processing 325/536 atomic regions from SNP 97456 to 98056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,422 DEBUG Processing 326/536 atomic regions from SNP 97756 to 98356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,464 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:58:32,465 DEBUG chr18: Signal quantile: 0.994. signal threshold: 15. Best RMSEA: 0.023 2025-01-31 09:58:32,619 DEBUG Processing 327/536 atomic regions from SNP 98056 to 98656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,818 DEBUG Processing 328/536 atomic regions from SNP 98356 to 98956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,016 DEBUG Processing 329/536 atomic regions from SNP 98656 to 99256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,214 DEBUG Processing 330/536 atomic regions from SNP 98956 to 99556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,421 DEBUG Processing 331/536 atomic regions from SNP 99256 to 99856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,623 DEBUG Processing 332/536 atomic regions from SNP 99556 to 100156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,817 DEBUG Processing 333/536 atomic regions from SNP 99856 to 100456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,894 DEBUG Subchromosome time: 152.29401532700285, subchromosome SNPs: 169673 2025-01-31 09:58:33,895 DEBUG Estimated BADs: [4.48, 1.12, 2.24, 4.48, 2.24, 6.72, 0.75, 4.48, 1.12, 2.24, 4.48, 1.12, 2.24, 0.75, 2.24, 0.56, 1.12, 8.96, 2.24, 8.96, 4.48] SNP counts: [4914, 3307, 4682, 7653, 4376, 3556, 1082, 6653, 7808, 8758, 12585, 18778, 2208, 8200, 8310, 6000, 40807, 392, 3883, 8936, 6785] SNP IDs counts: [4914, 3307, 4682, 7653, 4376, 3556, 1082, 6653, 7808, 8758, 12585, 18778, 2208, 8200, 8310, 6000, 40807, 392, 3883, 8936, 6785] Critical gap: 529649bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.09Mbp], 6.06Mbp, 7.83Mbp, 10.41Mbp, 14.55Mbp, 17.12Mbp, 19.02Mbp, 19.73Mbp, 23.37Mbp, 27.66Mbp, 32.42Mbp, 39.14Mbp, 49.77Mbp, 50.95Mbp, 55.82Mbp, 60.63Mbp, 64.18Mbp, 87.41Mbp, 87.62Mbp, 89.77Mbp, 94.49Mbp, 98.21Mbp] 2025-01-31 09:58:33,895 DEBUG chr16 time: 152.29459173395298 s 2025-01-31 09:58:34,017 DEBUG chr16: Fitting background model for 21 segments 2025-01-31 09:58:34,020 DEBUG Processing 334/536 atomic regions from SNP 100156 to 100756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,136 DEBUG chr18 total SNP count: 157191 2025-01-31 09:58:34,137 DEBUG chr18 length: 90702639 2025-01-31 09:58:34,137 DEBUG ----------------------------------------- 2025-01-31 09:58:34,137 INFO Processing SNPs in chr18 2025-01-31 09:58:34,220 DEBUG Processing 335/536 atomic regions from SNP 100456 to 101056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,292 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 157191)] 2025-01-31 09:58:34,400 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:34,417 DEBUG Processing 336/536 atomic regions from SNP 100756 to 101356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,611 DEBUG Processing 337/536 atomic regions from SNP 101056 to 101656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,808 DEBUG Processing 338/536 atomic regions from SNP 101356 to 101956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,003 DEBUG Processing 339/536 atomic regions from SNP 101656 to 102256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,191 DEBUG Processing 340/536 atomic regions from SNP 101956 to 102556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,376 DEBUG Processing 341/536 atomic regions from SNP 102256 to 102856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,564 DEBUG Processing 342/536 atomic regions from SNP 102556 to 103156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,752 DEBUG Processing 343/536 atomic regions from SNP 102856 to 103456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,950 DEBUG Processing 344/536 atomic regions from SNP 103156 to 103756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,146 DEBUG Processing 345/536 atomic regions from SNP 103456 to 104056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,340 DEBUG Processing 346/536 atomic regions from SNP 103756 to 104356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,537 DEBUG Processing 347/536 atomic regions from SNP 104056 to 104656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,738 DEBUG Processing 348/536 atomic regions from SNP 104356 to 104956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,941 DEBUG Processing 349/536 atomic regions from SNP 104656 to 105256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,137 DEBUG Processing 350/536 atomic regions from SNP 104956 to 105556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,336 DEBUG Processing 351/536 atomic regions from SNP 105256 to 105856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,550 DEBUG Processing 352/536 atomic regions from SNP 105556 to 106156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,770 DEBUG Processing 353/536 atomic regions from SNP 105856 to 106456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,978 DEBUG Processing 354/536 atomic regions from SNP 106156 to 106756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,185 DEBUG Processing 355/536 atomic regions from SNP 106456 to 107056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,390 DEBUG Processing 356/536 atomic regions from SNP 106756 to 107356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,596 DEBUG Processing 357/536 atomic regions from SNP 107056 to 107656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,796 DEBUG Processing 358/536 atomic regions from SNP 107356 to 107956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,002 DEBUG Processing 359/536 atomic regions from SNP 107656 to 108256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,217 DEBUG Processing 360/536 atomic regions from SNP 107956 to 108556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,419 DEBUG Processing 361/536 atomic regions from SNP 108256 to 108856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,642 DEBUG Processing 362/536 atomic regions from SNP 108556 to 109156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,865 DEBUG Processing 363/536 atomic regions from SNP 108856 to 109456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,094 DEBUG Processing 364/536 atomic regions from SNP 109156 to 109756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,317 DEBUG Processing 365/536 atomic regions from SNP 109456 to 110056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,525 DEBUG Processing 366/536 atomic regions from SNP 109756 to 110356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,726 DEBUG Processing 367/536 atomic regions from SNP 110056 to 110656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,927 DEBUG Processing 368/536 atomic regions from SNP 110356 to 110956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,128 DEBUG Processing 369/536 atomic regions from SNP 110656 to 111256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,327 DEBUG Processing 370/536 atomic regions from SNP 110956 to 111556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,524 DEBUG Processing 371/536 atomic regions from SNP 111256 to 111856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,725 DEBUG Processing 372/536 atomic regions from SNP 111556 to 112156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,926 DEBUG Processing 373/536 atomic regions from SNP 111856 to 112456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,129 DEBUG Processing 374/536 atomic regions from SNP 112156 to 112756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,334 DEBUG Processing 375/536 atomic regions from SNP 112456 to 113056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,540 DEBUG Processing 376/536 atomic regions from SNP 112756 to 113356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,747 DEBUG Processing 377/536 atomic regions from SNP 113056 to 113656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,948 DEBUG Processing 378/536 atomic regions from SNP 113356 to 113956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,150 DEBUG Processing 379/536 atomic regions from SNP 113656 to 114256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,350 DEBUG Processing 380/536 atomic regions from SNP 113956 to 114556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,556 DEBUG Processing 381/536 atomic regions from SNP 114256 to 114856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,761 DEBUG Processing 382/536 atomic regions from SNP 114556 to 115156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,962 DEBUG Processing 383/536 atomic regions from SNP 114856 to 115456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,164 DEBUG Processing 384/536 atomic regions from SNP 115156 to 115756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,374 DEBUG Processing 385/536 atomic regions from SNP 115456 to 116056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,570 DEBUG Processing 386/536 atomic regions from SNP 115756 to 116356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,765 DEBUG Processing 387/536 atomic regions from SNP 116056 to 116656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,964 DEBUG Processing 388/536 atomic regions from SNP 116356 to 116956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,167 DEBUG Processing 389/536 atomic regions from SNP 116656 to 117256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,367 DEBUG Processing 390/536 atomic regions from SNP 116956 to 117556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,566 DEBUG Processing 391/536 atomic regions from SNP 117256 to 117856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,762 DEBUG Processing 392/536 atomic regions from SNP 117556 to 118156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,970 DEBUG Processing 393/536 atomic regions from SNP 117856 to 118456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,184 DEBUG Processing 394/536 atomic regions from SNP 118156 to 118756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,408 DEBUG Processing 395/536 atomic regions from SNP 118456 to 119056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,629 DEBUG Processing 396/536 atomic regions from SNP 118756 to 119356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,843 DEBUG Processing 397/536 atomic regions from SNP 119056 to 119656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,075 DEBUG Processing 398/536 atomic regions from SNP 119356 to 119956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,273 DEBUG Processing 399/536 atomic regions from SNP 119656 to 120256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,466 DEBUG Processing 400/536 atomic regions from SNP 119956 to 120556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,661 DEBUG Processing 401/536 atomic regions from SNP 120256 to 120856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,856 DEBUG Processing 402/536 atomic regions from SNP 120556 to 121156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,052 DEBUG Processing 403/536 atomic regions from SNP 120856 to 121456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,249 DEBUG Processing 404/536 atomic regions from SNP 121156 to 121756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,448 DEBUG Processing 405/536 atomic regions from SNP 121456 to 122056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,651 DEBUG Processing 406/536 atomic regions from SNP 121756 to 122356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,770 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:58:48,849 DEBUG Processing 407/536 atomic regions from SNP 122056 to 122656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,054 DEBUG Processing 408/536 atomic regions from SNP 122356 to 122956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,251 DEBUG Processing 409/536 atomic regions from SNP 122656 to 123256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,447 DEBUG Processing 410/536 atomic regions from SNP 122956 to 123556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,648 DEBUG Processing 411/536 atomic regions from SNP 123256 to 123856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,850 DEBUG Processing 412/536 atomic regions from SNP 123556 to 124156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,052 DEBUG Processing 413/536 atomic regions from SNP 123856 to 124456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,255 DEBUG Processing 414/536 atomic regions from SNP 124156 to 124756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,464 DEBUG Processing 415/536 atomic regions from SNP 124456 to 125056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,667 DEBUG Processing 416/536 atomic regions from SNP 124756 to 125356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,863 DEBUG Processing 417/536 atomic regions from SNP 125056 to 125656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,060 DEBUG Processing 418/536 atomic regions from SNP 125356 to 125956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,268 DEBUG Processing 419/536 atomic regions from SNP 125656 to 126256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,471 DEBUG Processing 420/536 atomic regions from SNP 125956 to 126556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,669 DEBUG Processing 421/536 atomic regions from SNP 126256 to 126856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,869 DEBUG Processing 422/536 atomic regions from SNP 126556 to 127156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,065 DEBUG Processing 423/536 atomic regions from SNP 126856 to 127456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,256 DEBUG Processing 424/536 atomic regions from SNP 127156 to 127756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,447 DEBUG Processing 425/536 atomic regions from SNP 127456 to 128056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,643 DEBUG Processing 426/536 atomic regions from SNP 127756 to 128356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,837 DEBUG Processing 427/536 atomic regions from SNP 128056 to 128656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,024 DEBUG Processing 428/536 atomic regions from SNP 128356 to 128956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,214 DEBUG Processing 429/536 atomic regions from SNP 128656 to 129256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,407 DEBUG Processing 430/536 atomic regions from SNP 128956 to 129556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,598 DEBUG Processing 431/536 atomic regions from SNP 129256 to 129856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,795 DEBUG Processing 432/536 atomic regions from SNP 129556 to 130156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,894 DEBUG Segmenting atomic regions: 2025-01-31 09:58:53,962 DEBUG Processing 1/522 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,994 DEBUG Processing 433/536 atomic regions from SNP 129856 to 130456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,164 DEBUG Processing 2/522 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,197 DEBUG Processing 434/536 atomic regions from SNP 130156 to 130756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,353 DEBUG Processing 3/522 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,395 DEBUG Processing 435/536 atomic regions from SNP 130456 to 131056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,545 DEBUG Processing 4/522 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,586 DEBUG Processing 436/536 atomic regions from SNP 130756 to 131356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,739 DEBUG Processing 5/522 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,781 DEBUG Processing 437/536 atomic regions from SNP 131056 to 131656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,938 DEBUG Processing 6/522 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,981 DEBUG Processing 438/536 atomic regions from SNP 131356 to 131956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,135 DEBUG Processing 7/522 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,181 DEBUG Processing 439/536 atomic regions from SNP 131656 to 132256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,329 DEBUG Processing 8/522 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,382 DEBUG Processing 440/536 atomic regions from SNP 131956 to 132556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,526 DEBUG Processing 9/522 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,579 DEBUG Processing 441/536 atomic regions from SNP 132256 to 132856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,724 DEBUG Processing 10/522 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,765 DEBUG Processing 442/536 atomic regions from SNP 132556 to 133156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,926 DEBUG Processing 11/522 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,962 DEBUG Processing 443/536 atomic regions from SNP 132856 to 133456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,180 DEBUG Processing 12/522 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,186 DEBUG Processing 444/536 atomic regions from SNP 133156 to 133756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,387 DEBUG Processing 445/536 atomic regions from SNP 133456 to 134056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,388 DEBUG Processing 13/522 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,585 DEBUG Processing 446/536 atomic regions from SNP 133756 to 134356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,616 DEBUG Processing 14/522 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,793 DEBUG Processing 447/536 atomic regions from SNP 134056 to 134656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,837 DEBUG Processing 15/522 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,010 DEBUG Processing 448/536 atomic regions from SNP 134356 to 134956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,058 DEBUG Processing 16/522 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,227 DEBUG Processing 449/536 atomic regions from SNP 134656 to 135256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,256 DEBUG Processing 17/522 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,428 DEBUG Processing 450/536 atomic regions from SNP 134956 to 135556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,457 DEBUG Processing 18/522 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,635 DEBUG Processing 451/536 atomic regions from SNP 135256 to 135856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,659 DEBUG Processing 19/522 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,850 DEBUG Processing 452/536 atomic regions from SNP 135556 to 136156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,871 DEBUG Processing 20/522 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,020 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:58:58,022 DEBUG chr19: Signal quantile: 0.988. signal threshold: 16. Best RMSEA: 0.017 2025-01-31 09:58:58,055 DEBUG Processing 453/536 atomic regions from SNP 135856 to 136456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,077 DEBUG Processing 21/522 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,256 DEBUG Processing 454/536 atomic regions from SNP 136156 to 136756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,278 DEBUG Processing 22/522 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,454 DEBUG Processing 455/536 atomic regions from SNP 136456 to 137056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,476 DEBUG Processing 23/522 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,646 DEBUG Processing 456/536 atomic regions from SNP 136756 to 137356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,671 DEBUG Processing 24/522 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,847 DEBUG Processing 457/536 atomic regions from SNP 137056 to 137656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,873 DEBUG Processing 25/522 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,041 DEBUG Processing 458/536 atomic regions from SNP 137356 to 137956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,065 DEBUG Processing 26/522 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,218 DEBUG chr19 total SNP count: 105358 2025-01-31 09:58:59,219 DEBUG chr19 length: 61431566 2025-01-31 09:58:59,219 DEBUG ----------------------------------------- 2025-01-31 09:58:59,219 INFO Processing SNPs in chr19 2025-01-31 09:58:59,246 DEBUG Processing 459/536 atomic regions from SNP 137656 to 138256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,282 DEBUG Processing 27/522 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,336 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 105358)] 2025-01-31 09:58:59,418 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:59,473 DEBUG Processing 460/536 atomic regions from SNP 137956 to 138556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,506 DEBUG Processing 28/522 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,678 DEBUG Processing 461/536 atomic regions from SNP 138256 to 138856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,703 DEBUG Processing 29/522 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,882 DEBUG Processing 462/536 atomic regions from SNP 138556 to 139156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,907 DEBUG Processing 30/522 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,085 DEBUG Processing 463/536 atomic regions from SNP 138856 to 139456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,112 DEBUG Processing 31/522 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,290 DEBUG Processing 464/536 atomic regions from SNP 139156 to 139756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,318 DEBUG Processing 32/522 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,488 DEBUG Processing 465/536 atomic regions from SNP 139456 to 140056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,520 DEBUG Processing 33/522 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,686 DEBUG Processing 466/536 atomic regions from SNP 139756 to 140356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,719 DEBUG Processing 34/522 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,884 DEBUG Processing 467/536 atomic regions from SNP 140056 to 140656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,915 DEBUG Processing 35/522 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,083 DEBUG Processing 468/536 atomic regions from SNP 140356 to 140956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,119 DEBUG Processing 36/522 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,282 DEBUG Processing 469/536 atomic regions from SNP 140656 to 141256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,336 DEBUG Processing 37/522 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,496 DEBUG Processing 470/536 atomic regions from SNP 140956 to 141556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,540 DEBUG Processing 38/522 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,708 DEBUG Processing 471/536 atomic regions from SNP 141256 to 141856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,740 DEBUG Processing 39/522 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,921 DEBUG Processing 472/536 atomic regions from SNP 141556 to 142156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,938 DEBUG Processing 40/522 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,139 DEBUG Processing 473/536 atomic regions from SNP 141856 to 142456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,145 DEBUG Processing 41/522 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,354 DEBUG Processing 42/522 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,361 DEBUG Processing 474/536 atomic regions from SNP 142156 to 142756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,558 DEBUG Processing 43/522 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,566 DEBUG Processing 475/536 atomic regions from SNP 142456 to 143056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,760 DEBUG Processing 44/522 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,768 DEBUG Processing 476/536 atomic regions from SNP 142756 to 143356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,980 DEBUG Processing 477/536 atomic regions from SNP 143056 to 143656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,984 DEBUG Processing 45/522 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,192 DEBUG Processing 46/522 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,216 DEBUG Processing 478/536 atomic regions from SNP 143356 to 143956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,398 DEBUG Processing 47/522 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,442 DEBUG Processing 479/536 atomic regions from SNP 143656 to 144256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,596 DEBUG Processing 48/522 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,649 DEBUG Processing 480/536 atomic regions from SNP 143956 to 144556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,793 DEBUG Processing 49/522 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,859 DEBUG Processing 481/536 atomic regions from SNP 144256 to 144856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,992 DEBUG Processing 50/522 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,066 DEBUG Processing 482/536 atomic regions from SNP 144556 to 145156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,195 DEBUG Processing 51/522 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,271 DEBUG Processing 483/536 atomic regions from SNP 144856 to 145456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,403 DEBUG Processing 52/522 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,475 DEBUG Processing 484/536 atomic regions from SNP 145156 to 145756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,618 DEBUG Processing 53/522 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,682 DEBUG Processing 485/536 atomic regions from SNP 145456 to 146056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,834 DEBUG Processing 54/522 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,907 DEBUG Processing 486/536 atomic regions from SNP 145756 to 146356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,034 DEBUG Processing 55/522 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,148 DEBUG Processing 487/536 atomic regions from SNP 146056 to 146656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,229 DEBUG Processing 56/522 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,376 DEBUG Processing 488/536 atomic regions from SNP 146356 to 146956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,430 DEBUG Processing 57/522 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,586 DEBUG Processing 489/536 atomic regions from SNP 146656 to 147256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,636 DEBUG Processing 58/522 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,791 DEBUG Processing 490/536 atomic regions from SNP 146956 to 147556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,853 DEBUG Processing 59/522 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,000 DEBUG Processing 491/536 atomic regions from SNP 147256 to 147856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,055 DEBUG Processing 60/522 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,213 DEBUG Processing 492/536 atomic regions from SNP 147556 to 148156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,258 DEBUG Processing 61/522 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,426 DEBUG Processing 493/536 atomic regions from SNP 147856 to 148456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,460 DEBUG Processing 62/522 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,646 DEBUG Processing 494/536 atomic regions from SNP 148156 to 148756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,664 DEBUG Processing 63/522 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,848 DEBUG Processing 495/536 atomic regions from SNP 148456 to 149056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,866 DEBUG Processing 64/522 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,060 DEBUG Processing 496/536 atomic regions from SNP 148756 to 149356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,076 DEBUG Processing 65/522 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,280 DEBUG Processing 66/522 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,282 DEBUG Processing 497/536 atomic regions from SNP 149056 to 149656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,488 DEBUG Processing 67/522 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,509 DEBUG Processing 498/536 atomic regions from SNP 149356 to 149956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,693 DEBUG Processing 68/522 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,723 DEBUG Processing 499/536 atomic regions from SNP 149656 to 150256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,900 DEBUG Processing 69/522 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,939 DEBUG Processing 500/536 atomic regions from SNP 149956 to 150556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,108 DEBUG Processing 70/522 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,165 DEBUG Processing 501/536 atomic regions from SNP 150256 to 150856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,316 DEBUG Processing 71/522 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,376 DEBUG Processing 502/536 atomic regions from SNP 150556 to 151156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,521 DEBUG Processing 72/522 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,585 DEBUG Processing 503/536 atomic regions from SNP 150856 to 151456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,721 DEBUG Processing 73/522 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,794 DEBUG Processing 504/536 atomic regions from SNP 151156 to 151756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,919 DEBUG Processing 74/522 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,007 DEBUG Processing 505/536 atomic regions from SNP 151456 to 152056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,122 DEBUG Processing 75/522 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,214 DEBUG Processing 506/536 atomic regions from SNP 151756 to 152356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,326 DEBUG Processing 76/522 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,420 DEBUG Processing 507/536 atomic regions from SNP 152056 to 152656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,532 DEBUG Processing 77/522 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,633 DEBUG Processing 508/536 atomic regions from SNP 152356 to 152956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,734 DEBUG Processing 78/522 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,837 DEBUG Processing 509/536 atomic regions from SNP 152656 to 153256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,942 DEBUG Processing 79/522 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,038 DEBUG Processing 510/536 atomic regions from SNP 152956 to 153556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,149 DEBUG Processing 80/522 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,241 DEBUG Processing 511/536 atomic regions from SNP 153256 to 153856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,355 DEBUG Processing 81/522 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,445 DEBUG Processing 512/536 atomic regions from SNP 153556 to 154156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,556 DEBUG Processing 82/522 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,645 DEBUG Processing 513/536 atomic regions from SNP 153856 to 154456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,754 DEBUG Processing 83/522 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,848 DEBUG Processing 514/536 atomic regions from SNP 154156 to 154756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,958 DEBUG Processing 84/522 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,051 DEBUG Processing 515/536 atomic regions from SNP 154456 to 155056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,162 DEBUG Processing 85/522 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,254 DEBUG Processing 516/536 atomic regions from SNP 154756 to 155356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,366 DEBUG Processing 86/522 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,458 DEBUG Processing 517/536 atomic regions from SNP 155056 to 155656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,571 DEBUG Processing 87/522 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,662 DEBUG Processing 518/536 atomic regions from SNP 155356 to 155956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,777 DEBUG Processing 88/522 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,862 DEBUG Processing 519/536 atomic regions from SNP 155656 to 156256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,981 DEBUG Processing 89/522 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,067 DEBUG Processing 520/536 atomic regions from SNP 155956 to 156556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,185 DEBUG Processing 90/522 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,273 DEBUG Processing 521/536 atomic regions from SNP 156256 to 156856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,395 DEBUG Processing 91/522 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,480 DEBUG Processing 522/536 atomic regions from SNP 156556 to 157156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,604 DEBUG Processing 92/522 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,683 DEBUG Processing 523/536 atomic regions from SNP 156856 to 157456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,807 DEBUG Processing 93/522 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,890 DEBUG Processing 524/536 atomic regions from SNP 157156 to 157756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,006 DEBUG Processing 94/522 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,092 DEBUG Processing 525/536 atomic regions from SNP 157456 to 158056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,209 DEBUG Processing 95/522 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,294 DEBUG Processing 526/536 atomic regions from SNP 157756 to 158356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,409 DEBUG Processing 96/522 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,452 DEBUG Segmenting atomic regions: 2025-01-31 09:59:13,494 DEBUG Processing 527/536 atomic regions from SNP 158056 to 158656 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,501 DEBUG Processing 1/350 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,616 DEBUG Processing 97/522 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,700 DEBUG Processing 528/536 atomic regions from SNP 158356 to 158956 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,723 DEBUG Processing 2/350 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,814 DEBUG Processing 98/522 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,899 DEBUG Processing 529/536 atomic regions from SNP 158656 to 159256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,922 DEBUG Processing 3/350 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,016 DEBUG Processing 99/522 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,101 DEBUG Processing 530/536 atomic regions from SNP 158956 to 159556 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,131 DEBUG Processing 4/350 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,215 DEBUG Processing 100/522 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,299 DEBUG Processing 531/536 atomic regions from SNP 159256 to 159856 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,343 DEBUG Processing 5/350 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,412 DEBUG Processing 101/522 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,495 DEBUG Processing 532/536 atomic regions from SNP 159556 to 160156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,565 DEBUG Processing 6/350 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,612 DEBUG Processing 102/522 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,693 DEBUG Processing 533/536 atomic regions from SNP 159856 to 160456 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,786 DEBUG Processing 7/350 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,821 DEBUG Processing 103/522 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,890 DEBUG Processing 534/536 atomic regions from SNP 160156 to 160756 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,003 DEBUG Processing 8/350 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,024 DEBUG Processing 104/522 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,099 DEBUG Processing 535/536 atomic regions from SNP 160456 to 161056 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,214 DEBUG Processing 9/350 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,240 DEBUG Processing 105/522 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,309 DEBUG Processing 536/536 atomic regions from SNP 160756 to 161356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,425 DEBUG Processing 10/350 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,441 DEBUG Unique SNPs positions in subchromosome 1: 161357 2025-01-31 09:59:15,473 DEBUG Processing 106/522 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,620 DEBUG Processing 11/350 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,678 DEBUG Processing 107/522 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,813 DEBUG Processing 12/350 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,865 DEBUG Processing 108/522 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,015 DEBUG Processing 13/350 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,058 DEBUG Processing 109/522 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,200 DEBUG Processing 14/350 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,244 DEBUG Processing 110/522 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,395 DEBUG Processing 15/350 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,428 DEBUG Processing 111/522 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,590 DEBUG Processing 16/350 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,619 DEBUG Processing 112/522 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,791 DEBUG Processing 17/350 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,803 DEBUG Processing 113/522 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,985 DEBUG Processing 114/522 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,992 DEBUG Processing 18/350 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,169 DEBUG Processing 115/522 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,197 DEBUG Processing 19/350 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,354 DEBUG Processing 116/522 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,402 DEBUG Processing 20/350 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,535 DEBUG Processing 117/522 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,605 DEBUG Processing 21/350 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,714 DEBUG Processing 118/522 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,794 DEBUG Processing 22/350 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,889 DEBUG Processing 119/522 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,970 DEBUG Processing 23/350 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,065 DEBUG Processing 120/522 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,167 DEBUG Processing 24/350 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,242 DEBUG Processing 121/522 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,359 DEBUG Processing 25/350 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,430 DEBUG Processing 122/522 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,555 DEBUG Processing 26/350 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,625 DEBUG Processing 123/522 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,751 DEBUG Processing 27/350 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,830 DEBUG Processing 124/522 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,936 DEBUG Processing 28/350 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,030 DEBUG Processing 125/522 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,100 DEBUG Processing 29/350 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,211 DEBUG Processing 126/522 atomic regions from SNP 37625 to 38226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,263 DEBUG Processing 30/350 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,408 DEBUG Processing 127/522 atomic regions from SNP 37926 to 38527 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,433 DEBUG Processing 31/350 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,596 DEBUG Processing 32/350 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,597 DEBUG Processing 128/522 atomic regions from SNP 38227 to 38828 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,768 DEBUG Processing 33/350 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,779 DEBUG Processing 129/522 atomic regions from SNP 38528 to 39129 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,968 DEBUG Processing 34/350 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,974 DEBUG Processing 130/522 atomic regions from SNP 38829 to 39430 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,169 DEBUG Processing 35/350 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,192 DEBUG Processing 131/522 atomic regions from SNP 39130 to 39731 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,414 DEBUG Processing 36/350 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,428 DEBUG Processing 132/522 atomic regions from SNP 39431 to 40032 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,583 DEBUG Processing 37/350 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,623 DEBUG Processing 133/522 atomic regions from SNP 39732 to 40333 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,751 DEBUG Processing 38/350 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,807 DEBUG Processing 134/522 atomic regions from SNP 40033 to 40634 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,926 DEBUG Processing 39/350 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,002 DEBUG Processing 135/522 atomic regions from SNP 40334 to 40935 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,104 DEBUG Subchromosome time: 137.53513402002864, subchromosome SNPs: 161357 2025-01-31 09:59:21,104 DEBUG Estimated BADs: [2.29, 1.15, 0.46, 1.15, 6.88, 4.59, 6.88, 0.76, 2.29, 4.59, 2.29, 1.15, 9.17, 0.76, 2.29, 0.57, 2.29, 4.59, 0.57] SNP counts: [21165, 3302, 4210, 4378, 11289, 7795, 5755, 9019, 5302, 7033, 3314, 8546, 2743, 6386, 27310, 2700, 15614, 5688, 9808] SNP IDs counts: [21165, 3302, 4210, 4378, 11289, 7795, 5755, 9019, 5302, 7033, 3314, 8546, 2743, 6386, 27310, 2700, 15614, 5688, 9808] Critical gap: 525208bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 15.91Mbp, 18.00Mbp, 20.53Mbp, 23.53Mbp, 29.48Mbp, 33.76Mbp, 37.03Mbp, 42.61Mbp, 45.45Mbp, 49.16Mbp, 50.91Mbp, 55.93Mbp, 57.36Mbp, 61.13Mbp, 76.10Mbp, 77.63Mbp, 86.15Mbp, 89.18Mbp, 94.99Mbp] 2025-01-31 09:59:21,104 DEBUG chr17 time: 137.53569251100998 s 2025-01-31 09:59:21,118 DEBUG Processing 40/350 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,190 DEBUG Processing 136/522 atomic regions from SNP 40635 to 41236 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,196 DEBUG chr17: Fitting background model for 19 segments 2025-01-31 09:59:21,316 DEBUG Processing 41/350 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,382 DEBUG Processing 137/522 atomic regions from SNP 40936 to 41537 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,502 DEBUG Processing 42/350 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,567 DEBUG Processing 138/522 atomic regions from SNP 41237 to 41838 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,685 DEBUG Processing 43/350 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,753 DEBUG Processing 139/522 atomic regions from SNP 41538 to 42139 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,874 DEBUG Processing 44/350 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,948 DEBUG Processing 140/522 atomic regions from SNP 41839 to 42440 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,065 DEBUG Processing 45/350 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,152 DEBUG Processing 141/522 atomic regions from SNP 42140 to 42741 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,260 DEBUG Processing 46/350 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,352 DEBUG Processing 142/522 atomic regions from SNP 42441 to 43042 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,437 DEBUG Processing 47/350 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,551 DEBUG Processing 143/522 atomic regions from SNP 42742 to 43343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,626 DEBUG Processing 48/350 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,750 DEBUG Processing 144/522 atomic regions from SNP 43043 to 43644 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,809 DEBUG Processing 49/350 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,940 DEBUG Processing 145/522 atomic regions from SNP 43344 to 43945 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,986 DEBUG Processing 50/350 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,135 DEBUG Processing 146/522 atomic regions from SNP 43645 to 44246 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,164 DEBUG Processing 51/350 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,325 DEBUG Processing 147/522 atomic regions from SNP 43946 to 44547 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,359 DEBUG Processing 52/350 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,511 DEBUG Processing 148/522 atomic regions from SNP 44247 to 44848 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,538 DEBUG Processing 53/350 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,700 DEBUG Processing 149/522 atomic regions from SNP 44548 to 45149 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,710 DEBUG Processing 54/350 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,884 DEBUG Processing 55/350 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,891 DEBUG Processing 150/522 atomic regions from SNP 44849 to 45450 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,066 DEBUG Processing 56/350 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,088 DEBUG Processing 151/522 atomic regions from SNP 45150 to 45751 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,249 DEBUG Processing 57/350 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,287 DEBUG Processing 152/522 atomic regions from SNP 45451 to 46052 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,423 DEBUG Processing 58/350 atomic regions from SNP 17157 to 17757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,480 DEBUG Processing 153/522 atomic regions from SNP 45752 to 46353 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,589 DEBUG Processing 59/350 atomic regions from SNP 17457 to 18057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,675 DEBUG Processing 154/522 atomic regions from SNP 46053 to 46654 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,753 DEBUG Processing 60/350 atomic regions from SNP 17757 to 18357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,872 DEBUG Processing 155/522 atomic regions from SNP 46354 to 46955 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,927 DEBUG Processing 61/350 atomic regions from SNP 18057 to 18657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,070 DEBUG Processing 156/522 atomic regions from SNP 46655 to 47256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,104 DEBUG Processing 62/350 atomic regions from SNP 18357 to 18957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,265 DEBUG Processing 157/522 atomic regions from SNP 46956 to 47557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,281 DEBUG Processing 63/350 atomic regions from SNP 18657 to 19257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,463 DEBUG Processing 64/350 atomic regions from SNP 18957 to 19557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,465 DEBUG Processing 158/522 atomic regions from SNP 47257 to 47858 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,645 DEBUG Processing 65/350 atomic regions from SNP 19257 to 19857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,666 DEBUG Processing 159/522 atomic regions from SNP 47558 to 48159 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,825 DEBUG Processing 66/350 atomic regions from SNP 19557 to 20157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,863 DEBUG Processing 160/522 atomic regions from SNP 47859 to 48460 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,002 DEBUG Processing 67/350 atomic regions from SNP 19857 to 20457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,069 DEBUG Processing 161/522 atomic regions from SNP 48160 to 48761 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,178 DEBUG Processing 68/350 atomic regions from SNP 20157 to 20757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,265 DEBUG Processing 162/522 atomic regions from SNP 48461 to 49062 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,353 DEBUG Processing 69/350 atomic regions from SNP 20457 to 21057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,458 DEBUG Processing 163/522 atomic regions from SNP 48762 to 49363 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,526 DEBUG Processing 70/350 atomic regions from SNP 20757 to 21357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,647 DEBUG Processing 164/522 atomic regions from SNP 49063 to 49664 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,713 DEBUG Processing 71/350 atomic regions from SNP 21057 to 21657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,835 DEBUG Processing 165/522 atomic regions from SNP 49364 to 49965 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,881 DEBUG Processing 72/350 atomic regions from SNP 21357 to 21957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,023 DEBUG Processing 166/522 atomic regions from SNP 49665 to 50266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,049 DEBUG Processing 73/350 atomic regions from SNP 21657 to 22257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,215 DEBUG Processing 167/522 atomic regions from SNP 49966 to 50567 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,236 DEBUG Processing 74/350 atomic regions from SNP 21957 to 22557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,407 DEBUG Processing 168/522 atomic regions from SNP 50267 to 50868 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,415 DEBUG Processing 75/350 atomic regions from SNP 22257 to 22857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,594 DEBUG Processing 76/350 atomic regions from SNP 22557 to 23157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,613 DEBUG Processing 169/522 atomic regions from SNP 50568 to 51169 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,768 DEBUG Processing 77/350 atomic regions from SNP 22857 to 23457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,830 DEBUG Processing 170/522 atomic regions from SNP 50869 to 51470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,936 DEBUG Processing 78/350 atomic regions from SNP 23157 to 23757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,036 DEBUG Processing 171/522 atomic regions from SNP 51170 to 51771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,110 DEBUG Processing 79/350 atomic regions from SNP 23457 to 24057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,227 DEBUG Processing 172/522 atomic regions from SNP 51471 to 52072 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,288 DEBUG Processing 80/350 atomic regions from SNP 23757 to 24357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,417 DEBUG Processing 173/522 atomic regions from SNP 51772 to 52373 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,468 DEBUG Processing 81/350 atomic regions from SNP 24057 to 24657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,608 DEBUG Processing 174/522 atomic regions from SNP 52073 to 52674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,646 DEBUG Processing 82/350 atomic regions from SNP 24357 to 24957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,805 DEBUG Processing 175/522 atomic regions from SNP 52374 to 52975 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,820 DEBUG Processing 83/350 atomic regions from SNP 24657 to 25257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,994 DEBUG Processing 84/350 atomic regions from SNP 24957 to 25557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,997 DEBUG Processing 176/522 atomic regions from SNP 52675 to 53276 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,169 DEBUG Processing 85/350 atomic regions from SNP 25257 to 25857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,200 DEBUG Processing 177/522 atomic regions from SNP 52976 to 53577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,345 DEBUG Processing 86/350 atomic regions from SNP 25557 to 26157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,392 DEBUG Processing 178/522 atomic regions from SNP 53277 to 53878 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,521 DEBUG Processing 87/350 atomic regions from SNP 25857 to 26457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,587 DEBUG Processing 179/522 atomic regions from SNP 53578 to 54179 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,691 DEBUG Processing 88/350 atomic regions from SNP 26157 to 26757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,782 DEBUG Processing 180/522 atomic regions from SNP 53879 to 54480 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,860 DEBUG Processing 89/350 atomic regions from SNP 26457 to 27057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,973 DEBUG Processing 181/522 atomic regions from SNP 54180 to 54781 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,031 DEBUG Processing 90/350 atomic regions from SNP 26757 to 27357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,159 DEBUG Processing 182/522 atomic regions from SNP 54481 to 55082 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,204 DEBUG Processing 91/350 atomic regions from SNP 27057 to 27657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,346 DEBUG Processing 183/522 atomic regions from SNP 54782 to 55383 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,394 DEBUG Processing 92/350 atomic regions from SNP 27357 to 27957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,537 DEBUG Processing 184/522 atomic regions from SNP 55083 to 55684 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,563 DEBUG Processing 93/350 atomic regions from SNP 27657 to 28257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,734 DEBUG Processing 94/350 atomic regions from SNP 27957 to 28557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,741 DEBUG Processing 185/522 atomic regions from SNP 55384 to 55985 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,911 DEBUG Processing 95/350 atomic regions from SNP 28257 to 28857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,960 DEBUG Processing 186/522 atomic regions from SNP 55685 to 56286 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,086 DEBUG Processing 96/350 atomic regions from SNP 28557 to 29157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,186 DEBUG Processing 187/522 atomic regions from SNP 55986 to 56587 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,266 DEBUG Processing 97/350 atomic regions from SNP 28857 to 29457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,427 DEBUG Processing 188/522 atomic regions from SNP 56287 to 56888 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,450 DEBUG Processing 98/350 atomic regions from SNP 29157 to 29757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,643 DEBUG Processing 99/350 atomic regions from SNP 29457 to 30057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,661 DEBUG Processing 189/522 atomic regions from SNP 56588 to 57189 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,830 DEBUG Processing 100/350 atomic regions from SNP 29757 to 30357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,890 DEBUG Processing 190/522 atomic regions from SNP 56889 to 57490 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,013 DEBUG Processing 101/350 atomic regions from SNP 30057 to 30657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,092 DEBUG Processing 191/522 atomic regions from SNP 57190 to 57791 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,192 DEBUG Processing 102/350 atomic regions from SNP 30357 to 30957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,283 DEBUG Processing 192/522 atomic regions from SNP 57491 to 58092 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,363 DEBUG Processing 103/350 atomic regions from SNP 30657 to 31257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,494 DEBUG Processing 193/522 atomic regions from SNP 57792 to 58393 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,530 DEBUG Processing 104/350 atomic regions from SNP 30957 to 31557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,699 DEBUG Processing 105/350 atomic regions from SNP 31257 to 31857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,707 DEBUG Processing 194/522 atomic regions from SNP 58093 to 58694 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,869 DEBUG Processing 106/350 atomic regions from SNP 31557 to 32157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,923 DEBUG Processing 195/522 atomic regions from SNP 58394 to 58995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,037 DEBUG Processing 107/350 atomic regions from SNP 31857 to 32457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,133 DEBUG Processing 196/522 atomic regions from SNP 58695 to 59296 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,204 DEBUG Processing 108/350 atomic regions from SNP 32157 to 32757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,336 DEBUG Processing 197/522 atomic regions from SNP 58996 to 59597 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,374 DEBUG Processing 109/350 atomic regions from SNP 32457 to 33057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,558 DEBUG Processing 110/350 atomic regions from SNP 32757 to 33357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,561 DEBUG Processing 198/522 atomic regions from SNP 59297 to 59898 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,743 DEBUG Processing 111/350 atomic regions from SNP 33057 to 33657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,787 DEBUG Processing 199/522 atomic regions from SNP 59598 to 60199 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,914 DEBUG Processing 112/350 atomic regions from SNP 33357 to 33957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,998 DEBUG Processing 200/522 atomic regions from SNP 59899 to 60500 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,087 DEBUG Processing 113/350 atomic regions from SNP 33657 to 34257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,220 DEBUG Processing 201/522 atomic regions from SNP 60200 to 60801 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,265 DEBUG Processing 114/350 atomic regions from SNP 33957 to 34557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,411 DEBUG Processing 202/522 atomic regions from SNP 60501 to 61102 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,442 DEBUG Processing 115/350 atomic regions from SNP 34257 to 34857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,613 DEBUG Processing 203/522 atomic regions from SNP 60802 to 61403 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,629 DEBUG Processing 116/350 atomic regions from SNP 34557 to 35157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,805 DEBUG Processing 117/350 atomic regions from SNP 34857 to 35457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,810 DEBUG Processing 204/522 atomic regions from SNP 61103 to 61704 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,991 DEBUG Processing 118/350 atomic regions from SNP 35157 to 35757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,999 DEBUG Processing 205/522 atomic regions from SNP 61404 to 62005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,189 DEBUG Processing 119/350 atomic regions from SNP 35457 to 36057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,194 DEBUG Processing 206/522 atomic regions from SNP 61705 to 62306 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,363 DEBUG Processing 120/350 atomic regions from SNP 35757 to 36357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,404 DEBUG Processing 207/522 atomic regions from SNP 62006 to 62607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,536 DEBUG Processing 121/350 atomic regions from SNP 36057 to 36657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,632 DEBUG Processing 208/522 atomic regions from SNP 62307 to 62908 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,701 DEBUG Processing 122/350 atomic regions from SNP 36357 to 36957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,842 DEBUG Processing 209/522 atomic regions from SNP 62608 to 63209 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,866 DEBUG Processing 123/350 atomic regions from SNP 36657 to 37257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,033 DEBUG Processing 124/350 atomic regions from SNP 36957 to 37557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,054 DEBUG Processing 210/522 atomic regions from SNP 62909 to 63510 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,209 DEBUG Processing 125/350 atomic regions from SNP 37257 to 37857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,256 DEBUG Processing 211/522 atomic regions from SNP 63210 to 63811 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,401 DEBUG Processing 126/350 atomic regions from SNP 37557 to 38157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,442 DEBUG Processing 212/522 atomic regions from SNP 63511 to 64112 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,596 DEBUG Processing 127/350 atomic regions from SNP 37857 to 38457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,627 DEBUG Processing 213/522 atomic regions from SNP 63812 to 64413 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,789 DEBUG Processing 128/350 atomic regions from SNP 38157 to 38757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,814 DEBUG Processing 214/522 atomic regions from SNP 64113 to 64714 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,967 DEBUG Processing 129/350 atomic regions from SNP 38457 to 39057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,006 DEBUG Processing 215/522 atomic regions from SNP 64414 to 65015 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,135 DEBUG Processing 130/350 atomic regions from SNP 38757 to 39357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,195 DEBUG Processing 216/522 atomic regions from SNP 64715 to 65316 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,306 DEBUG Processing 131/350 atomic regions from SNP 39057 to 39657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,410 DEBUG Processing 217/522 atomic regions from SNP 65016 to 65617 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,476 DEBUG Processing 132/350 atomic regions from SNP 39357 to 39957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,612 DEBUG Processing 218/522 atomic regions from SNP 65317 to 65918 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,639 DEBUG Processing 133/350 atomic regions from SNP 39657 to 40257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,800 DEBUG Processing 219/522 atomic regions from SNP 65618 to 66219 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,811 DEBUG Processing 134/350 atomic regions from SNP 39957 to 40557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,990 DEBUG Processing 135/350 atomic regions from SNP 40257 to 40857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,991 DEBUG Processing 220/522 atomic regions from SNP 65919 to 66520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,166 DEBUG Processing 136/350 atomic regions from SNP 40557 to 41157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,182 DEBUG Processing 221/522 atomic regions from SNP 66220 to 66821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,350 DEBUG Processing 137/350 atomic regions from SNP 40857 to 41457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,370 DEBUG Processing 222/522 atomic regions from SNP 66521 to 67122 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,529 DEBUG Processing 138/350 atomic regions from SNP 41157 to 41757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,562 DEBUG Processing 223/522 atomic regions from SNP 66822 to 67423 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,707 DEBUG Processing 139/350 atomic regions from SNP 41457 to 42057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,757 DEBUG Processing 224/522 atomic regions from SNP 67123 to 67724 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,886 DEBUG Processing 140/350 atomic regions from SNP 41757 to 42357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,955 DEBUG Processing 225/522 atomic regions from SNP 67424 to 68025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,067 DEBUG Processing 141/350 atomic regions from SNP 42057 to 42657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,160 DEBUG Processing 226/522 atomic regions from SNP 67725 to 68326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,249 DEBUG Processing 142/350 atomic regions from SNP 42357 to 42957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,358 DEBUG Processing 227/522 atomic regions from SNP 68026 to 68627 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,429 DEBUG Processing 143/350 atomic regions from SNP 42657 to 43257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,555 DEBUG Processing 228/522 atomic regions from SNP 68327 to 68928 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,611 DEBUG Processing 144/350 atomic regions from SNP 42957 to 43557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,758 DEBUG Processing 229/522 atomic regions from SNP 68628 to 69229 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,794 DEBUG Processing 145/350 atomic regions from SNP 43257 to 43857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,958 DEBUG Processing 230/522 atomic regions from SNP 68929 to 69530 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,988 DEBUG Processing 146/350 atomic regions from SNP 43557 to 44157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,170 DEBUG Processing 231/522 atomic regions from SNP 69230 to 69831 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,185 DEBUG Processing 147/350 atomic regions from SNP 43857 to 44457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,361 DEBUG Processing 148/350 atomic regions from SNP 44157 to 44757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,362 DEBUG Processing 232/522 atomic regions from SNP 69531 to 70132 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,534 DEBUG Processing 149/350 atomic regions from SNP 44457 to 45057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,554 DEBUG Processing 233/522 atomic regions from SNP 69832 to 70433 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,704 DEBUG Processing 150/350 atomic regions from SNP 44757 to 45357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,763 DEBUG Processing 234/522 atomic regions from SNP 70133 to 70734 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,875 DEBUG Processing 151/350 atomic regions from SNP 45057 to 45657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,950 DEBUG Processing 235/522 atomic regions from SNP 70434 to 71035 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,033 DEBUG Processing 152/350 atomic regions from SNP 45357 to 45957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,133 DEBUG Processing 236/522 atomic regions from SNP 70735 to 71336 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,197 DEBUG Processing 153/350 atomic regions from SNP 45657 to 46257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,316 DEBUG Processing 237/522 atomic regions from SNP 71036 to 71637 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,360 DEBUG Processing 154/350 atomic regions from SNP 45957 to 46557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,500 DEBUG Processing 238/522 atomic regions from SNP 71337 to 71938 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,546 DEBUG Processing 155/350 atomic regions from SNP 46257 to 46857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,686 DEBUG Processing 239/522 atomic regions from SNP 71638 to 72239 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,725 DEBUG Processing 156/350 atomic regions from SNP 46557 to 47157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,871 DEBUG Processing 240/522 atomic regions from SNP 71939 to 72540 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,903 DEBUG Processing 157/350 atomic regions from SNP 46857 to 47457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,058 DEBUG Processing 241/522 atomic regions from SNP 72240 to 72841 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,075 DEBUG Processing 158/350 atomic regions from SNP 47157 to 47757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,247 DEBUG Processing 242/522 atomic regions from SNP 72541 to 73142 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,251 DEBUG Processing 159/350 atomic regions from SNP 47457 to 48057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,423 DEBUG Processing 160/350 atomic regions from SNP 47757 to 48357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,436 DEBUG Processing 243/522 atomic regions from SNP 72842 to 73443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,607 DEBUG Processing 161/350 atomic regions from SNP 48057 to 48657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,643 DEBUG Processing 244/522 atomic regions from SNP 73143 to 73744 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,778 DEBUG Processing 162/350 atomic regions from SNP 48357 to 48957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,837 DEBUG Processing 245/522 atomic regions from SNP 73444 to 74045 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,952 DEBUG Processing 163/350 atomic regions from SNP 48657 to 49257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,033 DEBUG Processing 246/522 atomic regions from SNP 73745 to 74346 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,127 DEBUG Processing 164/350 atomic regions from SNP 48957 to 49557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,229 DEBUG Processing 247/522 atomic regions from SNP 74046 to 74647 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,300 DEBUG Processing 165/350 atomic regions from SNP 49257 to 49857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,424 DEBUG Processing 248/522 atomic regions from SNP 74347 to 74948 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,481 DEBUG Processing 166/350 atomic regions from SNP 49557 to 50157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,628 DEBUG Processing 249/522 atomic regions from SNP 74648 to 75249 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,670 DEBUG Processing 167/350 atomic regions from SNP 49857 to 50457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,832 DEBUG Processing 250/522 atomic regions from SNP 74949 to 75550 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,852 DEBUG Processing 168/350 atomic regions from SNP 50157 to 50757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,035 DEBUG Processing 251/522 atomic regions from SNP 75250 to 75851 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,039 DEBUG Processing 169/350 atomic regions from SNP 50457 to 51057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,222 DEBUG Processing 170/350 atomic regions from SNP 50757 to 51357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,240 DEBUG Processing 252/522 atomic regions from SNP 75551 to 76152 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,405 DEBUG Processing 171/350 atomic regions from SNP 51057 to 51657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,441 DEBUG Processing 253/522 atomic regions from SNP 75852 to 76453 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,582 DEBUG Processing 172/350 atomic regions from SNP 51357 to 51957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,644 DEBUG Processing 254/522 atomic regions from SNP 76153 to 76754 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,759 DEBUG Processing 173/350 atomic regions from SNP 51657 to 52257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,842 DEBUG Processing 255/522 atomic regions from SNP 76454 to 77055 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,934 DEBUG Processing 174/350 atomic regions from SNP 51957 to 52557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,049 DEBUG Processing 256/522 atomic regions from SNP 76755 to 77356 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,135 DEBUG Processing 175/350 atomic regions from SNP 52257 to 52857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,254 DEBUG Processing 257/522 atomic regions from SNP 77056 to 77657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,336 DEBUG Processing 176/350 atomic regions from SNP 52557 to 53157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,459 DEBUG Processing 258/522 atomic regions from SNP 77357 to 77958 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,530 DEBUG Processing 177/350 atomic regions from SNP 52857 to 53457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,678 DEBUG Processing 259/522 atomic regions from SNP 77658 to 78259 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,706 DEBUG Processing 178/350 atomic regions from SNP 53157 to 53757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,885 DEBUG Processing 179/350 atomic regions from SNP 53457 to 54057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,892 DEBUG Processing 260/522 atomic regions from SNP 77959 to 78560 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,066 DEBUG Processing 180/350 atomic regions from SNP 53757 to 54357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,092 DEBUG Processing 261/522 atomic regions from SNP 78260 to 78861 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,255 DEBUG Processing 181/350 atomic regions from SNP 54057 to 54657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,304 DEBUG Processing 262/522 atomic regions from SNP 78561 to 79162 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,431 DEBUG Processing 182/350 atomic regions from SNP 54357 to 54957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,523 DEBUG Processing 263/522 atomic regions from SNP 78862 to 79463 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,609 DEBUG Processing 183/350 atomic regions from SNP 54657 to 55257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,734 DEBUG Processing 264/522 atomic regions from SNP 79163 to 79764 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,783 DEBUG Processing 184/350 atomic regions from SNP 54957 to 55557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,939 DEBUG Processing 265/522 atomic regions from SNP 79464 to 80065 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,965 DEBUG Processing 185/350 atomic regions from SNP 55257 to 55857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,136 DEBUG Processing 266/522 atomic regions from SNP 79765 to 80366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,146 DEBUG Processing 186/350 atomic regions from SNP 55557 to 56157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,325 DEBUG Processing 187/350 atomic regions from SNP 55857 to 56457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,333 DEBUG Processing 267/522 atomic regions from SNP 80066 to 80667 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,506 DEBUG Processing 188/350 atomic regions from SNP 56157 to 56757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,532 DEBUG Processing 268/522 atomic regions from SNP 80367 to 80968 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,675 DEBUG Processing 189/350 atomic regions from SNP 56457 to 57057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,720 DEBUG Processing 269/522 atomic regions from SNP 80668 to 81269 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,850 DEBUG Processing 190/350 atomic regions from SNP 56757 to 57357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,907 DEBUG Processing 270/522 atomic regions from SNP 80969 to 81570 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,026 DEBUG Processing 191/350 atomic regions from SNP 57057 to 57657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,091 DEBUG Processing 271/522 atomic regions from SNP 81270 to 81871 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,202 DEBUG Processing 192/350 atomic regions from SNP 57357 to 57957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,281 DEBUG Processing 272/522 atomic regions from SNP 81571 to 82172 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,375 DEBUG Processing 193/350 atomic regions from SNP 57657 to 58257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,475 DEBUG Processing 273/522 atomic regions from SNP 81872 to 82473 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,555 DEBUG Processing 194/350 atomic regions from SNP 57957 to 58557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,676 DEBUG Processing 274/522 atomic regions from SNP 82173 to 82774 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,740 DEBUG Processing 195/350 atomic regions from SNP 58257 to 58857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,865 DEBUG Processing 275/522 atomic regions from SNP 82474 to 83075 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,912 DEBUG Processing 196/350 atomic regions from SNP 58557 to 59157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,057 DEBUG Processing 276/522 atomic regions from SNP 82775 to 83376 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,084 DEBUG Processing 197/350 atomic regions from SNP 58857 to 59457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,247 DEBUG Processing 277/522 atomic regions from SNP 83076 to 83677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,257 DEBUG Processing 198/350 atomic regions from SNP 59157 to 59757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,429 DEBUG Processing 199/350 atomic regions from SNP 59457 to 60057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,452 DEBUG Processing 278/522 atomic regions from SNP 83377 to 83978 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,601 DEBUG Processing 200/350 atomic regions from SNP 59757 to 60357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,658 DEBUG Processing 279/522 atomic regions from SNP 83678 to 84279 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,773 DEBUG Processing 201/350 atomic regions from SNP 60057 to 60657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,846 DEBUG Processing 280/522 atomic regions from SNP 83979 to 84580 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,960 DEBUG Processing 202/350 atomic regions from SNP 60357 to 60957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,038 DEBUG Processing 281/522 atomic regions from SNP 84280 to 84881 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,132 DEBUG Processing 203/350 atomic regions from SNP 60657 to 61257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,224 DEBUG Processing 282/522 atomic regions from SNP 84581 to 85182 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,325 DEBUG Processing 204/350 atomic regions from SNP 60957 to 61557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,417 DEBUG Processing 283/522 atomic regions from SNP 84882 to 85483 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,517 DEBUG Processing 205/350 atomic regions from SNP 61257 to 61857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,606 DEBUG Processing 284/522 atomic regions from SNP 85183 to 85784 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,692 DEBUG Processing 206/350 atomic regions from SNP 61557 to 62157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,805 DEBUG Processing 285/522 atomic regions from SNP 85484 to 86085 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,869 DEBUG Processing 207/350 atomic regions from SNP 61857 to 62457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,001 DEBUG Processing 286/522 atomic regions from SNP 85785 to 86386 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,043 DEBUG Processing 208/350 atomic regions from SNP 62157 to 62757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,200 DEBUG Processing 287/522 atomic regions from SNP 86086 to 86687 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,223 DEBUG Processing 209/350 atomic regions from SNP 62457 to 63057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,395 DEBUG Processing 288/522 atomic regions from SNP 86387 to 86988 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,408 DEBUG Processing 210/350 atomic regions from SNP 62757 to 63357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,589 DEBUG Processing 211/350 atomic regions from SNP 63057 to 63657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,595 DEBUG Processing 289/522 atomic regions from SNP 86688 to 87289 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,776 DEBUG Processing 212/350 atomic regions from SNP 63357 to 63957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,796 DEBUG Processing 290/522 atomic regions from SNP 86989 to 87590 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,955 DEBUG Processing 213/350 atomic regions from SNP 63657 to 64257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,991 DEBUG Processing 291/522 atomic regions from SNP 87290 to 87890 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,136 DEBUG Processing 214/350 atomic regions from SNP 63957 to 64557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,189 DEBUG Processing 292/522 atomic regions from SNP 87590 to 88190 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,320 DEBUG Processing 215/350 atomic regions from SNP 64257 to 64857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,398 DEBUG Processing 293/522 atomic regions from SNP 87890 to 88490 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,497 DEBUG Processing 216/350 atomic regions from SNP 64557 to 65157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,610 DEBUG Processing 294/522 atomic regions from SNP 88190 to 88790 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,674 DEBUG Processing 217/350 atomic regions from SNP 64857 to 65457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,807 DEBUG Processing 295/522 atomic regions from SNP 88490 to 89090 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,854 DEBUG Processing 218/350 atomic regions from SNP 65157 to 65757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,004 DEBUG Processing 296/522 atomic regions from SNP 88790 to 89390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,034 DEBUG Processing 219/350 atomic regions from SNP 65457 to 66057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,202 DEBUG Processing 297/522 atomic regions from SNP 89090 to 89690 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,222 DEBUG Processing 220/350 atomic regions from SNP 65757 to 66357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,397 DEBUG Processing 298/522 atomic regions from SNP 89390 to 89990 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,401 DEBUG Processing 221/350 atomic regions from SNP 66057 to 66657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,577 DEBUG Processing 222/350 atomic regions from SNP 66357 to 66957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,587 DEBUG Processing 299/522 atomic regions from SNP 89690 to 90290 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,762 DEBUG Processing 223/350 atomic regions from SNP 66657 to 67257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,778 DEBUG Processing 300/522 atomic regions from SNP 89990 to 90590 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,950 DEBUG Processing 224/350 atomic regions from SNP 66957 to 67557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,967 DEBUG Processing 301/522 atomic regions from SNP 90290 to 90890 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,133 DEBUG Processing 225/350 atomic regions from SNP 67257 to 67857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,160 DEBUG Processing 302/522 atomic regions from SNP 90590 to 91190 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,310 DEBUG Processing 226/350 atomic regions from SNP 67557 to 68157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,351 DEBUG Processing 303/522 atomic regions from SNP 90890 to 91490 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,486 DEBUG Processing 227/350 atomic regions from SNP 67857 to 68457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,547 DEBUG Processing 304/522 atomic regions from SNP 91190 to 91790 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,655 DEBUG Processing 228/350 atomic regions from SNP 68157 to 68757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,737 DEBUG Processing 305/522 atomic regions from SNP 91490 to 92090 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,824 DEBUG Processing 229/350 atomic regions from SNP 68457 to 69057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,933 DEBUG Processing 306/522 atomic regions from SNP 91790 to 92390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,007 DEBUG Processing 230/350 atomic regions from SNP 68757 to 69357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,124 DEBUG Processing 307/522 atomic regions from SNP 92090 to 92690 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,204 DEBUG Processing 231/350 atomic regions from SNP 69057 to 69657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,316 DEBUG Processing 308/522 atomic regions from SNP 92390 to 92990 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,407 DEBUG Processing 232/350 atomic regions from SNP 69357 to 69957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,502 DEBUG Processing 309/522 atomic regions from SNP 92690 to 93290 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,605 DEBUG Processing 233/350 atomic regions from SNP 69657 to 70257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,690 DEBUG Processing 310/522 atomic regions from SNP 92990 to 93590 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,792 DEBUG Processing 234/350 atomic regions from SNP 69957 to 70557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,881 DEBUG Processing 311/522 atomic regions from SNP 93290 to 93890 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,963 DEBUG Processing 235/350 atomic regions from SNP 70257 to 70857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,068 DEBUG Processing 312/522 atomic regions from SNP 93590 to 94190 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,143 DEBUG Processing 236/350 atomic regions from SNP 70557 to 71157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,256 DEBUG Processing 313/522 atomic regions from SNP 93890 to 94490 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,327 DEBUG Processing 237/350 atomic regions from SNP 70857 to 71457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,442 DEBUG Processing 314/522 atomic regions from SNP 94190 to 94790 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,502 DEBUG Processing 238/350 atomic regions from SNP 71157 to 71757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,630 DEBUG Processing 315/522 atomic regions from SNP 94490 to 95090 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,680 DEBUG Processing 239/350 atomic regions from SNP 71457 to 72057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,818 DEBUG Processing 316/522 atomic regions from SNP 94790 to 95390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,854 DEBUG Processing 240/350 atomic regions from SNP 71757 to 72357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,028 DEBUG Processing 317/522 atomic regions from SNP 95090 to 95690 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,031 DEBUG Processing 241/350 atomic regions from SNP 72057 to 72657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,217 DEBUG Processing 318/522 atomic regions from SNP 95390 to 95990 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,225 DEBUG Processing 242/350 atomic regions from SNP 72357 to 72957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,433 DEBUG Processing 243/350 atomic regions from SNP 72657 to 73257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,438 DEBUG Processing 319/522 atomic regions from SNP 95690 to 96290 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,617 DEBUG Processing 244/350 atomic regions from SNP 72957 to 73557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,657 DEBUG Processing 320/522 atomic regions from SNP 95990 to 96590 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,797 DEBUG Processing 245/350 atomic regions from SNP 73257 to 73857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,863 DEBUG Processing 321/522 atomic regions from SNP 96290 to 96890 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,998 DEBUG Processing 246/350 atomic regions from SNP 73557 to 74157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,065 DEBUG Processing 322/522 atomic regions from SNP 96590 to 97190 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,212 DEBUG Processing 247/350 atomic regions from SNP 73857 to 74457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,258 DEBUG Processing 323/522 atomic regions from SNP 96890 to 97490 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,427 DEBUG Processing 248/350 atomic regions from SNP 74157 to 74757 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,454 DEBUG Processing 324/522 atomic regions from SNP 97190 to 97790 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,626 DEBUG Processing 249/350 atomic regions from SNP 74457 to 75057 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,648 DEBUG Processing 325/522 atomic regions from SNP 97490 to 98090 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,821 DEBUG Processing 250/350 atomic regions from SNP 74757 to 75357 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,847 DEBUG Processing 326/522 atomic regions from SNP 97790 to 98390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,024 DEBUG Processing 251/350 atomic regions from SNP 75057 to 75657 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,046 DEBUG Processing 327/522 atomic regions from SNP 98090 to 98690 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,236 DEBUG Processing 252/350 atomic regions from SNP 75357 to 75957 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,241 DEBUG Processing 328/522 atomic regions from SNP 98390 to 98990 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,423 DEBUG Processing 253/350 atomic regions from SNP 75657 to 76257 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,432 DEBUG Processing 329/522 atomic regions from SNP 98690 to 99290 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,607 DEBUG Processing 254/350 atomic regions from SNP 75957 to 76557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,624 DEBUG Processing 330/522 atomic regions from SNP 98990 to 99590 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,804 DEBUG Processing 255/350 atomic regions from SNP 76257 to 76857 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,808 DEBUG Processing 331/522 atomic regions from SNP 99290 to 99890 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,995 DEBUG Processing 256/350 atomic regions from SNP 76557 to 77157 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,995 DEBUG Processing 332/522 atomic regions from SNP 99590 to 100190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,177 DEBUG Processing 257/350 atomic regions from SNP 76857 to 77457 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:00,186 DEBUG Processing 333/522 atomic regions from SNP 99890 to 100490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,371 DEBUG Processing 258/350 atomic regions from SNP 77157 to 77757 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:00,373 DEBUG Processing 334/522 atomic regions from SNP 100190 to 100790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,557 DEBUG Processing 259/350 atomic regions from SNP 77457 to 78057 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:00,560 DEBUG Processing 335/522 atomic regions from SNP 100490 to 101090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,749 DEBUG Processing 336/522 atomic regions from SNP 100790 to 101390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,761 DEBUG Processing 260/350 atomic regions from SNP 77757 to 78357 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:00,938 DEBUG Processing 337/522 atomic regions from SNP 101090 to 101690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,959 DEBUG Processing 261/350 atomic regions from SNP 78057 to 78657 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,125 DEBUG Processing 338/522 atomic regions from SNP 101390 to 101990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,160 DEBUG Processing 262/350 atomic regions from SNP 78357 to 78957 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,315 DEBUG Processing 339/522 atomic regions from SNP 101690 to 102290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,354 DEBUG Processing 263/350 atomic regions from SNP 78657 to 79257 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,500 DEBUG Processing 340/522 atomic regions from SNP 101990 to 102590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,557 DEBUG Processing 264/350 atomic regions from SNP 78957 to 79557 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,686 DEBUG Processing 341/522 atomic regions from SNP 102290 to 102890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,756 DEBUG Processing 265/350 atomic regions from SNP 79257 to 79857 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,889 DEBUG Processing 342/522 atomic regions from SNP 102590 to 103190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,954 DEBUG Processing 266/350 atomic regions from SNP 79557 to 80157 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,118 DEBUG Processing 343/522 atomic regions from SNP 102890 to 103490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,161 DEBUG Processing 267/350 atomic regions from SNP 79857 to 80457 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,342 DEBUG Processing 344/522 atomic regions from SNP 103190 to 103790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,344 DEBUG Processing 268/350 atomic regions from SNP 80157 to 80757 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,526 DEBUG Processing 269/350 atomic regions from SNP 80457 to 81057 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,561 DEBUG Processing 345/522 atomic regions from SNP 103490 to 104090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,713 DEBUG Processing 270/350 atomic regions from SNP 80757 to 81357 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,792 DEBUG Processing 346/522 atomic regions from SNP 103790 to 104390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,905 DEBUG Processing 271/350 atomic regions from SNP 81057 to 81657 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,031 DEBUG Processing 347/522 atomic regions from SNP 104090 to 104690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,092 DEBUG Processing 272/350 atomic regions from SNP 81357 to 81957 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,245 DEBUG Processing 348/522 atomic regions from SNP 104390 to 104990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,264 DEBUG Processing 273/350 atomic regions from SNP 81657 to 82257 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,444 DEBUG Processing 274/350 atomic regions from SNP 81957 to 82557 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,472 DEBUG Processing 349/522 atomic regions from SNP 104690 to 105290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,626 DEBUG Processing 275/350 atomic regions from SNP 82257 to 82857 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,693 DEBUG Processing 350/522 atomic regions from SNP 104990 to 105590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,804 DEBUG Processing 276/350 atomic regions from SNP 82557 to 83157 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,907 DEBUG Processing 351/522 atomic regions from SNP 105290 to 105890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,977 DEBUG Processing 277/350 atomic regions from SNP 82857 to 83457 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:04,094 DEBUG Processing 352/522 atomic regions from SNP 105590 to 106190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,145 DEBUG Processing 278/350 atomic regions from SNP 83157 to 83757 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:04,281 DEBUG Processing 353/522 atomic regions from SNP 105890 to 106490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,330 DEBUG Processing 279/350 atomic regions from SNP 83457 to 84057 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:04,464 DEBUG Processing 354/522 atomic regions from SNP 106190 to 106790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,497 DEBUG Processing 280/350 atomic regions from SNP 83757 to 84357 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:04,651 DEBUG Processing 355/522 atomic regions from SNP 106490 to 107090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,663 DEBUG Processing 281/350 atomic regions from SNP 84057 to 84657 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:04,835 DEBUG Processing 356/522 atomic regions from SNP 106790 to 107390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,842 DEBUG Processing 282/350 atomic regions from SNP 84357 to 84957 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:05,008 DEBUG Processing 283/350 atomic regions from SNP 84657 to 85257 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:05,020 DEBUG Processing 357/522 atomic regions from SNP 107090 to 107690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,184 DEBUG Processing 284/350 atomic regions from SNP 84957 to 85557 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:05,209 DEBUG Processing 358/522 atomic regions from SNP 107390 to 107990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,355 DEBUG Processing 285/350 atomic regions from SNP 85257 to 85857 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:05,398 DEBUG Processing 359/522 atomic regions from SNP 107690 to 108290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,536 DEBUG Processing 286/350 atomic regions from SNP 85557 to 86157 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:05,588 DEBUG Processing 360/522 atomic regions from SNP 107990 to 108590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,703 DEBUG Processing 287/350 atomic regions from SNP 85857 to 86457 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:05,776 DEBUG Processing 361/522 atomic regions from SNP 108290 to 108890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,863 DEBUG Processing 288/350 atomic regions from SNP 86157 to 86757 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:05,973 DEBUG Processing 362/522 atomic regions from SNP 108590 to 109190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,022 DEBUG Processing 289/350 atomic regions from SNP 86457 to 87057 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:06,170 DEBUG Processing 363/522 atomic regions from SNP 108890 to 109490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,179 DEBUG Processing 290/350 atomic regions from SNP 86757 to 87357 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:06,342 DEBUG Processing 291/350 atomic regions from SNP 87057 to 87657 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:06,353 DEBUG Processing 364/522 atomic regions from SNP 109190 to 109790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,505 DEBUG Processing 292/350 atomic regions from SNP 87357 to 87957 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:06,533 DEBUG Processing 365/522 atomic regions from SNP 109490 to 110090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,675 DEBUG Processing 293/350 atomic regions from SNP 87657 to 88257 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:06,731 DEBUG Processing 366/522 atomic regions from SNP 109790 to 110390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,836 DEBUG Processing 294/350 atomic regions from SNP 87957 to 88557 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:06,931 DEBUG Processing 367/522 atomic regions from SNP 110090 to 110690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,011 DEBUG Processing 295/350 atomic regions from SNP 88257 to 88857 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:07,150 DEBUG Processing 368/522 atomic regions from SNP 110390 to 110990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,178 DEBUG Processing 296/350 atomic regions from SNP 88557 to 89157 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:07,330 DEBUG Processing 369/522 atomic regions from SNP 110690 to 111290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,344 DEBUG Processing 297/350 atomic regions from SNP 88857 to 89457 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:07,521 DEBUG Processing 298/350 atomic regions from SNP 89157 to 89757 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:07,524 DEBUG Processing 370/522 atomic regions from SNP 110990 to 111590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,690 DEBUG Processing 299/350 atomic regions from SNP 89457 to 90057 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:07,710 DEBUG Processing 371/522 atomic regions from SNP 111290 to 111890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,852 DEBUG Processing 300/350 atomic regions from SNP 89757 to 90357 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:07,889 DEBUG Processing 372/522 atomic regions from SNP 111590 to 112190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,040 DEBUG Processing 301/350 atomic regions from SNP 90057 to 90657 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:08,081 DEBUG Processing 373/522 atomic regions from SNP 111890 to 112490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,248 DEBUG Processing 302/350 atomic regions from SNP 90357 to 90957 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:08,277 DEBUG Processing 374/522 atomic regions from SNP 112190 to 112790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,417 DEBUG Processing 303/350 atomic regions from SNP 90657 to 91257 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:08,456 DEBUG Processing 375/522 atomic regions from SNP 112490 to 113090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,583 DEBUG Processing 304/350 atomic regions from SNP 90957 to 91557 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:08,632 DEBUG Processing 376/522 atomic regions from SNP 112790 to 113390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,789 DEBUG Processing 305/350 atomic regions from SNP 91257 to 91857 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:08,827 DEBUG Processing 377/522 atomic regions from SNP 113090 to 113690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,997 DEBUG Processing 306/350 atomic regions from SNP 91557 to 92157 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:09,032 DEBUG Processing 378/522 atomic regions from SNP 113390 to 113990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,195 DEBUG Processing 307/350 atomic regions from SNP 91857 to 92457 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:09,229 DEBUG Processing 379/522 atomic regions from SNP 113690 to 114290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,387 DEBUG Processing 308/350 atomic regions from SNP 92157 to 92757 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:09,424 DEBUG Processing 380/522 atomic regions from SNP 113990 to 114590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,567 DEBUG Processing 309/350 atomic regions from SNP 92457 to 93057 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:09,613 DEBUG Processing 381/522 atomic regions from SNP 114290 to 114890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,753 DEBUG Processing 310/350 atomic regions from SNP 92757 to 93357 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:09,812 DEBUG Processing 382/522 atomic regions from SNP 114590 to 115190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,917 DEBUG Processing 311/350 atomic regions from SNP 93057 to 93657 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:10,015 DEBUG Processing 383/522 atomic regions from SNP 114890 to 115490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,098 DEBUG Processing 312/350 atomic regions from SNP 93357 to 93957 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:10,196 DEBUG Processing 384/522 atomic regions from SNP 115190 to 115790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,272 DEBUG Processing 313/350 atomic regions from SNP 93657 to 94257 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:10,403 DEBUG Processing 385/522 atomic regions from SNP 115490 to 116090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,477 DEBUG Processing 314/350 atomic regions from SNP 93957 to 94557 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:10,614 DEBUG Processing 386/522 atomic regions from SNP 115790 to 116390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,641 DEBUG Processing 315/350 atomic regions from SNP 94257 to 94857 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:10,801 DEBUG Processing 316/350 atomic regions from SNP 94557 to 95157 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:10,818 DEBUG Processing 387/522 atomic regions from SNP 116090 to 116690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,968 DEBUG Processing 317/350 atomic regions from SNP 94857 to 95457 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:11,027 DEBUG Processing 388/522 atomic regions from SNP 116390 to 116990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,130 DEBUG Processing 318/350 atomic regions from SNP 95157 to 95757 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:11,213 DEBUG Processing 389/522 atomic regions from SNP 116690 to 117290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,288 DEBUG Processing 319/350 atomic regions from SNP 95457 to 96057 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:11,392 DEBUG Processing 390/522 atomic regions from SNP 116990 to 117590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,449 DEBUG Processing 320/350 atomic regions from SNP 95757 to 96357 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:11,592 DEBUG Processing 391/522 atomic regions from SNP 117290 to 117890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,630 DEBUG Processing 321/350 atomic regions from SNP 96057 to 96657 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:11,776 DEBUG Processing 392/522 atomic regions from SNP 117590 to 118190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,805 DEBUG Processing 322/350 atomic regions from SNP 96357 to 96957 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:11,953 DEBUG Processing 393/522 atomic regions from SNP 117890 to 118490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,975 DEBUG Processing 323/350 atomic regions from SNP 96657 to 97257 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:12,129 DEBUG Processing 394/522 atomic regions from SNP 118190 to 118790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,149 DEBUG Processing 324/350 atomic regions from SNP 96957 to 97557 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:12,305 DEBUG Processing 395/522 atomic regions from SNP 118490 to 119090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,311 DEBUG Processing 325/350 atomic regions from SNP 97257 to 97857 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:12,472 DEBUG Processing 326/350 atomic regions from SNP 97557 to 98157 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:12,482 DEBUG Processing 396/522 atomic regions from SNP 118790 to 119390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,631 DEBUG Processing 327/350 atomic regions from SNP 97857 to 98457 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:12,663 DEBUG Processing 397/522 atomic regions from SNP 119090 to 119690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,795 DEBUG Processing 328/350 atomic regions from SNP 98157 to 98757 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:12,838 DEBUG Processing 398/522 atomic regions from SNP 119390 to 119990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,954 DEBUG Processing 329/350 atomic regions from SNP 98457 to 99057 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:13,016 DEBUG Processing 399/522 atomic regions from SNP 119690 to 120290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,115 DEBUG Processing 330/350 atomic regions from SNP 98757 to 99357 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:13,190 DEBUG Processing 400/522 atomic regions from SNP 119990 to 120590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,271 DEBUG Processing 331/350 atomic regions from SNP 99057 to 99657 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:13,367 DEBUG Processing 401/522 atomic regions from SNP 120290 to 120890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,441 DEBUG Processing 332/350 atomic regions from SNP 99357 to 99957 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:13,542 DEBUG Processing 402/522 atomic regions from SNP 120590 to 121190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,599 DEBUG Processing 333/350 atomic regions from SNP 99657 to 100257 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:13,717 DEBUG Processing 403/522 atomic regions from SNP 120890 to 121490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,757 DEBUG Processing 334/350 atomic regions from SNP 99957 to 100557 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:13,891 DEBUG Processing 404/522 atomic regions from SNP 121190 to 121790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,914 DEBUG Processing 335/350 atomic regions from SNP 100257 to 100857 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:14,069 DEBUG Processing 336/350 atomic regions from SNP 100557 to 101157 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:14,088 DEBUG Processing 405/522 atomic regions from SNP 121490 to 122090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,225 DEBUG Processing 337/350 atomic regions from SNP 100857 to 101457 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:14,277 DEBUG Processing 406/522 atomic regions from SNP 121790 to 122390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,389 DEBUG Processing 338/350 atomic regions from SNP 101157 to 101757 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:14,450 DEBUG Processing 407/522 atomic regions from SNP 122090 to 122690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,545 DEBUG Processing 339/350 atomic regions from SNP 101457 to 102057 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:14,629 DEBUG Processing 408/522 atomic regions from SNP 122390 to 122990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,704 DEBUG Processing 340/350 atomic regions from SNP 101757 to 102357 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:14,802 DEBUG Processing 409/522 atomic regions from SNP 122690 to 123290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,859 DEBUG Processing 341/350 atomic regions from SNP 102057 to 102657 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:14,977 DEBUG Processing 410/522 atomic regions from SNP 122990 to 123590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,016 DEBUG Processing 342/350 atomic regions from SNP 102357 to 102957 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:15,152 DEBUG Processing 411/522 atomic regions from SNP 123290 to 123890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,175 DEBUG Processing 343/350 atomic regions from SNP 102657 to 103257 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:15,329 DEBUG Processing 412/522 atomic regions from SNP 123590 to 124190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,333 DEBUG Processing 344/350 atomic regions from SNP 102957 to 103557 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:15,493 DEBUG Processing 345/350 atomic regions from SNP 103257 to 103857 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:15,507 DEBUG Processing 413/522 atomic regions from SNP 123890 to 124490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,654 DEBUG Processing 346/350 atomic regions from SNP 103557 to 104157 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:15,683 DEBUG Processing 414/522 atomic regions from SNP 124190 to 124790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,814 DEBUG Processing 347/350 atomic regions from SNP 103857 to 104457 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:15,857 DEBUG Processing 415/522 atomic regions from SNP 124490 to 125090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,980 DEBUG Processing 348/350 atomic regions from SNP 104157 to 104757 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:16,032 DEBUG Processing 416/522 atomic regions from SNP 124790 to 125390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,161 DEBUG Processing 349/350 atomic regions from SNP 104457 to 105057 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:16,221 DEBUG Processing 417/522 atomic regions from SNP 125090 to 125690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,318 DEBUG Processing 350/350 atomic regions from SNP 104757 to 105357 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:16,396 DEBUG Processing 418/522 atomic regions from SNP 125390 to 125990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,429 DEBUG Unique SNPs positions in subchromosome 1: 105358 2025-01-31 10:00:16,571 DEBUG Processing 419/522 atomic regions from SNP 125690 to 126290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,743 DEBUG Processing 420/522 atomic regions from SNP 125990 to 126590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,915 DEBUG Processing 421/522 atomic regions from SNP 126290 to 126890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,090 DEBUG Processing 422/522 atomic regions from SNP 126590 to 127190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,272 DEBUG Processing 423/522 atomic regions from SNP 126890 to 127490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,472 DEBUG Processing 424/522 atomic regions from SNP 127190 to 127790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,671 DEBUG Processing 425/522 atomic regions from SNP 127490 to 128090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,848 DEBUG Processing 426/522 atomic regions from SNP 127790 to 128390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,043 DEBUG Processing 427/522 atomic regions from SNP 128090 to 128690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,221 DEBUG Processing 428/522 atomic regions from SNP 128390 to 128990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,284 DEBUG Subchromosome time: 78.86642155901063, subchromosome SNPs: 105358 2025-01-31 10:00:18,285 DEBUG Estimated BADs: [0.72, 8.64, 2.16, 12.96, 4.32, 1.08, 2.16, 0.43, 2.16, 0.72, 2.16, 0.72, 2.16, 4.32, 2.16, 0.54, 2.16] SNP counts: [207, 7833, 1868, 803, 2926, 7820, 6292, 2704, 9602, 3000, 11109, 3889, 10807, 10199, 3294, 5086, 17919] SNP IDs counts: [207, 7833, 1868, 803, 2926, 7820, 6292, 2704, 9602, 3000, 11109, 3889, 10807, 10199, 3294, 5086, 17919] Critical gap: 411762bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 3.26Mbp, 7.50Mbp, 8.71Mbp, 9.14Mbp, 11.00Mbp, 15.50Mbp, 18.92Mbp, 20.44Mbp, 25.63Mbp, 27.30Mbp, 33.27Mbp, 35.58Mbp, 41.64Mbp, 47.04Mbp, 48.81Mbp, 51.71Mbp, 61.43Mbp] 2025-01-31 10:00:18,285 DEBUG chr19 time: 78.86690685898066 s 2025-01-31 10:00:18,344 DEBUG chr19: Fitting background model for 17 segments 2025-01-31 10:00:18,400 DEBUG Processing 429/522 atomic regions from SNP 128690 to 129290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,590 DEBUG Processing 430/522 atomic regions from SNP 128990 to 129590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,779 DEBUG Processing 431/522 atomic regions from SNP 129290 to 129890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,985 DEBUG Processing 432/522 atomic regions from SNP 129590 to 130190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,167 DEBUG Processing 433/522 atomic regions from SNP 129890 to 130490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,367 DEBUG Processing 434/522 atomic regions from SNP 130190 to 130790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,568 DEBUG Processing 435/522 atomic regions from SNP 130490 to 131090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,755 DEBUG Processing 436/522 atomic regions from SNP 130790 to 131390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,933 DEBUG Processing 437/522 atomic regions from SNP 131090 to 131690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,113 DEBUG Processing 438/522 atomic regions from SNP 131390 to 131990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,296 DEBUG Processing 439/522 atomic regions from SNP 131690 to 132290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,483 DEBUG Processing 440/522 atomic regions from SNP 131990 to 132590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,664 DEBUG Processing 441/522 atomic regions from SNP 132290 to 132890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,842 DEBUG Processing 442/522 atomic regions from SNP 132590 to 133190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,021 DEBUG Processing 443/522 atomic regions from SNP 132890 to 133490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,220 DEBUG Processing 444/522 atomic regions from SNP 133190 to 133790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,417 DEBUG Processing 445/522 atomic regions from SNP 133490 to 134090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,595 DEBUG Processing 446/522 atomic regions from SNP 133790 to 134390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,774 DEBUG Processing 447/522 atomic regions from SNP 134090 to 134690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,969 DEBUG Processing 448/522 atomic regions from SNP 134390 to 134990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,184 DEBUG Processing 449/522 atomic regions from SNP 134690 to 135290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,378 DEBUG Processing 450/522 atomic regions from SNP 134990 to 135590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,585 DEBUG Processing 451/522 atomic regions from SNP 135290 to 135890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,775 DEBUG Processing 452/522 atomic regions from SNP 135590 to 136190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,958 DEBUG Processing 453/522 atomic regions from SNP 135890 to 136490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,140 DEBUG Processing 454/522 atomic regions from SNP 136190 to 136790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,318 DEBUG Processing 455/522 atomic regions from SNP 136490 to 137090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,497 DEBUG Processing 456/522 atomic regions from SNP 136790 to 137390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,676 DEBUG Processing 457/522 atomic regions from SNP 137090 to 137690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,856 DEBUG Processing 458/522 atomic regions from SNP 137390 to 137990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,033 DEBUG Processing 459/522 atomic regions from SNP 137690 to 138290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,214 DEBUG Processing 460/522 atomic regions from SNP 137990 to 138590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,403 DEBUG Processing 461/522 atomic regions from SNP 138290 to 138890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,575 DEBUG Processing 462/522 atomic regions from SNP 138590 to 139190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,776 DEBUG Processing 463/522 atomic regions from SNP 138890 to 139490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,979 DEBUG Processing 464/522 atomic regions from SNP 139190 to 139790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,166 DEBUG Processing 465/522 atomic regions from SNP 139490 to 140090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,342 DEBUG Processing 466/522 atomic regions from SNP 139790 to 140390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,517 DEBUG Processing 467/522 atomic regions from SNP 140090 to 140690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,686 DEBUG Processing 468/522 atomic regions from SNP 140390 to 140990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,858 DEBUG Processing 469/522 atomic regions from SNP 140690 to 141290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,032 DEBUG Processing 470/522 atomic regions from SNP 140990 to 141590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,204 DEBUG Processing 471/522 atomic regions from SNP 141290 to 141890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,379 DEBUG Processing 472/522 atomic regions from SNP 141590 to 142190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,553 DEBUG Processing 473/522 atomic regions from SNP 141890 to 142490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,727 DEBUG Processing 474/522 atomic regions from SNP 142190 to 142790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,901 DEBUG Processing 475/522 atomic regions from SNP 142490 to 143090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,075 DEBUG Processing 476/522 atomic regions from SNP 142790 to 143390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,248 DEBUG Processing 477/522 atomic regions from SNP 143090 to 143690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,435 DEBUG Processing 478/522 atomic regions from SNP 143390 to 143990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,631 DEBUG Processing 479/522 atomic regions from SNP 143690 to 144290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,807 DEBUG Processing 480/522 atomic regions from SNP 143990 to 144590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,980 DEBUG Processing 481/522 atomic regions from SNP 144290 to 144890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,158 DEBUG Processing 482/522 atomic regions from SNP 144590 to 145190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,329 DEBUG Processing 483/522 atomic regions from SNP 144890 to 145490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,500 DEBUG Processing 484/522 atomic regions from SNP 145190 to 145790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,673 DEBUG Processing 485/522 atomic regions from SNP 145490 to 146090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,850 DEBUG Processing 486/522 atomic regions from SNP 145790 to 146390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,024 DEBUG Processing 487/522 atomic regions from SNP 146090 to 146690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,198 DEBUG Processing 488/522 atomic regions from SNP 146390 to 146990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,369 DEBUG Processing 489/522 atomic regions from SNP 146690 to 147290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,546 DEBUG Processing 490/522 atomic regions from SNP 146990 to 147590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,731 DEBUG Processing 491/522 atomic regions from SNP 147290 to 147890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,922 DEBUG Processing 492/522 atomic regions from SNP 147590 to 148190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,121 DEBUG Processing 493/522 atomic regions from SNP 147890 to 148490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,297 DEBUG Processing 494/522 atomic regions from SNP 148190 to 148790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,472 DEBUG Processing 495/522 atomic regions from SNP 148490 to 149090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,647 DEBUG Processing 496/522 atomic regions from SNP 148790 to 149390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,822 DEBUG Processing 497/522 atomic regions from SNP 149090 to 149690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,996 DEBUG Processing 498/522 atomic regions from SNP 149390 to 149990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,169 DEBUG Processing 499/522 atomic regions from SNP 149690 to 150290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,343 DEBUG Processing 500/522 atomic regions from SNP 149990 to 150590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,518 DEBUG Processing 501/522 atomic regions from SNP 150290 to 150890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,693 DEBUG Processing 502/522 atomic regions from SNP 150590 to 151190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,872 DEBUG Processing 503/522 atomic regions from SNP 150890 to 151490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,048 DEBUG Processing 504/522 atomic regions from SNP 151190 to 151790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,224 DEBUG Processing 505/522 atomic regions from SNP 151490 to 152090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,399 DEBUG Processing 506/522 atomic regions from SNP 151790 to 152390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,571 DEBUG Processing 507/522 atomic regions from SNP 152090 to 152690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,745 DEBUG Processing 508/522 atomic regions from SNP 152390 to 152990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,931 DEBUG Processing 509/522 atomic regions from SNP 152690 to 153290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,109 DEBUG Processing 510/522 atomic regions from SNP 152990 to 153590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,286 DEBUG Processing 511/522 atomic regions from SNP 153290 to 153890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,469 DEBUG Processing 512/522 atomic regions from SNP 153590 to 154190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,642 DEBUG Processing 513/522 atomic regions from SNP 153890 to 154490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,816 DEBUG Processing 514/522 atomic regions from SNP 154190 to 154790 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,990 DEBUG Processing 515/522 atomic regions from SNP 154490 to 155090 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,176 DEBUG Processing 516/522 atomic regions from SNP 154790 to 155390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,350 DEBUG Processing 517/522 atomic regions from SNP 155090 to 155690 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,524 DEBUG Processing 518/522 atomic regions from SNP 155390 to 155990 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,696 DEBUG Processing 519/522 atomic regions from SNP 155690 to 156290 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,874 DEBUG Processing 520/522 atomic regions from SNP 155990 to 156590 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,048 DEBUG Processing 521/522 atomic regions from SNP 156290 to 156890 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,222 DEBUG Processing 522/522 atomic regions from SNP 156590 to 157190 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,331 DEBUG Unique SNPs positions in subchromosome 1: 157191 2025-01-31 10:00:36,463 DEBUG Subchromosome time: 122.06225558998995, subchromosome SNPs: 157191 2025-01-31 10:00:36,463 DEBUG Estimated BADs: [1.79, 0.45, 1.79, 0.60, 3.57, 5.36, 1.79, 5.36, 1.79, 5.36, 1.79, 5.36, 1.79, 3.57, 1.79, 0.89] SNP counts: [24516, 2660, 14746, 8653, 4912, 4751, 1676, 840, 39961, 2375, 10239, 855, 10937, 7982, 14352, 7736] SNP IDs counts: [24516, 2660, 14746, 8653, 4912, 4751, 1676, 840, 39961, 2375, 10239, 855, 10937, 7982, 14352, 7736] Critical gap: 507283bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.84Mbp, 18.45Mbp, 26.72Mbp, 31.61Mbp, 34.33Mbp, 36.80Mbp, 37.81Mbp, 38.24Mbp, 60.46Mbp, 61.71Mbp, 67.19Mbp, 67.64Mbp, 73.70Mbp, 78.03Mbp, 85.91Mbp, 90.70Mbp] 2025-01-31 10:00:36,463 DEBUG chr18 time: 122.06272933597211 s 2025-01-31 10:00:36,550 DEBUG chr18: Fitting background model for 16 segments 2025-01-31 10:00:54,628 DEBUG Results of fit_background_model emitted. 2025-01-31 10:00:54,766 INFO Signal to noise fit: SPOT=0.31±0.15 2025-01-31 10:00:54,775 INFO Final SPOT score: 0.31±0.15. Refitted 0 segments. 2025-01-31 10:00:54,838 INFO Estimating per-bp parameters of background model 2025-01-31 10:00:54,846 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:00:54,846 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 10:01:00,523 DEBUG chr5:3002500-5891251: Successfully fit background model for 2,534,472 bp. Use segment r for 0 bp 2025-01-31 10:01:01,103 DEBUG chr3:3000000-8530251: Successfully fit background model for 4,769,105 bp. Use segment r for 0 bp 2025-01-31 10:01:01,274 DEBUG chr3:8530251-10199751: Successfully fit background model for 1,533,445 bp. Use segment r for 0 bp 2025-01-31 10:01:01,741 DEBUG chr2:3051000-7534251: Successfully fit background model for 4,218,764 bp. Use segment r for 0 bp 2025-01-31 10:01:02,024 DEBUG chrX:3055000-7555751: Successfully fit background model for 2,009,371 bp. Use segment r for 0 bp 2025-01-31 10:01:02,072 DEBUG chrX:7555751-7910751: Successfully fit background model for 346,885 bp. Use segment r for 0 bp 2025-01-31 10:01:02,086 DEBUG chr4:3050000-16317751: Successfully fit background model for 11,644,689 bp. Use segment r for 0 bp 2025-01-31 10:01:02,345 DEBUG chr3:10199751-19149251: Successfully fit background model for 7,534,098 bp. Use segment r for 0 bp 2025-01-31 10:01:02,349 DEBUG chr4:16317751-18903251: Successfully fit background model for 2,226,494 bp. Use segment r for 0 bp 2025-01-31 10:01:02,450 DEBUG chr3:19149251-20026751: Successfully fit background model for 805,642 bp. Use segment r for 0 bp 2025-01-31 10:01:02,687 DEBUG chr1:3000500-9537251: Successfully fit background model for 5,694,165 bp. Use segment r for 0 bp 2025-01-31 10:01:02,744 DEBUG chr1:9537251-9927251: Successfully fit background model for 375,303 bp. Use segment r for 0 bp 2025-01-31 10:01:02,751 DEBUG chr4:18903251-22846751: Successfully fit background model for 3,443,915 bp. Use segment r for 0 bp 2025-01-31 10:01:02,872 DEBUG chrX:7910751-15270251: Successfully fit background model for 6,467,101 bp. Use segment r for 0 bp 2025-01-31 10:01:02,940 DEBUG chr2:7534251-18024751: Successfully fit background model for 9,483,199 bp. Use segment r for 0 bp 2025-01-31 10:01:02,973 DEBUG chr2:18024751-18080251: Successfully fit background model for 54,793 bp. Use segment r for 0 bp 2025-01-31 10:01:03,210 DEBUG chr5:5891251-20873751: Successfully fit background model for 11,945,137 bp. Use segment r for 140 bp 2025-01-31 10:01:03,364 DEBUG chr3:20026751-28282751: Successfully fit background model for 7,303,465 bp. Use segment r for 0 bp 2025-01-31 10:01:03,384 DEBUG chr1:9927251-16086251: Successfully fit background model for 5,542,918 bp. Use segment r for 0 bp 2025-01-31 10:01:03,403 DEBUG chr1:16086251-16139751: Successfully fit background model for 51,695 bp. Use segment r for 0 bp 2025-01-31 10:01:03,483 DEBUG chr5:20873751-23384751: Successfully fit background model for 2,290,958 bp. Use segment r for 0 bp 2025-01-31 10:01:03,647 DEBUG chr5:23384751-24901751: Successfully fit background model for 1,444,532 bp. Use segment r for 0 bp 2025-01-31 10:01:03,705 DEBUG chr2:18080251-24918751: Successfully fit background model for 6,089,311 bp. Use segment r for 0 bp 2025-01-31 10:01:03,970 DEBUG chr4:22846751-32654251: Successfully fit background model for 8,820,679 bp. Use segment r for 0 bp 2025-01-31 10:01:04,066 DEBUG chr4:32654251-33266751: Successfully fit background model for 591,126 bp. Use segment r for 0 bp 2025-01-31 10:01:04,214 DEBUG chr4:33266751-34755751: Successfully fit background model for 1,381,548 bp. Use segment r for 0 bp 2025-01-31 10:01:04,238 DEBUG chr5:24901751-30458751: Successfully fit background model for 4,977,286 bp. Use segment r for 0 bp 2025-01-31 10:01:04,460 DEBUG chr3:28282751-38530251: Successfully fit background model for 9,461,022 bp. Use segment r for 0 bp 2025-01-31 10:01:04,610 DEBUG chr2:24918751-32756751: Successfully fit background model for 7,598,878 bp. Use segment r for 0 bp 2025-01-31 10:01:04,856 DEBUG chr4:34755751-40134751: Successfully fit background model for 4,788,705 bp. Use segment r for 0 bp 2025-01-31 10:01:04,937 DEBUG chr5:30458751-36691251: Successfully fit background model for 5,950,720 bp. Use segment r for 0 bp 2025-01-31 10:01:04,958 DEBUG chr2:32756751-36277251: Successfully fit background model for 3,438,804 bp. Use segment r for 0 bp 2025-01-31 10:01:05,027 DEBUG chr4:40134751-41857501: Successfully fit background model for 1,562,355 bp. Use segment r for 0 bp 2025-01-31 10:01:05,032 DEBUG chr3:38530251-44504251: Successfully fit background model for 5,284,555 bp. Use segment r for 0 bp 2025-01-31 10:01:05,044 DEBUG chr2:36277251-36952001: Successfully fit background model for 558,703 bp. Use segment r for 0 bp 2025-01-31 10:01:05,158 DEBUG chrX:15270251-26917001: Successfully fit background model for 8,157,477 bp. Use segment r for 1,037 bp 2025-01-31 10:01:05,198 DEBUG chr5:36691251-39323251: Successfully fit background model for 2,485,093 bp. Use segment r for 0 bp 2025-01-31 10:01:05,298 DEBUG chr1:16139751-30870751: Successfully fit background model for 13,166,488 bp. Use segment r for 0 bp 2025-01-31 10:01:05,325 DEBUG chr3:44504251-47563751: Successfully fit background model for 2,732,314 bp. Use segment r for 0 bp 2025-01-31 10:01:05,334 DEBUG chr2:36952001-39699251: Successfully fit background model for 2,521,030 bp. Use segment r for 0 bp 2025-01-31 10:01:05,526 DEBUG chr3:47563751-49536751: Successfully fit background model for 1,737,855 bp. Use segment r for 0 bp 2025-01-31 10:01:05,579 DEBUG chr1:30870751-33598751: Successfully fit background model for 2,396,815 bp. Use segment r for 0 bp 2025-01-31 10:01:05,681 DEBUG chr4:42724000-48779751: Successfully fit background model for 5,762,774 bp. Use segment r for 0 bp 2025-01-31 10:01:05,694 DEBUG chr3:49536751-51215251: Successfully fit background model for 1,507,100 bp. Use segment r for 0 bp 2025-01-31 10:01:05,735 DEBUG chr3:51215251-51532751: Successfully fit background model for 306,365 bp. Use segment r for 0 bp 2025-01-31 10:01:05,767 DEBUG chr2:39699251-43931251: Successfully fit background model for 3,874,932 bp. Use segment r for 0 bp 2025-01-31 10:01:06,028 DEBUG chrX:31132500-39277251: Successfully fit background model for 3,120,259 bp. Use segment r for 0 bp 2025-01-31 10:01:06,071 DEBUG chr4:48779751-52687751: Successfully fit background model for 3,432,839 bp. Use segment r for 0 bp 2025-01-31 10:01:06,260 DEBUG chr1:33598751-39359251: Successfully fit background model for 5,497,060 bp. Use segment r for 0 bp 2025-01-31 10:01:06,790 DEBUG chr1:39359251-44097751: Successfully fit background model for 4,536,177 bp. Use segment r for 0 bp 2025-01-31 10:01:06,811 DEBUG chr1:44097751-44149251: Successfully fit background model for 50,177 bp. Use segment r for 0 bp 2025-01-31 10:01:06,822 DEBUG chr5:39323251-51005751: Successfully fit background model for 10,597,283 bp. Use segment r for 0 bp 2025-01-31 10:01:07,130 DEBUG chr2:43931251-53238751: Successfully fit background model for 8,727,040 bp. Use segment r for 0 bp 2025-01-31 10:01:07,184 DEBUG chr5:51005751-54573751: Successfully fit background model for 3,401,495 bp. Use segment r for 0 bp 2025-01-31 10:01:07,512 DEBUG chr2:53238751-57109251: Successfully fit background model for 3,315,037 bp. Use segment r for 0 bp 2025-01-31 10:01:07,601 DEBUG chrX:39277251-50563751: Successfully fit background model for 9,764,707 bp. Use segment r for 0 bp 2025-01-31 10:01:07,632 DEBUG chrX:50563751-50641251: Successfully fit background model for 71,264 bp. Use segment r for 0 bp 2025-01-31 10:01:07,661 DEBUG chr1:44149251-52074251: Successfully fit background model for 6,892,751 bp. Use segment r for 0 bp 2025-01-31 10:01:08,132 DEBUG chr2:57109251-62685751: Successfully fit background model for 5,207,342 bp. Use segment r for 0 bp 2025-01-31 10:01:08,249 DEBUG chr1:52074251-58391751: Successfully fit background model for 5,825,931 bp. Use segment r for 0 bp 2025-01-31 10:01:08,326 DEBUG chr5:54573751-63213251: Successfully fit background model for 7,646,594 bp. Use segment r for 0 bp 2025-01-31 10:01:08,586 DEBUG chr3:51532751-71559751: Successfully fit background model for 18,113,199 bp. Use segment r for 0 bp 2025-01-31 10:01:08,635 DEBUG chr2:62685751-67732251: Successfully fit background model for 4,658,226 bp. Use segment r for 0 bp 2025-01-31 10:01:08,704 DEBUG chr4:52687751-64232751: Successfully fit background model for 9,247,832 bp. Use segment r for 607 bp 2025-01-31 10:01:08,848 DEBUG chr2:67732251-69797751: Successfully fit background model for 1,947,328 bp. Use segment r for 0 bp 2025-01-31 10:01:08,934 DEBUG chr5:63213251-68631251: Successfully fit background model for 5,087,952 bp. Use segment r for 0 bp 2025-01-31 10:01:08,971 DEBUG chr1:58391751-65176251: Successfully fit background model for 6,365,398 bp. Use segment r for 0 bp 2025-01-31 10:01:09,233 DEBUG chr5:68631251-71702251: Successfully fit background model for 2,708,543 bp. Use segment r for 0 bp 2025-01-31 10:01:09,468 DEBUG chr3:71559751-79509251: Successfully fit background model for 7,105,045 bp. Use segment r for 0 bp 2025-01-31 10:01:09,591 DEBUG chr2:69797751-75708251: Successfully fit background model for 5,720,995 bp. Use segment r for 0 bp 2025-01-31 10:01:09,681 DEBUG chr1:65176251-72203251: Successfully fit background model for 6,480,423 bp. Use segment r for 0 bp 2025-01-31 10:01:09,755 DEBUG chr1:72203251-72310751: Successfully fit background model for 104,286 bp. Use segment r for 0 bp 2025-01-31 10:01:09,939 DEBUG chr3:79509251-84005751: Successfully fit background model for 4,140,818 bp. Use segment r for 0 bp 2025-01-31 10:01:10,042 DEBUG chr1:72310751-74233251: Successfully fit background model for 1,820,865 bp. Use segment r for 0 bp 2025-01-31 10:01:10,070 DEBUG chr5:71702251-78423251: Successfully fit background model for 6,293,418 bp. Use segment r for 0 bp 2025-01-31 10:01:10,159 DEBUG chr1:74233251-75338751: Successfully fit background model for 1,009,790 bp. Use segment r for 0 bp 2025-01-31 10:01:10,180 DEBUG chr2:75708251-80967251: Successfully fit background model for 4,949,201 bp. Use segment r for 0 bp 2025-01-31 10:01:10,307 DEBUG chr3:84005751-87739251: Successfully fit background model for 3,555,996 bp. Use segment r for 0 bp 2025-01-31 10:01:10,560 DEBUG chr5:78423251-83716751: Successfully fit background model for 4,773,830 bp. Use segment r for 0 bp 2025-01-31 10:01:10,561 DEBUG chr2:80967251-84649751: Successfully fit background model for 3,130,410 bp. Use segment r for 0 bp 2025-01-31 10:01:10,584 DEBUG chr3:87739251-90465251: Successfully fit background model for 2,589,914 bp. Use segment r for 0 bp 2025-01-31 10:01:10,645 DEBUG chr2:84649751-85286751: Successfully fit background model for 606,966 bp. Use segment r for 0 bp 2025-01-31 10:01:11,020 DEBUG chrX:50641251-72953251: Successfully fit background model for 18,215,826 bp. Use segment r for 0 bp 2025-01-31 10:01:11,043 DEBUG chr3:90465251-94309251: Successfully fit background model for 2,934,885 bp. Use segment r for 0 bp 2025-01-31 10:01:11,206 DEBUG chr4:64232751-80608751: Successfully fit background model for 14,491,576 bp. Use segment r for 0 bp 2025-01-31 10:01:11,231 DEBUG chrX:72953251-74242251: Successfully fit background model for 1,073,340 bp. Use segment r for 0 bp 2025-01-31 10:01:11,313 DEBUG chr2:85286751-89484251: Successfully fit background model for 3,665,201 bp. Use segment r for 0 bp 2025-01-31 10:01:11,361 DEBUG chr3:94309251-96808501: Successfully fit background model for 2,296,064 bp. Use segment r for 0 bp 2025-01-31 10:01:11,464 DEBUG chr2:89484251-90915251: Successfully fit background model for 1,098,950 bp. Use segment r for 0 bp 2025-01-31 10:01:11,564 DEBUG chrX:74242251-77431251: Successfully fit background model for 2,469,435 bp. Use segment r for 0 bp 2025-01-31 10:01:11,677 DEBUG chr1:75338751-84837251: Successfully fit background model for 8,765,888 bp. Use segment r for 0 bp 2025-01-31 10:01:11,712 DEBUG chr3:96808501-100382751: Successfully fit background model for 3,147,489 bp. Use segment r for 0 bp 2025-01-31 10:01:11,812 DEBUG chr5:83716751-91959751: Successfully fit background model for 7,377,706 bp. Use segment r for 0 bp 2025-01-31 10:01:11,868 DEBUG chr1:84837251-86293751: Successfully fit background model for 919,968 bp. Use segment r for 0 bp 2025-01-31 10:01:11,908 DEBUG chr1:86293751-86534251: Successfully fit background model for 231,912 bp. Use segment r for 0 bp 2025-01-31 10:01:11,961 DEBUG chr2:90915251-95039751: Successfully fit background model for 3,979,993 bp. Use segment r for 0 bp 2025-01-31 10:01:12,631 DEBUG chr2:95039751-100614001: Successfully fit background model for 4,742,559 bp. Use segment r for 0 bp 2025-01-31 10:01:12,655 DEBUG chr1:86534251-93342251: Successfully fit background model for 6,527,641 bp. Use segment r for 0 bp 2025-01-31 10:01:12,734 DEBUG chr3:100382751-108705251: Successfully fit background model for 7,889,244 bp. Use segment r for 0 bp 2025-01-31 10:01:12,748 DEBUG chr1:93342251-93845251: Successfully fit background model for 485,171 bp. Use segment r for 0 bp 2025-01-31 10:01:13,403 DEBUG chr1:93845251-99227251: Successfully fit background model for 4,596,546 bp. Use segment r for 0 bp 2025-01-31 10:01:13,515 DEBUG chr4:80608751-97171251: Successfully fit background model for 14,942,506 bp. Use segment r for 0 bp 2025-01-31 10:01:13,568 DEBUG chr3:108705251-115708751: Successfully fit background model for 6,036,993 bp. Use segment r for 0 bp 2025-01-31 10:01:13,568 DEBUG chr2:100614001-107990251: Successfully fit background model for 6,812,953 bp. Use segment r for 0 bp 2025-01-31 10:01:13,636 DEBUG chrX:77431251-91311251: Successfully fit background model for 12,008,304 bp. Use segment r for 0 bp 2025-01-31 10:01:13,702 DEBUG chr3:115708751-116689751: Successfully fit background model for 942,380 bp. Use segment r for 0 bp 2025-01-31 10:01:13,945 DEBUG chr1:99227251-104141251: Successfully fit background model for 4,344,437 bp. Use segment r for 0 bp 2025-01-31 10:01:14,405 DEBUG chr5:91959751-103586251: Successfully fit background model for 8,873,022 bp. Use segment r for 589 bp 2025-01-31 10:01:14,451 DEBUG chr1:104141251-108062751: Successfully fit background model for 3,548,733 bp. Use segment r for 0 bp 2025-01-31 10:01:14,524 DEBUG chrX:91311251-95933251: Successfully fit background model for 3,673,309 bp. Use segment r for 0 bp 2025-01-31 10:01:14,604 DEBUG chr3:116689751-121149251: Successfully fit background model for 4,118,801 bp. Use segment r for 0 bp 2025-01-31 10:01:14,783 DEBUG chr4:97171251-106705251: Successfully fit background model for 8,969,751 bp. Use segment r for 0 bp 2025-01-31 10:01:14,855 DEBUG chr3:121149251-122919751: Successfully fit background model for 1,725,233 bp. Use segment r for 0 bp 2025-01-31 10:01:14,910 DEBUG chrX:95933251-99321751: Successfully fit background model for 2,942,489 bp. Use segment r for 0 bp 2025-01-31 10:01:15,287 DEBUG chr4:106705251-110396751: Successfully fit background model for 3,502,661 bp. Use segment r for 0 bp 2025-01-31 10:01:15,458 DEBUG chr2:107990251-118637251: Successfully fit background model for 9,737,760 bp. Use segment r for 0 bp 2025-01-31 10:01:15,527 DEBUG chr4:110396751-112006251: Successfully fit background model for 1,417,528 bp. Use segment r for 0 bp 2025-01-31 10:01:15,831 DEBUG chr3:122919751-127240751: Successfully fit background model for 3,989,822 bp. Use segment r for 0 bp 2025-01-31 10:01:15,871 DEBUG chr4:112006251-113825251: Successfully fit background model for 1,590,292 bp. Use segment r for 0 bp 2025-01-31 10:01:16,017 DEBUG chr4:113825251-115038251: Successfully fit background model for 1,106,789 bp. Use segment r for 0 bp 2025-01-31 10:01:16,056 DEBUG chr2:118637251-123043251: Successfully fit background model for 4,182,729 bp. Use segment r for 0 bp 2025-01-31 10:01:16,152 DEBUG chr2:123043251-123746251: Successfully fit background model for 635,918 bp. Use segment r for 0 bp 2025-01-31 10:01:16,171 DEBUG chrX:99321751-106008251: Successfully fit background model for 5,988,460 bp. Use segment r for 0 bp 2025-01-31 10:01:16,338 DEBUG chr3:127240751-131559251: Successfully fit background model for 4,016,524 bp. Use segment r for 0 bp 2025-01-31 10:01:16,529 DEBUG chr2:123746251-127206751: Successfully fit background model for 3,247,269 bp. Use segment r for 0 bp 2025-01-31 10:01:16,720 DEBUG chr3:131559251-135268251: Successfully fit background model for 3,356,183 bp. Use segment r for 0 bp 2025-01-31 10:01:16,795 DEBUG chr3:135268251-135814251: Successfully fit background model for 521,437 bp. Use segment r for 0 bp 2025-01-31 10:01:16,980 DEBUG chr2:127206751-131039751: Successfully fit background model for 3,692,242 bp. Use segment r for 0 bp 2025-01-31 10:01:17,022 DEBUG chr2:131039751-131264251: Successfully fit background model for 217,206 bp. Use segment r for 0 bp 2025-01-31 10:01:17,156 DEBUG chr1:108062751-118309251: Successfully fit background model for 8,919,295 bp. Use segment r for 0 bp 2025-01-31 10:01:17,172 DEBUG chrX:106008251-113378751: Successfully fit background model for 6,163,653 bp. Use segment r for 0 bp 2025-01-31 10:01:17,298 DEBUG chr3:135814251-139221751: Successfully fit background model for 3,202,547 bp. Use segment r for 0 bp 2025-01-31 10:01:17,373 DEBUG chr1:118309251-120009751: Successfully fit background model for 1,651,994 bp. Use segment r for 0 bp 2025-01-31 10:01:17,567 DEBUG chr5:103586251-120100751: Successfully fit background model for 15,589,665 bp. Use segment r for 0 bp 2025-01-31 10:01:17,575 DEBUG chr3:139221751-141674251: Successfully fit background model for 2,217,522 bp. Use segment r for 0 bp 2025-01-31 10:01:18,227 DEBUG chr5:120100751-125341751: Successfully fit background model for 5,019,906 bp. Use segment r for 0 bp 2025-01-31 10:01:18,459 DEBUG chr3:141674251-147146751: Successfully fit background model for 5,198,561 bp. Use segment r for 0 bp 2025-01-31 10:01:18,527 DEBUG chr2:131264251-137868751: Successfully fit background model for 6,199,041 bp. Use segment r for 0 bp 2025-01-31 10:01:18,666 DEBUG chr5:125341751-129722751: Successfully fit background model for 4,189,806 bp. Use segment r for 0 bp 2025-01-31 10:01:18,714 DEBUG chr5:129722751-130075751: Successfully fit background model for 293,436 bp. Use segment r for 0 bp 2025-01-31 10:01:18,900 DEBUG chr3:147146751-151716251: Successfully fit background model for 4,308,908 bp. Use segment r for 0 bp 2025-01-31 10:01:19,123 DEBUG chr2:137868751-143869751: Successfully fit background model for 5,544,207 bp. Use segment r for 0 bp 2025-01-31 10:01:19,130 DEBUG chr5:130075751-134141251: Successfully fit background model for 3,900,414 bp. Use segment r for 0 bp 2025-01-31 10:01:19,206 DEBUG chr3:151716251-154983751: Successfully fit background model for 3,107,318 bp. Use segment r for 0 bp 2025-01-31 10:01:19,217 DEBUG chr1:120009751-130711751: Successfully fit background model for 9,949,720 bp. Use segment r for 0 bp 2025-01-31 10:01:19,443 DEBUG chr4:115038251-131760251: Successfully fit background model for 15,058,305 bp. Use segment r for 0 bp 2025-01-31 10:01:19,524 DEBUG chr5:134141251-138282251: Successfully fit background model for 3,884,584 bp. Use segment r for 0 bp 2025-01-31 10:01:19,597 DEBUG chr2:143869751-148938251: Successfully fit background model for 4,802,267 bp. Use segment r for 0 bp 2025-01-31 10:01:19,716 DEBUG chr3:154983751-160039680: Successfully fit background model for 4,442,813 bp. Use segment r for 0 bp 2025-01-31 10:01:19,719 DEBUG chrX:113378751-124238001: Successfully fit background model for 8,510,099 bp. Use segment r for 2,470 bp 2025-01-31 10:01:19,748 DEBUG chr1:130711751-136295751: Successfully fit background model for 5,432,898 bp. Use segment r for 0 bp 2025-01-31 10:01:19,806 DEBUG chr2:148938251-150903751: Successfully fit background model for 1,702,636 bp. Use segment r for 0 bp 2025-01-31 10:01:20,072 DEBUG chr1:136295751-139555251: Successfully fit background model for 3,053,655 bp. Use segment r for 0 bp 2025-01-31 10:01:20,354 DEBUG chr1:139555251-142287751: Successfully fit background model for 2,338,700 bp. Use segment r for 0 bp 2025-01-31 10:01:20,515 DEBUG chrX:126004000-133852751: Successfully fit background model for 6,746,768 bp. Use segment r for 0 bp 2025-01-31 10:01:20,607 DEBUG chr4:131760251-141789751: Successfully fit background model for 9,795,088 bp. Use segment r for 0 bp 2025-01-31 10:01:20,614 DEBUG chr1:142287751-144612751: Successfully fit background model for 1,991,250 bp. Use segment r for 0 bp 2025-01-31 10:01:20,622 DEBUG chr2:150903751-158505251: Successfully fit background model for 7,032,428 bp. Use segment r for 0 bp 2025-01-31 10:01:21,090 DEBUG chr5:138282251-151834684: Successfully fit background model for 12,581,402 bp. Use segment r for 0 bp 2025-01-31 10:01:21,097 DEBUG chr2:158505251-163345251: Successfully fit background model for 4,630,353 bp. Use segment r for 0 bp 2025-01-31 10:01:21,208 DEBUG chr4:141789751-147866251: Successfully fit background model for 3,847,018 bp. Use segment r for 0 bp 2025-01-31 10:01:21,249 DEBUG chr1:144612751-150390251: Successfully fit background model for 5,072,290 bp. Use segment r for 0 bp 2025-01-31 10:01:21,387 DEBUG chrX:133852751-142604251: Successfully fit background model for 7,590,578 bp. Use segment r for 0 bp 2025-01-31 10:01:21,613 DEBUG chr2:163345251-167956751: Successfully fit background model for 4,441,045 bp. Use segment r for 0 bp 2025-01-31 10:01:21,993 DEBUG chr4:147866251-155559251: Successfully fit background model for 7,535,977 bp. Use segment r for 0 bp 2025-01-31 10:01:22,044 DEBUG chr2:167956751-172245751: Successfully fit background model for 4,167,921 bp. Use segment r for 0 bp 2025-01-31 10:01:22,116 DEBUG chr4:155559251-156508116: Successfully fit background model for 688,356 bp. Use segment r for 0 bp 2025-01-31 10:01:22,565 DEBUG chr2:172245751-175179501: Successfully fit background model for 2,708,722 bp. Use segment r for 1,439 bp 2025-01-31 10:01:22,662 DEBUG chrX:142604251-150433751: Successfully fit background model for 4,952,768 bp. Use segment r for 783 bp 2025-01-31 10:01:22,966 DEBUG chr2:176700000-179814251: Successfully fit background model for 1,924,511 bp. Use segment r for 0 bp 2025-01-31 10:01:22,986 DEBUG chr1:150390251-162528751: Successfully fit background model for 11,525,541 bp. Use segment r for 0 bp 2025-01-31 10:01:23,237 DEBUG chr2:179814251-182113224: Successfully fit background model for 2,108,229 bp. Use segment r for 0 bp 2025-01-31 10:01:23,261 DEBUG chr1:162528751-165069751: Successfully fit background model for 2,362,671 bp. Use segment r for 0 bp 2025-01-31 10:01:23,370 DEBUG chr1:165069751-166008251: Successfully fit background model for 882,592 bp. Use segment r for 0 bp 2025-01-31 10:01:23,905 DEBUG chr1:166008251-170834751: Successfully fit background model for 4,484,965 bp. Use segment r for 0 bp 2025-01-31 10:01:24,075 DEBUG chr1:170834751-172309251: Successfully fit background model for 1,370,037 bp. Use segment r for 0 bp 2025-01-31 10:01:24,962 DEBUG chr1:172309251-178301751: Successfully fit background model for 5,406,796 bp. Use segment r for 0 bp 2025-01-31 10:01:25,282 DEBUG chr1:178301751-181308251: Successfully fit background model for 2,897,839 bp. Use segment r for 0 bp 2025-01-31 10:01:25,720 DEBUG chr1:181308251-185445501: Successfully fit background model for 3,859,969 bp. Use segment r for 0 bp 2025-01-31 10:01:25,749 DEBUG chr1:185445501-185517751: Successfully fit background model for 71,624 bp. Use segment r for 0 bp 2025-01-31 10:01:26,436 DEBUG chr1:185517751-190875751: Successfully fit background model for 5,158,172 bp. Use segment r for 0 bp 2025-01-31 10:01:26,574 DEBUG chr1:190875751-191959251: Successfully fit background model for 1,041,599 bp. Use segment r for 0 bp 2025-01-31 10:01:27,125 DEBUG chr1:191959251-195471971: Successfully fit background model for 3,161,306 bp. Use segment r for 0 bp 2025-01-31 10:01:28,659 DEBUG chrX:150433751-169967751: Successfully fit background model for 17,409,685 bp. Use segment r for 471 bp 2025-01-31 10:01:28,807 DEBUG chrX:169967751-171031299: Successfully fit background model for 15,918 bp. Use segment r for 0 bp 2025-01-31 10:02:56,079 DEBUG chr6:3050000-9190751: Successfully fit background model for 5,459,812 bp. Use segment r for 0 bp 2025-01-31 10:02:56,244 DEBUG chr10:3101500-5757251: Successfully fit background model for 2,433,205 bp. Use segment r for 0 bp 2025-01-31 10:02:56,261 DEBUG chr10:5757251-5847251: Successfully fit background model for 86,968 bp. Use segment r for 0 bp 2025-01-31 10:02:56,812 DEBUG chr7:3004000-3578251: Successfully fit background model for 428,387 bp. Use segment r for 0 bp 2025-01-31 10:02:56,981 DEBUG chr7:3578251-5112751: Successfully fit background model for 1,232,057 bp. Use segment r for 0 bp 2025-01-31 10:02:57,046 DEBUG chr7:5112751-5699751: Successfully fit background model for 429,471 bp. Use segment r for 0 bp 2025-01-31 10:02:57,202 DEBUG chr7:5699751-7300751: Successfully fit background model for 1,342,801 bp. Use segment r for 0 bp 2025-01-31 10:02:58,062 DEBUG chr7:7300751-12880751: Successfully fit background model for 2,147,423 bp. Use segment r for 4,401 bp 2025-01-31 10:02:58,092 DEBUG chr7:12880751-13055751: Successfully fit background model for 169,923 bp. Use segment r for 0 bp 2025-01-31 10:02:58,184 DEBUG chr6:9190751-28388251: Successfully fit background model for 17,009,517 bp. Use segment r for 0 bp 2025-01-31 10:02:58,504 DEBUG chr6:28388251-31513251: Successfully fit background model for 2,993,711 bp. Use segment r for 0 bp 2025-01-31 10:02:58,553 DEBUG chr7:13055751-15916751: Successfully fit background model for 1,770,966 bp. Use segment r for 1,342 bp 2025-01-31 10:02:58,675 DEBUG chr7:15916751-17100251: Successfully fit background model for 1,148,173 bp. Use segment r for 0 bp 2025-01-31 10:02:58,947 DEBUG chr7:17100251-18988751: Successfully fit background model for 1,351,031 bp. Use segment r for 3,614 bp 2025-01-31 10:02:59,070 DEBUG chr7:18988751-20070501: Successfully fit background model for 1,031,981 bp. Use segment r for 0 bp 2025-01-31 10:02:59,139 DEBUG chr6:31513251-37862251: Successfully fit background model for 5,964,270 bp. Use segment r for 0 bp 2025-01-31 10:02:59,237 DEBUG chr6:37862251-38806751: Successfully fit background model for 912,521 bp. Use segment r for 0 bp 2025-01-31 10:02:59,295 DEBUG chr7:22765000-24287251: Successfully fit background model for 830,282 bp. Use segment r for 7,461 bp 2025-01-31 10:02:59,455 DEBUG chr7:24287251-25928251: Successfully fit background model for 1,542,555 bp. Use segment r for 0 bp 2025-01-31 10:02:59,579 DEBUG chr7:25928251-27160001: Successfully fit background model for 963,813 bp. Use segment r for 0 bp 2025-01-31 10:02:59,733 DEBUG chr6:38806751-44474251: Successfully fit background model for 5,124,492 bp. Use segment r for 0 bp 2025-01-31 10:02:59,967 DEBUG chr7:27160001-31145751: Successfully fit background model for 3,755,487 bp. Use segment r for 0 bp 2025-01-31 10:03:00,013 DEBUG chr6:44474251-47593751: Successfully fit background model for 2,818,072 bp. Use segment r for 0 bp 2025-01-31 10:03:00,334 DEBUG chr7:31145751-33661751: Successfully fit background model for 949,658 bp. Use segment r for 426 bp 2025-01-31 10:03:00,369 DEBUG chr6:47593751-51518751: Successfully fit background model for 3,580,137 bp. Use segment r for 0 bp 2025-01-31 10:03:00,783 DEBUG chr7:33661751-38272751: Successfully fit background model for 4,427,620 bp. Use segment r for 0 bp 2025-01-31 10:03:00,911 DEBUG chr10:5847251-33024751: Successfully fit background model for 24,672,226 bp. Use segment r for 132 bp 2025-01-31 10:03:01,165 DEBUG chr6:51518751-59452751: Successfully fit background model for 7,377,382 bp. Use segment r for 0 bp 2025-01-31 10:03:01,480 DEBUG chr7:38272751-43115251: Successfully fit background model for 3,358,395 bp. Use segment r for 93 bp 2025-01-31 10:03:01,616 DEBUG chr10:33024751-39730751: Successfully fit background model for 6,089,065 bp. Use segment r for 0 bp 2025-01-31 10:03:01,657 DEBUG chr7:43115251-44814751: Successfully fit background model for 1,596,401 bp. Use segment r for 0 bp 2025-01-31 10:03:01,746 DEBUG chr7:44814751-45560251: Successfully fit background model for 731,232 bp. Use segment r for 0 bp 2025-01-31 10:03:01,908 DEBUG chr7:45560251-47171751: Successfully fit background model for 1,579,917 bp. Use segment r for 0 bp 2025-01-31 10:03:01,978 DEBUG chr10:39730751-43541751: Successfully fit background model for 3,656,956 bp. Use segment r for 0 bp 2025-01-31 10:03:02,039 DEBUG chr7:47171751-48479751: Successfully fit background model for 1,044,612 bp. Use segment r for 0 bp 2025-01-31 10:03:02,195 DEBUG chr7:48479751-49970251: Successfully fit background model for 1,415,914 bp. Use segment r for 0 bp 2025-01-31 10:03:02,311 DEBUG chr10:43541751-47020251: Successfully fit background model for 3,212,485 bp. Use segment r for 0 bp 2025-01-31 10:03:02,339 DEBUG chr6:59452751-70709501: Successfully fit background model for 9,683,366 bp. Use segment r for 0 bp 2025-01-31 10:03:02,414 DEBUG chr7:49970251-52082251: Successfully fit background model for 1,850,468 bp. Use segment r for 0 bp 2025-01-31 10:03:02,522 DEBUG chr6:70709501-72489751: Successfully fit background model for 1,717,884 bp. Use segment r for 0 bp 2025-01-31 10:03:02,558 DEBUG chr10:47020251-49614251: Successfully fit background model for 2,276,850 bp. Use segment r for 0 bp 2025-01-31 10:03:02,696 DEBUG chr6:72489751-74344251: Successfully fit background model for 1,706,022 bp. Use segment r for 0 bp 2025-01-31 10:03:02,733 DEBUG chr7:52082251-55308751: Successfully fit background model for 2,837,018 bp. Use segment r for 0 bp 2025-01-31 10:03:02,842 DEBUG chr7:55308751-56369751: Successfully fit background model for 931,363 bp. Use segment r for 0 bp 2025-01-31 10:03:03,165 DEBUG chr6:74344251-79039251: Successfully fit background model for 4,254,837 bp. Use segment r for 0 bp 2025-01-31 10:03:03,525 DEBUG chr6:79039251-82996251: Successfully fit background model for 3,564,754 bp. Use segment r for 0 bp 2025-01-31 10:03:03,536 DEBUG chr10:49614251-58223001: Successfully fit background model for 7,351,871 bp. Use segment r for 0 bp 2025-01-31 10:03:03,610 DEBUG chr7:56369751-63884251: Successfully fit background model for 6,241,859 bp. Use segment r for 0 bp 2025-01-31 10:03:03,637 DEBUG chr7:63884251-64006251: Successfully fit background model for 120,034 bp. Use segment r for 0 bp 2025-01-31 10:03:04,157 DEBUG chr10:58223001-64143751: Successfully fit background model for 5,660,781 bp. Use segment r for 0 bp 2025-01-31 10:03:04,158 DEBUG chr7:64006251-69213751: Successfully fit background model for 4,938,038 bp. Use segment r for 0 bp 2025-01-31 10:03:04,333 DEBUG chr10:64143751-65307751: Successfully fit background model for 1,005,523 bp. Use segment r for 79,556 bp 2025-01-31 10:03:04,414 DEBUG chr6:82996251-91650251: Successfully fit background model for 8,171,979 bp. Use segment r for 0 bp 2025-01-31 10:03:04,583 DEBUG chr7:69213751-73556751: Successfully fit background model for 4,057,169 bp. Use segment r for 0 bp 2025-01-31 10:03:04,600 DEBUG chr7:73556751-73620751: Successfully fit background model for 62,980 bp. Use segment r for 0 bp 2025-01-31 10:03:05,177 DEBUG chr7:73620751-79240501: Successfully fit background model for 5,211,841 bp. Use segment r for 0 bp 2025-01-31 10:03:05,357 DEBUG chr7:79240501-80992251: Successfully fit background model for 1,707,179 bp. Use segment r for 0 bp 2025-01-31 10:03:05,536 DEBUG chr10:65307751-75500251: Successfully fit background model for 9,428,971 bp. Use segment r for 0 bp 2025-01-31 10:03:05,722 DEBUG chr7:80992251-84919751: Successfully fit background model for 3,698,028 bp. Use segment r for 0 bp 2025-01-31 10:03:05,802 DEBUG chr6:91650251-104193251: Successfully fit background model for 11,846,797 bp. Use segment r for 0 bp 2025-01-31 10:03:05,929 DEBUG chr10:75500251-79609251: Successfully fit background model for 3,814,167 bp. Use segment r for 0 bp 2025-01-31 10:03:06,057 DEBUG chr7:84919751-88414501: Successfully fit background model for 3,097,670 bp. Use segment r for 0 bp 2025-01-31 10:03:06,166 DEBUG chr10:79609251-82083751: Successfully fit background model for 2,085,327 bp. Use segment r for 0 bp 2025-01-31 10:03:06,274 DEBUG chr7:88414501-90611751: Successfully fit background model for 2,003,582 bp. Use segment r for 0 bp 2025-01-31 10:03:06,507 DEBUG chr7:90611751-92841251: Successfully fit background model for 2,079,278 bp. Use segment r for 0 bp 2025-01-31 10:03:06,543 DEBUG chr7:92841251-93117751: Successfully fit background model for 251,614 bp. Use segment r for 0 bp 2025-01-31 10:03:06,601 DEBUG chr10:82083751-86828251: Successfully fit background model for 4,399,610 bp. Use segment r for 0 bp 2025-01-31 10:03:06,606 DEBUG chr6:104193251-112694751: Successfully fit background model for 7,686,139 bp. Use segment r for 0 bp 2025-01-31 10:03:06,712 DEBUG chr6:112694751-113632251: Successfully fit background model for 911,684 bp. Use segment r for 0 bp 2025-01-31 10:03:06,786 DEBUG chr7:93117751-95282251: Successfully fit background model for 1,914,052 bp. Use segment r for 0 bp 2025-01-31 10:03:07,066 DEBUG chr7:95282251-98048751: Successfully fit background model for 2,603,846 bp. Use segment r for 0 bp 2025-01-31 10:03:07,588 DEBUG chr7:98048751-103171251: Successfully fit background model for 4,924,913 bp. Use segment r for 0 bp 2025-01-31 10:03:08,169 DEBUG chr10:86828251-101070001: Successfully fit background model for 13,368,742 bp. Use segment r for 0 bp 2025-01-31 10:03:08,323 DEBUG chr7:103171251-108360751: Successfully fit background model for 4,077,688 bp. Use segment r for 1,811 bp 2025-01-31 10:03:08,373 DEBUG chr6:113632251-122834751: Successfully fit background model for 8,529,390 bp. Use segment r for 116 bp 2025-01-31 10:03:08,527 DEBUG chr10:101070001-104751501: Successfully fit background model for 3,310,878 bp. Use segment r for 0 bp 2025-01-31 10:03:08,646 DEBUG chr6:122834751-124662251: Successfully fit background model for 1,335,828 bp. Use segment r for 32 bp 2025-01-31 10:03:08,719 DEBUG chr6:124662251-125284251: Successfully fit background model for 596,637 bp. Use segment r for 0 bp 2025-01-31 10:03:09,168 DEBUG chr6:125284251-129955001: Successfully fit background model for 4,396,328 bp. Use segment r for 0 bp 2025-01-31 10:03:09,439 DEBUG chr6:129955001-132811251: Successfully fit background model for 2,310,909 bp. Use segment r for 0 bp 2025-01-31 10:03:09,639 DEBUG chr6:132811251-134788251: Successfully fit background model for 1,693,768 bp. Use segment r for 0 bp 2025-01-31 10:03:09,732 DEBUG chr10:104751501-115238751: Successfully fit background model for 9,693,256 bp. Use segment r for 0 bp 2025-01-31 10:03:09,831 DEBUG chr6:134788251-136859751: Successfully fit background model for 2,005,659 bp. Use segment r for 0 bp 2025-01-31 10:03:10,364 DEBUG chr7:108360751-126198251: Successfully fit background model for 16,982,339 bp. Use segment r for 0 bp 2025-01-31 10:03:10,646 DEBUG chr7:126198251-128514751: Successfully fit background model for 2,231,092 bp. Use segment r for 0 bp 2025-01-31 10:03:10,722 DEBUG chr10:115238751-124215751: Successfully fit background model for 8,428,236 bp. Use segment r for 0 bp 2025-01-31 10:03:10,983 DEBUG chr10:124215751-126895751: Successfully fit background model for 2,489,059 bp. Use segment r for 0 bp 2025-01-31 10:03:11,211 DEBUG chr10:126895751-129347251: Successfully fit background model for 2,306,768 bp. Use segment r for 0 bp 2025-01-31 10:03:11,269 DEBUG chr6:136859751-149736546: Successfully fit background model for 11,900,078 bp. Use segment r for 0 bp 2025-01-31 10:03:11,347 DEBUG chr10:129347251-130694993: Successfully fit background model for 1,047,007 bp. Use segment r for 0 bp 2025-01-31 10:03:12,112 DEBUG chr7:128514751-140805751: Successfully fit background model for 11,733,001 bp. Use segment r for 0 bp 2025-01-31 10:03:12,204 DEBUG chr7:140805751-141540001: Successfully fit background model for 717,957 bp. Use segment r for 0 bp 2025-01-31 10:03:12,600 DEBUG chr7:141540001-145441459: Successfully fit background model for 3,630,501 bp. Use segment r for 0 bp 2025-01-31 10:03:16,151 DEBUG chr8:3005000-4717251: Successfully fit background model for 1,441,749 bp. Use segment r for 1,318 bp 2025-01-31 10:03:16,653 DEBUG chr8:4717251-9721251: Successfully fit background model for 4,538,674 bp. Use segment r for 0 bp 2025-01-31 10:03:17,178 DEBUG chr8:9721251-14865001: Successfully fit background model for 4,970,694 bp. Use segment r for 0 bp 2025-01-31 10:03:20,026 DEBUG chr8:14865001-28037251: Successfully fit background model for 10,693,404 bp. Use segment r for 22,612 bp 2025-01-31 10:03:20,264 DEBUG chr8:28037251-30375251: Successfully fit background model for 2,065,149 bp. Use segment r for 0 bp 2025-01-31 10:03:20,973 DEBUG chr8:30375251-36962751: Successfully fit background model for 6,183,688 bp. Use segment r for 0 bp 2025-01-31 10:03:21,676 DEBUG chr8:36962751-43921251: Successfully fit background model for 6,149,525 bp. Use segment r for 0 bp 2025-01-31 10:03:22,281 DEBUG chr8:43921251-49307251: Successfully fit background model for 5,094,877 bp. Use segment r for 0 bp 2025-01-31 10:03:23,100 DEBUG chr8:49307251-57486751: Successfully fit background model for 7,083,599 bp. Use segment r for 0 bp 2025-01-31 10:03:23,172 DEBUG chr8:57486751-58013751: Successfully fit background model for 494,418 bp. Use segment r for 0 bp 2025-01-31 10:03:23,501 DEBUG chr8:58013751-60942251: Successfully fit background model for 2,545,636 bp. Use segment r for 0 bp 2025-01-31 10:03:23,514 DEBUG chr8:60942251-60993751: Successfully fit background model for 50,651 bp. Use segment r for 0 bp 2025-01-31 10:03:24,606 DEBUG chr8:60993751-69623251: Successfully fit background model for 7,707,087 bp. Use segment r for 0 bp 2025-01-31 10:03:24,753 DEBUG chr14:3006500-5126501: Successfully fit background model for 73,199 bp. Use segment r for 1,572 bp 2025-01-31 10:03:25,180 DEBUG chr8:69623251-72515251: Successfully fit background model for 2,597,796 bp. Use segment r for 0 bp 2025-01-31 10:03:26,754 DEBUG chr8:72515251-83566251: Successfully fit background model for 10,028,865 bp. Use segment r for 0 bp 2025-01-31 10:03:27,102 DEBUG chr8:83566251-85086751: Successfully fit background model for 1,493,251 bp. Use segment r for 0 bp 2025-01-31 10:03:27,983 DEBUG chr14:5838000-19694251: Successfully fit background model for 10,941,556 bp. Use segment r for 807 bp 2025-01-31 10:03:28,216 DEBUG chr14:19694251-21840751: Successfully fit background model for 2,076,718 bp. Use segment r for 0 bp 2025-01-31 10:03:29,079 DEBUG chr14:21840751-29710751: Successfully fit background model for 7,106,114 bp. Use segment r for 0 bp 2025-01-31 10:03:29,242 DEBUG chr8:85086751-94081751: Successfully fit background model for 8,589,121 bp. Use segment r for 0 bp 2025-01-31 10:03:29,311 DEBUG chr14:29710751-31939751: Successfully fit background model for 2,161,448 bp. Use segment r for 0 bp 2025-01-31 10:03:29,631 DEBUG chr14:31939751-35255251: Successfully fit background model for 3,183,901 bp. Use segment r for 0 bp 2025-01-31 10:03:29,876 DEBUG chr14:35255251-37292751: Successfully fit background model for 1,847,507 bp. Use segment r for 0 bp 2025-01-31 10:03:30,141 DEBUG chr8:94081751-96674751: Successfully fit background model for 2,453,958 bp. Use segment r for 0 bp 2025-01-31 10:03:31,101 DEBUG chr14:37292751-45279751: Successfully fit background model for 4,741,061 bp. Use segment r for 27 bp 2025-01-31 10:03:31,324 DEBUG chr14:45279751-47514251: Successfully fit background model for 2,116,231 bp. Use segment r for 0 bp 2025-01-31 10:03:31,661 DEBUG chr14:47514251-50771251: Successfully fit background model for 2,978,854 bp. Use segment r for 0 bp 2025-01-31 10:03:31,761 DEBUG chr8:96674751-102742751: Successfully fit background model for 5,546,008 bp. Use segment r for 0 bp 2025-01-31 10:03:32,007 DEBUG chr8:102742751-104534251: Successfully fit background model for 1,700,488 bp. Use segment r for 0 bp 2025-01-31 10:03:32,368 DEBUG chr8:104534251-107380751: Successfully fit background model for 2,666,482 bp. Use segment r for 0 bp 2025-01-31 10:03:32,473 DEBUG chr14:50771251-58608751: Successfully fit background model for 6,564,589 bp. Use segment r for 0 bp 2025-01-31 10:03:32,917 DEBUG chr8:107380751-110844751: Successfully fit background model for 3,368,571 bp. Use segment r for 0 bp 2025-01-31 10:03:33,125 DEBUG chr8:110844751-111850751: Successfully fit background model for 976,921 bp. Use segment r for 0 bp 2025-01-31 10:03:33,939 DEBUG chr14:58608751-71246751: Successfully fit background model for 11,654,818 bp. Use segment r for 0 bp 2025-01-31 10:03:34,258 DEBUG chr14:71246751-74353251: Successfully fit background model for 2,839,236 bp. Use segment r for 0 bp 2025-01-31 10:03:34,863 DEBUG chr14:74353251-80121251: Successfully fit background model for 5,473,021 bp. Use segment r for 0 bp 2025-01-31 10:03:35,098 DEBUG chr8:111850751-116865751: Successfully fit background model for 4,543,637 bp. Use segment r for 287,237 bp 2025-01-31 10:03:35,349 DEBUG chr8:116865751-119394251: Successfully fit background model for 2,454,622 bp. Use segment r for 0 bp 2025-01-31 10:03:35,441 DEBUG chr14:80121251-86056751: Successfully fit background model for 5,312,684 bp. Use segment r for 0 bp 2025-01-31 10:03:35,600 DEBUG chr14:86056751-87569251: Successfully fit background model for 1,407,762 bp. Use segment r for 0 bp 2025-01-31 10:03:35,828 DEBUG chr8:119394251-124338751: Successfully fit background model for 4,727,499 bp. Use segment r for 0 bp 2025-01-31 10:03:36,327 DEBUG chr8:124338751-129401213: Successfully fit background model for 4,695,416 bp. Use segment r for 0 bp 2025-01-31 10:03:36,534 DEBUG chr14:87569251-95380751: Successfully fit background model for 7,043,833 bp. Use segment r for 0 bp 2025-01-31 10:03:37,865 DEBUG chr14:95380751-106573251: Successfully fit background model for 10,305,271 bp. Use segment r for 0 bp 2025-01-31 10:03:38,479 DEBUG chr14:106573251-112584251: Successfully fit background model for 5,444,685 bp. Use segment r for 0 bp 2025-01-31 10:03:39,346 DEBUG chr14:112584251-121251751: Successfully fit background model for 7,969,310 bp. Use segment r for 0 bp 2025-01-31 10:03:39,440 DEBUG chr14:121251751-121994751: Successfully fit background model for 730,333 bp. Use segment r for 0 bp 2025-01-31 10:03:39,750 DEBUG chr14:121994751-124902244: Successfully fit background model for 2,432,947 bp. Use segment r for 0 bp 2025-01-31 10:03:44,328 DEBUG chr9:3002500-13293751: Successfully fit background model for 9,009,384 bp. Use segment r for 0 bp 2025-01-31 10:03:44,563 DEBUG chr9:13293751-15460751: Successfully fit background model for 1,980,285 bp. Use segment r for 0 bp 2025-01-31 10:03:45,320 DEBUG chr9:15460751-20476251: Successfully fit background model for 4,409,443 bp. Use segment r for 0 bp 2025-01-31 10:03:45,543 DEBUG chr9:20476251-22306751: Successfully fit background model for 1,759,545 bp. Use segment r for 0 bp 2025-01-31 10:03:46,127 DEBUG chr9:22306751-25723251: Successfully fit background model for 3,144,925 bp. Use segment r for 0 bp 2025-01-31 10:03:46,771 DEBUG chr9:25723251-31118251: Successfully fit background model for 5,119,755 bp. Use segment r for 0 bp 2025-01-31 10:03:47,641 DEBUG chr9:31118251-37796751: Successfully fit background model for 6,196,005 bp. Use segment r for 0 bp 2025-01-31 10:03:47,997 DEBUG chr9:37796751-40757251: Successfully fit background model for 2,670,729 bp. Use segment r for 0 bp 2025-01-31 10:03:48,025 DEBUG chr9:40757251-40819251: Successfully fit background model for 58,615 bp. Use segment r for 0 bp 2025-01-31 10:03:48,297 DEBUG chr9:40819251-43197501: Successfully fit background model for 2,331,135 bp. Use segment r for 0 bp 2025-01-31 10:03:48,565 DEBUG chr9:43197501-45782251: Successfully fit background model for 2,533,877 bp. Use segment r for 0 bp 2025-01-31 10:03:52,471 DEBUG chr9:45782251-54498751: Successfully fit background model for 8,313,699 bp. Use segment r for 0 bp 2025-01-31 10:03:56,495 DEBUG chr9:54498751-66881751: Successfully fit background model for 11,988,267 bp. Use segment r for 0 bp 2025-01-31 10:03:58,593 DEBUG chr9:66881751-80947751: Successfully fit background model for 13,207,831 bp. Use segment r for 0 bp 2025-01-31 10:03:59,661 DEBUG chr9:80947751-90447251: Successfully fit background model for 8,234,545 bp. Use segment r for 0 bp 2025-01-31 10:03:59,988 DEBUG chr9:90447251-93764751: Successfully fit background model for 2,950,431 bp. Use segment r for 0 bp 2025-01-31 10:04:01,461 DEBUG chr9:93764751-106145251: Successfully fit background model for 11,796,739 bp. Use segment r for 0 bp 2025-01-31 10:04:01,738 DEBUG chr9:106145251-108968751: Successfully fit background model for 2,667,140 bp. Use segment r for 0 bp 2025-01-31 10:04:01,968 DEBUG chr9:108968751-111239751: Successfully fit background model for 2,051,860 bp. Use segment r for 0 bp 2025-01-31 10:04:02,788 DEBUG chr9:111239751-119321251: Successfully fit background model for 7,627,523 bp. Use segment r for 0 bp 2025-01-31 10:04:03,291 DEBUG chr9:119321251-124595110: Successfully fit background model for 4,731,153 bp. Use segment r for 0 bp 2025-01-31 10:04:28,044 DEBUG chr11:3100500-3203251: Successfully fit background model for 75,714 bp. Use segment r for 0 bp 2025-01-31 10:04:28,392 DEBUG chr11:3203251-6723251: Successfully fit background model for 3,385,244 bp. Use segment r for 0 bp 2025-01-31 10:04:28,988 DEBUG chr11:6723251-12674751: Successfully fit background model for 5,344,758 bp. Use segment r for 0 bp 2025-01-31 10:04:29,294 DEBUG chr11:12674751-16064751: Successfully fit background model for 2,994,206 bp. Use segment r for 0 bp 2025-01-31 10:04:29,532 DEBUG chr11:16064751-18686751: Successfully fit background model for 2,369,386 bp. Use segment r for 0 bp 2025-01-31 10:04:30,125 DEBUG chr11:18686751-24454501: Successfully fit background model for 5,447,135 bp. Use segment r for 0 bp 2025-01-31 10:04:30,505 DEBUG chr11:24454501-28678001: Successfully fit background model for 3,778,410 bp. Use segment r for 0 bp 2025-01-31 10:04:31,255 DEBUG chr11:28678001-36520251: Successfully fit background model for 7,298,561 bp. Use segment r for 0 bp 2025-01-31 10:04:31,603 DEBUG chr11:36520251-40356751: Successfully fit background model for 3,626,374 bp. Use segment r for 0 bp 2025-01-31 10:04:32,399 DEBUG chr11:40356751-48773251: Successfully fit background model for 7,740,112 bp. Use segment r for 0 bp 2025-01-31 10:04:32,423 DEBUG chr11:48773251-48874251: Successfully fit background model for 98,033 bp. Use segment r for 0 bp 2025-01-31 10:04:33,493 DEBUG chr11:48874251-58301251: Successfully fit background model for 8,865,551 bp. Use segment r for 0 bp 2025-01-31 10:04:33,732 DEBUG chr11:58301251-60772251: Successfully fit background model for 2,288,130 bp. Use segment r for 0 bp 2025-01-31 10:04:34,564 DEBUG chr11:60772251-68965751: Successfully fit background model for 7,921,386 bp. Use segment r for 0 bp 2025-01-31 10:04:34,594 DEBUG chr11:68965751-69127751: Successfully fit background model for 159,568 bp. Use segment r for 0 bp 2025-01-31 10:04:34,746 DEBUG chr11:69127751-70704251: Successfully fit background model for 1,539,027 bp. Use segment r for 0 bp 2025-01-31 10:04:34,990 DEBUG chr11:70704251-73293251: Successfully fit background model for 2,448,856 bp. Use segment r for 0 bp 2025-01-31 10:04:35,063 DEBUG chr11:73293251-73995501: Successfully fit background model for 584,933 bp. Use segment r for 0 bp 2025-01-31 10:04:35,144 DEBUG chr11:73995501-74827751: Successfully fit background model for 753,526 bp. Use segment r for 0 bp 2025-01-31 10:04:35,160 DEBUG chr11:74827751-74898751: Successfully fit background model for 63,292 bp. Use segment r for 0 bp 2025-01-31 10:04:35,609 DEBUG chr11:74898751-79626251: Successfully fit background model for 4,601,697 bp. Use segment r for 0 bp 2025-01-31 10:04:36,038 DEBUG chr13:3000500-21157751: Successfully fit background model for 15,924,182 bp. Use segment r for 0 bp 2025-01-31 10:04:36,117 DEBUG chr13:21157751-21709751: Successfully fit background model for 514,386 bp. Use segment r for 0 bp 2025-01-31 10:04:36,158 DEBUG chr13:21709751-22058751: Successfully fit background model for 293,397 bp. Use segment r for 0 bp 2025-01-31 10:04:36,273 DEBUG chr13:22058751-23284751: Successfully fit background model for 919,565 bp. Use segment r for 0 bp 2025-01-31 10:04:36,325 DEBUG chr13:23284751-23766251: Successfully fit background model for 446,443 bp. Use segment r for 0 bp 2025-01-31 10:04:36,498 DEBUG chr13:23766251-25420251: Successfully fit background model for 1,549,093 bp. Use segment r for 0 bp 2025-01-31 10:04:36,751 DEBUG chr13:25420251-28047251: Successfully fit background model for 2,356,966 bp. Use segment r for 0 bp 2025-01-31 10:04:36,799 DEBUG chr11:79626251-90862251: Successfully fit background model for 10,795,391 bp. Use segment r for 0 bp 2025-01-31 10:04:37,044 DEBUG chr11:90862251-93245251: Successfully fit background model for 2,193,267 bp. Use segment r for 0 bp 2025-01-31 10:04:37,133 DEBUG chr11:93245251-94113751: Successfully fit background model for 825,135 bp. Use segment r for 0 bp 2025-01-31 10:04:38,454 DEBUG chr13:28047251-43132751: Successfully fit background model for 13,983,386 bp. Use segment r for 0 bp 2025-01-31 10:04:38,506 DEBUG chr11:94113751-106971251: Successfully fit background model for 12,443,354 bp. Use segment r for 0 bp 2025-01-31 10:04:38,853 DEBUG chr11:106971251-110637751: Successfully fit background model for 3,539,360 bp. Use segment r for 0 bp 2025-01-31 10:04:39,080 DEBUG chr13:43132751-49308251: Successfully fit background model for 6,005,773 bp. Use segment r for 0 bp 2025-01-31 10:04:39,268 DEBUG chr11:110637751-115223751: Successfully fit background model for 4,404,853 bp. Use segment r for 0 bp 2025-01-31 10:04:39,541 DEBUG chr13:49308251-54439751: Successfully fit background model for 4,525,405 bp. Use segment r for 0 bp 2025-01-31 10:04:39,669 DEBUG chr13:54439751-55660251: Successfully fit background model for 1,177,628 bp. Use segment r for 0 bp 2025-01-31 10:04:39,900 DEBUG chr11:115223751-122082543: Successfully fit background model for 6,544,746 bp. Use segment r for 0 bp 2025-01-31 10:04:39,911 DEBUG chr13:55660251-58005751: Successfully fit background model for 2,290,858 bp. Use segment r for 0 bp 2025-01-31 10:04:40,219 DEBUG chr13:58005751-61258251: Successfully fit background model for 3,055,885 bp. Use segment r for 0 bp 2025-01-31 10:04:40,495 DEBUG chr13:61258251-63155001: Successfully fit background model for 1,427,043 bp. Use segment r for 25,664 bp 2025-01-31 10:04:40,648 DEBUG chr12:3000500-5582251: Successfully fit background model for 2,377,495 bp. Use segment r for 0 bp 2025-01-31 10:04:40,716 DEBUG chr13:63155001-65280751: Successfully fit background model for 1,970,058 bp. Use segment r for 0 bp 2025-01-31 10:04:40,755 DEBUG chr12:5582251-6609751: Successfully fit background model for 917,959 bp. Use segment r for 0 bp 2025-01-31 10:04:41,922 DEBUG chr13:65280751-73251251: Successfully fit background model for 5,987,443 bp. Use segment r for 7,171 bp 2025-01-31 10:04:42,002 DEBUG chr13:73251251-73928251: Successfully fit background model for 664,845 bp. Use segment r for 0 bp 2025-01-31 10:04:42,431 DEBUG chr13:73928251-78212751: Successfully fit background model for 3,823,243 bp. Use segment r for 0 bp 2025-01-31 10:04:42,698 DEBUG chr13:78212751-80862251: Successfully fit background model for 2,377,481 bp. Use segment r for 0 bp 2025-01-31 10:04:42,783 DEBUG chr13:80862251-81632751: Successfully fit background model for 728,233 bp. Use segment r for 0 bp 2025-01-31 10:04:42,804 DEBUG chr13:81632751-81784751: Successfully fit background model for 142,354 bp. Use segment r for 0 bp 2025-01-31 10:04:43,014 DEBUG chr13:81784751-83686251: Successfully fit background model for 1,749,112 bp. Use segment r for 0 bp 2025-01-31 10:04:43,026 DEBUG chr13:83686251-83740251: Successfully fit background model for 46,790 bp. Use segment r for 0 bp 2025-01-31 10:04:43,724 DEBUG chr13:83740251-90885251: Successfully fit background model for 6,383,031 bp. Use segment r for 0 bp 2025-01-31 10:04:43,732 DEBUG chr12:6609751-31912251: Successfully fit background model for 19,617,132 bp. Use segment r for 0 bp 2025-01-31 10:04:43,894 DEBUG chr12:31912251-33197251: Successfully fit background model for 1,202,975 bp. Use segment r for 0 bp 2025-01-31 10:04:44,867 DEBUG chr13:90885251-101691751: Successfully fit background model for 10,160,849 bp. Use segment r for 0 bp 2025-01-31 10:04:45,850 DEBUG chr13:101691751-111679251: Successfully fit background model for 9,276,682 bp. Use segment r for 0 bp 2025-01-31 10:04:45,968 DEBUG chr13:111679251-112769751: Successfully fit background model for 1,054,072 bp. Use segment r for 0 bp 2025-01-31 10:04:46,239 DEBUG chr13:112769751-115372251: Successfully fit background model for 2,464,327 bp. Use segment r for 0 bp 2025-01-31 10:04:46,637 DEBUG chr13:115372251-119426751: Successfully fit background model for 3,704,565 bp. Use segment r for 0 bp 2025-01-31 10:04:46,743 DEBUG chr13:119426751-120421639: Successfully fit background model for 402,946 bp. Use segment r for 0 bp 2025-01-31 10:04:47,092 DEBUG chr12:33197251-51690251: Successfully fit background model for 16,613,484 bp. Use segment r for 136,806 bp 2025-01-31 10:04:47,449 DEBUG chr12:51690251-55299251: Successfully fit background model for 3,217,468 bp. Use segment r for 0 bp 2025-01-31 10:04:47,962 DEBUG chr12:55299251-60590751: Successfully fit background model for 4,797,294 bp. Use segment r for 0 bp 2025-01-31 10:04:48,295 DEBUG chr12:60590751-63971251: Successfully fit background model for 2,969,773 bp. Use segment r for 0 bp 2025-01-31 10:04:48,837 DEBUG chr12:63971251-69151751: Successfully fit background model for 4,675,160 bp. Use segment r for 0 bp 2025-01-31 10:04:50,413 DEBUG chr12:69151751-83292751: Successfully fit background model for 13,381,236 bp. Use segment r for 0 bp 2025-01-31 10:04:50,944 DEBUG chr12:83292751-87193251: Successfully fit background model for 3,803,877 bp. Use segment r for 0 bp 2025-01-31 10:04:51,047 DEBUG chr15:3050500-5097251: Successfully fit background model for 1,741,917 bp. Use segment r for 0 bp 2025-01-31 10:04:51,528 DEBUG chr15:5097251-8072251: Successfully fit background model for 2,716,676 bp. Use segment r for 0 bp 2025-01-31 10:04:51,780 DEBUG chr12:87193251-92602501: Successfully fit background model for 4,621,516 bp. Use segment r for 0 bp 2025-01-31 10:04:52,210 DEBUG chr15:8072251-13588251: Successfully fit background model for 5,113,242 bp. Use segment r for 0 bp 2025-01-31 10:04:52,377 DEBUG chr12:92602501-97042251: Successfully fit background model for 3,982,153 bp. Use segment r for 0 bp 2025-01-31 10:04:52,683 DEBUG chr12:97042251-99256751: Successfully fit background model for 2,056,496 bp. Use segment r for 0 bp 2025-01-31 10:04:53,476 DEBUG chr12:99256751-105947251: Successfully fit background model for 6,285,848 bp. Use segment r for 0 bp 2025-01-31 10:04:53,498 DEBUG chr15:13588251-23161751: Successfully fit background model for 8,538,383 bp. Use segment r for 0 bp 2025-01-31 10:04:53,772 DEBUG chr15:23161751-25174751: Successfully fit background model for 1,772,740 bp. Use segment r for 0 bp 2025-01-31 10:04:53,974 DEBUG chr12:105947251-110376751: Successfully fit background model for 4,287,944 bp. Use segment r for 0 bp 2025-01-31 10:04:54,164 DEBUG chr15:25174751-28451751: Successfully fit background model for 3,090,506 bp. Use segment r for 0 bp 2025-01-31 10:04:54,334 DEBUG chr12:110376751-113050751: Successfully fit background model for 2,601,558 bp. Use segment r for 0 bp 2025-01-31 10:04:54,489 DEBUG chr15:28451751-31043251: Successfully fit background model for 2,327,930 bp. Use segment r for 0 bp 2025-01-31 10:04:54,491 DEBUG chr16:3092500-6057751: Successfully fit background model for 2,511,633 bp. Use segment r for 0 bp 2025-01-31 10:04:54,582 DEBUG chr15:31043251-31710251: Successfully fit background model for 621,031 bp. Use segment r for 0 bp 2025-01-31 10:04:54,675 DEBUG chr16:6057751-7831251: Successfully fit background model for 1,714,088 bp. Use segment r for 0 bp 2025-01-31 10:04:54,845 DEBUG chr15:31710251-33807751: Successfully fit background model for 1,863,844 bp. Use segment r for 0 bp 2025-01-31 10:04:54,882 DEBUG chr12:113050751-118298751: Successfully fit background model for 4,604,424 bp. Use segment r for 0 bp 2025-01-31 10:04:54,897 DEBUG chr12:118298751-118349751: Successfully fit background model for 45,148 bp. Use segment r for 0 bp 2025-01-31 10:04:54,941 DEBUG chr16:7831251-10411251: Successfully fit background model for 2,402,814 bp. Use segment r for 0 bp 2025-01-31 10:04:55,095 DEBUG chr12:118349751-120129022: Successfully fit background model for 1,492,292 bp. Use segment r for 0 bp 2025-01-31 10:04:55,331 DEBUG chr16:10411251-14545251: Successfully fit background model for 3,911,931 bp. Use segment r for 0 bp 2025-01-31 10:04:55,383 DEBUG chr15:33807751-39114251: Successfully fit background model for 4,802,413 bp. Use segment r for 0 bp 2025-01-31 10:04:55,575 DEBUG chr16:14545251-17121251: Successfully fit background model for 2,254,475 bp. Use segment r for 0 bp 2025-01-31 10:04:55,762 DEBUG chr16:17121251-19015251: Successfully fit background model for 1,822,138 bp. Use segment r for 0 bp 2025-01-31 10:04:55,839 DEBUG chr16:19015251-19728751: Successfully fit background model for 563,275 bp. Use segment r for 0 bp 2025-01-31 10:04:55,971 DEBUG chr15:39114251-45157251: Successfully fit background model for 5,530,744 bp. Use segment r for 0 bp 2025-01-31 10:04:56,189 DEBUG chr16:19728751-23366751: Successfully fit background model for 3,404,077 bp. Use segment r for 0 bp 2025-01-31 10:04:56,440 DEBUG chr15:45157251-50179251: Successfully fit background model for 4,499,799 bp. Use segment r for 0 bp 2025-01-31 10:04:56,594 DEBUG chr16:23366751-27660751: Successfully fit background model for 4,040,621 bp. Use segment r for 0 bp 2025-01-31 10:04:57,048 DEBUG chr16:27660751-32419251: Successfully fit background model for 4,503,566 bp. Use segment r for 0 bp 2025-01-31 10:04:57,126 DEBUG chr15:50179251-57128251: Successfully fit background model for 6,351,642 bp. Use segment r for 0 bp 2025-01-31 10:04:57,490 DEBUG chr15:57128251-60036751: Successfully fit background model for 2,773,851 bp. Use segment r for 0 bp 2025-01-31 10:04:57,897 DEBUG chr16:32419251-39144751: Successfully fit background model for 6,429,092 bp. Use segment r for 0 bp 2025-01-31 10:04:58,582 DEBUG chr15:60036751-68549251: Successfully fit background model for 7,744,865 bp. Use segment r for 0 bp 2025-01-31 10:04:58,997 DEBUG chr15:68549251-73052251: Successfully fit background model for 4,156,068 bp. Use segment r for 0 bp 2025-01-31 10:04:59,263 DEBUG chr15:73052251-75882751: Successfully fit background model for 2,653,705 bp. Use segment r for 0 bp 2025-01-31 10:04:59,893 DEBUG chr15:75882751-82378751: Successfully fit background model for 6,213,341 bp. Use segment r for 0 bp 2025-01-31 10:05:00,466 DEBUG chr15:82378751-88728501: Successfully fit background model for 6,107,847 bp. Use segment r for 0 bp 2025-01-31 10:05:00,559 DEBUG chr15:88728501-89635251: Successfully fit background model for 866,950 bp. Use segment r for 0 bp 2025-01-31 10:05:00,774 DEBUG chr15:89635251-91970251: Successfully fit background model for 2,184,279 bp. Use segment r for 0 bp 2025-01-31 10:05:01,175 DEBUG chr16:39144751-49765251: Successfully fit background model for 9,727,740 bp. Use segment r for 0 bp 2025-01-31 10:05:01,331 DEBUG chr16:49765251-50947251: Successfully fit background model for 1,134,460 bp. Use segment r for 0 bp 2025-01-31 10:05:01,430 DEBUG chr15:91970251-98506751: Successfully fit background model for 6,191,334 bp. Use segment r for 0 bp 2025-01-31 10:05:01,864 DEBUG chr15:98506751-103369251: Successfully fit background model for 4,709,008 bp. Use segment r for 0 bp 2025-01-31 10:05:01,927 DEBUG chr16:50947251-55821251: Successfully fit background model for 4,346,149 bp. Use segment r for 0 bp 2025-01-31 10:05:01,938 DEBUG chr15:103369251-104043685: Successfully fit background model for 427,654 bp. Use segment r for 0 bp 2025-01-31 10:05:02,349 DEBUG chr16:55821251-60625251: Successfully fit background model for 4,284,238 bp. Use segment r for 0 bp 2025-01-31 10:05:02,677 DEBUG chr16:60625251-64182751: Successfully fit background model for 3,166,335 bp. Use segment r for 0 bp 2025-01-31 10:05:05,147 DEBUG chr16:64182751-87412251: Successfully fit background model for 21,107,719 bp. Use segment r for 0 bp 2025-01-31 10:05:05,201 DEBUG chr16:87412251-87617251: Successfully fit background model for 200,235 bp. Use segment r for 0 bp 2025-01-31 10:05:05,417 DEBUG chr16:87617251-89769251: Successfully fit background model for 1,999,659 bp. Use segment r for 0 bp 2025-01-31 10:05:05,947 DEBUG chr16:89769251-94486251: Successfully fit background model for 4,572,960 bp. Use segment r for 0 bp 2025-01-31 10:05:06,496 DEBUG chr16:94486251-98207768: Successfully fit background model for 3,464,481 bp. Use segment r for 0 bp 2025-01-31 10:05:18,179 DEBUG chr17:3000000-15913501: Successfully fit background model for 10,888,055 bp. Use segment r for 0 bp 2025-01-31 10:05:18,386 DEBUG chr17:15913501-18002751: Successfully fit background model for 1,716,856 bp. Use segment r for 0 bp 2025-01-31 10:05:18,634 DEBUG chr17:18002751-20526251: Successfully fit background model for 2,254,105 bp. Use segment r for 0 bp 2025-01-31 10:05:18,914 DEBUG chr17:20526251-23531751: Successfully fit background model for 2,304,030 bp. Use segment r for 0 bp 2025-01-31 10:05:19,495 DEBUG chr17:23531751-29481251: Successfully fit background model for 5,759,628 bp. Use segment r for 0 bp 2025-01-31 10:05:19,883 DEBUG chr17:29481251-33758751: Successfully fit background model for 4,002,659 bp. Use segment r for 0 bp 2025-01-31 10:05:20,201 DEBUG chr17:33758751-37031251: Successfully fit background model for 2,939,147 bp. Use segment r for 0 bp 2025-01-31 10:05:20,777 DEBUG chr17:37031251-42605251: Successfully fit background model for 4,746,974 bp. Use segment r for 0 bp 2025-01-31 10:05:21,048 DEBUG chr17:42605251-45454251: Successfully fit background model for 2,723,970 bp. Use segment r for 0 bp 2025-01-31 10:05:21,402 DEBUG chr17:45454251-49159751: Successfully fit background model for 3,596,462 bp. Use segment r for 0 bp 2025-01-31 10:05:21,565 DEBUG chr17:49159751-50910251: Successfully fit background model for 1,698,618 bp. Use segment r for 0 bp 2025-01-31 10:05:22,050 DEBUG chr17:50910251-55930251: Successfully fit background model for 4,442,017 bp. Use segment r for 0 bp 2025-01-31 10:05:22,209 DEBUG chr17:55930251-57361501: Successfully fit background model for 1,401,617 bp. Use segment r for 0 bp 2025-01-31 10:05:22,563 DEBUG chr17:57361501-61126751: Successfully fit background model for 3,343,738 bp. Use segment r for 0 bp 2025-01-31 10:05:24,251 DEBUG chr17:61126751-76095251: Successfully fit background model for 14,036,635 bp. Use segment r for 0 bp 2025-01-31 10:05:24,409 DEBUG chr17:76095251-77631751: Successfully fit background model for 1,423,417 bp. Use segment r for 0 bp 2025-01-31 10:05:25,308 DEBUG chr17:77631751-86149751: Successfully fit background model for 8,051,046 bp. Use segment r for 0 bp 2025-01-31 10:05:25,594 DEBUG chr17:86149751-89177751: Successfully fit background model for 2,910,656 bp. Use segment r for 0 bp 2025-01-31 10:05:26,135 DEBUG chr17:89177751-94987271: Successfully fit background model for 5,164,266 bp. Use segment r for 0 bp 2025-01-31 10:05:47,836 DEBUG chr18:3000500-16844751: Successfully fit background model for 12,596,518 bp. Use segment r for 0 bp 2025-01-31 10:05:48,002 DEBUG chr18:16844751-18454251: Successfully fit background model for 1,413,641 bp. Use segment r for 0 bp 2025-01-31 10:05:48,879 DEBUG chr18:18454251-26724751: Successfully fit background model for 7,616,122 bp. Use segment r for 0 bp 2025-01-31 10:05:49,311 DEBUG chr18:26724751-31609251: Successfully fit background model for 4,496,914 bp. Use segment r for 0 bp 2025-01-31 10:05:49,571 DEBUG chr18:31609251-34329251: Successfully fit background model for 2,518,931 bp. Use segment r for 0 bp 2025-01-31 10:05:49,796 DEBUG chr18:34329251-36804251: Successfully fit background model for 2,418,057 bp. Use segment r for 0 bp 2025-01-31 10:05:49,897 DEBUG chr18:36804251-37806251: Successfully fit background model for 870,867 bp. Use segment r for 0 bp 2025-01-31 10:05:49,945 DEBUG chr18:37806251-38239251: Successfully fit background model for 427,271 bp. Use segment r for 0 bp 2025-01-31 10:05:52,501 DEBUG chr18:38239251-60463251: Successfully fit background model for 20,596,495 bp. Use segment r for 0 bp 2025-01-31 10:05:52,554 DEBUG chr19:3080000-3258001: Successfully fit background model for 111,657 bp. Use segment r for 0 bp 2025-01-31 10:05:52,650 DEBUG chr18:60463251-61705751: Successfully fit background model for 1,217,853 bp. Use segment r for 0 bp 2025-01-31 10:05:52,961 DEBUG chr19:3258001-7495251: Successfully fit background model for 4,001,356 bp. Use segment r for 0 bp 2025-01-31 10:05:53,085 DEBUG chr19:7495251-8712751: Successfully fit background model for 971,154 bp. Use segment r for 0 bp 2025-01-31 10:05:53,130 DEBUG chr19:8712751-9140251: Successfully fit background model for 415,679 bp. Use segment r for 0 bp 2025-01-31 10:05:53,184 DEBUG chr18:61705751-67194751: Successfully fit background model for 5,242,593 bp. Use segment r for 0 bp 2025-01-31 10:05:53,243 DEBUG chr18:67194751-67641251: Successfully fit background model for 438,603 bp. Use segment r for 0 bp 2025-01-31 10:05:53,345 DEBUG chr19:9140251-10997251: Successfully fit background model for 1,514,403 bp. Use segment r for 0 bp 2025-01-31 10:05:53,804 DEBUG chr19:10997251-15495751: Successfully fit background model for 4,072,137 bp. Use segment r for 0 bp 2025-01-31 10:05:53,856 DEBUG chr18:67641251-73698251: Successfully fit background model for 5,633,684 bp. Use segment r for 0 bp 2025-01-31 10:05:54,126 DEBUG chr19:15495751-18915751: Successfully fit background model for 3,244,650 bp. Use segment r for 0 bp 2025-01-31 10:05:54,261 DEBUG chr18:73698251-78028751: Successfully fit background model for 4,071,449 bp. Use segment r for 0 bp 2025-01-31 10:05:54,269 DEBUG chr19:18915751-20435251: Successfully fit background model for 1,414,262 bp. Use segment r for 0 bp 2025-01-31 10:05:54,775 DEBUG chr19:20435251-25632251: Successfully fit background model for 4,936,610 bp. Use segment r for 0 bp 2025-01-31 10:05:54,936 DEBUG chr19:25632251-27300251: Successfully fit background model for 1,561,312 bp. Use segment r for 0 bp 2025-01-31 10:05:55,024 DEBUG chr18:78028751-85910751: Successfully fit background model for 7,368,325 bp. Use segment r for 0 bp 2025-01-31 10:05:55,459 DEBUG chr18:85910751-90702639: Successfully fit background model for 4,052,862 bp. Use segment r for 0 bp 2025-01-31 10:05:55,466 DEBUG chr19:27300251-33271751: Successfully fit background model for 5,715,728 bp. Use segment r for 0 bp 2025-01-31 10:05:55,685 DEBUG chr19:33271751-35583251: Successfully fit background model for 2,026,623 bp. Use segment r for 0 bp 2025-01-31 10:05:56,281 DEBUG chr19:35583251-41643251: Successfully fit background model for 5,557,419 bp. Use segment r for 0 bp 2025-01-31 10:05:56,763 DEBUG chr19:41643251-47043751: Successfully fit background model for 5,227,266 bp. Use segment r for 0 bp 2025-01-31 10:05:56,934 DEBUG chr19:47043751-48805251: Successfully fit background model for 1,699,810 bp. Use segment r for 0 bp 2025-01-31 10:05:57,205 DEBUG chr19:48805251-51708751: Successfully fit background model for 2,671,412 bp. Use segment r for 0 bp 2025-01-31 10:05:58,253 DEBUG chr19:51708751-61431566: Successfully fit background model for 9,205,259 bp. Use segment r for 0 bp 2025-01-31 10:06:52,077 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:06:52,079 INFO Calculating per-bp p-values 2025-01-31 10:06:52,080 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:06:52,126 DEBUG chr3: Calculating p-values 2025-01-31 10:06:52,126 DEBUG chr1: Calculating p-values 2025-01-31 10:06:52,127 DEBUG chr2: Calculating p-values 2025-01-31 10:06:52,128 DEBUG chr4: Calculating p-values 2025-01-31 10:06:52,129 DEBUG chrX: Calculating p-values 2025-01-31 10:06:52,145 DEBUG chr5: Calculating p-values 2025-01-31 10:07:21,843 DEBUG Saving p-values for chrX 2025-01-31 10:07:26,719 DEBUG Saving p-values for chr3 2025-01-31 10:07:27,756 DEBUG Saving p-values for chr5 2025-01-31 10:07:29,280 DEBUG Saving p-values for chr4 2025-01-31 10:07:35,985 DEBUG Saving p-values for chr2 2025-01-31 10:07:46,013 DEBUG Saving p-values for chr1 2025-01-31 10:07:50,675 DEBUG chr6: Calculating p-values 2025-01-31 10:07:56,106 DEBUG chr7: Calculating p-values 2025-01-31 10:07:56,193 DEBUG chr10: Calculating p-values 2025-01-31 10:07:57,865 DEBUG chr8: Calculating p-values 2025-01-31 10:08:11,771 DEBUG chr14: Calculating p-values 2025-01-31 10:08:23,783 DEBUG Saving p-values for chr6 2025-01-31 10:08:25,167 DEBUG chr9: Calculating p-values 2025-01-31 10:08:25,638 DEBUG Saving p-values for chr10 2025-01-31 10:08:31,080 DEBUG Saving p-values for chr8 2025-01-31 10:08:32,584 DEBUG Saving p-values for chr7 2025-01-31 10:08:36,216 DEBUG Saving p-values for chr14 2025-01-31 10:08:49,513 DEBUG chr11: Calculating p-values 2025-01-31 10:08:51,327 DEBUG chr13: Calculating p-values 2025-01-31 10:08:55,031 DEBUG Saving p-values for chr9 2025-01-31 10:08:55,056 DEBUG chr12: Calculating p-values 2025-01-31 10:08:56,298 DEBUG chr15: Calculating p-values 2025-01-31 10:08:57,784 DEBUG chr16: Calculating p-values 2025-01-31 10:09:18,306 DEBUG Saving p-values for chr12 2025-01-31 10:09:19,749 DEBUG chr17: Calculating p-values 2025-01-31 10:09:21,269 DEBUG Saving p-values for chr13 2025-01-31 10:09:22,676 DEBUG Saving p-values for chr16 2025-01-31 10:09:23,775 DEBUG Saving p-values for chr11 2025-01-31 10:09:25,324 DEBUG Saving p-values for chr15 2025-01-31 10:09:37,337 DEBUG chrY: Calculating p-values 2025-01-31 10:09:39,898 DEBUG chr18: Calculating p-values 2025-01-31 10:09:40,654 DEBUG chr19: Calculating p-values 2025-01-31 10:09:43,377 DEBUG Saving p-values for chr17 2025-01-31 10:09:54,719 DEBUG Saving p-values for chr19 2025-01-31 10:09:55,250 DEBUG Saving p-values for chr18 2025-01-31 10:10:12,350 DEBUG Results of calc_pvals emitted. 2025-01-31 10:10:12,350 INFO Converting threshold values to bigwig 2025-01-31 10:10:12,350 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:10:26,908 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:10:57,748 INFO Converting background quantile values to bigwig 2025-01-31 10:10:57,748 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:11:34,466 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:12:02,203 INFO Calculating per-bp FDRs 2025-01-31 10:12:02,205 DEBUG AG81944: Extracting raw P-values 2025-01-31 10:12:38,758 DEBUG AG81944: Computing FDR 2025-01-31 10:12:56,346 DEBUG AG81944: Saving FDRs to parquet 2025-01-31 10:14:00,531 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:14:00,534 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:14:00,534 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:14:04,003 DEBUG chr4: Calling hotspots 2025-01-31 10:14:04,007 DEBUG chrX: Calling hotspots 2025-01-31 10:14:04,465 DEBUG chr5: Calling hotspots 2025-01-31 10:14:04,479 DEBUG chr3: Calling hotspots 2025-01-31 10:14:04,638 DEBUG chr2: Calling hotspots 2025-01-31 10:14:04,800 DEBUG chr1: Calling hotspots 2025-01-31 10:14:12,285 DEBUG chr4: 4133 hotspots called 2025-01-31 10:14:12,546 DEBUG chr5: 3993 hotspots called 2025-01-31 10:14:13,255 DEBUG chrX: 2116 hotspots called 2025-01-31 10:14:13,516 DEBUG chr3: 3160 hotspots called 2025-01-31 10:14:14,866 DEBUG chr2: 5106 hotspots called 2025-01-31 10:14:15,209 DEBUG chr1: 4336 hotspots called 2025-01-31 10:14:15,753 DEBUG chr7: Calling hotspots 2025-01-31 10:14:15,806 DEBUG chr6: Calling hotspots 2025-01-31 10:14:15,842 DEBUG chr10: Calling hotspots 2025-01-31 10:14:16,335 DEBUG chr8: Calling hotspots 2025-01-31 10:14:17,065 DEBUG chr14: Calling hotspots 2025-01-31 10:14:17,264 DEBUG chr9: Calling hotspots 2025-01-31 10:14:21,066 DEBUG chr6: 3314 hotspots called 2025-01-31 10:14:21,388 DEBUG chr10: 2966 hotspots called 2025-01-31 10:14:21,590 DEBUG chr8: 2984 hotspots called 2025-01-31 10:14:22,472 DEBUG chr14: 2008 hotspots called 2025-01-31 10:14:22,486 DEBUG chr7: 3990 hotspots called 2025-01-31 10:14:22,571 DEBUG chr9: 3559 hotspots called 2025-01-31 10:14:23,656 DEBUG chr11: Calling hotspots 2025-01-31 10:14:24,018 DEBUG chr13: Calling hotspots 2025-01-31 10:14:24,316 DEBUG chr12: Calling hotspots 2025-01-31 10:14:24,530 DEBUG chr16: Calling hotspots 2025-01-31 10:14:24,678 DEBUG chr17: Calling hotspots 2025-01-31 10:14:24,701 DEBUG chr15: Calling hotspots 2025-01-31 10:14:29,485 DEBUG chr16: 2079 hotspots called 2025-01-31 10:14:29,538 DEBUG chr17: 2643 hotspots called 2025-01-31 10:14:29,868 DEBUG chr11: 4840 hotspots called 2025-01-31 10:14:30,155 DEBUG chr13: 2988 hotspots called 2025-01-31 10:14:30,161 DEBUG chr15: 2461 hotspots called 2025-01-31 10:14:30,265 DEBUG chr12: 2396 hotspots called 2025-01-31 10:14:30,701 DEBUG chr19: Calling hotspots 2025-01-31 10:14:30,967 DEBUG chr18: Calling hotspots 2025-01-31 10:14:33,410 DEBUG chr19: 2113 hotspots called 2025-01-31 10:14:34,907 DEBUG chr18: 1706 hotspots called 2025-01-31 10:14:35,323 DEBUG Results of call_hotspots emitted. 2025-01-31 10:14:35,354 INFO There are 62891 hotspots called at FDR=0.05 2025-01-31 10:14:38,379 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:14:38,379 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:14:47,543 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:14:48,420 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:14:48,760 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:14:49,088 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:14:49,144 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:14:51,557 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:14:55,681 DEBUG chr5: 4661 peaks called 2025-01-31 10:14:55,924 DEBUG chr4: 4848 peaks called 2025-01-31 10:14:57,795 DEBUG chrX: 2365 peaks called 2025-01-31 10:14:58,085 DEBUG chr2: 5964 peaks called 2025-01-31 10:14:58,202 DEBUG chr3: 3750 peaks called 2025-01-31 10:15:00,444 DEBUG chr1: 5023 peaks called 2025-01-31 10:15:04,302 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:15:04,408 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:15:05,621 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:15:06,169 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:15:06,316 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:15:07,993 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:15:11,520 DEBUG chr6: 3832 peaks called 2025-01-31 10:15:11,865 DEBUG chr10: 3524 peaks called 2025-01-31 10:15:12,055 DEBUG chr7: 4803 peaks called 2025-01-31 10:15:12,147 DEBUG chr8: 3575 peaks called 2025-01-31 10:15:12,328 DEBUG chr14: 2347 peaks called 2025-01-31 10:15:13,351 DEBUG chr9: 4215 peaks called 2025-01-31 10:15:17,736 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:15:18,289 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:15:18,557 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:15:18,876 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:15:19,144 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:15:19,197 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:15:25,238 DEBUG chr16: 2438 peaks called 2025-01-31 10:15:25,948 DEBUG chr15: 2932 peaks called 2025-01-31 10:15:26,215 DEBUG chr17: 3230 peaks called 2025-01-31 10:15:26,771 DEBUG chr12: 2755 peaks called 2025-01-31 10:15:27,021 DEBUG chr11: 5858 peaks called 2025-01-31 10:15:27,093 DEBUG chr13: 3578 peaks called 2025-01-31 10:15:28,457 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:15:28,775 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:15:31,814 DEBUG chr19: 2575 peaks called 2025-01-31 10:15:34,170 DEBUG chr18: 1990 peaks called 2025-01-31 10:15:35,049 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:15:35,086 INFO There are 74263 peaks called at FDR=0.05 2025-01-31 10:15:36,544 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:15:36,545 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:15:40,367 DEBUG chr5: Calling hotspots 2025-01-31 10:15:40,409 DEBUG chr3: Calling hotspots 2025-01-31 10:15:40,525 DEBUG chr4: Calling hotspots 2025-01-31 10:15:40,902 DEBUG chrX: Calling hotspots 2025-01-31 10:15:41,248 DEBUG chr2: Calling hotspots 2025-01-31 10:15:41,391 DEBUG chr1: Calling hotspots 2025-01-31 10:15:48,989 DEBUG chr5: 3318 hotspots called 2025-01-31 10:15:49,514 DEBUG chr3: 2625 hotspots called 2025-01-31 10:15:49,577 DEBUG chr4: 3457 hotspots called 2025-01-31 10:15:50,892 DEBUG chrX: 1586 hotspots called 2025-01-31 10:15:51,590 DEBUG chr2: 4267 hotspots called 2025-01-31 10:15:52,131 DEBUG chr1: 3462 hotspots called 2025-01-31 10:15:52,191 DEBUG chr6: Calling hotspots 2025-01-31 10:15:52,535 DEBUG chr10: Calling hotspots 2025-01-31 10:15:52,755 DEBUG chr7: Calling hotspots 2025-01-31 10:15:53,677 DEBUG chr8: Calling hotspots 2025-01-31 10:15:54,397 DEBUG chr14: Calling hotspots 2025-01-31 10:15:55,037 DEBUG chr9: Calling hotspots 2025-01-31 10:15:56,394 DEBUG chr10: 2489 hotspots called 2025-01-31 10:15:56,571 DEBUG chr6: 2690 hotspots called 2025-01-31 10:15:57,505 DEBUG chr7: 3407 hotspots called 2025-01-31 10:15:57,927 DEBUG chr8: 2512 hotspots called 2025-01-31 10:15:58,449 DEBUG chr14: 1627 hotspots called 2025-01-31 10:15:58,910 DEBUG chr11: Calling hotspots 2025-01-31 10:15:59,177 DEBUG chr13: Calling hotspots 2025-01-31 10:15:59,727 DEBUG chr9: 2945 hotspots called 2025-01-31 10:16:00,004 DEBUG chr12: Calling hotspots 2025-01-31 10:16:00,031 DEBUG chr15: Calling hotspots 2025-01-31 10:16:00,278 DEBUG chr16: Calling hotspots 2025-01-31 10:16:01,516 DEBUG chr17: Calling hotspots 2025-01-31 10:16:08,256 DEBUG chr15: 2054 hotspots called 2025-01-31 10:16:08,342 DEBUG chr16: 1671 hotspots called 2025-01-31 10:16:08,787 DEBUG chr13: 2441 hotspots called 2025-01-31 10:16:08,838 DEBUG chr11: 4154 hotspots called 2025-01-31 10:16:08,915 DEBUG chr17: 2257 hotspots called 2025-01-31 10:16:09,106 DEBUG chr12: 1928 hotspots called 2025-01-31 10:16:09,697 DEBUG chr19: Calling hotspots 2025-01-31 10:16:09,914 DEBUG chr18: Calling hotspots 2025-01-31 10:16:11,436 DEBUG chr19: 1792 hotspots called 2025-01-31 10:16:12,175 DEBUG chr18: 1370 hotspots called 2025-01-31 10:16:12,566 DEBUG Results of call_hotspots emitted. 2025-01-31 10:16:12,603 INFO There are 52052 hotspots called at FDR=0.01 2025-01-31 10:16:15,101 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:16:15,101 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:16:25,308 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:16:25,804 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:16:25,864 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:16:26,403 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:16:27,692 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:16:27,822 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:16:35,916 DEBUG chr3: 3156 peaks called 2025-01-31 10:16:36,179 DEBUG chr5: 3881 peaks called 2025-01-31 10:16:37,277 DEBUG chr4: 4039 peaks called 2025-01-31 10:16:37,861 DEBUG chrX: 1808 peaks called 2025-01-31 10:16:40,853 DEBUG chr1: 4088 peaks called 2025-01-31 10:16:42,021 DEBUG chr2: 4998 peaks called 2025-01-31 10:16:45,210 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:16:45,772 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:16:45,976 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:16:47,117 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:16:50,741 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:16:52,370 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:17:01,542 DEBUG chr10: 2960 peaks called 2025-01-31 10:17:02,635 DEBUG chr8: 3030 peaks called 2025-01-31 10:17:04,932 DEBUG chr6: 3144 peaks called 2025-01-31 10:17:05,138 DEBUG chr9: 3496 peaks called 2025-01-31 10:17:05,182 DEBUG chr14: 1918 peaks called 2025-01-31 10:17:05,550 DEBUG chr7: 4078 peaks called 2025-01-31 10:17:08,807 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:17:10,397 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:17:11,417 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:17:12,141 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:17:12,143 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:17:12,362 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:17:22,907 DEBUG chr17: 2757 peaks called 2025-01-31 10:17:22,995 DEBUG chr11: 4981 peaks called 2025-01-31 10:17:24,147 DEBUG chr16: 1977 peaks called 2025-01-31 10:17:24,559 DEBUG chr13: 2958 peaks called 2025-01-31 10:17:25,126 DEBUG chr15: 2431 peaks called 2025-01-31 10:17:26,495 DEBUG chr12: 2274 peaks called 2025-01-31 10:17:27,237 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:17:27,523 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:17:31,958 DEBUG chr19: 2161 peaks called 2025-01-31 10:17:34,101 DEBUG chr18: 1607 peaks called 2025-01-31 10:17:36,094 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:17:36,127 INFO There are 61742 peaks called at FDR=0.01 2025-01-31 10:17:37,327 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:17:37,327 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:17:41,129 DEBUG chr4: Calling hotspots 2025-01-31 10:17:41,364 DEBUG chr5: Calling hotspots 2025-01-31 10:17:41,413 DEBUG chr3: Calling hotspots 2025-01-31 10:17:41,765 DEBUG chrX: Calling hotspots 2025-01-31 10:17:42,038 DEBUG chr2: Calling hotspots 2025-01-31 10:17:42,187 DEBUG chr1: Calling hotspots 2025-01-31 10:17:56,047 DEBUG chr5: 2824 hotspots called 2025-01-31 10:17:56,293 DEBUG chr4: 2898 hotspots called 2025-01-31 10:17:56,775 DEBUG chr3: 2240 hotspots called 2025-01-31 10:17:58,327 DEBUG chrX: 1246 hotspots called 2025-01-31 10:17:59,319 DEBUG chr6: Calling hotspots 2025-01-31 10:17:59,477 DEBUG chr2: 3604 hotspots called 2025-01-31 10:17:59,770 DEBUG chr10: Calling hotspots 2025-01-31 10:17:59,786 DEBUG chr7: Calling hotspots 2025-01-31 10:18:00,588 DEBUG chr1: 2885 hotspots called 2025-01-31 10:18:01,466 DEBUG chr8: Calling hotspots 2025-01-31 10:18:02,683 DEBUG chr14: Calling hotspots 2025-01-31 10:18:02,915 DEBUG chr9: Calling hotspots 2025-01-31 10:18:05,419 DEBUG chr6: 2266 hotspots called 2025-01-31 10:18:05,882 DEBUG chr10: 2109 hotspots called 2025-01-31 10:18:06,719 DEBUG chr7: 2927 hotspots called 2025-01-31 10:18:07,051 DEBUG chr8: 2212 hotspots called 2025-01-31 10:18:08,139 DEBUG chr11: Calling hotspots 2025-01-31 10:18:08,240 DEBUG chr13: Calling hotspots 2025-01-31 10:18:09,002 DEBUG chr14: 1385 hotspots called 2025-01-31 10:18:09,075 DEBUG chr9: 2496 hotspots called 2025-01-31 10:18:09,299 DEBUG chr12: Calling hotspots 2025-01-31 10:18:09,318 DEBUG chr15: Calling hotspots 2025-01-31 10:18:10,994 DEBUG chr16: Calling hotspots 2025-01-31 10:18:11,163 DEBUG chr17: Calling hotspots 2025-01-31 10:18:19,512 DEBUG chr15: 1769 hotspots called 2025-01-31 10:18:19,651 DEBUG chr11: 3554 hotspots called 2025-01-31 10:18:19,696 DEBUG chr13: 2035 hotspots called 2025-01-31 10:18:20,105 DEBUG chr16: 1414 hotspots called 2025-01-31 10:18:20,146 DEBUG chr17: 1977 hotspots called 2025-01-31 10:18:20,268 DEBUG chr12: 1636 hotspots called 2025-01-31 10:18:20,768 DEBUG chr19: Calling hotspots 2025-01-31 10:18:20,910 DEBUG chr18: Calling hotspots 2025-01-31 10:18:22,247 DEBUG chr19: 1550 hotspots called 2025-01-31 10:18:23,028 DEBUG chr18: 1145 hotspots called 2025-01-31 10:18:23,454 DEBUG Results of call_hotspots emitted. 2025-01-31 10:18:23,488 INFO There are 44172 hotspots called at FDR=0.001 2025-01-31 10:18:25,666 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:18:25,666 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:18:37,115 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:18:37,594 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:18:37,789 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:18:38,461 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:18:39,695 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:18:39,862 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:18:47,927 DEBUG chr5: 3266 peaks called 2025-01-31 10:18:48,189 DEBUG chr4: 3345 peaks called 2025-01-31 10:18:48,687 DEBUG chr3: 2667 peaks called 2025-01-31 10:18:48,955 DEBUG chrX: 1441 peaks called 2025-01-31 10:18:50,394 DEBUG chr2: 4184 peaks called 2025-01-31 10:18:51,924 DEBUG chr1: 3403 peaks called 2025-01-31 10:18:56,144 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:18:56,702 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:18:57,910 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:18:58,867 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:18:59,163 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:18:59,795 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:19:09,769 DEBUG chr7: 3472 peaks called 2025-01-31 10:19:10,047 DEBUG chr8: 2597 peaks called 2025-01-31 10:19:10,205 DEBUG chr6: 2611 peaks called 2025-01-31 10:19:10,656 DEBUG chr14: 1626 peaks called 2025-01-31 10:19:11,952 DEBUG chr9: 2914 peaks called 2025-01-31 10:19:12,609 DEBUG chr10: 2472 peaks called 2025-01-31 10:19:16,914 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:19:17,210 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:19:17,264 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:19:17,690 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:19:18,099 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:19:18,670 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:19:29,385 DEBUG chr15: 2058 peaks called 2025-01-31 10:19:29,945 DEBUG chr16: 1670 peaks called 2025-01-31 10:19:30,384 DEBUG chr17: 2359 peaks called 2025-01-31 10:19:31,071 DEBUG chr12: 1899 peaks called 2025-01-31 10:19:31,895 DEBUG chr13: 2466 peaks called 2025-01-31 10:19:33,357 DEBUG chr11: 4212 peaks called 2025-01-31 10:19:33,704 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:19:34,638 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:19:38,770 DEBUG chr19: 1852 peaks called 2025-01-31 10:19:40,380 DEBUG chr18: 1329 peaks called 2025-01-31 10:19:41,175 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:19:41,205 INFO There are 51843 peaks called at FDR=0.001 2025-01-31 10:19:42,208 INFO Saving density 2025-01-31 10:19:42,209 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:20:06,487 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:20:12,602 DEBUG Converting density to bigwig 2025-01-31 10:21:17,518 INFO Program finished