#!/bin/bash
#
#SBATCH --output=/home/jvierstra/proj/footprinting.2019/processed/h.f.heart.left.ventricle-DS44708/logs/%J.out
#SBATCH --mem=32G
#SBATCH --cpus-per-task=1
#SBATCH --partition=queue0

set -e -o pipefail

INPUT_FILES=(`cat /home/jvierstra/proj/footprinting.2019/processed/h.f.heart.left.ventricle-DS44708/slurm.compute_deviation_chunk.params`)
OUTPUT_FILES=("${INPUT_FILES[@]/%/.out}")

sort -k1,1 -k2,2n -S 30G -m ${OUTPUT_FILES[@]} > /home/jvierstra/proj/footprinting.2019/processed/h.f.heart.left.ventricle-DS44708/interval.all.bedgraph