chr1	899449	899450	chr1:899450:G:A	rs116452738	G	A	g	Sox3.mouse_HMG_3	10	1	-	-0.9991728729129932	-0.9991728729129932	GGTGAGTGCCCGTCATC
chr1	899451	899452	chr1:899452:G:C	rs4411087	G	C	g	Sox3.mouse_HMG_3	8	1	-	-0.9991728729129932	-0.5563902042350615	GGTGAGTGCCCGTCATC
chr1	1189438	1189439	chr1:1189439:C:T	rs6694487	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	1218074	1218075	chr1:1218075:G:A	rs77156226	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr1	1272645	1272646	chr1:1272646:C:T	rs149905664	C	T	c	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	1330079	1330080	chr1:1330080:T:C	rs35744813	T	C	t	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	1330124	1330125	chr1:1330125:G:A	rs35946613	G	A	g	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	1401953	1401954	chr1:1401954:G:T	rs1171	G	T	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	1851180	1851181	chr1:1851181:C:T	rs12066667	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr1	1876939	1876940	chr1:1876940:C:A	rs76829720	C	A	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	1951919	1951920	chr1:1951920:A:G	rs2490562	A	G	G	Sox3.mouse_HMG_3	6	1	-	1.095635065079906	-5.512315576460891	CCTGAATGGTATTCTCT
chr1	2284951	2284952	chr1:2284952:A:G	rs6689315	A	G	A	Sox3.mouse_HMG_3	6	1	-	2.9714009843916194	-3.6365496571491787	TATGAATTCTGATCATC
chr1	2636985	2636986	chr1:2636986:T:C	rs4648661	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	3057011	3057012	chr1:3057012:G:A	rs1109251	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	3082503	3082504	chr1:3082504:T:G	rs2981886	T	G	G	Sox3.mouse_HMG_3	9	1	+	5.336213749476961	-0.011351934889348714	GCTGAATGGTGTTCAGA
chr1	3392392	3392393	chr1:3392393:G:C	rs12139767	G	C	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	3638059	3638060	chr1:3638060:G:A	rs2760319	G	A	G	Sox3.mouse_HMG_3	3	1	+	4.369450709386633	-1.4121141781425992	ACTGCATTGCATTCAAA
chr1	3925547	3925548	chr1:3925548:T:C	rs34835780	T	C	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr1	4009583	4009584	chr1:4009584:C:A	rs12028147	C	A	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	4025443	4025444	chr1:4025444:A:G	rs4233266	A	G	A	Sox3.mouse_HMG_3	1	1	+	4.593442520527595	1.4933125840903039	AATGAATTGGAGCCATA
chr1	4025454	4025455	chr1:4025455:C:T	rs138442147	C	T	C	Sox3.mouse_HMG_3	12	1	+	4.593442520527595	10.786296087928363	AATGAATTGGAGCCATA
chr1	4057168	4057169	chr1:4057169:G:A	rs7541137	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	4057177	4057178	chr1:4057178:C:T	rs4654404	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	4091060	4091061	chr1:4091061:A:G	rs115530964	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr1	4091075	4091076	chr1:4091076:T:C	rs57146568	T	C	t	Sox3.mouse_HMG_3	6	1	+	3.774597808939734	-2.833352832601066	GATGCCTGTCAGTCATG
chr1	4150341	4150342	chr1:4150342:G:A	rs6683453	G	A	A	Sox3.mouse_HMG_3	3	1	+	6.080186097809373	0.29862121028014266	TGTGAATGATAATCAGG
chr1	4319897	4319898	chr1:4319898:A:T	rs351598	A	T	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	4397783	4397784	chr1:4397784:T:C	rs10915523	T	C	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	4491998	4491999	chr1:4491999:T:C	rs350189	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	4705527	4705528	chr1:4705528:T:C	rs10915590	T	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	4911564	4911565	chr1:4911565:C:T	rs12034590	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	5209179	5209180	chr1:5209180:A:G	rs10915379	A	G	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr1	5225009	5225010	chr1:5225010:T:C	rs7524460	T	C	C	Sox3.mouse_HMG_3	5	1	-	0.11292937230664912	-6.375905549764216	GGTGAATGGTTTCCAGG
chr1	5279470	5279471	chr1:5279471:A:G	rs66495077	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr1	5280324	5280325	chr1:5280325:G:A	rs12143953	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	5297244	5297245	chr1:5297245:C:T	rs1436792775	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr1	5535802	5535803	chr1:5535803:C:A	rs9439609	C	A	C	Sox3.mouse_HMG_3	7	1	-	1.3771977771268316	0.5271648348967601	CATGCAGGATATTCATC
chr1	5618722	5618723	chr1:5618723:A:G	rs1695615	A	G	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr1	5798368	5798369	chr1:5798369:C:T	rs75883988	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr1	5827115	5827116	chr1:5827116:T:G	rs72854783	T	G	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr1	5838262	5838263	chr1:5838263:T:C	rs11121170	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	5940217	5940218	chr1:5940218:T:C	rs57752624	T	C	T	Sox3.mouse_HMG_3	10	1	-	0.815828952122065	-5.792121689418732	AGACAATGGCATTCATC
chr1	6474870	6474871	chr1:6474871:A:G	rs112653986	A	G	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	6517901	6517902	chr1:6517902:C:T	rs4243832	C	T	c	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	6661173	6661174	chr1:6661174:T:A	rs200451	T	A	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr1	7115797	7115798	chr1:7115798:G:A	rs11120852	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr1	7176749	7176750	chr1:7176750:A:G	rs6680365	A	G	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	7264898	7264899	chr1:7264899:C:A	rs1034453	C	A	A	Sox3.mouse_HMG_3	2	1	-	1.6080779346967833	8.357057896568389	AAGGCATTCTATTCATC
chr1	7502375	7502376	chr1:7502376:G:T	rs1725261	G	T	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	7502427	7502428	chr1:7502428:C:T	rs1725262	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	7587492	7587493	chr1:7587493:G:T	rs115692233	G	T	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	7587497	7587498	chr1:7587498:T:C	rs11120983	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr1	7808356	7808357	chr1:7808357:T:C	rs12566473	T	C	T	Sox3.mouse_HMG_3	0	1	-	3.149082972014863	3.974366873161207	AGTGAATGGCACACATG
chr1	7808375	7808376	chr1:7808376:G:T	rs77434986	G	T	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	7862742	7862743	chr1:7862743:T:G	rs7540360	T	G	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	8028104	8028105	chr1:8028105:A:G	rs74053418	A	G	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	8132034	8132035	chr1:8132035:T:G	rs11121105	T	G	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	8137521	8137522	chr1:8137522:A:G	rs17032209	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	8201361	8201362	chr1:8201362:C:T	rs75646688	C	T	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	8213861	8213862	chr1:8213862:T:C	rs395859	T	C	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	8213879	8213880	chr1:8213880:T:C	rs395847	T	C	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	8225011	8225012	chr1:8225012:A:G	rs424160	A	G	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	8225023	8225024	chr1:8225024:T:G	chr1:8225024:T:G	T	G	T	Sox3.mouse_HMG_3	14	1	-	6.936639139547253	0.5546929731203429	GAAGAACGGCATTCATG
chr1	8424468	8424469	chr1:8424469:A:G	rs57310340	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	8684845	8684846	chr1:8684846:T:C	rs75026266	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr1	8701592	8701593	chr1:8701593:C:G	rs145524576	C	G	C	Sox3.mouse_HMG_3	16	1	+	2.866436304219446	4.920292559896747	GATGCATTGCTTTCATC
chr1	8941901	8941902	chr1:8941902:T:A	rs12568902	T	A	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	9038508	9038509	chr1:9038509:G:T	rs191194369	G	T	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr1	9261666	9261667	chr1:9261667:T:C	rs553737297	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	9401961	9401962	chr1:9401962:G:A	rs76569153	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	9732373	9732374	chr1:9732374:T:G	rs76908323	T	G	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	10083491	10083492	chr1:10083492:T:A	rs79980202	T	A	T	Sox3.mouse_HMG_3	0	1	+	1.8973355000337508	1.34097245268716	TAAGAATGCTATCCACA
chr1	10215533	10215534	chr1:10215534:C:T	rs2027330	C	T	t	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	10283842	10283843	chr1:10283843:G:A	rs182912146	G	A	G	Sox3.mouse_HMG_3	13	1	-	13.849881431758426	7.2426208212964065	CATGAATGGCAGTCAAG
chr1	10286695	10286696	chr1:10286696:A:G	rs114991399	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	10515114	10515115	chr1:10515115:C:T	rs191229079	C	T	C	Sox3.mouse_HMG_3	8	1	-	1.2471445598541484	0.6240279126763362	TATGAATTGTGGTGAAG
chr1	10974087	10974088	chr1:10974088:T:C	rs12081176	T	C	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr1	11139091	11139092	chr1:11139092:T:C	rs2275528	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr1	11512101	11512102	chr1:11512102:G:A	rs2745267	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	11651146	11651147	chr1:11651147:C:T	rs9430198	C	T	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	11800059	11800060	chr1:11800060:A:G	rs13306553	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	11800062	11800063	chr1:11800063:T:C	rs11121832	T	C	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr1	11868761	11868762	chr1:11868762:T:C	rs11801879	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr1	11868772	11868773	chr1:11868773:T:C	rs1009591	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	11909048	11909049	chr1:11909049:G:C	rs184412857	G	C	G	Sox3.mouse_HMG_3	11	1	+	0.11836721561167485	-4.531807510194464	TGGGAAGTGCAGTCATG
chr1	11909927	11909928	chr1:11909928:G:A	rs12401459	G	A	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	11909933	11909934	chr1:11909934:C:T	rs4993564	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr1	11913465	11913466	chr1:11913466:A:C	rs34550591	A	C	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr1	11913830	11913831	chr1:11913831:A:G	rs7554547	A	G	G	Sox3.mouse_HMG_3	2	1	-	1.1616689566027614	-5.444210161628169	GGTGAGTGTCAGTCCTG
chr1	11982203	11982204	chr1:11982204:A:G	rs2236055	A	G	G	Sox3.mouse_HMG_3	12	1	-	0.5297670825955929	-5.663086484805174	AGAGGATGCCATTCAAG
chr1	12006266	12006267	chr1:12006267:A:G	rs11579994	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	12249420	12249421	chr1:12249421:A:G	rs79784349	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	12369455	12369456	chr1:12369456:C:T	rs147459426	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	12380923	12380924	chr1:12380924:T:A	rs17037994	T	A	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr1	12380928	12380929	chr1:12380929:A:C	rs77455341	A	C	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	12380929	12380930	chr1:12380930:G:T	rs78353955	G	T	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr1	12558311	12558312	chr1:12558312:C:T	rs144726415	C	T	c	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr1	12615317	12615318	chr1:12615318:T:G	rs1035740714	T	G	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	12623414	12623415	chr1:12623415:T:C	rs3000893	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	12693318	12693319	chr1:12693319:T:C	rs6690766	T	C	T	Sox3.mouse_HMG_3	6	1	+	5.719514312710797	-0.8884363288300006	ATTGAATTGCATTTAAA
chr1	13695468	13695469	chr1:13695469:G:A	rs80095344	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	13704275	13704276	chr1:13704276:A:C	rs1375744533	A	C	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	13733760	13733761	chr1:13733761:C:G	rs1548232	C	G	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr1	13809625	13809626	chr1:13809626:G:A	rs74058414	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr1	13830175	13830176	chr1:13830176:G:A	rs58625143	G	A	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	13830200	13830201	chr1:13830201:G:A	rs61255346	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	13863799	13863800	chr1:13863800:A:T	rs17346826	A	T	.	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr1	13889707	13889708	chr1:13889708:T:C	rs2744652	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.5203971683210966	-0.5797327681161949	CATGGACTGCATTCATT
chr1	13889717	13889718	chr1:13889718:A:G	rs12046889	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr1	13916276	13916277	chr1:13916277:C:T	rs16853148	C	T	T	Sox3.mouse_HMG_3	3	1	-	1.2921313445334799	-4.489433542995751	GGCGAATGTCATTCTTT
chr1	13960586	13960587	chr1:13960587:G:A	chr1:13960587:G:A	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr1	13960608	13960609	chr1:13960609:A:G	rs1299451995	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	14373312	14373313	chr1:14373313:G:A	rs76589709	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr1	14486496	14486497	chr1:14486497:C:T	rs1934489	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	14658861	14658862	chr1:14658862:C:T	rs7512426	C	T	T	Sox3.mouse_HMG_3	11	1	-	2.2949796215954392	-2.355195104210699	TGTGAATTACAGTAAAC
chr1	14683323	14683324	chr1:14683324:T:C	rs1883661	T	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	14811341	14811342	chr1:14811342:A:G	rs74059396	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr1	14849360	14849361	chr1:14849361:A:G	rs56293671	A	G	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	14863373	14863374	chr1:14863374:T:C	rs3765383	T	C	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr1	14863380	14863381	chr1:14863381:G:A	rs3765382	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr1	14875707	14875708	chr1:14875708:C:T	rs4661540	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	14881006	14881007	chr1:14881007:C:G	rs16851000	C	G	A	Sox3.mouse_HMG_3	2	1	+	1.1374470979130462	0.9943462542723738	AACGAATGACAGTCCAG
chr1	14891834	14891835	chr1:14891835:C:T	rs1524160	C	T	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	14929774	14929775	chr1:14929775:C:T	rs74059667	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr1	14929784	14929785	chr1:14929785:A:G	rs111806216	A	G	A	Sox3.mouse_HMG_3	1	1	+	3.3254399552605864	0.22531001882329327	GATGAGTGCCTTTCAAG
chr1	15194086	15194087	chr1:15194087:G:A	rs6692220	G	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	15365043	15365044	chr1:15365044:A:C	rs10803382	A	C	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	15382428	15382429	chr1:15382429:G:C	rs78238837	G	C	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	15534067	15534068	chr1:15534068:T:A	rs6703016	T	A	G	Sox3.mouse_HMG_3	4	1	+	1.1342428345856839	7.741683499064395	CATTTATTATAGTCATG
chr1	15595278	15595279	chr1:15595279:A:C	rs16849152	A	C	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr1	15680895	15680896	chr1:15680896:G:A	rs34206873	G	A	G	Sox3.mouse_HMG_3	3	1	+	2.2817984741056394	-3.4997664134235924	AATGAATGAGCTTCAAT
chr1	15687777	15687778	chr1:15687778:A:T	rs148059685	A	T	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	15950040	15950041	chr1:15950041:A:G	rs11489779	A	G	A	Sox3.mouse_HMG_3	11	1	-	1.7833233881544908	-4.301287437947454	TAGGAATGTCATTGAGA
chr1	15950057	15950058	chr1:15950058:C:T	rs11489780	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr1	16467619	16467620	chr1:16467620:G:C	rs1877623	G	C	.	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	16723458	16723459	chr1:16723459:C:T	rs16854927	C	T	.	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	16767672	16767673	chr1:16767673:A:C	rs4661979	A	C	.	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	17023302	17023303	chr1:17023303:C:T	rs978528	C	T	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	17097637	17097638	chr1:17097638:T:C	rs2244949	T	C	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	17141826	17141827	chr1:17141827:A:C	rs10788658	A	C	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	17141853	17141854	chr1:17141854:C:T	rs12136770	C	T	C	Sox3.mouse_HMG_3	9	1	+	-0.3240379612593445	-0.3164012842675985	GACGGATGGCATTGATG
chr1	17141854	17141855	chr1:17141855:A:G	rs2746481	A	G	G	Sox3.mouse_HMG_3	10	1	+	-0.3240379612593445	-6.931988602800143	GACGGATGGCATTGATG
chr1	17160226	17160227	chr1:17160227:C:T	rs4620585	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr1	17272948	17272949	chr1:17272949:C:T	rs2977293	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr1	17433601	17433602	chr1:17433602:A:G	rs4920607	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	17804427	17804428	chr1:17804428:A:T	rs11203466	A	T	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	17808833	17808834	chr1:17808834:G:A	rs11806878	G	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	17916325	17916326	chr1:17916326:C:G	rs7534142	C	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	17920270	17920271	chr1:17920271:T:G	rs187381930	T	G	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr1	18005097	18005098	chr1:18005098:T:G	rs4433436	T	G	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	18139796	18139797	chr1:18139797:G:A	rs74958053	G	A	A	Sox3.mouse_HMG_3	15	1	-	5.652530448218763	10.36692385993383	AATGAGTTTCATTCACA
chr1	18492206	18492207	chr1:18492207:G:A	rs6679160	G	A	G	Sox3.mouse_HMG_3	13	1	-	4.304536048543094	-2.302724561918926	GAAGAAAGCTATTCATC
chr1	18540779	18540780	chr1:18540780:C:T	rs9439712	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	18821266	18821267	chr1:18821267:A:G	rs12125880	A	G	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	18895502	18895503	chr1:18895503:T:C	rs117441947	T	C	-	Sox3.mouse_HMG_3	5	1	-	2.670195565689525	-3.818639356381337	GGTGCATGGCCTTCATG
chr1	18895525	18895526	chr1:18895526:A:G	rs1009971	A	G	-	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr1	18952553	18952554	chr1:18952554:A:G	rs28422004	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr1	19001270	19001271	chr1:19001271:C:T	rs72951502	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	19079159	19079160	chr1:19079160:T:C	rs112516138	T	C	T	Sox3.mouse_HMG_3	15	1	+	4.20445254155448	-0.5099408701605878	CATAGATGGTATTCATT
chr1	19156705	19156706	chr1:19156706:G:A	rs77259868	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	19156714	19156715	chr1:19156715:A:G	rs10799710	A	G	G	Sox3.mouse_HMG_3	16	1	-	5.613506426779474	4.746579687307195	TGTGGATTCTAGTCATT
chr1	19423181	19423182	chr1:19423182:A:G	rs6686979	A	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	19423184	19423185	chr1:19423185:T:C	rs6689918	T	C	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	19469356	19469357	chr1:19469357:T:C	rs10917454	T	C	T	Sox3.mouse_HMG_3	15	1	+	0.9688608462268093	-3.7455325654882587	ATTGTTTTCCATTCATG
chr1	19682329	19682330	chr1:19682330:C:T	rs749439107	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	19765722	19765723	chr1:19765723:T:C	rs540621768	T	C	T	Sox3.mouse_HMG_3	5	1	-	1.4456398630780907	-5.043195058992772	TGTGCATGCTAATCATT
chr1	20232726	20232727	chr1:20232727:G:A	rs372513900	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	20234940	20234941	chr1:20234941:T:G	rs7514659	T	G	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	20255817	20255818	chr1:20255818:A:G	rs375807036	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	20326458	20326459	chr1:20326459:T:G	rs7549632	T	G	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	20417052	20417053	chr1:20417053:C:T	rs10916793	C	T	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	20534767	20534768	chr1:20534768:A:G	rs55834284	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	20587991	20587992	chr1:20587992:A:G	rs12240109	A	G	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	20604413	20604414	chr1:20604414:C:T	rs181749961	C	T	C	Sox3.mouse_HMG_3	7	1	-	5.4796525720859455	-1.0738961425717821	TAGGAATGGGAGTCATG
chr1	20897107	20897108	chr1:20897108:A:T	chr1:20897108:A:T	A	T	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr1	21090533	21090534	chr1:21090534:T:C	rs61779075	T	C	T	Sox3.mouse_HMG_3	11	1	+	2.327987514099802	-3.7566233120021426	GATGAACTCTCTTCAAA
chr1	21177786	21177787	chr1:21177787:G:A	rs74058841	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	21687277	21687278	chr1:21687278:G:A	rs10493008	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	21688055	21688056	chr1:21688056:G:T	rs67730681	G	T	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr1	21709762	21709763	chr1:21709763:A:C	rs482791	A	C	t	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr1	22132676	22132677	chr1:22132677:G:A	rs742358	G	A	G	Sox3.mouse_HMG_3	14	1	+	1.9052261995036548	8.287172365930566	GCTGAATGACAGTCGCA
chr1	22272040	22272041	chr1:22272041:G:A	rs6681709	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	22315686	22315687	chr1:22315687:A:G	rs113092581	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	22386909	22386910	chr1:22386910:C:A	rs142309348	C	A	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	22538098	22538099	chr1:22538099:C:T	rs12737802	C	T	C	Sox3.mouse_HMG_3	8	1	+	0.06812336418938725	-0.19399638072671865	TAAGGATGCCATTCCTG
chr1	22814924	22814925	chr1:22814925:G:A	rs138150683	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	22821248	22821249	chr1:22821249:A:T	rs7546953	A	T	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	23171358	23171359	chr1:23171359:G:A	rs533778	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	23171403	23171404	chr1:23171404:G:A	rs142586645	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	23362439	23362440	chr1:23362440:A:G	rs2849028	A	G	A	Sox3.mouse_HMG_3	6	1	-	7.396687057422367	0.7887364158815704	GAAGAATTTCAGTCAGA
chr1	23622769	23622770	chr1:23622770:A:G	rs111723401	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	23688338	23688339	chr1:23688339:C:T	rs376314374	C	T	-	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	23882292	23882293	chr1:23882293:C:T	rs7541711	C	T	C	Sox3.mouse_HMG_3	15	1	+	1.2066696110441701	5.921063022759238	GATGACTGGTTTTCACG
chr1	24008918	24008919	chr1:24008919:T:C	rs61773486	T	C	T	Sox3.mouse_HMG_3	9	1	+	1.861255245151523	1.853618568159777	CATTAAATGTATTCATT
chr1	24010839	24010840	chr1:24010840:A:G	rs375619845	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr1	24012665	24012666	chr1:24012666:C:T	rs34769613	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr1	24028356	24028357	chr1:24028357:G:A	rs4288540	G	A	A	Sox3.mouse_HMG_3	7	1	+	2.6150942418312457	-3.938454472826481	TATACATGTTATTCAGA
chr1	24138818	24138819	chr1:24138819:C:T	rs10794642	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr1	24267417	24267418	chr1:24267418:G:A	rs4564081	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	24419213	24419214	chr1:24419214:T:G	rs760969	T	G	T	Sox3.mouse_HMG_3	11	1	+	2.5505057104167705	1.1160696101209635	TCTGAATGGTATTCTCT
chr1	24436067	24436068	chr1:24436068:G:T	rs10903088	G	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	24633042	24633043	chr1:24633043:A:C	rs9725821	A	C	A	Sox3.mouse_HMG_3	11	1	-	2.32074286746267	0.8863067671668632	GTTGCTTGACATTCATG
chr1	24699102	24699103	chr1:24699103:C:T	rs77959984	C	T	C	Sox3.mouse_HMG_3	1	1	+	4.4112291648383515	5.6180118705051525	GCTGAATGGTATTCTGT
chr1	25527637	25527638	chr1:25527638:G:A	rs139061989	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr1	25541623	25541624	chr1:25541624:G:A	rs74063479	G	A	G	Sox3.mouse_HMG_3	3	1	+	0.1270851118288212	-5.654479775700408	CATGGGTGGTAGTCAGG
chr1	25561748	25561749	chr1:25561749:A:G	rs75471743	A	G	A	Sox3.mouse_HMG_3	11	1	-	7.930389302190129	1.8457784760881832	GGTGAATTACATTCACC
chr1	25572964	25572965	chr1:25572965:C:T	rs78758704	C	T	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	26377838	26377839	chr1:26377839:A:T	rs6598962	A	T	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	26545177	26545178	chr1:26545178:C:T	rs4970486	C	T	t	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr1	26694623	26694624	chr1:26694624:G:T	rs71636770	G	T	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	26971179	26971180	chr1:26971180:A:G	rs149496202	A	G	A	Sox3.mouse_HMG_3	1	1	-	11.83618531607283	10.62940261040603	CTTGAATTTCATTCATT
chr1	27049787	27049788	chr1:27049788:C:G	rs115275803	C	G	C	Sox3.mouse_HMG_3	12	1	-	0.5259308976215966	0.7141521765427401	AGTGAATGACAGGCCTG
chr1	27293682	27293683	chr1:27293683:G:A	rs116183017	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	27904992	27904993	chr1:27904993:T:A	rs28988929	T	A	T	Sox3.mouse_HMG_3	6	1	-	6.6217902426444475	13.37284172782592	TTTGAAATACATTCATT
chr1	27973567	27973568	chr1:27973568:T:A	rs33981147	T	A	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	28343226	28343227	chr1:28343227:C:T	rs114111950	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	28544621	28544622	chr1:28544622:C:G	chr1:28544622:C:G	C	G	C	Sox3.mouse_HMG_3	9	1	+	1.0156249407717168	-4.324304066602847	AAGGAGTGTCAGTCATC
chr1	29114027	29114028	chr1:29114028:G:C	rs558956	G	C	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	29254577	29254578	chr1:29254578:C:G	rs16838061	C	G	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	29368037	29368038	chr1:29368038:T:C	rs56383740	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	29490846	29490847	chr1:29490847:C:G	rs147123451	C	G	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	29600480	29600481	chr1:29600481:G:T	rs10914201	G	T	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	29624446	29624447	chr1:29624447:G:A	rs9283399	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	29663873	29663874	chr1:29663874:C:T	rs271364	C	T	t	Sox3.mouse_HMG_3	0	1	-	3.7793405043948005	2.9540566032484565	GGTAAATGGCAGTCAGC
chr1	29711750	29711751	chr1:29711751:G:A	rs914814667	G	A	G	Sox3.mouse_HMG_3	15	1	-	6.038197915038466	10.752591326753535	TATGAATGACAGCCACG
chr1	29974546	29974547	chr1:29974547:T:C	rs267707	T	C	T	Sox3.mouse_HMG_3	6	1	+	5.623654614908403	-0.9842960266323926	GATGAATGACATTTCTA
chr1	30034147	30034148	chr1:30034148:C:T	rs11588815	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	30188571	30188572	chr1:30188572:C:G	rs7524193	C	G	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr1	30223775	30223776	chr1:30223776:C:G	rs12407702	C	G	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	30359914	30359915	chr1:30359915:G:T	rs667323	G	T	.	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	30610262	30610263	chr1:30610263:T:C	rs520603	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	30668707	30668708	chr1:30668708:C:T	rs12409891	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	30864712	30864713	chr1:30864713:A:G	rs2488236	A	G	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	30929721	30929722	chr1:30929722:C:A	rs78471427	C	A	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	31398076	31398077	chr1:31398077:A:T	rs7529851	A	T	A	Sox3.mouse_HMG_3	16	1	+	2.30021519138032	1.1492261316278243	CATTCATTTCATTCATA
chr1	31572901	31572902	chr1:31572902:G:A	rs1187689045	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	31583594	31583595	chr1:31583595:C:T	rs76867880	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	31600582	31600583	chr1:31600583:C:T	rs6662073	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr1	31726295	31726296	chr1:31726296:C:T	rs75751138	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	31956475	31956476	chr1:31956476:C:T	rs115565496	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	31987954	31987955	chr1:31987955:A:C	rs149892475	A	C	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	32062568	32062569	chr1:32062569:T:C	rs115483705	T	C	T	Sox3.mouse_HMG_3	4	1	-	-0.2941704234866147	-6.676987151480682	GGTGACTGACATACAGG
chr1	32062579	32062580	chr1:32062580:G:A	chr1:32062580:G:A	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	32639850	32639851	chr1:32639851:T:C	rs10157362	T	C	t	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	32780838	32780839	chr1:32780839:T:C	rs2282293	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr1	32953604	32953605	chr1:32953605:C:T	rs194652	C	T	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	32953640	32953641	chr1:32953641:T:C	rs12409620	T	C	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr1	32985030	32985031	chr1:32985031:C:T	rs17511198	C	T	c	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr1	32989509	32989510	chr1:32989510:T:G	chr1:32989510:T:G	T	G	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr1	33133218	33133219	chr1:33133219:C:G	rs556657	C	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr1	33151746	33151747	chr1:33151747:A:G	rs7545367	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	33441865	33441866	chr1:33441866:A:G	rs12022060	A	G	G	Sox3.mouse_HMG_3	4	1	+	1.0234571715558025	-5.359359556438265	GGTGAAATGCAGACATG
chr1	33459005	33459006	chr1:33459006:T:C	rs12029974	T	C	T	Sox3.mouse_HMG_3	9	1	+	1.1147673003681797	1.1071306233764338	CATGGTTGGTATTCAAT
chr1	33551924	33551925	chr1:33551925:G:A	rs61801994	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	33586671	33586672	chr1:33586672:C:T	rs16835645	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	33785879	33785880	chr1:33785880:T:C	rs12133088	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	33883958	33883959	chr1:33883959:G:C	rs4653356	G	C	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	33994288	33994289	chr1:33994289:G:C	rs55924602	G	C	g	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	34328228	34328229	chr1:34328229:T:G	rs10914912	T	G	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr1	34519857	34519858	chr1:34519858:A:G	rs3845485	A	G	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr1	34651067	34651068	chr1:34651068:T:A	rs693227	T	A	A	Sox3.mouse_HMG_3	14	1	-	4.768613497363649	-1.613332669063261	TATGAATTGCACACATT
chr1	34688260	34688261	chr1:34688261:C:T	rs115672896	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	34788242	34788243	chr1:34788243:C:T	rs6697367	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	34805004	34805005	chr1:34805005:A:G	rs72657905	A	G	A	Sox3.mouse_HMG_3	15	1	+	0.9500786303972009	0.09129728354078037	CATGAAAGGCAGACAAA
chr1	34898092	34898093	chr1:34898093:A:T	rs55656811	A	T	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	34898107	34898108	chr1:34898108:T:C	rs4372214	T	C	T	Sox3.mouse_HMG_3	16	1	-	1.8270687459132222	1.8630092023657479	TGTAAATGCCAGGCATA
chr1	35540165	35540166	chr1:35540166:T:C	rs148984069	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	35931403	35931404	chr1:35931404:A:C	chr1:35931404:A:C	A	C	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	35931407	35931408	chr1:35931408:A:C	chr1:35931408:A:C	A	C	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr1	36088234	36088235	chr1:36088235:A:C	rs12131875	A	C	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	36421731	36421732	chr1:36421732:C:G	rs2153337	C	G	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	36458041	36458042	chr1:36458042:G:C	rs16823045	G	C	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	36698276	36698277	chr1:36698277:A:G	rs2983118	A	G	a	Sox3.mouse_HMG_3	10	1	-	3.7995210081172526	3.7995210081172526	AATGAATTCTTGTCAGC
chr1	36729451	36729452	chr1:36729452:C:G	rs60185022	C	G	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	36835334	36835335	chr1:36835335:A:T	rs3767042	A	T	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	36864385	36864386	chr1:36864386:C:T	rs565537	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	36864392	36864393	chr1:36864393:C:T	rs143504394	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	37020972	37020973	chr1:37020973:A:C	rs822853	A	C	C	Sox3.mouse_HMG_3	9	1	-	5.737216914176908	0.3896512298105992	TACAAATTGTATTCATA
chr1	37048252	37048253	chr1:37048253:T:C	rs575939	T	C	C	Sox3.mouse_HMG_3	5	1	-	2.5216533573831565	-3.967181564687708	TATGAATTCTAGCCTTT
chr1	37315452	37315453	chr1:37315453:T:C	rs6673253	T	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr1	37322961	37322962	chr1:37322962:C:T	rs115912966	C	T	C	Sox3.mouse_HMG_3	8	1	+	3.304330387919859	3.042210643003753	TATGAATCCCAGGCATT
chr1	37393463	37393464	chr1:37393464:A:G	rs2492297	A	G	a	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr1	37452252	37452253	chr1:37452253:G:A	rs77500219	G	A	G	Sox3.mouse_HMG_3	10	1	-	0.36482719475547953	0.36482719475547953	GAGGAATTGCCGTCAGG
chr1	37461607	37461608	chr1:37461608:T:C	rs2484554	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	37557714	37557715	chr1:37557715:C:T	rs11749	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	37722522	37722523	chr1:37722523:A:G	rs6426030	A	G	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	38444469	38444470	chr1:38444470:G:C	rs114365352	G	C	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr1	38581446	38581447	chr1:38581447:G:A	rs4970605	G	A	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr1	39040468	39040469	chr1:39040469:A:G	rs11205599	A	G	a	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	39566810	39566811	chr1:39566811:G:T	rs140875787	G	T	G	Sox3.mouse_HMG_3	3	1	+	1.8910038549647796	-5.0154906295499355	GATGAGGGCCAGTCAAG
chr1	39571271	39571272	chr1:39571272:G:A	rs61743745	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	39700347	39700348	chr1:39700348:C:T	rs4142010	C	T	c	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	39816772	39816773	chr1:39816773:G:A	rs72666932	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr1	39982547	39982548	chr1:39982548:T:C	rs72666997	T	C	T	Sox3.mouse_HMG_3	2	1	+	2.018251689118853	-4.5876274291120795	TATAATTTACATTCAGG
chr1	40008854	40008855	chr1:40008855:G:A	rs61470791	G	A	g	Sox3.mouse_HMG_3	13	1	-	0.84283082106908	-5.76442978939294	AAGGAATGATTGTCATC
chr1	40323674	40323675	chr1:40323675:T:C	rs449541	T	C	C	Sox3.mouse_HMG_3	15	1	-	3.604689738226063	2.7459083913696425	GATGAATCAGATTCAAT
chr1	40323688	40323689	chr1:40323689:T:A	rs425509	T	A	T	Sox3.mouse_HMG_3	1	1	-	3.604689738226063	0.6346129300369697	GATGAATCAGATTCAAT
chr1	40609536	40609537	chr1:40609537:C:T	rs500586	C	T	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	40639929	40639930	chr1:40639930:C:G	rs3820527	C	G	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	40842362	40842363	chr1:40842363:C:T	rs113717677	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	40876039	40876040	chr1:40876040:G:A	rs140672716	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr1	40939991	40939992	chr1:40939992:G:T	rs6695161	G	T	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr1	41264523	41264524	chr1:41264524:T:G	rs2275930	T	G	T	Sox3.mouse_HMG_3	7	1	+	1.9349596876393484	2.7849926298694188	GGTGTATTGTCTTCATA
chr1	41308881	41308882	chr1:41308882:C:T	rs76603217	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	41351685	41351686	chr1:41351686:C:T	rs150729744	C	T	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	41806527	41806528	chr1:41806528:G:A	rs76664543	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	41899654	41899655	chr1:41899655:T:A	rs783626	T	A	A	Sox3.mouse_HMG_3	4	1	-	0.8989090333065097	-5.708531631172203	GATGAGTGACAATCAGC
chr1	42183377	42183378	chr1:42183378:A:G	rs56322807	A	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	42222858	42222859	chr1:42222859:C:T	rs567153889	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	42246245	42246246	chr1:42246246:T:C	rs343393	T	C	t	Sox3.mouse_HMG_3	15	1	-	3.8476789202266932	2.9888975733702727	GATGAATGGTTTGCAAA
chr1	42259668	42259669	chr1:42259669:T:G	rs116572095	T	G	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	42394376	42394377	chr1:42394377:G:A	rs74068415	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr1	42578492	42578493	chr1:42578493:G:T	rs7519637	G	T	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	42578503	42578504	chr1:42578504:G:T	rs7519642	G	T	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	42736196	42736197	chr1:42736197:C:A	rs111438636	C	A	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	42928322	42928323	chr1:42928323:T:A	rs149351115	T	A	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr1	42939472	42939473	chr1:42939473:C:T	rs1274021807	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	42947121	42947122	chr1:42947122:A:G	rs900837	A	G	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr1	42972060	42972061	chr1:42972061:C:T	rs16830158	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	42978996	42978997	chr1:42978997:G:A	rs74386636	G	A	G	Sox3.mouse_HMG_3	16	1	-	0.5783160909468212	1.4452428304191	AATGAATGGCAATGAGC
chr1	43183836	43183837	chr1:43183837:A:G	rs663824	A	G	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr1	43209302	43209303	chr1:43209303:A:G	rs2453414	A	G	A	Sox3.mouse_HMG_3	11	1	-	2.6092593309520193	-3.475351495149927	TTTGACTGCTATGCATG
chr1	43550877	43550878	chr1:43550878:G:C	rs116156761	G	C	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr1	43587790	43587791	chr1:43587791:C:T	rs57242601	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr1	43766135	43766136	chr1:43766136:C:A	rs3791046	C	A	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	44092589	44092590	chr1:44092590:C:T	rs7544459	C	T	C	Sox3.mouse_HMG_3	10	1	+	0.9829483214615151	0.9829483214615151	AATGAATTGTCGTCTTC
chr1	44489525	44489526	chr1:44489526:A:G	rs116593999	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	44672220	44672221	chr1:44672221:A:G	rs3889695	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	44700840	44700841	chr1:44700841:T:A	rs2355710	T	A	T	Sox3.mouse_HMG_3	6	1	+	2.4018957785780097	-4.349155706603461	TTTTAATCCTATTCATA
chr1	44732223	44732224	chr1:44732224:G:A	rs74070590	G	A	G	Sox3.mouse_HMG_3	7	1	+	2.385779227312349	-4.167769487345378	AATGAATGTCACACAGA
chr1	45994213	45994214	chr1:45994214:C:A	rs12097799	C	A	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	46044969	46044970	chr1:46044970:C:T	rs1707317	C	T	T	Sox3.mouse_HMG_3	1	1	-	2.7789174991254546	5.879047435562747	GGCGAAAGGCATTCATA
chr1	46136621	46136622	chr1:46136622:A:C	rs72677556	A	C	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	46183322	46183323	chr1:46183323:T:C	rs74511574	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	46191291	46191292	chr1:46191292:A:G	rs11584024	A	G	.	Sox3.mouse_HMG_3	14	1	+	0.4822161041457077	-5.899730062281203	GCTGGACGCTATTCATT
chr1	46191547	46191548	chr1:46191548:C:T	rs7552312	C	T	.	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	46528676	46528677	chr1:46528677:T:G	rs115830566	T	G	C	Sox3.mouse_HMG_3	2	1	+	0.10776378458058367	-6.64121617729102	GCTGAGTGGGATTCAGA
chr1	46600710	46600711	chr1:46600711:T:C	rs11211319	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	46614536	46614537	chr1:46614537:C:T	chr1:46614537:C:T	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	46614541	46614542	chr1:46614542:A:G	chr1:46614542:A:G	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	46715077	46715078	chr1:46715078:G:C	rs12078635	G	C	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	46935104	46935105	chr1:46935105:A:C	rs376499620	A	C	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	47143816	47143817	chr1:47143817:T:C	rs10789501	T	C	t	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr1	47185487	47185488	chr1:47185488:T:C	rs79870429	T	C	T	Sox3.mouse_HMG_3	16	1	-	5.94947626583341	5.985416722285936	GTTGAATGCCCTTCAGA
chr1	47185506	47185507	chr1:47185507:C:T	rs72894592	C	T	c	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr1	47185516	47185517	chr1:47185517:G:A	rs76178225	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	47506745	47506746	chr1:47506746:G:C	rs1013176	G	C	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr1	47507561	47507562	chr1:47507562:C:T	rs7543243	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	47721095	47721096	chr1:47721096:G:A	rs1992298	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	47723580	47723581	chr1:47723581:C:T	rs7530242	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	47940994	47940995	chr1:47940995:A:G	rs116289046	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	47972412	47972413	chr1:47972413:C:A	rs77136960	C	A	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	48196541	48196542	chr1:48196542:C:T	rs823845	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	48344439	48344440	chr1:48344440:T:C	rs1120985	T	C	T	Sox3.mouse_HMG_3	5	1	-	3.4304613805274586	-3.0583735415434052	TGTGAACTTCATTCAGT
chr1	48785971	48785972	chr1:48785972:G:C	rs144348044	G	C	G	Sox3.mouse_HMG_3	9	1	-	0.14937575718641927	-5.190553250188145	TGTGAAGGGCAGGCATT
chr1	48916834	48916835	chr1:48916835:G:A	rs10430111	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr1	49467154	49467155	chr1:49467155:A:G	rs71647738	A	G	A	Sox3.mouse_HMG_3	1	1	+	1.0539985256083548	-2.046131410828938	CATGAAGGTGAGTCAAG
chr1	50208886	50208887	chr1:50208887:A:G	rs11576734	A	G	A	Sox3.mouse_HMG_3	7	1	-	2.0184557369142073	-3.3849554430631095	GTTTAATTGGATTCATT
chr1	50320993	50320994	chr1:50320994:C:T	rs11205704	C	T	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr1	50369090	50369091	chr1:50369091:C:T	rs113471291	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr1	50704216	50704217	chr1:50704217:T:C	rs115295033	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	50857883	50857884	chr1:50857884:T:C	rs200690170	T	C	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr1	50969937	50969938	chr1:50969938:T:G	rs76136361	T	G	T	Sox3.mouse_HMG_3	1	1	-	1.2008956889572004	-2.975963824898696	AAGGAAAGACATTCAGG
chr1	51235132	51235133	chr1:51235133:G:C	rs118158276	G	C	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	51237970	51237971	chr1:51237971:T:C	rs78334692	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	51261266	51261267	chr1:51261267:T:G	rs34653975	T	G	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr1	52238657	52238658	chr1:52238658:A:C	rs3790525	A	C	A	Sox3.mouse_HMG_3	14	1	+	8.765339393308214	2.383393226881303	GATGAATGATAGCCAAG
chr1	52648872	52648873	chr1:52648873:C:T	rs7523963	C	T	G	Sox3.mouse_HMG_3	15	1	-	0.26317835545109713	1.1219597023075178	GATGAACTGTATTCCGC
chr1	52699936	52699937	chr1:52699937:C:T	rs6688064	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	52917647	52917648	chr1:52917648:T:C	rs74482100	T	C	T	Sox3.mouse_HMG_3	12	1	+	7.734046822072649	1.5411932546718832	CATTAATTACAGTCATG
chr1	53015031	53015032	chr1:53015032:G:A	rs80253221	G	A	g	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr1	53015072	53015073	chr1:53015073:G:A	rs7529265	G	A	N	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr1	53144421	53144422	chr1:53144422:A:G	rs11206113	A	G	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	53144449	53144450	chr1:53144450:G:A	rs11206114	G	A	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	53165241	53165242	chr1:53165242:G:C	rs1288333	G	C	C	Sox3.mouse_HMG_3	0	1	+	2.521879266285942	0.7980877671493247	GGTTAATGGTCTTCATG
chr1	53313768	53313769	chr1:53313769:G:T	rs12084300	G	T	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr1	53551759	53551760	chr1:53551760:G:C	rs72895264	G	C	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	53558816	53558817	chr1:53558817:C:T	rs568626	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	53584281	53584282	chr1:53584282:T:C	rs77559236	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	53626899	53626900	chr1:53626900:G:A	rs12405264	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	53984816	53984817	chr1:53984817:A:G	rs638749	A	G	A	Sox3.mouse_HMG_3	14	1	-	-0.91130248933735	-0.91130248933735	GATGATAGCCATTCTTG
chr1	54323947	54323948	chr1:54323948:A:C	rs71637840	A	C	A	Sox3.mouse_HMG_3	6	1	-	2.2118216305124134	-4.539229854669058	TATAAATGATACTCAGT
chr1	54329256	54329257	chr1:54329257:A:G	rs12564882	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr1	54409103	54409104	chr1:54409104:C:G	rs72895826	C	G	C	Sox3.mouse_HMG_3	10	1	-	7.534953554874977	7.3918527112343035	CTTGAATGCTGTTCATG
chr1	54421576	54421577	chr1:54421577:C:T	rs4927103	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr1	54437056	54437057	chr1:54437057:C:T	rs937764699	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	54830662	54830663	chr1:54830663:G:A	rs7367000	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr1	54977185	54977186	chr1:54977186:C:T	rs2433671	C	T	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	55048508	55048509	chr1:55048509:T:C	rs535471	T	C	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr1	55048541	55048542	chr1:55048542:G:T	rs557211	G	T	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr1	55189143	55189144	chr1:55189144:T:C	rs75595726	T	C	T	Sox3.mouse_HMG_3	11	1	+	5.197422124222718	-0.8871887018792275	TAACAATTCCATTCATA
chr1	55196840	55196841	chr1:55196841:A:G	rs74073065	A	G	A	Sox3.mouse_HMG_3	4	1	+	0.8569610301106132	-5.525855697883455	GTTGAGTTCCAGCCATA
chr1	55258001	55258002	chr1:55258002:A:T	rs7538252	A	T	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	55592573	55592574	chr1:55592574:T:C	rs1155836	T	C	C	Sox3.mouse_HMG_3	9	1	+	4.229118007048644	4.221481330056896	GATAAATGATATTCCAG
chr1	55623309	55623310	chr1:55623310:A:G	rs11206643	A	G	A	Sox3.mouse_HMG_3	2	1	-	4.086278419284477	-2.519600698946455	CATGAATGTTATTAGTG
chr1	55667654	55667655	chr1:55667655:G:C	rs36150385	G	C	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	56032213	56032214	chr1:56032214:A:G	rs35600714	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	56142414	56142415	chr1:56142415:C:T	rs116057551	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr1	56262211	56262212	chr1:56262212:T:C	rs947008	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr1	56262747	56262748	chr1:56262748:A:G	rs56022955	A	G	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	56338685	56338686	chr1:56338686:G:A	rs12079898	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	56527106	56527107	chr1:56527107:C:T	rs78616610	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	56572386	56572387	chr1:56572387:G:C	rs1041603	G	C	G	Sox3.mouse_HMG_3	3	1	+	1.4805774194656744	-5.268913316239376	GTTGAATGACAGGAATG
chr1	56650828	56650829	chr1:56650829:T:G	rs12073253	T	G	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	56799844	56799845	chr1:56799845:T:C	rs1935556	T	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	56825697	56825698	chr1:56825698:G:A	rs10889020	G	A	G	Sox3.mouse_HMG_3	10	1	+	0.27494364215995437	6.882894283700752	CATGAAGTCCGGTCATT
chr1	57072858	57072859	chr1:57072859:C:G	rs6660463	C	G	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr1	57307416	57307417	chr1:57307417:C:G	rs17115580	C	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	57500305	57500306	chr1:57500306:C:T	rs143531376	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	57530724	57530725	chr1:57530725:C:T	rs2793626	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	57591165	57591166	chr1:57591166:G:A	rs79578522	G	A	g	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	57642564	57642565	chr1:57642565:C:G	rs12038397	C	G	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	58005418	58005419	chr1:58005419:T:C	rs1325449	T	C	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	58257885	58257886	chr1:58257886:G:A	rs17117200	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	58325047	58325048	chr1:58325048:G:T	rs80033524	G	T	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	58436815	58436816	chr1:58436816:T:C	rs706428	T	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	58446765	58446766	chr1:58446766:G:A	rs822169	G	A	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr1	58545464	58545465	chr1:58545465:C:A	rs12125391	C	A	C	Sox3.mouse_HMG_3	13	1	+	5.508359361990323	-0.874277311987053	GAAGAAATCTATTCATG
chr1	58622300	58622301	chr1:58622301:T:C	rs60698357	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	58735237	58735238	chr1:58735238:T:C	rs2811865	T	C	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	58972530	58972531	chr1:58972531:G:A	rs2716128	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr1	58979423	58979424	chr1:58979424:G:C	rs72921602	G	C	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	59113281	59113282	chr1:59113282:G:T	rs115077861	G	T	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	59181378	59181379	chr1:59181379:C:T	rs78147819	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	59243859	59243860	chr1:59243860:T:C	rs10889133	T	C	T	Sox3.mouse_HMG_3	14	1	-	4.195876120383344	-2.186070046043566	AAAAAATTTCATTCATT
chr1	59243868	59243869	chr1:59243869:T:A	rs7529588	T	A	A	Sox3.mouse_HMG_3	5	1	-	4.195876120383344	-2.4115645440953677	AAAAAATTTCATTCATT
chr1	59272156	59272157	chr1:59272157:T:G	rs11207434	T	G	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	59415755	59415756	chr1:59415756:T:C	rs960829	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	59443592	59443593	chr1:59443593:C:T	rs745943081	C	T	C	Sox3.mouse_HMG_3	8	1	-	1.5376974768304	0.9145808296525868	TCTTAATGGCATTCCTG
chr1	59687012	59687013	chr1:59687013:A:G	rs12027119	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	59817467	59817468	chr1:59817468:A:G	rs1933219	A	G	A	Sox3.mouse_HMG_3	10	1	+	1.066156045046312	-5.541794596494485	GATGATTTCCAGTGAAG
chr1	59986678	59986679	chr1:59986679:G:A	rs74481705	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	60014963	60014964	chr1:60014964:T:C	rs74085873	T	C	T	Sox3.mouse_HMG_3	6	1	+	2.7849740861307417	-3.8229765554100554	GAAGAATTGCCTTCAGA
chr1	60759708	60759709	chr1:60759709:T:C	rs186328	T	C	C	Sox3.mouse_HMG_3	10	1	-	3.2830223286832823	-3.324928312857515	AATGAAAGGCATACAAA
chr1	60760234	60760235	chr1:60760235:A:G	rs17302660	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	60849800	60849801	chr1:60849801:A:C	rs1399164	A	C	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	60865936	60865937	chr1:60865937:A:G	rs446550	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	60916287	60916288	chr1:60916288:T:G	rs78266530	T	G	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	60916292	60916293	chr1:60916293:T:C	rs12085178	T	C	t	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	60923141	60923142	chr1:60923142:T:C	rs555880	T	C	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	61088128	61088129	chr1:61088129:C:G	rs3767302	C	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	61097487	61097488	chr1:61097488:G:A	chr1:61097488:G:A	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	61160066	61160067	chr1:61160067:A:G	rs142031624	A	G	A	Sox3.mouse_HMG_3	2	1	-	4.035900199147836	-2.569978919083095	GATGAAAGGTATCCAAA
chr1	61190761	61190762	chr1:61190762:C:G	rs143648070	C	G	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	61202609	61202610	chr1:61202610:A:C	rs187858647	A	C	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	61247245	61247246	chr1:61247246:T:C	rs333166	T	C	T	Sox3.mouse_HMG_3	5	1	-	9.13091609482963	2.6420811727587648	TATCAATGGCATTCAGG
chr1	61268902	61268903	chr1:61268903:A:G	rs17121878	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr1	61290761	61290762	chr1:61290762:G:T	rs2782549	G	T	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr1	61441217	61441218	chr1:61441218:C:G	rs2207789	C	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	61452848	61452849	chr1:61452849:C:G	rs181799623	C	G	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	61709867	61709868	chr1:61709868:C:A	rs1151771	C	A	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	62022676	62022677	chr1:62022677:C:T	rs11207894	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	62022685	62022686	chr1:62022686:T:C	rs7556298	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	62314965	62314966	chr1:62314966:C:T	rs117692260	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr1	62590440	62590441	chr1:62590441:G:A	rs1748197	G	A	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	62625799	62625800	chr1:62625800:G:C	rs11207998	G	C	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	62729967	62729968	chr1:62729968:T:C	rs974391214	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr1	62750246	62750247	chr1:62750247:T:G	rs12133507	T	G	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	62755107	62755108	chr1:62755108:T:C	rs12133142	T	C	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	62908245	62908246	chr1:62908246:A:G	rs12047682	A	G	A	Sox3.mouse_HMG_3	0	1	-	3.4965499291945	2.041679283857637	TATGAATTTCATTAGTT
chr1	63099481	63099482	chr1:63099482:T:C	rs80206427	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr1	63112582	63112583	chr1:63112583:C:T	rs977325	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	63200174	63200175	chr1:63200175:T:C	rs1887810	T	C	T	Sox3.mouse_HMG_3	0	1	-	6.811450157087618	7.636734058233962	AGTGAGTGGTATTCATC
chr1	63245449	63245450	chr1:63245450:T:C	rs617306	T	C	C	Sox3.mouse_HMG_3	8	1	-	3.557185376660876	4.1803020238386885	TGTGAATGAGATTAATG
chr1	63328441	63328442	chr1:63328442:A:T	rs6701712	A	T	T	Sox3.mouse_HMG_3	12	1	-	2.3004884896436995	-3.812322370083532	GAGGAAATGCAGTCATT
chr1	63330990	63330991	chr1:63330991:A:G	rs74349402	A	G	A	Sox3.mouse_HMG_3	5	1	+	4.6172360504991286	-1.871598871571737	AATGAATGCTTTTTATA
chr1	63453321	63453322	chr1:63453322:T:A	rs9436674	T	A	T	Sox3.mouse_HMG_3	12	1	+	9.313494094042547	3.200683234315318	GCTAAATGGCATTCATG
chr1	63507782	63507783	chr1:63507783:T:C	rs10889425	T	C	T	Sox3.mouse_HMG_3	16	1	-	3.2712582753717108	3.3071987318242364	TATGAATGCCATTTCAA
chr1	63616607	63616608	chr1:63616608:A:G	rs927019	A	G	A	Sox3.mouse_HMG_3	2	1	-	4.146317127434751	-2.4595619907961797	GATGTGTTGTATTCATT
chr1	63621772	63621773	chr1:63621773:A:G	rs3790861	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr1	63698338	63698339	chr1:63698339:G:A	rs72924668	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	63704313	63704314	chr1:63704314:A:G	rs1876185	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	63753036	63753037	chr1:63753037:G:C	rs7526015	G	C	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	63837079	63837080	chr1:63837080:C:T	rs72683045	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr1	63995346	63995347	chr1:63995347:G:A	rs285367	G	A	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr1	64020097	64020098	chr1:64020098:G:A	rs567230968	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	64348765	64348766	chr1:64348766:A:G	rs79980866	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	64348781	64348782	chr1:64348782:C:T	rs1514749	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr1	64414399	64414400	chr1:64414400:C:T	rs35670908	C	T	-	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	64496097	64496098	chr1:64496098:A:G	rs305562	A	G	G	Sox3.mouse_HMG_3	4	1	+	0.7254821197647638	-5.657334608229304	CATGAGTGGTAGTGAAA
chr1	64678507	64678508	chr1:64678508:G:C	rs2478156	G	C	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr1	64879932	64879933	chr1:64879933:C:A	rs310209	C	A	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	65195736	65195737	chr1:65195737:A:G	rs80260428	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr1	65195780	65195781	chr1:65195781:C:G	rs76292359	C	G	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr1	65344311	65344312	chr1:65344312:C:T	rs113476349	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	65344617	65344618	chr1:65344618:A:G	rs61066308	A	G	A	Sox3.mouse_HMG_3	1	1	-	6.339927449105734	5.133144743438935	ATTGAATTCTAGGCATA
chr1	65371705	65371706	chr1:65371706:T:C	rs6693498	T	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr1	65396027	65396028	chr1:65396028:A:T	rs1048928014	A	T	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	65430928	65430929	chr1:65430929:A:G	rs11208648	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	65458157	65458158	chr1:65458158:G:A	rs72681330	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	65515154	65515155	chr1:65515155:C:T	rs1171274	C	T	C	Sox3.mouse_HMG_3	3	1	-	5.105126063200936	-0.6764388243282952	CCTGAATGTTATTCCTT
chr1	65554535	65554536	chr1:65554536:C:A	rs1751485	C	A	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	65959159	65959160	chr1:65959160:G:C	chr1:65959160:G:C	G	C	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	65959208	65959209	chr1:65959209:A:G	rs79668322	A	G	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr1	66155843	66155844	chr1:66155844:A:G	rs582237	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	66241057	66241058	chr1:66241058:C:G	rs72924449	C	G	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	66265845	66265846	chr1:66265846:G:A	rs138803596	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	66395372	66395373	chr1:66395373:A:G	rs12138854	A	G	A	Sox3.mouse_HMG_3	13	1	-	8.351081627846202	14.958342238308223	AATGAATGGCAGTTATC
chr1	66415570	66415571	chr1:66415571:C:T	rs77260138	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	66449441	66449442	chr1:66449442:G:A	rs783435	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	66480357	66480358	chr1:66480358:A:G	rs6677697	A	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	66491001	66491002	chr1:66491002:G:A	rs9651195	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr1	66528035	66528036	chr1:66528036:A:G	rs72934131	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	66541437	66541438	chr1:66541438:G:A	rs57941297	G	A	A	Sox3.mouse_HMG_3	1	1	+	1.1979714178143832	4.298101354251676	AGTGAATGAGTGTCATG
chr1	66600227	66600228	chr1:66600228:G:A	rs10889634	G	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	66637348	66637349	chr1:66637349:C:T	rs17129226	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	66669416	66669417	chr1:66669417:G:A	rs7536634	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	66766945	66766946	chr1:66766946:G:T	rs68063507	G	T	G	Sox3.mouse_HMG_3	0	1	-	2.2403562348863604	3.138863832876635	CATGAATTCTCATCATT
chr1	66799563	66799564	chr1:66799564:A:G	rs559226328	A	G	A	Sox3.mouse_HMG_3	10	1	+	4.4717506544967085	-2.1361999870440886	AATGCATTGTATTCCTG
chr1	66922217	66922218	chr1:66922218:T:C	rs3008856	T	C	c	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr1	66995983	66995984	chr1:66995984:T:C	rs12044492	T	C	T	Sox3.mouse_HMG_3	9	1	+	2.350630821926099	2.342994144934353	TATGAAATATATTCTTC
chr1	67190602	67190603	chr1:67190603:A:G	rs11209013	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.923411191981505	-0.1767187444557885	CATGAATGATAGCCCTG
chr1	67274408	67274409	chr1:67274409:G:A	rs11209032	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	67275572	67275573	chr1:67275573:C:A	rs4655532	C	A	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	67307126	67307127	chr1:67307127:C:T	rs11810249	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	67314067	67314068	chr1:67314068:C:T	rs17129749	C	T	C	Sox3.mouse_HMG_3	10	1	-	4.751144865169117	11.359095506709917	AATGAATGTCGTTAATG
chr1	67560409	67560410	chr1:67560410:C:A	rs6679494	C	A	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	67597706	67597707	chr1:67597707:G:C	rs55747525	G	C	G	Sox3.mouse_HMG_3	13	1	+	3.385580820472232	9.992841430934252	AATTAATTTTATTGATG
chr1	67771469	67771470	chr1:67771470:C:T	rs79418367	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr1	67815386	67815387	chr1:67815387:C:T	rs780852710	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	67894203	67894204	chr1:67894204:T:C	rs12025677	T	C	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	68116987	68116988	chr1:68116988:C:T	rs2986216	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	68120024	68120025	chr1:68120025:G:T	rs12217115	G	T	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	68155078	68155079	chr1:68155079:G:A	rs3762371	G	A	G	Sox3.mouse_HMG_3	0	1	+	5.14795524239465	4.322671341248306	GATCAATTACATTCACT
chr1	68197459	68197460	chr1:68197460:C:T	rs919540	C	T	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	68216763	68216764	chr1:68216764:T:C	rs12760857	T	C	T	Sox3.mouse_HMG_3	12	1	+	2.4859388098334163	-3.7069147575673513	GGTTAATGGTTTTCATA
chr1	68285122	68285123	chr1:68285123:T:C	rs7513186	T	C	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	68346436	68346437	chr1:68346437:G:T	rs35399029	G	T	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	68349786	68349787	chr1:68349787:A:G	rs6698940	A	G	G	Sox3.mouse_HMG_3	14	1	+	2.1113307436352335	-4.2706154227916775	GTTGAATGGTAGGAATG
chr1	68384995	68384996	chr1:68384996:G:A	rs113963444	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	68396484	68396485	chr1:68396485:G:A	rs112501553	G	A	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	68591737	68591738	chr1:68591738:C:T	rs2473797	C	T	T	Sox3.mouse_HMG_3	7	1	-	2.3661088786463336	-4.187439836011395	GATGACTGTTAGACATC
chr1	68820033	68820034	chr1:68820034:T:C	rs146912890	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	68918834	68918835	chr1:68918835:G:C	rs4420133	G	C	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	68975279	68975280	chr1:68975280:A:G	rs9436867	A	G	A	Sox3.mouse_HMG_3	8	1	-	1.2824515956127438	1.5445713405288497	CATGAATATTTTTCAAG
chr1	69166897	69166898	chr1:69166898:T:C	rs12567267	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	69249420	69249421	chr1:69249421:G:C	rs2249479	G	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr1	69601115	69601116	chr1:69601116:C:T	rs113858851	C	T	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr1	69994445	69994446	chr1:69994446:T:G	rs12024870	T	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	70365343	70365344	chr1:70365344:C:T	rs71500608	C	T	t	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	70553302	70553303	chr1:70553303:C:T	rs4233083	C	T	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	70628213	70628214	chr1:70628214:A:G	rs1334994	A	G	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr1	70819270	70819271	chr1:70819271:G:C	rs1327453	G	C	G	Sox3.mouse_HMG_3	7	1	+	0.6796972265915859	-5.573746895615804	GATGACTGATATCCAGC
chr1	70821314	70821315	chr1:70821315:T:A	rs4320735	T	A	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	71106908	71106909	chr1:71106909:A:G	rs11209747	A	G	A	Sox3.mouse_HMG_3	15	1	+	2.957441708183382	2.0986603613269614	TGTGCATGCCAGTCAAC
chr1	72044833	72044834	chr1:72044834:G:C	rs1486086	G	C	G	Sox3.mouse_HMG_3	8	1	-	4.167433125203626	4.610215793881558	TATTAACTCTATTCATA
chr1	72122435	72122436	chr1:72122436:A:G	rs12128707	A	G	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr1	72154277	72154278	chr1:72154278:C:A	rs2422137	C	A	C	Sox3.mouse_HMG_3	0	1	-	1.695694446222314	1.426773592422559	GTTGAAATACATTCCTG
chr1	72171546	72171547	chr1:72171547:G:A	rs574227541	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr1	73451427	73451428	chr1:73451428:A:C	rs1500429	A	C	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr1	73460888	73460889	chr1:73460889:T:C	rs496819	T	C	T	Sox3.mouse_HMG_3	10	1	-	3.12233903986471	-3.485611601676087	CATAAATTGCATTTATT
chr1	73749844	73749845	chr1:73749845:C:G	rs11210342	C	G	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr1	73762682	73762683	chr1:73762683:G:A	rs6680989	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	73789933	73789934	chr1:73789934:G:A	rs7340110	G	A	g	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr1	74243677	74243678	chr1:74243678:C:A	rs3765651	C	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	74281176	74281177	chr1:74281177:C:G	rs77348319	C	G	C	Sox3.mouse_HMG_3	13	1	+	1.1758296192785431	-5.431430991183477	CATGAGTGGTAGCCAAG
chr1	74811499	74811500	chr1:74811500:A:G	rs149840635	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	75199791	75199792	chr1:75199792:G:A	rs189639842	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	75431323	75431324	chr1:75431324:C:G	rs3914236	C	G	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	75589056	75589057	chr1:75589057:C:T	rs390796	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr1	76037580	76037581	chr1:76037581:A:T	rs4083965	A	T	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	76095846	76095847	chr1:76095847:G:A	rs289678	G	A	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr1	76146367	76146368	chr1:76146368:G:A	rs11162087	G	A	G	Sox3.mouse_HMG_3	7	1	+	2.8735008206295722	-3.6800478940281574	GATGAGAGGCATTCAGA
chr1	76254878	76254879	chr1:76254879:G:A	rs551269	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	76417391	76417392	chr1:76417392:C:T	rs6691055	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	76586910	76586911	chr1:76586911:A:G	rs2117905	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	76659816	76659817	chr1:76659817:T:C	rs2133178	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr1	77028993	77028994	chr1:77028994:T:G	rs199689	T	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	77089795	77089796	chr1:77089796:C:T	rs169216	C	T	T	Sox3.mouse_HMG_3	13	1	+	4.572794072626384	-2.0344665378356357	AATGAATGTCTTTCGTA
chr1	77094514	77094515	chr1:77094515:C:T	rs2069225	C	T	T	Sox3.mouse_HMG_3	13	1	+	0.04157732496099764	-6.565683285501022	GGTGAACATCATTCAAG
chr1	77171110	77171111	chr1:77171111:G:C	rs4399204	G	C	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	77189868	77189869	chr1:77189869:C:T	rs71658785	C	T	C	Sox3.mouse_HMG_3	9	1	+	2.892948118494317	2.900584795486063	CAAGTATTGCAGTCATA
chr1	77394274	77394275	chr1:77394275:G:A	rs6680888	G	A	A	Sox3.mouse_HMG_3	3	1	+	4.918929209351753	-0.8626356781774775	CATGAATTCTTGTCAGA
chr1	77642371	77642372	chr1:77642372:T:C	rs75797076	T	C	T	Sox3.mouse_HMG_3	2	1	+	10.32130155451166	3.7154224362807327	TATGAATGGCATTCCAA
chr1	78070799	78070800	chr1:78070800:C:T	rs11162412	C	T	C	Sox3.mouse_HMG_3	3	1	-	3.497886505281927	-2.283678382247304	TAAGAATTCTATCCAAA
chr1	78277320	78277321	chr1:78277321:T:A	rs71641333	T	A	T	Sox3.mouse_HMG_3	2	1	+	1.8168752933563006	-3.9104534209833206	CATGATTTTCATTCTTT
chr1	78291736	78291737	chr1:78291737:A:G	rs6674660	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	78304417	78304418	chr1:78304418:A:C	rs12085155	A	C	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr1	78490746	78490747	chr1:78490747:T:C	rs3753380	T	C	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr1	78798351	78798352	chr1:78798352:C:T	rs182724607	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	79043423	79043424	chr1:79043424:T:C	rs6687262	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	79204693	79204694	chr1:79204694:A:G	rs228520	A	G	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	79633531	79633532	chr1:79633532:C:T	rs11162765	C	T	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	79812462	79812463	chr1:79812463:A:G	rs7527037	A	G	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr1	79900156	79900157	chr1:79900157:A:G	rs80266529	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr1	79974078	79974079	chr1:79974079:G:A	rs10874103	G	A	G	Sox3.mouse_HMG_3	6	1	+	3.065158469041938	3.065158469041938	TTTAAAGGCTATTCATG
chr1	80048810	80048811	chr1:80048811:A:G	rs7549131	A	G	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	80257945	80257946	chr1:80257946:A:G	rs1418819	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.7652050290958545	-3.8427456124449435	GACGAAGTGCATTCAAA
chr1	80279120	80279121	chr1:80279121:C:T	rs1776289	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr1	80534624	80534625	chr1:80534625:G:A	rs12031573	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr1	80776377	80776378	chr1:80776378:A:T	rs6664492	A	T	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	80780464	80780465	chr1:80780465:T:C	rs12127218	T	C	T	Sox3.mouse_HMG_3	11	1	+	1.2248888174980335	-4.859722008603911	AATGAAGGTCATTGAGA
chr1	81023521	81023522	chr1:81023522:A:G	rs7531507	A	G	G	Sox3.mouse_HMG_3	10	1	+	4.367947529348843	-2.240003112191954	AGTGGATTACATTCAGG
chr1	81142440	81142441	chr1:81142441:C:T	rs72709955	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	81167747	81167748	chr1:81167748:C:A	rs3862252	C	A	A	Sox3.mouse_HMG_3	8	1	+	1.7397958119847665	1.5594618334848844	AATGACTTCTAGCCATT
chr1	81205777	81205778	chr1:81205778:T:A	rs6683111	T	A	A	Sox3.mouse_HMG_3	10	1	-	6.533152890360925	-0.2178985948205452	GATGAATAGTATCCATG
chr1	81351953	81351954	chr1:81351954:T:G	rs1224814054	T	G	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	81371991	81371992	chr1:81371992:G:A	rs77659772	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	81464063	81464064	chr1:81464064:G:A	rs79377360	G	A	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	81478695	81478696	chr1:81478696:T:A	rs4450056	T	A	T	Sox3.mouse_HMG_3	9	1	+	2.7341637834035315	-3.327691518096533	TCTTAATGCTATTCACA
chr1	81682384	81682385	chr1:81682385:G:A	rs11163349	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr1	81800219	81800220	chr1:81800220:G:A	rs3748770	G	A	G	Sox3.mouse_HMG_3	1	1	+	2.8011282268553694	5.901258163292661	TGTGAAATATAGTCAAT
chr1	81805008	81805009	chr1:81805009:T:A	rs709692	T	A	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	81849059	81849060	chr1:81849060:A:G	rs72717776	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	81869505	81869506	chr1:81869506:G:A	rs1405497386	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	82063927	82063928	chr1:82063928:C:T	rs12562339	C	T	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr1	82109114	82109115	chr1:82109115:T:G	rs4970668	T	G	T	Sox3.mouse_HMG_3	2	1	+	5.116139895678542	-1.6328400661930624	TTTGAATGGCATTGAGT
chr1	82239781	82239782	chr1:82239782:G:A	rs10874297	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr1	82244603	82244604	chr1:82244604:A:C	rs7540933	A	C	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	82868760	82868761	chr1:82868761:C:T	rs7550354	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	83164131	83164132	chr1:83164132:T:C	rs401537	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	83251936	83251937	chr1:83251937:T:C	rs9433144	T	C	-	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	83698263	83698264	chr1:83698264:T:C	rs11580318	T	C	C	Sox3.mouse_HMG_3	8	1	-	3.9834076664173566	4.60652431359517	AATGATTTACATTAATG
chr1	83819165	83819166	chr1:83819166:G:A	rs12728131	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr1	84146550	84146551	chr1:84146551:C:G	chr1:84146551:C:G	C	G	C	Sox3.mouse_HMG_3	10	1	-	0.8558672621261265	0.7127664184854532	GAAGAATGTGGTTCATA
chr1	84366436	84366437	chr1:84366437:T:G	rs6669915	T	G	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	84505066	84505067	chr1:84505067:G:A	rs59742045	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	84561159	84561160	chr1:84561160:T:G	rs2994955	T	G	T	Sox3.mouse_HMG_3	13	1	-	3.717173100529918	10.099809774507296	CATGAATGTTCTTAATG
chr1	84672300	84672301	chr1:84672301:A:G	rs12022113	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.5164772354403484	-4.972357686630515	AATAAATTGTGGTCAAG
chr1	84953591	84953592	chr1:84953592:T:A	rs72718785	T	A	T	Sox3.mouse_HMG_3	2	1	+	2.8503193477395454	-2.8770093666000776	GATGAAGGCTATACAGG
chr1	85118524	85118525	chr1:85118525:C:T	rs4559523	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	85329121	85329122	chr1:85329122:G:A	rs371369530	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	85329135	85329136	chr1:85329136:A:G	rs18582	A	G	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	85360194	85360195	chr1:85360195:T:C	rs11805470	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.645767469652389	-0.45436246678490266	CATGAATGTCAGGCTTG
chr1	85408020	85408021	chr1:85408021:G:A	chr1:85408021:G:A	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	85449450	85449451	chr1:85449451:T:C	rs648310	T	C	T	Sox3.mouse_HMG_3	15	1	+	4.495604124775418	-0.21878928693965038	AATGAATAAGAGTCATG
chr1	85449465	85449466	chr1:85449466:A:G	rs659070	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr1	85544414	85544415	chr1:85544415:C:T	rs1524005	C	T	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	85576991	85576992	chr1:85576992:G:C	rs75473693	G	C	-	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	85584139	85584140	chr1:85584140:C:T	rs7543409	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	85708879	85708880	chr1:85708880:T:C	rs1764285	T	C	t	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr1	86061592	86061593	chr1:86061593:T:C	rs78319869	T	C	t	Sox3.mouse_HMG_3	12	1	+	1.8911404624899157	-4.301713104910851	AAAGAATTCCACTCAAT
chr1	86502900	86502901	chr1:86502901:C:G	rs2791480	C	G	c	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	86774988	86774989	chr1:86774989:C:T	rs74097458	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr1	86776278	86776279	chr1:86776279:A:G	rs191739652	A	G	A	Sox3.mouse_HMG_3	1	1	-	1.383896744997602	0.1771140393308026	CTTGAATTAGATGCATG
chr1	86827230	86827231	chr1:86827231:C:T	rs6656882	C	T	C	Sox3.mouse_HMG_3	7	1	-	3.0429064126787164	-3.510642301979013	TAATAATGTCAGTCATT
chr1	86872269	86872270	chr1:86872270:G:T	rs2753282	G	T	G	Sox3.mouse_HMG_3	4	1	-	5.296930437247952	12.04747194536734	CATGCATGATAGTCAAT
chr1	87614114	87614115	chr1:87614115:A:G	rs551461782	A	G	a	Sox3.mouse_HMG_3	4	1	+	4.050317277848448	-2.3324994501456215	AAGTAATGTCATTCATA
chr1	87767062	87767063	chr1:87767063:T:G	rs2436988	T	G	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	87783300	87783301	chr1:87783301:T:C	rs10922505	T	C	T	Sox3.mouse_HMG_3	6	1	+	2.907841621010847	-3.7001090205299505	CATGAATGTTAGTTACT
chr1	87951945	87951946	chr1:87951946:T:C	rs114213933	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	87989481	87989482	chr1:87989482:G:A	rs2991700	G	A	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	88043106	88043107	chr1:88043107:A:G	rs12568243	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	88057715	88057716	chr1:88057716:A:G	rs10923018	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	88141790	88141791	chr1:88141791:G:A	rs60804442	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	88883696	88883697	chr1:88883697:G:A	rs6675893	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	89128644	89128645	chr1:89128645:G:A	rs113595061	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr1	89167170	89167171	chr1:89167171:A:G	rs616098	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	89198286	89198287	chr1:89198287:G:A	rs2224875	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr1	89304751	89304752	chr1:89304752:C:A	rs4658355	C	A	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	89466329	89466330	chr1:89466330:C:T	rs34143251	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	89894268	89894269	chr1:89894269:G:C	rs994557847	G	C	G	Sox3.mouse_HMG_3	11	1	+	2.595386868467508	-2.054787857338631	AATAAATGTTTGTCATT
chr1	89906353	89906354	chr1:89906354:G:T	rs2816850	G	T	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	89907941	89907942	chr1:89907942:C:T	rs77046865	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	90361373	90361374	chr1:90361374:T:C	rs1396315	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	90408970	90408971	chr1:90408971:C:T	rs71666253	C	T	C	Sox3.mouse_HMG_3	1	1	-	5.386271177042272	8.486401113479564	AGTGAGTTGCAGTCATT
chr1	90762474	90762475	chr1:90762475:C:T	rs17131164	C	T	T	Sox3.mouse_HMG_3	6	1	+	5.58603261707259	12.19398325861339	AATAAACGCTATTCATA
chr1	91066605	91066606	chr1:91066606:T:C	rs76742661	T	C	T	Sox3.mouse_HMG_3	16	1	-	1.4883892578738702	1.5243297143263959	AATCATTGCCATTCAGA
chr1	91226716	91226717	chr1:91226717:G:C	rs79561888	G	C	G	Sox3.mouse_HMG_3	8	1	-	0.2753226418989807	0.7181053105769126	GATGACTTCCATTCCCG
chr1	91383661	91383662	chr1:91383662:T:C	rs17131418	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	91452419	91452420	chr1:91452420:T:G	rs6683496	T	G	G	Sox3.mouse_HMG_3	2	1	+	1.3965541288901955	-5.35242583298141	AGTGAATGGCATGCCTT
chr1	91708238	91708239	chr1:91708239:T:C	rs284877	T	C	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	91913276	91913277	chr1:91913277:A:G	rs60229800	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr1	91913285	91913286	chr1:91913286:T:C	rs2770186	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	91913709	91913710	chr1:91913710:T:C	rs1019375551	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	92184771	92184772	chr1:92184772:T:C	rs143556017	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	92301734	92301735	chr1:92301735:A:T	rs6604089	A	T	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr1	92695344	92695345	chr1:92695345:T:C	rs2391199	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	92950584	92950585	chr1:92950585:A:C	rs11164843	A	C	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr1	93078782	93078783	chr1:93078783:A:G	rs367944398	A	G	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	93078790	93078791	chr1:93078791:C:T	rs371855320	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr1	93080257	93080258	chr1:93080258:A:C	chr1:93080258:A:C	A	C	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr1	93219627	93219628	chr1:93219628:C:T	rs183643476	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	93616037	93616038	chr1:93616038:A:T	rs141362372	A	T	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	93639184	93639185	chr1:93639185:C:T	rs236271	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	93639199	93639200	chr1:93639200:T:C	rs236270	T	C	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	93639238	93639239	chr1:93639239:A:G	rs770065997	A	G	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr1	94006718	94006719	chr1:94006719:G:A	rs3789377	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr1	94254296	94254297	chr1:94254297:T:C	rs17111259	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr1	94263531	94263532	chr1:94263532:C:A	rs11165101	C	A	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr1	94335512	94335513	chr1:94335513:A:G	rs1765636	A	G	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	94385018	94385019	chr1:94385019:T:C	rs1765618	T	C	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr1	94543588	94543589	chr1:94543589:A:G	rs958587	A	G	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr1	94591512	94591513	chr1:94591513:A:G	rs36043927	A	G	A	Sox3.mouse_HMG_3	0	1	+	7.103430793019556	7.928714694165901	ATTGAATGCTTTTCATT
chr1	94619701	94619702	chr1:94619702:C:T	rs10782983	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	94627853	94627854	chr1:94627854:C:T	rs17111912	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	94684785	94684786	chr1:94684786:C:A	rs12750395	C	A	c	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	94737655	94737656	chr1:94737656:A:G	rs2933912	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	94792840	94792841	chr1:94792841:C:T	rs146529967	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr1	94792841	94792842	chr1:94792842:G:A	rs948710155	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	94818673	94818674	chr1:94818674:T:C	rs3890118	T	C	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	94884485	94884486	chr1:94884486:A:C	rs117424936	A	C	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	94909187	94909188	chr1:94909188:C:T	rs75059168	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	95084504	95084505	chr1:95084505:T:A	rs12724815	T	A	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	95111353	95111354	chr1:95111354:C:A	rs12565591	C	A	A	Sox3.mouse_HMG_3	7	1	-	1.4784194026808652	0.628386460450795	TGTAAATGTCTTTCATT
chr1	95227199	95227200	chr1:95227200:A:G	rs11165346	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	95229213	95229214	chr1:95229214:G:A	rs11165348	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	95279778	95279779	chr1:95279779:A:G	rs2039615	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr1	95966937	95966938	chr1:95966938:A:C	rs6663724	A	C	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	96190650	96190651	chr1:96190651:C:T	rs321567	C	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	96307193	96307194	chr1:96307194:A:C	rs12119165	A	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	96384901	96384902	chr1:96384902:A:G	rs77310827	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	96519337	96519338	chr1:96519338:G:A	rs3851274	G	A	G	Sox3.mouse_HMG_3	16	1	+	0.6072001034692953	0.5712596470167697	TATGGAAGTCAGTCAGG
chr1	96634384	96634385	chr1:96634385:T:C	rs7521759	T	C	C	Sox3.mouse_HMG_3	1	1	-	1.2824062435722439	-1.817723692865048	TATGCATTATATTCTGG
chr1	97192770	97192771	chr1:97192771:C:A	rs72967809	C	A	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	97212974	97212975	chr1:97212975:G:C	rs138702430	G	C	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	97304353	97304354	chr1:97304354:C:T	rs61786354	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	97368462	97368463	chr1:97368463:C:T	rs1879371	C	T	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	97721491	97721492	chr1:97721492:C:T	rs56276561	C	T	T	Sox3.mouse_HMG_3	16	1	-	0.9528727355208422	0.9169322790683165	TATGTATGATATACACG
chr1	98197404	98197405	chr1:98197405:T:C	rs698994	T	C	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	98268008	98268009	chr1:98268009:G:A	rs76596642	G	A	G	Sox3.mouse_HMG_3	16	1	+	2.4722523179149154	2.4363118614623898	ATTAAATGATATTTATG
chr1	98653346	98653347	chr1:98653347:C:G	rs147382099	C	G	C	Sox3.mouse_HMG_3	3	1	-	3.2033746391472295	-3.546116096557822	CATGAAGTACAATCATA
chr1	98723830	98723831	chr1:98723831:A:G	rs67104941	A	G	.	Sox3.mouse_HMG_3	2	1	-	-0.32327827412963894	-6.929157392360569	GCTGGAGTGCAGTCATG
chr1	98733627	98733628	chr1:98733628:G:A	rs151234770	G	A	G	Sox3.mouse_HMG_3	7	1	+	8.090483378194833	1.5369346635371037	CATGAATGCCTTTCAAG
chr1	98733650	98733651	chr1:98733651:A:G	rs9434444	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr1	98906591	98906592	chr1:98906592:C:A	rs72728602	C	A	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr1	98967820	98967821	chr1:98967821:C:T	rs6677557	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr1	99079324	99079325	chr1:99079325:G:C	rs12731281	G	C	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	99179128	99179129	chr1:99179129:A:G	rs643193	A	G	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	99266645	99266646	chr1:99266646:C:T	rs712895	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr1	99480600	99480601	chr1:99480601:A:G	rs4430354	A	G	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr1	99481383	99481384	chr1:99481384:A:G	rs17120498	A	G	A	Sox3.mouse_HMG_3	6	1	-	3.3765960260376255	-3.2313546155031716	TATAAATTGTAGGCATT
chr1	99515748	99515749	chr1:99515749:A:G	rs947508450	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr1	99546666	99546667	chr1:99546667:C:T	rs1361380	C	T	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	99733582	99733583	chr1:99733583:G:A	rs2105181	G	A	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	99769828	99769829	chr1:99769829:G:A	rs7549299	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	99801601	99801602	chr1:99801602:T:G	rs958897	T	G	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	99820995	99820996	chr1:99820996:A:T	rs3920022	A	T	A	Sox3.mouse_HMG_3	0	1	-	1.2415375678577627	0.6851745205111728	TATGAATGTCTGTTAAG
chr1	100133474	100133475	chr1:100133475:G:A	rs116377124	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr1	100133485	100133486	chr1:100133486:C:T	rs180896719	C	T	C	Sox3.mouse_HMG_3	8	1	+	3.187287074882971	2.925167329966865	TATGAGTTCTAGTGATG
chr1	100785907	100785908	chr1:100785908:G:C	rs12094357	G	C	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	100801454	100801455	chr1:100801455:G:A	rs114820491	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	100831041	100831042	chr1:100831042:A:G	rs61780265	A	G	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	100931186	100931187	chr1:100931187:G:T	rs11579723	G	T	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	101021907	101021908	chr1:101021908:C:T	rs1047859672	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	101203319	101203320	chr1:101203320:T:C	rs7542187	T	C	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	101552362	101552363	chr1:101552363:T:C	rs62635802	T	C	c	Sox3.mouse_HMG_3	0	1	+	3.362039702206138	1.9071690568692734	TATGTATTATATGCATT
chr1	101738425	101738426	chr1:101738426:G:A	rs12126242	G	A	G	Sox3.mouse_HMG_3	4	1	-	3.4617663961865075	3.60486723982718	TATTCATGTTATTCATT
chr1	101975082	101975083	chr1:101975083:A:G	rs945645	A	G	A	Sox3.mouse_HMG_3	12	1	-	2.117499646882552	-4.075353920518214	TATGATTTACTTTCATC
chr1	102047877	102047878	chr1:102047878:A:C	rs7538733	A	C	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr1	103064766	103064767	chr1:103064767:A:T	rs12733029	A	T	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	103199519	103199520	chr1:103199520:T:C	rs4360545	T	C	C	Sox3.mouse_HMG_3	1	1	-	2.626830256387043	-0.47329968005025047	TATGATATTTAGTCATA
chr1	103930466	103930467	chr1:103930467:T:C	rs11185336	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr1	104124808	104124809	chr1:104124809:A:G	rs17476140	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	104402227	104402228	chr1:104402228:C:T	rs7538850	C	T	c	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	104862575	104862576	chr1:104862576:C:T	rs12062067	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	105407888	105407889	chr1:105407889:C:T	rs1829117	C	T	c	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr1	105655817	105655818	chr1:105655818:C:A	rs1361465	C	A	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	106304327	106304328	chr1:106304328:C:T	rs1855472	C	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	106375751	106375752	chr1:106375752:T:G	rs7516671	T	G	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	106413436	106413437	chr1:106413437:A:C	rs12067715	A	C	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	106955042	106955043	chr1:106955043:A:G	rs6582999	A	G	G	Sox3.mouse_HMG_3	2	1	-	1.0871387810214448	-5.518740337209485	GGTTAATTGTAGTCACT
chr1	107183120	107183121	chr1:107183121:C:A	rs4311917	C	A	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	107263004	107263005	chr1:107263005:A:G	rs12145076	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	107593683	107593684	chr1:107593684:G:A	rs191089188	G	A	G	Sox3.mouse_HMG_3	13	1	-	2.538490339271641	-4.068770271190379	TATGCATTTTATACATC
chr1	108467607	108467608	chr1:108467608:G:A	rs201618980	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr1	108694260	108694261	chr1:108694261:T:C	rs534994964	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	108858394	108858395	chr1:108858395:A:C	rs6604132	A	C	C	Sox3.mouse_HMG_3	8	1	-	3.042090914632193	3.746993328226231	TGTAAATGTTATTCTTG
chr1	109043719	109043720	chr1:109043720:A:G	rs149163755	A	G	a	Sox3.mouse_HMG_3	1	1	+	1.0303503965095566	-2.0697795399277363	AATGAAATCCTGTCATT
chr1	109133304	109133305	chr1:109133305:A:C	rs17038454	A	C	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	109198349	109198350	chr1:109198350:C:T	rs56903700	C	T	C	Sox3.mouse_HMG_3	12	1	+	0.6766283339825665	6.869481901383333	AGTGTATGCTAGCCATG
chr1	109257457	109257458	chr1:109257458:A:G	rs79551419	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr1	109292540	109292541	chr1:109292541:C:T	rs41306199	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	109425787	109425788	chr1:109425788:A:C	rs3820667	A	C	A	Sox3.mouse_HMG_3	1	1	-	1.298367846672657	1.1683147184244598	TTAGAATGGTTTTCAAG
chr1	109736979	109736980	chr1:109736980:T:G	rs2234696	T	G	T	Sox3.mouse_HMG_3	2	1	+	3.655651678799752	-3.09332828307185	CATAAGTGCTATTCATT
chr1	109739318	109739319	chr1:109739319:G:A	rs10735234	G	A	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr1	109980835	109980836	chr1:109980836:C:G	rs905841303	C	G	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	110135089	110135090	chr1:110135090:A:G	rs7518585	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	110153580	110153581	chr1:110153581:A:G	rs12742838	A	G	a	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	110340004	110340005	chr1:110340005:A:G	rs61746123	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	110777880	110777881	chr1:110777881:G:A	rs479049	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	110777910	110777911	chr1:110777911:T:C	rs471734	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	110964618	110964619	chr1:110964619:G:T	rs115687372	G	T	G	Sox3.mouse_HMG_3	8	1	+	2.018768971023272	1.3138665574292347	CATCCATTGTATTCATT
chr1	111008065	111008066	chr1:111008066:T:C	rs57353404	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	111211993	111211994	chr1:111211994:T:C	rs2783442	T	C	T	Sox3.mouse_HMG_3	5	1	-	1.752947248477006	-4.735887673593858	GGTAAATTGTGTTCATT
chr1	111253060	111253061	chr1:111253061:G:A	rs4839109	G	A	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	111384186	111384187	chr1:111384187:T:A	rs17027572	T	A	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	111513489	111513490	chr1:111513490:T:G	rs79006432	T	G	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr1	111530966	111530967	chr1:111530967:A:C	rs11102300	A	C	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr1	111530987	111530988	chr1:111530988:T:C	rs11102301	T	C	C	Sox3.mouse_HMG_3	12	1	+	2.4832194356842834	-3.7096341317164834	TATGAAGTTTTGTCATA
chr1	111601276	111601277	chr1:111601277:G:C	rs2789546	G	C	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	111605144	111605145	chr1:111605145:C:T	rs2247378	C	T	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr1	111827983	111827984	chr1:111827984:A:G	rs1904200	A	G	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	111932897	111932898	chr1:111932898:A:G	rs11102356	A	G	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	111932926	111932927	chr1:111932927:C:T	rs11102357	C	T	C	Sox3.mouse_HMG_3	7	1	-	8.896337659208914	2.3427889445511862	GATGAATGAAAGTCAAG
chr1	111955627	111955628	chr1:111955628:A:G	rs10745322	A	G	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr1	112012776	112012777	chr1:112012777:A:G	rs56131862	A	G	a	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	112012800	112012801	chr1:112012801:G:A	rs12562249	G	A	G	Sox3.mouse_HMG_3	7	1	+	3.4020266310135856	-3.151522083644143	TAAGAAGGGCATTCAGG
chr1	112143776	112143777	chr1:112143777:C:T	rs76618552	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	112179292	112179293	chr1:112179293:G:A	rs11102404	G	A	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr1	112234246	112234247	chr1:112234247:C:T	rs6671600	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	112734767	112734768	chr1:112734768:A:G	rs61127378	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	112889821	112889822	chr1:112889822:C:T	rs10158127	C	T	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr1	112907382	112907383	chr1:112907383:A:C	rs1936311	A	C	C	Sox3.mouse_HMG_3	4	1	+	2.963894838239888	-3.786646669879498	TCTGAATGTTGGTCAGG
chr1	112971148	112971149	chr1:112971149:A:G	rs12079268	A	G	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	113256100	113256101	chr1:113256101:G:A	rs773612	G	A	G	Sox3.mouse_HMG_3	14	1	+	2.2208905616848424	8.602836728111754	AGTGAATGACAATCGTA
chr1	113302836	113302837	chr1:113302837:G:A	rs773590	G	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr1	113303773	113303774	chr1:113303774:A:G	rs773591	A	G	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	115091680	115091681	chr1:115091681:G:A	rs79372788	G	A	G	Sox3.mouse_HMG_3	8	1	+	2.3022067605899483	1.679090113412135	TCTGGATGGTATACATA
chr1	115135751	115135752	chr1:115135752:C:A	rs1977304	C	A	C	Sox3.mouse_HMG_3	6	1	-	1.7754847841108248	8.526536269292293	TATGAAGTACAGTCCTT
chr1	115217965	115217966	chr1:115217966:T:C	rs1294382	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	115497260	115497261	chr1:115497261:G:A	rs112974957	G	A	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	115501732	115501733	chr1:115501733:C:A	rs1543594	C	A	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	115714626	115714627	chr1:115714627:A:G	rs80144819	A	G	A	Sox3.mouse_HMG_3	15	1	-	5.167169099735367	0.4527756880202989	TAGGAATGTCATTCCTG
chr1	115893521	115893522	chr1:115893522:A:G	rs2131440	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	115979743	115979744	chr1:115979744:C:T	rs1689117	C	T	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	116018089	116018090	chr1:116018090:T:A	rs1994830	T	A	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr1	116132161	116132162	chr1:116132162:G:A	rs76951245	G	A	G	Sox3.mouse_HMG_3	13	1	-	2.9480047422573783	-3.6592558682046414	TATGAATGACTTGCAAA
chr1	116226371	116226372	chr1:116226372:A:G	rs12403049	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr1	116286913	116286914	chr1:116286914:A:G	rs114999778	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr1	116376896	116376897	chr1:116376897:C:T	rs10924073	C	T	T	Sox3.mouse_HMG_3	13	1	+	4.439919731986512	-2.1673408784755077	CCTAAATTGCATTCAAA
chr1	116510599	116510600	chr1:116510600:T:C	chr1:116510600:T:C	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	116923427	116923428	chr1:116923428:T:A	rs2250439	T	A	a	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	116991024	116991025	chr1:116991025:C:T	rs79634644	C	T	C	Sox3.mouse_HMG_3	11	1	-	3.9916065738384257	-0.6585681519677115	GAAGAGTGCCAGTCATT
chr1	116991042	116991043	chr1:116991043:T:C	rs149646098	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	117181008	117181009	chr1:117181009:C:T	rs2185815	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	117181956	117181957	chr1:117181957:G:A	rs116793883	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	117347756	117347757	chr1:117347757:C:T	rs10923268	C	T	C	Sox3.mouse_HMG_3	7	1	-	2.7805216033540523	-3.7730271113036755	AAGCAATGTTAGTCATA
chr1	117363185	117363186	chr1:117363186:G:A	rs6666379	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	117507739	117507740	chr1:117507740:A:G	rs2790033	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	117605870	117605871	chr1:117605871:C:T	chr1:117605871:C:T	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	117635477	117635478	chr1:117635478:A:C	rs4659335	A	C	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr1	117820807	117820808	chr1:117820808:G:A	rs2104044	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	117930415	117930416	chr1:117930416:G:C	rs1321663	G	C	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	118256606	118256607	chr1:118256607:C:T	rs12081441	C	T	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	118550015	118550016	chr1:118550016:T:C	rs10923607	T	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	118550017	118550018	chr1:118550018:T:C	rs10923608	T	C	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	118565002	118565003	chr1:118565003:C:G	rs12128952	C	G	C	Sox3.mouse_HMG_3	15	1	-	10.524254477465508	8.932451876843682	TCTGAATGGTATTCAGT
chr1	118636279	118636280	chr1:118636280:T:G	rs1742838	T	G	G	Sox3.mouse_HMG_3	15	1	+	4.243850726375921	1.12125991528268	GATTAATTGCACTCATT
chr1	118954530	118954531	chr1:118954531:G:C	rs12143789	G	C	G	Sox3.mouse_HMG_3	10	1	-	1.5530465705143612	1.6961474141550346	AGTGAATGCTCTTGATG
chr1	119011782	119011783	chr1:119011783:T:C	rs77313534	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	119280186	119280187	chr1:119280187:G:A	chr1:119280187:G:A	G	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	119298969	119298970	chr1:119298970:C:G	rs1418023	C	G	C	Sox3.mouse_HMG_3	11	1	-	2.5359577652717196	-2.1142169605344185	AATTGATGGCAGTCATT
chr1	119372084	119372085	chr1:119372085:G:T	rs116269557	G	T	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	119587054	119587055	chr1:119587055:C:A	rs346675	C	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	119712954	119712955	chr1:119712955:C:G	rs839615	C	G	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	119714952	119714953	chr1:119714953:A:G	rs477992	A	G	G	Sox3.mouse_HMG_3	5	1	+	1.1461513959539513	-5.3426835261169145	AATGAACCTCAGTCAAA
chr1	119792229	119792230	chr1:119792230:G:A	rs12747679	G	A	g	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	119875875	119875876	chr1:119875876:G:T	rs6683791	G	T	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	121293591	121293592	chr1:121293592:G:A	rs587635285	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	121485183	121485184	chr1:121485184:G:T	rs2319971	G	T	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	125080226	125080227	chr1:125080227:C:T	rs1263934055	C	T	.	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	125080879	125080880	chr1:125080880:C:A	rs1219494200	C	A	.	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr1	125080881	125080882	chr1:125080882:T:C	rs1320009693	T	C	.	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	125150071	125150072	chr1:125150072:C:T	rs917215021	C	T	.	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	125177353	125177354	chr1:125177354:G:A	rs1268329868	G	A	.	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr1	125181646	125181647	chr1:125181647:T:G	rs1429032526	T	G	.	Sox3.mouse_HMG_3	14	1	-	1.7105692007791857	-4.671376965647725	AATGAATTGAATGCAAT
chr1	143195371	143195372	chr1:143195372:G:A	rs1194916822	G	A	.	Sox3.mouse_HMG_3	8	1	+	1.7105692007791857	1.087452553601373	AATGAATTGAATGCAAT
chr1	143232211	143232212	chr1:143232212:A:T	rs1308935306	A	T	.	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr1	143264311	143264312	chr1:143264312:T:A	chr1:143264312:T:A	T	A	.	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	145891366	145891367	chr1:145891367:G:A	rs77450491	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	145899154	145899155	chr1:145899155:G:A	rs2274617	G	A	G	Sox3.mouse_HMG_3	0	1	+	3.6383192802600277	2.813035379113684	GATGCATTTTAGTCACT
chr1	147027141	147027142	chr1:147027142:G:C	rs6704429	G	C	.	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	147027145	147027146	chr1:147027146:G:A	rs11587105	G	A	.	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	147082772	147082773	chr1:147082773:C:A	rs71510558	C	A	.	Sox3.mouse_HMG_3	12	1	+	3.8559049927241578	3.935947700397694	GATGAAGTCTATCCATT
chr1	147111985	147111986	chr1:147111986:G:A	rs6686480	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr1	147111986	147111987	chr1:147111987:A:T	rs6700783	A	T	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	147379857	147379858	chr1:147379858:G:A	rs12041474	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	147590781	147590782	chr1:147590782:T:C	rs2132441	T	C	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr1	147649263	147649264	chr1:147649264:C:T	rs144300902	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr1	150213279	150213280	chr1:150213280:T:C	rs73009583	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	150364812	150364813	chr1:150364813:G:T	rs72696841	G	T	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	150477727	150477728	chr1:150477728:T:C	rs12136802	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr1	150512078	150512079	chr1:150512079:C:G	rs875514	C	G	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	150528447	150528448	chr1:150528448:G:A	rs79159490	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	150836639	150836640	chr1:150836640:C:T	rs10305695	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	150863962	150863963	chr1:150863963:T:C	rs12406660	T	C	t	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	150935478	150935479	chr1:150935479:A:G	rs4970986	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	151027386	151027387	chr1:151027387:A:G	rs55717234	A	G	A	Sox3.mouse_HMG_3	14	1	+	5.174115550584332	-1.207830615842578	TATGCATGTTATGCATG
chr1	151639650	151639651	chr1:151639651:C:T	rs897535920	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	151788695	151788696	chr1:151788696:A:G	rs12756855	A	G	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	151953980	151953981	chr1:151953981:C:T	rs6682605	C	T	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	152000033	152000034	chr1:152000034:T:C	rs2999558	T	C	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	152708243	152708244	chr1:152708244:A:G	rs12033945	A	G	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	152858237	152858238	chr1:152858238:A:G	rs58021079	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	153349553	153349554	chr1:153349554:A:C	rs3006464	A	C	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	153349564	153349565	chr1:153349565:G:A	rs12057777	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr1	153399518	153399519	chr1:153399519:A:T	rs61803109	A	T	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	153452531	153452532	chr1:153452532:T:C	rs6700785	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	153532386	153532387	chr1:153532387:A:G	rs114719191	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	153912784	153912785	chr1:153912785:C:A	rs4845584	C	A	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr1	154432652	154432653	chr1:154432653:C:T	rs114645658	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	154544000	154544001	chr1:154544001:G:A	rs12750774	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	154635437	154635438	chr1:154635438:G:A	rs9427108	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	154720527	154720528	chr1:154720528:T:C	rs77510509	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	154768880	154768881	chr1:154768881:T:C	rs56033137	T	C	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr1	154822556	154822557	chr1:154822557:T:C	rs56744813	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	154913302	154913303	chr1:154913303:C:T	rs4240874	C	T	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr1	154913305	154913306	chr1:154913306:G:A	rs4240875	G	A	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	154935781	154935782	chr1:154935782:C:A	rs11581175	C	A	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr1	154935783	154935784	chr1:154935784:G:A	rs115965048	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	155227209	155227210	chr1:155227210:C:T	rs1054961668	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	155718788	155718789	chr1:155718789:C:A	rs821551	C	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	155873986	155873987	chr1:155873987:A:G	rs822515	A	G	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	156295673	156295674	chr1:156295674:T:C	rs375282431	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	156295695	156295696	chr1:156295696:C:T	rs756670758	C	T	c	Sox3.mouse_HMG_3	7	1	-	1.2699605636826796	-5.283588150975048	GCTGAACGCGAGTCATG
chr1	156392618	156392619	chr1:156392619:C:T	rs7520623	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr1	156392620	156392621	chr1:156392621:G:A	rs7542524	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	156414060	156414061	chr1:156414061:C:T	rs892861784	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	156464910	156464911	chr1:156464911:G:T	rs1050316	G	T	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	156498899	156498900	chr1:156498900:A:T	rs72994652	A	T	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	156649342	156649343	chr1:156649343:A:T	rs4233512	A	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	156655779	156655780	chr1:156655780:T:C	rs10796963	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	157046738	157046739	chr1:157046739:G:A	rs149347138	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	157158261	157158262	chr1:157158262:G:A	rs6658122	G	A	N	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	157158267	157158268	chr1:157158268:C:A	rs6683349	C	A	N	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr1	157630361	157630362	chr1:157630362:T:C	rs2758627	T	C	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	157705206	157705207	chr1:157705207:G:T	rs2317230	G	T	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	157775993	157775994	chr1:157775994:T:C	rs185904790	T	C	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	157846606	157846607	chr1:157846607:C:T	rs74121555	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	157962308	157962309	chr1:157962309:C:G	rs145422725	C	G	C	Sox3.mouse_HMG_3	1	1	-	0.08197907282600325	-0.9947505045925988	GGTGAATGGGAGCCAGG
chr1	158145129	158145130	chr1:158145130:G:A	rs142724279	G	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	158495150	158495151	chr1:158495151:C:T	rs1259002340	C	T	C	Sox3.mouse_HMG_3	2	1	-	3.326088388813468	4.347739636345449	AAGCAATGCTATTCATT
chr1	159000633	159000634	chr1:159000634:A:G	rs74230313	A	G	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	159215537	159215538	chr1:159215538:G:T	rs35105792	G	T	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr1	159261978	159261979	chr1:159261979:T:A	rs72633670	T	A	T	Sox3.mouse_HMG_3	12	1	+	0.49346080540811266	-5.619350054319117	CAGGACTGGCAGTCAAG
chr1	159748612	159748613	chr1:159748613:C:T	rs12064000	C	T	C	Sox3.mouse_HMG_3	7	1	-	1.1136302387504755	-5.439918475907253	GCTGAAAGACATTTATG
chr1	159823952	159823953	chr1:159823953:C:G	rs1406700169	C	G	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr1	159922415	159922416	chr1:159922416:C:T	rs553143835	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr1	160017712	160017713	chr1:160017713:T:C	rs73019671	T	C	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	160077783	160077784	chr1:160077784:C:G	rs60703279	C	G	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr1	160338909	160338910	chr1:160338910:C:T	rs74123122	C	T	T	Sox3.mouse_HMG_3	11	1	-	0.2675431899963132	-4.382631535809826	TGTGATTTGTCGTCATG
chr1	160379833	160379834	chr1:160379834:A:G	rs12028921	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	160379850	160379851	chr1:160379851:C:T	rs12407581	C	T	C	Sox3.mouse_HMG_3	7	1	-	0.5326770794798803	-6.020871635177849	AAGGAACGGCAGTCAGG
chr1	160379867	160379868	chr1:160379868:T:G	rs12029682	T	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr1	160403367	160403368	chr1:160403368:C:T	rs16831949	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr1	160520354	160520355	chr1:160520355:T:C	rs79523928	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	160723761	160723762	chr1:160723762:T:C	rs72708901	T	C	T	Sox3.mouse_HMG_3	0	1	+	3.65968022058931	2.2048095752524457	TCTGAATTCCCTTCAGG
chr1	160876493	160876494	chr1:160876494:T:G	rs1333062	T	G	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	160877273	160877274	chr1:160877274:G:A	rs17387157	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	161382997	161382998	chr1:161382998:C:G	rs115144569	C	G	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr1	161402287	161402288	chr1:161402288:C:T	rs58514620	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	161621054	161621055	chr1:161621055:A:C	rs144626514	A	C	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	161730440	161730441	chr1:161730441:T:C	rs1503809	T	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	161986013	161986014	chr1:161986014:C:T	rs2341465	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	162064099	162064100	chr1:162064100:C:T	rs12143842	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr1	162093232	162093233	chr1:162093233:G:A	rs1337062	G	A	g	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr1	162386679	162386680	chr1:162386680:A:G	rs3738395	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	162470343	162470344	chr1:162470344:G:T	rs164173	G	T	t	Sox3.mouse_HMG_3	13	1	-	0.7430525545775963	-5.639584119399781	TAAAAATGGCTTTCATG
chr1	162832824	162832825	chr1:162832825:C:A	rs2684879	C	A	C	Sox3.mouse_HMG_3	10	1	+	2.4968558360293365	9.247907321210807	AAAGAATTGCCGTCATT
chr1	162916576	162916577	chr1:162916577:T:A	rs79274705	T	A	T	Sox3.mouse_HMG_3	6	1	+	2.65418667006841	-4.096864815113063	TATGAATGATATCCTGA
chr1	162943797	162943798	chr1:162943798:G:A	rs115229609	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	163116160	163116161	chr1:163116161:A:T	rs2841982	A	T	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	163172377	163172378	chr1:163172378:A:G	rs10917690	A	G	A	Sox3.mouse_HMG_3	14	1	+	2.8876227996432613	-3.4943233667836493	TATAAATGGTAGTTAAA
chr1	163186927	163186928	chr1:163186928:A:G	rs4657250	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr1	163565492	163565493	chr1:163565493:T:C	rs2486834	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	163697456	163697457	chr1:163697457:G:A	rs16858383	G	A	A	Sox3.mouse_HMG_3	9	1	-	2.0511210123148915	2.0587576893066375	CCTGAATTACAGACAAA
chr1	163704007	163704008	chr1:163704008:A:G	rs12566429	A	G	A	Sox3.mouse_HMG_3	10	1	+	6.461721650769108	-0.14622899077168983	AGTGAACTGTAGTCATG
chr1	163870845	163870846	chr1:163870846:C:T	rs78257712	C	T	-	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	164420114	164420115	chr1:164420115:G:A	rs116018319	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	164476179	164476180	chr1:164476180:T:C	rs16831386	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr1	164560892	164560893	chr1:164560893:A:G	rs3767374	A	G	A	Sox3.mouse_HMG_3	12	1	+	3.548697976401285	3.280433989806605	TATGAATTTTATATATT
chr1	164564365	164564366	chr1:164564366:C:T	rs8179321	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	164564588	164564589	chr1:164564589:T:C	rs79753189	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	164588164	164588165	chr1:164588165:G:C	rs78139946	G	C	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	164588218	164588219	chr1:164588219:C:T	rs989668993	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	164656458	164656459	chr1:164656459:G:T	rs12047043	G	T	G	Sox3.mouse_HMG_3	8	1	-	1.695210642357268	1.5148766638573867	GATGAATTCTTTTCTGA
chr1	164913495	164913496	chr1:164913496:G:T	rs4347190	G	T	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	165034224	165034225	chr1:165034225:C:T	rs11589386	C	T	C	Sox3.mouse_HMG_3	16	1	-	3.1746376394201863	3.1386971829676606	AGTGACTTGCATTCACG
chr1	165228767	165228768	chr1:165228768:A:G	chr1:165228768:A:G	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	165514362	165514363	chr1:165514363:C:A	rs285478	C	A	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr1	165853653	165853654	chr1:165853654:T:C	rs4657481	T	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	165940928	165940929	chr1:165940929:T:C	rs16853604	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	165942362	165942363	chr1:165942363:T:C	rs16853627	T	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	166096868	166096869	chr1:166096869:C:G	rs80151345	C	G	G	Sox3.mouse_HMG_3	9	1	+	-0.2903485798582246	-5.630277587232788	GGTGGATGGCAGGCAAG
chr1	166096870	166096871	chr1:166096871:G:A	rs10800185	G	A	G	Sox3.mouse_HMG_3	11	1	+	-0.2903485798582246	-4.940523305664363	GGTGGATGGCAGGCAAG
chr1	166291273	166291274	chr1:166291274:A:G	rs919678	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	166556477	166556478	chr1:166556478:A:G	rs6675681	A	G	A	Sox3.mouse_HMG_3	16	1	+	4.354064959994702	4.390005416447227	AAAGAATTTGAGTCATA
chr1	166805065	166805066	chr1:166805066:A:G	rs12131167	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	166859069	166859070	chr1:166859070:C:A	rs4657607	C	A	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr1	167186644	167186645	chr1:167186645:T:G	rs12117127	T	G	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	167427892	167427893	chr1:167427893:C:T	rs56805102	C	T	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	167441153	167441154	chr1:167441154:T:C	rs2280635	T	C	T	Sox3.mouse_HMG_3	6	1	+	6.812998179890564	0.2050475383497672	GATGAATGGTACTCCTG
chr1	167516524	167516525	chr1:167516525:T:A	rs1737501	T	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	167536657	167536658	chr1:167536658:T:C	rs10489191	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr1	167709166	167709167	chr1:167709167:T:C	rs12119888	T	C	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	167822089	167822090	chr1:167822090:T:C	rs61737676	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr1	167852974	167852975	chr1:167852975:T:C	rs3767457	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr1	167904763	167904764	chr1:167904764:G:C	rs7545974	G	C	g	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	167904816	167904817	chr1:167904817:A:G	rs1343261551	A	G	a	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	168010998	168010999	chr1:168010999:T:A	rs73026173	T	A	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	168138804	168138805	chr1:168138805:A:G	rs1406822	A	G	G	Sox3.mouse_HMG_3	1	1	-	1.46287692808071	0.25609422241391	ATTGAATTCTGCTCATA
chr1	168340808	168340809	chr1:168340809:A:G	rs12128782	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	168466293	168466294	chr1:168466294:G:A	rs192351415	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	168599072	168599073	chr1:168599073:C:T	rs114600796	C	T	C	Sox3.mouse_HMG_3	8	1	+	1.7960663105318506	1.5339465656157447	CATAAATGCTACTCAAT
chr1	168636978	168636979	chr1:168636979:G:A	rs12024098	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	168636982	168636983	chr1:168636983:G:A	chr1:168636983:G:A	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	168709675	168709676	chr1:168709676:G:A	rs686226	G	A	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	168720109	168720110	chr1:168720110:A:C	rs61801596	A	C	A	Sox3.mouse_HMG_3	10	1	+	1.9217904171286906	-4.829261068052781	CATGAGTTCTAGTCCTA
chr1	168723376	168723377	chr1:168723377:C:A	rs11590043	C	A	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr1	168783883	168783884	chr1:168783884:T:C	rs926432	T	C	C	Sox3.mouse_HMG_3	0	1	-	10.895157779390267	11.72044168053661	AGTGAATTCCATTCAGA
chr1	168861276	168861277	chr1:168861277:T:C	rs533218643	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	168894410	168894411	chr1:168894411:A:T	rs114383479	A	T	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	168961000	168961001	chr1:168961001:G:A	rs141607809	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr1	168961016	168961017	chr1:168961017:C:T	rs6674703	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	169000015	169000016	chr1:169000016:T:A	rs35990973	T	A	T	Sox3.mouse_HMG_3	14	1	-	1.9461103200414578	-4.435835846385452	TTTGAATGGCTGTCACT
chr1	169031667	169031668	chr1:169031668:T:C	rs112984988	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	169041815	169041816	chr1:169041816:G:A	rs35753880	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr1	169146582	169146583	chr1:169146583:G:A	rs12086104	G	A	G	Sox3.mouse_HMG_3	13	1	-	5.51660651515187	-1.0906540953101502	TTTGAAATATATTCAAA
chr1	169146594	169146595	chr1:169146595:A:G	rs10919075	A	G	A	Sox3.mouse_HMG_3	1	1	-	5.51660651515187	4.30982380948507	TTTGAAATATATTCAAA
chr1	169194004	169194005	chr1:169194005:G:A	rs4140540	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	169281752	169281753	chr1:169281753:A:G	rs113799014	A	G	A	Sox3.mouse_HMG_3	14	1	+	2.5297013983396686	-3.852244768087242	GATGAATTACGTTTATC
chr1	169486464	169486465	chr1:169486465:C:T	rs72706085	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr1	169610027	169610028	chr1:169610028:G:A	rs3917740	G	A	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	169734327	169734328	chr1:169734328:A:C	rs3917396	A	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	169999278	169999279	chr1:169999279:C:G	rs541896	C	G	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	169999303	169999304	chr1:169999304:T:C	rs74767340	T	C	T	Sox3.mouse_HMG_3	1	1	-	3.2931252149430774	0.1929952785057849	TATGGCTTCTAGTCATG
chr1	170420373	170420374	chr1:170420374:A:G	rs12145296	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.4904066333800177	-3.2239867783350507	TCTGATTGATATACATG
chr1	170538423	170538424	chr1:170538424:G:A	rs6676081	G	A	a	Sox3.mouse_HMG_3	10	1	+	1.757248211276947	8.365198852817745	TATGAATGTGGGTCAGA
chr1	170538433	170538434	chr1:170538434:T:C	rs6688821	T	C	t	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr1	170593424	170593425	chr1:170593425:C:T	rs116080166	C	T	C	Sox3.mouse_HMG_3	15	1	-	1.9413944682473152	2.800175815103736	AATAAAATGCATTCAGG
chr1	170637523	170637524	chr1:170637524:G:A	rs6427267	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	170835987	170835988	chr1:170835988:G:C	rs6686567	G	C	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr1	171084140	171084141	chr1:171084141:G:C	rs77786968	G	C	G	Sox3.mouse_HMG_3	9	1	-	2.889049602983275	-2.45087940439129	AATCCATGACAGTCATG
chr1	171110317	171110318	chr1:171110318:C:T	rs28363562	C	T	C	Sox3.mouse_HMG_3	16	1	-	6.835766634498303	6.799826178045778	ACTGAATTCTAGTCACG
chr1	171237396	171237397	chr1:171237397:A:G	rs59910498	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	171252884	171252885	chr1:171252885:T:G	rs4073693	T	G	T	Sox3.mouse_HMG_3	8	1	+	2.484976275552162	3.1898786891462	AATGAATCTCAGTCTTT
chr1	171285654	171285655	chr1:171285655:C:T	rs12954	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr1	171916606	171916607	chr1:171916607:G:A	rs2901603	G	A	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	172042769	172042770	chr1:172042770:C:T	rs10910968	C	T	C	Sox3.mouse_HMG_3	3	1	-	0.7280524071742334	-5.053512480354999	TCTGAATTCACTTCATG
chr1	172163877	172163878	chr1:172163878:T:C	rs796136719	T	C	-	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	172203326	172203327	chr1:172203327:C:A	rs11589142	C	A	C	Sox3.mouse_HMG_3	9	1	+	1.389104212833065	-4.665114411675254	GTTGCATTTCATTGATG
chr1	172219583	172219584	chr1:172219584:A:G	rs520918	A	G	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	172321405	172321406	chr1:172321406:G:C	rs73046825	G	C	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr1	172399826	172399827	chr1:172399827:T:C	rs6698987	T	C	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	172415925	172415926	chr1:172415926:G:A	rs12045369	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	172628412	172628413	chr1:172628413:T:C	rs12021702	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	172671943	172671944	chr1:172671944:A:T	rs959217478	A	T	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr1	172745241	172745242	chr1:172745242:C:G	rs750489659	C	G	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	172745247	172745248	chr1:172745248:C:T	rs570874730	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	172745265	172745266	chr1:172745266:C:T	rs140839639	C	T	C	Sox3.mouse_HMG_3	5	1	-	1.7545470245997465	8.24338194667061	TATGAGTTGCTTTCAGA
chr1	172859339	172859340	chr1:172859340:A:C	rs17371133	A	C	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr1	172886435	172886436	chr1:172886436:A:G	rs68143871	A	G	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr1	172890051	172890052	chr1:172890052:C:T	rs12122161	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	172893843	172893844	chr1:172893844:C:T	rs11801183	C	T	C	Sox3.mouse_HMG_3	15	1	-	8.724771929770185	9.583553276626606	TTTGAATGTTAGTCAGC
chr1	172938882	172938883	chr1:172938883:G:T	rs77227319	G	T	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	173044831	173044832	chr1:173044832:G:A	rs114146772	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr1	173044842	173044843	chr1:173044843:A:T	rs67164519	A	T	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	173444944	173444945	chr1:173444945:C:T	rs141846315	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	173445044	173445045	chr1:173445045:T:C	rs7549074	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr1	173518784	173518785	chr1:173518785:G:T	rs12080722	G	T	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	174115811	174115812	chr1:174115812:A:G	chr1:174115812:A:G	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	174115816	174115817	chr1:174115817:C:G	chr1:174115817:C:G	C	G	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	174220265	174220266	chr1:174220266:T:G	rs56338048	T	G	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr1	174359662	174359663	chr1:174359663:A:G	rs10489256	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	174627901	174627902	chr1:174627902:A:G	rs12065825	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr1	174790519	174790520	chr1:174790520:G:A	rs115071894	G	A	g	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr1	174872245	174872246	chr1:174872246:A:G	rs534851103	A	G	A	Sox3.mouse_HMG_3	10	1	+	1.1463481588861755	-5.461602482654621	AATGGCTGGTATTCAAC
chr1	174976977	174976978	chr1:174976978:G:A	rs80050604	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	175089325	175089326	chr1:175089326:A:C	rs17302688	A	C	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	175133101	175133102	chr1:175133102:A:G	rs1476061	A	G	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr1	175225253	175225254	chr1:175225254:T:C	rs10798348	T	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr1	175431106	175431107	chr1:175431107:T:C	rs2859047	T	C	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	175480644	175480645	chr1:175480645:C:T	rs859416	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr1	175660960	175660961	chr1:175660961:T:C	rs10913052	T	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr1	175897184	175897185	chr1:175897185:C:G	rs1000382	C	G	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	175919602	175919603	chr1:175919603:A:G	rs12753832	A	G	a	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	175937366	175937367	chr1:175937367:G:C	rs11576862	G	C	G	Sox3.mouse_HMG_3	11	1	+	1.2135637114423787	-3.436611014363759	TATGCCTGTTAGTCAAA
chr1	176142622	176142623	chr1:176142623:T:A	rs10913143	T	A	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	176559698	176559699	chr1:176559699:C:T	rs115530542	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	176559706	176559707	chr1:176559707:C:T	rs191256940	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	176770355	176770356	chr1:176770356:G:A	rs540524985	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	176778999	176779000	chr1:176779000:C:A	rs4652192	C	A	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	176812039	176812040	chr1:176812040:C:T	rs2861812	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	176843858	176843859	chr1:176843859:G:A	rs112458464	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	177021280	177021281	chr1:177021281:G:T	rs7545444	G	T	T	Sox3.mouse_HMG_3	16	1	+	3.9480308387507366	2.7611013225457146	TAGGAAATTCATTCATG
chr1	177069633	177069634	chr1:177069634:A:T	rs55755782	A	T	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	177142025	177142026	chr1:177142026:T:C	rs6667502	T	C	C	Sox3.mouse_HMG_3	15	1	+	0.6931241985719647	-4.021269213143103	ACTGGATGCCCTTCATG
chr1	177163356	177163357	chr1:177163357:G:A	rs77450426	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	177511704	177511705	chr1:177511705:C:A	rs12029490	C	A	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	177586668	177586669	chr1:177586669:A:T	rs80168320	A	T	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	177777876	177777877	chr1:177777877:G:A	rs114799919	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr1	177976534	177976535	chr1:177976535:T:C	rs10913480	T	C	C	Sox3.mouse_HMG_3	12	1	+	1.3543181911300632	-4.838535376270703	TGTGAATCCCAGTCCTA
chr1	178026187	178026188	chr1:178026188:G:A	rs41267170	G	A	G	Sox3.mouse_HMG_3	0	1	-	1.8098699175160327	3.2647405628528983	CGTGAACTACAGTCAGG
chr1	178173060	178173061	chr1:178173061:G:T	rs10047059	G	T	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	178173072	178173073	chr1:178173073:G:A	rs316274	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	178267870	178267871	chr1:178267871:A:G	rs78526082	A	G	A	Sox3.mouse_HMG_3	5	1	-	1.530405641841721	1.530405641841721	AATGATAGCTATTCAGG
chr1	178563348	178563349	chr1:178563349:T:C	rs4433354	T	C	T	Sox3.mouse_HMG_3	6	1	+	11.427122240005932	4.819171598465134	GGTGAATGCTATTCAGT
chr1	178593852	178593853	chr1:178593853:G:A	rs2476554	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr1	178710819	178710820	chr1:178710820:C:T	rs2773093	C	T	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	179126952	179126953	chr1:179126953:A:G	rs2636290	A	G	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	179351442	179351443	chr1:179351443:A:G	rs13306731	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr1	179876240	179876241	chr1:179876241:G:A	rs78166262	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	180547169	180547170	chr1:180547170:C:T	rs902363936	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	180571183	180571184	chr1:180571184:G:A	rs12032249	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	180572485	180572486	chr1:180572486:C:T	rs75459974	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	180644026	180644027	chr1:180644027:A:G	rs16856361	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	180977291	180977292	chr1:180977292:C:A	rs79705422	C	A	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	181091654	181091655	chr1:181091655:G:A	rs6658698	G	A	A	Sox3.mouse_HMG_3	15	1	+	4.979985697950838	5.838767044807258	TTTGAAAGGTATTCAGT
chr1	181140107	181140108	chr1:181140108:G:C	rs4652566	G	C	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr1	181140508	181140509	chr1:181140509:A:G	rs76238232	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	181149555	181149556	chr1:181149556:T:C	rs12066554	T	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	181179937	181179938	chr1:181179938:G:T	rs10797679	G	T	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	181423562	181423563	chr1:181423563:T:C	rs631583	T	C	C	Sox3.mouse_HMG_3	10	1	-	4.2598570582091035	-2.3480935833316945	TGTGAATGCCAGTGAGA
chr1	181604122	181604123	chr1:181604123:T:G	rs199959	T	G	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	181643800	181643801	chr1:181643801:C:T	rs10910978	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	182084728	182084729	chr1:182084729:G:T	rs3856104	G	T	T	Sox3.mouse_HMG_3	3	1	+	1.8701399009718698	-5.0363545835428445	AGTGACTCATATTCATG
chr1	182089819	182089820	chr1:182089820:G:A	rs2236537	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr1	182374214	182374215	chr1:182374215:G:A	rs79038403	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr1	182676400	182676401	chr1:182676401:G:A	rs77152747	G	A	g	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	182732524	182732525	chr1:182732525:A:G	rs6678355	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	182765592	182765593	chr1:182765593:C:T	rs71632163	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr1	183043287	183043288	chr1:183043288:A:G	rs10911206	A	G	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr1	183094602	183094603	chr1:183094603:G:A	rs7542640	G	A	A	Sox3.mouse_HMG_3	7	1	+	3.5892961953151366	-2.964252519342593	TATCAAGGCCAGTCATA
chr1	183125912	183125913	chr1:183125913:G:A	rs1886500	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	183219893	183219894	chr1:183219894:T:C	rs6424892	T	C	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr1	183219898	183219899	chr1:183219899:C:G	rs10911286	C	G	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr1	183273314	183273315	chr1:183273315:A:G	rs75870725	A	G	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	183543704	183543705	chr1:183543705:T:C	rs789176	T	C	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr1	183543727	183543728	chr1:183543728:A:G	rs188450563	A	G	A	Sox3.mouse_HMG_3	14	1	+	6.701675936310558	0.31972976988364743	TATAAATGCTACTCATG
chr1	183620489	183620490	chr1:183620490:C:T	rs10797895	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	183637611	183637612	chr1:183637612:C:A	rs1174686	C	A	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	183689831	183689832	chr1:183689832:C:T	rs191255444	C	T	C	Sox3.mouse_HMG_3	7	1	-	3.2041272458305263	-3.3494214688272024	AATGAATGTTTTTTATT
chr1	183998052	183998053	chr1:183998053:T:C	rs4651161	T	C	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	184021611	184021612	chr1:184021612:G:A	rs10911494	G	A	A	Sox3.mouse_HMG_3	1	1	+	6.266445566181961	9.366575502619254	AGTGAATTCTGTTCATT
chr1	184222695	184222696	chr1:184222696:G:A	chr1:184222696:G:A	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	184256635	184256636	chr1:184256636:G:A	rs114593890	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr1	184256675	184256676	chr1:184256676:A:G	rs11802851	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	184405775	184405776	chr1:184405776:T:C	rs732959	T	C	C	Sox3.mouse_HMG_3	5	1	-	0.602839326418303	-5.885995595652563	TAGGAACTTCAGTCATC
chr1	184480817	184480818	chr1:184480818:T:G	rs12082456	T	G	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	184482128	184482129	chr1:184482129:C:T	rs114851440	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	184482169	184482170	chr1:184482170:C:T	rs73063548	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	184903067	184903068	chr1:184903068:A:T	rs4651236	A	T	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr1	184903093	184903094	chr1:184903094:T:C	rs234674	T	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr1	184941782	184941783	chr1:184941783:G:A	rs234089	G	A	A	Sox3.mouse_HMG_3	11	1	+	3.4524601563766977	-1.1977145694294398	ACTAAATGCCAGTCAGA
chr1	184970946	184970947	chr1:184970947:G:T	rs373923375	G	T	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	184972493	184972494	chr1:184972494:T:C	rs234105	T	C	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	185542141	185542142	chr1:185542142:G:A	rs149269266	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	185608511	185608512	chr1:185608512:C:T	rs114055497	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr1	185610048	185610049	chr1:185610049:T:G	rs10798023	T	G	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	185646477	185646478	chr1:185646478:T:G	chr1:185646478:T:G	T	G	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	185721053	185721054	chr1:185721054:A:G	rs61831485	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	185721083	185721084	chr1:185721084:T:C	rs61831486	T	C	T	Sox3.mouse_HMG_3	5	1	-	2.368488176283154	-4.12034674578771	GCTGAATTATAATCAGC
chr1	186042080	186042081	chr1:186042081:A:G	rs10911805	A	G	G	Sox3.mouse_HMG_3	6	1	-	5.587223439562374	-1.020727201978423	TATGTATGATATCCATG
chr1	186042102	186042103	chr1:186042103:A:C	rs6659819	A	C	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	186213002	186213003	chr1:186213003:T:C	chr1:186213003:T:C	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	186213023	186213024	chr1:186213024:T:C	rs6666859	T	C	T	Sox3.mouse_HMG_3	15	1	-	1.8175586321088504	0.9587772852524299	GATGAATGACTGTCCAG
chr1	186466091	186466092	chr1:186466092:T:G	rs16825403	T	G	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr1	186577413	186577414	chr1:186577414:G:A	rs80090346	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	186681950	186681951	chr1:186681951:T:G	rs689462	T	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	186977498	186977499	chr1:186977499:C:T	rs12720686	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	186977505	186977506	chr1:186977506:C:T	rs2891262	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	186977508	186977509	chr1:186977509:C:G	rs2891263	C	G	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr1	187236750	187236751	chr1:187236751:T:G	rs683780	T	G	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr1	187265262	187265263	chr1:187265263:G:A	rs150485734	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.7916622263300752	-3.9899026611991575	ACTGCATTGTAGTCAAT
chr1	187471783	187471784	chr1:187471784:A:G	rs10732980	A	G	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	187646937	187646938	chr1:187646938:T:C	rs2066084	T	C	T	Sox3.mouse_HMG_3	8	1	+	0.873001230267433	1.135120975183539	ACTGAATGTCAATGATG
chr1	187655853	187655854	chr1:187655854:C:A	rs74993284	C	A	C	Sox3.mouse_HMG_3	13	1	+	1.991549918864101	-4.3910867551132755	TTTGTATTCTATACATA
chr1	187764571	187764572	chr1:187764572:T:C	rs2495444	T	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr1	187840089	187840090	chr1:187840090:T:C	rs2192120	T	C	t	Sox3.mouse_HMG_3	10	1	-	0.5949987186980992	-6.012951922842698	GCTGTCTTCTATTCATG
chr1	187840094	187840095	chr1:187840095:G:T	rs75536252	G	T	G	Sox3.mouse_HMG_3	5	1	-	0.5949987186980992	7.20243938317681	GCTGTCTTCTATTCATG
chr1	188648078	188648079	chr1:188648079:A:C	rs7418999	A	C	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	189356472	189356473	chr1:189356473:G:C	rs12124399	G	C	C	Sox3.mouse_HMG_3	16	1	+	1.2650100462610332	-0.7888462094162676	TCTGAATGTTTTACATG
chr1	191171870	191171871	chr1:191171871:T:C	rs12728886	T	C	T	Sox3.mouse_HMG_3	1	1	-	1.7284039678342498	-1.371725968603041	TATGAAATGTAGCCATC
chr1	191255839	191255840	chr1:191255840:G:T	rs1246824	G	T	G	Sox3.mouse_HMG_3	3	1	+	3.7730310060176357	-3.1334634784970774	GCAGAATTCTATTCAGT
chr1	191582222	191582223	chr1:191582223:G:A	rs72727109	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr1	191697965	191697966	chr1:191697966:A:G	rs1336861	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	191963691	191963692	chr1:191963692:G:A	rs12144141	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	192081765	192081766	chr1:192081766:A:T	rs3012199	A	T	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	192133500	192133501	chr1:192133501:G:A	rs115916088	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr1	192445151	192445152	chr1:192445152:T:C	rs12725829	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	192579479	192579480	chr1:192579480:G:A	rs531897350	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	192737666	192737667	chr1:192737667:G:A	rs76420531	G	A	g	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr1	192747626	192747627	chr1:192747627:G:C	rs141575378	G	C	G	Sox3.mouse_HMG_3	0	1	+	5.0193833941640085	3.29559189502739	GATGTATTTAATTCATA
chr1	193497929	193497930	chr1:193497930:G:A	rs10921365	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr1	193536776	193536777	chr1:193536777:G:T	rs140557168	G	T	g	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr1	193614991	193614992	chr1:193614992:A:G	rs72744026	A	G	A	Sox3.mouse_HMG_3	12	1	-	2.935018488817779	-3.2578350785829873	CTTGATTTTTAGTCATC
chr1	193651685	193651686	chr1:193651686:C:G	rs6428189	C	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	193732261	193732262	chr1:193732262:C:T	rs7550266	C	T	c	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	193762445	193762446	chr1:193762446:T:C	rs35685328	T	C	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	193762460	193762461	chr1:193762461:G:A	rs33931767	G	A	A	Sox3.mouse_HMG_3	5	1	-	3.2376207750166506	3.2376207750166506	CATGACTTCTATTCTTA
chr1	193819363	193819364	chr1:193819364:G:A	rs12142903	G	A	g	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	194087026	194087027	chr1:194087027:C:T	rs2031146	C	T	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	194327198	194327199	chr1:194327199:A:C	rs6428216	A	C	A	Sox3.mouse_HMG_3	14	1	+	4.529862116186135	-1.8520840502407765	ACTGCATTTCAGTCATG
chr1	194819185	194819186	chr1:194819186:T:A	rs16837483	T	A	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr1	195009157	195009158	chr1:195009158:A:C	rs4428866	A	C	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr1	195115333	195115334	chr1:195115334:A:T	rs10921789	A	T	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr1	195185788	195185789	chr1:195185789:G:A	rs658239	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	195480818	195480819	chr1:195480819:A:C	rs6675488	A	C	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	195548331	195548332	chr1:195548332:T:C	rs77341067	T	C	t	Sox3.mouse_HMG_3	2	1	+	2.487832982198773	-4.118046136032158	GATGAATCTTATTAAAT
chr1	195847129	195847130	chr1:195847130:A:C	rs10801471	A	C	C	Sox3.mouse_HMG_3	10	1	+	1.6501603000179335	-5.100891185163537	GATGTATTACATTAAGA
chr1	195848838	195848839	chr1:195848839:C:T	rs10754163	C	T	C	Sox3.mouse_HMG_3	3	1	-	5.204395350933044	-0.5771695365961869	GTTGAATTTAAGTCATC
chr1	195899627	195899628	chr1:195899628:A:C	rs17633002	A	C	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	195958480	195958481	chr1:195958481:A:G	rs10921993	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	196208181	196208182	chr1:196208182:G:A	rs76204409	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	196510542	196510543	chr1:196510543:T:C	rs1416971	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	197137473	197137474	chr1:197137474:C:T	rs2151135	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	197696176	197696177	chr1:197696177:T:C	rs114979698	T	C	T	Sox3.mouse_HMG_3	4	1	-	5.45467658089307	-0.9281401471009973	AATGAATGGCAGGCAGC
chr1	197763924	197763925	chr1:197763925:G:A	rs1775456	G	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	197949223	197949224	chr1:197949224:C:A	rs189169724	C	A	C	Sox3.mouse_HMG_3	3	1	-	7.328770513496318	0.42227602898160377	AATGAATTCTATTCTAT
chr1	198054553	198054554	chr1:198054554:A:C	rs1120914	A	C	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	198307668	198307669	chr1:198307669:C:T	rs12093069	C	T	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	198391366	198391367	chr1:198391367:G:T	rs6695684	G	T	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	198495641	198495642	chr1:198495642:A:C	rs74134725	A	C	A	Sox3.mouse_HMG_3	4	1	+	3.6966498941936417	-3.0538916139257433	TATAAATTGTATTAAAA
chr1	198726416	198726417	chr1:198726417:G:C	rs4483440	G	C	C	Sox3.mouse_HMG_3	13	1	-	0.611077999185468	-5.996182611276553	AATGGATGGGATACATG
chr1	198772041	198772042	chr1:198772042:C:G	rs59627919	C	G	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr1	198894037	198894038	chr1:198894038:C:T	rs12134155	C	T	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	198932567	198932568	chr1:198932568:T:G	rs1275169	T	G	G	Sox3.mouse_HMG_3	12	1	+	-0.1793068689218067	-6.560381715243718	GCTGAACTGCAGTCTTG
chr1	198932574	198932575	chr1:198932575:G:C	rs376636246	G	C	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr1	198950524	198950525	chr1:198950525:A:G	rs10800603	A	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr1	199152201	199152202	chr1:199152202:G:A	rs3861924	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	199394982	199394983	chr1:199394983:G:T	rs4562659	G	T	G	Sox3.mouse_HMG_3	9	1	-	4.270373627775665	-1.7838449967326522	CTTGAAATCCATTCAAG
chr1	199537873	199537874	chr1:199537874:G:A	rs72735445	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	199590457	199590458	chr1:199590458:T:C	rs17696499	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr1	199869038	199869039	chr1:199869039:A:C	rs139684235	A	C	A	Sox3.mouse_HMG_3	13	1	-	3.698942252761255	3.698942252761255	TATAAATGATATTTAAA
chr1	199909484	199909485	chr1:199909485:C:A	rs113156026	C	A	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	200224736	200224737	chr1:200224737:A:G	rs1111643	A	G	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	200269687	200269688	chr1:200269688:C:A	rs11581501	C	A	A	Sox3.mouse_HMG_3	8	1	-	1.824395741548573	1.1194933279545354	TTTGATATGCATTCATG
chr1	200356061	200356062	chr1:200356062:T:C	rs2790130	T	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr1	200653139	200653140	chr1:200653140:C:T	rs115105198	C	T	c	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	200653169	200653170	chr1:200653170:C:T	rs114522239	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr1	200674709	200674710	chr1:200674710:T:C	rs6667172	T	C	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr1	201336207	201336208	chr1:201336208:A:G	rs1539692	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	201349954	201349955	chr1:201349955:C:G	rs12084456	C	G	G	Sox3.mouse_HMG_3	13	1	+	-0.32327827412963894	-6.930538884591659	GCTGGAGTGCAGTCATG
chr1	201368041	201368042	chr1:201368042:A:G	rs3729842	A	G	G	Sox3.mouse_HMG_3	14	1	+	4.465956747691248	-1.9159894187356628	GTTGAATCTTAGTCAAT
chr1	201461621	201461622	chr1:201461622:G:A	rs1014503702	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	201558792	201558793	chr1:201558793:A:G	rs2767293	A	G	G	Sox3.mouse_HMG_3	5	1	+	2.935285714589399	-3.5535492074814647	TATGAATTTTAATCTTC
chr1	201558823	201558824	chr1:201558824:G:A	rs6680020	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	201603875	201603876	chr1:201603876:T:C	rs617301	T	C	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr1	201686179	201686180	chr1:201686180:C:A	rs609480	C	A	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr1	201730956	201730957	chr1:201730957:C:T	rs11584710	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	201751065	201751066	chr1:201751066:C:T	rs12093968	C	T	C	Sox3.mouse_HMG_3	13	1	+	3.1236603960408713	-3.4836002144211493	CAGGAATTTCACTCATA
chr1	202058799	202058800	chr1:202058800:A:G	rs114757723	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	202058801	202058802	chr1:202058802:G:C	rs11811224	G	C	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	202109763	202109764	chr1:202109764:C:T	rs73076595	C	T	T	Sox3.mouse_HMG_3	11	1	+	-0.35022578042765207	5.734385045674292	GATGCAGGGCACTCATA
chr1	202109779	202109780	chr1:202109780:T:C	rs61347119	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	202289988	202289989	chr1:202289989:A:G	rs187970821	A	G	A	Sox3.mouse_HMG_3	4	1	+	8.87080388390325	2.4879871559091797	AATTAATGATATTCATC
chr1	202321857	202321858	chr1:202321858:G:A	rs788809	G	A	A	Sox3.mouse_HMG_3	3	1	+	1.4587218776865167	-4.322843009842715	CCAGAATGGTATCCATG
chr1	202352984	202352985	chr1:202352985:T:G	rs6658708	T	G	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	202606491	202606492	chr1:202606492:C:G	rs6700295	C	G	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	202681496	202681497	chr1:202681497:A:C	rs12038816	A	C	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	202766085	202766086	chr1:202766086:C:T	rs12121706	C	T	C	Sox3.mouse_HMG_3	3	1	-	5.697519472308446	-0.08404541522078413	GATGCATGCCATGCATG
chr1	202803232	202803233	chr1:202803233:T:C	rs116629696	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	203058111	203058112	chr1:203058112:A:G	rs10920556	A	G	a	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr1	203204227	203204228	chr1:203204228:T:C	rs2486949	T	C	t	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr1	203275730	203275731	chr1:203275731:A:T	rs2486931	A	T	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	203425451	203425452	chr1:203425452:A:G	rs2275672	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	203525250	203525251	chr1:203525251:C:T	rs13303363	C	T	C	Sox3.mouse_HMG_3	7	1	-	1.2312395141305674	-5.32230920052716	CTTGAATGACAGACAGC
chr1	203803967	203803968	chr1:203803968:A:C	rs7518201	A	C	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	203869080	203869081	chr1:203869081:C:T	rs7542275	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	203955730	203955731	chr1:203955731:G:A	rs61997224	G	A	.	Sox3.mouse_HMG_3	7	1	+	-0.645999574504837	-7.199548289162568	GAGGAAAGGCATTCCTA
chr1	204100829	204100830	chr1:204100830:T:C	rs1534097	T	C	C	Sox3.mouse_HMG_3	4	1	-	2.8451342520872167	-3.537682475906853	GTGGAATGACACTCATG
chr1	204282625	204282626	chr1:204282626:A:G	rs12124529	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr1	204396868	204396869	chr1:204396869:T:C	rs2942145	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	204468442	204468443	chr1:204468443:G:C	rs17406570	G	C	G	Sox3.mouse_HMG_3	3	1	+	6.482479994145789	-0.2670107415592613	TGTGAATGATCTTCATC
chr1	204468465	204468466	chr1:204468466:C:T	rs12093802	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr1	204506680	204506681	chr1:204506681:T:C	rs115794764	T	C	t	Sox3.mouse_HMG_3	1	1	+	1.683267109515291	0.4764844038484911	GTTGAATTCAAATCATT
chr1	204506700	204506701	chr1:204506701:A:G	chr1:204506701:A:G	A	G	a	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	204506705	204506706	chr1:204506706:G:T	rs4951389	G	T	t	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr1	204922029	204922030	chr1:204922030:G:A	rs373116642	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	204933472	204933473	chr1:204933473:A:G	rs60903481	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	204967478	204967479	chr1:204967479:A:G	rs12725682	A	G	A	Sox3.mouse_HMG_3	11	1	-	5.734098204023903	-0.35051262207804323	AATCAATGAGATTCATG
chr1	204999816	204999817	chr1:204999817:A:G	rs6700069	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr1	205255629	205255630	chr1:205255630:A:G	rs1172149	A	G	a	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	205354695	205354696	chr1:205354696:T:C	rs184228320	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	205389493	205389494	chr1:205389494:G:A	rs11240466	G	A	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr1	205535250	205535251	chr1:205535251:C:T	rs74680854	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	205653124	205653125	chr1:205653125:G:A	rs7514718	G	A	a	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	205850525	205850526	chr1:205850526:G:C	rs12730610	G	C	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	205984697	205984698	chr1:205984698:T:C	rs878898522	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	206003538	206003539	chr1:206003539:T:A	rs918596283	T	A	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	206129503	206129504	chr1:206129504:G:A	rs73086104	G	A	.	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	206470603	206470604	chr1:206470604:G:A	rs41303988	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr1	206470629	206470630	chr1:206470630:A:C	rs17020312	A	C	A	Sox3.mouse_HMG_3	10	1	+	3.706866571584872	-3.0441849135965984	CATGAATGACAGTGAGC
chr1	206558115	206558116	chr1:206558116:A:G	rs115098986	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	206558118	206558119	chr1:206558119:G:T	rs550568903	G	T	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	206586642	206586643	chr1:206586643:G:A	rs10779488	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	206662639	206662640	chr1:206662640:T:C	rs12140926	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	206710774	206710775	chr1:206710775:A:C	rs12127807	A	C	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	206724464	206724465	chr1:206724465:G:T	rs6540576	G	T	G	Sox3.mouse_HMG_3	10	1	-	1.3432176876946895	8.09426917287616	AATGAAAGCCCTTCAGA
chr1	207006436	207006437	chr1:207006437:A:G	rs11586424	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	207006476	207006477	chr1:207006477:G:A	rs4844564	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	207014060	207014061	chr1:207014061:C:T	rs764317	C	T	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr1	207240700	207240701	chr1:207240701:T:A	rs891372	T	A	A	Sox3.mouse_HMG_3	6	1	+	3.3907426473109514	-3.3603088378705195	CATGAATTATAATTATG
chr1	207241386	207241387	chr1:207241387:C:T	rs17258843	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr1	207458432	207458433	chr1:207458433:T:C	rs311307	T	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	207502507	207502508	chr1:207502508:T:G	rs12075933	T	G	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr1	207649210	207649211	chr1:207649211:C:T	rs7544931	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	207649235	207649236	chr1:207649236:G:T	rs7521762	G	T	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr1	207806300	207806301	chr1:207806301:A:C	rs144470755	A	C	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr1	207844323	207844324	chr1:207844324:C:T	rs2745978	C	T	T	Sox3.mouse_HMG_3	8	1	-	2.0263945714206586	1.4032779242428455	GATGAATAGTATTCCAC
chr1	207844327	207844328	chr1:207844328:T:C	rs2724395	T	C	T	Sox3.mouse_HMG_3	4	1	-	2.0263945714206586	-4.356422156573409	GATGAATAGTATTCCAC
chr1	207948627	207948628	chr1:207948628:A:G	rs114577368	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr1	208022170	208022171	chr1:208022171:A:C	rs1193096	A	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	208153868	208153869	chr1:208153869:T:A	rs12024077	T	A	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	208279342	208279343	chr1:208279343:T:C	rs67116579	T	C	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr1	208520954	208520955	chr1:208520955:C:T	rs74362618	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr1	208578036	208578037	chr1:208578037:C:T	rs12144235	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr1	208615382	208615383	chr1:208615383:G:A	rs4844429	G	A	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	208784415	208784416	chr1:208784416:T:G	rs1166933	T	G	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	208787145	208787146	chr1:208787146:G:T	rs12139799	G	T	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr1	208976569	208976570	chr1:208976570:A:G	rs1924253	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr1	208988445	208988446	chr1:208988446:A:T	rs10863738	A	T	A	Sox3.mouse_HMG_3	2	1	-	5.465935814489147	-0.2613928998504773	AATGAATGGTATGGATG
chr1	209025293	209025294	chr1:209025294:C:A	rs2209195	C	A	C	Sox3.mouse_HMG_3	13	1	+	4.8115177190388065	-1.5711189549385693	AATGAATTGTGGTCACA
chr1	209098803	209098804	chr1:209098804:A:T	rs1174561	A	T	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	209110114	209110115	chr1:209110115:A:G	rs11119220	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	209158065	209158066	chr1:209158066:G:A	rs114985175	G	A	G	Sox3.mouse_HMG_3	3	1	+	0.2942934285135179	-5.487271459015714	GATGTGTGTCATTCAGC
chr1	209182188	209182189	chr1:209182189:G:T	rs6701612	G	T	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr1	209203204	209203205	chr1:209203205:G:A	rs2970555	G	A	G	Sox3.mouse_HMG_3	0	1	-	4.637091006207101	6.091961651543966	CCTGAATGGCAGACATT
chr1	209462579	209462580	chr1:209462580:A:G	rs6540533	A	G	g	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr1	209537669	209537670	chr1:209537670:T:C	rs2142967	T	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	209548340	209548341	chr1:209548341:T:C	rs10436969	T	C	T	Sox3.mouse_HMG_3	6	1	+	1.470457271482025	-5.137493370058772	AATTAATGTTTGTCATT
chr1	209613537	209613538	chr1:209613538:C:T	rs2206107	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	209618583	209618584	chr1:209618584:G:T	rs2076222	G	T	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	209748777	209748778	chr1:209748778:G:T	rs12030655	G	T	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	209777502	209777503	chr1:209777503:G:A	rs41305104	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr1	209873440	209873441	chr1:209873441:G:A	rs1883332	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	209883230	209883231	chr1:209883231:G:A	rs11119360	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	209883232	209883233	chr1:209883233:G:A	rs74225466	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	209890971	209890972	chr1:209890972:A:C	rs10863795	A	C	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	210048719	210048720	chr1:210048720:A:G	rs4844942	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr1	210182648	210182649	chr1:210182649:A:G	rs35640054	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr1	210471369	210471370	chr1:210471370:T:G	rs2223630	T	G	T	Sox3.mouse_HMG_3	10	1	-	3.7193181915008466	-3.0317332936806247	AAATAATGACAGTCATA
chr1	210506830	210506831	chr1:210506831:A:G	rs187383837	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr1	210525960	210525961	chr1:210525961:C:T	rs11583907	C	T	c	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	210557177	210557178	chr1:210557178:A:G	rs6659137	A	G	A	Sox3.mouse_HMG_3	6	1	-	8.954228214132815	2.346277572592016	AATGCATTTCATTCATT
chr1	210621463	210621464	chr1:210621464:T:C	rs12758027	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	210829083	210829084	chr1:210829084:C:T	rs76389800	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	210918506	210918507	chr1:210918507:C:T	rs61848992	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	210952801	210952802	chr1:210952802:A:G	rs1393030	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	211146182	211146183	chr1:211146183:G:A	rs7545673	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	211222077	211222078	chr1:211222078:C:T	rs3111245	C	T	C	Sox3.mouse_HMG_3	16	1	+	0.15265731292612483	1.0195840523984039	GAGGAAAGCCATTCAGC
chr1	211344422	211344423	chr1:211344423:A:G	rs6672742	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	211475728	211475729	chr1:211475729:G:A	rs12078629	G	A	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	211781782	211781783	chr1:211781783:G:A	rs11119810	G	A	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr1	212037941	212037942	chr1:212037942:G:T	rs1578993	G	T	T	Sox3.mouse_HMG_3	3	1	+	9.809868148359273	2.9033736638445573	AATGATTTGTATTCATT
chr1	212218611	212218612	chr1:212218612:C:T	rs4951580	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	212313968	212313969	chr1:212313969:A:C	rs12035647	A	C	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	212470437	212470438	chr1:212470438:A:G	rs78668806	A	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	212486154	212486155	chr1:212486155:T:C	rs528345213	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	212529289	212529290	chr1:212529290:C:G	rs143577983	C	G	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	212529313	212529314	chr1:212529314:A:G	rs1331060	A	G	A	Sox3.mouse_HMG_3	7	1	+	4.489033662416717	11.042582377074448	GATGAATACTATTGATT
chr1	212532781	212532782	chr1:212532782:A:G	rs6692374	A	G	A	Sox3.mouse_HMG_3	4	1	-	10.03678444341153	9.893683599770856	AATGTATGATATTCATT
chr1	212564980	212564981	chr1:212564981:G:A	chr1:212564981:G:A	G	A	G	Sox3.mouse_HMG_3	7	1	-	4.9287316011547615	10.332142781132081	TAAGAATCACAGTCATA
chr1	212693633	212693634	chr1:212693634:G:A	rs11119997	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	212816765	212816766	chr1:212816766:T:A	rs6540767	T	A	A	Sox3.mouse_HMG_3	15	1	-	1.7920717927808407	4.055881257017662	TAGGAATTTCATTTAAA
chr1	213399724	213399725	chr1:213399725:T:C	rs75433441	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	213474255	213474256	chr1:213474256:C:T	rs569211853	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	213504916	213504917	chr1:213504917:T:C	rs178599	T	C	C	Sox3.mouse_HMG_3	10	1	-	4.019024673748209	-2.588925967792588	GATGGATGCTATGCATC
chr1	213513911	213513912	chr1:213513912:C:T	rs11579435	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	213586368	213586369	chr1:213586369:G:T	rs11120162	G	T	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	213797616	213797617	chr1:213797617:T:C	rs6702664	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	213892167	213892168	chr1:213892168:A:G	rs701895	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	214003525	214003526	chr1:214003526:G:A	rs4282786	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	214037238	214037239	chr1:214037239:G:A	rs76793602	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	214220196	214220197	chr1:214220197:G:A	rs12134227	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	214220207	214220208	chr1:214220208:C:T	rs76229336	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr1	214283325	214283326	chr1:214283326:C:T	rs34071166	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr1	214318617	214318618	chr1:214318618:C:T	rs12124666	C	T	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	214427359	214427360	chr1:214427360:T:C	rs4475717	T	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	214447500	214447501	chr1:214447501:G:T	rs74226185	G	T	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	214954041	214954042	chr1:214954042:C:T	rs486494	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr1	215188863	215188864	chr1:215188864:G:A	rs10494994	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	215384574	215384575	chr1:215384575:T:C	rs11120584	T	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr1	215861806	215861807	chr1:215861807:A:G	rs970464	A	G	A	Sox3.mouse_HMG_3	1	1	+	1.7892213708455769	-1.3109085655917152	AATGGATGCCATGCAAT
chr1	215923537	215923538	chr1:215923538:T:C	rs4288568	T	C	T	Sox3.mouse_HMG_3	1	1	-	1.1735899244188994	-1.9265400120183922	CAGGAATGACAGGCATT
chr1	216033425	216033426	chr1:216033426:G:A	rs11120725	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr1	216457034	216457035	chr1:216457035:A:C	rs137985705	A	C	A	Sox3.mouse_HMG_3	10	1	+	2.38149098073446	-4.369560504447009	CATTAAATACATTCATA
chr1	216750130	216750131	chr1:216750131:C:T	rs2789731	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	216832346	216832347	chr1:216832347:A:G	rs12077440	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	217010552	217010553	chr1:217010553:G:A	rs34096624	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	217011300	217011301	chr1:217011301:G:A	rs946438	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	217018678	217018679	chr1:217018679:T:C	rs11117750	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	217018696	217018697	chr1:217018697:C:T	rs11572435	C	T	C	Sox3.mouse_HMG_3	3	1	-	0.5782639080111616	-5.20330097951807	GGGGAAGGACAGTCATA
chr1	217067755	217067756	chr1:217067756:T:C	rs1166345	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	217136635	217136636	chr1:217136636:A:T	rs113063793	A	T	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	217272391	217272392	chr1:217272392:C:A	rs78579108	C	A	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	217389037	217389038	chr1:217389038:G:A	rs74142410	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	217660492	217660493	chr1:217660493:G:A	rs116169110	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	217862224	217862225	chr1:217862225:A:G	rs10779304	A	G	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	217983340	217983341	chr1:217983341:T:C	rs114908539	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	218459424	218459425	chr1:218459425:C:T	rs138992605	C	T	C	Sox3.mouse_HMG_3	13	1	+	3.0358643438980213	-3.5713962665639984	GATATATTTTATTCAAA
chr1	218666545	218666546	chr1:218666546:C:T	rs116510266	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	218668215	218668216	chr1:218668216:T:G	rs76554564	T	G	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr1	218789221	218789222	chr1:218789222:A:G	rs138909911	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	219023350	219023351	chr1:219023351:A:T	rs2174465	A	T	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	219074726	219074727	chr1:219074727:T:G	rs17579646	T	G	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr1	219082583	219082584	chr1:219082584:C:T	rs76837400	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	219272367	219272368	chr1:219272368:A:G	rs61836090	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr1	219302900	219302901	chr1:219302901:C:T	rs11118261	C	T	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr1	219515002	219515003	chr1:219515003:T:C	rs1547724	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	219636004	219636005	chr1:219636005:T:C	rs10863470	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	219991511	219991512	chr1:219991512:C:G	rs1622508	C	G	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr1	219994049	219994050	chr1:219994050:G:C	rs10779393	G	C	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr1	220219069	220219070	chr1:220219070:A:C	rs17565134	A	C	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	220274259	220274260	chr1:220274260:A:C	rs2667961	A	C	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr1	220552945	220552946	chr1:220552946:A:G	rs4846326	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	220917814	220917815	chr1:220917815:T:C	rs1414518	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	221030720	221030721	chr1:221030721:C:G	rs6683305	C	G	C	Sox3.mouse_HMG_3	11	1	+	1.1437207899386288	5.793895515744766	GGTTAATTGCACTCATT
chr1	221264304	221264305	chr1:221264305:G:A	rs78324305	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	221372754	221372755	chr1:221372755:G:A	rs6660885	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	221430335	221430336	chr1:221430336:A:G	rs1599092	A	G	A	Sox3.mouse_HMG_3	2	1	-	5.946189420336989	-0.6596896978939422	TATGTATGTTAGTCAAC
chr1	221439955	221439956	chr1:221439956:C:T	rs10863613	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	221439993	221439994	chr1:221439994:C:T	rs189174204	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr1	221598335	221598336	chr1:221598336:T:C	rs12081273	T	C	C	Sox3.mouse_HMG_3	0	1	-	1.1628837091948083	1.9881676103411523	AATGAAAGACTTTCAGA
chr1	221605621	221605622	chr1:221605622:A:T	rs7512037	A	T	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr1	221726439	221726440	chr1:221726440:T:C	rs140865555	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	221745156	221745157	chr1:221745157:A:G	rs75880035	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	221775526	221775527	chr1:221775527:T:C	rs12029988	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	222033544	222033545	chr1:222033545:G:A	rs2584315	G	A	G	Sox3.mouse_HMG_3	7	1	+	1.9389249653684977	-4.61462374928923	TATGAATGCCTGTCCTC
chr1	222054566	222054567	chr1:222054567:C:T	rs7530201	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	222054595	222054596	chr1:222054596:A:G	rs115416215	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.0818692095079756	-4.526081432032822	GGTGAGATGCATTCATG
chr1	222057372	222057373	chr1:222057373:T:G	rs2066136	T	G	G	Sox3.mouse_HMG_3	4	1	-	4.887696493458644	-1.8628450146607398	AATGAATGACTGTCACA
chr1	222077700	222077701	chr1:222077701:A:G	rs11118936	A	G	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr1	222241642	222241643	chr1:222241643:G:A	rs79175330	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr1	222374045	222374046	chr1:222374046:G:C	rs4568840	G	C	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr1	222787779	222787780	chr1:222787780:A:G	rs34430931	A	G	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	223031839	223031840	chr1:223031840:C:T	rs2066113	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	223118827	223118828	chr1:223118828:G:T	rs112980629	G	T	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr1	223148632	223148633	chr1:223148633:G:C	rs2353475	G	C	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	223338792	223338793	chr1:223338793:A:G	rs61838240	A	G	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	223542986	223542987	chr1:223542987:A:G	rs4072246	A	G	G	Sox3.mouse_HMG_3	1	1	+	6.054888296995823	2.95475836055853	CATGCATGGTATTCACA
chr1	223609491	223609492	chr1:223609492:G:A	rs937020031	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	223742079	223742080	chr1:223742080:G:A	rs73123609	G	A	G	Sox3.mouse_HMG_3	13	1	-	3.4806206523580068	-3.126639958104013	TTTGAATTCTAGTCGAT
chr1	223751236	223751237	chr1:223751237:C:T	rs28370073	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	223751724	223751725	chr1:223751725:A:G	rs1153965	A	G	G	Sox3.mouse_HMG_3	8	1	+	2.5782908825785746	3.2014075297563878	AATGAACTATGTTCATT
chr1	223777073	223777074	chr1:223777074:A:G	rs974345327	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	223777076	223777077	chr1:223777077:A:T	chr1:223777077:A:T	A	T	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr1	223831686	223831687	chr1:223831687:G:C	rs12731254	G	C	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	224013251	224013252	chr1:224013252:A:T	rs12074424	A	T	-	Sox3.mouse_HMG_3	14	1	+	1.6968872270195414	-4.685058939407369	AATGGATTCGAGTCAAA
chr1	224068026	224068027	chr1:224068027:A:G	rs1492689	A	G	A	Sox3.mouse_HMG_3	15	1	-	2.21237276297562	-2.5020206487394487	GGTAAAGGGTAGTCATG
chr1	224068054	224068055	chr1:224068055:G:A	rs7513964	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	224087636	224087637	chr1:224087637:T:A	rs6690358	T	A	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	224113407	224113408	chr1:224113408:T:C	rs4653972	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr1	224124316	224124317	chr1:224124317:C:A	rs6658494	C	A	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	224163550	224163551	chr1:224163551:A:G	rs73126416	A	G	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	224334508	224334509	chr1:224334509:T:C	rs7529143	T	C	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr1	224379301	224379302	chr1:224379302:G:A	rs4654037	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	224619273	224619274	chr1:224619274:A:G	rs9919286	A	G	A	Sox3.mouse_HMG_3	11	1	-	2.9091415414429944	-3.1754692846589503	CCTGATTTTCATTCAAA
chr1	224884851	224884852	chr1:224884852:A:G	rs79806974	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	225830101	225830102	chr1:225830102:G:A	rs34878232	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	225916975	225916976	chr1:225916976:T:G	rs360066	T	G	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr1	226043289	226043290	chr1:226043290:C:T	rs72757041	C	T	c	Sox3.mouse_HMG_3	0	1	+	0.19440698537210932	1.6492776307089738	CAGTAATGGCAGTCAAG
chr1	226061400	226061401	chr1:226061401:A:C	rs150803163	A	C	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	226516840	226516841	chr1:226516841:T:C	rs57766782	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	226619108	226619109	chr1:226619109:G:A	rs79045708	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	226748606	226748607	chr1:226748607:C:T	rs708778	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	226760312	226760313	chr1:226760313:T:C	rs80010608	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	226957538	226957539	chr1:226957539:T:A	rs6704087	T	A	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	227245051	227245052	chr1:227245052:C:T	rs77973381	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	227313342	227313343	chr1:227313343:A:G	rs16847634	A	G	A	Sox3.mouse_HMG_3	2	1	-	2.6578534099969566	-3.948025708233975	GGTTACTGGCATTCATG
chr1	227316632	227316633	chr1:227316633:T:C	rs12405363	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	227887945	227887946	chr1:227887946:G:T	rs4233230	G	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	227887992	227887993	chr1:227887993:C:G	rs76585696	C	G	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	228096174	228096175	chr1:228096175:T:C	rs708126	T	C	C	Sox3.mouse_HMG_3	10	1	-	0.5912085444900028	-6.016742097050796	GCTGAATCACAGCCATG
chr1	228443939	228443940	chr1:228443940:G:A	rs12131962	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	228501083	228501084	chr1:228501084:T:C	chr1:228501084:T:C	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.0517181781428542	-5.5541609400880745	TATGAAAGGCAGTTAGA
chr1	228692256	228692257	chr1:228692257:T:A	rs74141312	T	A	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	228845406	228845407	chr1:228845407:T:C	rs11586259	T	C	T	Sox3.mouse_HMG_3	3	1	-	1.216088620925879	6.997653508455109	TATAAAAGTTAGTCAGG
chr1	228861027	228861028	chr1:228861028:T:C	rs801113	T	C	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	228861038	228861039	chr1:228861039:A:T	rs74726942	A	T	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	229142616	229142617	chr1:229142617:T:C	rs115035279	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	229147184	229147185	chr1:229147185:T:C	rs9660543	T	C	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr1	229381948	229381949	chr1:229381949:C:T	rs577008	C	T	t	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	229386794	229386795	chr1:229386795:T:C	rs6587332	T	C	C	Sox3.mouse_HMG_3	10	1	-	3.952965548954655	-2.6549850925861422	CGTAAATTTCATTCAGA
chr1	229579144	229579145	chr1:229579145:G:A	rs116265206	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	229671261	229671262	chr1:229671262:C:T	rs6667396	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr1	229696828	229696829	chr1:229696829:T:C	rs192634580	T	C	T	Sox3.mouse_HMG_3	6	1	+	2.3832683835228514	-4.224682258017944	TATCAATGGCAGTCTTC
chr1	229845550	229845551	chr1:229845551:G:A	rs975592371	G	A	G	Sox3.mouse_HMG_3	16	1	+	-0.27306186388310993	-0.30900232033563557	GATGATTGCCATACCTG
chr1	230050431	230050432	chr1:230050432:C:T	rs12084370	C	T	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr1	230073610	230073611	chr1:230073611:C:T	rs192632943	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr1	230099284	230099285	chr1:230099285:G:A	rs12726525	G	A	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	230136823	230136824	chr1:230136824:A:G	rs139910054	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	230285730	230285731	chr1:230285731:T:C	rs7511943	T	C	T	Sox3.mouse_HMG_3	10	1	-	2.6161308126943688	-3.9918198288464275	AATGTGTTTTATTCATT
chr1	230360431	230360432	chr1:230360432:C:T	rs75371673	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	230578745	230578746	chr1:230578746:G:T	rs12072041	G	T	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	230656437	230656438	chr1:230656438:G:A	rs11122570	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	230693240	230693241	chr1:230693241:C:A	rs2478534	C	A	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr1	230702511	230702512	chr1:230702512:G:A	rs2067853	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr1	230792604	230792605	chr1:230792605:C:T	rs2282321	C	T	C	Sox3.mouse_HMG_3	13	1	+	2.1400648343450657	-4.467195776116954	GAGGAATTGTATTCGGA
chr1	230826601	230826602	chr1:230826602:G:A	rs16852759	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	230848318	230848319	chr1:230848319:G:A	rs140040505	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr1	230897282	230897283	chr1:230897283:C:T	rs9431884	C	T	T	Sox3.mouse_HMG_3	8	1	-	2.1745090671452614	1.5513924199674485	CATGAGTTGTGGTCATG
chr1	230917401	230917402	chr1:230917402:T:C	rs16853167	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	230968054	230968055	chr1:230968055:A:G	rs12041147	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	231018347	231018348	chr1:231018348:A:G	rs73110142	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	231091873	231091874	chr1:231091874:A:C	rs73112150	A	C	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr1	231220171	231220172	chr1:231220172:C:G	rs6541262	C	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr1	231392865	231392866	chr1:231392866:T:C	rs139297959	T	C	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	231394976	231394977	chr1:231394977:A:G	rs2808596	A	G	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	231423183	231423184	chr1:231423184:A:C	rs568496391	A	C	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	231463672	231463673	chr1:231463673:G:A	rs1339890	G	A	G	Sox3.mouse_HMG_3	10	1	+	2.16318559430508	8.771136235845878	GATGAATGCCGTTGAAT
chr1	231691571	231691572	chr1:231691572:T:C	rs16854779	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.3145200293110944	-5.291359088919836	GATGACTGGTATTTACA
chr1	231729629	231729630	chr1:231729630:C:T	rs2812388	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	231761556	231761557	chr1:231761557:A:G	rs1538977	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	231873009	231873010	chr1:231873010:G:A	rs72760447	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr1	231873015	231873016	chr1:231873016:G:A	rs6541289	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr1	231953993	231953994	chr1:231953994:A:G	rs9431736	A	G	A	Sox3.mouse_HMG_3	7	1	-	3.8425090790103056	-1.5609021009670134	AATGAATTGTATCCCTT
chr1	231959418	231959419	chr1:231959419:G:T	rs746440470	G	T	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	232016750	232016751	chr1:232016751:A:G	rs1475515	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	232282154	232282155	chr1:232282155:T:A	rs4644444	T	A	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr1	232417992	232417993	chr1:232417993:C:T	rs946132	C	T	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr1	232668040	232668041	chr1:232668041:C:T	rs183976435	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	232776701	232776702	chr1:232776702:T:C	rs73093025	T	C	t	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr1	232853762	232853763	chr1:232853763:C:T	rs16858350	C	T	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	232925550	232925551	chr1:232925551:A:G	rs9424622	A	G	A	Sox3.mouse_HMG_3	12	1	-	4.473468108139967	-1.719385459260799	GATGAATTTTGTTTATA
chr1	232939169	232939170	chr1:232939170:T:C	rs9424513	T	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr1	233075761	233075762	chr1:233075762:A:G	rs10797600	A	G	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr1	233241443	233241444	chr1:233241444:C:T	rs72750080	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	233241460	233241461	chr1:233241461:T:C	rs6665863	T	C	T	Sox3.mouse_HMG_3	0	1	+	2.31110564866331	0.8562350033264456	TAAGAATGACAGTGAAA
chr1	233332219	233332220	chr1:233332220:C:T	rs1294307	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr1	233372817	233372818	chr1:233372818:G:A	rs10737197	G	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	233503676	233503677	chr1:233503677:C:T	rs75621396	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	233809422	233809423	chr1:233809423:T:A	rs950469	T	A	T	Sox3.mouse_HMG_3	0	1	+	3.2727968074046014	2.7164337600580115	TCTGAATTACAGTCTAG
chr1	233959587	233959588	chr1:233959588:T:C	rs4920187	T	C	T	Sox3.mouse_HMG_3	6	1	+	12.286197671307967	5.678247029767172	CATGAATGTCAGTCAGG
chr1	234202556	234202557	chr1:234202557:G:A	rs7531501	G	A	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	234202591	234202592	chr1:234202592:T:G	rs7547589	T	G	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	234228584	234228585	chr1:234228585:C:T	rs61823365	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	234228588	234228589	chr1:234228589:G:A	rs480166	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr1	234271641	234271642	chr1:234271642:C:G	rs11587866	C	G	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr1	234435553	234435554	chr1:234435554:T:C	rs4920241	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr1	234461924	234461925	chr1:234461925:A:C	rs6686327	A	C	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	234559441	234559442	chr1:234559442:C:T	rs6672987	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr1	234585081	234585082	chr1:234585082:C:T	rs12132528	C	T	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr1	234641346	234641347	chr1:234641347:G:A	rs487770	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr1	234676570	234676571	chr1:234676571:G:T	rs73114245	G	T	G	Sox3.mouse_HMG_3	15	1	+	2.2227337918003096	5.345324602893551	TAAGAAAGGTATTCAGT
chr1	234869913	234869914	chr1:234869914:A:T	rs75128984	A	T	A	Sox3.mouse_HMG_3	10	1	+	0.20133311954204802	-6.549718365639421	GTGGGATGTCATTCAAG
chr1	234946077	234946078	chr1:234946078:A:G	rs545307680	A	G	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr1	235011814	235011815	chr1:235011815:T:C	rs1362648460	T	C	T	Sox3.mouse_HMG_3	15	1	+	1.6240916879002898	-3.0903017238147785	AGTGAATGTTATTTTTA
chr1	235298048	235298049	chr1:235298049:C:T	rs11581782	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	235304811	235304812	chr1:235304812:C:A	rs11582288	C	A	C	Sox3.mouse_HMG_3	13	1	+	1.0728102131271586	-5.309826460850219	AGTGTATTCTATGCATG
chr1	235865540	235865541	chr1:235865541:T:C	rs4660116	T	C	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr1	236010080	236010081	chr1:236010081:A:C	rs7522023	A	C	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr1	236012026	236012027	chr1:236012027:C:A	rs3738531	C	A	C	Sox3.mouse_HMG_3	11	1	-	8.938036694816347	10.372472795112156	GATGAATGCCAGCCAAG
chr1	236235591	236235592	chr1:236235592:T:C	rs73112979	T	C	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr1	236454814	236454815	chr1:236454815:A:T	rs1253620	A	T	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	236472040	236472041	chr1:236472041:A:G	rs11587227	A	G	A	Sox3.mouse_HMG_3	5	1	+	3.245602624754405	-3.2432322973164576	TTTAAATGACATTAATG
chr1	236502767	236502768	chr1:236502768:G:A	rs76376941	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr1	236705376	236705377	chr1:236705377:A:G	rs10925201	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	236740490	236740491	chr1:236740491:C:T	rs2385494	C	T	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr1	236747836	236747837	chr1:236747837:A:G	rs10925211	A	G	A	Sox3.mouse_HMG_3	4	1	+	3.9104103548842932	-2.472406373109773	AATCACTGGTATTCATT
chr1	237219970	237219971	chr1:237219971:A:G	rs17626494	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr1	237437562	237437563	chr1:237437563:T:C	rs7552202	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	237453031	237453032	chr1:237453032:G:A	rs2392692	G	A	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr1	237453057	237453058	chr1:237453058:C:G	rs2392691	C	G	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr1	237584377	237584378	chr1:237584378:A:G	rs2618707	A	G	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	237854685	237854686	chr1:237854686:C:T	rs148367455	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr1	237939062	237939063	chr1:237939063:G:T	rs10925543	G	T	G	Sox3.mouse_HMG_3	12	1	+	0.42718276636792063	6.808257612689831	GTTGAATGCCCTGCAAA
chr1	237941327	237941328	chr1:237941328:A:G	rs114783979	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr1	237993904	237993905	chr1:237993905:C:T	rs2487102	C	T	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	238255280	238255281	chr1:238255281:C:A	rs6673487	C	A	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	238255292	238255293	chr1:238255293:G:T	rs6697108	G	T	G	Sox3.mouse_HMG_3	8	1	-	4.592306955398709	4.411972976898828	GATGATTTCTTTTCATA
chr1	238255677	238255678	chr1:238255678:G:A	rs2893632	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr1	238255696	238255697	chr1:238255697:T:C	rs75705169	T	C	T	Sox3.mouse_HMG_3	2	1	+	2.105743028875657	-4.500136089355274	GATGAATGCCAGTGGAA
chr1	238265182	238265183	chr1:238265183:T:A	rs10925602	T	A	T	Sox3.mouse_HMG_3	3	1	-	5.2899140005286025	4.164984403543118	TTTAAATTACAGTCATC
chr1	238329884	238329885	chr1:238329885:G:T	chr1:238329885:G:T	G	T	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	238401396	238401397	chr1:238401397:G:A	rs4659871	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	238611531	238611532	chr1:238611532:A:C	rs590734	A	C	A	Sox3.mouse_HMG_3	10	1	+	3.7990091861024284	-2.952042299079041	CATGAGTTGTATTCTTA
chr1	238752563	238752564	chr1:238752564:T:C	rs2841407	T	C	C	Sox3.mouse_HMG_3	0	1	-	2.218050850280121	3.043334751426465	ATTGAATCACATTCTTG
chr1	238778200	238778201	chr1:238778201:T:C	rs138806741	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	238778462	238778463	chr1:238778463:C:T	rs6429101	C	T	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	238916870	238916871	chr1:238916871:A:C	rs10925781	A	C	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr1	239111705	239111706	chr1:239111706:G:A	rs75188483	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr1	239133343	239133344	chr1:239133344:C:T	rs1848752	C	T	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr1	239269562	239269563	chr1:239269563:G:A	rs61837671	G	A	G	Sox3.mouse_HMG_3	8	1	+	7.2356497695718005	6.612533122393987	TTTGAAGGGTATTCATC
chr1	239367301	239367302	chr1:239367302:T:C	rs72754626	T	C	T	Sox3.mouse_HMG_3	15	1	+	3.834301693917343	-0.8800917177977249	AATGGTTGCTATTCATT
chr1	239374672	239374673	chr1:239374673:T:A	rs10802761	T	A	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	239428484	239428485	chr1:239428485:A:G	rs72754668	A	G	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr1	239516760	239516761	chr1:239516761:G:A	rs35852026	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr1	239545683	239545684	chr1:239545684:A:T	rs1416379	A	T	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	239587764	239587765	chr1:239587765:T:C	rs4376722	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr1	239606277	239606278	chr1:239606278:T:G	rs6668085	T	G	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr1	239678896	239678897	chr1:239678897:T:C	rs6693851	T	C	T	Sox3.mouse_HMG_3	6	1	+	1.539334100484761	-5.068616541056036	AATGAATTCTCTTGAAG
chr1	239810869	239810870	chr1:239810870:G:A	rs1110615	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr1	239819337	239819338	chr1:239819338:G:A	rs1578180	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	239862944	239862945	chr1:239862945:C:T	rs10802808	C	T	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr1	239862952	239862953	chr1:239862953:A:T	rs10802809	A	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr1	239870473	239870474	chr1:239870474:G:A	rs72760708	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	239900065	239900066	chr1:239900066:T:C	rs16839051	T	C	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	239910318	239910319	chr1:239910319:G:A	rs10458442	G	A	g	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr1	240014480	240014481	chr1:240014481:C:T	rs922305	C	T	t	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	240018895	240018896	chr1:240018896:C:T	rs1350896	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr1	240123152	240123153	chr1:240123153:T:C	rs3738434	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	240123171	240123172	chr1:240123172:T:C	rs374513550	T	C	T	Sox3.mouse_HMG_3	1	1	-	3.022940624360171	-0.07718931207712065	GATGAAACACAGTCATT
chr1	240258721	240258722	chr1:240258722:T:C	rs1025574324	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	240349859	240349860	chr1:240349860:C:G	rs72767906	C	G	C	Sox3.mouse_HMG_3	11	1	-	3.2432897167673502	-1.4068850090387874	CTTGCATTGCAGTCAAA
chr1	240402103	240402104	chr1:240402104:T:C	rs200522520	T	C	T	Sox3.mouse_HMG_3	6	1	+	2.9606013776866202	-3.647349263854178	AAGGAATTATACTCATT
chr1	240425816	240425817	chr1:240425817:G:A	rs1414657	G	A	A	Sox3.mouse_HMG_3	3	1	+	2.5418909937357332	-3.2396738937934977	TAGGAATGTTTTTCAAG
chr1	240444748	240444749	chr1:240444749:G:A	rs2356388	G	A	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	240474472	240474473	chr1:240474473:A:G	rs74149141	A	G	A	Sox3.mouse_HMG_3	6	1	-	3.0116727014060416	-3.5962779401347547	AGTGAATTGTAGTTAAT
chr1	240610857	240610858	chr1:240610858:C:T	rs143468269	C	T	C	Sox3.mouse_HMG_3	4	1	-	2.112438266090747	8.495254994084814	GCTGGCTGGTATTCATG
chr1	240612577	240612578	chr1:240612578:T:C	rs202045065	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	240706525	240706526	chr1:240706526:G:T	rs10926337	G	T	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr1	240744195	240744196	chr1:240744196:G:C	rs957964	G	C	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	241005860	241005861	chr1:241005861:C:T	rs116677648	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr1	241176953	241176954	chr1:241176954:A:C	rs112075961	A	C	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr1	241276371	241276372	chr1:241276372:A:C	rs4659596	A	C	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr1	241500161	241500162	chr1:241500162:G:A	rs12759839	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr1	241500175	241500176	chr1:241500176:A:G	rs4660098	A	G	A	Sox3.mouse_HMG_3	13	1	+	4.850935922197299	4.626311985712655	TCTGAATTCCATTAAAA
chr1	241531506	241531507	chr1:241531507:C:A	rs12079341	C	A	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	241531519	241531520	chr1:241531520:A:C	rs12064150	A	C	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	241749371	241749372	chr1:241749372:A:C	rs6669629	A	C	C	Sox3.mouse_HMG_3	16	1	-	1.6809011496452886	2.8678306658503105	CATGAAATTTATTCCTT
chr1	241762933	241762934	chr1:241762934:T:C	rs11587279	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr1	241849082	241849083	chr1:241849083:C:T	rs4149852	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr1	241849105	241849106	chr1:241849106:C:T	rs4149853	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr1	241935295	241935296	chr1:241935296:A:G	rs141078982	A	G	-	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr1	241951832	241951833	chr1:241951833:C:A	rs67802349	C	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr1	241985770	241985771	chr1:241985771:A:C	rs2090691	A	C	a	Sox3.mouse_HMG_3	15	1	-	1.5104864983938497	-1.6121043126993921	CAGGAATTACAGGCATG
chr1	242222547	242222548	chr1:242222548:C:A	rs12409130	C	A	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr1	242225029	242225030	chr1:242225030:T:C	rs77296969	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr1	242243573	242243574	chr1:242243574:A:G	rs78037986	A	G	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	242243608	242243609	chr1:242243609:T:C	rs421625	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr1	242522664	242522665	chr1:242522665:T:C	rs1503804	T	C	T	Sox3.mouse_HMG_3	14	1	-	2.0984817770893933	-4.283464389337517	TATGCATTACATGCAAA
chr1	243301470	243301471	chr1:243301471:C:G	rs115516084	C	G	C	Sox3.mouse_HMG_3	3	1	-	3.9022111479109114	-2.847279587794138	CATGAATTTGCTTCATG
chr1	243344403	243344404	chr1:243344404:T:C	rs139427699	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	244089106	244089107	chr1:244089107:C:G	rs2453197	C	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr1	244154643	244154644	chr1:244154644:G:A	rs59034600	G	A	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr1	244211639	244211640	chr1:244211640:C:T	rs11810106	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr1	244321824	244321825	chr1:244321825:C:T	rs10803197	C	T	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	244322367	244322368	chr1:244322368:T:C	rs4421572	T	C	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr1	244322410	244322411	chr1:244322411:T:C	rs5002490	T	C	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr1	244352787	244352788	chr1:244352788:T:C	rs4658628	T	C	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	244360201	244360202	chr1:244360202:A:G	rs10927210	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	244363521	244363522	chr1:244363522:C:A	rs12401743	C	A	A	Sox3.mouse_HMG_3	13	1	+	3.2830223286832814	-3.0996143452940945	AATGAATGGCTTACAAA
chr1	244478761	244478762	chr1:244478762:G:A	rs192016447	G	A	g	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr1	244537019	244537020	chr1:244537020:C:T	rs3005985	C	T	c	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr1	244820983	244820984	chr1:244820984:C:T	rs114430348	C	T	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	245036765	245036766	chr1:245036766:A:G	rs565883	A	G	A	Sox3.mouse_HMG_3	16	1	+	2.029109326619557	2.0650497830720824	TGTGTATGACATTTATA
chr1	245040098	245040099	chr1:245040099:T:C	rs599171	T	C	T	Sox3.mouse_HMG_3	15	1	+	2.441019128184049	-2.273374283531019	TGTGAATGTTATTACTG
chr1	245092559	245092560	chr1:245092560:G:C	rs111761455	G	C	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr1	245334859	245334860	chr1:245334860:A:G	rs11803433	A	G	A	Sox3.mouse_HMG_3	1	1	-	0.6492506259315012	-0.5575320797353001	ATGGAACGGCAGTCATA
chr1	245751968	245751969	chr1:245751969:T:G	rs2153400	T	G	T	Sox3.mouse_HMG_3	6	1	+	3.0125304747297985	-3.738521010451673	GTTTGATGGCATTCATG
chr1	245751970	245751971	chr1:245751971:G:C	rs2153401	G	C	C	Sox3.mouse_HMG_3	8	1	+	3.0125304747297985	2.5697478060518666	GTTTGATGGCATTCATG
chr1	245831317	245831318	chr1:245831318:G:C	rs10924346	G	C	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	245857020	245857021	chr1:245857021:C:T	rs74667387	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr1	245990789	245990790	chr1:245990790:T:C	rs10924426	T	C	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr1	246001730	246001731	chr1:246001731:T:C	rs111447659	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr1	246034299	246034300	chr1:246034300:C:T	rs10924456	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr1	246070739	246070740	chr1:246070740:T:G	rs2787967	T	G	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	246099950	246099951	chr1:246099951:G:A	rs115710002	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr1	246110370	246110371	chr1:246110371:G:A	rs12040935	G	A	g	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr1	246232190	246232191	chr1:246232191:G:A	rs114684782	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr1	246394263	246394264	chr1:246394264:T:C	rs960227	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr1	246504905	246504906	chr1:246504906:A:G	rs55879429	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr1	246569769	246569770	chr1:246569770:T:G	rs146935517	T	G	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr1	246569775	246569776	chr1:246569776:A:C	rs79617622	A	C	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr1	246793851	246793852	chr1:246793852:A:T	rs12122102	A	T	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	246800075	246800076	chr1:246800076:C:T	rs76130077	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr1	247216758	247216759	chr1:247216759:A:G	rs55961646	A	G	a	Sox3.mouse_HMG_3	9	1	-	3.3113237975433023	3.3036871205515554	GATAAATGATATACAAT
chr1	247435929	247435930	chr1:247435930:G:A	rs10754557	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr1	247447108	247447109	chr1:247447109:C:T	rs56383829	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr1	247457283	247457284	chr1:247457284:C:G	rs9988519	C	G	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	247906857	247906858	chr1:247906858:C:G	rs143975316	C	G	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr1	248189309	248189310	chr1:248189310:G:A	chr1:248189310:G:A	G	A	-	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr1	248189336	248189337	chr1:248189337:G:A	rs11204605	G	A	-	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr1	248372597	248372598	chr1:248372598:A:G	rs28848937	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr1	248372619	248372620	chr1:248372620:T:C	rs28750552	T	C	T	Sox3.mouse_HMG_3	1	1	-	6.509901839822889	3.4097719033855967	CATGAGTGGTAGTCAGG
chr1	248464745	248464746	chr1:248464746:G:T	rs9724898	G	T	.	Sox3.mouse_HMG_3	0	1	+	1.8272353472634015	1.5583144934636475	GATGAATGCTACTTAAC
chr1	248730617	248730618	chr1:248730618:C:G	rs73146453	C	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr1	248789036	248789037	chr1:248789037:G:A	rs4281354	G	A	g	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr1	248791208	248791209	chr1:248791209:A:C	rs1352665779	A	C	-	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr1	248791225	248791226	chr1:248791226:A:G	rs73150507	A	G	-	Sox3.mouse_HMG_3	14	1	+	2.763123631016607	-3.6188225354103034	AATAAAGGGTATTCAGA
chr1	248872432	248872433	chr1:248872433:C:A	rs74939837	C	A	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr10	178481	178482	chr10:178482:T:C	rs145521623	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr10	297514	297515	chr10:297515:T:C	rs61522633	T	C	T	Sox3.mouse_HMG_3	15	1	+	0.16342365703727757	-4.550969754677791	AATGAAATCCTGTCATC
chr10	585100	585101	chr10:585101:A:G	rs12572037	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr10	808070	808071	chr10:808071:T:C	rs7071801	T	C	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr10	821594	821595	chr10:821595:C:G	rs56222464	C	G	c	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr10	1181744	1181745	chr10:1181745:G:A	rs10903398	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr10	1310375	1310376	chr10:1310376:T:C	rs2892331	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr10	1396401	1396402	chr10:1396402:A:C	rs12779875	A	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr10	1514906	1514907	chr10:1514907:G:A	rs150725779	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr10	1514958	1514959	chr10:1514959:C:T	rs73582376	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr10	1618734	1618735	chr10:1618735:A:T	rs1875003	A	T	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr10	1648742	1648743	chr10:1648743:C:T	rs11599764	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr10	1692379	1692380	chr10:1692380:C:T	rs60346236	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr10	2037995	2037996	chr10:2037996:C:T	rs147136655	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr10	2122193	2122194	chr10:2122194:C:T	rs2065533	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr10	2122823	2122824	chr10:2122824:T:C	rs10903679	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	2495489	2495490	chr10:2495490:G:A	rs61835717	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr10	2929394	2929395	chr10:2929395:T:C	rs1574188	T	C	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr10	3095290	3095291	chr10:3095291:G:A	rs142181681	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr10	3162445	3162446	chr10:3162446:T:C	rs191488239	T	C	t	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	3195749	3195750	chr10:3195750:T:C	rs73581104	T	C	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	3404879	3404880	chr10:3404880:C:T	rs10795033	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr10	3404892	3404893	chr10:3404893:G:C	rs10795034	G	C	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr10	3412060	3412061	chr10:3412061:G:C	rs60745586	G	C	G	Sox3.mouse_HMG_3	1	1	+	7.942452440637155	6.865722863218552	GGTGAATGCTATTTATT
chr10	3435796	3435797	chr10:3435797:G:T	rs754891626	G	T	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr10	3446291	3446292	chr10:3446292:A:G	rs883634	A	G	A	Sox3.mouse_HMG_3	15	1	-	0.7095159909111763	-4.004877420803892	GATAAATCCCACTCATG
chr10	3446320	3446321	chr10:3446321:C:T	rs883633	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	3487200	3487201	chr10:3487201:C:A	rs189795231	C	A	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr10	3500568	3500569	chr10:3500569:G:A	rs835332	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr10	3500580	3500581	chr10:3500581:G:A	rs835333	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr10	3624154	3624155	chr10:3624155:A:T	rs148802282	A	T	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr10	3648666	3648667	chr10:3648667:G:C	rs11251993	G	C	G	Sox3.mouse_HMG_3	1	1	-	1.6945217733307307	2.771251350749333	TCTGCATGGCATGCATG
chr10	3690264	3690265	chr10:3690265:T:A	rs78633935	T	A	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr10	3691538	3691539	chr10:3691539:T:C	rs10508261	T	C	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr10	3773987	3773988	chr10:3773988:C:T	rs10795075	C	T	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr10	3779822	3779823	chr10:3779823:G:A	chr10:3779823:G:A	G	A	G	Sox3.mouse_HMG_3	8	1	-	0.6362855891052914	0.3741658441891855	AATGAAGTCCGTTCAGA
chr10	3820127	3820128	chr10:3820128:C:T	rs17842279	C	T	C	Sox3.mouse_HMG_3	6	1	+	0.45993838263233133	7.06788902417313	GGTGAACGCCATTTATC
chr10	3828869	3828870	chr10:3828870:A:G	rs80316981	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr10	3838914	3838915	chr10:3838915:C:T	chr10:3838915:C:T	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr10	3877050	3877051	chr10:3877051:G:C	rs10795084	G	C	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr10	3926250	3926251	chr10:3926251:G:C	rs6601782	G	C	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr10	3980997	3980998	chr10:3980998:T:C	rs1447059206	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr10	3981014	3981015	chr10:3981015:A:T	rs118035988	A	T	A	Sox3.mouse_HMG_3	8	1	+	3.218428881503379	3.1366431150871543	TATGAATTATCTGCATT
chr10	3981036	3981037	chr10:3981037:A:G	rs2031579	A	G	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr10	3986641	3986642	chr10:3986642:C:T	rs56401617	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	3987022	3987023	chr10:3987023:T:A	rs12570958	T	A	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr10	4033041	4033042	chr10:4033042:C:G	rs143291137	C	G	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr10	4061714	4061715	chr10:4061715:C:T	rs17256445	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr10	4159246	4159247	chr10:4159247:C:T	rs11252377	C	T	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr10	4178115	4178116	chr10:4178116:C:T	rs17350653	C	T	T	Sox3.mouse_HMG_3	2	1	+	2.4962841752961014	9.102163293527031	TACGAATTGCTTTCAAA
chr10	4260800	4260801	chr10:4260801:T:C	rs10904213	T	C	T	Sox3.mouse_HMG_3	15	1	+	4.93200179961225	0.21760838789718173	GATTAATGAGAGTCATA
chr10	4266129	4266130	chr10:4266130:G:C	rs144212835	G	C	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr10	4345450	4345451	chr10:4345451:C:G	rs12782979	C	G	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr10	4372253	4372254	chr10:4372254:G:A	rs74832135	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr10	4470294	4470295	chr10:4470295:C:A	rs1904661	C	A	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr10	4470382	4470383	chr10:4470383:C:G	rs11816583	C	G	C	Sox3.mouse_HMG_3	0	1	+	4.891109233756019	6.614900732892638	CTTGAATTATTGTCATA
chr10	4511681	4511682	chr10:4511682:G:A	rs74111809	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr10	4556710	4556711	chr10:4556711:T:C	rs715987	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	4630702	4630703	chr10:4630703:C:T	rs12412551	C	T	C	Sox3.mouse_HMG_3	15	1	+	3.808253731129128	8.522647142844196	AGTGAATGCCATGCACG
chr10	4650020	4650021	chr10:4650021:T:C	rs7898983	T	C	T	Sox3.mouse_HMG_3	14	1	-	6.1820391924322875	-0.19990697399462332	TTTGAATGATATACAGG
chr10	4711229	4711230	chr10:4711230:C:T	rs11252674	C	T	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr10	4768368	4768369	chr10:4768369:A:G	rs1901633	A	G	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr10	4768388	4768389	chr10:4768389:T:C	rs72768268	T	C	T	Sox3.mouse_HMG_3	16	1	-	3.4769014981209634	3.512841954573489	TGTGGATTCCATTCACA
chr10	4808446	4808447	chr10:4808447:G:A	rs2961618	G	A	g	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr10	4813282	4813283	chr10:4813283:T:C	rs2924281	T	C	T	Sox3.mouse_HMG_3	2	1	+	5.515378461147227	-1.0905006570837015	TATGAGTTGCATACATA
chr10	4868560	4868561	chr10:4868561:G:A	rs4880694	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr10	4868568	4868569	chr10:4868569:G:A	rs4880695	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr10	4883269	4883270	chr10:4883270:G:A	rs189361597	G	A	g	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr10	4909777	4909778	chr10:4909778:G:A	rs11252826	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr10	5265480	5265481	chr10:5265481:C:G	rs4881420	C	G	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr10	5610273	5610274	chr10:5610274:G:C	rs7924096	G	C	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr10	5610313	5610314	chr10:5610314:C:T	rs7896078	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	5851304	5851305	chr10:5851305:A:C	rs7894083	A	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr10	5958904	5958905	chr10:5958905:A:G	rs8177709	A	G	A	Sox3.mouse_HMG_3	15	1	-	5.613152387605993	0.8987589758909249	GAAGAATGCAAGTCATG
chr10	5958931	5958932	chr10:5958932:G:A	rs8177708	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr10	6146044	6146045	chr10:6146045:G:A	rs4750017	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr10	6146057	6146058	chr10:6146058:T:C	rs4747890	T	C	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr10	6197523	6197524	chr10:6197524:A:G	rs10795869	A	G	A	Sox3.mouse_HMG_3	15	1	-	3.0606687050565453	-1.6537247066585232	AAAGAAATACAGTCATG
chr10	6245731	6245732	chr10:6245732:G:A	rs7906455	G	A	A	Sox3.mouse_HMG_3	3	1	+	5.148477792038541	-0.63308709549069	TTTGAAGGCTAGTCAAG
chr10	6410599	6410600	chr10:6410600:T:G	rs73621325	T	G	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr10	6459225	6459226	chr10:6459226:C:T	rs7099451	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr10	6603780	6603781	chr10:6603781:G:A	rs74113562	G	A	G	Sox3.mouse_HMG_3	7	1	+	2.3098178324162992	-4.243730882241428	TTTGAACGTTATTCCTA
chr10	6900473	6900474	chr10:6900474:T:C	rs34253260	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr10	6973773	6973774	chr10:6973774:A:G	rs11254915	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr10	7186589	7186590	chr10:7186590:A:G	rs113414258	A	G	A	Sox3.mouse_HMG_3	14	1	+	1.5087446167216918	-4.873201549705219	CAGGGATTACAGTCATG
chr10	7345860	7345861	chr10:7345861:C:T	rs61837686	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr10	7429050	7429051	chr10:7429051:T:A	rs13377145	T	A	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr10	7483431	7483432	chr10:7483432:G:C	rs2025569	G	C	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr10	7486758	7486759	chr10:7486759:A:C	rs2245977	A	C	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr10	7546558	7546559	chr10:7546559:G:A	rs17142788	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr10	7546564	7546565	chr10:7546565:G:A	rs10905180	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr10	7605325	7605326	chr10:7605326:C:A	rs1572241	C	A	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr10	7797261	7797262	chr10:7797262:G:C	rs1981015	G	C	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr10	7967340	7967341	chr10:7967341:A:C	rs115419206	A	C	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr10	8059463	8059464	chr10:8059464:A:C	rs3781094	A	C	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr10	8173567	8173568	chr10:8173568:C:G	rs77603728	C	G	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr10	8390463	8390464	chr10:8390464:T:C	rs11255676	T	C	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr10	8554812	8554813	chr10:8554813:C:T	rs7093997	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr10	8581435	8581436	chr10:8581436:C:G	rs66678385	C	G	C	Sox3.mouse_HMG_3	15	1	-	3.642990306270657	2.05118770564883	TTTGAATTACATTTAGT
chr10	8895629	8895630	chr10:8895630:G:A	rs3847419	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	9038062	9038063	chr10:9038063:G:C	rs1891532	G	C	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr10	9165854	9165855	chr10:9165855:A:T	rs11256101	A	T	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr10	9238430	9238431	chr10:9238431:T:C	rs17486892	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr10	9362684	9362685	chr10:9362685:A:G	rs1747733	A	G	G	Sox3.mouse_HMG_3	12	1	+	-0.12810278734034086	-0.39636677393502073	GGTGAGTGGCAGACAAG
chr10	9468463	9468464	chr10:9468464:G:T	rs7093932	G	T	G	Sox3.mouse_HMG_3	0	1	+	0.33319631310585707	0.0642754593061039	GTTAAGTGGCAGTCAAG
chr10	9955086	9955087	chr10:9955087:C:A	rs2225990	C	A	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr10	10040812	10040813	chr10:10040813:G:C	rs17147126	G	C	G	Sox3.mouse_HMG_3	11	1	+	4.0357891769494225	-0.6143855488567148	ATTGAATGCCAGACAAT
chr10	10096205	10096206	chr10:10096206:T:C	rs11256490	T	C	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr10	10096488	10096489	chr10:10096489:A:G	rs11256492	A	G	A	Sox3.mouse_HMG_3	11	1	+	0.7059719985416673	5.356146724347806	CAGGAATTGCAATCAGA
chr10	10138798	10138799	chr10:10138799:A:T	rs72781407	A	T	T	Sox3.mouse_HMG_3	2	1	-	4.173021967679628	-1.5543067466599942	GATGTATGTTATTTATT
chr10	10270458	10270459	chr10:10270459:T:G	rs4749946	T	G	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr10	10650021	10650022	chr10:10650022:A:G	rs11597845	A	G	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr10	10824717	10824718	chr10:10824718:G:A	rs75380866	G	A	G	Sox3.mouse_HMG_3	1	1	+	2.8121431823813507	5.912273118818644	CGTGAATTGCAGCCAGA
chr10	10910268	10910269	chr10:10910269:C:T	rs6602461	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	10910889	10910890	chr10:10910890:G:T	rs11256897	G	T	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr10	11159382	11159383	chr10:11159383:C:T	rs117270900	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	11171220	11171221	chr10:11171221:T:A	rs1745230	T	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr10	11171238	11171239	chr10:11171239:G:C	rs188574793	G	C	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	11224535	11224536	chr10:11224536:C:T	rs11597417	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr10	11425180	11425181	chr10:11425181:G:A	rs141849358	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	11451604	11451605	chr10:11451605:G:A	rs56195594	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr10	11552635	11552636	chr10:11552636:T:C	rs139132141	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr10	11588228	11588229	chr10:11588229:A:G	rs61133364	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr10	11659042	11659043	chr10:11659043:C:A	rs7895283	C	A	c	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr10	11659191	11659192	chr10:11659192:T:A	rs77319087	T	A	t	Sox3.mouse_HMG_3	12	1	+	2.355689542988065	-3.7571213167391653	GATGACAGCTATTCAGG
chr10	11758229	11758230	chr10:11758230:T:G	rs7088450	T	G	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	12043058	12043059	chr10:12043059:C:G	rs552893501	C	G	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr10	12130322	12130323	chr10:12130323:G:A	rs118098886	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr10	12393395	12393396	chr10:12393396:G:A	rs4747982	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr10	12590156	12590157	chr10:12590157:G:A	rs2399880	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr10	12631367	12631368	chr10:12631368:C:T	rs80253933	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr10	12637491	12637492	chr10:12637492:A:G	rs2399866	A	G	A	Sox3.mouse_HMG_3	2	1	-	1.0708579914059162	-5.535021126825016	AGTGAATGGATGTCATA
chr10	12778211	12778212	chr10:12778212:G:A	rs3802569	G	A	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr10	12841419	12841420	chr10:12841420:G:C	rs78906372	G	C	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr10	12942271	12942272	chr10:12942272:G:A	rs928339	G	A	A	Sox3.mouse_HMG_3	9	1	-	1.1103719340998115	1.1180086110915575	GCTGAATTCCAATTATG
chr10	12977782	12977783	chr10:12977783:A:C	rs535073	A	C	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr10	12977803	12977804	chr10:12977804:A:G	rs535018	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.962262406560268	-3.645688234980528	AAAGAATTGCATTTAAA
chr10	13035712	13035713	chr10:13035713:A:C	rs7072705	A	C	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	13115724	13115725	chr10:13115725:T:C	rs114174735	T	C	T	Sox3.mouse_HMG_3	6	1	+	3.465728934633834	-3.1422217069069625	TATAAATGTCTTTCAAA
chr10	13121446	13121447	chr10:13121447:C:T	rs74120677	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr10	13234714	13234715	chr10:13234715:G:T	rs72781307	G	T	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr10	13234750	13234751	chr10:13234751:G:C	rs17152980	G	C	g	Sox3.mouse_HMG_3	16	1	+	4.641425262116128	2.587569006438827	TCTAAATGTCAGTCAAG
chr10	13302570	13302571	chr10:13302571:T:C	rs529382948	T	C	T	Sox3.mouse_HMG_3	10	1	-	1.0093824189808926	-5.598568222559906	GATGAACTGAATTCACA
chr10	13417818	13417819	chr10:13417819:G:A	rs151013334	G	A	G	Sox3.mouse_HMG_3	14	1	+	1.1031708072997854	7.485116973726697	GATGAAAGCCAGTCGGA
chr10	13475379	13475380	chr10:13475380:A:G	rs56890921	A	G	A	Sox3.mouse_HMG_3	2	1	-	0.6387858974823335	-5.967093220748599	AATGTTTGGCAGTCAGA
chr10	13608852	13608853	chr10:13608853:A:G	rs10796100	A	G	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	13628037	13628038	chr10:13628038:T:C	rs11258485	T	C	t	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr10	13628849	13628850	chr10:13628850:A:G	rs7088328	A	G	g	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr10	13685848	13685849	chr10:13685849:T:C	rs11596704	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	13727946	13727947	chr10:13727947:T:C	rs7085729	T	C	C	Sox3.mouse_HMG_3	1	1	-	0.31390952825282725	-2.786220408184466	CAGGAAAGGCAGTCAAA
chr10	13741617	13741618	chr10:13741618:T:C	rs2104492	T	C	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr10	13809570	13809571	chr10:13809571:G:A	rs59443904	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr10	13868073	13868074	chr10:13868074:T:C	rs10906525	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr10	13886986	13886987	chr10:13886987:G:A	rs751497	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr10	13927918	13927919	chr10:13927919:A:G	rs4748064	A	G	A	Sox3.mouse_HMG_3	0	1	+	3.6615869371793224	4.486870838325666	ACTGAATTGTATTTAGA
chr10	13963987	13963988	chr10:13963988:C:A	rs750741	C	A	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	14009148	14009149	chr10:14009149:C:A	rs76099388	C	A	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr10	14137589	14137590	chr10:14137590:A:G	rs114780664	A	G	A	Sox3.mouse_HMG_3	15	1	-	3.1651660061752764	-1.5492274055397917	CATGAATTTTCATCATG
chr10	14240287	14240288	chr10:14240288:G:A	rs79564130	G	A	G	Sox3.mouse_HMG_3	10	1	-	3.5810745232845473	3.5810745232845473	CATAAATGGCCGTCATG
chr10	14406412	14406413	chr10:14406413:G:A	rs57222898	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr10	14578807	14578808	chr10:14578808:T:C	rs142025900	T	C	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr10	14658243	14658244	chr10:14658244:G:A	rs10906734	G	A	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr10	14658268	14658269	chr10:14658269:T:C	rs17155695	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr10	14658275	14658276	chr10:14658276:C:A	rs78155027	C	A	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr10	14658278	14658279	chr10:14658279:C:G	rs72770509	C	G	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr10	14663845	14663846	chr10:14663846:T:C	rs17259985	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr10	14684505	14684506	chr10:14684506:G:A	rs114562619	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr10	14702127	14702128	chr10:14702128:A:G	rs1023104480	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr10	14713251	14713252	chr10:14713252:G:T	rs74122956	G	T	G	Sox3.mouse_HMG_3	7	1	+	1.2428972015738884	0.3928642593438161	CATAAATGCCAGTAAAG
chr10	14713268	14713269	chr10:14713269:G:A	rs74122957	G	A	g	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr10	14820042	14820043	chr10:14820043:A:G	rs61746971	A	G	A	Sox3.mouse_HMG_3	0	1	-	6.68071170515238	5.225841059815514	TGTGAATCTCATTCAAG
chr10	14887173	14887174	chr10:14887174:A:G	rs17156020	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr10	15134571	15134572	chr10:15134572:C:T	rs17156332	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr10	15199010	15199011	chr10:15199011:C:G	rs11597001	C	G	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr10	15235501	15235502	chr10:15235502:T:C	rs10906869	T	C	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr10	15306897	15306898	chr10:15306898:C:G	rs10752362	C	G	C	Sox3.mouse_HMG_3	5	1	-	2.178610275450489	2.060004533042642	CAGGAGTGTTAGTCATG
chr10	15428858	15428859	chr10:15428859:C:T	rs77627364	C	T	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr10	15780412	15780413	chr10:15780413:T:G	rs933833536	T	G	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr10	15787234	15787235	chr10:15787235:C:T	rs114604854	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr10	15789755	15789756	chr10:15789756:C:T	rs7923731	C	T	T	Sox3.mouse_HMG_3	9	1	+	0.8971992523805605	0.9048359293723065	AAGGAATGTCAGTGATC
chr10	15803420	15803421	chr10:15803421:A:T	rs11253651	A	T	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr10	16148790	16148791	chr10:16148791:A:C	rs2991228	A	C	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr10	16381299	16381300	chr10:16381300:C:A	rs17318653	C	A	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	16933604	16933605	chr10:16933605:C:T	rs74853666	C	T	C	Sox3.mouse_HMG_3	6	1	+	1.9372365499148119	8.545187191455609	GTAGAACTGTATTCATT
chr10	16953483	16953484	chr10:16953484:G:A	rs4747290	G	A	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr10	16969263	16969264	chr10:16969264:T:C	rs11593686	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr10	17019385	17019386	chr10:17019386:T:C	rs7074849	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr10	17041757	17041758	chr10:17041758:A:G	rs12776170	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr10	17055263	17055264	chr10:17055264:C:A	rs10904868	C	A	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr10	17117948	17117949	chr10:17117949:C:T	rs12245964	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr10	17213689	17213690	chr10:17213690:C:T	rs72775098	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	17237517	17237518	chr10:17237518:C:T	rs3249	C	T	C	Sox3.mouse_HMG_3	7	1	-	6.83431310522651	0.2807643905687829	TTTTAATGGTATTCAAA
chr10	17354003	17354004	chr10:17354004:C:T	rs7897402	C	T	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr10	17354016	17354017	chr10:17354017:T:C	rs3740159	T	C	T	Sox3.mouse_HMG_3	10	1	-	4.082029456957562	-2.5259211845832357	AAAGAACTGTATTCATT
chr10	17384553	17384554	chr10:17384554:T:C	rs75314980	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr10	17409285	17409286	chr10:17409286:A:G	rs746569	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr10	17409308	17409309	chr10:17409309:A:G	rs746570	A	G	A	Sox3.mouse_HMG_3	10	1	+	1.680803238712472	-4.927147402828325	CATGTTTTATATTCATT
chr10	17409324	17409325	chr10:17409325:G:A	rs746571	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	17512464	17512465	chr10:17512465:C:G	rs116238295	C	G	C	Sox3.mouse_HMG_3	11	1	-	3.175465769236439	-1.4747089565697002	AAAGAACTATAGTCATA
chr10	17512482	17512483	chr10:17512483:C:T	rs143899390	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr10	17516585	17516586	chr10:17516586:C:T	rs7069117	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr10	17563117	17563118	chr10:17563118:A:G	rs2186113	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr10	17586880	17586881	chr10:17586881:T:C	rs12772793	T	C	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr10	17586901	17586902	chr10:17586902:T:C	rs12772809	T	C	T	Sox3.mouse_HMG_3	10	1	-	1.3205401699208286	-5.287410471619968	GAGGAAGTCCATTCAGA
chr10	17586905	17586906	chr10:17586906:C:T	rs12771472	C	T	C	Sox3.mouse_HMG_3	6	1	-	1.3205401699208286	1.3205401699208286	GAGGAAGTCCATTCAGA
chr10	17613826	17613827	chr10:17613827:G:A	rs55668235	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr10	17727338	17727339	chr10:17727339:A:G	rs2688793	A	G	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr10	17788871	17788872	chr10:17788872:G:A	rs991271597	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr10	17920486	17920487	chr10:17920487:G:A	rs35434414	G	A	G	Sox3.mouse_HMG_3	1	1	-	0.592111019766622	1.798893725433423	CCGGAATTACAGTCAGG
chr10	17964832	17964833	chr10:17964833:C:T	rs12359511	C	T	c	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr10	18090358	18090359	chr10:18090359:A:G	rs7912811	A	G	A	Sox3.mouse_HMG_3	11	1	-	1.3932781206380054	-4.69133270546394	TCTGTATGCCATTAATG
chr10	18100926	18100927	chr10:18100927:G:C	rs16916853	G	C	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr10	18143555	18143556	chr10:18143556:T:A	rs10764320	T	A	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr10	18146086	18146087	chr10:18146087:C:T	rs1331330	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr10	18158560	18158561	chr10:18158561:A:G	rs74793146	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr10	18195556	18195557	chr10:18195557:G:C	rs16916953	G	C	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr10	18215117	18215118	chr10:18215118:G:A	rs56405917	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr10	18215140	18215141	chr10:18215141:T:G	chr10:18215141:T:G	T	G	T	Sox3.mouse_HMG_3	15	1	+	1.0441347806085717	-2.07845603048467	CCAGTATGGTATTCATG
chr10	18252244	18252245	chr10:18252245:G:A	rs368351076	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr10	18342515	18342516	chr10:18342516:A:G	rs7083127	A	G	G	Sox3.mouse_HMG_3	16	1	+	2.140518707759009	2.1764591642115345	AATTAATTTTAGTCCTA
chr10	18387557	18387558	chr10:18387558:T:A	rs7074429	T	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr10	18650537	18650538	chr10:18650538:T:A	rs7095666	T	A	A	Sox3.mouse_HMG_3	1	1	-	1.4448977589185412	-1.5251790492705535	CATGATTTGCATTCTAG
chr10	18730865	18730866	chr10:18730866:C:G	rs117994909	C	G	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr10	19147791	19147792	chr10:19147792:G:C	rs12773103	G	C	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr10	19184870	19184871	chr10:19184871:A:G	rs78667503	A	G	A	Sox3.mouse_HMG_3	2	1	-	5.763563619225323	-0.8423154990056084	GTTGAATGTCATTAAAT
chr10	19579616	19579617	chr10:19579617:A:G	rs7075351	A	G	G	Sox3.mouse_HMG_3	0	1	-	4.404997054665485	2.950126409328621	TATGCATTATATTCTTG
chr10	19638635	19638636	chr10:19638636:A:G	rs76296736	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	19843715	19843716	chr10:19843716:A:T	rs72784107	A	T	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	19850890	19850891	chr10:19850891:A:C	rs11594918	A	C	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr10	19947801	19947802	chr10:19947802:A:G	rs12217898	A	G	A	Sox3.mouse_HMG_3	12	1	-	3.4112526055573795	-2.7816009618433872	TATTAATATTAGTCATG
chr10	19994158	19994159	chr10:19994159:G:T	rs12779581	G	T	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr10	20034645	20034646	chr10:20034646:C:A	rs7085809	C	A	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr10	20147432	20147433	chr10:20147433:T:G	chr10:20147433:T:G	T	G	T	Sox3.mouse_HMG_3	8	1	+	4.276195011991403	4.981097425585441	TTTGAAGTTCATTCAAT
chr10	20147447	20147448	chr10:20147448:G:C	rs4504970	G	C	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr10	20173388	20173389	chr10:20173389:A:G	rs79843612	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr10	20228944	20228945	chr10:20228945:G:A	rs11011891	G	A	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr10	20229470	20229471	chr10:20229471:A:C	rs147746923	A	C	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr10	20743297	20743298	chr10:20743298:A:G	rs912799	A	G	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr10	20772687	20772688	chr10:20772688:A:G	rs77836077	A	G	A	Sox3.mouse_HMG_3	10	1	-	3.1344135700935416	3.1344135700935416	TATGAATGCTTTTAAAA
chr10	20891066	20891067	chr10:20891067:T:C	rs3791204	T	C	T	Sox3.mouse_HMG_3	11	1	+	2.126578409884813	-3.958032416217132	TGTGAATAATATTGATG
chr10	20992280	20992281	chr10:20992281:T:C	rs7915437	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr10	20994397	20994398	chr10:20994398:G:T	rs77314108	G	T	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr10	21056001	21056002	chr10:21056002:T:A	rs2119240	T	A	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr10	21255714	21255715	chr10:21255715:C:T	rs67484996	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	21521688	21521689	chr10:21521689:A:C	rs4083949	A	C	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr10	21672267	21672268	chr10:21672268:G:A	rs74672753	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr10	22321612	22321613	chr10:22321613:G:C	chr10:22321613:G:C	G	C	g	Sox3.mouse_HMG_3	8	1	-	2.7728237862954392	3.215606454973371	AATGAATGCGAGCCAAG
chr10	22321632	22321633	chr10:22321633:G:A	chr10:22321633:G:A	G	A	g	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr10	22429556	22429557	chr10:22429557:G:T	rs75723675	G	T	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr10	22600890	22600891	chr10:22600891:T:C	rs2559520	T	C	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr10	22658096	22658097	chr10:22658097:A:G	rs7075499	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr10	22680577	22680578	chr10:22680578:T:G	chr10:22680578:T:G	T	G	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	22701498	22701499	chr10:22701499:A:C	rs7079078	A	C	C	Sox3.mouse_HMG_3	13	1	-	0.11260033552118842	0.11260033552118842	GAAGAATGCCATTTCTG
chr10	22702457	22702458	chr10:22702458:T:C	rs180866541	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr10	22803526	22803527	chr10:22803527:A:G	rs11013135	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr10	23352534	23352535	chr10:23352535:T:C	rs11013412	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr10	23437846	23437847	chr10:23437847:A:G	rs1995981	A	G	G	Sox3.mouse_HMG_3	2	1	-	4.681900778262102	-1.923978339968829	TGTGAATGCTAGCCAGA
chr10	23474988	23474989	chr10:23474989:A:C	rs4748897	A	C	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr10	23884682	23884683	chr10:23884683:A:T	rs10764431	A	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr10	24040335	24040336	chr10:24040336:C:A	rs34267086	C	A	C	Sox3.mouse_HMG_3	13	1	+	0.9108138784945424	-5.471822795482835	TTGGAATGCTCTTCATT
chr10	24040349	24040350	chr10:24040350:T:C	rs17501790	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr10	24153677	24153678	chr10:24153678:A:C	rs74588276	A	C	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr10	24183872	24183873	chr10:24183873:T:C	rs7917155	T	C	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	24310287	24310288	chr10:24310288:A:T	rs12249363	A	T	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	24643118	24643119	chr10:24643119:C:T	rs73606531	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	24763179	24763180	chr10:24763180:C:T	rs4748978	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr10	24812201	24812202	chr10:24812202:A:G	rs961161320	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	24848842	24848843	chr10:24848843:A:C	rs1045873	A	C	A	Sox3.mouse_HMG_3	5	1	+	3.081943988264417	-3.525496676214293	AAAAAATGTTATTCAGA
chr10	24891989	24891990	chr10:24891990:G:A	rs10828718	G	A	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr10	24985058	24985059	chr10:24985059:G:A	rs2279547	G	A	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr10	25379255	25379256	chr10:25379256:G:A	rs1754250	G	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr10	26169676	26169677	chr10:26169677:C:T	rs79925422	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr10	26309953	26309954	chr10:26309954:G:A	rs60698538	G	A	G	Sox3.mouse_HMG_3	7	1	+	9.668054049460462	3.1145053348027325	AATAAATGTTATTCAAA
chr10	26393970	26393971	chr10:26393971:A:G	rs12413535	A	G	A	Sox3.mouse_HMG_3	3	1	-	1.0385893262996668	1.1955930751093313	GCTTAATGAGATTCATT
chr10	26447548	26447549	chr10:26447549:C:T	rs11015114	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr10	26640044	26640045	chr10:26640045:C:T	rs1148161	C	T	-	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	26689503	26689504	chr10:26689504:A:G	rs10764634	A	G	G	Sox3.mouse_HMG_3	14	1	+	5.600247347375694	-0.7816988190512164	CATGAATGGGGTTCATG
chr10	26689513	26689514	chr10:26689514:G:A	rs9418574	G	A	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr10	26806042	26806043	chr10:26806043:G:C	rs899372	G	C	G	Sox3.mouse_HMG_3	13	1	-	0.25364784213180047	-6.353612768330219	GATGCATTCCAGTCTGA
chr10	26915150	26915151	chr10:26915151:A:G	rs1750263	A	G	-	Sox3.mouse_HMG_3	5	1	+	4.193589515955579	-2.295245406115286	AATGAACTTAATTCATA
chr10	26952404	26952405	chr10:26952405:A:G	rs112175262	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr10	26988380	26988381	chr10:26988381:G:A	rs10829153	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr10	27390886	27390887	chr10:27390887:C:A	rs663263	C	A	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr10	27625378	27625379	chr10:27625379:C:G	rs2642308	C	G	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr10	27805489	27805490	chr10:27805490:C:G	rs2492906	C	G	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr10	27997737	27997738	chr10:27997738:A:G	rs9299595	A	G	A	Sox3.mouse_HMG_3	5	1	+	3.765005821513701	-2.723829100557163	AATAAATGGTGTTCAAA
chr10	28331919	28331920	chr10:28331920:C:T	rs114630152	C	T	C	Sox3.mouse_HMG_3	11	1	-	4.19543415314173	-0.45474057266440826	GATGAATTGTAGGAATA
chr10	28331943	28331944	chr10:28331944:C:T	rs17685697	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr10	28761798	28761799	chr10:28761799:A:G	rs1272603	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr10	28858900	28858901	chr10:28858901:T:G	rs12265370	T	G	T	Sox3.mouse_HMG_3	4	1	-	3.3229131839145465	-3.4276283242048384	AATAAATGCTATTTAAA
chr10	28988832	28988833	chr10:28988833:G:A	rs10826550	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr10	29026259	29026260	chr10:29026260:T:C	rs74128132	T	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr10	29026284	29026285	chr10:29026285:C:T	rs74128134	C	T	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr10	29133282	29133283	chr10:29133283:T:C	rs545545	T	C	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr10	29265454	29265455	chr10:29265455:C:A	rs11007491	C	A	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr10	29344678	29344679	chr10:29344679:G:A	rs79573091	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr10	29398550	29398551	chr10:29398551:A:C	rs7070414	A	C	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr10	29491538	29491539	chr10:29491539:C:T	rs11007622	C	T	c	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr10	29542819	29542820	chr10:29542820:T:C	rs7899515	T	C	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr10	29588035	29588036	chr10:29588036:G:T	rs192311900	G	T	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr10	29829280	29829281	chr10:29829281:C:T	rs7924138	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr10	30029415	30029416	chr10:30029416:C:T	rs11813359	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr10	30364472	30364473	chr10:30364473:A:G	rs7094026	A	G	.	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr10	30423974	30423975	chr10:30423975:T:C	rs664651	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr10	30566940	30566941	chr10:30566941:C:T	rs4592333	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr10	30603769	30603770	chr10:30603770:G:A	rs16931771	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr10	30682766	30682767	chr10:30682767:T:A	rs10454471	T	A	t	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	30764352	30764353	chr10:30764353:C:G	rs903276	C	G	c	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr10	30828016	30828017	chr10:30828017:G:A	rs117379641	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr10	30828040	30828041	chr10:30828041:A:G	rs7904091	A	G	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr10	31140473	31140474	chr10:31140474:G:T	rs79708524	G	T	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr10	31204207	31204208	chr10:31204208:T:G	rs936572806	T	G	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr10	31404806	31404807	chr10:31404807:A:G	chr10:31404807:A:G	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr10	31649272	31649273	chr10:31649273:G:T	rs11008567	G	T	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr10	31669573	31669574	chr10:31669574:G:T	rs146164830	G	T	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr10	31804564	31804565	chr10:31804565:G:A	rs12242742	G	A	G	Sox3.mouse_HMG_3	9	1	+	4.455757814977696	3.7414681978439415	GAGGAATTCGAGTCATG
chr10	32112233	32112234	chr10:32112234:C:T	rs211429	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	33010384	33010385	chr10:33010385:G:A	rs7901543	G	A	A	Sox3.mouse_HMG_3	13	1	-	3.626746571329491	-2.9805140391325295	GGAGAATGTCATACATG
chr10	33032895	33032896	chr10:33032896:A:C	rs534102122	A	C	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	33194168	33194169	chr10:33194169:C:A	rs41511045	C	A	C	Sox3.mouse_HMG_3	9	1	+	5.295615600628389	-0.7586030238799288	GATGAAGTACAGTCAAC
chr10	33211923	33211924	chr10:33211924:A:G	rs74571312	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr10	33228718	33228719	chr10:33228719:A:G	rs1331317	A	G	G	Sox3.mouse_HMG_3	12	1	-	3.119645582162201	-3.073207985238565	GTTGAATGATAGTCCCA
chr10	33233924	33233925	chr10:33233925:T:C	rs75318989	T	C	T	Sox3.mouse_HMG_3	6	1	+	1.7177346382360879	-4.890216003304709	CATCAATGCTATTCTAG
chr10	33240904	33240905	chr10:33240905:C:G	rs2269089	C	G	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr10	33241121	33241122	chr10:33241122:A:G	rs2269088	A	G	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr10	33241156	33241157	chr10:33241157:C:T	rs2269087	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr10	33241158	33241159	chr10:33241159:C:T	rs771213115	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	33273761	33273762	chr10:33273762:G:C	rs191289602	G	C	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr10	33304680	33304681	chr10:33304681:A:G	rs4934896	A	G	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr10	33304893	33304894	chr10:33304894:A:G	rs11597915	A	G	A	Sox3.mouse_HMG_3	0	1	+	2.0252973288375165	2.8505812299838604	AAGCAATGACATTCAAA
chr10	33307117	33307118	chr10:33307118:A:T	rs4934901	A	T	A	Sox3.mouse_HMG_3	12	1	-	2.781899715187127	-3.330911144540104	CATGAATCCTAGTTATA
chr10	33573798	33573799	chr10:33573799:G:A	rs3851083	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr10	33612831	33612832	chr10:33612832:G:T	rs116810669	G	T	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr10	33735861	33735862	chr10:33735862:T:A	rs73267245	T	A	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr10	33747169	33747170	chr10:33747170:G:A	rs2812669	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	33747179	33747180	chr10:33747180:A:G	rs2812670	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr10	33914024	33914025	chr10:33914025:A:G	rs2800811	A	G	-	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr10	33914031	33914032	chr10:33914032:C:T	rs113006639	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr10	33941396	33941397	chr10:33941397:A:G	rs224747	A	G	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr10	34081961	34081962	chr10:34081962:G:A	rs149676255	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr10	34195409	34195410	chr10:34195410:C:T	rs1274476	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr10	34216935	34216936	chr10:34216936:T:C	rs12778087	T	C	T	Sox3.mouse_HMG_3	15	1	-	9.38894838705217	8.53016704019575	GAAGAATGTCATTCAAT
chr10	34291962	34291963	chr10:34291963:G:A	rs3891844	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	34505612	34505613	chr10:34505613:A:T	rs111457248	A	T	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr10	34637871	34637872	chr10:34637872:C:T	rs958606622	C	T	C	Sox3.mouse_HMG_3	0	1	+	3.9316827415668074	5.386553386903673	CGTGAAATATATTCAAA
chr10	34637893	34637894	chr10:34637894:G:A	rs114834971	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr10	34727696	34727697	chr10:34727697:C:T	rs4339985	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr10	34806658	34806659	chr10:34806659:G:C	rs7095898	G	C	C	Sox3.mouse_HMG_3	13	1	-	8.47014060705531	1.862879996593289	AATGGATGCTATTCAGA
chr10	34830330	34830331	chr10:34830331:A:G	rs117951103	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr10	34919139	34919140	chr10:34919140:G:A	rs17496856	G	A	G	Sox3.mouse_HMG_3	7	1	+	2.2453720319664656	-4.308176682691261	GTTTAATGAGATTCATT
chr10	34998721	34998722	chr10:34998722:T:G	rs17582416	T	G	.	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	35240118	35240119	chr10:35240119:C:T	rs4934541	C	T	c	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr10	35253681	35253682	chr10:35253682:G:T	rs12240638	G	T	G	Sox3.mouse_HMG_3	13	1	-	6.146771973710965	-0.23586470026641004	TATGAATGGTCTACATG
chr10	35762704	35762705	chr10:35762705:A:T	rs16936320	A	T	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr10	35940880	35940881	chr10:35940881:G:A	rs11010328	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr10	36046704	36046705	chr10:36046705:C:A	rs10764075	C	A	c	Sox3.mouse_HMG_3	9	1	+	3.623915754817282	-2.4303028696910363	AATAAATTACATGCATT
chr10	36046705	36046706	chr10:36046706:A:G	rs10764076	A	G	A	Sox3.mouse_HMG_3	10	1	+	3.623915754817282	-2.9840348867235154	AATAAATTACATGCATT
chr10	36178222	36178223	chr10:36178223:G:C	rs315635	G	C	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr10	36256884	36256885	chr10:36256885:G:C	rs1219598	G	C	G	Sox3.mouse_HMG_3	9	1	-	3.6769979635164884	-1.6629310438580749	AATGATTTTCATTTATG
chr10	36442938	36442939	chr10:36442939:C:T	rs73262513	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	36450602	36450603	chr10:36450603:T:G	chr10:36450603:T:G	T	G	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr10	36511773	36511774	chr10:36511774:A:G	rs2505562	A	G	A	Sox3.mouse_HMG_3	10	1	+	6.999403558495755	0.3914529169549582	TTTGAATTATATGCATT
chr10	36555318	36555319	chr10:36555319:G:A	rs193120047	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr10	36771839	36771840	chr10:36771840:C:T	rs11010852	C	T	T	Sox3.mouse_HMG_3	3	1	+	2.9574913801373848	2.8004876313277203	AATCAATGTTGGTCATG
chr10	37765459	37765460	chr10:37765460:T:C	rs55738335	T	C	.	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr10	37831713	37831714	chr10:37831714:C:T	rs1208731	C	T	c	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	37853331	37853332	chr10:37853332:G:A	rs72791730	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr10	38011178	38011179	chr10:38011179:T:A	rs77552914	T	A	T	Sox3.mouse_HMG_3	11	1	+	1.4309180156740395	-4.653692810427906	CACGTATTGCATTCATC
chr10	38454878	38454879	chr10:38454879:G:A	rs184689448	G	A	.	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr10	38526961	38526962	chr10:38526962:T:A	rs12244200	T	A	.	Sox3.mouse_HMG_3	1	1	-	1.8646822317783565	-1.1053945764107385	AATGTATTCCATTCCAA
chr10	38527724	38527725	chr10:38527725:A:G	rs149329934	A	G	.	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr10	38527731	38527732	chr10:38527732:T:A	rs922968455	T	A	.	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	39455966	39455967	chr10:39455967:C:T	rs1248482900	C	T	.	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr10	41844532	41844533	chr10:41844533:T:C	rs61846559	T	C	.	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr10	41845465	41845466	chr10:41845466:T:A	rs866070375	T	A	.	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr10	41845975	41845976	chr10:41845976:C:T	rs766536860	C	T	.	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr10	41914673	41914674	chr10:41914674:A:C	rs1324953000	A	C	.	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	42080356	42080357	chr10:42080357:T:C	chr10:42080357:T:C	T	C	.	Sox3.mouse_HMG_3	6	1	+	1.7105692007791857	-4.8973814407616105	AATGAATTGAATGCAAT
chr10	42080368	42080369	chr10:42080369:A:C	chr10:42080369:A:C	A	C	.	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr10	42083662	42083663	chr10:42083663:C:G	rs1445915827	C	G	.	Sox3.mouse_HMG_3	3	1	-	4.35018646674832	-2.3993042689567297	ATTGGATTCCATTCAAT
chr10	42593470	42593471	chr10:42593471:T:G	rs75611698	T	G	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	42594589	42594590	chr10:42594590:A:G	rs74137907	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr10	42934865	42934866	chr10:42934866:T:A	rs788273	T	A	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	42959061	42959062	chr10:42959062:G:A	rs78160272	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr10	43111772	43111773	chr10:43111773:C:G	rs3026748	C	G	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr10	43156938	43156939	chr10:43156939:C:T	rs4948704	C	T	C	Sox3.mouse_HMG_3	9	1	-	2.740329860359174	2.0260402432254194	GATGATTTGGAGTCAAA
chr10	43285533	43285534	chr10:43285534:C:T	rs11238502	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr10	43353909	43353910	chr10:43353910:T:C	rs2243492	T	C	T	Sox3.mouse_HMG_3	5	1	-	1.4572761257919007	-5.031558796278963	CATGAATGTCAGTAGTT
chr10	43793522	43793523	chr10:43793523:G:A	rs10899909	G	A	.	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr10	43846183	43846184	chr10:43846184:C:T	rs760023277	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr10	43878091	43878092	chr10:43878092:C:T	rs73275998	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr10	43999209	43999210	chr10:43999210:G:A	rs7091447	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr10	44019681	44019682	chr10:44019682:C:T	rs1492704	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	44099795	44099796	chr10:44099796:G:A	rs12265471	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr10	44376654	44376655	chr10:44376655:A:G	rs148782438	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr10	44390641	44390642	chr10:44390642:G:C	rs754619	G	C	G	Sox3.mouse_HMG_3	8	1	-	2.2146119345928423	2.6573946032707743	GATGGAGGCTAGTCATC
chr10	44510949	44510950	chr10:44510950:G:A	rs1889923	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr10	44628143	44628144	chr10:44628144:A:C	rs114573477	A	C	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr10	44628487	44628488	chr10:44628488:C:G	rs12249457	C	G	C	Sox3.mouse_HMG_3	9	1	-	0.9043015229309019	6.244230530305466	TGTGAAATAGAGTCATG
chr10	44673360	44673361	chr10:44673361:T:C	rs77264703	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	44807015	44807016	chr10:44807016:C:G	rs1812367	C	G	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	45122579	45122580	chr10:45122580:C:G	rs6593460	C	G	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr10	45292712	45292713	chr10:45292713:G:A	rs58167894	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr10	45369511	45369512	chr10:45369512:A:C	rs7081004	A	C	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	45447263	45447264	chr10:45447264:T:G	rs17157798	T	G	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr10	46023747	46023748	chr10:46023748:T:C	rs192466646	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr10	46256606	46256607	chr10:46256607:G:C	rs7905972	G	C	.	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr10	46283387	46283388	chr10:46283388:C:T	rs11259769	C	T	.	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr10	46530174	46530175	chr10:46530175:A:G	rs28444926	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr10	47134283	47134284	chr10:47134284:C:T	rs111799555	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr10	47185005	47185006	chr10:47185006:G:A	rs115971340	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr10	47185058	47185059	chr10:47185059:C:A	rs76386056	C	A	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr10	47315637	47315638	chr10:47315638:G:A	rs79640695	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr10	47496238	47496239	chr10:47496239:C:T	rs1304773031	C	T	c	Sox3.mouse_HMG_3	8	1	+	3.16252058445909	2.900400839542984	GGGAAATGCCATTCATA
chr10	47726846	47726847	chr10:47726847:G:A	rs28407202	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr10	48222564	48222565	chr10:48222565:A:G	rs12252237	A	G	A	Sox3.mouse_HMG_3	16	1	-	2.624178256095484	1.7572515166232052	TCTGAATTCTATTGAGT
chr10	48242953	48242954	chr10:48242954:T:C	rs17697566	T	C	T	Sox3.mouse_HMG_3	1	1	-	8.931285118347969	5.831155181910677	TATGAATTGTGGTCATT
chr10	48271773	48271774	chr10:48271774:T:C	rs4838403	T	C	C	Sox3.mouse_HMG_3	5	1	-	5.760621549804467	-0.7282133722663975	CCTGAATTGTATTCACC
chr10	48309555	48309556	chr10:48309556:A:G	rs73293130	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr10	48317821	48317822	chr10:48317822:C:T	rs56195836	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	48383674	48383675	chr10:48383675:C:T	rs2698761	C	T	C	Sox3.mouse_HMG_3	3	1	-	5.754763157717363	-0.026801729811865904	AATGAATGGCACTGATG
chr10	48444173	48444174	chr10:48444174:T:C	rs61838704	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr10	48460197	48460198	chr10:48460198:T:G	rs10776604	T	G	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr10	48532392	48532393	chr10:48532393:A:G	rs1900021	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr10	48572519	48572520	chr10:48572520:G:A	rs7358134	G	A	A	Sox3.mouse_HMG_3	13	1	-	-0.09204161377908515	-6.699302224241105	AATGCATTGCAGGCAGG
chr10	48636785	48636786	chr10:48636786:G:C	rs72787259	G	C	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr10	48733021	48733022	chr10:48733022:A:G	rs7076662	A	G	G	Sox3.mouse_HMG_3	6	1	-	6.82288769171541	0.2149370501746135	CATTAATTTCATTCAAG
chr10	48739437	48739438	chr10:48739438:T:C	rs17771583	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr10	48935540	48935541	chr10:48935541:A:G	rs150168946	A	G	A	Sox3.mouse_HMG_3	6	1	-	8.466534866390674	1.858584224849875	CATGAATGCTATTAAAG
chr10	48935545	48935546	chr10:48935546:T:C	rs10776658	T	C	T	Sox3.mouse_HMG_3	1	1	-	8.466534866390674	5.36640492995338	CATGAATGCTATTAAAG
chr10	48945928	48945929	chr10:48945929:T:G	chr10:48945929:T:G	T	G	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr10	49005079	49005080	chr10:49005080:G:A	rs2264555	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	49090428	49090429	chr10:49090429:C:T	rs79975322	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr10	49090475	49090476	chr10:49090476:A:G	rs7074818	A	G	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr10	49243962	49243963	chr10:49243963:G:C	rs7084397	G	C	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr10	49277477	49277478	chr10:49277478:T:G	rs7911514	T	G	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr10	49335062	49335063	chr10:49335063:C:T	rs112896547	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr10	49349405	49349406	chr10:49349406:T:C	rs143094080	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr10	50016029	50016030	chr10:50016030:C:T	rs544662698	C	T	.	Sox3.mouse_HMG_3	7	1	-	3.16252058445909	-3.391028130198639	GGGAAATGCCATTCATA
chr10	50553349	50553350	chr10:50553350:G:A	rs2024872	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr10	50604995	50604996	chr10:50604996:G:A	rs4935736	G	A	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	51685392	51685393	chr10:51685393:C:T	rs7913405	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr10	51907715	51907716	chr10:51907716:G:A	rs7081919	G	A	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr10	52194431	52194432	chr10:52194432:A:G	rs11001130	A	G	A	Sox3.mouse_HMG_3	15	1	+	9.667462173657324	8.808680826800902	GATGACTGTTATTCAAA
chr10	52207041	52207042	chr10:52207042:C:A	rs7898960	C	A	C	Sox3.mouse_HMG_3	3	1	+	2.534450135862171	3.5023759840379913	TTGCAATGGCATTCATG
chr10	52400757	52400758	chr10:52400758:G:C	rs74133332	G	C	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr10	52509017	52509018	chr10:52509018:G:A	rs1628654	G	A	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr10	52509039	52509040	chr10:52509040:T:G	rs139832802	T	G	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	52621819	52621820	chr10:52621820:A:C	rs113386981	A	C	A	Sox3.mouse_HMG_3	4	1	+	1.5873855301803834	-5.163155977939002	GATAAATTGTTTTCAGT
chr10	52664092	52664093	chr10:52664093:C:G	rs12258451	C	G	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr10	52664139	52664140	chr10:52664140:C:T	rs12258467	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr10	52744839	52744840	chr10:52744840:C:T	rs4935045	C	T	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr10	52812377	52812378	chr10:52812378:T:C	rs11003182	T	C	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr10	52816809	52816810	chr10:52816810:C:T	rs7476743	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr10	53233017	53233018	chr10:53233018:C:T	rs1903945	C	T	T	Sox3.mouse_HMG_3	8	1	+	2.4729531205184636	2.2108333756023577	GTTGCATGCTATTTATA
chr10	53396543	53396544	chr10:53396544:A:C	rs10825015	A	C	C	Sox3.mouse_HMG_3	5	1	+	0.32745046460002114	-6.2799901998786885	CATGAAATCAATTCAGG
chr10	53786842	53786843	chr10:53786843:G:C	rs144752030	G	C	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr10	53836741	53836742	chr10:53836742:A:G	rs1900455	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr10	54127073	54127074	chr10:54127074:C:T	rs10825243	C	T	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr10	54205355	54205356	chr10:54205356:T:A	rs7090306	T	A	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr10	54902842	54902843	chr10:54902843:G:T	rs1454471	G	T	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr10	55159116	55159117	chr10:55159117:C:T	rs2589443	C	T	C	Sox3.mouse_HMG_3	13	1	+	0.9298084265722688	-5.677452183889751	AGTGAATGGTGGTCTTG
chr10	55159127	55159128	chr10:55159128:A:G	rs2589444	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr10	55667796	55667797	chr10:55667797:T:C	rs10825560	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	55667804	55667805	chr10:55667805:G:A	rs767039412	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr10	55793506	55793507	chr10:55793507:A:G	rs73262547	A	G	a	Sox3.mouse_HMG_3	12	1	-	2.203522289656624	-3.989331277744143	TTTGAATGCTTTTTATA
chr10	56084828	56084829	chr10:56084829:A:C	rs7097455	A	C	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr10	56086226	56086227	chr10:56086227:A:G	rs7072284	A	G	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr10	56294368	56294369	chr10:56294369:C:A	rs4272725	C	A	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	56297175	56297176	chr10:56297176:G:A	rs113184086	G	A	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr10	57695545	57695546	chr10:57695546:G:A	rs77446829	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr10	58007838	58007839	chr10:58007839:G:A	rs1029921	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr10	58137771	58137772	chr10:58137772:C:A	rs17635621	C	A	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr10	58475720	58475721	chr10:58475721:C:T	rs117008571	C	T	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr10	58514288	58514289	chr10:58514289:C:A	rs10763553	C	A	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr10	58546625	58546626	chr10:58546626:T:G	rs1649065	T	G	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr10	58554422	58554423	chr10:58554423:A:C	rs1658446	A	C	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr10	58653435	58653436	chr10:58653436:C:A	rs2393462	C	A	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr10	58704023	58704024	chr10:58704024:A:G	rs55769863	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr10	58754987	58754988	chr10:58754988:G:A	rs984390679	G	A	G	Sox3.mouse_HMG_3	3	1	+	2.542212251991396	-3.239352635537834	TATGTATTGCAGTCCTT
chr10	58773604	58773605	chr10:58773605:C:T	rs10826239	C	T	T	Sox3.mouse_HMG_3	9	1	+	7.268392682841096	7.276029359832843	GTGGAATTGCAGTCATG
chr10	58797545	58797546	chr10:58797546:G:A	rs114030575	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr10	58886001	58886002	chr10:58886002:A:G	rs34157994	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	58943708	58943709	chr10:58943709:A:G	rs1460737380	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr10	59133611	59133612	chr10:59133612:G:T	rs1975191	G	T	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr10	59557203	59557204	chr10:59557204:T:C	rs1453457794	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr10	59589456	59589457	chr10:59589457:T:C	rs115225219	T	C	T	Sox3.mouse_HMG_3	5	1	-	2.4761543086051776	-4.012680613465687	AATCAATGGTAGTTATT
chr10	59896244	59896245	chr10:59896245:T:A	rs12573055	T	A	T	Sox3.mouse_HMG_3	0	1	-	3.2851824813346022	3.841545528681192	AATGAAATGTATGCATT
chr10	59898662	59898663	chr10:59898663:T:C	rs1406523784	T	C	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr10	59911226	59911227	chr10:59911227:G:T	rs61845882	G	T	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	60032814	60032815	chr10:60032815:C:T	rs10994158	C	T	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr10	60032815	60032816	chr10:60032816:C:T	rs567038670	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr10	60032845	60032846	chr10:60032846:C:T	rs12257592	C	T	C	Sox3.mouse_HMG_3	3	1	-	4.690520295495134	-1.0910445920340959	AATGAATGACCTTCCTG
chr10	60042967	60042968	chr10:60042968:A:C	rs9888034	A	C	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr10	60376678	60376679	chr10:60376679:A:G	rs147825794	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr10	60434599	60434600	chr10:60434600:C:T	rs947959011	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr10	60629474	60629475	chr10:60629475:A:G	rs7069157	A	G	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	60723501	60723502	chr10:60723502:A:T	rs10994481	A	T	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr10	60780029	60780030	chr10:60780030:C:G	rs2260179	C	G	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr10	60808888	60808889	chr10:60808889:G:A	rs74467796	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr10	60808902	60808903	chr10:60808903:C:T	rs1871444	C	T	C	Sox3.mouse_HMG_3	4	1	-	6.14612544914728	12.52894217714135	GTTGGATTACATTCAAA
chr10	60852955	60852956	chr10:60852956:A:G	rs7091284	A	G	A	Sox3.mouse_HMG_3	9	1	-	2.0956718713896985	2.0880351943979516	TTTGAAAGCTCTTCATG
chr10	60901180	60901181	chr10:60901181:A:C	rs10821852	A	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr10	60938205	60938206	chr10:60938206:G:A	rs1897369	G	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr10	60944354	60944355	chr10:60944355:A:G	rs537314059	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr10	60979063	60979064	chr10:60979064:C:T	rs78547823	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr10	61280571	61280572	chr10:61280572:A:G	rs10994703	A	G	A	Sox3.mouse_HMG_3	15	1	-	2.5851732947271215	-2.1292201169879466	TATTTATTGCATTCATC
chr10	61346945	61346946	chr10:61346946:G:A	rs1014062640	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	61592044	61592045	chr10:61592045:C:A	rs2606117	C	A	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	61628284	61628285	chr10:61628285:T:C	rs78933103	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr10	61666315	61666316	chr10:61666316:T:C	rs10994865	T	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr10	61684669	61684670	chr10:61684670:G:A	rs72821788	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr10	61700527	61700528	chr10:61700528:A:C	chr10:61700528:A:C	A	C	A	Sox3.mouse_HMG_3	5	1	+	8.139638460833169	1.5321977963544575	GATGAATGGCATTCTCA
chr10	61792014	61792015	chr10:61792015:G:A	rs7070797	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr10	61890996	61890997	chr10:61890997:A:G	rs73272175	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr10	62341588	62341589	chr10:62341589:G:T	rs10740073	G	T	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr10	62443986	62443987	chr10:62443987:A:C	rs80060819	A	C	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr10	62514182	62514183	chr10:62514183:G:A	rs1878261	G	A	A	Sox3.mouse_HMG_3	5	1	-	6.275697306040696	6.275697306040696	TTTGACTTGCATTCAAA
chr10	62651527	62651528	chr10:62651528:C:T	rs10995261	C	T	c	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr10	62849673	62849674	chr10:62849674:A:G	rs10740089	A	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr10	62849698	62849699	chr10:62849699:A:G	rs73277615	A	G	A	Sox3.mouse_HMG_3	14	1	+	-0.12810278734034086	-6.510048953767251	GGTGAGTGGCAGACAAG
chr10	62851627	62851628	chr10:62851628:C:T	rs10740091	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr10	62911515	62911516	chr10:62911516:G:A	rs7920310	G	A	g	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr10	63166740	63166741	chr10:63166741:G:A	rs192780904	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr10	63166775	63166776	chr10:63166776:C:A	rs56378743	C	A	C	Sox3.mouse_HMG_3	1	1	-	1.5658557708740435	1.6959088991222406	TGTGAATTACCTACATG
chr10	63266896	63266897	chr10:63266897:C:G	rs191333012	C	G	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr10	63366534	63366535	chr10:63366535:G:A	rs7092222	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr10	63437548	63437549	chr10:63437549:A:C	rs77494594	A	C	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr10	63468062	63468063	chr10:63468063:C:T	rs114566895	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr10	63504412	63504413	chr10:63504413:G:C	rs80211554	G	C	G	Sox3.mouse_HMG_3	13	1	-	4.325966384025358	-2.281294226436662	TCTTAATGCTATTCAGA
chr10	63682386	63682387	chr10:63682387:C:T	rs145734141	C	T	C	Sox3.mouse_HMG_3	10	1	+	1.7696911455347197	1.7696911455347197	AATGAATGTTCGTGATT
chr10	63821312	63821313	chr10:63821313:A:T	rs2461893	A	T	A	Sox3.mouse_HMG_3	6	1	-	3.390562593294261	-3.3604888918872104	CATGACTTATAATCATG
chr10	63885308	63885309	chr10:63885309:G:T	rs4237287	G	T	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	64215333	64215334	chr10:64215334:A:T	rs4553263	A	T	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr10	64396071	64396072	chr10:64396072:G:A	rs2660093	G	A	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr10	64617242	64617243	chr10:64617243:C:T	rs7921148	C	T	T	Sox3.mouse_HMG_3	15	1	-	2.424080165670534	3.2828615125269547	TATAAATTCCATTCCGG
chr10	64708503	64708504	chr10:64708504:G:C	rs55787819	G	C	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	64828703	64828704	chr10:64828704:G:A	rs190072283	G	A	.	Sox3.mouse_HMG_3	13	1	-	1.087812891364782	-5.519447719097237	CTTGAATTCCAAACATG
chr10	64830169	64830170	chr10:64830170:A:G	rs3894600	A	G	.	Sox3.mouse_HMG_3	15	1	-	2.0027557107075777	-2.7116377010074904	TGTAAGTGCCATTCATT
chr10	65159540	65159541	chr10:65159541:A:T	rs10996247	A	T	A	Sox3.mouse_HMG_3	6	1	-	1.4402536578443934	-5.310797827337078	CATCAATGTTATTGATC
chr10	65296711	65296712	chr10:65296712:C:T	rs2136611	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr10	65414521	65414522	chr10:65414522:A:G	rs10740206	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr10	65528968	65528969	chr10:65528969:A:G	rs1857615	A	G	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	65764996	65764997	chr10:65764997:T:C	rs10822629	T	C	C	Sox3.mouse_HMG_3	6	1	+	2.0814782092555584	-4.52647243228524	CTTTAATGTCAGTCAAT
chr10	65837948	65837949	chr10:65837949:G:A	rs10996702	G	A	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr10	65861546	65861547	chr10:65861547:G:T	rs35503142	G	T	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr10	66020968	66020969	chr10:66020969:G:A	rs10822694	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr10	66321940	66321941	chr10:66321941:C:A	rs72801016	C	A	C	Sox3.mouse_HMG_3	12	1	+	2.9669258233798788	3.046968531053415	GATGGATTATATCCAAG
chr10	66398409	66398410	chr10:66398410:A:G	rs2456740	A	G	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr10	66501616	66501617	chr10:66501617:C:G	rs55856935	C	G	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	66505559	66505560	chr10:66505560:G:A	rs72791600	G	A	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr10	66505567	66505568	chr10:66505568:A:G	rs72791601	A	G	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr10	66819815	66819816	chr10:66819816:T:G	rs61868496	T	G	T	Sox3.mouse_HMG_3	4	1	-	7.315466476745123	0.5649249686257387	TTTAAATTATAGTCATA
chr10	67280659	67280660	chr10:67280660:G:A	rs7078250	G	A	g	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr10	67772617	67772618	chr10:67772618:G:A	rs7914077	G	A	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr10	67841482	67841483	chr10:67841483:T:A	rs11593015	T	A	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	68032180	68032181	chr10:68032181:G:C	rs482806	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	68095405	68095406	chr10:68095406:T:A	rs76717004	T	A	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	68136048	68136049	chr10:68136049:G:A	rs79316877	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr10	68254880	68254881	chr10:68254881:T:C	rs61854803	T	C	C	Sox3.mouse_HMG_3	2	1	+	1.1324984329030725	-5.473380685327859	GATGAAGTCCAGTGATC
chr10	68290211	68290212	chr10:68290212:C:T	rs77728892	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr10	68297603	68297604	chr10:68297604:G:A	rs78267180	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr10	68589214	68589215	chr10:68589215:C:T	rs7908570	C	T	C	Sox3.mouse_HMG_3	7	1	-	2.030132894568469	-4.523415820089259	AGTGAATGTGAATCATT
chr10	68602957	68602958	chr10:68602958:G:A	rs2795886	G	A	G	Sox3.mouse_HMG_3	13	1	-	6.592554234900734	-0.014706375561286844	TATGAATTTTATACACA
chr10	68897412	68897413	chr10:68897413:G:A	rs180972560	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr10	69319644	69319645	chr10:69319645:C:T	rs75171090	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr10	69321965	69321966	chr10:69321966:G:C	rs1242722494	G	C	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr10	69326215	69326216	chr10:69326216:A:C	rs77231906	A	C	A	Sox3.mouse_HMG_3	14	1	+	4.781472802570006	-1.6004733638569046	TATGAATTATATATATA
chr10	69438006	69438007	chr10:69438007:G:A	rs10998776	G	A	A	Sox3.mouse_HMG_3	1	1	-	2.182674684147377	3.389457389814177	TCTGAACTCTATTCACA
chr10	69495076	69495077	chr10:69495077:A:G	rs7094449	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr10	69630698	69630699	chr10:69630699:C:G	rs2306141	C	G	C	Sox3.mouse_HMG_3	7	1	-	2.009460001396726	-4.243984120810664	GGTAAAGGCCATTCATT
chr10	69807254	69807255	chr10:69807255:C:G	rs942571	C	G	C	Sox3.mouse_HMG_3	3	1	-	1.4802600969537836	-5.269230638751269	TGTGAATGTCAGTCCCT
chr10	69874786	69874787	chr10:69874787:G:A	rs9633587	G	A	G	Sox3.mouse_HMG_3	13	1	-	1.8785309819814289	-4.7287296284805915	CATCAATTCCAGCCATG
chr10	69913122	69913123	chr10:69913123:C:T	rs3793832	C	T	T	Sox3.mouse_HMG_3	3	1	-	9.425339885694452	3.643774998165221	GATGGATTGTAGTCATT
chr10	70191404	70191405	chr10:70191405:T:C	rs76577402	T	C	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr10	70339260	70339261	chr10:70339261:G:C	rs71480651	G	C	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr10	70553091	70553092	chr10:70553092:A:G	rs10823562	A	G	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr10	70553141	70553142	chr10:70553142:G:A	rs10823563	G	A	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	70553146	70553147	chr10:70553147:C:G	rs10823564	C	G	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr10	70558433	70558434	chr10:70558434:T:G	rs12413000	T	G	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr10	70649894	70649895	chr10:70649895:G:C	rs10999451	G	C	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr10	70728688	70728689	chr10:70728689:T:C	rs4747091	T	C	C	Sox3.mouse_HMG_3	16	1	-	0.6361669140228261	0.6721073704753517	GCTGACTGGCAGGCATA
chr10	70800114	70800115	chr10:70800115:C:T	rs11516614	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr10	70804123	70804124	chr10:70804124:A:T	rs10823624	A	T	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	70852278	70852279	chr10:70852279:T:C	rs79019914	T	C	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	70886208	70886209	chr10:70886209:G:A	rs57037268	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr10	71093060	71093061	chr10:71093061:C:T	rs80116970	C	T	C	Sox3.mouse_HMG_3	8	1	+	7.932168191740607	7.670048446824501	AATGAATGCTAGGCAAG
chr10	71093086	71093087	chr10:71093087:A:G	rs1891161	A	G	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr10	71294324	71294325	chr10:71294325:C:A	rs946977	C	A	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr10	71307894	71307895	chr10:71307895:T:A	rs10509333	T	A	T	Sox3.mouse_HMG_3	8	1	-	1.909602343800677	1.8278165773844524	AATGAATGATATGCTGA
chr10	71393517	71393518	chr10:71393518:G:A	rs533896241	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr10	71605150	71605151	chr10:71605151:G:A	rs2166637	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr10	71684684	71684685	chr10:71684685:T:C	rs3861033	T	C	T	Sox3.mouse_HMG_3	5	1	-	2.880039031826236	-3.608795890244629	TATGCATGGCTGTCATT
chr10	71723998	71723999	chr10:71723999:T:C	rs3802712	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr10	71724015	71724016	chr10:71724016:G:A	rs72817951	G	A	G	Sox3.mouse_HMG_3	16	1	+	-0.04040213272997417	-0.07634258918249981	GCTGGGTGGCATTCAAG
chr10	71726666	71726667	chr10:71726667:G:A	rs7918082	G	A	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr10	71730228	71730229	chr10:71730229:A:G	rs16929272	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr10	71746739	71746740	chr10:71746740:A:G	rs78762605	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.653008730012996	-4.835826192057867	CGTGAATTGCAGCCAAC
chr10	71746756	71746757	chr10:71746757:C:A	rs12248205	C	A	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr10	71755904	71755905	chr10:71755905:T:C	rs6480552	T	C	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr10	71755920	71755921	chr10:71755921:T:C	rs10999984	T	C	T	Sox3.mouse_HMG_3	1	1	-	4.418149054200862	1.3180191177635705	CATTAATTACATTCACA
chr10	71771311	71771312	chr10:71771312:A:G	rs10762477	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr10	71974234	71974235	chr10:71974235:T:C	rs77455139	T	C	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr10	72027843	72027844	chr10:72027844:A:G	rs1245524	A	G	G	Sox3.mouse_HMG_3	1	1	+	1.92210276215452	-1.1780271742827733	TATAAAATGCAGTCAAG
chr10	72039114	72039115	chr10:72039115:C:T	rs1271351	C	T	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr10	72051154	72051155	chr10:72051155:C:T	rs11000155	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	72051155	72051156	chr10:72051156:G:C	rs1245577	G	C	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr10	72057540	72057541	chr10:72057541:C:T	rs1678622	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr10	72239525	72239526	chr10:72239526:C:T	rs7921206	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr10	72275957	72275958	chr10:72275958:T:C	rs11192	T	C	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr10	72553069	72553070	chr10:72553070:T:C	rs577028483	T	C	T	Sox3.mouse_HMG_3	6	1	-	4.7081060185471335	4.7081060185471335	TGTGAAATCTATTCAGA
chr10	72553072	72553073	chr10:72553073:C:T	rs79554558	C	T	C	Sox3.mouse_HMG_3	3	1	-	4.7081060185471335	-1.0734588689820985	TGTGAAATCTATTCAGA
chr10	72557431	72557432	chr10:72557432:T:C	rs1004709456	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr10	72638940	72638941	chr10:72638941:T:C	rs3009516	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr10	72953949	72953950	chr10:72953950:C:T	rs7094665	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr10	73496665	73496666	chr10:73496666:C:A	rs7099640	C	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr10	73496677	73496678	chr10:73496678:C:T	rs7099753	C	T	T	Sox3.mouse_HMG_3	11	1	+	2.856620421231912	8.941231247333857	GGTGACTGACACTCATG
chr10	73790157	73790158	chr10:73790158:C:A	rs2292307	C	A	C	Sox3.mouse_HMG_3	8	1	-	0.16946991817342238	-0.5354324954206154	GATGACAGGCAGTCAGT
chr10	74017385	74017386	chr10:74017386:G:A	rs11000849	G	A	-	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr10	74206607	74206608	chr10:74206608:A:G	rs6480723	A	G	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr10	74250124	74250125	chr10:74250125:G:T	rs7092245	G	T	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr10	74255557	74255558	chr10:74255558:G:C	rs12360119	G	C	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr10	74381044	74381045	chr10:74381045:T:A	rs10824166	T	A	A	Sox3.mouse_HMG_3	1	1	-	1.6741357927585439	-1.2959410154305506	CATGAAATTCATGCATT
chr10	74382758	74382759	chr10:74382759:G:A	rs10509348	G	A	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr10	74587900	74587901	chr10:74587901:C:A	rs150469491	C	A	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr10	74958116	74958117	chr10:74958117:T:A	rs11001222	T	A	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr10	75049697	75049698	chr10:75049698:C:T	rs79714953	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr10	75473495	75473496	chr10:75473496:C:T	rs77875212	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	75495596	75495597	chr10:75495597:C:T	rs10762669	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr10	75636756	75636757	chr10:75636757:T:G	rs10437387	T	G	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr10	76049901	76049902	chr10:76049902:C:A	rs1898068	C	A	A	Sox3.mouse_HMG_3	8	1	+	4.986341369253689	4.806007390753808	AATGAATGCTATTTCTA
chr10	76118191	76118192	chr10:76118192:T:C	rs12771083	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.3796967175315125	-5.22618240069942	TGTGAATGATGTACATT
chr10	76118220	76118221	chr10:76118221:C:A	chr10:76118221:C:A	C	A	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr10	76208678	76208679	chr10:76208679:T:C	rs2117795	T	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr10	76320091	76320092	chr10:76320092:T:C	rs2758962	T	C	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	76558813	76558814	chr10:76558814:T:A	rs1907301	T	A	T	Sox3.mouse_HMG_3	1	1	-	2.945816320801855	-0.024260487387239182	AATACATGTCATTCAAG
chr10	76618841	76618842	chr10:76618842:T:C	rs78070631	T	C	t	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr10	76640949	76640950	chr10:76640950:T:G	rs12416389	T	G	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr10	77258682	77258683	chr10:77258683:C:T	rs513489	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr10	77326135	77326136	chr10:77326136:C:T	rs16934600	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr10	77455668	77455669	chr10:77455669:T:C	rs166991	T	C	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr10	77478136	77478137	chr10:77478137:G:A	rs582273	G	A	A	Sox3.mouse_HMG_3	11	1	+	2.1525480386285967	-2.4976266871775414	TATGAATTCTTGCCATT
chr10	77687877	77687878	chr10:77687878:G:A	rs142756415	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr10	77840089	77840090	chr10:77840090:A:G	rs1248669	A	G	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr10	77858221	77858222	chr10:77858222:A:G	rs1781816	A	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr10	77892395	77892396	chr10:77892396:T:C	rs1262002	T	C	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr10	78256612	78256613	chr10:78256613:T:C	rs994150393	T	C	T	Sox3.mouse_HMG_3	12	1	+	1.1134501847337845	-5.079403382666983	GCTGATTGACTTTCATG
chr10	78315417	78315418	chr10:78315418:C:T	rs79539223	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr10	78337010	78337011	chr10:78337011:C:T	rs56386083	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr10	78357299	78357300	chr10:78357300:G:C	rs11002520	G	C	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr10	78394292	78394293	chr10:78394293:C:T	rs72808295	C	T	C	Sox3.mouse_HMG_3	11	1	-	3.411669132615482	-1.2385055931906555	GATGAAGTCCAGTCTTG
chr10	78459089	78459090	chr10:78459090:A:G	rs12356345	A	G	A	Sox3.mouse_HMG_3	1	1	-	2.396357679444734	1.1895749737779338	GTAGAATTGTAGTCACT
chr10	78459108	78459109	chr10:78459109:A:G	rs141174864	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr10	78472495	78472496	chr10:78472496:A:G	rs4979819	A	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr10	78472537	78472538	chr10:78472538:G:A	rs4979820	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr10	78717194	78717195	chr10:78717195:A:G	rs147963473	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.9832229377582742	-4.624727703782523	AATAAATTGCATGCAAT
chr10	78777619	78777620	chr10:78777620:A:T	rs139250896	A	T	A	Sox3.mouse_HMG_3	1	1	+	8.733907812389461	5.763831004200364	CATGAATGGCAGCCATT
chr10	78777647	78777648	chr10:78777648:T:C	rs34230536	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr10	79099997	79099998	chr10:79099998:A:G	rs56038371	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr10	79142022	79142023	chr10:79142023:C:T	rs118114823	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr10	79202782	79202783	chr10:79202783:C:T	rs192804533	C	T	C	Sox3.mouse_HMG_3	2	1	+	4.343659213537743	10.949538331768675	CACGAATGTTATTCACT
chr10	79240111	79240112	chr10:79240112:T:C	rs1749849	T	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr10	79305613	79305614	chr10:79305614:C:G	rs113334887	C	G	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	79317900	79317901	chr10:79317901:G:A	rs372536263	G	A	G	Sox3.mouse_HMG_3	9	1	-	6.297264001449641	6.304900678441387	AGTCAATGGCATTCAAA
chr10	79400393	79400394	chr10:79400394:C:T	rs4980073	C	T	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr10	79412928	79412929	chr10:79412929:A:C	rs11002965	A	C	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr10	79437420	79437421	chr10:79437421:T:G	rs4980083	T	G	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr10	79824454	79824455	chr10:79824455:C:T	rs7921922	C	T	-	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr10	79920192	79920193	chr10:79920193:G:A	rs45558131	G	A	g	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr10	79928845	79928846	chr10:79928846:T:G	rs2819104	T	G	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr10	79928847	79928848	chr10:79928848:G:C	rs2758557	G	C	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr10	79928865	79928866	chr10:79928866:C:T	rs2819103	C	T	C	Sox3.mouse_HMG_3	2	1	-	0.26245930766921566	1.2841105552011964	GTGGGATTACAGTCATG
chr10	79929263	79929264	chr10:79929264:C:T	rs190993942	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	80037216	80037217	chr10:80037217:G:C	rs116087422	G	C	-	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr10	80208380	80208381	chr10:80208381:T:C	chr10:80208381:T:C	T	C	t	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr10	80264459	80264460	chr10:80264460:C:T	rs73299582	C	T	.	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr10	80491757	80491758	chr10:80491758:T:C	rs17680741	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.5819841231478504	-5.023894995083081	GTTGAAAGTTAATCATT
chr10	80491787	80491788	chr10:80491788:C:A	rs7922621	C	A	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr10	80555533	80555534	chr10:80555534:T:C	rs11186029	T	C	T	Sox3.mouse_HMG_3	0	1	+	10.430584895232558	8.975714249895693	TTTGAATTCCATTCAGT
chr10	80597938	80597939	chr10:80597939:G:T	rs34515119	G	T	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr10	80662668	80662669	chr10:80662669:A:G	rs61859389	A	G	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr10	80757442	80757443	chr10:80757443:C:T	rs983807	C	T	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr10	80855628	80855629	chr10:80855629:C:A	rs68121878	C	A	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr10	81056152	81056153	chr10:81056153:G:A	rs11188201	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr10	81219309	81219310	chr10:81219310:G:A	rs7908787	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr10	81797414	81797415	chr10:81797415:C:G	rs10883734	C	G	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr10	81817793	81817794	chr10:81817794:C:T	rs78843744	C	T	C	Sox3.mouse_HMG_3	15	1	-	2.5568970432455282	3.4156783901019487	TATTAATGGCATGCAGA
chr10	81817802	81817803	chr10:81817803:A:T	rs186485494	A	T	A	Sox3.mouse_HMG_3	15	1	-	6.020047003101492	3.7562375388646716	TATGAACGGTATTAATG
chr10	82037011	82037012	chr10:82037012:C:T	rs11192241	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr10	82217825	82217826	chr10:82217826:A:G	rs2913106	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr10	82652049	82652050	chr10:82652050:A:G	rs601285	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr10	82741839	82741840	chr10:82741840:C:G	rs17100658	C	G	C	Sox3.mouse_HMG_3	15	1	-	1.6888310806031903	0.09702847998136355	ATTGAGTTTCAGTCAGT
chr10	82818087	82818088	chr10:82818088:G:A	rs118127986	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr10	83273300	83273301	chr10:83273301:C:T	rs10886057	C	T	T	Sox3.mouse_HMG_3	2	1	-	3.987823718727287	5.009474966259268	AAGGAATTCCATGCATA
chr10	83469832	83469833	chr10:83469833:C:T	rs10749309	C	T	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr10	83543891	83543892	chr10:83543892:G:C	rs116855065	G	C	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr10	83953308	83953309	chr10:83953309:G:A	rs10887189	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr10	84039770	84039771	chr10:84039771:C:T	rs2350147	C	T	T	Sox3.mouse_HMG_3	9	1	+	0.7804063868701367	0.7880430638618827	AATGTTTTCCATTCAGA
chr10	84456470	84456471	chr10:84456471:A:G	rs10887298	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr10	84826810	84826811	chr10:84826811:T:A	rs112488972	T	A	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr10	84927844	84927845	chr10:84927845:G:T	rs56882813	G	T	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	84943565	84943566	chr10:84943566:C:T	rs10128531	C	T	C	Sox3.mouse_HMG_3	1	1	-	3.5483296057416487	6.648459542178942	AGTGAATGGAAGTCAGT
chr10	84990996	84990997	chr10:84990997:C:T	rs1933954	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr10	85300370	85300371	chr10:85300371:C:G	rs145134539	C	G	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr10	85593042	85593043	chr10:85593043:G:A	rs2664397	G	A	A	Sox3.mouse_HMG_3	8	1	+	0.7371593330136403	0.114042685835827	GATGAATGGCCTTGAGC
chr10	85741955	85741956	chr10:85741956:C:A	rs75513267	C	A	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr10	85792428	85792429	chr10:85792429:T:C	rs78085924	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr10	86047774	86047775	chr10:86047775:G:A	rs75624291	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr10	86279123	86279124	chr10:86279124:C:A	rs7895744	C	A	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	86302516	86302517	chr10:86302517:A:G	rs2607842	A	G	G	Sox3.mouse_HMG_3	10	1	+	0.9532362426364918	-5.654714398904305	CATGAATCGCAGTGAAA
chr10	86308854	86308855	chr10:86308855:A:T	rs116260881	A	T	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr10	86694033	86694034	chr10:86694034:G:C	rs113953853	G	C	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr10	86753160	86753161	chr10:86753161:C:T	rs58334200	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr10	86756104	86756105	chr10:86756105:G:T	rs145691881	G	T	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr10	87394235	87394236	chr10:87394236:T:C	rs4550144	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr10	87394238	87394239	chr10:87394239:T:C	rs139869896	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr10	87564575	87564576	chr10:87564576:G:C	rs146484871	G	C	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr10	87564598	87564599	chr10:87564599:C:A	rs11202448	C	A	C	Sox3.mouse_HMG_3	7	1	-	0.184336518394	-0.6656964238360723	TCTGAATGCCAGTAGTG
chr10	87705233	87705234	chr10:87705234:A:G	rs4933458	A	G	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	87744585	87744586	chr10:87744586:T:C	rs7902841	T	C	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr10	87744586	87744587	chr10:87744587:G:A	rs7913763	G	A	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	87744634	87744635	chr10:87744635:A:G	rs11202536	A	G	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr10	87769655	87769656	chr10:87769656:T:C	rs111314760	T	C	T	Sox3.mouse_HMG_3	9	1	+	3.943878698743747	3.936242021752001	AATAAATATTAGTCATA
chr10	87772011	87772012	chr10:87772012:C:T	rs184728331	C	T	T	Sox3.mouse_HMG_3	1	1	+	10.52406762215438	11.73085032782118	ACTGAATGACATTCAGG
chr10	88344947	88344948	chr10:88344948:A:G	rs11202727	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	88592781	88592782	chr10:88592782:C:T	rs10509552	C	T	C	Sox3.mouse_HMG_3	11	1	-	3.972606224526178	-0.6775685012799586	TATGAATACTAGTTATG
chr10	88759634	88759635	chr10:88759635:G:A	rs303461	G	A	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr10	88832349	88832350	chr10:88832350:G:A	rs1214550	G	A	G	Sox3.mouse_HMG_3	14	1	-	1.7199596834409963	1.7199596834409963	AATGAATGCTTTTCCGA
chr10	88869971	88869972	chr10:88869972:C:T	rs7076970	C	T	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr10	88937111	88937112	chr10:88937112:G:C	rs1441735	G	C	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr10	88971511	88971512	chr10:88971512:T:A	rs17447091	T	A	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr10	89003369	89003370	chr10:89003370:C:T	rs2296603	C	T	c	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr10	89334428	89334429	chr10:89334429:A:C	rs7916398	A	C	.	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr10	89342731	89342732	chr10:89342732:T:C	rs1332333	T	C	C	Sox3.mouse_HMG_3	5	1	-	1.2375156514616596	-5.251319270609204	AATGAATGTGAGTGAGG
chr10	89517855	89517856	chr10:89517856:C:G	rs7903979	C	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr10	89612086	89612087	chr10:89612087:C:T	rs3802655	C	T	C	Sox3.mouse_HMG_3	13	1	+	1.8968919771367736	-4.710368633325246	GCTGAATGCTATGCGTG
chr10	89625798	89625799	chr10:89625799:T:C	rs17124950	T	C	T	Sox3.mouse_HMG_3	2	1	+	3.5367926229918227	-3.069086495239108	CATGAAGTGTATTCTTA
chr10	89628841	89628842	chr10:89628842:C:G	rs10159610	C	G	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr10	89857625	89857626	chr10:89857626:A:G	rs1924715	A	G	A	Sox3.mouse_HMG_3	11	1	-	1.6504921916486401	-4.434118634453307	TCAGAATGTTTTTCATG
chr10	89862186	89862187	chr10:89862187:G:A	chr10:89862187:G:A	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr10	89873235	89873236	chr10:89873236:G:A	rs11185910	G	A	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr10	89873238	89873239	chr10:89873239:G:A	rs11185911	G	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr10	90047036	90047037	chr10:90047037:G:C	rs34606109	G	C	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr10	90126244	90126245	chr10:90126245:T:A	rs138572431	T	A	T	Sox3.mouse_HMG_3	6	1	+	0.9093562245287852	-5.841695260652686	CATTCATTTTAGTCATG
chr10	90175096	90175097	chr10:90175097:A:G	rs7100222	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr10	90195446	90195447	chr10:90195447:T:C	rs10732772	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr10	90398990	90398991	chr10:90398991:A:G	rs11186158	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr10	90400695	90400696	chr10:90400696:A:G	rs12358059	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr10	90407747	90407748	chr10:90407748:T:C	rs1341827	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	90417192	90417193	chr10:90417193:A:G	rs114197613	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	90417232	90417233	chr10:90417233:G:A	rs1341820	G	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr10	90451601	90451602	chr10:90451602:A:G	rs137981854	A	G	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr10	90751746	90751747	chr10:90751747:G:C	rs11186298	G	C	G	Sox3.mouse_HMG_3	8	1	-	6.794541147664908	7.2373238163428395	TGTGAATTCCAGGCATG
chr10	90816632	90816633	chr10:90816633:T:C	rs11813096	T	C	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr10	90854644	90854645	chr10:90854645:G:A	rs11186338	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	90969296	90969297	chr10:90969297:G:A	rs4933633	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr10	91000026	91000027	chr10:91000027:A:G	rs61857871	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr10	91077005	91077006	chr10:91077006:G:A	rs3852502	G	A	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr10	91091286	91091287	chr10:91091287:C:T	rs116377739	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr10	91512224	91512225	chr10:91512225:T:A	rs12245101	T	A	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	91565354	91565355	chr10:91565355:A:C	rs1411120	A	C	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr10	91587539	91587540	chr10:91587540:C:A	rs2149825	C	A	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr10	91614484	91614485	chr10:91614485:G:C	rs12354606	G	C	G	Sox3.mouse_HMG_3	11	1	+	2.1800467778553703	-2.470127947950769	AATGAACTACTGTCATG
chr10	91653061	91653062	chr10:91653062:G:T	rs11186644	G	T	G	Sox3.mouse_HMG_3	8	1	+	1.4949392800962	0.7900368665021622	AGTAAATGGTAGTTATA
chr10	92267435	92267436	chr10:92267436:A:G	rs9804247	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr10	92723725	92723726	chr10:92723726:T:C	rs2488079	T	C	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr10	92742776	92742777	chr10:92742777:G:A	rs118103533	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr10	92756710	92756711	chr10:92756711:G:A	rs12784232	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr10	92837257	92837258	chr10:92837258:C:T	rs111586433	C	T	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	92873320	92873321	chr10:92873321:T:G	rs11815289	T	G	T	Sox3.mouse_HMG_3	3	1	+	3.5385875127934594	10.445081997308172	TATTAATGTCAGTAATA
chr10	93314084	93314085	chr10:93314085:A:T	rs77671074	A	T	A	Sox3.mouse_HMG_3	1	1	+	0.012103417847401432	-2.9579733903416927	GATGTAAGGCATTCACT
chr10	93476197	93476198	chr10:93476198:C:T	rs11187447	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr10	93874443	93874444	chr10:93874444:T:C	rs2042614	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr10	94036507	94036508	chr10:94036508:C:A	rs7910822	C	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr10	94292831	94292832	chr10:94292832:T:G	rs117714467	T	G	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	94362830	94362831	chr10:94362831:G:A	rs374022270	G	A	g	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr10	94362856	94362857	chr10:94362857:T:C	rs760157979	T	C	t	Sox3.mouse_HMG_3	6	1	+	0.6100803488202591	-5.997870292720537	AATGAATGCCGGCCAGA
chr10	94397764	94397765	chr10:94397765:C:T	rs77663909	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr10	94402242	94402243	chr10:94402243:T:C	rs552772114	T	C	T	Sox3.mouse_HMG_3	5	1	-	4.502281864662832	-1.986553057408031	GATGTATTTCATTTATG
chr10	94402246	94402247	chr10:94402247:T:G	rs187727356	T	G	T	Sox3.mouse_HMG_3	1	1	-	4.502281864662832	0.32542235080693915	GATGTATTTCATTTATG
chr10	95122744	95122745	chr10:95122745:A:G	rs7921561	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.3768477763950833	-5.231102865145714	AAACAATGGCAGTCAGA
chr10	95511506	95511507	chr10:95511507:G:A	rs12570449	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	95525209	95525210	chr10:95525210:G:A	rs61869976	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	95542073	95542074	chr10:95542074:C:T	rs12416299	C	T	T	Sox3.mouse_HMG_3	0	1	-	1.4731474461593466	0.6478635450130026	GATGAATGCCAGGCTGA
chr10	95573476	95573477	chr10:95573477:T:C	rs7912555	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr10	96129213	96129214	chr10:96129214:T:G	rs3789925	T	G	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr10	96351884	96351885	chr10:96351885:T:C	rs149960854	T	C	T	Sox3.mouse_HMG_3	10	1	-	2.1526723881957794	-4.455278253345018	CATGTAATGCATTCATT
chr10	96643261	96643262	chr10:96643262:G:A	rs80314712	G	A	G	Sox3.mouse_HMG_3	4	1	-	1.4339045426165893	1.5770053862572626	CATGCATTTTAGTCGTG
chr10	97292761	97292762	chr10:97292762:A:C	rs77530280	A	C	.	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr10	97378240	97378241	chr10:97378241:G:C	rs10882909	G	C	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr10	97574656	97574657	chr10:97574657:T:G	rs11189283	T	G	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr10	97593518	97593519	chr10:97593519:A:G	rs61863285	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	97659777	97659778	chr10:97659778:A:G	rs77962804	A	G	.	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr10	97675871	97675872	chr10:97675872:A:G	rs1046237	A	G	G	Sox3.mouse_HMG_3	4	1	+	2.2526923795992166	-4.130124348394852	TCTGAGTGGCACTCATG
chr10	98159218	98159219	chr10:98159219:A:G	rs4468282	A	G	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr10	98344953	98344954	chr10:98344954:G:A	rs12254198	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr10	98391431	98391432	chr10:98391432:T:C	rs10883084	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr10	98406449	98406450	chr10:98406450:T:G	rs74154414	T	G	T	Sox3.mouse_HMG_3	10	1	-	0.48580759754013125	-6.265243887641339	GATGAAATCTAGCCAGG
chr10	98422814	98422815	chr10:98422815:C:T	rs74154467	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr10	98427201	98427202	chr10:98427202:A:G	rs12571249	A	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr10	98457059	98457060	chr10:98457060:C:T	rs4598598	C	T	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr10	98460714	98460715	chr10:98460715:T:C	rs1925645	T	C	C	Sox3.mouse_HMG_3	1	1	-	0.9866268943790124	-2.1135030420582797	GATGAATTGTGATCACA
chr10	98460730	98460731	chr10:98460731:C:T	rs1925644	C	T	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	98619421	98619422	chr10:98619422:A:T	rs10748747	A	T	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr10	98779862	98779863	chr10:98779863:A:C	rs714391	A	C	t	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr10	98905531	98905532	chr10:98905532:G:T	rs4919264	G	T	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr10	98950366	98950367	chr10:98950367:T:C	rs947539	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	98968034	98968035	chr10:98968035:T:C	rs114534814	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr10	99174261	99174262	chr10:99174262:C:G	rs10883287	C	G	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr10	99276544	99276545	chr10:99276545:G:A	rs6584250	G	A	G	Sox3.mouse_HMG_3	3	1	+	4.288404544066305	-1.493160343462926	TACGAATTATATTTATA
chr10	99394538	99394539	chr10:99394539:A:T	rs2862610	A	T	A	Sox3.mouse_HMG_3	4	1	+	0.9738383551656926	-5.63360230931302	AGTGAATGCCAGAAATG
chr10	99692454	99692455	chr10:99692455:C:T	rs2078260	C	T	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr10	99843764	99843765	chr10:99843765:T:C	rs17216177	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr10	100080361	100080362	chr10:100080362:T:A	rs11596211	T	A	T	Sox3.mouse_HMG_3	6	1	+	4.50137025275751	-2.2496812324239617	CATGGATGCTATCCATA
chr10	100085789	100085790	chr10:100085790:C:T	rs34236122	C	T	T	Sox3.mouse_HMG_3	0	1	-	3.050674581598894	2.225390680452549	GGAGAATGGGATTCATC
chr10	100085790	100085791	chr10:100085791:G:A	rs11190387	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr10	100116978	100116979	chr10:100116979:C:G	rs2862991	C	G	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr10	100186538	100186539	chr10:100186539:G:A	rs755163698	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr10	100873793	100873794	chr10:100873794:C:T	rs11190733	C	T	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr10	100873799	100873800	chr10:100873800:G:A	rs185066563	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr10	101304549	101304550	chr10:101304550:C:T	rs900796258	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr10	101974282	101974283	chr10:101974283:A:G	rs6584466	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr10	102534594	102534595	chr10:102534595:A:C	rs75438232	A	C	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr10	102666419	102666420	chr10:102666420:G:A	rs4244354	G	A	G	Sox3.mouse_HMG_3	1	1	+	1.7922824718188122	4.892412408256105	CGTGAATGTGAGTCAGC
chr10	102773564	102773565	chr10:102773565:C:T	rs553258	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr10	102836070	102836071	chr10:102836071:G:A	rs284847	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr10	103145846	103145847	chr10:103145847:T:C	rs7897663	T	C	T	Sox3.mouse_HMG_3	15	1	-	2.3269421391829512	1.4681607923265305	GATGGAGTTTATTCAAG
chr10	103500768	103500769	chr10:103500769:T:C	rs79268645	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr10	103500776	103500777	chr10:103500777:A:G	rs10748843	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr10	103513394	103513395	chr10:103513395:T:C	rs58843488	T	C	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr10	103740761	103740762	chr10:103740762:T:C	rs879544	T	C	C	Sox3.mouse_HMG_3	16	1	-	3.1569878656242736	3.192928322076799	AATGAATGGCGTTCCAA
chr10	103759170	103759171	chr10:103759171:C:T	rs142075463	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr10	103759171	103759172	chr10:103759172:G:A	rs146664123	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr10	103775288	103775289	chr10:103775289:T:C	rs11191803	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	103872872	103872873	chr10:103872873:A:T	rs79453661	A	T	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr10	103968521	103968522	chr10:103968522:G:A	rs7097109	G	A	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr10	104300071	104300072	chr10:104300072:C:T	rs968619637	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr10	104304656	104304657	chr10:104304657:T:C	rs11191994	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr10	104326636	104326637	chr10:104326637:T:C	rs11192007	T	C	T	Sox3.mouse_HMG_3	2	1	+	0.23874959743779534	-6.367129520793137	GTTGAATGGCAGCCCTC
chr10	104542347	104542348	chr10:104542348:A:G	rs74157130	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr10	104612810	104612811	chr10:104612811:A:G	rs151285204	A	G	a	Sox3.mouse_HMG_3	2	1	-	3.3757286761629564	-3.2301504420679743	GATGAAGTCCAGTCTTA
chr10	104872964	104872965	chr10:104872965:C:T	rs11192215	C	T	C	Sox3.mouse_HMG_3	9	1	+	3.1051545594514502	3.112791236443196	TATGGTTTACAGTCATG
chr10	104908914	104908915	chr10:104908915:C:G	rs117856040	C	G	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr10	105150312	105150313	chr10:105150313:C:G	rs1377014	C	G	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr10	105150609	105150610	chr10:105150610:G:A	rs138769273	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr10	105803521	105803522	chr10:105803522:C:T	rs7900629	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr10	105982906	105982907	chr10:105982907:T:C	rs1361961831	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.0964070392217282	-5.5094720790092	TATGAATTGCTGTTAAG
chr10	106179742	106179743	chr10:106179743:G:A	rs4568932	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr10	106189150	106189151	chr10:106189151:G:A	rs10884268	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr10	106226115	106226116	chr10:106226116:C:T	rs9919497	C	T	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr10	106255115	106255116	chr10:106255116:C:T	rs4918218	C	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr10	106255541	106255542	chr10:106255542:C:A	rs10786931	C	A	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr10	106290441	106290442	chr10:106290442:T:C	rs10884293	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr10	106365814	106365815	chr10:106365815:G:T	rs11592677	G	T	G	Sox3.mouse_HMG_3	10	1	-	1.9889682545493783	8.740019739730851	GATAAATGGCCTTCACA
chr10	106402474	106402475	chr10:106402475:T:G	chr10:106402475:T:G	T	G	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr10	106402497	106402498	chr10:106402498:A:G	rs79705277	A	G	A	Sox3.mouse_HMG_3	14	1	+	5.616891743585734	-0.7650544228411762	TATGCATGGTATTTATA
chr10	106502454	106502455	chr10:106502455:T:G	rs17177040	T	G	T	Sox3.mouse_HMG_3	10	1	-	2.0278677982198356	-4.723183686961635	ATTAAATTCTATTCGTG
chr10	106720500	106720501	chr10:106720501:C:T	rs6584761	C	T	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr10	106732427	106732428	chr10:106732428:G:A	rs556602966	G	A	G	Sox3.mouse_HMG_3	13	1	-	2.274271122859555	-4.332989487602465	CATGACTTGCAGTCTTG
chr10	106774684	106774685	chr10:106774685:A:G	rs12248264	A	G	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr10	106797642	106797643	chr10:106797643:C:T	rs821995	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr10	106895285	106895286	chr10:106895286:T:C	rs74152265	T	C	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr10	107133806	107133807	chr10:107133807:T:C	rs864262	T	C	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr10	107215399	107215400	chr10:107215400:C:T	rs9888087	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr10	107441934	107441935	chr10:107441935:T:C	rs1903907	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr10	107555014	107555015	chr10:107555015:G:A	rs35318777	G	A	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr10	108151483	108151484	chr10:108151484:C:T	rs418692	C	T	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr10	108849532	108849533	chr10:108849533:G:C	rs117492497	G	C	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr10	108914008	108914009	chr10:108914009:A:C	chr10:108914009:A:C	A	C	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr10	109267367	109267368	chr10:109267368:G:C	rs10884731	G	C	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr10	109701569	109701570	chr10:109701570:T:C	rs10787191	T	C	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr10	110059785	110059786	chr10:110059786:A:G	rs35333119	A	G	A	Sox3.mouse_HMG_3	16	1	-	3.842276059593341	2.975349320121062	TATGAATGATCTTTATT
chr10	110233938	110233939	chr10:110233939:G:C	rs2050996	G	C	G	Sox3.mouse_HMG_3	16	1	+	-0.46833976664272803	-2.5221960223200286	GATGAAAGGCATTTTTG
chr10	110455803	110455804	chr10:110455804:A:T	rs735324	A	T	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr10	110462639	110462640	chr10:110462640:C:T	rs11195143	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	110500386	110500387	chr10:110500387:G:T	rs74158105	G	T	G	Sox3.mouse_HMG_3	3	1	+	2.779644330016616	-4.126850154498099	CAAGAATTACATGCATT
chr10	110637289	110637290	chr10:110637290:C:T	rs950953973	C	T	c	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr10	110637290	110637291	chr10:110637291:G:A	rs78140292	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr10	110679877	110679878	chr10:110679878:A:G	rs10749044	A	G	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr10	110746105	110746106	chr10:110746106:G:C	rs2000115	G	C	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr10	110746117	110746118	chr10:110746118:G:A	rs2000114	G	A	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr10	110802280	110802281	chr10:110802281:T:C	rs17128003	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr10	110898389	110898390	chr10:110898390:G:A	rs61469604	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr10	111158976	111158977	chr10:111158977:T:C	rs7898849	T	C	C	Sox3.mouse_HMG_3	7	1	+	1.9083291396676285	-3.49508204030969	TATGAAATCCCTTCAAA
chr10	111394544	111394545	chr10:111394545:C:A	rs10885157	C	A	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr10	111557042	111557043	chr10:111557043:T:C	rs12098748	T	C	T	Sox3.mouse_HMG_3	1	1	-	4.732326853000109	1.6321969165628183	TATGACTGGCAGCCATA
chr10	111598705	111598706	chr10:111598706:T:C	rs182566829	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr10	111599981	111599982	chr10:111599982:C:T	rs1414889	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr10	112072190	112072191	chr10:112072191:A:C	rs2792694	A	C	A	Sox3.mouse_HMG_3	9	1	-	3.205849489300256	-2.1417161950660537	AATTAATTTTTTTCATA
chr10	112169740	112169741	chr10:112169741:C:G	rs2251697	C	G	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr10	112266102	112266103	chr10:112266103:T:G	rs17129672	T	G	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr10	112272135	112272136	chr10:112272136:C:T	rs1382063404	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr10	112663998	112663999	chr10:112663999:T:C	rs7082408	T	C	C	Sox3.mouse_HMG_3	8	1	-	1.3658516073715652	1.9889682545493783	GATAAAAGACATTCACA
chr10	112706112	112706113	chr10:112706113:A:G	rs7897837	A	G	A	Sox3.mouse_HMG_3	15	1	-	7.47692445007319	2.7625310383581216	CATGATTTGTAGTCATT
chr10	113329080	113329081	chr10:113329081:G:C	rs73364281	G	C	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr10	113412298	113412299	chr10:113412299:A:G	rs117599260	A	G	A	Sox3.mouse_HMG_3	10	1	+	1.1304270472572948	-5.477523594283502	GGAGATTGCCATTCAAG
chr10	113649309	113649310	chr10:113649310:A:T	rs2900988	A	T	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr10	113816842	113816843	chr10:113816843:A:G	rs12245064	A	G	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr10	114022506	114022507	chr10:114022507:C:T	rs115384982	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr10	114354262	114354263	chr10:114354263:T:C	rs7922542	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr10	114356099	114356100	chr10:114356100:C:T	rs4144103	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr10	114442569	114442570	chr10:114442570:A:G	rs1885334	A	G	A	Sox3.mouse_HMG_3	4	1	+	0.9153575691936238	-5.467459158800444	GATCAATGCCAGTGAGG
chr10	114516805	114516806	chr10:114516806:C:T	rs77507038	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr10	114545617	114545618	chr10:114545618:C:T	rs2483599	C	T	C	Sox3.mouse_HMG_3	3	1	-	3.6303036888008178	-2.1512611987284136	TATGTATTATATACATT
chr10	114571508	114571509	chr10:114571509:G:A	rs77941690	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr10	114691307	114691308	chr10:114691308:C:T	rs11196881	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr10	115062885	115062886	chr10:115062886:A:G	rs7086914	A	G	A	Sox3.mouse_HMG_3	2	1	-	4.2616528590038465	-2.344226259227085	AATGAATTCTTTACATA
chr10	115956857	115956858	chr10:115956858:G:A	rs7922087	G	A	A	Sox3.mouse_HMG_3	13	1	+	3.344935625295082	3.5695595617797258	TATGAAAGGCATTGAAA
chr10	116102231	116102232	chr10:116102232:G:T	rs2694782	G	T	T	Sox3.mouse_HMG_3	3	1	+	3.9076751762325297	-2.998819308282185	ATTGTATTACAGTCATC
chr10	116102247	116102248	chr10:116102248:G:A	rs3781517	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr10	116208817	116208818	chr10:116208818:A:G	rs2694767	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr10	116240333	116240334	chr10:116240334:T:A	rs4554795	T	A	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr10	116296654	116296655	chr10:116296655:C:T	rs35997739	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr10	116420034	116420035	chr10:116420035:G:A	rs78756028	G	A	A	Sox3.mouse_HMG_3	9	1	-	3.2539590856169895	3.2615957626087355	GTTAAATGACATTTATA
chr10	116725550	116725551	chr10:116725551:G:T	rs7906171	G	T	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr10	116926615	116926616	chr10:116926616:G:A	rs903978608	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.2028668138155802	-4.5786980737136505	TACGCATTCTATTCAGA
chr10	117405601	117405602	chr10:117405602:G:A	rs61866563	G	A	a	Sox3.mouse_HMG_3	7	1	+	1.139111263752311	-5.414437450905416	GATGAAGGCCAGTCTGG
chr10	117461671	117461672	chr10:117461672:T:C	rs4752061	T	C	C	Sox3.mouse_HMG_3	16	1	-	2.724671751271474	2.760612207724	GATGAATTTCGCTCAAA
chr10	117583972	117583973	chr10:117583973:T:G	rs703363	T	G	G	Sox3.mouse_HMG_3	5	1	-	2.2494670640588073	-4.357973600419903	ATTGGATGATATCCATA
chr10	117589084	117589085	chr10:117589085:T:C	rs181604	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr10	117823290	117823291	chr10:117823291:T:C	rs4752116	T	C	C	Sox3.mouse_HMG_3	5	1	-	1.7756064685104447	-4.713228453560421	AGTGAATTGTGATCATA
chr10	117933067	117933068	chr10:117933068:G:T	rs7073284	G	T	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr10	118416910	118416911	chr10:118416911:C:T	rs853956	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr10	118488065	118488066	chr10:118488066:C:A	rs75876539	C	A	A	Sox3.mouse_HMG_3	16	1	-	0.8423704343568243	-0.3445590818481975	TTTGAATGACTGTCTTG
chr10	118528778	118528779	chr10:118528779:T:G	rs76527683	T	G	T	Sox3.mouse_HMG_3	6	1	+	2.3835494706934846	-4.367502014487985	TATGGATTTCATTCTAA
chr10	118630109	118630110	chr10:118630110:T:G	rs2250172	T	G	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr10	118961650	118961651	chr10:118961651:T:A	rs10886350	T	A	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	118961667	118961668	chr10:118961668:C:T	rs80078739	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr10	118983475	118983476	chr10:118983476:C:T	rs72826530	C	T	c	Sox3.mouse_HMG_3	16	1	+	2.0400426648578533	2.906969404330132	GGTTAATTACAGTCAAC
chr10	119162562	119162563	chr10:119162563:T:C	rs35233430	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr10	119547809	119547810	chr10:119547810:A:G	rs3009928	A	G	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr10	119564463	119564464	chr10:119564464:A:G	rs4752331	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr10	120416042	120416043	chr10:120416043:A:T	rs2148476	A	T	A	Sox3.mouse_HMG_3	1	1	-	8.569773039942817	11.539849848131912	GTTGAATTTTAGTCACA
chr10	120452240	120452241	chr10:120452241:T:G	rs7085288	T	G	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr10	120538517	120538518	chr10:120538518:G:T	rs2420724	G	T	G	Sox3.mouse_HMG_3	3	1	+	1.1755875668092128	-5.730906917705501	GGAGAATGACATTCTAG
chr10	120750839	120750840	chr10:120750840:T:C	rs7097321	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr10	120850878	120850879	chr10:120850879:C:G	rs10886785	C	G	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr10	120850917	120850918	chr10:120850918:C:T	rs149036466	C	T	C	Sox3.mouse_HMG_3	9	1	-	4.914022749546555	4.1997331324128	AATGAATGAGATTAATT
chr10	120934051	120934052	chr10:120934052:T:C	rs1659592	T	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr10	121112230	121112231	chr10:121112231:A:T	rs17101435	A	T	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	121333734	121333735	chr10:121333735:G:A	rs116795894	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr10	121338734	121338735	chr10:121338735:C:T	rs7895870	C	T	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr10	121459915	121459916	chr10:121459916:C:T	rs2420938	C	T	C	Sox3.mouse_HMG_3	8	1	+	1.594768731398925	1.332648986482819	AGTGAATTCTAATCTTG
chr10	121528188	121528189	chr10:121528189:T:C	rs2981434	T	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr10	121528212	121528213	chr10:121528213:T:C	rs2981433	T	C	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr10	121644341	121644342	chr10:121644342:C:T	rs17102382	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr10	122010714	122010715	chr10:122010715:C:A	rs142742438	C	A	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr10	122120696	122120697	chr10:122120697:C:T	rs11200411	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr10	122151829	122151830	chr10:122151830:T:C	rs7078373	T	C	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr10	122189103	122189104	chr10:122189104:G:C	rs7897435	G	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr10	122232258	122232259	chr10:122232259:A:G	rs10788262	A	G	A	Sox3.mouse_HMG_3	10	1	+	6.9060064784310855	0.29805583689028603	AATGAATTGCATGCAGT
chr10	122236987	122236988	chr10:122236988:A:C	rs4752673	A	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr10	122275673	122275674	chr10:122275674:T:G	rs11817245	T	G	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr10	122421171	122421172	chr10:122421172:A:G	rs190404754	A	G	A	Sox3.mouse_HMG_3	4	1	+	1.6164550109085438	-4.766361717085525	AGTGAATGTCATTGGTA
chr10	122429596	122429597	chr10:122429597:G:A	rs72832716	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr10	122704523	122704524	chr10:122704524:C:T	rs117268291	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr10	122777070	122777071	chr10:122777071:C:G	rs869743	C	G	G	Sox3.mouse_HMG_3	6	1	-	2.00981734848825	2.1529181921289235	AATGAAGTTTACTCATC
chr10	122790581	122790582	chr10:122790582:G:A	rs72836196	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr10	123230342	123230343	chr10:123230343:G:A	rs113854227	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr10	123288094	123288095	chr10:123288095:T:C	rs182259489	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr10	123354499	123354500	chr10:123354500:G:C	rs1887822	G	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr10	123470669	123470670	chr10:123470670:T:C	rs705150	T	C	T	Sox3.mouse_HMG_3	8	1	+	4.945916395070723	5.208036139986829	ATTGAATGTTATTAAAT
chr10	123529329	123529330	chr10:123529330:A:G	rs2486033	A	G	A	Sox3.mouse_HMG_3	16	1	+	1.0083196688934035	1.0442601253459292	TGTGAATGCTGGGCATA
chr10	123573689	123573690	chr10:123573690:C:T	rs1767132	C	T	T	Sox3.mouse_HMG_3	9	1	+	2.477886881561048	2.485523558552795	ATTAAATTACAGTCAGT
chr10	123750125	123750126	chr10:123750126:T:C	rs2362676	T	C	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr10	124018394	124018395	chr10:124018395:T:C	rs9422270	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	124356737	124356738	chr10:124356738:C:T	rs76662059	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr10	124401860	124401861	chr10:124401861:A:G	rs17619406	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr10	124542831	124542832	chr10:124542832:C:T	rs6597834	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr10	124710207	124710208	chr10:124710208:C:A	rs74700267	C	A	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr10	124728611	124728612	chr10:124728612:C:A	rs17635335	C	A	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr10	124943984	124943985	chr10:124943985:G:A	rs77497062	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr10	124949866	124949867	chr10:124949867:A:G	rs75836769	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr10	125006503	125006504	chr10:125006504:T:C	rs76042663	T	C	T	Sox3.mouse_HMG_3	15	1	-	2.9429231013183124	2.084141754461892	CTTGAATTTCAGTCCAG
chr10	125060640	125060641	chr10:125060641:T:G	rs147839697	T	G	T	Sox3.mouse_HMG_3	0	1	+	0.9668386115939662	1.2357594653937192	TGTGCAGGGCAGTCATG
chr10	125093019	125093020	chr10:125093020:C:T	rs529536073	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr10	125114862	125114863	chr10:125114863:G:A	rs7912889	G	A	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr10	125145611	125145612	chr10:125145612:C:T	rs139121751	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr10	125471933	125471934	chr10:125471934:T:G	rs139445344	T	G	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr10	125487728	125487729	chr10:125487729:C:T	rs11595727	C	T	C	Sox3.mouse_HMG_3	8	1	+	2.726258057650761	2.4641383127346552	AATAAATGCTATGCAGG
chr10	125515597	125515598	chr10:125515598:G:T	rs9422893	G	T	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr10	125629797	125629798	chr10:125629798:C:A	rs172465	C	A	C	Sox3.mouse_HMG_3	0	1	-	4.322550533490857	4.053629679691102	GATGATTTTCTTTCATA
chr10	125692181	125692182	chr10:125692182:A:G	rs11244610	A	G	A	Sox3.mouse_HMG_3	9	1	-	1.7295794081723452	1.7219427311805975	AATGAATTCTCTGCAAA
chr10	125784089	125784090	chr10:125784090:T:C	rs73379251	T	C	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr10	125795664	125795665	chr10:125795665:A:G	rs2281957	A	G	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr10	125934523	125934524	chr10:125934524:G:C	rs557941867	G	C	g	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr10	125980814	125980815	chr10:125980815:G:T	rs11818112	G	T	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr10	126137703	126137704	chr10:126137704:C:T	rs78253196	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr10	126137711	126137712	chr10:126137712:A:G	rs11244828	A	G	A	Sox3.mouse_HMG_3	14	1	-	2.3928418981156554	2.3928418981156554	AAGGAATGACATTCTAA
chr10	126153862	126153863	chr10:126153863:C:T	rs4272714	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	126179813	126179814	chr10:126179814:T:C	rs10901552	T	C	C	Sox3.mouse_HMG_3	11	1	+	2.152701177612939	-3.9319096484890057	CATGCATGGCATGCAAG
chr10	126242366	126242367	chr10:126242367:T:A	chr10:126242367:T:A	T	A	T	Sox3.mouse_HMG_3	6	1	+	2.299572196052266	-4.451479289129204	ATAGAATTGTATTTATG
chr10	126244195	126244196	chr10:126244196:C:A	rs4962322	C	A	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr10	126511448	126511449	chr10:126511449:G:A	rs10751558	G	A	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr10	126543262	126543263	chr10:126543263:C:T	rs1370100	C	T	T	Sox3.mouse_HMG_3	15	1	-	1.1032594260601905	1.962040772916611	GATGACTGACAGGCAGG
chr10	126598061	126598062	chr10:126598062:A:G	rs2804424	A	G	C	Sox3.mouse_HMG_3	12	1	-	3.1731453337267714	-3.0197082336739953	GAGGAATGCCATTGAAA
chr10	126733581	126733582	chr10:126733582:A:C	rs11245119	A	C	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr10	126859741	126859742	chr10:126859742:G:T	rs6650151	G	T	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr10	126893873	126893874	chr10:126893874:G:A	rs139862924	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr10	126915173	126915174	chr10:126915174:T:A	rs10751589	T	A	T	Sox3.mouse_HMG_3	8	1	+	1.9083509666697995	1.9901367330860242	GAAGAATGTTAGTCTGG
chr10	126979257	126979258	chr10:126979258:C:T	rs71490797	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr10	127283473	127283474	chr10:127283474:A:G	rs4603213	A	G	A	Sox3.mouse_HMG_3	10	1	+	9.861297881695384	3.253347240154585	GATGCATTACATTCATT
chr10	127344906	127344907	chr10:127344907:T:C	rs943206	T	C	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr10	127393765	127393766	chr10:127393766:C:T	rs61176465	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr10	127549086	127549087	chr10:127549087:T:G	rs7894110	T	G	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr10	127937394	127937395	chr10:127937395:C:T	rs4750925	C	T	T	Sox3.mouse_HMG_3	1	1	-	1.775950532475629	4.876080468912922	TGTCAATTCCACTCATG
chr10	127991519	127991520	chr10:127991520:C:T	rs4531377	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr10	128087117	128087118	chr10:128087118:A:G	rs77099067	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr10	128090612	128090613	chr10:128090613:G:A	rs7075389	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr10	128212259	128212260	chr10:128212260:A:G	rs115729414	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr10	128306602	128306603	chr10:128306603:C:T	rs7914524	C	T	C	Sox3.mouse_HMG_3	3	1	-	1.9150261429411073	-3.8665387445881256	AGCGGATGCCATTCATG
chr10	128323502	128323503	chr10:128323503:A:C	rs61873914	A	C	A	Sox3.mouse_HMG_3	2	1	-	7.664848304898673	0.9158683430270693	GATGAATGCCAGTTAGG
chr10	128509557	128509558	chr10:128509558:A:G	rs1328466	A	G	A	Sox3.mouse_HMG_3	15	1	-	2.188868672216362	-2.525524739498706	TGTGAATTGTTATCATA
chr10	128533800	128533801	chr10:128533801:T:C	rs7094640	T	C	T	Sox3.mouse_HMG_3	0	1	-	8.433461152865252	9.258745054011595	ATTGAATGCTGTTCATG
chr10	128633052	128633053	chr10:128633053:G:A	rs11016397	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr10	128954627	128954628	chr10:128954628:C:T	rs7907483	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr10	129233508	129233509	chr10:129233509:T:C	rs114298592	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr10	129451805	129451806	chr10:129451806:G:C	rs11016797	G	C	G	Sox3.mouse_HMG_3	16	1	+	0.8077464494021644	-1.2461098062751363	ACTGGATGTTATTCCTG
chr10	129512697	129512698	chr10:129512698:G:C	rs7073801	G	C	C	Sox3.mouse_HMG_3	8	1	+	3.3335428279792723	2.8907601593013403	GTTGAATTGTAGTCTGT
chr10	129568909	129568910	chr10:129568910:T:G	rs509017	T	G	t	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr10	129581194	129581195	chr10:129581195:G:A	rs76346392	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr10	129893241	129893242	chr10:129893242:A:G	rs189655495	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr10	129946902	129946903	chr10:129946903:T:C	rs10829664	T	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr10	129946912	129946913	chr10:129946913:C:T	rs150599731	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr10	130046414	130046415	chr10:130046415:G:C	rs78349869	G	C	g	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr10	130053747	130053748	chr10:130053748:G:A	rs12357861	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr10	130080200	130080201	chr10:130080201:A:G	rs72843893	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr10	130080212	130080213	chr10:130080213:C:G	rs72843894	C	G	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr10	130169375	130169376	chr10:130169376:G:A	rs16910163	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr10	130337440	130337441	chr10:130337441:G:C	rs900909	G	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr10	130351310	130351311	chr10:130351311:A:G	rs3858304	A	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr10	130351350	130351351	chr10:130351351:G:A	rs12356523	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr10	130408306	130408307	chr10:130408307:C:T	rs7922386	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr10	130501032	130501033	chr10:130501033:A:G	rs7078154	A	G	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr10	130807517	130807518	chr10:130807518:G:A	rs60033165	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr10	130807525	130807526	chr10:130807526:G:A	rs1703661	G	A	A	Sox3.mouse_HMG_3	7	1	+	4.355446228628416	-2.1981024860293106	AATGCCTGTTATTCATA
chr10	130874331	130874332	chr10:130874332:T:C	rs10829828	T	C	C	Sox3.mouse_HMG_3	2	1	-	5.7137394140976445	4.6920881665656635	TAAGAATGGTATTAATT
chr10	130934956	130934957	chr10:130934957:A:T	rs930242	A	T	T	Sox3.mouse_HMG_3	2	1	-	2.2925209867429395	-3.4348077275966817	ATTAAATGATTTTCATA
chr10	130934957	130934958	chr10:130934958:A:C	rs930243	A	C	C	Sox3.mouse_HMG_3	1	1	-	2.2925209867429395	2.1624678584947423	ATTAAATGATTTTCATA
chr10	131000008	131000009	chr10:131000009:C:G	rs142967335	C	G	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr10	131013582	131013583	chr10:131013583:A:G	rs7896816	A	G	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr10	131017561	131017562	chr10:131017562:G:A	rs7072306	G	A	G	Sox3.mouse_HMG_3	16	1	-	5.489758867352371	6.35668560682465	GGTGAGTGTCAGTCATC
chr10	131017579	131017580	chr10:131017580:C:T	rs7073330	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr10	131122980	131122981	chr10:131122981:G:C	rs12415526	G	C	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr10	131144361	131144362	chr10:131144362:G:A	rs12571702	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr10	131144368	131144369	chr10:131144369:G:A	chr10:131144369:G:A	G	A	G	Sox3.mouse_HMG_3	1	1	+	2.6659181477569285	5.766048084194223	GGAGAATGCCAGTCACT
chr10	131250576	131250577	chr10:131250577:T:C	rs76634898	T	C	C	Sox3.mouse_HMG_3	10	1	-	1.4100864473891817	-5.197864194151616	GATGAGTGACAGCCAGG
chr10	131252567	131252568	chr10:131252568:T:C	rs2918087	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr10	131260774	131260775	chr10:131260775:C:A	rs11017847	C	A	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr10	131290739	131290740	chr10:131290740:A:C	rs1968518	A	C	C	Sox3.mouse_HMG_3	4	1	-	0.7786221173228841	1.003246053807528	AATGTATGGCCTTCAGT
chr10	131450417	131450418	chr10:131450418:G:A	rs79356415	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr10	131519642	131519643	chr10:131519643:T:C	rs72851717	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	131524568	131524569	chr10:131524569:C:G	rs10830022	C	G	G	Sox3.mouse_HMG_3	0	1	+	0.5577316699550061	2.2815231690916256	CATGAAGGGCTGTCATC
chr10	131650268	131650269	chr10:131650269:A:G	rs7096432	A	G	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr10	131767365	131767366	chr10:131767366:C:T	rs4611133	C	T	C	Sox3.mouse_HMG_3	16	1	-	4.8921836181382945	4.856243161685769	TATGAGTTACAGTCACG
chr10	131895879	131895880	chr10:131895880:G:A	rs903997149	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr10	131932973	131932974	chr10:131932974:A:C	rs4880334	A	C	C	Sox3.mouse_HMG_3	7	1	-	2.0519882138645578	2.90202115609463	AATTAATTGTATTCTAG
chr10	132063514	132063515	chr10:132063515:C:T	rs576071685	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr10	132098964	132098965	chr10:132098965:A:C	rs11146168	A	C	c	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr10	132112603	132112604	chr10:132112604:C:T	rs7923067	C	T	C	Sox3.mouse_HMG_3	13	1	+	0.8789094438881885	-5.728351166573832	TGTGAATGTCTTGCATT
chr10	132142417	132142418	chr10:132142418:G:A	rs12778266	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr10	132164575	132164576	chr10:132164576:G:A	rs77822814	G	A	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr10	132313571	132313572	chr10:132313572:T:C	rs7078903	T	C	C	Sox3.mouse_HMG_3	15	1	+	0.7045229944493194	-4.009870417265749	AGTGGATGCCAGTCCTG
chr10	132467483	132467484	chr10:132467484:G:A	rs116494749	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr10	132582826	132582827	chr10:132582827:A:C	rs2492768	A	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr10	132587055	132587056	chr10:132587056:C:T	rs2786889	C	T	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr10	132666189	132666190	chr10:132666190:C:G	rs115741435	C	G	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr10	132683161	132683162	chr10:132683162:T:C	rs897384446	T	C	-	Sox3.mouse_HMG_3	11	1	+	2.080136794163974	-4.0044740319379715	GTTGTATTATATACATA
chr10	132683169	132683170	chr10:132683170:T:A	rs118149985	T	A	-	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr10	133157355	133157356	chr10:133157356:A:G	rs111881818	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr10	133174053	133174054	chr10:133174054:C:T	rs146175867	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr10	133403593	133403594	chr10:133403594:G:A	rs141822689	G	A	g	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr10	133429368	133429369	chr10:133429369:G:A	rs2245170	G	A	g	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr11	289552	289553	chr11:289553:G:C	rs3932433	G	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	316930	316931	chr11:316931:T:A	rs73398508	T	A	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr11	662919	662920	chr11:662920:A:C	chr11:662920:A:C	A	C	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr11	662921	662922	chr11:662922:C:T	rs116623001	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr11	1090035	1090036	chr11:1090036:T:C	rs10902088	T	C	C	Sox3.mouse_HMG_3	10	1	-	1.9136446507100175	-4.69430599083078	AGTGGATGCCATTGATG
chr11	1342359	1342360	chr11:1342360:C:G	rs186082394	C	G	c	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	1374090	1374091	chr11:1374091:G:A	rs11024281	G	A	g	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr11	1387610	1387611	chr11:1387611:G:A	rs191536101	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr11	1589530	1589531	chr11:1589531:T:C	rs11035024	T	C	-	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	1634105	1634106	chr11:1634106:G:A	rs56183608	G	A	-	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr11	1651880	1651881	chr11:1651881:T:G	rs34185047	T	G	N	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr11	1703200	1703201	chr11:1703201:G:A	rs76082460	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr11	1730133	1730134	chr11:1730134:A:T	rs16927524	A	T	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr11	2202428	2202429	chr11:2202429:C:A	rs35840390	C	A	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr11	2213568	2213569	chr11:2213569:G:A	rs918657208	G	A	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr11	2294164	2294165	chr11:2294165:G:T	rs748760753	G	T	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr11	2410167	2410168	chr11:2410168:C:T	rs569145555	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr11	2481088	2481089	chr11:2481089:C:T	rs12576239	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr11	2481095	2481096	chr11:2481096:G:A	rs11022996	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr11	2700888	2700889	chr11:2700889:C:T	rs56134303	C	T	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr11	2816510	2816511	chr11:2816511:G:C	rs12285496	G	C	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr11	2949624	2949625	chr11:2949625:A:G	rs2073843	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr11	3073120	3073121	chr11:3073121:A:G	rs144237443	A	G	-	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr11	3214488	3214489	chr11:3214489:A:G	rs12292442	A	G	G	Sox3.mouse_HMG_3	14	1	+	1.9753133161976835	-4.406632850229228	TTTGAATTGTGTTTATG
chr11	3237574	3237575	chr11:3237575:T:C	rs4542391	T	C	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr11	3415473	3415474	chr11:3415474:G:A	rs1063709	G	A	g	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr11	3415504	3415505	chr11:3415505:C:T	rs11027069	C	T	c	Sox3.mouse_HMG_3	5	1	-	5.327129674581301	11.815964596652165	GATGAGTGTCTTTCATG
chr11	3489518	3489519	chr11:3489519:G:T	rs56413512	G	T	-	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr11	3607829	3607830	chr11:3607830:T:C	rs72852279	T	C	t	Sox3.mouse_HMG_3	6	1	+	2.494970614033398	-4.112980027507399	GATGGATGGCACTCAGT
chr11	3626297	3626298	chr11:3626298:A:C	rs17173897	A	C	N	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	3626299	3626300	chr11:3626300:C:G	rs17173896	C	G	c	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr11	3702550	3702551	chr11:3702551:G:C	rs35404087	G	C	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr11	3736997	3736998	chr11:3736998:A:G	rs276909	A	G	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr11	3886148	3886149	chr11:3886149:C:T	rs10835239	C	T	C	Sox3.mouse_HMG_3	3	1	-	2.471069573308866	-3.310495314220363	AATGTGTGATATTCAAG
chr11	3886156	3886157	chr11:3886157:G:T	rs113394690	G	T	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	3960257	3960258	chr11:3960258:A:G	rs10835390	A	G	a	Sox3.mouse_HMG_3	2	1	-	3.1722515048171376	-3.433627613413793	GATGCATTTCATTTATT
chr11	4026624	4026625	chr11:4026625:C:G	rs4910875	C	G	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr11	4285985	4285986	chr11:4285986:T:C	rs61897568	T	C	-	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr11	4508937	4508938	chr11:4508938:A:G	rs2435539	A	G	N	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr11	4508966	4508967	chr11:4508967:A:G	rs2898960	A	G	N	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr11	4509542	4509543	chr11:4509543:G:A	rs117101899	G	A	g	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr11	4645983	4645984	chr11:4645984:T:C	rs7102992	T	C	T	Sox3.mouse_HMG_3	15	1	+	2.055431186563836	-2.6589622251512326	TTTGAGTGGAAGTCATG
chr11	4661883	4661884	chr11:4661884:C:T	rs11033236	C	T	T	Sox3.mouse_HMG_3	13	1	+	2.013415324334651	-4.593845286127369	GTAGAAAGACATTCATT
chr11	4663746	4663747	chr11:4663747:T:C	rs17225234	T	C	T	Sox3.mouse_HMG_3	6	1	+	1.702118385449895	-4.905832256090902	TAGGAATGTCAGACAAA
chr11	4734932	4734933	chr11:4734933:T:C	rs10219292	T	C	T	Sox3.mouse_HMG_3	14	1	-	0.1933842453448933	-6.188561921082018	GCTGTATGCCAGGCATA
chr11	4887769	4887770	chr11:4887770:A:G	rs2595982	A	G	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr11	5038783	5038784	chr11:5038784:T:C	rs2499977	T	C	.	Sox3.mouse_HMG_3	4	1	-	5.224426641564144	-1.158390086429923	TATAAATGTTATACATT
chr11	5038785	5038786	chr11:5038786:A:C	rs2499978	A	C	.	Sox3.mouse_HMG_3	2	1	-	5.224426641564144	-1.5245533203074575	TATAAATGTTATACATT
chr11	5044985	5044986	chr11:5044986:A:G	rs1378737	A	G	.	Sox3.mouse_HMG_3	8	1	+	2.0153968565899563	2.6385135037677694	TATGTATTACATTGAAA
chr11	5223173	5223174	chr11:5223174:A:G	rs10837628	A	G	A	Sox3.mouse_HMG_3	14	1	-	3.0736130104422204	3.0736130104422204	TTAGAATTGCATTCTTG
chr11	5236931	5236932	chr11:5236932:A:G	rs4320977	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr11	5534320	5534321	chr11:5534321:T:C	rs10838277	T	C	T	Sox3.mouse_HMG_3	14	1	-	2.1135691182467804	-4.26837704818013	AAAGAAGTTCATTCAAA
chr11	5677724	5677725	chr11:5677725:A:G	rs10769173	A	G	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr11	5736831	5736832	chr11:5736832:T:C	rs7397032	T	C	t	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr11	5818894	5818895	chr11:5818895:A:G	rs61875921	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr11	5818923	5818924	chr11:5818924:G:C	rs11039150	G	C	G	Sox3.mouse_HMG_3	11	1	+	-0.08673128792146634	-4.736906013727604	TATGAGATCCAGTCAGG
chr11	6411993	6411994	chr11:6411994:C:G	rs10769692	C	G	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr11	6613427	6613428	chr11:6613428:C:G	rs1045450	C	G	-	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr11	6670530	6670531	chr11:6670531:T:C	rs11603631	T	C	T	Sox3.mouse_HMG_3	6	1	+	4.268820481272321	-2.339130160268475	GGTGAATTGTCTTCAGT
chr11	6833667	6833668	chr11:6833668:C:G	rs2741809	C	G	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr11	7168600	7168601	chr11:7168601:A:G	rs11041227	A	G	A	Sox3.mouse_HMG_3	10	1	-	8.388512475306644	8.388512475306644	TATGAATGTCTTTCAGA
chr11	7382660	7382661	chr11:7382661:T:A	rs7951496	T	A	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr11	7384720	7384721	chr11:7384721:G:C	rs77141076	G	C	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr11	7447820	7447821	chr11:7447821:G:A	rs7110975	G	A	g	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr11	7474345	7474346	chr11:7474346:A:T	rs10839787	A	T	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr11	7630194	7630195	chr11:7630195:C:T	rs560871977	C	T	C	Sox3.mouse_HMG_3	13	1	+	5.5437985669780465	-1.0634620434839732	TTTGAAGGATATTCAGG
chr11	7793474	7793475	chr11:7793475:T:C	rs73404875	T	C	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr11	7793504	7793505	chr11:7793505:T:G	rs73404876	T	G	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr11	8248696	8248697	chr11:8248697:T:C	rs3794012	T	C	t	Sox3.mouse_HMG_3	11	1	+	0.8497558649114996	-5.234854961190445	CATGAAAGCCATTCGGG
chr11	8300174	8300175	chr11:8300175:T:C	rs11041854	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr11	8326006	8326007	chr11:8326007:C:T	rs147887723	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr11	8680288	8680289	chr11:8680289:C:T	rs10840106	C	T	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr11	8701368	8701369	chr11:8701369:A:G	rs6483741	A	G	G	Sox3.mouse_HMG_3	1	1	+	4.161989336364421	1.061859399927129	CATGAATGACATGCCTG
chr11	8774239	8774240	chr11:8774240:C:T	rs151226956	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr11	9567031	9567032	chr11:9567032:G:A	rs4910479	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr11	9604053	9604054	chr11:9604054:C:T	rs78022392	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr11	9703289	9703290	chr11:9703290:C:T	rs2572940	C	T	C	Sox3.mouse_HMG_3	2	1	-	1.6470823151809966	2.6687335627129785	ACGGAATGTTATTCAGC
chr11	10118122	10118123	chr11:10118123:C:G	rs759084372	C	G	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr11	10439849	10439850	chr11:10439850:G:A	rs73407718	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr11	10444970	10444971	chr11:10444971:T:C	rs72856184	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr11	10655439	10655440	chr11:10655440:T:C	rs2098839	T	C	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr11	10686719	10686720	chr11:10686720:A:G	rs716381	A	G	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr11	10892350	10892351	chr11:10892351:T:C	rs7105644	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr11	11011389	11011390	chr11:11011390:T:C	rs6484608	T	C	A	Sox3.mouse_HMG_3	9	1	+	1.28523784861888	1.277601171627134	GATGAATACTAGACAAT
chr11	11304753	11304754	chr11:11304754:A:G	rs10831581	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr11	11392005	11392006	chr11:11392006:T:A	rs115838642	T	A	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr11	11401059	11401060	chr11:11401060:T:C	rs10765846	T	C	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr11	11401091	11401092	chr11:11401092:C:T	chr11:11401092:C:T	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr11	11613057	11613058	chr11:11613058:C:G	rs73413685	C	G	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr11	11619476	11619477	chr11:11619477:T:A	rs7358384	T	A	A	Sox3.mouse_HMG_3	10	1	-	0.5976342388053664	-6.153417246376104	AGTGGGTGCCAGTCATG
chr11	11623052	11623053	chr11:11623053:G:A	rs10765875	G	A	A	Sox3.mouse_HMG_3	9	1	-	0.6742975688676835	0.6819342458594295	AAGGAATTCCGTTCAGG
chr11	11661861	11661862	chr11:11661862:A:G	rs72855213	A	G	A	Sox3.mouse_HMG_3	15	1	-	0.8091784392412181	-3.9052149724738503	CATGAAGGATTGTCATT
chr11	11758688	11758689	chr11:11758689:T:C	rs10831669	T	C	C	Sox3.mouse_HMG_3	6	1	+	3.5195195508824053	-3.088431090658391	GATGAATTCCAGTTGTA
chr11	11809313	11809314	chr11:11809314:C:G	rs897364	C	G	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr11	11825198	11825199	chr11:11825199:G:C	rs72854898	G	C	G	Sox3.mouse_HMG_3	15	1	-	3.3014536668275087	4.893256267449336	GCTGAATGTTATTCCCG
chr11	11845460	11845461	chr11:11845461:G:T	rs116900319	G	T	G	Sox3.mouse_HMG_3	8	1	-	10.743569037485635	10.563235058985754	AATGAATTCTATTCCTA
chr11	11989961	11989962	chr11:11989962:T:C	rs4910430	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr11	12030202	12030203	chr11:12030203:T:C	rs79681203	T	C	T	Sox3.mouse_HMG_3	6	1	+	2.8360622008915692	-3.771888440649227	AATGAATGGCAGTGGTT
chr11	12044286	12044287	chr11:12044287:C:A	rs150252599	C	A	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr11	12049108	12049109	chr11:12049109:G:A	rs117895018	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr11	12049109	12049110	chr11:12049110:C:A	rs139440898	C	A	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr11	12049117	12049118	chr11:12049118:G:A	rs16910421	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr11	12076279	12076280	chr11:12076280:C:G	rs11022154	C	G	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr11	12104804	12104805	chr11:12104805:C:T	rs12803936	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr11	12114056	12114057	chr11:12114057:C:G	rs1159649	C	G	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr11	12123336	12123337	chr11:12123337:T:C	rs922829035	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr11	12147753	12147754	chr11:12147754:G:A	rs4644628	G	A	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr11	12183228	12183229	chr11:12183229:G:A	rs115259913	G	A	G	Sox3.mouse_HMG_3	9	1	-	1.8734408523046204	1.8810775292963664	AATGTATTACATCCAAA
chr11	12238807	12238808	chr11:12238808:C:T	rs11022262	C	T	C	Sox3.mouse_HMG_3	13	1	+	-0.07529190661449436	-6.682552517076514	GGTGAAGGGTATGCAGG
chr11	12238810	12238811	chr11:12238811:G:A	rs57315506	G	A	G	Sox3.mouse_HMG_3	16	1	+	-0.07529190661449436	-0.11123236306702	GGTGAAGGGTATGCAGG
chr11	12264404	12264405	chr11:12264405:G:A	rs903208	G	A	T	Sox3.mouse_HMG_3	0	1	+	0.39123707894335835	-0.43404682220298585	GAAGTATAGTATTCATG
chr11	12293787	12293788	chr11:12293788:C:A	rs79609470	C	A	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr11	12398197	12398198	chr11:12398198:G:A	rs538295975	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr11	12420875	12420876	chr11:12420876:A:T	rs761791668	A	T	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr11	12452276	12452277	chr11:12452277:C:T	rs61875561	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr11	12556952	12556953	chr11:12556953:C:T	rs145583137	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr11	12620077	12620078	chr11:12620078:T:C	rs7128918	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr11	12832938	12832939	chr11:12832939:T:C	chr11:12832939:T:C	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr11	12950816	12950817	chr11:12950817:C:G	rs116460963	C	G	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr11	13106345	13106346	chr11:13106346:C:A	rs6486088	C	A	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr11	13176534	13176535	chr11:13176535:G:A	rs71481082	G	A	g	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr11	13183268	13183269	chr11:13183269:G:A	rs556662771	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr11	13183286	13183287	chr11:13183287:G:A	rs6486101	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr11	13183723	13183724	chr11:13183724:A:G	rs56177310	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr11	13183759	13183760	chr11:13183760:A:G	rs147786605	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr11	13229744	13229745	chr11:13229745:T:A	rs77027554	T	A	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr11	13246596	13246597	chr11:13246597:C:T	rs11022718	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr11	13996213	13996214	chr11:13996214:C:T	rs12282380	C	T	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr11	14202619	14202620	chr11:14202620:C:T	rs11607537	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr11	14223578	14223579	chr11:14223579:T:C	rs11023149	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr11	14393990	14393991	chr11:14393991:G:A	rs11023206	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr11	14399554	14399555	chr11:14399555:A:G	rs9667144	A	G	A	Sox3.mouse_HMG_3	2	1	-	4.414824959713984	-2.191054158516948	CATGAATTGCATTCCCT
chr11	14413878	14413879	chr11:14413879:C:T	rs548164009	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	14687777	14687778	chr11:14687778:A:G	rs7938266	A	G	A	Sox3.mouse_HMG_3	10	1	+	1.574733079430545	-5.033217562110252	TATGGATGACATACAGT
chr11	16018926	16018927	chr11:16018927:G:T	rs16932458	G	T	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr11	16194926	16194927	chr11:16194927:C:T	rs7931734	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr11	16327114	16327115	chr11:16327115:T:C	rs10832593	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr11	16378937	16378938	chr11:16378938:A:T	rs66906527	A	T	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr11	16378988	16378989	chr11:16378989:A:C	rs57463944	A	C	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr11	16632385	16632386	chr11:16632386:T:C	rs560309121	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr11	16632423	16632424	chr11:16632424:T:C	rs72632980	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr11	16854160	16854161	chr11:16854161:G:C	rs732730	G	C	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr11	16859797	16859798	chr11:16859798:G:A	rs116918558	G	A	G	Sox3.mouse_HMG_3	8	1	-	4.812131462329212	4.550011717413106	ACTGAATGCCTTTCAAG
chr11	16902292	16902293	chr11:16902293:A:G	rs80160188	A	G	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr11	16902305	16902306	chr11:16902306:G:A	rs138815482	G	A	G	Sox3.mouse_HMG_3	10	1	+	3.168393733892998	9.776344375433798	TATGAATTGCGTACAAG
chr11	16903498	16903499	chr11:16903499:C:T	rs177544	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr11	16982602	16982603	chr11:16982603:T:C	rs4757470	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr11	17239370	17239371	chr11:17239371:A:T	rs10832750	A	T	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr11	17276330	17276331	chr11:17276331:G:A	rs115148100	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr11	17750922	17750923	chr11:17750923:A:T	rs10766427	A	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr11	17751778	17751779	chr11:17751779:A:G	rs7941164	A	G	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr11	17889439	17889440	chr11:17889440:A:C	rs509688	A	C	A	Sox3.mouse_HMG_3	11	1	+	1.2180267356526182	1.2180267356526182	AGTGAAATCCAATCATG
chr11	17889459	17889460	chr11:17889460:A:G	rs7107811	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr11	17891622	17891623	chr11:17891623:C:T	rs61882440	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr11	18171632	18171633	chr11:18171633:C:T	rs74613122	C	T	c	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr11	18255267	18255268	chr11:18255268:G:A	rs12419567	G	A	g	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr11	18529964	18529965	chr11:18529965:G:A	rs78805444	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr11	18618750	18618751	chr11:18618751:T:C	rs79804264	T	C	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr11	18864353	18864354	chr11:18864354:G:A	rs141525972	G	A	.	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr11	18933013	18933014	chr11:18933014:G:A	rs3923247	G	A	-	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr11	19382602	19382603	chr11:19382603:G:A	rs56190229	G	A	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr11	19389571	19389572	chr11:19389572:C:G	rs145553143	C	G	C	Sox3.mouse_HMG_3	3	1	+	1.6599672713902325	8.409458007095283	GATCAAGGACAGTCATC
chr11	19660360	19660361	chr11:19660361:T:C	rs1410164488	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr11	19660370	19660371	chr11:19660371:C:T	rs75295198	C	T	C	Sox3.mouse_HMG_3	11	1	-	1.0181402789838772	-3.632034446822261	GGTGAGTGACAGTGATG
chr11	19827760	19827761	chr11:19827761:T:A	rs796122089	T	A	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr11	19827775	19827776	chr11:19827776:T:G	rs796674885	T	G	T	Sox3.mouse_HMG_3	2	1	+	2.5686297851092057	-4.180350176762399	ACTGAATGACAGCCAAT
chr11	19828375	19828376	chr11:19828376:C:A	rs1169861556	C	A	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr11	19886577	19886578	chr11:19886578:G:A	rs75041274	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr11	19918217	19918218	chr11:19918218:C:T	rs2099895	C	T	T	Sox3.mouse_HMG_3	16	1	-	-0.19695194388368664	-0.23289240033621228	AATGAATGGCAGACCCG
chr11	19924692	19924693	chr11:19924693:G:A	rs920719	G	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr11	19935664	19935665	chr11:19935665:G:A	rs12270191	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr11	19993505	19993506	chr11:19993506:T:C	rs4757022	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr11	19995012	19995013	chr11:19995013:A:G	rs7111951	A	G	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr11	20032200	20032201	chr11:20032201:G:T	rs74730364	G	T	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr11	20032212	20032213	chr11:20032213:C:T	rs4757025	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr11	20188849	20188850	chr11:20188850:T:C	rs12272729	T	C	T	Sox3.mouse_HMG_3	12	1	+	2.4877204790873955	-3.705133088313371	TGTGAATGACAGTGACA
chr11	20227938	20227939	chr11:20227939:G:A	rs115117980	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr11	20460876	20460877	chr11:20460877:T:G	rs7125358	T	G	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr11	20488450	20488451	chr11:20488451:C:T	rs58746088	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr11	20612246	20612247	chr11:20612247:A:G	rs79071855	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr11	20723526	20723527	chr11:20723527:G:T	rs11025709	G	T	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr11	20730154	20730155	chr11:20730155:T:G	rs1792978	T	G	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr11	20939458	20939459	chr11:20939459:G:C	rs4923185	G	C	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr11	20984764	20984765	chr11:20984765:T:C	rs10741862	T	C	T	Sox3.mouse_HMG_3	1	1	-	1.8399801141179069	-1.2601498223193874	CATAAATGTTGGTCATT
chr11	21038063	21038064	chr11:21038064:T:G	rs10833433	T	G	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr11	21750493	21750494	chr11:21750494:T:C	rs1356101788	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr11	22084923	22084924	chr11:22084924:A:G	rs11026408	A	G	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr11	22681528	22681529	chr11:22681529:C:T	rs12787124	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr11	22875881	22875882	chr11:22875882:T:C	rs117098997	T	C	T	Sox3.mouse_HMG_3	10	1	-	9.74329460254474	3.135343961003941	TATGAATTATATTTATT
chr11	22976386	22976387	chr11:22976387:G:A	chr11:22976387:G:A	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr11	23021678	23021679	chr11:23021679:A:G	rs1808511	A	G	G	Sox3.mouse_HMG_3	2	1	-	2.3783038601717372	-4.2275752580591925	TATGAAAGGCTTTCAGG
chr11	23021681	23021682	chr11:23021682:C:G	rs2002608	C	G	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr11	23077733	23077734	chr11:23077734:T:C	rs11026965	T	C	T	Sox3.mouse_HMG_3	16	1	-	1.7644196037126307	1.8003600601651564	ATTGAATTAAAGTCACA
chr11	23104513	23104514	chr11:23104514:A:G	rs12223755	A	G	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr11	23104549	23104550	chr11:23104550:G:C	rs1991338	G	C	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr11	23479704	23479705	chr11:23479705:A:C	rs7932299	A	C	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr11	23726028	23726029	chr11:23726029:A:G	rs7943495	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr11	23847712	23847713	chr11:23847713:G:A	rs11027565	G	A	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr11	23875182	23875183	chr11:23875183:T:C	rs7934469	T	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr11	23928773	23928774	chr11:23928774:T:C	rs1919221	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr11	24391227	24391228	chr11:24391228:C:T	rs77207293	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr11	24513747	24513748	chr11:24513748:A:G	rs7112207	A	G	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr11	24589673	24589674	chr11:24589674:G:C	rs10834400	G	C	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr11	24900539	24900540	chr11:24900540:C:A	rs10834539	C	A	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr11	25318221	25318222	chr11:25318222:C:A	rs11028588	C	A	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr11	25395039	25395040	chr11:25395040:T:C	rs371583616	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr11	25571699	25571700	chr11:25571700:G:C	rs11028769	G	C	G	Sox3.mouse_HMG_3	13	1	-	1.6878224937667499	-4.91943811669527	GAAGAATGGCAGACAGT
chr11	25615165	25615166	chr11:25615166:T:C	rs4562787	T	C	C	Sox3.mouse_HMG_3	4	1	-	1.222086945361743	-5.160729782632324	AAAGAATTGAAGTCAGA
chr11	26025904	26025905	chr11:26025905:A:G	rs11029100	A	G	A	Sox3.mouse_HMG_3	2	1	-	7.808304073859234	1.2024249556283035	GCTGAATATTATTCATA
chr11	26084217	26084218	chr11:26084218:G:A	rs73435435	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	26254595	26254596	chr11:26254596:G:A	rs12224061	G	A	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr11	26277004	26277005	chr11:26277005:C:T	rs115016486	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr11	26277028	26277029	chr11:26277029:G:T	rs2100820	G	T	G	Sox3.mouse_HMG_3	9	1	-	5.474385046011257	-0.5798335784970629	TATGAATGGCAGCCACT
chr11	26277031	26277032	chr11:26277032:A:G	rs571389344	A	G	A	Sox3.mouse_HMG_3	6	1	-	5.474385046011257	-1.1335655955295412	TATGAATGGCAGCCACT
chr11	26584541	26584542	chr11:26584542:A:T	rs1690067	A	T	T	Sox3.mouse_HMG_3	16	1	+	4.302029497825764	3.1510404380732675	ACTGGATTCTATTCAAA
chr11	26618826	26618827	chr11:26618827:T:C	rs439961	T	C	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr11	26735008	26735009	chr11:26735009:T:C	rs4923384	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr11	27141797	27141798	chr11:27141798:G:A	rs79967542	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr11	27196307	27196308	chr11:27196308:C:T	rs12287984	C	T	c	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr11	27247172	27247173	chr11:27247173:A:T	rs4923437	A	T	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	27294958	27294959	chr11:27294959:T:C	rs182681715	T	C	T	Sox3.mouse_HMG_3	1	1	+	4.504804626583701	3.298021920916903	CTTGAATGGTAGTAAAG
chr11	27452337	27452338	chr11:27452338:A:T	rs562869070	A	T	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr11	27469209	27469210	chr11:27469210:A:G	chr11:27469210:A:G	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr11	27572022	27572023	chr11:27572023:A:G	rs12269837	A	G	A	Sox3.mouse_HMG_3	16	1	-	3.63924678827963	2.772320048807351	AAAGAACTCTATTCATT
chr11	27660367	27660368	chr11:27660368:T:C	rs117314519	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr11	28179492	28179493	chr11:28179493:T:A	chr11:28179493:T:A	T	A	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr11	28324981	28324982	chr11:28324982:C:G	rs118152904	C	G	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr11	28833829	28833830	chr11:28833830:A:C	rs148950439	A	C	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr11	28833989	28833990	chr11:28833990:T:A	rs16918334	T	A	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr11	28834012	28834013	chr11:28834013:G:A	rs72889471	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.434410269414306	-4.347154618114925	TTTGAATTATTTTCCTG
chr11	28852966	28852967	chr11:28852967:A:G	rs11825315	A	G	A	Sox3.mouse_HMG_3	9	1	-	0.4724269584731835	0.46479028148143753	AGTGAATCCTTGTCATG
chr11	29053171	29053172	chr11:29053172:G:C	rs10835469	G	C	G	Sox3.mouse_HMG_3	11	1	+	3.3600364494418598	-1.2901382763642786	TATGTATTGCTGTCATG
chr11	29125553	29125554	chr11:29125554:T:C	rs6484426	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr11	29207101	29207102	chr11:29207102:C:T	rs117434351	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr11	29484735	29484736	chr11:29484736:A:G	rs501827	A	G	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr11	30046242	30046243	chr11:30046243:A:G	rs7125619	A	G	A	Sox3.mouse_HMG_3	4	1	+	3.4443884877603352	-2.9384282402337343	AGTAAATGGCAATCATA
chr11	30206716	30206717	chr11:30206717:C:T	rs653518	C	T	C	Sox3.mouse_HMG_3	15	1	+	1.224853167129616	5.939246578844684	AGTGAATTTCAGTCCCA
chr11	30314877	30314878	chr11:30314878:A:T	rs3904780	A	T	A	Sox3.mouse_HMG_3	6	1	+	1.6897865281957942	8.440838013377267	TATGAAATTTTTTCAAG
chr11	30425521	30425522	chr11:30425522:C:T	rs7109261	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr11	30523263	30523264	chr11:30523264:G:A	rs12287996	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr11	30545863	30545864	chr11:30545864:C:T	rs476159	C	T	T	Sox3.mouse_HMG_3	3	1	-	3.702669748601636	-2.0788951389275967	TATGTATATCAGTCATG
chr11	30545874	30545875	chr11:30545875:T:A	rs35695296	T	A	a	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr11	30557937	30557938	chr11:30557938:C:T	rs521069	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr11	30639481	30639482	chr11:30639482:C:T	rs808401	C	T	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr11	30718790	30718791	chr11:30718791:T:A	rs292439	T	A	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr11	31502775	31502776	chr11:31502776:G:A	rs1223116	G	A	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr11	31645928	31645929	chr11:31645929:G:A	chr11:31645929:G:A	G	A	G	Sox3.mouse_HMG_3	16	1	+	2.562849552469581	2.5269090960170555	AATGAATCATTTTCAAG
chr11	31645948	31645949	chr11:31645949:A:C	chr11:31645949:A:C	A	C	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr11	31915373	31915374	chr11:31915374:T:C	rs687256	T	C	T	Sox3.mouse_HMG_3	15	1	+	2.57090150907666	-2.143491902638408	AATGGATTTCTTTCATT
chr11	31983426	31983427	chr11:31983427:A:G	rs2658575	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr11	32034182	32034183	chr11:32034183:A:G	rs1301697222	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr11	32052034	32052035	chr11:32052035:T:A	rs2745876	T	A	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr11	32447638	32447639	chr11:32447639:G:A	rs61889251	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr11	32479569	32479570	chr11:32479570:C:T	rs76658564	C	T	C	Sox3.mouse_HMG_3	16	1	-	12.482405255731692	12.446464799279166	GATGAATGTCACTCATG
chr11	32479574	32479575	chr11:32479575:G:T	rs112130953	G	T	G	Sox3.mouse_HMG_3	11	1	-	12.482405255731692	12.482405255731692	GATGAATGTCACTCATG
chr11	33001627	33001628	chr11:33001628:G:C	rs114941463	G	C	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr11	33067018	33067019	chr11:33067019:G:A	rs12276196	G	A	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr11	33215043	33215044	chr11:33215044:A:T	rs7104455	A	T	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr11	33411452	33411453	chr11:33411453:T:C	rs12789282	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr11	33425354	33425355	chr11:33425355:C:A	rs61887170	C	A	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr11	33445812	33445813	chr11:33445813:T:C	rs79459713	T	C	T	Sox3.mouse_HMG_3	2	1	+	2.1311597872975314	-4.474719330933398	AATGAATGTCAGTTTTT
chr11	33707103	33707104	chr11:33707104:G:A	rs1040263832	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr11	33842714	33842715	chr11:33842715:G:A	rs7938708	G	A	G	Sox3.mouse_HMG_3	9	1	-	2.442524394340191	2.450161071331937	TTTGAATTCCAGACACA
chr11	33867107	33867108	chr11:33867108:G:C	rs11032430	G	C	G	Sox3.mouse_HMG_3	8	1	-	2.6150739486148415	3.0578566172927726	TTTGAATTCCAGGCAGT
chr11	34166219	34166220	chr11:34166220:C:G	rs745807	C	G	g	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr11	34205309	34205310	chr11:34205310:C:T	rs2955945	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr11	34290982	34290983	chr11:34290983:C:G	rs2755152	C	G	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr11	34500349	34500350	chr11:34500350:T:A	rs55941777	T	A	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr11	34500369	34500370	chr11:34500370:G:A	rs56291727	G	A	G	Sox3.mouse_HMG_3	0	1	+	4.475492658480151	3.6502087573338073	GATAAATGGCTTTCAAG
chr11	34894208	34894209	chr11:34894209:A:G	rs2986425	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr11	34962114	34962115	chr11:34962115:A:G	rs7929287	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr11	35150574	35150575	chr11:35150575:G:A	rs353623	G	A	G	Sox3.mouse_HMG_3	2	1	-	0.9823509175391959	7.588230035770126	GACGAAGGACATTCAGT
chr11	35153497	35153498	chr11:35153498:T:C	rs353618	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr11	35158355	35158356	chr11:35158356:G:A	rs16926995	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr11	35171580	35171581	chr11:35171581:A:G	rs78726061	A	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr11	35171583	35171584	chr11:35171584:A:C	rs1407822	A	C	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr11	35180589	35180590	chr11:35180590:A:G	rs61881656	A	G	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr11	35208125	35208126	chr11:35208126:T:C	rs1467558	T	C	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr11	35231724	35231725	chr11:35231725:C:T	rs13347	C	T	T	Sox3.mouse_HMG_3	6	1	-	0.5475006148501953	0.5475006148501953	AATGACGTGTAGTCAAG
chr11	35236040	35236041	chr11:35236041:T:A	rs7105545	T	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr11	35319538	35319539	chr11:35319539:G:A	rs10836372	G	A	G	Sox3.mouse_HMG_3	4	1	+	2.3016968165732017	8.68451354456727	CATGGTTGGTATTCAAG
chr11	35345860	35345861	chr11:35345861:T:G	rs11033084	T	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr11	35750697	35750698	chr11:35750698:G:A	rs61881279	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr11	35980757	35980758	chr11:35980758:T:G	rs11033358	T	G	G	Sox3.mouse_HMG_3	5	1	-	6.663762107469204	0.056321442990492354	TCTGTATTTCATTCATG
chr11	36156890	36156891	chr11:36156891:A:G	rs115931135	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.25476559890198	-5.2340693231688835	TGTGTATGTCAGTCACT
chr11	36195851	36195852	chr11:36195852:T:G	rs115496672	T	G	T	Sox3.mouse_HMG_3	16	1	-	2.147430734450158	0.12951493522538282	TCTGAATTTTATGCACA
chr11	36354506	36354507	chr11:36354507:T:C	rs10501150	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr11	36455411	36455412	chr11:36455412:A:G	rs16928896	A	G	A	Sox3.mouse_HMG_3	5	1	+	7.336700135550071	0.8478652134792081	GATGAATGCCAGTGAAT
chr11	36475412	36475413	chr11:36475413:T:C	rs114821635	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr11	36493514	36493515	chr11:36493515:A:G	rs529505854	A	G	A	Sox3.mouse_HMG_3	15	1	-	6.632013096984618	1.9176196852695502	ATTGAAAGACAGTCATA
chr11	36512202	36512203	chr11:36512203:G:A	rs5030411	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr11	36703074	36703075	chr11:36703075:C:T	rs75939870	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr11	36965132	36965133	chr11:36965133:C:G	rs58706519	C	G	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr11	36965152	36965153	chr11:36965153:T:C	rs117820342	T	C	T	Sox3.mouse_HMG_3	2	1	+	3.757400050398923	-2.8484790678320095	AATGTATTTGATTCATT
chr11	37220330	37220331	chr11:37220331:G:A	rs12276774	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr11	37569053	37569054	chr11:37569054:A:G	rs10742391	A	G	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr11	37582753	37582754	chr11:37582754:G:C	rs10768278	G	C	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr11	37948479	37948480	chr11:37948480:T:G	rs75422106	T	G	T	Sox3.mouse_HMG_3	6	1	+	1.9771629471763517	-4.773888538005118	TTTGATTGTTCTTCATG
chr11	37948501	37948502	chr11:37948502:C:A	rs11034539	C	A	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr11	38937724	38937725	chr11:38937725:A:G	rs6485041	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr11	39171738	39171739	chr11:39171739:C:T	rs17712923	C	T	C	Sox3.mouse_HMG_3	16	1	+	5.355520811836559	6.222447551308838	ATTGAATTCGAGTCATC
chr11	39368649	39368650	chr11:39368650:A:T	rs6485085	A	T	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr11	39561529	39561530	chr11:39561530:G:A	rs7124963	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr11	39917259	39917260	chr11:39917260:T:C	rs7938370	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr11	40265722	40265723	chr11:40265723:C:T	rs72891085	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr11	40445511	40445512	chr11:40445512:T:G	rs7927006	T	G	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr11	41003396	41003397	chr11:41003397:T:C	rs61887626	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr11	41497934	41497935	chr11:41497935:A:G	rs12361464	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr11	41522824	41522825	chr11:41522825:T:G	rs1457331	T	G	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr11	42175330	42175331	chr11:42175331:C:T	rs4755594	C	T	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr11	42412948	42412949	chr11:42412949:C:G	rs7929794	C	G	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr11	42412950	42412951	chr11:42412951:G:A	rs7930009	G	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr11	42625589	42625590	chr11:42625590:G:A	rs4359194	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr11	42625604	42625605	chr11:42625605:T:C	rs4584565	T	C	T	Sox3.mouse_HMG_3	14	1	-	2.893853012820301	-3.48809315360661	CTTGAATGATTTTCAAC
chr11	42647811	42647812	chr11:42647812:G:A	rs76788174	G	A	G	Sox3.mouse_HMG_3	11	1	+	0.6590605490692107	-3.991114176736928	GTTGAAATGCAGTGATG
chr11	43218494	43218495	chr11:43218495:C:G	rs16937401	C	G	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	43626817	43626818	chr11:43626818:T:G	rs4237643	T	G	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr11	43907307	43907308	chr11:43907308:G:A	rs11037732	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr11	44001060	44001061	chr11:44001061:G:A	rs7937428	G	A	A	Sox3.mouse_HMG_3	7	1	+	4.791796756032204	-1.7617519586255233	TATTATTGTTATTCATG
chr11	44017087	44017088	chr11:44017088:T:C	rs112377707	T	C	T	Sox3.mouse_HMG_3	5	1	-	0.7629236185344976	-5.7259113035363685	TCTGAATGTCCTTGATG
chr11	44101441	44101442	chr11:44101442:A:G	rs11606372	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr11	44308233	44308234	chr11:44308234:T:C	rs59274618	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr11	44409524	44409525	chr11:44409525:C:A	rs2085035	C	A	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr11	44464944	44464945	chr11:44464945:C:T	rs767220171	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr11	44564983	44564984	chr11:44564984:G:A	rs978812942	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr11	44600606	44600607	chr11:44600607:G:A	rs16938020	G	A	G	Sox3.mouse_HMG_3	3	1	+	0.33045931299973064	-5.451105574529499	TAGGAAAGATAGTCAGG
chr11	44708203	44708204	chr11:44708204:G:A	rs4237647	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr11	44708244	44708245	chr11:44708245:C:T	rs11038119	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	44732314	44732315	chr11:44732315:A:C	rs4498981	A	C	A	Sox3.mouse_HMG_3	2	1	-	0.606057048115966	-6.142922913755639	GATGAAGTATTGTCAAG
chr11	44736847	44736848	chr11:44736848:C:T	rs4755281	C	T	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr11	44761733	44761734	chr11:44761734:G:A	rs79251858	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr11	44845006	44845007	chr11:44845007:C:T	rs12419327	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr11	44901919	44901920	chr11:44901920:G:C	rs12364175	G	C	G	Sox3.mouse_HMG_3	8	1	+	-0.12958390186258095	-0.5723665705405129	GATTAAAGGCAGTCAGT
chr11	45229796	45229797	chr11:45229797:G:A	rs61880323	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr11	45322908	45322909	chr11:45322909:C:G	rs10742748	C	G	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr11	45322911	45322912	chr11:45322912:A:G	rs10742749	A	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	45412611	45412612	chr11:45412612:C:T	rs60977164	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr11	45449949	45449950	chr11:45449950:G:A	rs10769148	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr11	45449969	45449970	chr11:45449970:T:C	rs10769149	T	C	T	Sox3.mouse_HMG_3	5	1	-	3.1241804509929745	-3.3646544710778876	GATGAATGGCATTTCGA
chr11	45696331	45696332	chr11:45696332:C:G	rs12363453	C	G	C	Sox3.mouse_HMG_3	13	1	+	1.6685662812693636	-4.938694329192657	TTTGAGTCCTATTCATT
chr11	45741444	45741445	chr11:45741445:T:G	rs2593753	T	G	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr11	45777414	45777415	chr11:45777415:T:A	rs11038652	T	A	T	Sox3.mouse_HMG_3	11	1	+	1.6542679121215924	-4.430342913980352	ACTGAATTTCTTTCAGT
chr11	45777417	45777418	chr11:45777418:A:C	rs11038653	A	C	A	Sox3.mouse_HMG_3	14	1	+	1.6542679121215924	-4.727678254305318	ACTGAATTTCTTTCAGT
chr11	46149852	46149853	chr11:46149853:G:A	rs3935366	G	A	G	Sox3.mouse_HMG_3	7	1	+	5.981724233153484	-0.5718244815042434	AGTGAAAGGTAGTCATT
chr11	46729850	46729851	chr11:46729851:T:C	rs2282687	T	C	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr11	46765855	46765856	chr11:46765856:C:G	rs4453193	C	G	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr11	47130846	47130847	chr11:47130847:C:G	rs968390243	C	G	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr11	47158309	47158310	chr11:47158310:C:A	rs2291443	C	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr11	47303114	47303115	chr11:47303115:T:A	rs4752824	T	A	A	Sox3.mouse_HMG_3	5	1	-	2.062713779607651	-4.544726884871061	AAAGAATCTCAGTCAAG
chr11	47507164	47507165	chr11:47507165:G:A	rs117127556	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr11	47711481	47711482	chr11:47711482:T:C	rs72911743	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr11	47738288	47738289	chr11:47738289:G:A	rs4752865	G	A	g	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr11	47795737	47795738	chr11:47795738:A:G	rs2904127	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr11	47815855	47815856	chr11:47815856:G:C	rs6485786	G	C	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr11	47870030	47870031	chr11:47870031:T:C	rs11604324	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr11	50421661	50421662	chr11:50421662:C:T	rs3853433	C	T	.	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr11	55324721	55324722	chr11:55324722:A:G	rs11607294	A	G	a	Sox3.mouse_HMG_3	2	1	-	8.881929958821626	2.2760508405906936	CATGAATGTGAGTCATT
chr11	55444652	55444653	chr11:55444653:T:A	rs191261199	T	A	t	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr11	55474982	55474983	chr11:55474983:C:T	rs61917995	C	T	c	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr11	56778746	56778747	chr11:56778747:A:G	rs7117269	A	G	A	Sox3.mouse_HMG_3	10	1	+	0.7612238565845311	-5.8467267849562665	TCTGTTTTGCATTCATG
chr11	57031767	57031768	chr11:57031768:G:A	rs3017319	G	A	G	Sox3.mouse_HMG_3	9	1	-	1.0463534885156627	1.0539901655074069	TGTGAATGACAGGCTTA
chr11	57031769	57031770	chr11:57031770:C:G	rs12795317	C	G	G	Sox3.mouse_HMG_3	7	1	-	1.0463534885156627	-5.207090633691728	TGTGAATGACAGGCTTA
chr11	57328631	57328632	chr11:57328632:A:G	rs78985586	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr11	57386474	57386475	chr11:57386475:G:T	rs10792093	G	T	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr11	57391782	57391783	chr11:57391783:C:G	rs77843118	C	G	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr11	57635376	57635377	chr11:57635377:C:T	rs576269323	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr11	58076033	58076034	chr11:58076034:G:A	rs2513725	G	A	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr11	58318301	58318302	chr11:58318302:A:G	rs1938661	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr11	58714713	58714714	chr11:58714714:C:G	rs521200	C	G	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr11	58730722	58730723	chr11:58730723:T:C	rs958517065	T	C	T	Sox3.mouse_HMG_3	11	1	+	3.8483956618010033	-2.2362151643009414	AATGAGTTATGTTCATA
chr11	59013194	59013195	chr11:59013195:A:G	rs12284080	A	G	.	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr11	59210960	59210961	chr11:59210961:C:A	rs180770562	C	A	.	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr11	59287585	59287586	chr11:59287586:T:G	rs10750913	T	G	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr11	59380751	59380752	chr11:59380752:A:G	rs60823267	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr11	59609358	59609359	chr11:59609359:C:T	rs17153982	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr11	59719807	59719808	chr11:59719808:G:A	rs485803	G	A	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr11	59802761	59802762	chr11:59802762:G:A	rs75768611	G	A	G	Sox3.mouse_HMG_3	3	1	+	4.894458404586066	-0.887106482943165	GGTGATTTTTATTCAGG
chr11	59802794	59802795	chr11:59802795:C:T	rs482356	C	T	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr11	59992626	59992627	chr11:59992627:A:G	rs116905788	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr11	60070103	60070104	chr11:60070104:T:A	rs10897003	T	A	.	Sox3.mouse_HMG_3	10	1	-	3.4342730944576028	-3.3167783907238686	AATAAAATCCATTCATT
chr11	60140451	60140452	chr11:60140452:A:G	rs55711704	A	G	.	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr11	60292336	60292337	chr11:60292337:A:G	rs10750931	A	G	a	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr11	60830975	60830976	chr11:60830976:C:T	rs72915001	C	T	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr11	61022732	61022733	chr11:61022733:A:G	rs77015426	A	G	A	Sox3.mouse_HMG_3	1	1	+	7.898921369460046	4.798791433022754	GATGAATGACAGCCAGG
chr11	61058959	61058960	chr11:61058960:G:A	rs79600673	G	A	G	Sox3.mouse_HMG_3	6	1	-	0.8581582273162449	7.466108868857042	GTTGAACGTTACTCATC
chr11	61095280	61095281	chr11:61095281:G:A	rs115665854	G	A	g	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr11	61327823	61327824	chr11:61327824:T:C	rs28720269	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr11	61327874	61327875	chr11:61327875:A:T	rs17549396	A	T	A	Sox3.mouse_HMG_3	15	1	-	9.159452897000904	6.895643432764082	TGTGAAAGGTATTCATG
chr11	61327895	61327896	chr11:61327896:C:T	rs7397033	C	T	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr11	61513563	61513564	chr11:61513564:C:T	rs3019196	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	61614906	61614907	chr11:61614907:G:A	rs11230752	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr11	61918477	61918478	chr11:61918478:C:T	rs78156005	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr11	61918516	61918517	chr11:61918517:T:C	rs2521561	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr11	62339776	62339777	chr11:62339777:G:C	rs951677	G	C	C	Sox3.mouse_HMG_3	1	1	+	0.36094744295972947	-0.7157821344588726	GGTGGAAGACATTCATC
chr11	63612377	63612378	chr11:63612378:T:C	rs652233	T	C	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr11	63872639	63872640	chr11:63872640:C:T	rs1476760761	C	T	C	Sox3.mouse_HMG_3	7	1	-	2.3312773557823894	-4.2222713588753376	TCTGAATGGTACTCCTA
chr11	64197184	64197185	chr11:64197185:C:T	rs2236648	C	T	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr11	64842993	64842994	chr11:64842994:T:C	rs139175269	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr11	64875829	64875830	chr11:64875830:C:T	rs535457814	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr11	64919043	64919044	chr11:64919044:C:T	rs562841380	C	T	C	Sox3.mouse_HMG_3	3	1	-	0.2227639194153117	-5.55880096811392	TCTGAATGGCTGTCCTA
chr11	65450546	65450547	chr11:65450547:A:G	rs10896000	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr11	65550947	65550948	chr11:65550948:G:A	rs772417952	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	65823241	65823242	chr11:65823242:G:A	rs601887	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr11	65823269	65823270	chr11:65823270:C:G	rs521004	C	G	C	Sox3.mouse_HMG_3	8	1	-	2.71749193547414	2.274709266796208	TCTGAATTGTAGGCAAT
chr11	65911199	65911200	chr11:65911200:G:T	rs76214078	G	T	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr11	66017739	66017740	chr11:66017740:G:A	rs7946140	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr11	66160135	66160136	chr11:66160136:C:T	rs918299	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr11	66182202	66182203	chr11:66182203:T:A	rs6591207	T	A	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr11	66182217	66182218	chr11:66182218:A:C	rs6591208	A	C	A	Sox3.mouse_HMG_3	4	1	+	2.92155864938357	-3.8289828587358157	AGTAATTGGCATTCATA
chr11	66324342	66324343	chr11:66324343:G:A	rs3016311	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr11	67212739	67212740	chr11:67212740:G:A	rs115440009	G	A	G	Sox3.mouse_HMG_3	0	1	-	1.7434787666750955	3.198349412011961	CAAGAAAGTCAGTCATT
chr11	67519997	67519998	chr11:67519998:C:T	rs685350	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr11	67748633	67748634	chr11:67748634:G:A	rs7934722	G	A	-	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr11	67798311	67798312	chr11:67798312:G:T	rs190909183	G	T	-	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr11	68114192	68114193	chr11:68114193:C:T	rs55784130	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr11	68199901	68199902	chr11:68199902:G:A	rs75585189	G	A	G	Sox3.mouse_HMG_3	13	1	-	2.3678851241009897	-4.2393754863610305	TATTAATTCCATTCTTC
chr11	68256273	68256274	chr11:68256274:G:C	rs67976715	G	C	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr11	68336833	68336834	chr11:68336834:C:T	rs648438	C	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr11	68340604	68340605	chr11:68340605:G:A	rs186850143	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr11	68340863	68340864	chr11:68340864:T:C	rs312778	T	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr11	68391733	68391734	chr11:68391734:G:T	rs74790187	G	T	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr11	68653329	68653330	chr11:68653330:G:A	rs948862	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	68668358	68668359	chr11:68668359:A:G	rs4930595	A	G	A	Sox3.mouse_HMG_3	9	1	-	1.0251492060802834	1.0175125290885374	GATGAAAGCTTTTCAGT
chr11	68776076	68776077	chr11:68776077:G:A	rs139788643	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr11	68969495	68969496	chr11:68969496:A:G	rs147436427	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr11	69283338	69283339	chr11:69283339:T:C	rs773287404	T	C	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr11	69416966	69416967	chr11:69416967:G:A	rs577591425	G	A	G	Sox3.mouse_HMG_3	11	1	+	0.5078831027381103	-4.1422916230680284	AAGGAATTCGAGTCAGG
chr11	69416985	69416986	chr11:69416986:A:G	rs57953530	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr11	69572193	69572194	chr11:69572194:A:G	rs660963	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr11	69675232	69675233	chr11:69675233:C:T	rs56107468	C	T	C	Sox3.mouse_HMG_3	7	1	-	1.455713337766093	-5.097835376891637	TATGGCTGGCAGTCAGG
chr11	69867718	69867719	chr11:69867719:A:G	rs758978568	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.3515241572881795	-5.256426484252619	GATAAATGGAACTCATG
chr11	69986610	69986611	chr11:69986611:T:C	rs1492513	T	C	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr11	70341676	70341677	chr11:70341677:A:G	rs6592542	A	G	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr11	70467640	70467641	chr11:70467641:T:C	rs188775855	T	C	T	Sox3.mouse_HMG_3	11	1	+	4.616453349154531	-1.4681574769474135	AATGATTGATATTGATG
chr11	70574442	70574443	chr11:70574443:A:G	rs10899200	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr11	70579544	70579545	chr11:70579545:G:A	rs34962816	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr11	70610662	70610663	chr11:70610663:C:T	rs12421725	C	T	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr11	70740297	70740298	chr11:70740298:C:T	rs535478562	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr11	70942659	70942660	chr11:70942660:G:A	rs78618018	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.3197574685762328	-4.461807418953	GAGGATTTACATTCAGG
chr11	71178984	71178985	chr11:71178985:G:A	rs7933622	G	A	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr11	71402257	71402258	chr11:71402258:C:T	rs1792325	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr11	71944361	71944362	chr11:71944362:A:G	rs116765276	A	G	A	Sox3.mouse_HMG_3	10	1	+	0.5064801993513388	-6.101470442189459	GGTGAATGACATGGATC
chr11	71991630	71991631	chr11:71991631:A:G	rs141194893	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.587579704628953	-4.90125521744191	AATGAATAGCAGTTAAG
chr11	72200468	72200469	chr11:72200469:C:A	rs150347061	C	A	C	Sox3.mouse_HMG_3	3	1	-	2.3534042725216766	-4.553090211993037	AATGAAGTTTGTTCATT
chr11	72396115	72396116	chr11:72396116:T:C	rs7941873	T	C	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr11	72564710	72564711	chr11:72564711:G:A	rs61893930	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr11	72812748	72812749	chr11:72812749:G:T	rs1126205	G	T	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr11	73225225	73225226	chr11:73225226:A:C	rs149924045	A	C	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr11	73249748	73249749	chr11:73249749:T:G	rs1341593581	T	G	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr11	73253748	73253749	chr11:73253749:C:G	rs75226614	C	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr11	73315019	73315020	chr11:73315020:G:A	rs1107039	G	A	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr11	73778966	73778967	chr11:73778967:C:T	rs12793550	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr11	73780173	73780174	chr11:73780174:A:G	rs189465960	A	G	A	Sox3.mouse_HMG_3	4	1	+	2.6691241361055402	-3.7136925918885275	GATGAATGACTGTGATT
chr11	73780178	73780179	chr11:73780179:C:A	rs1435364661	C	A	C	Sox3.mouse_HMG_3	9	1	+	2.6691241361055402	-3.3850944884027774	GATGAATGACTGTGATT
chr11	73856139	73856140	chr11:73856140:A:G	rs7948192	A	G	G	Sox3.mouse_HMG_3	10	1	+	0.7169704457222461	-5.890980195818553	GATGAATGATATGCTGC
chr11	73962671	73962672	chr11:73962672:T:C	rs77822348	T	C	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr11	74146746	74146747	chr11:74146747:C:T	rs61901249	C	T	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr11	74147843	74147844	chr11:74147844:C:T	rs191968849	C	T	C	Sox3.mouse_HMG_3	9	1	+	2.9060392988222636	2.9136759758140096	CATGAAATACATTCCTA
chr11	74279296	74279297	chr11:74279297:A:C	rs112525190	A	C	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr11	74318266	74318267	chr11:74318267:A:G	rs545272481	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr11	74325918	74325919	chr11:74325919:C:T	rs116564629	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr11	74325952	74325953	chr11:74325953:A:G	rs117711717	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr11	74366714	74366715	chr11:74366715:C:T	rs150248375	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr11	74460070	74460071	chr11:74460071:T:C	rs17524	T	C	C	Sox3.mouse_HMG_3	16	1	-	5.234112102533658	5.270052558986183	GATGAATATTTTTCATA
chr11	74460096	74460097	chr11:74460097:A:G	rs17532	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr11	74870565	74870566	chr11:74870566:C:A	rs473080	C	A	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr11	75280305	75280306	chr11:75280306:G:A	rs112564164	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr11	75280328	75280329	chr11:75280329:T:C	rs36006020	T	C	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr11	75311514	75311515	chr11:75311515:G:T	rs4945006	G	T	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr11	75534012	75534013	chr11:75534013:T:C	rs12283626	T	C	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr11	75651482	75651483	chr11:75651483:G:T	rs3862804	G	T	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr11	75967126	75967127	chr11:75967127:G:T	rs114942168	G	T	G	Sox3.mouse_HMG_3	3	1	-	4.670976356652382	5.6389022048282	GATCAATGGCAGGCATA
chr11	76044119	76044120	chr11:76044120:G:C	rs141968149	G	C	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr11	76248276	76248277	chr11:76248277:T:A	rs668161	T	A	C	Sox3.mouse_HMG_3	5	1	-	4.705685705266196	-1.901754959212517	GAGGGATGGCAGTCATG
chr11	76650174	76650175	chr11:76650175:G:A	rs145753653	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr11	76650190	76650191	chr11:76650191:T:C	rs114382639	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr11	76666774	76666775	chr11:76666775:G:A	rs6592657	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr11	76667054	76667055	chr11:76667055:A:G	rs11236843	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr11	76743233	76743234	chr11:76743234:A:C	rs72946102	A	C	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr11	76807429	76807430	chr11:76807430:G:A	rs1687688	G	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr11	76807430	76807431	chr11:76807431:A:G	rs1687689	A	G	G	Sox3.mouse_HMG_3	16	1	-	4.499210964892348	3.632284225420069	CTTGTATTGCAGTCATT
chr11	76807450	76807451	chr11:76807451:A:G	rs1149623	A	G	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr11	76919458	76919459	chr11:76919459:G:A	rs10899313	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr11	77027084	77027085	chr11:77027085:G:T	rs1945084	G	T	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr11	77046922	77046923	chr11:77046923:C:T	rs12292204	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr11	77115305	77115306	chr11:77115306:C:T	rs563266751	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr11	77268419	77268420	chr11:77268420:A:C	rs1618188	A	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	77564037	77564038	chr11:77564038:T:C	rs116910806	T	C	t	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr11	77598612	77598613	chr11:77598613:C:G	rs12801662	C	G	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr11	77602537	77602538	chr11:77602538:G:A	rs713083	G	A	A	Sox3.mouse_HMG_3	7	1	+	5.418684749220509	-1.13486396543722	CATGAATGTGAATCATG
chr11	77602562	77602563	chr11:77602563:A:G	rs114758204	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr11	77788340	77788341	chr11:77788341:C:T	rs7123080	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr11	77999685	77999686	chr11:77999686:A:G	rs112947024	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr11	78066774	78066775	chr11:78066775:C:G	rs10793281	C	G	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr11	78149697	78149698	chr11:78149698:A:G	rs564283	A	G	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr11	78460771	78460772	chr11:78460772:C:A	rs118068872	C	A	C	Sox3.mouse_HMG_3	9	1	+	5.236127736923746	-0.8180908875845715	TGTAAATGGCAGTCAAT
chr11	78699632	78699633	chr11:78699633:C:T	rs67930048	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr11	78715932	78715933	chr11:78715933:A:C	rs144035681	A	C	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr11	78979047	78979048	chr11:78979048:G:A	rs1025595	G	A	G	Sox3.mouse_HMG_3	8	1	+	2.5160532323309885	1.8929365851531752	TAAGAAATGCATTCAGA
chr11	79046592	79046593	chr11:79046593:T:C	rs74878945	T	C	T	Sox3.mouse_HMG_3	11	1	+	5.135274089031447	-0.9493367370704975	TATGACTTGTATTCTTA
chr11	79046608	79046609	chr11:79046609:G:A	rs79483225	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr11	79080555	79080556	chr11:79080556:A:G	rs10793357	A	G	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr11	79168654	79168655	chr11:79168655:C:T	rs7482532	C	T	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr11	79291357	79291358	chr11:79291358:G:A	rs562609	G	A	G	Sox3.mouse_HMG_3	13	1	-	2.019065162077607	-4.588195448384413	TTTGAATTTTACTCTTG
chr11	79318907	79318908	chr11:79318908:C:A	rs580706	C	A	A	Sox3.mouse_HMG_3	1	1	+	-0.2985292330459106	3.878330280809985	ACTGGATGGCTGTCATG
chr11	79663124	79663125	chr11:79663125:A:G	rs55742903	A	G	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr11	79920742	79920743	chr11:79920743:A:G	rs624285	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr11	79922866	79922867	chr11:79922867:C:T	rs2516342	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr11	80091211	80091212	chr11:80091212:G:T	rs7933762	G	T	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr11	80912933	80912934	chr11:80912934:C:T	rs4945463	C	T	C	Sox3.mouse_HMG_3	7	1	-	5.434189273344615	-1.1193594413131112	TATAAATGGTGTTCATT
chr11	81026081	81026082	chr11:81026082:T:C	rs78795705	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr11	81026191	81026192	chr11:81026192:G:A	rs17141360	G	A	G	Sox3.mouse_HMG_3	0	1	+	2.9174885931183487	2.0922046919720048	GAGTAATGCTATTCAAG
chr11	81026215	81026216	chr11:81026216:A:G	rs80249073	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr11	81236857	81236858	chr11:81236858:T:G	rs3019076	T	G	G	Sox3.mouse_HMG_3	16	1	+	2.0548604295477597	3.2417899457527817	AATTAATTTTCTTCATT
chr11	81317427	81317428	chr11:81317428:C:T	rs12222309	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr11	82642800	82642801	chr11:82642801:C:T	rs1939623	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr11	82932717	82932718	chr11:82932718:G:T	rs7947780	G	T	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr11	83054952	83054953	chr11:83054953:C:T	rs957044457	C	T	c	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr11	83473795	83473796	chr11:83473796:G:A	rs2043208	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr11	83521707	83521708	chr11:83521708:C:G	rs1835762	C	G	C	Sox3.mouse_HMG_3	13	1	+	1.2398580426824413	-5.367402567779578	TACCAATTCTATTCAGG
chr11	83680147	83680148	chr11:83680148:C:T	rs1868892	C	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr11	83694401	83694402	chr11:83694402:C:T	rs149410722	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr11	84015880	84015881	chr11:84015881:A:G	rs10898189	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.804805334754546	-3.8031453067862504	AATGATTTATATTCCTT
chr11	84156341	84156342	chr11:84156342:A:C	rs1454018	A	C	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr11	84165031	84165032	chr11:84165032:C:T	rs141586926	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr11	84200929	84200930	chr11:84200930:C:T	rs2168007	C	T	C	Sox3.mouse_HMG_3	8	1	-	3.6578454343255533	3.03472878714774	AATAAAAGGTATTCAAG
chr11	84818208	84818209	chr11:84818209:C:A	rs10792782	C	A	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr11	84901515	84901516	chr11:84901516:C:T	rs11234233	C	T	T	Sox3.mouse_HMG_3	6	1	-	7.479459861866266	7.479459861866266	TTTGAAGGATATTCATT
chr11	85045032	85045033	chr11:85045033:T:C	rs10501586	T	C	T	Sox3.mouse_HMG_3	16	1	-	1.6819307262592342	1.7178711827117599	CAAAAATGACAGTCAAA
chr11	85607401	85607402	chr11:85607402:T:C	rs116874058	T	C	T	Sox3.mouse_HMG_3	14	1	-	1.9045397294419073	-4.477406436985004	TTTGAGTTTCACTCATG
chr11	85721349	85721350	chr11:85721350:G:A	rs11234389	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr11	86163201	86163202	chr11:86163202:G:T	rs11828005	G	T	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr11	86163206	86163207	chr11:86163207:A:C	rs7934191	A	C	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr11	86199628	86199629	chr11:86199629:C:T	rs17210182	C	T	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr11	86246702	86246703	chr11:86246703:A:G	rs2374721	A	G	G	Sox3.mouse_HMG_3	12	1	-	2.7955192238614615	-3.3973343435393053	AATGAACGGTCTTCAAA
chr11	86301766	86301767	chr11:86301767:G:T	chr11:86301767:G:T	G	T	G	Sox3.mouse_HMG_3	8	1	+	2.5679800646005058	1.8630776510064682	TATAAATTGTAGACAAG
chr11	86493312	86493313	chr11:86493313:G:A	rs376697173	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr11	86497571	86497572	chr11:86497572:A:G	rs610842	A	G	G	Sox3.mouse_HMG_3	14	1	+	12.118739606029994	5.7367934396030815	TTTGAATTCCAGTCATT
chr11	86497574	86497575	chr11:86497575:C:G	rs116133966	C	G	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr11	86553071	86553072	chr11:86553072:G:A	rs11234691	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr11	86589403	86589404	chr11:86589404:G:A	rs1945035	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr11	86621314	86621315	chr11:86621315:C:T	rs999472	C	T	C	Sox3.mouse_HMG_3	12	1	-	1.200177128936631	1.4684411155313108	CATGAATTCTATGCCAA
chr11	86717206	86717207	chr11:86717207:A:G	rs148307050	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr11	86718323	86718324	chr11:86718324:G:A	rs11234751	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr11	86746614	86746615	chr11:86746615:C:T	rs4075249	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr11	86815414	86815415	chr11:86815415:A:C	rs7131625	A	C	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr11	86896757	86896758	chr11:86896758:A:G	rs17820361	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	86978405	86978406	chr11:86978406:G:A	rs72479290	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr11	87029181	87029182	chr11:87029182:C:A	rs11234919	C	A	C	Sox3.mouse_HMG_3	1	1	+	1.4254899864121282	5.602349500268021	TCTGAATTACTTTCAGC
chr11	87037008	87037009	chr11:87037009:G:T	rs11234925	G	T	G	Sox3.mouse_HMG_3	8	1	-	3.5700780830637893	3.389744104563908	GAAGAATTCCATTCGAA
chr11	87114317	87114318	chr11:87114318:C:T	rs2445556	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr11	87136361	87136362	chr11:87136362:A:G	rs485773	A	G	G	Sox3.mouse_HMG_3	14	1	+	1.6593225885685134	-4.722623577858397	AATAAATCCCATTCAGT
chr11	87144348	87144349	chr11:87144349:A:G	rs541089	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.245319113172288	-3.4690742985427803	ACTGTATGGCATGCATA
chr11	87144358	87144359	chr11:87144359:T:C	chr11:87144359:T:C	T	C	T	Sox3.mouse_HMG_3	5	1	-	1.245319113172288	-5.243515808898576	ACTGTATGGCATGCATA
chr11	87304764	87304765	chr11:87304765:A:C	rs185586483	A	C	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr11	87307490	87307491	chr11:87307491:G:A	rs11235088	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr11	87355666	87355667	chr11:87355667:A:G	rs2003177	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr11	87444468	87444469	chr11:87444469:G:A	rs7118472	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr11	87572884	87572885	chr11:87572885:A:C	rs4084199	A	C	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr11	87975958	87975959	chr11:87975959:T:C	rs34250015	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr11	88064403	88064404	chr11:88064404:C:A	rs499271	C	A	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr11	88165040	88165041	chr11:88165041:T:C	rs7104374	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr11	88165077	88165078	chr11:88165078:G:A	rs7113064	G	A	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr11	88246871	88246872	chr11:88246872:T:C	rs138925379	T	C	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr11	88360307	88360308	chr11:88360308:T:C	rs4753358	T	C	C	Sox3.mouse_HMG_3	6	1	+	1.2010825442683286	-5.4068680972724685	TAGGAATGGTTTTCAGT
chr11	88384612	88384613	chr11:88384613:G:A	rs577031457	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr11	88478736	88478737	chr11:88478737:A:C	rs308779	A	C	-	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr11	88552862	88552863	chr11:88552863:T:G	rs308785	T	G	T	Sox3.mouse_HMG_3	14	1	-	2.643991332573704	-3.7379548338532067	GTTTAATTGCATTCACT
chr11	88576094	88576095	chr11:88576095:G:A	rs7931809	G	A	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr11	88618739	88618740	chr11:88618740:G:T	rs35034850	G	T	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr11	88660877	88660878	chr11:88660878:T:C	rs61902896	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr11	88737134	88737135	chr11:88737135:C:T	rs12290260	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr11	88757675	88757676	chr11:88757676:A:G	rs2126741	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr11	88799798	88799799	chr11:88799799:C:T	rs4002398	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr11	89334185	89334186	chr11:89334186:A:G	rs10830260	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr11	89555144	89555145	chr11:89555145:T:C	rs2196501	T	C	.	Sox3.mouse_HMG_3	15	1	+	2.6784488162266786	-2.0359445954883895	AATTAATTCCATTCTTT
chr11	89604434	89604435	chr11:89604435:T:G	rs116971302	T	G	t	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr11	90147793	90147794	chr11:90147794:G:T	rs80169737	G	T	.	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr11	90352842	90352843	chr11:90352843:C:T	rs72960891	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr11	90706722	90706723	chr11:90706723:T:C	rs73535159	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr11	90732714	90732715	chr11:90732715:A:G	rs12288659	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr11	91079154	91079155	chr11:91079155:T:C	rs34591058	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr11	91079184	91079185	chr11:91079185:A:G	rs16915484	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	91083660	91083661	chr11:91083661:A:G	rs10830641	A	G	A	Sox3.mouse_HMG_3	14	1	+	1.3048521984332258	-5.077093967993685	GATTAAAGGCATTCAGT
chr11	91188745	91188746	chr11:91188746:C:G	rs11019315	C	G	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr11	91676615	91676616	chr11:91676616:T:C	rs12418246	T	C	C	Sox3.mouse_HMG_3	6	1	+	-0.33121713816995046	-6.939167779710747	GGTGCATGGAAGTCAAG
chr11	91749749	91749750	chr11:91749750:C:T	rs2568725	C	T	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr11	92053427	92053428	chr11:92053428:T:C	rs10501770	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr11	92124095	92124096	chr11:92124096:G:A	rs4753392	G	A	G	Sox3.mouse_HMG_3	12	1	-	5.411214966640073	11.604068534040842	GATGAATTTTAACCATA
chr11	92738457	92738458	chr11:92738458:G:T	rs2852401	G	T	G	Sox3.mouse_HMG_3	16	1	+	2.3684199493716465	1.181490433166625	TGTGATTTGTAATCATG
chr11	92738467	92738468	chr11:92738468:T:A	rs185727159	T	A	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr11	92738468	92738469	chr11:92738469:C:T	rs570431790	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr11	93051341	93051342	chr11:93051342:C:T	rs75750594	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr11	93280364	93280365	chr11:93280365:C:T	rs57235767	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr11	93652466	93652467	chr11:93652467:G:A	rs16919124	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr11	93920081	93920082	chr11:93920082:G:T	rs9888156	G	T	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr11	93984385	93984386	chr11:93984386:G:A	rs75108039	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr11	94536646	94536647	chr11:94536647:A:G	rs2508782	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr11	94573835	94573836	chr11:94573836:G:A	rs1939139	G	A	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr11	94897469	94897470	chr11:94897470:C:G	rs782159331	C	G	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr11	94897470	94897471	chr11:94897471:A:C	rs141940459	A	C	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr11	94938637	94938638	chr11:94938638:A:G	rs7950995	A	G	A	Sox3.mouse_HMG_3	2	1	-	0.7703802415095526	-5.8354988767213785	TCTGATTGTTCTTCATG
chr11	94938638	94938639	chr11:94938639:G:A	rs142628951	G	A	G	Sox3.mouse_HMG_3	1	1	-	0.7703802415095526	1.9771629471763517	TCTGATTGTTCTTCATG
chr11	95076333	95076334	chr11:95076334:A:G	rs76788624	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr11	95254654	95254655	chr11:95254655:G:C	chr11:95254655:G:C	G	C	G	Sox3.mouse_HMG_3	16	1	+	3.357781857081304	1.303925601404003	GATGATTTGCATCCAAG
chr11	95337240	95337241	chr11:95337241:T:C	rs76032691	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr11	95416103	95416104	chr11:95416104:C:T	rs4753674	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr11	95521220	95521221	chr11:95521221:A:G	rs7119870	A	G	G	Sox3.mouse_HMG_3	6	1	-	1.4531461049480108	-5.154804536592787	AAGGAATGTCATGCAGA
chr11	95521223	95521224	chr11:95521224:C:T	rs7104145	C	T	T	Sox3.mouse_HMG_3	3	1	-	1.4531461049480108	-4.32841878258122	AAGGAATGTCATGCAGA
chr11	95557356	95557357	chr11:95557357:T:C	rs11606101	T	C	T	Sox3.mouse_HMG_3	14	1	-	0.5290784210983349	-5.8528677453285765	GCTGAAAGCTATCCATT
chr11	95795726	95795727	chr11:95795727:G:T	rs12271427	G	T	g	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr11	95832883	95832884	chr11:95832884:G:A	rs16922613	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr11	95863708	95863709	chr11:95863709:C:T	rs473155	C	T	C	Sox3.mouse_HMG_3	1	1	-	3.1704761772462797	6.270606113683573	TGAGAATGACATTCCTG
chr11	96001139	96001140	chr11:96001140:G:A	rs140738004	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr11	96056222	96056223	chr11:96056223:T:G	rs1940156	T	G	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr11	96063884	96063885	chr11:96063885:G:A	rs7949201	G	A	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr11	96076240	96076241	chr11:96076241:A:G	rs112232052	A	G	A	Sox3.mouse_HMG_3	10	1	+	3.7172152202521085	-2.8907354212886895	CATGTATTGTATGCATG
chr11	96114479	96114480	chr11:96114480:T:G	rs147572994	T	G	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr11	96320301	96320302	chr11:96320302:T:A	rs112104971	T	A	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr11	96325080	96325081	chr11:96325081:C:T	rs4753195	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr11	96456274	96456275	chr11:96456275:G:C	rs112386333	G	C	G	Sox3.mouse_HMG_3	8	1	-	2.8096341244039102	3.252416793081842	TGTTAATGCCAGTCAGT
chr11	96701203	96701204	chr11:96701204:G:C	rs79042830	G	C	G	Sox3.mouse_HMG_3	13	1	-	0.7563117388419178	-5.850948871620103	TCTGAATCGCAGTCTTG
chr11	96949948	96949949	chr11:96949949:G:T	rs502656	G	T	g	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr11	97345355	97345356	chr11:97345356:T:A	rs7927318	T	A	T	Sox3.mouse_HMG_3	15	1	-	3.8416029927113673	6.105412456948188	GATCAATGGCATGCAAA
chr11	97345451	97345452	chr11:97345452:A:T	rs7952238	A	T	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr11	97796971	97796972	chr11:97796972:T:C	rs12577257	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr11	98051320	98051321	chr11:98051321:C:T	rs482657	C	T	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr11	98496281	98496282	chr11:98496282:T:C	rs10790091	T	C	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr11	98679127	98679128	chr11:98679128:C:T	rs10892136	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr11	99128427	99128428	chr11:99128428:C:A	rs117323078	C	A	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr11	99171897	99171898	chr11:99171898:G:A	rs4143857	G	A	G	Sox3.mouse_HMG_3	3	1	+	3.1645917747054817	-2.616973112823751	CGCGAATTTCATTCAGG
chr11	99318363	99318364	chr11:99318364:G:A	rs78387650	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	99326234	99326235	chr11:99326235:A:G	rs72983722	A	G	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr11	99773795	99773796	chr11:99773796:A:G	chr11:99773796:A:G	A	G	A	Sox3.mouse_HMG_3	7	1	-	2.20720592905554	-3.1962052509217784	CTTGAATTCCAGCCAAT
chr11	99974559	99974560	chr11:99974560:A:T	rs11222118	A	T	A	Sox3.mouse_HMG_3	8	1	+	1.745793118819305	1.6640073524030803	CATGAAGGATATTCTTC
chr11	99974568	99974569	chr11:99974569:T:C	rs7125323	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr11	100296574	100296575	chr11:100296575:C:G	rs1944177	C	G	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr11	100302761	100302762	chr11:100302762:C:A	rs593499	C	A	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr11	100515543	100515544	chr11:100515544:T:C	rs12289202	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr11	100566690	100566691	chr11:100566691:A:G	rs1216577	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr11	100575549	100575550	chr11:100575550:C:A	rs11224292	C	A	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr11	100641160	100641161	chr11:100641161:T:C	rs916482	T	C	C	Sox3.mouse_HMG_3	8	1	+	2.970302638296837	3.232422383212943	GATGAATATTCTTCAAA
chr11	100689261	100689262	chr11:100689262:C:T	rs6590808	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr11	100772230	100772231	chr11:100772231:A:G	rs61890765	A	G	G	Sox3.mouse_HMG_3	7	1	-	1.6126250737956576	-3.790786106181661	GCTGAAATTCATTCAGC
chr11	100776204	100776205	chr11:100776205:C:T	rs507695	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr11	100817107	100817108	chr11:100817108:G:C	rs10895017	G	C	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr11	100851321	100851322	chr11:100851322:T:C	rs11604197	T	C	T	Sox3.mouse_HMG_3	15	1	+	2.3352633152785187	-2.3791300964365494	GGTGCATGCCATTTATA
chr11	100890487	100890488	chr11:100890488:A:T	rs10791431	A	T	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr11	100928550	100928551	chr11:100928551:C:A	rs2155793	C	A	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr11	101510241	101510242	chr11:101510242:A:G	rs7109127	A	G	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr11	101555807	101555808	chr11:101555808:G:C	rs11224853	G	C	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr11	101676991	101676992	chr11:101676992:T:C	rs1938859	T	C	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr11	101715572	101715573	chr11:101715573:A:C	rs78115389	A	C	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr11	101715657	101715658	chr11:101715658:G:C	rs11224984	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr11	101766474	101766475	chr11:101766475:T:C	rs734953	T	C	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr11	102007334	102007335	chr11:102007335:A:G	rs11225103	A	G	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr11	102053932	102053933	chr11:102053933:A:G	rs111682512	A	G	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr11	102502665	102502666	chr11:102502666:G:T	rs1620999	G	T	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr11	102632605	102632606	chr11:102632606:C:T	rs10895327	C	T	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr11	102798580	102798581	chr11:102798581:A:T	rs475007	A	T	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr11	102802458	102802459	chr11:102802459:G:T	rs139267074	G	T	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr11	102843896	102843897	chr11:102843897:A:G	rs3025091	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr11	102844316	102844317	chr11:102844317:T:C	rs522616	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr11	103254243	103254244	chr11:103254244:T:C	rs1346882	T	C	C	Sox3.mouse_HMG_3	5	1	-	2.481619409607887	-4.007215512462977	TTTGAATGATTGTCACA
chr11	103343159	103343160	chr11:103343160:T:C	rs61896780	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr11	103343165	103343166	chr11:103343166:G:A	rs61896781	G	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr11	103497371	103497372	chr11:103497372:G:A	rs10895443	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr11	103541004	103541005	chr11:103541005:C:T	rs1557478	C	T	C	Sox3.mouse_HMG_3	7	1	-	1.7834790583106346	-4.770069656347093	AATGAAAGTCACTCAGG
chr11	103541011	103541012	chr11:103541012:T:G	rs11225866	T	G	G	Sox3.mouse_HMG_3	0	1	-	1.7834790583106346	0.88497146032036	AATGAAAGTCACTCAGG
chr11	103609560	103609561	chr11:103609561:A:G	rs77934172	A	G	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr11	103696410	103696411	chr11:103696411:G:A	rs12282209	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr11	103904004	103904005	chr11:103904005:T:G	rs75488562	T	G	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr11	103997246	103997247	chr11:103997247:G:C	rs2129741	G	C	G	Sox3.mouse_HMG_3	16	1	+	1.9655516335279068	-0.08830462214939394	AATGATGGGCATTCAGG
chr11	104000675	104000676	chr11:104000676:A:C	rs12146566	A	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr11	104001784	104001785	chr11:104001785:C:T	rs7927365	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr11	104059927	104059928	chr11:104059928:A:G	rs361254	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	104121367	104121368	chr11:104121368:T:C	rs361295	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	104136880	104136881	chr11:104136881:T:C	rs17102060	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr11	104155454	104155455	chr11:104155455:T:C	rs7126071	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr11	104371539	104371540	chr11:104371540:A:G	rs1488958	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr11	104392376	104392377	chr11:104392377:T:C	rs12361853	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr11	104485045	104485046	chr11:104485046:A:G	rs75994262	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr11	104700304	104700305	chr11:104700305:C:A	rs4584548	C	A	C	Sox3.mouse_HMG_3	9	1	+	5.3136369426729475	-0.7405816818353699	AATGAATGGCCTTCTTG
chr11	104707385	104707386	chr11:104707386:G:A	rs1200613	G	A	A	Sox3.mouse_HMG_3	8	1	+	1.7007771531553904	1.0776605059775772	TCTGAAAGGTATTCCTG
chr11	104824272	104824273	chr11:104824273:T:C	rs6591100	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr11	104971274	104971275	chr11:104971275:A:G	rs57760571	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr11	105033256	105033257	chr11:105033257:A:C	rs570685	A	C	.	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr11	105181240	105181241	chr11:105181241:C:T	rs897145734	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr11	105371643	105371644	chr11:105371644:A:G	rs61891502	A	G	A	Sox3.mouse_HMG_3	16	1	+	3.011616299902763	3.0475567563552888	CATGACTTCTGTTCATA
chr11	105466714	105466715	chr11:105466715:T:C	rs796241706	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr11	105466721	105466722	chr11:105466722:T:A	rs73633686	T	A	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr11	105653506	105653507	chr11:105653507:A:G	rs7114305	A	G	G	Sox3.mouse_HMG_3	1	1	+	3.4438551005245444	0.3437251640872526	TAAGAATGGCATGCAAT
chr11	105698629	105698630	chr11:105698630:A:G	rs10791767	A	G	A	Sox3.mouse_HMG_3	9	1	-	3.046968531053415	3.039331854061669	GATGGATTATATACAAG
chr11	105799996	105799997	chr11:105799997:G:T	rs7129285	G	T	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr11	106368515	106368516	chr11:106368516:T:A	rs636907	T	A	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr11	106398315	106398316	chr11:106398316:C:T	rs7113815	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr11	106495045	106495046	chr11:106495046:G:A	rs77205104	G	A	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr11	106746097	106746098	chr11:106746098:G:C	rs112093494	G	C	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr11	107665031	107665032	chr11:107665032:G:A	rs647756	G	A	G	Sox3.mouse_HMG_3	16	1	-	2.2620796986231295	3.1290064380954083	TATGAAATTCATGCATC
chr11	107783693	107783694	chr11:107783694:A:C	rs71488272	A	C	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	107785445	107785446	chr11:107785446:G:A	rs55635753	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr11	107985823	107985824	chr11:107985824:G:A	rs12295170	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr11	108020074	108020075	chr11:108020075:C:T	rs3858391	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr11	108224492	108224493	chr11:108224493:A:G	rs625120	A	G	A	Sox3.mouse_HMG_3	11	1	-	4.465831431148221	-1.618779394953724	GATGAACTTCATTTATA
chr11	108236932	108236933	chr11:108236933:G:A	rs228599	G	A	a	Sox3.mouse_HMG_3	16	1	+	0.49829693922748697	0.46235648277496133	GATGATTTTAAGTCAGG
chr11	108428124	108428125	chr11:108428125:A:G	rs61913875	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr11	108566309	108566310	chr11:108566310:A:G	rs55645834	A	G	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr11	108587351	108587352	chr11:108587352:T:A	rs75838568	T	A	T	Sox3.mouse_HMG_3	5	1	-	4.130503969365045	-2.4769366951136655	GGTGAAGGTTAGTCAGA
chr11	108664619	108664620	chr11:108664620:G:A	rs77953232	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr11	108756856	108756857	chr11:108756857:A:G	rs138261853	A	G	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr11	109039513	109039514	chr11:109039514:T:C	rs10890936	T	C	C	Sox3.mouse_HMG_3	2	1	+	4.6537092774754525	-1.9521698407554782	AATGGATGACCTTCATA
chr11	109794366	109794367	chr11:109794367:T:C	rs2716023	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr11	109915411	109915412	chr11:109915412:T:G	rs137892618	T	G	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr11	109985123	109985124	chr11:109985124:G:C	rs73547106	G	C	G	Sox3.mouse_HMG_3	11	1	+	3.325656742465757	-1.3245179833403824	TATCATTTGCAGTCATA
chr11	110068768	110068769	chr11:110068769:A:T	rs7932082	A	T	A	Sox3.mouse_HMG_3	12	1	-	6.659216023040531	0.5464051633132994	TATGAAGTGTATTCACA
chr11	110077116	110077117	chr11:110077117:T:A	rs12291126	T	A	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr11	110094573	110094574	chr11:110094574:A:G	rs74840329	A	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr11	110564570	110564571	chr11:110564571:A:G	rs10891144	A	G	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr11	110564594	110564595	chr11:110564595:A:G	rs11213479	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr11	110675655	110675656	chr11:110675656:C:T	rs59602437	C	T	-	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr11	110710140	110710141	chr11:110710141:G:A	rs7927119	G	A	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr11	110761102	110761103	chr11:110761103:A:G	rs10488724	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr11	111051021	111051022	chr11:111051022:G:T	rs111849446	G	T	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr11	111226217	111226218	chr11:111226218:C:T	rs7120599	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr11	111281156	111281157	chr11:111281157:C:T	rs7121501	C	T	C	Sox3.mouse_HMG_3	3	1	-	2.6744684545296726	-3.1070964329995583	GATGAAATGTAGTAATT
chr11	111398709	111398710	chr11:111398710:T:C	rs1123066	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr11	111565661	111565662	chr11:111565662:A:G	rs1944119	A	G	G	Sox3.mouse_HMG_3	10	1	+	6.500196508336403	-0.10775413320439386	GTTGAATTTCATCCATC
chr11	111633955	111633956	chr11:111633956:A:G	rs572721334	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr11	112220670	112220671	chr11:112220671:T:C	rs2518345	T	C	T	Sox3.mouse_HMG_3	15	1	+	2.5574603368001876	-2.156933074914881	AATGAAGTTCAGACATA
chr11	112266022	112266023	chr11:112266023:A:G	rs117104262	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr11	112274231	112274232	chr11:112274232:G:C	rs74894927	G	C	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr11	112306599	112306600	chr11:112306600:T:C	rs901410340	T	C	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr11	112394302	112394303	chr11:112394303:G:T	rs7939456	G	T	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr11	112590999	112591000	chr11:112591000:C:T	rs73004247	C	T	C	Sox3.mouse_HMG_3	6	1	-	1.1789196805330253	1.1789196805330253	GAGGAAGGGCAGTCAGA
chr11	112591112	112591113	chr11:112591113:G:T	rs2000919	G	T	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr11	112611383	112611384	chr11:112611384:T:C	rs4472967	T	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	112665180	112665181	chr11:112665181:C:T	rs2884889	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr11	112770807	112770808	chr11:112770808:C:T	rs10891431	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr11	112801937	112801938	chr11:112801938:G:A	rs591568	G	A	G	Sox3.mouse_HMG_3	13	1	-	1.3864969860261385	-5.2207636244358815	GGTGCACGGTAGTCATG
chr11	112855174	112855175	chr11:112855175:G:C	rs1511918	G	C	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr11	112878471	112878472	chr11:112878472:C:T	rs190030739	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr11	112907694	112907695	chr11:112907695:T:C	rs1447480	T	C	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr11	112964040	112964041	chr11:112964041:T:A	rs57715877	T	A	-	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr11	113327962	113327963	chr11:113327963:C:G	rs45627831	C	G	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr11	113409551	113409552	chr11:113409552:G:C	rs2734842	G	C	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr11	113841555	113841556	chr11:113841556:G:T	rs2513577	G	T	T	Sox3.mouse_HMG_3	7	1	+	2.0885965201932155	1.2385635779631439	AAGAAATGTCATTCAGG
chr11	113841569	113841570	chr11:113841570:T:C	rs140896766	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr11	113896256	113896257	chr11:113896257:T:C	rs78417016	T	C	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr11	114161322	114161323	chr11:114161323:A:G	rs150805886	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr11	114262614	114262615	chr11:114262615:A:G	rs17116773	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr11	114354343	114354344	chr11:114354344:A:G	rs115034568	A	G	A	Sox3.mouse_HMG_3	0	1	+	0.8876125902950842	1.712896491441428	AGTGATTGGCAGGCATA
chr11	114832160	114832161	chr11:114832161:T:C	rs944473492	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr11	115073362	115073363	chr11:115073363:C:T	rs2513678	C	T	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr11	115169419	115169420	chr11:115169420:G:C	rs17118020	G	C	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr11	115194171	115194172	chr11:115194172:C:G	rs1170043416	C	G	C	Sox3.mouse_HMG_3	8	1	-	4.2264282708939005	3.7836456022159686	TAACAATGGCATTCAAA
chr11	115222521	115222522	chr11:115222522:C:A	rs73572149	C	A	C	Sox3.mouse_HMG_3	16	1	-	1.3446387214025475	0.15770920519752563	AGTGAAAATTATTCATG
chr11	115592549	115592550	chr11:115592550:T:C	rs2515331	T	C	-	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr11	115920899	115920900	chr11:115920900:T:A	rs1145179	T	A	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr11	115981193	115981194	chr11:115981194:A:G	rs77730455	A	G	A	Sox3.mouse_HMG_3	2	1	-	2.0897871334129254	-4.516091984818005	AATGTATTGTATTTAAA
chr11	116098271	116098272	chr11:116098272:T:C	rs11826705	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr11	116134752	116134753	chr11:116134753:T:C	rs6589531	T	C	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr11	116173783	116173784	chr11:116173784:T:G	rs149097466	T	G	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr11	116356541	116356542	chr11:116356542:G:A	rs497898	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr11	116533187	116533188	chr11:116533188:A:G	rs7925845	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr11	116634865	116634866	chr11:116634866:T:C	rs1784108	T	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr11	116733353	116733354	chr11:116733354:T:C	rs180353	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr11	116810846	116810847	chr11:116810847:G:A	rs6589572	G	A	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr11	116851109	116851110	chr11:116851110:C:T	rs10047459	C	T	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr11	116857543	116857544	chr11:116857544:C:T	rs75385236	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr11	116862555	116862556	chr11:116862556:G:A	rs112352791	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	116879909	116879910	chr11:116879910:G:A	rs116724830	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr11	117000752	117000753	chr11:117000753:C:T	rs76901578	C	T	C	Sox3.mouse_HMG_3	8	1	-	4.487654983671733	3.8645383364939203	TAAGAAATGCATTCATT
chr11	117180201	117180202	chr11:117180202:C:T	rs12419178	C	T	C	Sox3.mouse_HMG_3	1	1	-	1.5225530284782025	4.622682964915495	AGTAAACGGCAGTCATG
chr11	117199974	117199975	chr11:117199975:G:A	rs526602	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr11	117217365	117217366	chr11:117217366:C:T	rs2238005	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr11	117478685	117478686	chr11:117478686:A:G	rs56057635	A	G	A	Sox3.mouse_HMG_3	1	1	+	3.897979876198198	0.7978499397609053	CATGAATTGCATCTATG
chr11	117604129	117604130	chr11:117604130:G:A	rs61697909	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr11	117625416	117625417	chr11:117625417:T:C	rs10790195	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	117818667	117818668	chr11:117818668:C:T	rs73018459	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr11	118022802	118022803	chr11:118022803:G:T	rs73013721	G	T	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr11	118251273	118251274	chr11:118251274:C:A	rs76935442	C	A	C	Sox3.mouse_HMG_3	1	1	-	2.3953192096678757	2.525372337916073	GGTGACTAATATTCATG
chr11	118344458	118344459	chr11:118344459:G:A	rs181713283	G	A	G	Sox3.mouse_HMG_3	13	1	-	2.1792293321121683	-4.428031278349851	GAAGAATGATAGCCAGG
chr11	118353407	118353408	chr11:118353408:G:A	rs73018291	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	118537755	118537756	chr11:118537756:C:T	rs73022038	C	T	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr11	118591651	118591652	chr11:118591652:A:G	rs11216919	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr11	118821265	118821266	chr11:118821266:T:A	rs77731159	T	A	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr11	118852669	118852670	chr11:118852670:G:A	rs7103067	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr11	119091299	119091300	chr11:119091300:C:G	rs150524167	C	G	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr11	119351995	119351996	chr11:119351996:G:A	rs7122785	G	A	G	Sox3.mouse_HMG_3	1	1	+	1.4878967739455278	4.588026710382822	TGTGAATGTTAGTCTCT
chr11	119367215	119367216	chr11:119367216:A:G	rs534064676	A	G	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr11	119703349	119703350	chr11:119703350:G:C	rs6589769	G	C	G	Sox3.mouse_HMG_3	0	1	+	0.8579526423523922	-0.8658388567842266	GATAAATGTCTTTCAGC
chr11	119708607	119708608	chr11:119708608:G:C	rs76544892	G	C	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr11	119802118	119802119	chr11:119802119:G:C	rs80316638	G	C	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr11	119899531	119899532	chr11:119899532:T:C	rs117040360	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr11	120010816	120010817	chr11:120010817:A:G	rs1893394	A	G	G	Sox3.mouse_HMG_3	1	1	+	7.6059382267582425	4.505808290320952	TATGAATGTCATTAAGT
chr11	120177709	120177710	chr11:120177710:C:T	rs17123714	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr11	120200799	120200800	chr11:120200800:G:A	rs11217762	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr11	120236403	120236404	chr11:120236404:G:A	rs1316281	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr11	120240065	120240066	chr11:120240066:T:C	rs10892553	T	C	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr11	120362701	120362702	chr11:120362702:C:T	rs115635739	C	T	C	Sox3.mouse_HMG_3	3	1	-	4.43064688723859	-1.350918000290643	AACGAAAGACATTCATA
chr11	120750892	120750893	chr11:120750893:G:A	rs1945011	G	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr11	120806688	120806689	chr11:120806689:T:C	rs948034	T	C	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr11	120904039	120904040	chr11:120904040:T:C	rs59711149	T	C	T	Sox3.mouse_HMG_3	6	1	+	0.9146633706474926	-5.693287270893304	TGTGATTGCCCTTCATT
chr11	121018835	121018836	chr11:121018836:T:C	rs10400347	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr11	121025454	121025455	chr11:121025455:A:C	rs550244344	A	C	A	Sox3.mouse_HMG_3	16	1	+	1.1564354557168455	-0.8614803435079297	TATGTCTTACATTCAGA
chr11	121025455	121025456	chr11:121025456:T:C	chr11:121025456:T:C	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr11	121039240	121039241	chr11:121039241:T:C	rs114233370	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr11	121105718	121105719	chr11:121105719:A:G	rs504626	A	G	G	Sox3.mouse_HMG_3	6	1	-	7.127681131637196	0.5197304900963995	GCTGAATGCAAGTCATA
chr11	121135588	121135589	chr11:121135589:G:C	rs678275	G	C	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr11	121452767	121452768	chr11:121452768:G:C	rs578506	G	C	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr11	121679740	121679741	chr11:121679741:T:C	rs80180985	T	C	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr11	121721836	121721837	chr11:121721837:C:A	rs4450182	C	A	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr11	121763338	121763339	chr11:121763339:A:C	rs1944690	A	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr11	121873660	121873661	chr11:121873661:G:C	rs1219406	G	C	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr11	121915341	121915342	chr11:121915342:G:A	rs10790476	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr11	121932805	121932806	chr11:121932806:T:A	rs1219444	T	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr11	122069702	122069703	chr11:122069703:A:G	rs549798	A	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr11	122099560	122099561	chr11:122099561:C:T	rs643925	C	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	122190660	122190661	chr11:122190661:C:T	rs61909866	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	122404516	122404517	chr11:122404517:G:C	rs492127	G	C	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr11	122593961	122593962	chr11:122593962:G:A	rs1996354	G	A	G	Sox3.mouse_HMG_3	12	1	+	2.2352414635864193	2.503505450181099	AATGAATGACAAGCAGG
chr11	122593964	122593965	chr11:122593965:G:C	rs1878336	G	C	G	Sox3.mouse_HMG_3	15	1	+	2.2352414635864193	0.6434388629645924	AATGAATGACAAGCAGG
chr11	122733515	122733516	chr11:122733516:A:G	rs116754591	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr11	122733517	122733518	chr11:122733518:A:G	rs114609195	A	G	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr11	122740151	122740152	chr11:122740152:G:A	rs1894087	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr11	122848025	122848026	chr11:122848026:G:A	rs73602749	G	A	G	Sox3.mouse_HMG_3	3	1	+	5.094842031192971	-0.6867228563362614	CTGGAATTTTATTCATT
chr11	122880399	122880400	chr11:122880400:C:T	rs3134404	C	T	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr11	123084236	123084237	chr11:123084237:A:G	rs11218962	A	G	A	Sox3.mouse_HMG_3	16	1	+	5.431218948528185	5.467159404980711	AATGAATTTGAATCATA
chr11	123126108	123126109	chr11:123126109:G:A	rs76000277	G	A	g	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr11	123156874	123156875	chr11:123156875:T:G	rs10400282	T	G	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr11	123194010	123194011	chr11:123194011:C:T	rs112538727	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr11	123194057	123194058	chr11:123194058:T:C	rs7942068	T	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	123286425	123286426	chr11:123286426:T:C	rs10892996	T	C	T	Sox3.mouse_HMG_3	5	1	-	2.496018148896419	-3.9928167731744457	AATGAAGGGTACTCAGG
chr11	123307731	123307732	chr11:123307732:C:T	rs76968238	C	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr11	123401037	123401038	chr11:123401038:T:C	rs7946337	T	C	T	Sox3.mouse_HMG_3	15	1	-	2.1696093462453048	1.3108279993888843	TATAAATTGCTTTCAAT
chr11	123488165	123488166	chr11:123488166:A:C	rs2846321	A	C	A	Sox3.mouse_HMG_3	10	1	+	2.5626038041375265	-4.188447681043944	CACTAATTACATTCATG
chr11	123512813	123512814	chr11:123512814:C:T	rs12577152	C	T	T	Sox3.mouse_HMG_3	3	1	-	2.16886911879992	-3.6126957687293126	CCTGAAGTCCATTCAGA
chr11	123651896	123651897	chr11:123651897:G:C	rs73031649	G	C	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	124255812	124255813	chr11:124255813:C:T	rs78811786	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr11	124623514	124623515	chr11:124623515:G:A	rs679079	G	A	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr11	124764212	124764213	chr11:124764213:T:G	rs12280649	T	G	T	Sox3.mouse_HMG_3	6	1	+	5.252841236970223	-1.498210248211247	AATGATTTGTAGTCAGT
chr11	124848905	124848906	chr11:124848906:A:G	rs11219806	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr11	124880335	124880336	chr11:124880336:C:T	rs4366494	C	T	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr11	125061437	125061438	chr11:125061438:G:A	rs4078355	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr11	125155018	125155019	chr11:125155019:C:T	rs12789521	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr11	125364319	125364320	chr11:125364320:C:T	rs148592271	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr11	125457075	125457076	chr11:125457076:G:T	rs36143594	G	T	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr11	125483384	125483385	chr11:125483385:C:T	rs485680	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr11	126184907	126184908	chr11:126184908:G:C	rs12416975	G	C	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr11	126216872	126216873	chr11:126216873:T:C	rs633607	T	C	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr11	126411001	126411002	chr11:126411002:C:T	rs571255985	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr11	126542447	126542448	chr11:126542448:C:T	rs527629	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr11	126548783	126548784	chr11:126548784:T:C	rs75243969	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr11	126548822	126548823	chr11:126548823:C:T	rs113982080	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr11	126549244	126549245	chr11:126549245:A:C	rs61901060	A	C	A	Sox3.mouse_HMG_3	12	1	-	5.6136992880002845	-0.7673755583216255	GTTTAATGACATTCAGA
chr11	126556821	126556822	chr11:126556822:A:T	rs67508732	A	T	T	Sox3.mouse_HMG_3	15	1	-	3.9041011138798742	1.6402916496430535	TATGATTGTTATTTATT
chr11	126573941	126573942	chr11:126573942:T:C	rs11220543	T	C	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr11	126739191	126739192	chr11:126739192:G:A	rs1106419	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr11	126748103	126748104	chr11:126748104:C:T	rs73018556	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr11	126748141	126748142	chr11:126748142:C:T	rs1032423642	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr11	126748142	126748143	chr11:126748143:G:C	rs9326284	G	C	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr11	126930282	126930283	chr11:126930283:A:C	chr11:126930283:A:C	A	C	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr11	126988224	126988225	chr11:126988225:A:T	rs635453	A	T	T	Sox3.mouse_HMG_3	13	1	+	2.589241938115749	2.364618001631105	GATGAATTCTTTTAAAG
chr11	127014084	127014085	chr11:127014085:A:G	rs1287145	A	G	G	Sox3.mouse_HMG_3	10	1	+	2.468056361272481	-4.139894280268316	AATGAATTTCAGTGGTG
chr11	127056577	127056578	chr11:127056578:A:G	rs478890	A	G	A	Sox3.mouse_HMG_3	9	1	-	1.9065674983707614	1.8989308213790155	ACTGAATTCTAGCCAAT
chr11	127588678	127588679	chr11:127588679:T:C	rs56352669	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr11	127807048	127807049	chr11:127807049:A:T	rs11221059	A	T	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr11	127807058	127807059	chr11:127807059:A:G	rs73016456	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr11	127862738	127862739	chr11:127862739:A:T	rs4936025	A	T	A	Sox3.mouse_HMG_3	3	1	+	3.2172988452936253	2.092369248308142	TTTAAATGATATTAATA
chr11	127875377	127875378	chr11:127875378:G:A	rs11221094	G	A	G	Sox3.mouse_HMG_3	8	1	+	2.9075598588221903	2.284443211644377	TTTGAAAGGTATTCTTG
chr11	127875399	127875400	chr11:127875400:G:T	rs11221095	G	T	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr11	128031678	128031679	chr11:128031679:G:T	rs78456095	G	T	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr11	128031685	128031686	chr11:128031686:A:T	rs146093749	A	T	A	Sox3.mouse_HMG_3	5	1	+	3.8186389224950257	-2.7888017419836846	ACTGAATTGCAGACATC
chr11	128031714	128031715	chr11:128031715:G:A	chr11:128031715:G:A	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr11	128031715	128031716	chr11:128031716:C:A	rs988168747	C	A	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr11	128053041	128053042	chr11:128053042:G:A	rs11221140	G	A	G	Sox3.mouse_HMG_3	12	1	+	1.999863439497594	2.268127426092274	GTTAAATGTCAGGCATG
chr11	128210629	128210630	chr11:128210630:A:G	rs78421285	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr11	128210665	128210666	chr11:128210666:G:A	rs747163	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr11	128286418	128286419	chr11:128286419:A:G	rs12795702	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr11	128354738	128354739	chr11:128354739:T:C	rs10450612	T	C	T	Sox3.mouse_HMG_3	1	1	+	1.0281658678237717	-0.17861683784303017	GTTGAATTGCAGTGGTG
chr11	128406015	128406016	chr11:128406016:G:T	rs75294966	G	T	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr11	128469910	128469911	chr11:128469911:G:T	rs7101705	G	T	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr11	128491749	128491750	chr11:128491750:T:C	rs535274593	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr11	128712661	128712662	chr11:128712662:T:C	rs665440	T	C	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr11	128754915	128754916	chr11:128754916:A:G	rs2155135	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr11	128874856	128874857	chr11:128874857:G:A	rs11603786	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr11	129041537	129041538	chr11:129041538:A:C	rs2155177	A	C	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr11	129281253	129281254	chr11:129281254:G:A	rs4077030	G	A	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr11	129421733	129421734	chr11:129421734:C:A	rs2954148	C	A	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr11	129842279	129842280	chr11:129842280:G:A	rs478290	G	A	A	Sox3.mouse_HMG_3	7	1	+	1.8473874491562725	-4.706161265501455	GATGAAAGATATTGAAT
chr11	129992867	129992868	chr11:129992868:C:G	rs147131193	C	G	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr11	130019280	130019281	chr11:130019281:A:G	rs2323880	A	G	A	Sox3.mouse_HMG_3	1	1	-	2.8529052251725333	1.646122519505734	ATTGAATTTCCTTCAAC
chr11	130225062	130225063	chr11:130225063:T:C	rs624885	T	C	C	Sox3.mouse_HMG_3	15	1	+	2.885880309992122	-1.8285131017229466	CAGAAATGTTAGTCATG
chr11	130369330	130369331	chr11:130369331:G:C	rs112743754	G	C	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr11	130442907	130442908	chr11:130442908:G:A	rs903020	G	A	A	Sox3.mouse_HMG_3	9	1	-	2.065741572759687	2.073378249751433	CATGAATTACAGCCCTG
chr11	130452568	130452569	chr11:130452569:G:A	rs11827019	G	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr11	130480027	130480028	chr11:130480028:A:C	rs140206628	A	C	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr11	130780694	130780695	chr11:130780695:T:G	rs10750445	T	G	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr11	130813921	130813922	chr11:130813922:C:T	rs118107415	C	T	C	Sox3.mouse_HMG_3	14	1	+	1.212280653558295	1.212280653558295	TGTGAATGTGATTCCAG
chr11	130882144	130882145	chr11:130882145:A:C	rs876641	A	C	C	Sox3.mouse_HMG_3	4	1	+	2.7731673977319806	-3.977374110387405	CCTGAATTTTTTTCAAA
chr11	130894553	130894554	chr11:130894554:G:T	rs11222379	G	T	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr11	131190220	131190221	chr11:131190221:T:C	rs75197424	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr11	131217891	131217892	chr11:131217892:T:C	rs11222521	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr11	131327535	131327536	chr11:131327536:T:A	rs2511505	T	A	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr11	131455972	131455973	chr11:131455973:T:C	rs10894394	T	C	T	Sox3.mouse_HMG_3	6	1	+	4.857178393219525	-1.7507722483212702	GAGAAATGTTATTCATT
chr11	131522117	131522118	chr11:131522118:A:T	rs388076	A	T	A	Sox3.mouse_HMG_3	2	1	-	0.46369304568700853	-5.263635668652616	GCTGATTAGCAGTCATA
chr11	131522128	131522129	chr11:131522129:C:T	rs414864	C	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr11	131618523	131618524	chr11:131618524:C:T	rs11222717	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr11	131622869	131622870	chr11:131622870:A:C	rs11222720	A	C	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr11	131674246	131674247	chr11:131674247:G:T	rs114555904	G	T	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr11	131674279	131674280	chr11:131674280:G:A	rs181943215	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr11	131833634	131833635	chr11:131833635:T:C	rs1436257	T	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr11	131890387	131890388	chr11:131890388:C:T	rs115426511	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr11	131898228	131898229	chr11:131898229:G:C	rs676025	G	C	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr11	131898571	131898572	chr11:131898572:G:T	rs114105302	G	T	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr11	131908464	131908465	chr11:131908465:C:A	rs522856	C	A	C	Sox3.mouse_HMG_3	7	1	-	0.5886506236834015	-0.26138231854666993	GATAAATGCTAATCCTG
chr11	131967131	131967132	chr11:131967132:G:A	rs35361897	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr11	132077085	132077086	chr11:132077086:A:C	rs1547895	A	C	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr11	132080859	132080860	chr11:132080860:G:A	rs6590614	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr11	132123379	132123380	chr11:132123380:G:A	rs80284468	G	A	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr11	132207022	132207023	chr11:132207023:T:C	rs1975612	T	C	C	Sox3.mouse_HMG_3	6	1	-	2.089223395400958	2.089223395400958	TATGAAAGACATGCAGA
chr11	132743120	132743121	chr11:132743121:T:A	rs117569826	T	A	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr11	132790777	132790778	chr11:132790778:A:C	rs2853044	A	C	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr11	132824798	132824799	chr11:132824799:A:G	rs7104976	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.064877192108718	-5.5430734494320815	GAGGAATGACAATCACA
chr11	132951617	132951618	chr11:132951618:C:A	rs2336590	C	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr11	132992937	132992938	chr11:132992938:C:T	rs555606197	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr11	133063087	133063088	chr11:133063088:A:C	rs11603858	A	C	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr11	133678442	133678443	chr11:133678443:T:A	rs11607924	T	A	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr11	133835210	133835211	chr11:133835211:G:T	rs1302267084	G	T	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr11	133893334	133893335	chr11:133893335:A:C	rs1793681	A	C	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr11	133917049	133917050	chr11:133917050:A:C	rs3802922	A	C	C	Sox3.mouse_HMG_3	1	1	+	5.840387872814407	1.663528358958513	AATGAATGAGATTTATA
chr11	134031540	134031541	chr11:134031541:G:T	rs611976	G	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr11	134035438	134035439	chr11:134035439:T:C	rs687187	T	C	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr11	134037800	134037801	chr11:134037801:A:G	rs112727844	A	G	A	Sox3.mouse_HMG_3	6	1	-	3.555211873708203	-3.052738767832595	GCTGAATGTCAATCACA
chr11	134037812	134037813	chr11:134037813:A:T	rs192023533	A	T	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr11	134252355	134252356	chr11:134252356:C:T	rs570113	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr11	134252401	134252402	chr11:134252402:A:C	rs12278812	A	C	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr11	134253438	134253439	chr11:134253439:T:C	chr11:134253439:T:C	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr11	134253441	134253442	chr11:134253442:G:T	rs114085882	G	T	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr11	134524550	134524551	chr11:134524551:T:C	rs74743777	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr11	134574863	134574864	chr11:134574864:C:T	rs55684306	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr11	134574906	134574907	chr11:134574907:T:C	rs12099351	T	C	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr11	134686685	134686686	chr11:134686686:C:T	rs3737494	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr11	134686727	134686728	chr11:134686728:T:C	rs3737493	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr11	134752055	134752056	chr11:134752056:C:G	rs79964977	C	G	C	Sox3.mouse_HMG_3	0	1	-	2.8362257455369315	1.112434246400313	GCTGCATGACAGTCAAT
chr11	134767486	134767487	chr11:134767487:T:C	rs7102831	T	C	C	Sox3.mouse_HMG_3	14	1	-	3.1033171732427203	-3.2786289931841903	ACTGAAATCCATTCAGG
chr11	134912972	134912973	chr11:134912973:C:T	rs78934032	C	T	C	Sox3.mouse_HMG_3	8	1	+	1.9608166981163275	1.6986969532002212	ACTAAATGCCAATCATG
chr12	49219	49220	chr12:49220:C:A	rs11061693	C	A	.	Sox3.mouse_HMG_3	3	1	-	5.608573103265501	-1.297921381249212	GAAGAATTCCATTGATA
chr12	352640	352641	chr12:352641:A:G	rs715228	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.2541653430541229	-5.353785298486674	CAAGAATGTTAGGCATC
chr12	474556	474557	chr12:474557:T:C	rs10744647	T	C	C	Sox3.mouse_HMG_3	14	1	-	0.04669836472992328	-6.335247801696987	GCTGGATTGCAGGCATG
chr12	484553	484554	chr12:484554:G:A	rs61916618	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr12	607606	607607	chr12:607607:T:C	rs778089362	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr12	646085	646086	chr12:646086:A:G	rs10849390	A	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr12	744061	744062	chr12:744062:G:A	rs11064502	G	A	g	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr12	950114	950115	chr12:950115:A:T	rs11571378	A	T	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr12	1093399	1093400	chr12:1093400:A:G	rs7316905	A	G	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr12	1101717	1101718	chr12:1101718:A:G	rs12316126	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr12	1429936	1429937	chr12:1429937:A:G	rs188928326	A	G	A	Sox3.mouse_HMG_3	1	1	+	3.24468199570726	0.1445520592699674	AATAAATGATTTTCATC
chr12	1535718	1535719	chr12:1535719:A:G	rs2369856	A	G	A	Sox3.mouse_HMG_3	16	1	+	1.1487960545599798	1.1847365110125054	GTTGAGTGCCTGTCATA
chr12	1668105	1668106	chr12:1668106:G:A	rs11612778	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr12	1830085	1830086	chr12:1830086:C:A	rs12301312	C	A	A	Sox3.mouse_HMG_3	13	1	+	8.501720286456843	2.1190836124794648	AACGAATTCTATTCATC
chr12	1946947	1946948	chr12:1946948:G:A	rs1860047	G	A	g	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr12	1974761	1974762	chr12:1974762:G:A	rs10848600	G	A	G	Sox3.mouse_HMG_3	7	1	+	9.195108957213423	2.6415602425556948	GATGCATGTCAGTCATT
chr12	2096272	2096273	chr12:2096273:T:C	rs11062122	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr12	2329474	2329475	chr12:2329475:A:G	rs1544503	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr12	2372553	2372554	chr12:2372554:A:G	rs11837974	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr12	2443901	2443902	chr12:2443902:C:T	rs1860092	C	T	C	Sox3.mouse_HMG_3	9	1	+	0.665233888285059	0.672870565276805	CTAGAAGGGCAGTCATG
chr12	2485385	2485386	chr12:2485386:C:G	rs887000	C	G	G	Sox3.mouse_HMG_3	8	1	-	1.5841414991199345	1.141358830442003	TGGGGATGGCATTCATT
chr12	2492512	2492513	chr12:2492513:C:T	rs2239091	C	T	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr12	2581096	2581097	chr12:2581097:T:C	rs7299658	T	C	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr12	2648204	2648205	chr12:2648205:A:C	rs216036	A	C	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr12	2886021	2886022	chr12:2886022:G:C	rs10735010	G	C	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr12	3166626	3166627	chr12:3166627:A:T	rs73249049	A	T	a	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr12	3230263	3230264	chr12:3230264:C:T	rs3782813	C	T	C	Sox3.mouse_HMG_3	8	1	+	3.2146509438611774	2.9525311989450715	GATGAATGCTTTTGAAG
chr12	3231154	3231155	chr12:3231155:C:T	rs11062585	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr12	3238458	3238459	chr12:3238459:G:A	rs79901044	G	A	G	Sox3.mouse_HMG_3	1	1	+	2.826313708499442	5.926443644936733	CGTGAATGTCATTGAGT
chr12	3650730	3650731	chr12:3650731:G:C	rs17836203	G	C	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr12	3695286	3695287	chr12:3695287:G:T	rs11062765	G	T	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	3729109	3729110	chr12:3729110:G:A	rs241971	G	A	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr12	3731567	3731568	chr12:3731568:G:A	rs241965	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr12	3749907	3749908	chr12:3749908:G:A	rs11062786	G	A	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr12	3950911	3950912	chr12:3950912:C:T	rs554999422	C	T	C	Sox3.mouse_HMG_3	15	1	-	0.9048537307830815	1.763635077639502	GGAGAATGGCATGCAGA
chr12	3971417	3971418	chr12:3971418:G:A	rs115985439	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr12	4000067	4000068	chr12:4000068:T:C	rs4765761	T	C	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr12	4040968	4040969	chr12:4040969:T:C	rs11062980	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr12	4124862	4124863	chr12:4124863:G:A	rs12230013	G	A	A	Sox3.mouse_HMG_3	0	1	+	2.0183556394145223	1.1930717382681792	GCTGATTTCCATTCAGC
chr12	4143324	4143325	chr12:4143325:C:T	rs139016175	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr12	4421656	4421657	chr12:4421657:C:T	rs139059198	C	T	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr12	4518247	4518248	chr12:4518248:C:T	rs35924298	C	T	C	Sox3.mouse_HMG_3	16	1	+	1.1913756054046885	2.0583023448769673	TATGCATGGTCTTCAAC
chr12	4557357	4557358	chr12:4557358:T:C	rs58545752	T	C	T	Sox3.mouse_HMG_3	1	1	-	5.846202436895588	2.7460725004582973	TATGAATAGTAGTCAGC
chr12	4572163	4572164	chr12:4572164:A:G	rs11063240	A	G	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr12	4608387	4608388	chr12:4608388:A:G	rs78395662	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr12	4771597	4771598	chr12:4771598:T:C	rs7976219	T	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr12	4857047	4857048	chr12:4857048:G:A	rs4631963	G	A	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr12	5439134	5439135	chr12:5439135:C:T	rs9888338	C	T	c	Sox3.mouse_HMG_3	0	1	+	2.6825228337799913	4.137393479116857	CGTGAATGTCTTTCAGT
chr12	5487645	5487646	chr12:5487646:T:C	rs4077470	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr12	5502929	5502930	chr12:5502930:T:A	rs11614714	T	A	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr12	5582833	5582834	chr12:5582834:G:A	rs10849298	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.702693997541401	-4.078870889987829	GTAGGATGCTATTCATC
chr12	5648576	5648577	chr12:5648577:G:A	rs147939436	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr12	5648941	5648942	chr12:5648942:T:G	rs141768263	T	G	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr12	5920293	5920294	chr12:5920294:C:T	rs17786442	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr12	5987545	5987546	chr12:5987546:A:G	rs216881	A	G	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr12	6078471	6078472	chr12:6078472:G:A	rs58140598	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr12	6080348	6080349	chr12:6080349:C:A	rs113190143	C	A	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr12	6087133	6087134	chr12:6087134:A:G	rs11064019	A	G	G	Sox3.mouse_HMG_3	15	1	-	2.1322210516332163	-2.582172360081852	CATCAATTGCAGTCCTG
chr12	6087147	6087148	chr12:6087148:T:C	rs11064020	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.1322210516332163	-0.9679088848040756	CATCAATTGCAGTCCTG
chr12	6194082	6194083	chr12:6194083:A:G	rs797771	A	G	A	Sox3.mouse_HMG_3	15	1	-	2.9197270704485243	-1.7946663412665438	AGTGAATGTGATTCCTG
chr12	6231221	6231222	chr12:6231222:T:C	rs2268009	T	C	T	Sox3.mouse_HMG_3	5	1	+	5.057317367098381	5.057317367098381	AATGATTGTTACTCATG
chr12	6286510	6286511	chr12:6286511:C:A	chr12:6286511:C:A	C	A	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr12	6377760	6377761	chr12:6377761:C:T	rs59148182	C	T	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr12	6470128	6470129	chr12:6470129:T:C	rs747813248	T	C	T	Sox3.mouse_HMG_3	10	1	-	1.990542801764361	-4.617407839776436	CAGGAAAGACAGTCATG
chr12	6889206	6889207	chr12:6889207:G:C	rs7955412	G	C	C	Sox3.mouse_HMG_3	1	1	-	1.2407963022665598	2.317525879685162	TCTGAATGCTATTCCCC
chr12	6889248	6889249	chr12:6889249:G:T	rs17790774	G	T	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr12	6944796	6944797	chr12:6944797:C:T	rs73262868	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr12	7099488	7099489	chr12:7099489:T:C	rs11043785	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr12	7109644	7109645	chr12:7109645:C:T	rs3782923	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr12	7201006	7201007	chr12:7201007:A:G	rs10770356	A	G	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr12	7304002	7304003	chr12:7304003:G:A	rs72653462	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr12	7305700	7305701	chr12:7305701:C:T	rs73057731	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	7497899	7497900	chr12:7497900:T:G	rs7358610	T	G	.	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr12	7497913	7497914	chr12:7497914:C:T	rs12315251	C	T	.	Sox3.mouse_HMG_3	8	1	+	3.285437630572427	3.023317885656321	TAGGAGTTCCATTCATT
chr12	7497940	7497941	chr12:7497941:G:T	chr12:7497941:G:T	G	T	.	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr12	7557047	7557048	chr12:7557048:T:C	rs7134972	T	C	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr12	7571841	7571842	chr12:7571842:T:C	rs11054513	T	C	T	Sox3.mouse_HMG_3	12	1	+	4.047351229980645	-2.14550233742012	CTTGAATGCTAGTGATC
chr12	7716679	7716680	chr12:7716680:T:C	rs10772663	T	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr12	7716681	7716682	chr12:7716682:G:A	rs75450787	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr12	7816938	7816939	chr12:7816939:G:T	rs4564403	G	T	-	Sox3.mouse_HMG_3	9	1	-	1.3667085884812142	-4.6875100360271045	GATCACTTGCAGTCAAG
chr12	7989859	7989860	chr12:7989860:T:C	rs7313772	T	C	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr12	7995899	7995900	chr12:7995900:T:G	rs7309151	T	G	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr12	7995945	7995946	chr12:7995946:G:A	rs10772897	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr12	8077564	8077565	chr12:8077565:C:T	rs7132147	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr12	8077571	8077572	chr12:8077572:C:G	rs7132151	C	G	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr12	8235908	8235909	chr12:8235909:C:T	rs55828837	C	T	.	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr12	8238252	8238253	chr12:8238253:G:T	rs11044206	G	T	.	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr12	8449827	8449828	chr12:8449828:T:A	rs11045398	T	A	.	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr12	8578311	8578312	chr12:8578312:T:A	rs16917701	T	A	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr12	8658290	8658291	chr12:8658291:A:G	rs113302897	A	G	a	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr12	8871095	8871096	chr12:8871096:C:A	rs4883193	C	A	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr12	8877215	8877216	chr12:8877216:T:C	rs35800043	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr12	8951129	8951130	chr12:8951130:A:G	rs57343883	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr12	9113680	9113681	chr12:9113681:C:T	rs226382	C	T	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr12	9245004	9245005	chr12:9245005:A:T	rs2377748	A	T	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr12	9379820	9379821	chr12:9379821:T:A	rs7310088	T	A	a	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr12	9605743	9605744	chr12:9605744:G:A	rs988711	G	A	A	Sox3.mouse_HMG_3	9	1	-	4.736618443951891	4.744255120943637	ATTGAATGACAGTAAAA
chr12	9605770	9605771	chr12:9605771:T:C	rs10844161	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr12	9670956	9670957	chr12:9670957:G:A	rs4763738	G	A	A	Sox3.mouse_HMG_3	3	1	+	5.226018315243327	-0.5555465722859043	TATGAATAATGTTCATG
chr12	9706566	9706567	chr12:9706567:G:A	rs921875987	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr12	9725226	9725227	chr12:9725227:G:A	rs7307111	G	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr12	9934211	9934212	chr12:9934212:C:T	rs11610998	C	T	-	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr12	9934212	9934213	chr12:9934213:G:T	rs74737544	G	T	-	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr12	10070186	10070187	chr12:10070187:T:C	rs17734799	T	C	T	Sox3.mouse_HMG_3	10	1	-	5.090843809515293	-1.5171068320255054	CATGATTTCCAGTCAGG
chr12	10096604	10096605	chr12:10096605:C:A	rs11053579	C	A	A	Sox3.mouse_HMG_3	0	1	-	4.659429288365765	4.39050843456601	GTTTAATTCTATTCAAT
chr12	10099050	10099051	chr12:10099051:A:G	rs2306893	A	G	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr12	10140241	10140242	chr12:10140242:G:A	rs74060584	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr12	10140259	10140260	chr12:10140260:A:G	rs7305796	A	G	A	Sox3.mouse_HMG_3	5	1	+	2.355474999060183	-4.133359923010682	AATCTATTTTATTCATT
chr12	10226821	10226822	chr12:10226822:G:A	rs75533238	G	A	G	Sox3.mouse_HMG_3	3	1	+	4.635746458026069	-1.1458184295031648	TGTGAATGGCAGTCTAT
chr12	10331769	10331770	chr12:10331770:T:C	rs2537760	T	C	C	Sox3.mouse_HMG_3	14	1	-	1.7344284827483458	-4.647517683678565	GGCAAATGATAGTCATG
chr12	10331803	10331804	chr12:10331804:C:T	chr12:10331804:C:T	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr12	10501035	10501036	chr12:10501036:C:T	rs11053820	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr12	10512239	10512240	chr12:10512240:G:A	rs73062511	G	A	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr12	11499087	11499088	chr12:11499088:T:C	rs17745082	T	C	T	Sox3.mouse_HMG_3	6	1	+	2.3114276191320124	-4.296523022408784	GATGAATGTCTTTCTGG
chr12	11714935	11714936	chr12:11714936:G:A	rs150041122	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr12	11886616	11886617	chr12:11886617:A:G	rs10772511	A	G	A	Sox3.mouse_HMG_3	1	1	+	0.8573182731047269	-2.2428116633325654	AATGCATCGTAGTCAGA
chr12	11999144	11999145	chr12:11999145:A:G	rs4763748	A	G	A	Sox3.mouse_HMG_3	16	1	-	1.7505281036282527	0.8836013641559739	GCTGCATTGCAGTCAGT
chr12	11999163	11999164	chr12:11999164:G:A	rs4763749	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr12	12008453	12008454	chr12:12008454:T:A	rs948775540	T	A	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr12	12071783	12071784	chr12:12071784:G:A	rs1641716	G	A	G	Sox3.mouse_HMG_3	13	1	-	3.954134762316789	-2.6531258481452307	GCTGAATGCTAGACAGA
chr12	12098776	12098777	chr12:12098777:C:T	rs2448031	C	T	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr12	12098826	12098827	chr12:12098827:C:G	rs1797646	C	G	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr12	12360062	12360063	chr12:12360063:G:A	rs10772555	G	A	G	Sox3.mouse_HMG_3	16	1	+	4.413319038936127	4.377378582483601	AAAGAAGTTCATTCATG
chr12	12408520	12408521	chr12:12408521:C:T	rs2193269	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr12	12505544	12505545	chr12:12505545:C:G	rs4255620	C	G	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr12	12656239	12656240	chr12:12656240:G:T	rs2417220	G	T	G	Sox3.mouse_HMG_3	3	1	+	4.315749424607208	-2.5907450599075057	TATGTATTCCTTTCATA
chr12	12819897	12819898	chr12:12819898:A:G	rs145022535	A	G	A	Sox3.mouse_HMG_3	15	1	+	2.254525345184666	1.3957439983282454	CCTGAATTACATCCAAT
chr12	12966113	12966114	chr12:12966114:C:T	rs1642197	C	T	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr12	13075296	13075297	chr12:13075297:G:A	rs1872627	G	A	A	Sox3.mouse_HMG_3	13	1	-	4.628247411851234	-1.9790131986107857	GATGTAATCTATTCATG
chr12	13081900	13081901	chr12:13081901:G:A	rs923777821	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr12	13181839	13181840	chr12:13181840:G:A	rs78911519	G	A	G	Sox3.mouse_HMG_3	13	1	-	1.5277866583822133	-5.079473952079806	GCTGAATGCTTTGCATG
chr12	13208584	13208585	chr12:13208585:G:A	rs114030007	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	13237118	13237119	chr12:13237119:C:T	rs5012466	C	T	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr12	13377671	13377672	chr12:13377672:A:G	rs12579926	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr12	13431065	13431066	chr12:13431066:G:A	rs4763987	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr12	13472873	13472874	chr12:13472874:C:A	rs77597435	C	A	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	13569378	13569379	chr12:13569379:A:C	rs2270359	A	C	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr12	13588136	13588137	chr12:13588137:G:A	rs1805490	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr12	13741461	13741462	chr12:13741462:G:A	rs10845838	G	A	G	Sox3.mouse_HMG_3	13	1	-	3.4767844612227616	-3.130476149239258	TATGAATTCCAGGCGTA
chr12	13780770	13780771	chr12:13780771:T:C	rs77821355	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr12	13780787	13780788	chr12:13780788:G:T	rs73053663	G	T	G	Sox3.mouse_HMG_3	4	1	+	1.763777982952713	1.539154046468069	AATGGATTCTTTTCAAG
chr12	13817276	13817277	chr12:13817277:G:A	rs76273525	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr12	14235533	14235534	chr12:14235534:G:A	rs4763373	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr12	14255704	14255705	chr12:14255705:C:T	rs73054799	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr12	14371986	14371987	chr12:14371987:A:G	rs7313245	A	G	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr12	14394446	14394447	chr12:14394447:A:G	rs11835861	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr12	14840919	14840920	chr12:14840920:A:G	rs1861698	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr12	14952625	14952626	chr12:14952626:A:T	rs4763407	A	T	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr12	14973068	14973069	chr12:14973069:G:C	rs11056264	G	C	G	Sox3.mouse_HMG_3	14	1	-	1.3719559805492543	1.3719559805492543	GCTGAATGTTGTTCCTA
chr12	15044928	15044929	chr12:15044929:C:T	rs7300930	C	T	T	Sox3.mouse_HMG_3	8	1	-	6.246643850413391	5.623527203235578	AATGAATTGTATTTACA
chr12	15068709	15068710	chr12:15068710:G:A	rs11056323	G	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr12	15093356	15093357	chr12:15093357:T:C	rs12812920	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr12	15186861	15186862	chr12:15186862:A:G	rs571527590	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr12	15196506	15196507	chr12:15196507:C:G	rs10492167	C	G	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr12	15362218	15362219	chr12:15362219:C:T	chr12:15362219:C:T	C	T	C	Sox3.mouse_HMG_3	13	1	+	3.691230370556686	-2.916030239905334	ACTGAAAGTCATTCAGG
chr12	15526185	15526186	chr12:15526186:C:A	rs6488782	C	A	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr12	15534161	15534162	chr12:15534162:G:A	rs7301227	G	A	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr12	15758205	15758206	chr12:15758206:C:T	rs975648093	C	T	c	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr12	15957239	15957240	chr12:15957240:T:A	rs11056740	T	A	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr12	16198676	16198677	chr12:16198677:G:A	rs4598715	G	A	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr12	16282202	16282203	chr12:16282203:T:A	rs16911788	T	A	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr12	16315749	16315750	chr12:16315750:G:A	rs117448209	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr12	16682717	16682718	chr12:16682718:A:T	rs2193144	A	T	A	Sox3.mouse_HMG_3	1	1	+	0.8984857938490693	-2.071591014340026	TATGAATGGGATTAGTG
chr12	16700548	16700549	chr12:16700549:G:A	rs1488073	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr12	17544335	17544336	chr12:17544336:G:A	rs148878331	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr12	18248267	18248268	chr12:18248268:T:C	rs10840993	T	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr12	18415141	18415142	chr12:18415142:T:C	rs7968533	T	C	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr12	18438405	18438406	chr12:18438406:G:C	rs4764404	G	C	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr12	18468946	18468947	chr12:18468947:C:A	chr12:18468947:C:A	C	A	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr12	18551073	18551074	chr12:18551074:A:G	rs12827361	A	G	A	Sox3.mouse_HMG_3	0	1	+	1.7819849087505746	2.607268809896919	AATTAATGGTATTTAGA
chr12	18589483	18589484	chr12:18589484:T:C	rs147008464	T	C	T	Sox3.mouse_HMG_3	12	1	+	2.900235652569719	-3.2926179148310473	TATGAATTCCAGTGACC
chr12	18682945	18682946	chr12:18682946:C:T	rs1487068	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr12	18703773	18703774	chr12:18703774:C:T	rs754785787	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr12	18819669	18819670	chr12:18819670:G:A	rs3962579	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr12	19028299	19028300	chr12:19028300:G:A	rs12303104	G	A	g	Sox3.mouse_HMG_3	14	1	+	4.135618395944838	10.51756456237175	AATGAATTCTGTTCGTA
chr12	19618390	19618391	chr12:19618391:A:G	rs61699271	A	G	a	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr12	19641186	19641187	chr12:19641187:C:T	rs7313438	C	T	c	Sox3.mouse_HMG_3	15	1	-	2.4552184938514623	3.313999840707883	GATGAATGTCATTGCGG
chr12	19669822	19669823	chr12:19669823:A:C	rs12309963	A	C	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr12	19757667	19757668	chr12:19757668:C:T	rs4762932	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr12	19800144	19800145	chr12:19800145:T:C	rs79295901	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr12	19825930	19825931	chr12:19825931:A:G	rs12831504	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr12	19915724	19915725	chr12:19915725:C:T	rs17360846	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr12	19994903	19994904	chr12:19994904:T:C	rs7358636	T	C	T	Sox3.mouse_HMG_3	9	1	+	3.702205827408865	3.694569150417119	GAATAATTATAGTCATA
chr12	20038726	20038727	chr12:20038727:A:G	rs2417817	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr12	20142546	20142547	chr12:20142547:T:C	rs10129015	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr12	20161066	20161067	chr12:20161067:C:G	rs79047779	C	G	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr12	20199186	20199187	chr12:20199187:G:A	rs112286712	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr12	20256257	20256258	chr12:20256258:G:A	rs274975	G	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr12	20385000	20385001	chr12:20385001:C:T	rs10770645	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr12	20439333	20439334	chr12:20439334:G:A	rs73239573	G	A	G	Sox3.mouse_HMG_3	15	1	+	0.8253463719581714	1.684127718814592	GATTTATGACATTCAGT
chr12	20546836	20546837	chr12:20546837:G:A	rs2311	G	A	G	Sox3.mouse_HMG_3	1	1	-	2.6197260045608752	3.8265087102276736	ACTTAATTCCATTCAAT
chr12	20681227	20681228	chr12:20681228:G:A	rs954865	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr12	20681233	20681234	chr12:20681234:G:C	rs7133764	G	C	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr12	20883335	20883336	chr12:20883336:T:G	rs2053097	T	G	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr12	21054411	21054412	chr12:21054412:T:C	rs7312369	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr12	21092445	21092446	chr12:21092446:G:T	rs11045748	G	T	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr12	21477052	21477053	chr12:21477053:T:C	rs917854	T	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr12	21563120	21563121	chr12:21563121:A:C	rs1473422	A	C	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr12	21615006	21615007	chr12:21615007:C:G	rs153941	C	G	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr12	21615040	21615041	chr12:21615041:G:A	rs192210	G	A	g	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr12	21819370	21819371	chr12:21819371:T:C	rs7309274	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr12	22067179	22067180	chr12:22067180:T:C	rs2111352	T	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr12	22285147	22285148	chr12:22285148:G:A	rs3782525	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr12	22834528	22834529	chr12:22834529:A:C	rs2433644	A	C	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr12	22971505	22971506	chr12:22971506:A:T	rs4438093	A	T	A	Sox3.mouse_HMG_3	2	1	-	1.119531864477457	-4.607796849862166	AATGAATGCCATCCTGT
chr12	23055085	23055086	chr12:23055086:C:T	rs17763330	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr12	23524757	23524758	chr12:23524758:T:C	rs11046966	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr12	23584864	23584865	chr12:23584865:C:T	rs11046993	C	T	C	Sox3.mouse_HMG_3	3	1	-	2.1447963524816225	-3.636768535047609	AATGAAATACAGTGATA
chr12	23722437	23722438	chr12:23722438:T:C	rs10771021	T	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr12	23859451	23859452	chr12:23859452:A:G	rs113782509	A	G	A	Sox3.mouse_HMG_3	5	1	+	10.293642257232548	3.8048073351616862	GGTGAATTCTAGTCAGA
chr12	24024615	24024616	chr12:24024616:T:G	rs1021672	T	G	T	Sox3.mouse_HMG_3	5	1	-	1.48873394975816	-5.1187067147205525	TCTGAAATGTAGTCAGT
chr12	24037071	24037072	chr12:24037072:T:A	rs10842264	T	A	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr12	24185806	24185807	chr12:24185807:A:T	rs117223319	A	T	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr12	24596939	24596940	chr12:24596940:T:C	rs7298579	T	C	T	Sox3.mouse_HMG_3	15	1	+	2.2091028987562558	-2.5052905129588123	TGTGAATTTAAATCATG
chr12	24601004	24601005	chr12:24601005:G:A	rs150280911	G	A	G	Sox3.mouse_HMG_3	15	1	-	4.343212702580027	9.057606114295094	CAAGAATTCCAGTCACA
chr12	24860651	24860652	chr12:24860652:T:A	rs73079568	T	A	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr12	24961914	24961915	chr12:24961915:T:C	rs4489839	T	C	t	Sox3.mouse_HMG_3	4	1	-	4.158991403491979	-2.223825324502089	CTTGAATTTTGTTCAAG
chr12	25019975	25019976	chr12:25019976:G:T	rs12814660	G	T	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr12	25035596	25035597	chr12:25035597:G:A	rs859203	G	A	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr12	25415234	25415235	chr12:25415235:C:G	rs11048014	C	G	G	Sox3.mouse_HMG_3	9	1	+	4.082749112105073	-1.2571798952694901	GAGGAATGACAGTAATG
chr12	25415288	25415289	chr12:25415289:C:T	rs11048015	C	T	C	Sox3.mouse_HMG_3	8	1	-	2.7357644675638353	2.112647820386022	AGTGAATGGCATCCTTA
chr12	25495393	25495394	chr12:25495394:G:T	rs11048077	G	T	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr12	25612355	25612356	chr12:25612356:C:T	rs7956349	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr12	25701539	25701540	chr12:25701540:G:A	rs147932652	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr12	25718919	25718920	chr12:25718920:T:C	rs6487510	T	C	T	Sox3.mouse_HMG_3	16	1	-	2.0747051166101937	2.1106455730627194	GGGGAATGTCATTGATA
chr12	25760031	25760032	chr12:25760032:A:G	rs1462721	A	G	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr12	25769302	25769303	chr12:25769303:A:G	rs74741776	A	G	A	Sox3.mouse_HMG_3	10	1	+	4.067032409876801	-2.540918231663995	TCTGCATTGCATTCAGA
chr12	25798206	25798207	chr12:25798207:C:T	rs12578641	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr12	25864689	25864690	chr12:25864690:G:C	rs10505984	G	C	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	25876901	25876902	chr12:25876902:T:C	rs73287299	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr12	25959991	25959992	chr12:25959992:T:C	rs7965449	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr12	26028115	26028116	chr12:26028116:G:A	rs2729633	G	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr12	26127780	26127781	chr12:26127781:G:C	rs10431216	G	C	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr12	26150944	26150945	chr12:26150945:A:G	rs191815175	A	G	A	Sox3.mouse_HMG_3	5	1	+	9.331796034587947	2.8429611125170813	CAAGAATGCTATTCATC
chr12	26185360	26185361	chr12:26185361:A:C	rs10842688	A	C	A	Sox3.mouse_HMG_3	0	1	+	3.4005663360070884	2.5020587380168138	AATGATTGACAGGCATG
chr12	26188547	26188548	chr12:26188548:C:T	rs114400680	C	T	C	Sox3.mouse_HMG_3	3	1	-	1.991943335354328	-3.7896215521749026	GATGAATTATAATTAGG
chr12	26330304	26330305	chr12:26330305:A:T	rs564475058	A	T	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr12	26829023	26829024	chr12:26829024:T:A	rs2881006	T	A	A	Sox3.mouse_HMG_3	4	1	-	2.8955088067290466	-3.711931857749666	TAAGAATTACATTTAAA
chr12	27022642	27022643	chr12:27022643:G:T	rs77394744	G	T	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr12	27303124	27303125	chr12:27303125:T:C	rs2100839	T	C	T	Sox3.mouse_HMG_3	11	1	+	4.089750190160318	-1.9948606359416265	TATGAATTTCTTTGATG
chr12	27316594	27316595	chr12:27316595:A:G	rs1122737	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr12	27316596	27316597	chr12:27316597:A:C	rs116740723	A	C	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	27324772	27324773	chr12:27324773:C:T	rs189589246	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr12	27377844	27377845	chr12:27377845:G:A	rs11048994	G	A	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr12	27400807	27400808	chr12:27400808:A:C	rs1037920	A	C	A	Sox3.mouse_HMG_3	2	1	-	6.9198385098690105	0.17085854799740596	ATTGAATTCTAATCATT
chr12	27584822	27584823	chr12:27584823:C:T	rs7316571	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr12	27810905	27810906	chr12:27810906:T:C	rs10842992	T	C	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr12	28040648	28040649	chr12:28040649:A:G	rs10843074	A	G	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr12	28105243	28105244	chr12:28105244:C:A	rs35808328	C	A	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr12	28105261	28105262	chr12:28105262:G:T	rs185286466	G	T	G	Sox3.mouse_HMG_3	9	1	-	3.9819111822655486	-2.0723074422427707	GATGGTTGGCATTCAAA
chr12	28177701	28177702	chr12:28177702:A:G	rs73267540	A	G	A	Sox3.mouse_HMG_3	11	1	-	3.248187268908481	-2.8364235571934637	AATGAATGAGATACAGG
chr12	28177725	28177726	chr12:28177726:C:T	rs6487665	C	T	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr12	28198307	28198308	chr12:28198308:C:T	rs10843125	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr12	28498981	28498982	chr12:28498982:T:C	rs11049669	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr12	28558611	28558612	chr12:28558612:A:G	rs11049713	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr12	28601746	28601747	chr12:28601747:G:C	rs4429095	G	C	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr12	28911987	28911988	chr12:28911988:G:A	rs73095742	G	A	G	Sox3.mouse_HMG_3	1	1	+	1.7498542852511803	4.849984221688471	TGTGCAGGATATTCATA
chr12	29033814	29033815	chr12:29033815:T:G	rs7962367	T	G	T	Sox3.mouse_HMG_3	12	1	+	2.1372324830531735	-4.243842363268738	ATTAAATTACACTCATG
chr12	29099978	29099979	chr12:29099979:C:A	rs7136844	C	A	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr12	29211873	29211874	chr12:29211874:A:G	rs7954686	A	G	A	Sox3.mouse_HMG_3	1	1	+	5.9853070312615175	2.8851770948242264	TATGACTGGTATTCTTA
chr12	29351622	29351623	chr12:29351623:A:G	rs10082956	A	G	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr12	29767384	29767385	chr12:29767385:T:C	rs10843503	T	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr12	29769008	29769009	chr12:29769009:T:C	rs190912476	T	C	T	Sox3.mouse_HMG_3	2	1	+	2.0483434486394065	-4.557535669591524	TCTGTATTCTAGTCAAT
chr12	29826474	29826475	chr12:29826475:G:A	rs7136547	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr12	29971436	29971437	chr12:29971437:T:C	rs12817216	T	C	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr12	29990223	29990224	chr12:29990224:T:C	rs1909164	T	C	C	Sox3.mouse_HMG_3	10	1	-	3.3638739890054525	-3.2440766525353455	AAGGCATTTTATTCATA
chr12	30088263	30088264	chr12:30088264:G:A	rs56067927	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr12	30100566	30100567	chr12:30100567:C:T	rs1120161	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr12	30111234	30111235	chr12:30111235:A:G	rs10219620	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr12	30111277	30111278	chr12:30111278:A:G	rs11833750	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr12	30302591	30302592	chr12:30302592:T:C	rs2703364	T	C	t	Sox3.mouse_HMG_3	14	1	-	5.47777037701922	-0.9041757894076905	GATGAAGGCTGTTCATG
chr12	30725924	30725925	chr12:30725925:G:C	rs7304879	G	C	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr12	30827263	30827264	chr12:30827264:C:T	rs1564871	C	T	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr12	30875812	30875813	chr12:30875813:T:G	rs10771777	T	G	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr12	30875840	30875841	chr12:30875841:T:C	rs10843848	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.6167240255786455	-0.4834059108586469	AATGCATTCTATTTATT
chr12	30929389	30929390	chr12:30929390:T:C	rs11613187	T	C	C	Sox3.mouse_HMG_3	1	1	+	1.8298334998872259	0.6230507942204266	CTTGAATTTTGGTCAGA
chr12	31223874	31223875	chr12:31223875:T:G	rs7304146	T	G	.	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr12	31232344	31232345	chr12:31232345:C:T	rs12831069	C	T	C	Sox3.mouse_HMG_3	13	1	+	2.9301046147667753	-3.6771559956952444	GAAGAAAGTCATTCAGA
chr12	31245633	31245634	chr12:31245634:C:A	rs59923491	C	A	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr12	31246711	31246712	chr12:31246712:G:A	rs148226034	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr12	31373724	31373725	chr12:31373725:T:C	rs4931485	T	C	T	Sox3.mouse_HMG_3	11	1	+	2.466544591156571	-3.618066234945373	GATGAATGGGCTTCACG
chr12	31466990	31466991	chr12:31466991:A:C	rs7954023	A	C	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr12	31586885	31586886	chr12:31586886:T:G	rs148389959	T	G	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr12	31600988	31600989	chr12:31600989:G:T	rs11051478	G	T	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr12	31625792	31625793	chr12:31625793:G:A	rs10771858	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr12	31641261	31641262	chr12:31641262:A:G	rs7313475	A	G	a	Sox3.mouse_HMG_3	2	1	-	0.2800322381106619	-6.3258468801202685	GGTGAAGGTCATTCTTC
chr12	31856687	31856688	chr12:31856688:T:G	rs11051630	T	G	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr12	31877564	31877565	chr12:31877565:C:T	rs56315906	C	T	c	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr12	31878313	31878314	chr12:31878314:C:T	rs1666228	C	T	t	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr12	31886901	31886902	chr12:31886902:G:C	rs1666209	G	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr12	31887910	31887911	chr12:31887911:T:C	rs1797787	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr12	31899487	31899488	chr12:31899488:C:A	rs1150975	C	A	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr12	31965287	31965288	chr12:31965288:G:A	rs193175329	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr12	32022685	32022686	chr12:32022686:C:T	rs1260158	C	T	C	Sox3.mouse_HMG_3	9	1	+	2.4807895888114704	2.4884262658032146	TGTGAATGACATGCCTA
chr12	32039978	32039979	chr12:32039979:A:G	rs11051743	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr12	32241627	32241628	chr12:32241628:A:G	rs12296246	A	G	G	Sox3.mouse_HMG_3	5	1	+	2.5939144474234466	-3.8949204746474173	TGTGAATTGTACTCCTG
chr12	32276184	32276185	chr12:32276185:C:T	rs1151037	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr12	32301307	32301308	chr12:32301308:C:T	rs11830407	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr12	32762245	32762246	chr12:32762246:G:A	rs73299909	G	A	A	Sox3.mouse_HMG_3	15	1	-	1.0911337137261081	5.805527125441176	GCTGAATTACAGTCCCG
chr12	32920569	32920570	chr12:32920570:G:A	rs10844385	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr12	33322623	33322624	chr12:33322624:T:A	rs10743816	T	A	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr12	33640986	33640987	chr12:33640987:T:C	rs12820852	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr12	33955917	33955918	chr12:33955918:G:A	rs12423422	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr12	33995217	33995218	chr12:33995218:G:C	chr12:33995218:G:C	G	C	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr12	37555766	37555767	chr12:37555767:C:T	rs76842327	C	T	.	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr12	38851003	38851004	chr12:38851004:C:T	rs78071188	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr12	39035981	39035982	chr12:39035982:A:T	rs61937603	A	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr12	39645375	39645376	chr12:39645376:A:G	rs12309999	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr12	39914170	39914171	chr12:39914171:G:A	rs10877772	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr12	39951850	39951851	chr12:39951851:T:C	rs11564225	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr12	40047718	40047719	chr12:40047719:T:C	rs10878035	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr12	40051597	40051598	chr12:40051598:G:C	rs17489267	G	C	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr12	40059261	40059262	chr12:40059262:T:A	rs17442213	T	A	T	Sox3.mouse_HMG_3	15	1	-	1.9461763127101672	4.209985776946988	AATGAAATGTATTGAAA
chr12	40106745	40106746	chr12:40106746:G:C	rs542666842	G	C	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr12	40147824	40147825	chr12:40147825:A:G	rs11175332	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr12	40159090	40159091	chr12:40159091:C:T	rs10878170	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr12	40159092	40159093	chr12:40159093:C:T	rs17461429	C	T	C	Sox3.mouse_HMG_3	0	1	+	1.6092851331157136	3.0641557784525784	CATGAGTGCTTTTCAAG
chr12	40238296	40238297	chr12:40238297:T:G	rs10878246	T	G	T	Sox3.mouse_HMG_3	12	1	+	8.234907036739362	1.8538321904174515	GGTGAATTTCATTCGTG
chr12	40238297	40238298	chr12:40238298:C:T	rs10878247	C	T	C	Sox3.mouse_HMG_3	13	1	+	8.234907036739362	1.6276464262773411	GGTGAATTTCATTCGTG
chr12	40515119	40515120	chr12:40515120:T:A	rs11176994	T	A	.	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr12	40559092	40559093	chr12:40559093:G:A	rs11613339	G	A	G	Sox3.mouse_HMG_3	9	1	-	2.1321372875921125	2.1397739645838585	TGTGAATTACAGACACA
chr12	40978842	40978843	chr12:40978843:G:A	rs935103	G	A	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr12	41277813	41277814	chr12:41277814:A:G	rs12307881	A	G	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr12	41277845	41277846	chr12:41277846:G:A	rs12314080	G	A	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr12	41487106	41487107	chr12:41487107:A:C	rs2733287	A	C	C	Sox3.mouse_HMG_3	12	1	-	3.872290148379782	-2.5087846979421284	AATTAATTTTAATCATA
chr12	41515184	41515185	chr12:41515185:G:A	rs2608717	G	A	A	Sox3.mouse_HMG_3	11	1	+	0.7973899688215962	-3.8527847569845424	TTTGAAAGCCAGTGATG
chr12	41558992	41558993	chr12:41558993:A:G	rs157973	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr12	41559021	41559022	chr12:41559022:G:A	rs157972	G	A	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr12	41605970	41605971	chr12:41605971:C:T	rs366921	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr12	41615300	41615301	chr12:41615301:G:C	rs287035	G	C	G	Sox3.mouse_HMG_3	3	1	+	1.5449327514751738	-5.204557984229876	GCTGAATGTTAATCACC
chr12	41932086	41932087	chr12:41932087:T:C	rs7307508	T	C	C	Sox3.mouse_HMG_3	4	1	-	1.0367143647538888	-5.34610236324018	GTTGAATGATGGTGATG
chr12	42040422	42040423	chr12:42040423:C:T	rs17548146	C	T	c	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr12	42135669	42135670	chr12:42135670:C:T	rs7971943	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr12	42612737	42612738	chr12:42612738:G:T	rs2406861	G	T	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr12	42736007	42736008	chr12:42736008:T:C	rs557645924	T	C	T	Sox3.mouse_HMG_3	5	1	+	3.410948131081632	3.410948131081632	CAAGATTGATATTCATT
chr12	43097604	43097605	chr12:43097605:A:G	rs1656534	A	G	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr12	43234632	43234633	chr12:43234633:G:C	chr12:43234633:G:C	G	C	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr12	43333192	43333193	chr12:43333193:G:A	rs10880456	G	A	A	Sox3.mouse_HMG_3	7	1	+	1.8159038344386715	-4.737644880219058	GTTGAATGCTTTACATT
chr12	43333221	43333222	chr12:43333222:G:A	rs10880457	G	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr12	43540745	43540746	chr12:43540746:A:G	rs275625	A	G	A	Sox3.mouse_HMG_3	11	1	+	4.6632101924292195	9.313384918235357	GATAAATGCCAATCAAA
chr12	43638849	43638850	chr12:43638850:C:T	rs17093566	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	43728389	43728390	chr12:43728390:G:A	rs79595727	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr12	43758737	43758738	chr12:43758738:A:G	chr12:43758738:A:G	A	G	A	Sox3.mouse_HMG_3	0	1	+	1.0257069284634777	1.8509908296098212	AGTGGAAGGCATTCATT
chr12	44190815	44190816	chr12:44190816:T:C	rs189723951	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr12	44833962	44833963	chr12:44833963:T:C	rs3847982	T	C	T	Sox3.mouse_HMG_3	6	1	+	4.274859948673775	-2.333090692867022	TCTGAATGCTAGTCTAA
chr12	45235539	45235540	chr12:45235540:G:A	rs151036316	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr12	45256912	45256913	chr12:45256913:A:G	rs11182950	A	G	A	Sox3.mouse_HMG_3	9	1	-	1.1859288188069046	1.1782921418151586	GATGATTAATATTCAGT
chr12	45459882	45459883	chr12:45459883:G:A	rs7315711	G	A	g	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr12	45459891	45459892	chr12:45459892:A:G	rs11183058	A	G	A	Sox3.mouse_HMG_3	4	1	+	5.803926067490204	-0.5788906605038628	TTTGAATTTTATTCTAA
chr12	45500530	45500531	chr12:45500531:A:G	rs7968560	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr12	45620282	45620283	chr12:45620283:T:C	rs2712602	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr12	45966633	45966634	chr12:45966634:G:A	rs75091769	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr12	45966656	45966657	chr12:45966657:C:G	chr12:45966657:C:G	C	G	C	Sox3.mouse_HMG_3	4	1	-	2.521144514077706	2.1534197339523886	ACTGGATGATATTCACA
chr12	46220857	46220858	chr12:46220858:C:T	rs10880939	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr12	46385340	46385341	chr12:46385341:C:T	rs77288835	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr12	46390960	46390961	chr12:46390961:T:C	rs4768118	T	C	C	Sox3.mouse_HMG_3	6	1	+	3.893426661497612	-2.714523980043185	GATGGATGGTAGTCTTT
chr12	46430159	46430160	chr12:46430160:A:G	rs77194533	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr12	46462235	46462236	chr12:46462236:T:G	rs6582657	T	G	G	Sox3.mouse_HMG_3	16	1	+	4.0220168252089445	5.2089463414139665	TATGAGTGTTGTTCATT
chr12	46724721	46724722	chr12:46724722:T:C	rs1030120	T	C	t	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr12	46724722	46724723	chr12:46724723:G:A	rs10785638	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr12	46785533	46785534	chr12:46785534:A:G	rs180431	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr12	46905505	46905506	chr12:46905506:G:A	rs148345049	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr12	46964606	46964607	chr12:46964607:C:T	rs78232639	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr12	46964628	46964629	chr12:46964629:G:A	rs2408643	G	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr12	46964629	46964630	chr12:46964630:C:A	rs78470592	C	A	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr12	47189559	47189560	chr12:47189560:C:T	rs4768143	C	T	C	Sox3.mouse_HMG_3	16	1	-	4.855145412459668	4.819204956007142	CTTGAATGGTGTTCAGG
chr12	47329128	47329129	chr12:47329129:C:T	rs855231	C	T	T	Sox3.mouse_HMG_3	9	1	+	3.889941746683003	3.897578423674749	TAAGAATGTCATGCAAA
chr12	47340573	47340574	chr12:47340574:A:G	rs11183873	A	G	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	47350896	47350897	chr12:47350897:G:T	rs1730449	G	T	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr12	47418272	47418273	chr12:47418273:G:T	rs12311595	G	T	G	Sox3.mouse_HMG_3	8	1	+	5.921063022759238	5.2161606091652	GATGACAGGTATTCATG
chr12	47727189	47727190	chr12:47727190:C:T	rs73105819	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr12	47876812	47876813	chr12:47876813:T:C	rs6580642	T	C	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr12	48342655	48342656	chr12:48342656:T:C	rs1061986	T	C	t	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr12	48754126	48754127	chr12:48754127:G:A	rs7977935	G	A	g	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr12	48884250	48884251	chr12:48884251:G:A	rs116982128	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr12	49106614	49106615	chr12:49106615:G:A	rs10783304	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr12	49698875	49698876	chr12:49698876:C:A	rs188673188	C	A	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr12	49872069	49872070	chr12:49872070:C:T	rs836969	C	T	T	Sox3.mouse_HMG_3	0	1	-	3.399290088148059	2.5740061870017152	GATGAATGAGTTTCAGA
chr12	50059198	50059199	chr12:50059199:C:T	rs774092298	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr12	50559103	50559104	chr12:50559104:T:C	rs933880605	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr12	50614575	50614576	chr12:50614576:A:C	rs1402693	A	C	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr12	50838806	50838807	chr12:50838807:G:A	rs1583697	G	A	G	Sox3.mouse_HMG_3	3	1	+	6.396373673747663	0.6148087862184324	AATGAATTGCAGTTAGA
chr12	50868961	50868962	chr12:50868962:G:T	rs1096030	G	T	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr12	51265223	51265224	chr12:51265224:G:A	rs772860981	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr12	51695472	51695473	chr12:51695473:A:G	rs4761830	A	G	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr12	52192290	52192291	chr12:52192291:G:A	rs147069715	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr12	52192294	52192295	chr12:52192295:G:A	rs80152477	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr12	52192297	52192298	chr12:52192298:G:T	rs147823539	G	T	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr12	52294981	52294982	chr12:52294982:C:T	rs7295468	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr12	52299030	52299031	chr12:52299031:A:G	rs12321010	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr12	52318710	52318711	chr12:52318711:G:A	rs13377620	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr12	52318741	52318742	chr12:52318742:C:G	rs61915675	C	G	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr12	52365718	52365719	chr12:52365719:T:C	rs11170101	T	C	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr12	52391155	52391156	chr12:52391156:C:T	rs143404571	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr12	52427376	52427377	chr12:52427377:C:G	rs10876289	C	G	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr12	52790940	52790941	chr12:52790941:G:A	rs12312467	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr12	52878927	52878928	chr12:52878928:A:T	rs7959089	A	T	T	Sox3.mouse_HMG_3	2	1	+	0.9082652942190885	6.635594008558712	GAAGCATTCCAGTCAGA
chr12	52951045	52951046	chr12:52951046:C:T	rs2070876	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr12	53035811	53035812	chr12:53035812:C:G	rs76096382	C	G	C	Sox3.mouse_HMG_3	4	1	+	5.085643807953444	5.453368588078761	CTTGCATTTCATTCATT
chr12	53048914	53048915	chr12:53048915:C:G	rs376161912	C	G	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr12	53279581	53279582	chr12:53279582:T:C	rs139120998	T	C	t	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr12	53370794	53370795	chr12:53370795:T:G	rs112007888	T	G	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr12	53481750	53481751	chr12:53481751:G:A	rs784564	G	A	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr12	53733593	53733594	chr12:53733594:C:T	rs59067455	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr12	53733594	53733595	chr12:53733595:A:G	rs59029921	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr12	53832172	53832173	chr12:53832173:C:G	rs182689502	C	G	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr12	54003613	54003614	chr12:54003614:C:T	rs180979240	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr12	54013505	54013506	chr12:54013506:C:T	rs11170785	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr12	54013512	54013513	chr12:54013513:A:G	rs4759317	A	G	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr12	54054321	54054322	chr12:54054322:A:G	rs75256744	A	G	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr12	54208043	54208044	chr12:54208044:G:A	rs4759347	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr12	54229865	54229866	chr12:54229866:C:T	rs12427355	C	T	C	Sox3.mouse_HMG_3	13	1	+	1.8922356266474492	-4.715024983814571	AATGAACGCCATGCAGG
chr12	54394434	54394435	chr12:54394435:G:A	rs988410424	G	A	G	Sox3.mouse_HMG_3	0	1	+	2.280639055574855	1.4553551544285108	GCTGAATTTTAGTCTAT
chr12	54394446	54394447	chr12:54394447:T:C	rs954766798	T	C	T	Sox3.mouse_HMG_3	12	1	+	2.280639055574855	-3.912214511825911	GCTGAATTTTAGTCTAT
chr12	54648575	54648576	chr12:54648576:T:G	rs11171000	T	G	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr12	54702473	54702474	chr12:54702474:C:A	rs141015277	C	A	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr12	54892038	54892039	chr12:54892039:T:C	rs75114927	T	C	T	Sox3.mouse_HMG_3	10	1	-	1.3829237039104083	-5.22502693763039	AAAGAAAGGTAGTCAGA
chr12	55017917	55017918	chr12:55017918:A:G	rs60220639	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr12	55017931	55017932	chr12:55017932:A:C	rs17116813	A	C	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	55675109	55675110	chr12:55675110:T:A	rs117901979	T	A	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr12	55724932	55724933	chr12:55724933:A:G	rs141649028	A	G	A	Sox3.mouse_HMG_3	14	1	+	2.374532478676774	-4.0074136877501365	TGGGAATGGTCTTCATA
chr12	55970860	55970861	chr12:55970861:G:A	rs2069410	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr12	56115601	56115602	chr12:56115602:A:G	rs1689513	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr12	56115625	56115626	chr12:56115626:C:T	rs79665878	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr12	56360234	56360235	chr12:56360235:A:G	rs986770974	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr12	56360242	56360243	chr12:56360243:A:G	rs531461337	A	G	A	Sox3.mouse_HMG_3	16	1	-	2.3329650854305983	1.4660383459583195	ACTGAATGGCAGCCAGT
chr12	56644803	56644804	chr12:56644804:T:C	chr12:56644804:T:C	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr12	56644845	56644846	chr12:56644846:A:G	chr12:56644846:A:G	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr12	56662097	56662098	chr12:56662098:T:C	rs74320325	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr12	56699311	56699312	chr12:56699312:A:G	rs1563896	A	G	N	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr12	56699315	56699316	chr12:56699316:T:C	rs1563897	T	C	t	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr12	56882498	56882499	chr12:56882499:T:C	rs6581113	T	C	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr12	56882505	56882506	chr12:56882506:A:T	rs6581114	A	T	A	Sox3.mouse_HMG_3	12	1	-	10.293642257232548	4.18083139750532	GGTGAATTCTAGTCAGA
chr12	56928550	56928551	chr12:56928551:C:T	rs78195265	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr12	57159215	57159216	chr12:57159216:C:T	rs34505337	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr12	57367319	57367320	chr12:57367320:A:C	rs4760228	A	C	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr12	57744962	57744963	chr12:57744963:C:T	rs140758977	C	T	C	Sox3.mouse_HMG_3	13	1	+	0.19073536534471658	-6.416525245117303	GTTGATTGGCATGCAGG
chr12	58069696	58069697	chr12:58069697:G:T	chr12:58069697:G:T	G	T	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr12	58143566	58143567	chr12:58143567:G:A	rs7297872	G	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr12	58265028	58265029	chr12:58265029:T:C	rs61921167	T	C	C	Sox3.mouse_HMG_3	5	1	-	2.5012796117059435	-3.98755531036492	CATGAAAGCCAGTAATA
chr12	58502893	58502894	chr12:58502894:G:A	rs11172636	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr12	58529433	58529434	chr12:58529434:A:G	rs11172649	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr12	58529441	58529442	chr12:58529442:T:C	chr12:58529442:T:C	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr12	58851122	58851123	chr12:58851123:T:C	rs17121582	T	C	T	Sox3.mouse_HMG_3	16	1	+	4.722207955715738	3.855281216243459	TAAGAATGATTTTCATT
chr12	58892891	58892892	chr12:58892892:T:C	rs17121690	T	C	T	Sox3.mouse_HMG_3	9	1	+	2.131929208740229	2.124292531748483	TATGAAAGATATTCTGG
chr12	58893647	58893648	chr12:58893648:C:A	rs77116922	C	A	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr12	59075533	59075534	chr12:59075534:T:A	rs907344	T	A	A	Sox3.mouse_HMG_3	4	1	-	0.744841156034193	-5.862599508444518	GGTGATTGCTACTCAAA
chr12	59122869	59122870	chr12:59122870:C:T	rs7136863	C	T	C	Sox3.mouse_HMG_3	15	1	-	1.8565628226153355	2.7153441694717557	AAAGAATTTTATCCAGG
chr12	59536268	59536269	chr12:59536269:G:A	rs402342	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr12	59572214	59572215	chr12:59572215:C:T	rs2671853	C	T	T	Sox3.mouse_HMG_3	9	1	+	0.8491915790151279	0.8568282560068738	GATGACCTACAGTCAAA
chr12	59675697	59675698	chr12:59675698:T:G	rs79205592	T	G	G	Sox3.mouse_HMG_3	4	1	-	8.288423957207876	1.5378824490884901	CATGAATTATATTTATT
chr12	59736821	59736822	chr12:59736822:C:A	rs1882505	C	A	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr12	60153357	60153358	chr12:60153358:T:C	rs112281161	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr12	61188980	61188981	chr12:61188981:G:A	rs1546411	G	A	G	Sox3.mouse_HMG_3	9	1	-	2.5101720817053033	2.5178087586970492	GGTGAATGCCGGTCAGC
chr12	61189007	61189008	chr12:61189008:C:G	rs12423993	C	G	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr12	62103088	62103089	chr12:62103089:T:A	rs80334311	T	A	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr12	62189848	62189849	chr12:62189849:C:T	rs1920091	C	T	T	Sox3.mouse_HMG_3	11	1	-	3.773963500925646	-0.8762112248804929	GATGAATTTCAGTTACT
chr12	62314037	62314038	chr12:62314038:G:A	rs12228015	G	A	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr12	62463402	62463403	chr12:62463403:C:T	rs10747964	C	T	t	Sox3.mouse_HMG_3	15	1	+	5.967950009791545	10.682343421506614	AAAGAATTGCATTCACT
chr12	62695732	62695733	chr12:62695733:T:C	rs11174605	T	C	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr12	62852850	62852851	chr12:62852851:C:T	rs59816756	C	T	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr12	63084547	63084548	chr12:63084548:A:T	rs560867016	A	T	A	Sox3.mouse_HMG_3	6	1	-	1.9229123606632073	-4.828139124518263	CATGAGTTACAGCCATA
chr12	63107545	63107546	chr12:63107546:T:C	rs983452	T	C	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr12	63396425	63396426	chr12:63396426:G:A	rs117419898	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr12	63529060	63529061	chr12:63529061:T:C	rs12319507	T	C	t	Sox3.mouse_HMG_3	1	1	-	2.343887884388486	-0.7562420520488065	AATGAATTCTATGAATC
chr12	63666249	63666250	chr12:63666250:A:G	rs3884366	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr12	63968938	63968939	chr12:63968939:C:T	rs11175219	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr12	64008729	64008730	chr12:64008730:G:A	rs3930087	G	A	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr12	64082869	64082870	chr12:64082870:T:C	rs11175255	T	C	T	Sox3.mouse_HMG_3	5	1	-	1.583347123860987	-4.905487798209877	GATGAAAGCTATCCAGT
chr12	64098882	64098883	chr12:64098883:A:G	rs116855585	A	G	A	Sox3.mouse_HMG_3	12	1	-	3.47381605294691	-2.7190375144538566	GTTGAATGGTTATCATG
chr12	64175693	64175694	chr12:64175694:A:C	chr12:64175694:A:C	A	C	A	Sox3.mouse_HMG_3	8	1	+	3.552847158475706	3.7331811369755874	AATGTATGACAGCCATA
chr12	64299584	64299585	chr12:64299585:G:A	rs1347576	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr12	64369004	64369005	chr12:64369005:A:G	rs55999447	A	G	A	Sox3.mouse_HMG_3	6	1	-	4.856767117156357	-1.7511835243844427	CTTGATTTGCATTCAAG
chr12	64655437	64655438	chr12:64655438:G:A	rs12815802	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr12	64655471	64655472	chr12:64655472:T:A	rs1716518	T	A	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr12	64714379	64714380	chr12:64714380:G:C	rs1061743	G	C	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr12	64930954	64930955	chr12:64930955:G:C	rs3910533	G	C	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr12	64951041	64951042	chr12:64951042:C:T	rs75509127	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr12	65372717	65372718	chr12:65372718:T:C	rs10784447	T	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr12	65443789	65443790	chr12:65443790:C:G	rs56160102	C	G	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr12	65520126	65520127	chr12:65520127:T:C	rs10878294	T	C	t	Sox3.mouse_HMG_3	9	1	+	2.8500342208119815	2.8423975438202356	TTTGAATGATAGTAACA
chr12	65699677	65699678	chr12:65699678:C:T	rs76178465	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr12	65728344	65728345	chr12:65728345:G:C	rs148859520	G	C	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr12	65779765	65779766	chr12:65779766:C:T	rs2260622	C	T	T	Sox3.mouse_HMG_3	1	1	-	2.6912712384063404	5.7914011748436325	CGTGAAATTCATTCAAT
chr12	66033054	66033055	chr12:66033055:T:C	rs7397918	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr12	66067177	66067178	chr12:66067178:G:T	rs34878787	G	T	T	Sox3.mouse_HMG_3	11	1	+	1.8005955456161131	3.23503164591192	GATGAAATGCAGTCCTC
chr12	66268849	66268850	chr12:66268850:G:A	rs12822967	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr12	66644359	66644360	chr12:66644360:T:C	rs10878484	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr12	66647281	66647282	chr12:66647282:A:G	rs1231067356	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr12	66970414	66970415	chr12:66970415:G:A	rs73315253	G	A	G	Sox3.mouse_HMG_3	16	1	+	1.5683972503478867	1.532456793895361	GTTGAAAGCTAGACATG
chr12	67019028	67019029	chr12:67019029:G:C	rs80329281	G	C	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr12	67294559	67294560	chr12:67294560:C:T	rs1392588	C	T	C	Sox3.mouse_HMG_3	11	1	-	4.333301371783142	-0.31687335402299666	TATGAATGCTAGCTATG
chr12	67315855	67315856	chr12:67315856:T:C	rs1136080	T	C	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr12	67322470	67322471	chr12:67322471:C:G	rs12366819	C	G	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr12	67388078	67388079	chr12:67388079:T:C	rs7955266	T	C	C	Sox3.mouse_HMG_3	6	1	+	2.328284469899602	-4.279666171641194	GTTAAATGACATTCTTT
chr12	67469696	67469697	chr12:67469697:G:A	rs77180483	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr12	67469734	67469735	chr12:67469735:T:A	rs115931454	T	A	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr12	67700296	67700297	chr12:67700297:G:A	rs1904557	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr12	67748175	67748176	chr12:67748176:C:T	rs372519188	C	T	C	Sox3.mouse_HMG_3	7	1	-	2.163613672223928	-4.3899350424338	AATGAAAGGTATGCAGA
chr12	67854651	67854652	chr12:67854652:G:A	rs7295446	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr12	68240114	68240115	chr12:68240115:T:C	rs73332770	T	C	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr12	68240123	68240124	chr12:68240124:T:C	rs192378081	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr12	68349160	68349161	chr12:68349161:G:A	rs7134316	G	A	G	Sox3.mouse_HMG_3	0	1	-	3.534555975589642	4.989426620926508	CTTAAATGTCAGTCAGG
chr12	68400297	68400298	chr12:68400298:A:G	rs7976934	A	G	G	Sox3.mouse_HMG_3	1	1	+	0.9884260482831609	-2.111703888154132	GATGTATGATCTTCAGT
chr12	68612733	68612734	chr12:68612734:T:C	rs117165587	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr12	68799775	68799776	chr12:68799776:C:T	rs10748111	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr12	68804850	68804851	chr12:68804851:C:T	rs1144941	C	T	C	Sox3.mouse_HMG_3	13	1	+	0.9922246781132669	-5.6150359323487535	AGTGCATGGGATTCAAG
chr12	68867263	68867264	chr12:68867264:C:T	rs1144949	C	T	C	Sox3.mouse_HMG_3	11	1	-	1.528072522807324	-3.122102202998814	GTTGAACTTCAGTCAGC
chr12	68892536	68892537	chr12:68892537:G:T	rs7959458	G	T	G	Sox3.mouse_HMG_3	3	1	+	8.98689167468629	2.0803971901715763	TTTGAATGCTAGTCAGC
chr12	69010510	69010511	chr12:69010511:C:T	rs12578667	C	T	c	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr12	69029538	69029539	chr12:69029539:C:T	rs79422354	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr12	69068687	69068688	chr12:69068688:T:G	chr12:69068688:T:G	T	G	t	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr12	69158184	69158185	chr12:69158185:G:C	rs7138204	G	C	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr12	69330719	69330720	chr12:69330720:G:A	rs1051010717	G	A	G	Sox3.mouse_HMG_3	13	1	-	2.321636140756527	-4.285624469705493	CATGAATGACTGTCGTA
chr12	69338245	69338246	chr12:69338246:A:T	rs78483473	A	T	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr12	69398207	69398208	chr12:69398208:G:A	chr12:69398208:G:A	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr12	69398244	69398245	chr12:69398245:A:G	rs315143	A	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr12	69435798	69435799	chr12:69435799:G:C	rs13377945	G	C	T	Sox3.mouse_HMG_3	15	1	-	2.0146118788121075	3.6064144794339343	GCTGAGTGCCAGTCACG
chr12	69594943	69594944	chr12:69594944:A:T	rs17813407	A	T	a	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr12	69684391	69684392	chr12:69684392:C:T	rs710714	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr12	69688977	69688978	chr12:69688978:G:A	rs11177794	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr12	69948399	69948400	chr12:69948400:G:C	rs11177989	G	C	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr12	70003247	70003248	chr12:70003248:T:C	rs1565723	T	C	T	Sox3.mouse_HMG_3	5	1	-	3.840487353265062	-2.648347568805801	AATGAATTACTTTCCTG
chr12	70228643	70228644	chr12:70228644:T:C	rs17226129	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr12	70661165	70661166	chr12:70661166:C:A	rs75405399	C	A	C	Sox3.mouse_HMG_3	15	1	-	2.429781795418709	5.55237260651195	GATAAAAGGCATTCAGT
chr12	70812813	70812814	chr12:70812814:C:G	rs11178437	C	G	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr12	70815760	70815761	chr12:70815761:T:C	rs2458438	T	C	C	Sox3.mouse_HMG_3	14	1	-	5.3981518196229485	-0.9837943468039622	AATGAATGTTAGTGAGT
chr12	70815770	70815771	chr12:70815771:T:G	rs2470375	T	G	T	Sox3.mouse_HMG_3	4	1	-	5.3981518196229485	-1.3523896884964373	AATGAATGTTAGTGAGT
chr12	70853014	70853015	chr12:70853015:G:A	rs79531663	G	A	G	Sox3.mouse_HMG_3	6	1	-	6.413246995008905	13.021197636549704	CGTGAACGGTAGTCATG
chr12	70853034	70853035	chr12:70853035:C:T	rs10879204	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr12	70917989	70917990	chr12:70917990:A:G	rs10879218	A	G	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr12	71011649	71011650	chr12:71011650:A:G	rs10784887	A	G	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr12	71046403	71046404	chr12:71046404:A:G	rs1996078	A	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr12	71061393	71061394	chr12:71061394:C:T	rs1512989	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr12	71199390	71199391	chr12:71199391:C:T	rs1495379	C	T	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr12	71214746	71214747	chr12:71214747:C:T	rs1390201	C	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr12	71511009	71511010	chr12:71511010:A:G	rs10748178	A	G	A	Sox3.mouse_HMG_3	15	1	-	8.627294362803593	3.9129009510885235	TTTGAATTCCATACATG
chr12	71846582	71846583	chr12:71846583:A:G	rs115904704	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr12	72262144	72262145	chr12:72262145:C:T	rs7960623	C	T	c	Sox3.mouse_HMG_3	3	1	-	3.1819769440893557	-2.599587943439876	AACGAATTGTAGTCTTG
chr12	72262145	72262146	chr12:72262146:G:A	rs746612078	G	A	G	Sox3.mouse_HMG_3	2	1	-	3.1819769440893557	9.787856062320287	AACGAATTGTAGTCTTG
chr12	72269731	72269732	chr12:72269732:A:G	rs148647243	A	G	A	Sox3.mouse_HMG_3	10	1	+	1.7895960273691063	-4.8183546141716915	AATGTATTGTACTCAGG
chr12	72511952	72511953	chr12:72511953:T:C	rs1353160	T	C	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr12	73548579	73548580	chr12:73548580:A:C	rs4882912	A	C	A	Sox3.mouse_HMG_3	14	1	-	0.761958541847868	0.761958541847868	GGTGAATTGTTGTCTTG
chr12	74286064	74286065	chr12:74286065:A:G	rs476953	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr12	74621128	74621129	chr12:74621129:G:T	rs7961062	G	T	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr12	74752415	74752416	chr12:74752416:G:A	rs10879833	G	A	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr12	74889982	74889983	chr12:74889983:C:T	rs74107411	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr12	75487237	75487238	chr12:75487238:C:T	rs12422952	C	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr12	75581105	75581106	chr12:75581106:G:C	rs7956799	G	C	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr12	75623836	75623837	chr12:75623837:C:T	rs146066126	C	T	C	Sox3.mouse_HMG_3	8	1	-	11.396813417039152	10.773696769861338	GCTGAATGGCAGTCAAG
chr12	75632779	75632780	chr12:75632780:T:A	rs79550925	T	A	T	Sox3.mouse_HMG_3	0	1	+	2.9227008585552223	2.3663378112086324	TAAGAATGACATTTAGG
chr12	75632784	75632785	chr12:75632785:A:T	rs7305673	A	T	A	Sox3.mouse_HMG_3	5	1	+	2.9227008585552223	-3.6847398059234884	TAAGAATGACATTTAGG
chr12	75838458	75838459	chr12:75838459:G:A	rs7970739	G	A	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr12	76009924	76009925	chr12:76009925:T:C	rs4831958	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr12	76152318	76152319	chr12:76152319:C:A	rs74659986	C	A	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr12	76186908	76186909	chr12:76186909:C:G	rs7964159	C	G	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr12	76266372	76266373	chr12:76266373:A:C	rs73131576	A	C	a	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr12	76266418	76266419	chr12:76266419:T:C	rs1517730	T	C	t	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr12	76348936	76348937	chr12:76348937:G:A	rs183457508	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr12	76589044	76589045	chr12:76589045:A:C	rs4432068	A	C	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr12	76954106	76954107	chr12:76954107:T:C	rs765690	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr12	77161546	77161547	chr12:77161547:A:G	rs12823431	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr12	77349289	77349290	chr12:77349290:G:A	rs12582379	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr12	77592004	77592005	chr12:77592005:T:A	rs77349708	T	A	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr12	77728286	77728287	chr12:77728287:T:C	rs151288618	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr12	77829565	77829566	chr12:77829566:A:G	rs12231296	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr12	77943653	77943654	chr12:77943654:A:G	rs79405087	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr12	78060264	78060265	chr12:78060265:C:G	rs76812446	C	G	C	Sox3.mouse_HMG_3	15	1	-	7.181907142017512	5.590104541395686	AATGAATTGTATACAGT
chr12	78144018	78144019	chr12:78144019:A:G	rs419115	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr12	78148813	78148814	chr12:78148814:T:G	rs444864	T	G	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr12	78397559	78397560	chr12:78397560:T:C	rs1510885	T	C	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr12	78698187	78698188	chr12:78698188:T:C	rs117014954	T	C	T	Sox3.mouse_HMG_3	4	1	-	1.9604883436063567	-4.422328384387714	TGCAAATTTCATTCATG
chr12	78797887	78797888	chr12:78797888:C:T	rs7135993	C	T	T	Sox3.mouse_HMG_3	8	1	+	8.683516611207995	8.421396866291888	TTAGAATGCTATTCATT
chr12	79252524	79252525	chr12:79252525:A:G	rs1245825	A	G	G	Sox3.mouse_HMG_3	5	1	+	1.7710119134719577	-4.7178230085989075	TGTGAATGGAAGTGATA
chr12	79351429	79351430	chr12:79351430:G:A	rs17292872	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr12	79769199	79769200	chr12:79769200:A:T	rs9308325	A	T	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr12	80019986	80019987	chr12:80019987:A:G	rs17006301	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr12	80236044	80236045	chr12:80236045:A:G	rs1451104	A	G	A	Sox3.mouse_HMG_3	5	1	+	3.5413394262146323	-2.9474954958562316	ATTGAATGCCAGTGAAT
chr12	80332927	80332928	chr12:80332928:A:C	rs1451101	A	C	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr12	80472988	80472989	chr12:80472989:T:G	rs150285391	T	G	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr12	80473036	80473037	chr12:80473037:T:A	rs4417374	T	A	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr12	80565718	80565719	chr12:80565719:G:A	rs113344104	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	81451029	81451030	chr12:81451030:T:C	rs74104281	T	C	T	Sox3.mouse_HMG_3	11	1	-	4.982370137703423	9.632544863509562	TATGAATTCCAATTATA
chr12	81595695	81595696	chr12:81595696:A:T	rs11114926	A	T	A	Sox3.mouse_HMG_3	12	1	-	2.5174236089916056	-3.595387250735625	GTTGAAGGATATTCTTA
chr12	81626529	81626530	chr12:81626530:T:C	rs10862331	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr12	82359866	82359867	chr12:82359867:T:A	rs8181705	T	A	T	Sox3.mouse_HMG_3	1	1	-	1.9053721130537393	-1.0647046951353556	GATGCTTTGCATTCAGA
chr12	82964286	82964287	chr12:82964287:G:T	rs12304509	G	T	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr12	83019850	83019851	chr12:83019851:C:T	rs143127751	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr12	83019859	83019860	chr12:83019860:G:A	rs148562217	G	A	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr12	83068163	83068164	chr12:83068164:T:C	rs10778938	T	C	T	Sox3.mouse_HMG_3	16	1	-	3.144438048587846	3.1803785050403715	TAAAAATGATAGTCAAA
chr12	83084652	83084653	chr12:83084653:A:T	rs1529803	A	T	T	Sox3.mouse_HMG_3	1	1	-	5.482310371678722	8.452387179867817	TTTGAATTTTAGTCTTT
chr12	83476465	83476466	chr12:83476466:T:C	rs3112104	T	C	C	Sox3.mouse_HMG_3	14	1	-	2.051429625837273	-4.330516540589637	GATAAATCCTATTCACA
chr12	83705258	83705259	chr12:83705259:T:C	rs6539778	T	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr12	84330660	84330661	chr12:84330661:C:T	rs73160431	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr12	84357650	84357651	chr12:84357651:A:G	rs9669137	A	G	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr12	84498840	84498841	chr12:84498841:A:C	rs2468284	A	C	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr12	84502852	84502853	chr12:84502853:C:A	rs7954812	C	A	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr12	84502883	84502884	chr12:84502884:T:C	rs7972407	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.091024317961785	-1.0091056184755078	GATGGATTTCACTCAGA
chr12	84526349	84526350	chr12:84526350:A:G	rs1903189	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr12	84582865	84582866	chr12:84582866:A:G	rs12312284	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr12	85036932	85036933	chr12:85036933:A:G	rs75142967	A	G	A	Sox3.mouse_HMG_3	15	1	-	3.3600364494418606	-1.354356962273208	TATGACGTGCAGTCATG
chr12	85424805	85424806	chr12:85424806:C:T	rs572929391	C	T	C	Sox3.mouse_HMG_3	0	1	+	7.356422231843863	8.81129287718073	CTTGCATGCTATTCATA
chr12	85424831	85424832	chr12:85424832:G:A	rs114792562	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr12	85618586	85618587	chr12:85618587:G:T	rs11116932	G	T	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr12	85641744	85641745	chr12:85641745:G:A	rs11835161	G	A	A	Sox3.mouse_HMG_3	8	1	+	1.0836518842825158	0.4605352371047027	GATGAATGGAAGTCCAC
chr12	86275437	86275438	chr12:86275438:T:C	rs7312237	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr12	87112867	87112868	chr12:87112868:T:C	rs73197878	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr12	87113132	87113133	chr12:87113133:G:A	rs2053091	G	A	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr12	87157695	87157696	chr12:87157696:G:A	rs17605515	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr12	87337112	87337113	chr12:87337113:T:C	rs78000293	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr12	87793054	87793055	chr12:87793055:A:C	rs2253566	A	C	.	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr12	87814307	87814308	chr12:87814308:T:G	rs2708018	T	G	T	Sox3.mouse_HMG_3	3	1	-	4.4410554874738715	3.473129639298053	TATAAATTGTTTTCATT
chr12	89135214	89135215	chr12:89135215:G:A	rs7138825	G	A	G	Sox3.mouse_HMG_3	8	1	-	3.580719979082593	3.318600234166487	AACGGATGCCAGTCATG
chr12	89350158	89350159	chr12:89350159:G:C	rs704077	G	C	G	Sox3.mouse_HMG_3	12	1	-	3.8954193502704584	3.707198071349315	GCTGAATGTTATCCAGT
chr12	89386159	89386160	chr12:89386160:T:A	rs7135819	T	A	T	Sox3.mouse_HMG_3	12	1	+	5.034840139444494	-1.0779707202827358	TATGAAATACAGTCAGT
chr12	89468252	89468253	chr12:89468253:G:T	rs12228177	G	T	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr12	89495012	89495013	chr12:89495013:T:C	rs2052828	T	C	t	Sox3.mouse_HMG_3	14	1	-	1.6797317014518538	-4.702214464975057	GCTGTATGACAGTCACA
chr12	89537415	89537416	chr12:89537416:T:G	rs1492913	T	G	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr12	89544252	89544253	chr12:89544253:G:A	rs4842664	G	A	G	Sox3.mouse_HMG_3	9	1	-	2.0960406428759426	2.1036773198676886	AATCAATGGCAGACATC
chr12	89636370	89636371	chr12:89636371:C:G	rs73196675	C	G	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr12	89668884	89668885	chr12:89668885:A:G	rs17782841	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr12	89678378	89678379	chr12:89678379:G:T	rs12310846	G	T	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr12	89762967	89762968	chr12:89762968:T:C	rs67026445	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr12	89762981	89762982	chr12:89762982:T:C	rs77749533	T	C	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr12	89894322	89894323	chr12:89894323:C:T	rs17017294	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	90360549	90360550	chr12:90360550:T:G	rs1897382	T	G	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr12	90368362	90368363	chr12:90368363:C:T	rs826210	C	T	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr12	90450012	90450013	chr12:90450013:T:C	rs704135	T	C	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr12	90959491	90959492	chr12:90959492:A:G	rs7961052	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr12	91343467	91343468	chr12:91343468:C:G	rs7295998	C	G	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr12	91349699	91349700	chr12:91349700:T:C	rs17193599	T	C	c	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr12	91383166	91383167	chr12:91383167:C:T	rs11106125	C	T	c	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr12	91609330	91609331	chr12:91609331:G:A	rs2130401	G	A	A	Sox3.mouse_HMG_3	15	1	+	2.5067786238764898	3.3655599707329102	GAAGAATGATATACAGT
chr12	91804432	91804433	chr12:91804433:G:A	rs78165207	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	91874345	91874346	chr12:91874346:T:A	rs73210808	T	A	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr12	91914514	91914515	chr12:91914515:C:T	rs115809172	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr12	91914528	91914529	chr12:91914529:T:C	rs4463881	T	C	C	Sox3.mouse_HMG_3	14	1	-	1.83910803037258	-4.542838136054332	CCTGAAATCCAGTCATC
chr12	91966062	91966063	chr12:91966063:G:A	rs7132890	G	A	G	Sox3.mouse_HMG_3	15	1	+	5.463133552926531	6.321914899782952	GGTGAATTATACTCAGA
chr12	92003592	92003593	chr12:92003593:T:C	rs4567507	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.8999321806804168	-4.705946937550514	AATGTATTCCATTAAAG
chr12	92416278	92416279	chr12:92416279:A:G	rs1473297	A	G	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr12	92425362	92425363	chr12:92425363:A:C	rs1515563	A	C	C	Sox3.mouse_HMG_3	12	1	-	4.653445595782572	-1.727629250539338	GATAAAAGATAGTCATA
chr12	92437061	92437062	chr12:92437062:G:A	rs170910	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr12	92465498	92465499	chr12:92465499:A:C	rs79638924	A	C	A	Sox3.mouse_HMG_3	14	1	+	1.7034846245317354	-4.678461541895175	CGTAAATTGTACTCATA
chr12	92465510	92465511	chr12:92465511:A:G	rs510832	A	G	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr12	92501845	92501846	chr12:92501846:G:A	rs11106597	G	A	g	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr12	92537599	92537600	chr12:92537600:T:C	rs753400079	T	C	T	Sox3.mouse_HMG_3	16	1	-	1.784644576247442	1.8205850326999677	TGTGAGATGTATTCATA
chr12	92543548	92543549	chr12:92543549:A:G	rs76870561	A	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr12	92592759	92592760	chr12:92592760:A:G	rs55654693	A	G	A	Sox3.mouse_HMG_3	5	1	+	2.8640010749945466	-3.62483384707632	CACCAATTCCATTCATA
chr12	92654030	92654031	chr12:92654031:G:A	rs10777428	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr12	92733388	92733389	chr12:92733389:T:C	rs78821754	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr12	92735104	92735105	chr12:92735105:G:A	rs17194345	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr12	92771115	92771116	chr12:92771116:G:T	rs17790340	G	T	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr12	92771159	92771160	chr12:92771160:G:A	rs10507017	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr12	92884246	92884247	chr12:92884247:A:G	rs144093690	A	G	-	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr12	92884283	92884284	chr12:92884284:C:T	rs1809871	C	T	-	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr12	92908388	92908389	chr12:92908389:C:T	rs11610414	C	T	T	Sox3.mouse_HMG_3	16	1	-	5.240285834156192	5.204345377703667	CATGAAATGTATTCACG
chr12	93016066	93016067	chr12:93016067:G:A	rs10859402	G	A	G	Sox3.mouse_HMG_3	3	1	+	2.900551167302297	-2.8810137202269344	CACGAATGGCAGTGATG
chr12	93040191	93040192	chr12:93040192:C:T	rs34324972	C	T	C	Sox3.mouse_HMG_3	3	1	-	5.28444825004617	-0.4971166374830627	GAAGAAATACATTCATA
chr12	93352160	93352161	chr12:93352161:C:T	rs10859485	C	T	c	Sox3.mouse_HMG_3	10	1	-	2.7966586807007126	9.40460932224151	AATGAATTACGTTCTTT
chr12	93536965	93536966	chr12:93536966:T:C	rs151193140	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr12	93713935	93713936	chr12:93713936:C:T	rs10859561	C	T	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr12	93726955	93726956	chr12:93726956:G:A	rs10777536	G	A	A	Sox3.mouse_HMG_3	3	1	+	1.7507183916252	-4.03084649590403	TTTGTATTCCATTCCTG
chr12	93858253	93858254	chr12:93858254:C:T	rs77731959	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr12	93891779	93891780	chr12:93891780:C:A	rs7957728	C	A	a	Sox3.mouse_HMG_3	9	1	+	2.934349510041657	-3.1198691144666624	CTTGAATGCCGGTCAGA
chr12	93903554	93903555	chr12:93903555:A:G	rs10859612	A	G	a	Sox3.mouse_HMG_3	1	1	+	2.5886035028604635	-0.5115264335768301	TATTAATTATGGTCATG
chr12	93909019	93909020	chr12:93909020:G:A	rs58442937	G	A	g	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr12	93922676	93922677	chr12:93922677:A:G	rs191596665	A	G	A	Sox3.mouse_HMG_3	15	1	-	8.517712855721893	3.803319444006823	TTTGAATGTGAGTCATA
chr12	94092704	94092705	chr12:94092705:G:C	rs7959324	G	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr12	94092744	94092745	chr12:94092745:C:T	rs10859656	C	T	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr12	94112297	94112298	chr12:94112298:T:C	rs142278112	T	C	T	Sox3.mouse_HMG_3	11	1	+	0.6911312719754659	-5.393479554126479	AGTGAATGGGATCCAGG
chr12	94112321	94112322	chr12:94112322:C:T	rs9805021	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr12	94115452	94115453	chr12:94115453:G:A	rs7138421	G	A	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr12	94227281	94227282	chr12:94227282:T:C	rs2291333	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr12	94231441	94231442	chr12:94231442:G:A	rs11833491	G	A	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr12	94231460	94231461	chr12:94231461:A:G	rs11838129	A	G	A	Sox3.mouse_HMG_3	0	1	+	6.020985691305877	6.846269592452222	ATGGAATGCCATTCAAG
chr12	94309160	94309161	chr12:94309161:A:T	rs61927167	A	T	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr12	94706536	94706537	chr12:94706537:A:C	rs73228598	A	C	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr12	94706858	94706859	chr12:94706859:C:T	rs4237891	C	T	T	Sox3.mouse_HMG_3	8	1	+	1.1476011822985515	0.8854814373824456	CATGCATGCCACTCAGG
chr12	94743116	94743117	chr12:94743117:A:G	rs7306517	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr12	94750226	94750227	chr12:94750227:A:G	rs11107687	A	G	A	Sox3.mouse_HMG_3	12	1	-	1.3577471749285017	-4.835106392472266	CATGGATGCTTGTCATT
chr12	94769356	94769357	chr12:94769357:A:T	rs7134586	A	T	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr12	94769365	94769366	chr12:94769366:T:C	rs117605927	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr12	94803029	94803030	chr12:94803030:C:T	rs17252137	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr12	94813409	94813410	chr12:94813410:G:A	rs1594839	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr12	94941569	94941570	chr12:94941570:A:G	rs111965354	A	G	A	Sox3.mouse_HMG_3	14	1	+	1.8939214048121236	-4.488024761614788	GAAGATTTTCAGTCATC
chr12	94941571	94941572	chr12:94941572:C:T	rs138494899	C	T	C	Sox3.mouse_HMG_3	16	1	+	1.8939214048121236	2.7608481442844024	GAAGATTTTCAGTCATC
chr12	95097753	95097754	chr12:95097754:G:A	rs11107893	G	A	G	Sox3.mouse_HMG_3	11	1	-	3.814294226972206	9.898905053074152	AGTGAATGTTACTCACA
chr12	95246799	95246800	chr12:95246800:A:C	rs77758367	A	C	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr12	95429546	95429547	chr12:95429547:G:A	rs183978	G	A	G	Sox3.mouse_HMG_3	13	1	-	3.0863342947495678	-3.520926315712452	TAAAAATTCTATTCAGG
chr12	95521717	95521718	chr12:95521718:T:C	rs301006	T	C	C	Sox3.mouse_HMG_3	10	1	-	0.5079272416247937	-6.100023399916004	GATCACTTGCAGTCAGG
chr12	95612259	95612260	chr12:95612260:T:G	rs7961771	T	G	T	Sox3.mouse_HMG_3	0	1	-	5.324293329182884	4.425785731192608	AATTAATTATATTCACA
chr12	95733189	95733190	chr12:95733190:T:A	rs76318579	T	A	T	Sox3.mouse_HMG_3	1	1	-	3.653776404794332	0.6836995966052368	GATGAATGGTAATAAGA
chr12	95804481	95804482	chr12:95804482:A:T	rs10777739	A	T	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr12	95826605	95826606	chr12:95826606:G:C	rs567040163	G	C	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr12	95828408	95828409	chr12:95828409:G:A	rs7310140	G	A	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr12	95963456	95963457	chr12:95963457:A:G	rs7486464	A	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr12	95970920	95970921	chr12:95970921:A:G	rs10745745	A	G	A	Sox3.mouse_HMG_3	9	1	-	2.9368447115109175	2.92920803451917	CATGAATGCTATTTGTT
chr12	96170498	96170499	chr12:96170499:G:A	rs1467700025	G	A	G	Sox3.mouse_HMG_3	9	1	-	2.464589662812071	2.472226339803817	GATTAAATGCATTCAAA
chr12	96230341	96230342	chr12:96230342:G:A	rs9971896	G	A	g	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr12	96254960	96254961	chr12:96254961:G:A	rs71460333	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr12	96526318	96526319	chr12:96526319:A:G	rs7315637	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr12	96751855	96751856	chr12:96751856:T:C	rs10507080	T	C	T	Sox3.mouse_HMG_3	15	1	+	1.5421468350084633	-3.172246576706605	CGTGAGTGGCATGCATA
chr12	96930847	96930848	chr12:96930848:A:G	rs249568	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr12	97069519	97069520	chr12:97069520:A:T	rs1548967	A	T	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr12	97083047	97083048	chr12:97083048:C:T	rs73230233	C	T	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr12	97461848	97461849	chr12:97461849:C:T	rs12422835	C	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr12	97466813	97466814	chr12:97466814:G:A	rs79621919	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr12	97474355	97474356	chr12:97474356:G:A	rs11109049	G	A	G	Sox3.mouse_HMG_3	14	1	+	2.3270873849043143	8.709033551331224	TGTGAATGCCTTTCGTG
chr12	98402658	98402659	chr12:98402659:G:T	rs4522216	G	T	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr12	98418842	98418843	chr12:98418843:G:A	rs1053236742	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr12	98492234	98492235	chr12:98492235:G:C	rs11109499	G	C	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr12	98830819	98830820	chr12:98830820:C:A	rs145101026	C	A	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr12	99018094	99018095	chr12:99018095:T:C	rs61933365	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr12	99060006	99060007	chr12:99060007:C:T	rs61933369	C	T	C	Sox3.mouse_HMG_3	6	1	+	0.32893081885289077	6.936881460393689	CATGAACGGAAGTCAGG
chr12	99436967	99436968	chr12:99436968:T:C	rs11109842	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr12	99436989	99436990	chr12:99436990:G:C	rs12230011	G	C	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr12	99522310	99522311	chr12:99522311:A:T	rs10860455	A	T	t	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr12	99746190	99746191	chr12:99746191:A:G	rs10745867	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr12	99752978	99752979	chr12:99752979:T:C	rs10860508	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr12	99890561	99890562	chr12:99890562:G:A	rs11110089	G	A	G	Sox3.mouse_HMG_3	8	1	-	0.5651873419349656	0.30306759701885966	CATGAATGCGAGTGAGA
chr12	99960788	99960789	chr12:99960789:C:T	rs10507114	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr12	99982613	99982614	chr12:99982614:T:C	rs61941608	T	C	C	Sox3.mouse_HMG_3	6	1	+	1.138935312319307	-5.469015329221491	GATAAATTGCTTTCACA
chr12	100399200	100399201	chr12:100399201:T:C	rs943402	T	C	C	Sox3.mouse_HMG_3	14	1	-	7.62865359721907	1.2467074307921588	GTTGAATGGTATGCAAA
chr12	100576883	100576884	chr12:100576884:G:A	rs35714	G	A	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr12	100829881	100829882	chr12:100829882:T:C	rs11110540	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr12	100830375	100830376	chr12:100830376:G:A	rs10860642	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr12	100830402	100830403	chr12:100830403:C:T	rs115661249	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr12	100927627	100927628	chr12:100927628:G:A	rs657331	G	A	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr12	101092586	101092587	chr12:101092587:A:G	rs7306107	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr12	101207378	101207379	chr12:101207379:G:C	rs7137298	G	C	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr12	101227922	101227923	chr12:101227923:G:A	rs3914496	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr12	101302683	101302684	chr12:101302684:T:C	chr12:101302684:T:C	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr12	101582771	101582772	chr12:101582772:A:C	rs145724821	A	C	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	101759640	101759641	chr12:101759641:A:G	rs78535579	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr12	101759690	101759691	chr12:101759691:T:C	rs150487409	T	C	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr12	101902387	101902388	chr12:101902388:T:A	rs10778158	T	A	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr12	101916337	101916338	chr12:101916338:T:C	rs7978801	T	C	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr12	101925591	101925592	chr12:101925592:C:A	rs1203294983	C	A	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr12	101939504	101939505	chr12:101939505:G:A	rs66467657	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr12	102120181	102120182	chr12:102120182:T:C	rs548827009	T	C	T	Sox3.mouse_HMG_3	7	1	+	3.4061268598891608	-1.997284320088158	TTTGAACTGTATTCAGC
chr12	102120203	102120204	chr12:102120204:G:T	rs146932578	G	T	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr12	102120206	102120207	chr12:102120207:T:A	chr12:102120207:T:A	T	A	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr12	102406088	102406089	chr12:102406089:G:A	rs115268373	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr12	102543704	102543705	chr12:102543705:C:T	chr12:102543705:C:T	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr12	102677022	102677023	chr12:102677023:T:C	rs116859112	T	C	T	Sox3.mouse_HMG_3	11	1	+	-0.24059325302619672	-6.325204079128142	GATCAATGGCATGCGTG
chr12	103014026	103014027	chr12:103014027:G:A	rs34481973	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr12	103739576	103739577	chr12:103739577:G:A	rs4981029	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr12	103796220	103796221	chr12:103796221:C:T	rs10861105	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr12	103828125	103828126	chr12:103828126:T:C	rs17034662	T	C	C	Sox3.mouse_HMG_3	2	1	+	0.7912239839316189	-5.814655134299312	GGTGAGTTGCAGTGATG
chr12	103841672	103841673	chr12:103841673:T:C	rs376588871	T	C	T	Sox3.mouse_HMG_3	2	1	+	0.6011670319506563	-6.004712086280273	AATTAATGGCAGTCTGG
chr12	103850655	103850656	chr12:103850656:C:T	rs1370413	C	T	T	Sox3.mouse_HMG_3	15	1	-	1.624708093469172	2.4834894403255925	TCTGTATTGCAGTCAGT
chr12	103928365	103928366	chr12:103928366:T:C	rs1165677	T	C	C	Sox3.mouse_HMG_3	12	1	+	1.3657928184223356	-4.827060748978431	CATGAATTCCCATCATC
chr12	103966390	103966391	chr12:103966391:C:T	rs375464651	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr12	103966395	103966396	chr12:103966396:A:C	chr12:103966396:A:C	A	C	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr12	103991669	103991670	chr12:103991670:A:G	rs2583274	A	G	G	Sox3.mouse_HMG_3	9	1	-	6.525531156248168	6.517894479256422	TTTGATTTATAGTCATG
chr12	104165998	104165999	chr12:104165999:G:A	rs59014318	G	A	G	Sox3.mouse_HMG_3	11	1	+	1.933484944699366	-2.716689781106772	AAAGAATGGCAGCCAGA
chr12	104220223	104220224	chr12:104220224:C:G	rs140072739	C	G	C	Sox3.mouse_HMG_3	16	1	-	0.6655016467011374	-1.3883546089761634	ACTGCATGTCAGTCACG
chr12	104263115	104263116	chr12:104263116:T:C	rs34199247	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr12	104304803	104304804	chr12:104304804:A:G	rs11111987	A	G	A	Sox3.mouse_HMG_3	15	1	+	3.9974384446333247	3.138657097776904	GATGAATGTTAACCAAA
chr12	104402711	104402712	chr12:104402712:G:T	rs59455817	G	T	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr12	104408040	104408041	chr12:104408041:T:C	rs10861216	T	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr12	104486229	104486230	chr12:104486230:A:C	rs61937673	A	C	A	Sox3.mouse_HMG_3	1	1	+	-0.4806830643975726	-4.657542578253468	GATGTATACCAGTCACG
chr12	104509015	104509016	chr12:104509016:A:G	rs2374399	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr12	104582782	104582783	chr12:104582783:C:T	rs313325	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr12	104864808	104864809	chr12:104864809:A:G	rs78999574	A	G	A	Sox3.mouse_HMG_3	1	1	+	1.9203693636041468	-1.179760572833144	TATGAATATTATGCAAT
chr12	105106643	105106644	chr12:105106644:T:A	rs9919746	T	A	T	Sox3.mouse_HMG_3	9	1	+	2.9076533237785513	-3.154201977721514	GAAGAATGCTCTTCAAT
chr12	105120701	105120702	chr12:105120702:A:G	rs1196837	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr12	105289503	105289504	chr12:105289504:T:A	rs4964355	T	A	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr12	105289504	105289505	chr12:105289505:A:C	rs4964356	A	C	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr12	105327193	105327194	chr12:105327194:A:G	rs11112468	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr12	105570065	105570066	chr12:105570066:G:A	rs1465027	G	A	A	Sox3.mouse_HMG_3	4	1	+	4.727561315238884	11.110378043232952	TATGGTTTCTATTCATG
chr12	105658754	105658755	chr12:105658755:C:T	rs2888868	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr12	105948345	105948346	chr12:105948346:T:C	rs61942471	T	C	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr12	106029945	106029946	chr12:106029946:T:G	rs547467397	T	G	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr12	106079641	106079642	chr12:106079642:C:T	rs12815216	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr12	106109291	106109292	chr12:106109292:C:T	rs2059769	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr12	106112710	106112711	chr12:106112711:C:T	rs12316899	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr12	106254063	106254064	chr12:106254064:C:T	rs12231439	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr12	106633512	106633513	chr12:106633513:A:C	rs12321311	A	C	a	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr12	106712767	106712768	chr12:106712768:G:A	rs10431462	G	A	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr12	107014358	107014359	chr12:107014359:G:A	rs75063577	G	A	G	Sox3.mouse_HMG_3	1	1	+	0.9909148750629297	4.091044811500222	GGTGAATGCTACTGATC
chr12	107014378	107014379	chr12:107014379:G:C	rs10746073	G	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr12	107059006	107059007	chr12:107059007:C:T	rs11113179	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr12	107308971	107308972	chr12:107308972:A:C	rs190880416	A	C	a	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr12	107363225	107363226	chr12:107363226:C:A	rs2162316	C	A	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	107373869	107373870	chr12:107373870:G:C	rs7959107	G	C	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr12	107396289	107396290	chr12:107396290:A:G	rs4964578	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr12	107468056	107468057	chr12:107468057:T:C	rs7979901	T	C	C	Sox3.mouse_HMG_3	7	1	+	1.3011209867594713	-4.102290193217848	GCTGAAATGCATCCATG
chr12	107546402	107546403	chr12:107546403:A:G	rs11832634	A	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr12	107885149	107885150	chr12:107885150:T:A	rs11113566	T	A	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr12	108118976	108118977	chr12:108118977:T:G	rs11113744	T	G	T	Sox3.mouse_HMG_3	10	1	-	1.9706470225493151	-4.7804044626321565	GGTGACTTACAATCATA
chr12	108271961	108271962	chr12:108271962:T:C	rs11113796	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr12	108352762	108352763	chr12:108352763:G:T	rs10778628	G	T	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr12	108457878	108457879	chr12:108457879:C:T	rs11113898	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr12	108569916	108569917	chr12:108569917:A:G	rs10778649	A	G	A	Sox3.mouse_HMG_3	8	1	-	2.916590742492546	3.178710487408652	GATGAATGTTTTTTAAA
chr12	108745989	108745990	chr12:108745990:A:G	rs113364206	A	G	A	Sox3.mouse_HMG_3	1	1	+	3.177932497466843	0.07780256102955052	CATGCATGGTAGCCATG
chr12	108822918	108822919	chr12:108822919:C:T	rs78850776	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr12	109095261	109095262	chr12:109095262:C:T	rs1642030	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr12	109142858	109142859	chr12:109142859:G:A	rs2003590	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr12	109244174	109244175	chr12:109244175:G:A	rs914313493	G	A	G	Sox3.mouse_HMG_3	10	1	+	8.115437369125427	14.723388010666227	AGTGAATGACGTTCATG
chr12	109285108	109285109	chr12:109285109:C:T	rs143889865	C	T	-	Sox3.mouse_HMG_3	13	1	+	-0.9609086477935016	-7.568169258255522	GGTGGATGGCAGCCAGG
chr12	109423648	109423649	chr12:109423649:G:C	rs10850134	G	C	C	Sox3.mouse_HMG_3	11	1	+	0.9698731218629937	-3.680301603943144	TATGAACTTCAGTCCTC
chr12	109463150	109463151	chr12:109463151:C:T	rs558420570	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr12	109470278	109470279	chr12:109470279:G:C	rs4766474	G	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr12	109519326	109519327	chr12:109519327:G:A	rs73196282	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr12	109698468	109698469	chr12:109698469:C:G	rs735465	C	G	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr12	109724973	109724974	chr12:109724974:G:A	rs113636226	G	A	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr12	109738455	109738456	chr12:109738456:G:A	rs7973101	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr12	109745979	109745980	chr12:109745980:C:T	rs4766629	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr12	110180706	110180707	chr12:110180707:A:T	rs7299230	A	T	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr12	110241918	110241919	chr12:110241919:C:T	rs575612021	C	T	C	Sox3.mouse_HMG_3	13	1	+	0.4510540882894787	-6.156206522172542	CATGAAAGATGTTCAGG
chr12	110317096	110317097	chr12:110317097:C:T	rs76890228	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr12	110583970	110583971	chr12:110583971:C:T	rs117422518	C	T	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr12	110583986	110583987	chr12:110583987:T:C	rs370638830	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr12	110588814	110588815	chr12:110588815:C:T	rs12813324	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr12	110744439	110744440	chr12:110744440:G:A	rs9795788	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr12	111895855	111895856	chr12:111895856:C:A	rs4766705	C	A	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr12	111902929	111902930	chr12:111902930:A:G	rs12319165	A	G	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr12	112025491	112025492	chr12:112025492:A:G	rs4767293	A	G	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr12	112154891	112154892	chr12:112154892:C:G	rs191791355	C	G	C	Sox3.mouse_HMG_3	7	1	-	3.6578454343255533	-2.595598687881836	AATAAAGGGTATTCAAG
chr12	112209967	112209968	chr12:112209968:T:C	rs11611847	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.9002202231844567	-0.19990971325283657	CATGAATGTTATGAATT
chr12	112306829	112306830	chr12:112306830:T:C	rs1989949	T	C	.	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr12	112503766	112503767	chr12:112503767:G:A	rs7953150	G	A	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr12	112590624	112590625	chr12:112590625:G:A	rs67436553	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr12	112851147	112851148	chr12:112851148:G:T	rs4767018	G	T	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr12	113051739	113051740	chr12:113051740:G:A	rs55798985	G	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr12	113111912	113111913	chr12:113111913:A:T	rs73207018	A	T	A	Sox3.mouse_HMG_3	12	1	-	3.3523050810396566	-2.760505778687574	CAAGAATGATAGTAATA
chr12	113233257	113233258	chr12:113233258:T:G	chr12:113233258:T:G	T	G	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr12	113266945	113266946	chr12:113266946:T:C	rs61943609	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr12	113360035	113360036	chr12:113360036:C:T	rs73430145	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr12	113360049	113360050	chr12:113360050:T:C	rs73194888	T	C	T	Sox3.mouse_HMG_3	10	1	-	1.5042125026468003	-5.103738138893997	AATGGATGCCAGTAAAA
chr12	113727711	113727712	chr12:113727712:A:G	rs17473113	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr12	114362168	114362169	chr12:114362169:G:A	rs7312625	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr12	114431337	114431338	chr12:114431338:C:T	rs1248056	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr12	114740649	114740650	chr12:114740650:T:C	rs10744832	T	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr12	114841804	114841805	chr12:114841805:T:C	rs7978393	T	C	C	Sox3.mouse_HMG_3	2	1	+	0.7377598533991105	-5.8681192648318214	CTTGGTTTGCATTCATG
chr12	114934219	114934220	chr12:114934220:C:T	rs77877221	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr12	114974937	114974938	chr12:114974938:T:C	rs10744843	T	C	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr12	114981064	114981065	chr12:114981065:G:C	rs56363935	G	C	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr12	114999672	114999673	chr12:114999673:T:C	rs76140711	T	C	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr12	115011697	115011698	chr12:115011698:A:G	rs75101446	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr12	115137924	115137925	chr12:115137925:C:T	rs1828384	C	T	T	Sox3.mouse_HMG_3	0	1	+	0.9161928559740402	2.3710635013109056	CGTGAATTCAAGTCACA
chr12	115137943	115137944	chr12:115137944:T:A	rs67470234	T	A	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr12	115159023	115159024	chr12:115159024:G:A	rs182493925	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr12	115233969	115233970	chr12:115233970:A:G	rs11067488	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr12	115244571	115244572	chr12:115244572:A:G	rs185607179	A	G	A	Sox3.mouse_HMG_3	8	1	+	3.587744547504731	4.210861194682545	GTTGAAGGAGATTCATG
chr12	115351521	115351522	chr12:115351522:T:C	rs4767312	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr12	115709071	115709072	chr12:115709072:T:C	rs56999756	T	C	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr12	115942216	115942217	chr12:115942217:C:T	rs3843652	C	T	T	Sox3.mouse_HMG_3	13	1	+	1.3861091322189858	-5.2211514782430335	GATGAATGCTTTTCTAC
chr12	116003295	116003296	chr12:116003296:T:A	rs536646627	T	A	T	Sox3.mouse_HMG_3	7	1	+	7.048154493830204	1.3446387214025475	AGTGAATTTTTTTCATG
chr12	116043860	116043861	chr12:116043861:A:G	rs1895625	A	G	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr12	116320741	116320742	chr12:116320742:A:G	rs16946565	A	G	A	Sox3.mouse_HMG_3	2	1	-	1.6145637174258067	-4.9913154008051235	TTTGCATTCTATTAATG
chr12	116330228	116330229	chr12:116330229:C:T	rs1467158	C	T	C	Sox3.mouse_HMG_3	6	1	-	1.4894014650600431	1.4894014650600431	TTTTAAGTGCATTCATA
chr12	116375169	116375170	chr12:116375170:A:T	rs7486948	A	T	-	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr12	116498757	116498758	chr12:116498758:T:G	rs2707201	T	G	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr12	116529864	116529865	chr12:116529865:A:C	rs11068059	A	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr12	116594140	116594141	chr12:116594141:A:G	rs7314617	A	G	A	Sox3.mouse_HMG_3	16	1	+	3.0531567620066946	3.0890972184592203	AATAAATGTCATTTAAA
chr12	116817991	116817992	chr12:116817992:G:A	rs80067286	G	A	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr12	116892426	116892427	chr12:116892427:G:A	rs73395528	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr12	117102849	117102850	chr12:117102850:G:A	rs11068337	G	A	G	Sox3.mouse_HMG_3	15	1	-	3.3423282901688736	8.056721701883943	TATGAATTGCGGTCACC
chr12	117128826	117128827	chr12:117128827:G:A	rs10850767	G	A	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr12	117151363	117151364	chr12:117151364:G:A	rs12322862	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr12	117356194	117356195	chr12:117356195:G:A	rs35097914	G	A	G	Sox3.mouse_HMG_3	7	1	+	2.494269170608045	-4.0592795440496845	TATGAATGACATGCTGG
chr12	117358075	117358076	chr12:117358076:G:A	rs3782221	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr12	117487304	117487305	chr12:117487305:G:A	rs60619587	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr12	117661959	117661960	chr12:117661960:C:T	rs6490143	C	T	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr12	118339165	118339166	chr12:118339166:T:G	rs61943365	T	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr12	118377951	118377952	chr12:118377952:C:T	rs111670795	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr12	118377982	118377983	chr12:118377983:T:C	rs148691852	T	C	T	Sox3.mouse_HMG_3	11	1	+	3.2167787059141437	-2.867832120187801	TATGCATGACATACAAA
chr12	118436164	118436165	chr12:118436165:G:T	rs142859849	G	T	G	Sox3.mouse_HMG_3	13	1	-	1.9373745488846037	-4.445262125092772	CATGTATGGCAGTCTTT
chr12	118436169	118436170	chr12:118436170:C:A	rs958768794	C	A	C	Sox3.mouse_HMG_3	8	1	-	1.9373745488846037	1.2324721352905663	CATGTATGGCAGTCTTT
chr12	118901523	118901524	chr12:118901524:G:A	rs11069159	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr12	118993414	118993415	chr12:118993415:A:G	rs35995108	A	G	A	Sox3.mouse_HMG_3	14	1	-	3.1363400328457747	3.1363400328457747	GAGGAATGTCATTCTAA
chr12	119091445	119091446	chr12:119091446:T:C	rs73211889	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr12	119122694	119122695	chr12:119122695:A:G	rs10774486	A	G	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr12	119379422	119379423	chr12:119379423:T:C	rs10849649	T	C	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr12	119602461	119602462	chr12:119602462:T:G	rs7954674	T	G	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr12	119684999	119685000	chr12:119685000:C:T	rs175878	C	T	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr12	119974491	119974492	chr12:119974492:G:C	rs1256074487	G	C	G	Sox3.mouse_HMG_3	15	1	+	4.24453243671544	2.6527298360936133	GTTGAATTTCATCCAGT
chr12	120289776	120289777	chr12:120289777:G:A	rs2701630	G	A	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr12	120398545	120398546	chr12:120398546:T:A	rs206970	T	A	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr12	120854900	120854901	chr12:120854901:T:C	rs12831094	T	C	T	Sox3.mouse_HMG_3	0	1	+	2.60213638121986	1.1472657358829952	TATTTATGACATTCAAG
chr12	120905869	120905870	chr12:120905870:T:C	rs1732399	T	C	c	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr12	121050568	121050569	chr12:121050569:G:C	rs2258844	G	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr12	121167146	121167147	chr12:121167147:A:G	rs12299020	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr12	121393719	121393720	chr12:121393720:A:T	rs58290222	A	T	t	Sox3.mouse_HMG_3	12	1	+	2.038895524789269	8.151706384516498	CATGAGTTACAGACATG
chr12	121465902	121465903	chr12:121465903:G:T	rs76102173	G	T	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr12	121477004	121477005	chr12:121477005:T:A	rs4980986	T	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr12	121693561	121693562	chr12:121693562:G:A	rs2954112	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr12	121719199	121719200	chr12:121719200:G:C	rs884884	G	C	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr12	121958898	121958899	chr12:121958899:A:G	rs78630645	A	G	A	Sox3.mouse_HMG_3	15	1	-	3.6764100463347322	-1.0379833653803359	AAAGGATTACATTCATT
chr12	122063730	122063731	chr12:122063731:G:A	rs116182070	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr12	122114393	122114394	chr12:122114394:T:C	rs28450064	T	C	T	Sox3.mouse_HMG_3	15	1	+	4.646352303046856	-0.06804110866821178	AAAGTATTATATTCATG
chr12	122152329	122152330	chr12:122152330:T:C	rs2137200	T	C	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr12	122186924	122186925	chr12:122186925:C:G	rs12424694	C	G	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr12	122464097	122464098	chr12:122464098:G:A	rs147716385	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr12	122517189	122517190	chr12:122517190:G:A	rs1599748	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr12	122887818	122887819	chr12:122887819:C:T	chr12:122887819:C:T	C	T	c	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr12	122894228	122894229	chr12:122894229:A:G	chr12:122894229:A:G	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr12	123130265	123130266	chr12:123130266:G:C	rs2510885	G	C	G	Sox3.mouse_HMG_3	11	1	+	3.248863291087024	-1.4013114347191136	TATGGATTTCAGTCCTG
chr12	123526592	123526593	chr12:123526593:A:T	rs28535724	A	T	A	Sox3.mouse_HMG_3	9	1	-	4.006750673109612	-2.0551046283904544	GATGAATTGTAGGGATG
chr12	123548271	123548272	chr12:123548272:A:G	rs5027860	A	G	g	Sox3.mouse_HMG_3	16	1	+	2.344434927029079	2.3803753834816046	TAGGAAGGGCATTCAGA
chr12	123717014	123717015	chr12:123717015:T:G	rs1028651205	T	G	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr12	123915713	123915714	chr12:123915714:T:C	rs10846577	T	C	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr12	123915730	123915731	chr12:123915731:C:T	rs10846578	C	T	C	Sox3.mouse_HMG_3	14	1	+	4.97504203386556	4.97504203386556	GCTGAATGATATTCCGG
chr12	124022083	124022084	chr12:124022084:T:C	rs10773049	T	C	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr12	124088327	124088328	chr12:124088328:C:T	rs568548098	C	T	c	Sox3.mouse_HMG_3	0	1	-	0.3597086470773472	-0.4655752540689988	GTTGTTTTCCAGTCATG
chr12	124234582	124234583	chr12:124234583:A:T	rs1363557388	A	T	A	Sox3.mouse_HMG_3	10	1	+	1.7314623699042209	-5.01958911527725	TATGAGTTTTATACAGG
chr12	124260076	124260077	chr12:124260077:T:G	rs7966873	T	G	G	Sox3.mouse_HMG_3	14	1	-	4.475291316286142	-1.906654850140769	GCTGAATAATATTCAAT
chr12	124260079	124260080	chr12:124260080:A:G	rs78626151	A	G	A	Sox3.mouse_HMG_3	11	1	-	4.475291316286142	-1.609319509815803	GCTGAATAATATTCAAT
chr12	124280356	124280357	chr12:124280357:T:C	rs1609939	T	C	C	Sox3.mouse_HMG_3	2	1	+	3.5514706131178464	-3.0544085051130834	TGTGATTGGCAGTCAGT
chr12	124551267	124551268	chr12:124551268:G:A	rs2049588	G	A	G	Sox3.mouse_HMG_3	3	1	+	4.39170138759272	-1.389863499936511	ACTGAATTATATACAAA
chr12	124714093	124714094	chr12:124714094:A:G	rs838926	A	G	g	Sox3.mouse_HMG_3	16	1	+	2.0283366759852184	2.064277132437744	TGTGAATGTCCTTAATA
chr12	125806794	125806795	chr12:125806795:A:G	rs11058342	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr12	126052236	126052237	chr12:126052237:A:G	rs7957629	A	G	G	Sox3.mouse_HMG_3	4	1	+	1.9693980056064928	-4.413418722387575	AATAAATGATAGTCTAG
chr12	126120974	126120975	chr12:126120975:G:A	rs12832941	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr12	126185332	126185333	chr12:126185333:A:G	rs10847112	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr12	126390281	126390282	chr12:126390282:A:G	rs11058623	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr12	126424891	126424892	chr12:126424892:A:G	rs60658183	A	G	A	Sox3.mouse_HMG_3	5	1	+	2.382617797075576	-4.10621712499529	TATGAATGTTATTATGA
chr12	126791240	126791241	chr12:126791241:C:T	rs2048502	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr12	126808000	126808001	chr12:126808001:A:C	rs7967965	A	C	c	Sox3.mouse_HMG_3	8	1	+	4.527313550131961	4.707647528631842	AAAGAATGACATTCTTT
chr12	127128440	127128441	chr12:127128441:T:C	rs2569821	T	C	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr12	127272883	127272884	chr12:127272884:C:T	rs137883665	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr12	127272895	127272896	chr12:127272896:T:A	rs11059052	T	A	T	Sox3.mouse_HMG_3	10	1	-	3.5510122880415933	-3.200039197139879	TATGACAGACAGTCATA
chr12	127602527	127602528	chr12:127602528:A:G	rs145112016	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr12	127606381	127606382	chr12:127606382:T:G	rs7955165	T	G	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr12	127606449	127606450	chr12:127606450:C:T	rs11059276	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr12	127774702	127774703	chr12:127774703:T:C	rs7957747	T	C	T	Sox3.mouse_HMG_3	2	1	+	7.100627355442732	0.4947482372118006	GATGAATTATAGACAGA
chr12	128069489	128069490	chr12:128069490:A:G	rs10744356	A	G	A	Sox3.mouse_HMG_3	9	1	-	3.9624537557945017	3.954817078802754	TATGAATTGTAGGAATG
chr12	128259666	128259667	chr12:128259667:A:G	rs10847586	A	G	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr12	128500032	128500033	chr12:128500033:G:C	rs11608385	G	C	C	Sox3.mouse_HMG_3	16	1	-	5.349707872413365	7.403564128090666	TATGAATGCTAGTGAGC
chr12	128586002	128586003	chr12:128586003:A:G	rs4882791	A	G	G	Sox3.mouse_HMG_3	14	1	+	4.752244090140983	-1.6297020762859278	CATGAATGTGCTTCATG
chr12	128586006	128586007	chr12:128586007:T:C	rs968195	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr12	128755179	128755180	chr12:128755180:G:C	rs7965934	G	C	C	Sox3.mouse_HMG_3	3	1	+	1.8734418246446436	-4.876048911060406	ATTGAGTGTTATGCATA
chr12	128799072	128799073	chr12:128799073:C:A	rs541089091	C	A	C	Sox3.mouse_HMG_3	7	1	-	1.0741707354672918	0.22413779323722038	CATGAACGGTTTTCAGG
chr12	128800355	128800356	chr12:128800356:C:T	rs4760591	C	T	T	Sox3.mouse_HMG_3	0	1	-	2.6279974893030653	1.8027135881567207	GATGAGTGATATGCAGA
chr12	128805086	128805087	chr12:128805087:T:C	rs11059920	T	C	T	Sox3.mouse_HMG_3	16	1	-	2.750186586065434	2.78612704251796	CATGTATTTTATTTATA
chr12	128960042	128960043	chr12:128960043:T:C	rs470477	T	C	c	Sox3.mouse_HMG_3	1	1	-	2.254984511344488	-0.8451454250928035	AATGATTTGCAGACATT
chr12	128997053	128997054	chr12:128997054:T:G	rs470609	T	G	t	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr12	129119754	129119755	chr12:129119755:A:G	rs10734967	A	G	G	Sox3.mouse_HMG_3	1	1	+	3.132992116203066	0.032862179765772215	CATGAATGGTAGGGATG
chr12	129211047	129211048	chr12:129211048:G:A	rs757847683	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr12	129242039	129242040	chr12:129242040:C:T	rs58784471	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr12	129561395	129561396	chr12:129561396:C:T	rs1430244673	C	T	C	Sox3.mouse_HMG_3	2	1	+	3.3793256357115764	9.985204753942508	AACTAATTTCATTCATG
chr12	129574606	129574607	chr12:129574607:T:G	rs155688	T	G	T	Sox3.mouse_HMG_3	2	1	+	2.2686860537958387	-4.4802939080757636	TATGAATGCCCTTCTGA
chr12	129574632	129574633	chr12:129574633:G:A	rs77265977	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr12	129676155	129676156	chr12:129676156:G:A	rs142386984	G	A	G	Sox3.mouse_HMG_3	0	1	+	1.4150923518316896	0.5898084506853459	GCTGAATTTCAGGCAGT
chr12	129676190	129676191	chr12:129676191:A:T	rs11060492	A	T	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr12	129750767	129750768	chr12:129750768:G:A	rs35604986	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr12	129845361	129845362	chr12:129845362:G:A	rs140131923	G	A	g	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr12	129967092	129967093	chr12:129967093:C:T	rs111792425	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr12	130128843	130128844	chr12:130128844:A:T	rs1962384	A	T	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr12	130212850	130212851	chr12:130212851:G:A	rs7315588	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr12	130332091	130332092	chr12:130332092:G:A	rs2398510	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr12	130429538	130429539	chr12:130429539:C:G	rs12425909	C	G	C	Sox3.mouse_HMG_3	0	1	-	9.137471985863778	7.4136804867271575	GATGTATTACATTCATC
chr12	130537319	130537320	chr12:130537320:G:A	rs12424036	G	A	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr12	130626691	130626692	chr12:130626692:A:G	rs12425929	A	G	-	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr12	130847429	130847430	chr12:130847430:A:G	rs115376392	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr12	131029017	131029018	chr12:131029018:A:G	rs1195891	A	G	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr12	131029052	131029053	chr12:131029053:G:A	rs147766977	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr12	131092047	131092048	chr12:131092048:G:A	rs7311928	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr12	131092084	131092085	chr12:131092085:A:G	rs34507968	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr12	131145077	131145078	chr12:131145078:T:G	rs10773849	T	G	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr12	131399752	131399753	chr12:131399753:A:G	rs12311534	A	G	N	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr12	131653481	131653482	chr12:131653482:G:A	rs7301681	G	A	g	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr12	131761435	131761436	chr12:131761436:G:C	rs10794425	G	C	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr12	131784126	131784127	chr12:131784127:G:A	rs906041183	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr12	131893391	131893392	chr12:131893392:G:A	rs76662049	G	A	G	Sox3.mouse_HMG_3	1	1	+	0.2962583180147218	3.396388254452013	GGTGAAAGCCATTCCAA
chr12	131893418	131893419	chr12:131893419:C:T	rs10794446	C	T	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr12	131985536	131985537	chr12:131985537:G:C	rs557234733	G	C	G	Sox3.mouse_HMG_3	1	1	+	2.1089437563947997	1.0322141789761967	TGTGAATTTAAGTCACA
chr12	132057468	132057469	chr12:132057469:A:G	rs4027	A	G	G	Sox3.mouse_HMG_3	16	1	+	1.1195661048177963	1.155506561270322	GATGAATGATTGCCAGA
chr12	132075568	132075569	chr12:132075569:G:A	rs76010850	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr12	132289096	132289097	chr12:132289097:G:A	rs75237016	G	A	G	Sox3.mouse_HMG_3	11	1	+	6.137000190172753	1.4868254643666143	CGTGAATCACAGTCATG
chr12	132289102	132289103	chr12:132289103:C:T	rs28433145	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr12	132372415	132372416	chr12:132372416:G:A	rs115395387	G	A	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr12	132438451	132438452	chr12:132438452:C:T	rs4883600	C	T	t	Sox3.mouse_HMG_3	15	1	+	3.0577513497254993	7.772144761440568	AATGAATGCTTGTCACC
chr12	132492547	132492548	chr12:132492548:G:A	rs1882297	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr12	132492552	132492553	chr12:132492553:G:T	rs11147223	G	T	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr12	132666208	132666209	chr12:132666209:G:A	rs4883579	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr12	132673855	132673856	chr12:132673856:A:G	rs5744774	A	G	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr12	132773033	132773034	chr12:132773034:C:G	rs3741483	C	G	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr12	132828291	132828292	chr12:132828292:A:C	rs984973495	A	C	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr12	133152539	133152540	chr12:133152540:A:G	rs7307021	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr13	16659843	16659844	chr13:16659844:C:A	rs1442034877	C	A	.	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr13	19056146	19056147	chr13:19056147:T:C	rs61944512	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr13	19177713	19177714	chr13:19177714:A:G	rs36215763	A	G	A	Sox3.mouse_HMG_3	11	1	+	3.188898220946603	7.839072946752742	TATGGATTCCAATCATC
chr13	19267858	19267859	chr13:19267859:C:G	rs7994436	C	G	C	Sox3.mouse_HMG_3	0	1	+	3.590209593808384	5.314001092945002	CATGAATTCAAGTCAGC
chr13	19663436	19663437	chr13:19663437:T:C	rs17085415	T	C	C	Sox3.mouse_HMG_3	6	1	+	3.891457030373302	-2.716493611167497	CCTAAATGGCAGTCAAG
chr13	20122031	20122032	chr13:20122032:A:C	rs4338639	A	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr13	20159560	20159561	chr13:20159561:T:C	rs7320129	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr13	20190675	20190676	chr13:20190676:T:C	rs74035964	T	C	C	Sox3.mouse_HMG_3	6	1	+	2.4080970268507422	-4.1998536146900545	TGTGAATTGTCTTCACT
chr13	20482161	20482162	chr13:20482162:T:G	rs7986974	T	G	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr13	20617690	20617691	chr13:20617691:C:G	rs192415879	C	G	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr13	20711766	20711767	chr13:20711767:C:G	rs1888001	C	G	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr13	20975998	20975999	chr13:20975999:C:T	rs555919	C	T	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr13	20982467	20982468	chr13:20982468:G:A	rs9552316	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr13	21121919	21121920	chr13:21121920:T:C	rs9509556	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr13	21121963	21121964	chr13:21121964:C:T	rs9509557	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr13	21293490	21293491	chr13:21293491:C:G	rs3814799	C	G	.	Sox3.mouse_HMG_3	8	1	+	2.754227089417445	3.197009758095377	TAAGAATTCCAGTGATT
chr13	21322703	21322704	chr13:21322704:A:G	rs35811168	A	G	A	Sox3.mouse_HMG_3	0	1	+	2.430568231299545	3.25585213244589	ATCGAATTTCAGTCAAT
chr13	21322732	21322733	chr13:21322733:C:T	rs35469769	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr13	22061272	22061273	chr13:22061273:T:C	rs2146681	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr13	22078390	22078391	chr13:22078391:A:G	rs77030195	A	G	A	Sox3.mouse_HMG_3	5	1	+	4.261727380935594	-2.2271075411352697	GATAAATGGCAGTTATT
chr13	22272223	22272224	chr13:22272224:A:C	rs1275317911	A	C	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr13	22893230	22893231	chr13:22893231:G:A	rs2335558	G	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr13	22893252	22893253	chr13:22893253:A:G	rs74037475	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr13	22928148	22928149	chr13:22928149:A:G	rs4045387	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.3408368510010917	-5.267113790539706	GGTGCATTACATTGATG
chr13	23060998	23060999	chr13:23060999:A:T	rs9552811	A	T	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr13	23065740	23065741	chr13:23065741:C:T	rs9550903	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr13	23427269	23427270	chr13:23427270:C:T	rs4770446	C	T	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr13	23488370	23488371	chr13:23488371:A:G	rs4770454	A	G	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr13	23516317	23516318	chr13:23516318:C:T	rs7334346	C	T	C	Sox3.mouse_HMG_3	3	1	-	4.132687649826157	-1.6488772377030734	AATGAATGCTAATGATT
chr13	23570261	23570262	chr13:23570262:A:G	rs7320774	A	G	G	Sox3.mouse_HMG_3	15	1	-	1.117828557074867	-3.596564854640201	GCTGATTTCTAATCATG
chr13	23833157	23833158	chr13:23833158:T:C	rs2312560	T	C	T	Sox3.mouse_HMG_3	15	1	-	2.607070115848236	1.7482887689918156	AATAAATGGCATTTAAT
chr13	23898442	23898443	chr13:23898443:G:A	rs35449605	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr13	23898575	23898576	chr13:23898576:G:A	rs112214548	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr13	23939852	23939853	chr13:23939853:G:A	rs151030266	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr13	23958140	23958141	chr13:23958141:T:C	rs142907982	T	C	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr13	24068659	24068660	chr13:24068660:C:T	rs2862248	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr13	24124979	24124980	chr13:24124980:T:C	rs1923909	T	C	C	Sox3.mouse_HMG_3	1	1	-	1.9793801745958088	-1.1207497618414823	TATGAATGAGTTTCAGT
chr13	24219677	24219678	chr13:24219678:C:T	rs6490887	C	T	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr13	24298570	24298571	chr13:24298571:G:A	rs73455753	G	A	G	Sox3.mouse_HMG_3	3	1	+	5.690596151341213	-0.09096873618801848	GTTGAATGGAAGTCAGG
chr13	24599818	24599819	chr13:24599819:A:G	rs8001947	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr13	24664677	24664678	chr13:24664678:C:G	rs78132418	C	G	C	Sox3.mouse_HMG_3	11	1	-	5.508660727251952	0.8584860014458147	CTGGAATTGCAGTCATA
chr13	24664680	24664681	chr13:24664681:C:T	rs9553406	C	T	T	Sox3.mouse_HMG_3	8	1	-	5.508660727251952	4.885544080074139	CTGGAATTGCAGTCATA
chr13	24864411	24864412	chr13:24864412:C:T	rs17081286	C	T	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr13	25026355	25026356	chr13:25026356:C:T	rs79926283	C	T	.	Sox3.mouse_HMG_3	3	1	-	4.284974947971305	-1.4965899395579263	AATGAATGTTAACCATT
chr13	25026356	25026357	chr13:25026357:A:G	rs74040908	A	G	.	Sox3.mouse_HMG_3	2	1	-	4.284974947971305	-2.320904170259626	AATGAATGTTAACCATT
chr13	25113092	25113093	chr13:25113093:T:C	rs2994891	T	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr13	25422943	25422944	chr13:25422944:A:T	rs9553610	A	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr13	25657410	25657411	chr13:25657411:G:A	rs2419322	G	A	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr13	25731873	25731874	chr13:25731874:C:T	rs61947342	C	T	C	Sox3.mouse_HMG_3	13	1	+	2.4433160350209944	-4.163944575441026	CATTTATTTCATTCATA
chr13	26018535	26018536	chr13:26018536:G:A	rs9581506	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr13	26041723	26041724	chr13:26041724:C:A	rs184688215	C	A	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr13	26041759	26041760	chr13:26041760:A:G	rs538248335	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr13	26184768	26184769	chr13:26184769:A:G	rs77676730	A	G	a	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr13	26202997	26202998	chr13:26202998:T:G	rs564801	T	G	t	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr13	26459912	26459913	chr13:26459913:T:G	rs475300	T	G	T	Sox3.mouse_HMG_3	14	1	-	3.311406332800815	-3.0705398336260963	CATGAAATCCATCCATG
chr13	26494830	26494831	chr13:26494831:T:C	rs9553843	T	C	T	Sox3.mouse_HMG_3	1	1	+	4.386272623724338	3.1794899180575387	ATTGAATTTCACTCAAT
chr13	26556378	26556379	chr13:26556379:A:G	rs4769504	A	G	A	Sox3.mouse_HMG_3	14	1	+	2.3968822209128984	-3.985063945514012	AATGAAGGAAAGTCATT
chr13	26590062	26590063	chr13:26590063:A:G	rs113972298	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr13	26719984	26719985	chr13:26719985:C:T	rs9581728	C	T	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr13	27043121	27043122	chr13:27043122:T:C	rs116655998	T	C	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr13	27204044	27204045	chr13:27204045:C:G	rs143160023	C	G	C	Sox3.mouse_HMG_3	13	1	+	3.8772311577139376	-2.7300294527480817	ACTGAATTGAAGTCATC
chr13	27426842	27426843	chr13:27426843:A:G	rs2296072	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr13	27426858	27426859	chr13:27426859:A:G	rs2296071	A	G	A	Sox3.mouse_HMG_3	4	1	+	3.2082593126826113	-3.1745574153114555	TTTAAATGCTGTTCATG
chr13	27578329	27578330	chr13:27578330:T:C	rs7986743	T	C	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr13	27613834	27613835	chr13:27613835:T:G	rs79094069	T	G	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr13	28032131	28032132	chr13:28032132:T:G	rs9512989	T	G	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr13	28104350	28104351	chr13:28104351:G:T	rs4366576	G	T	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr13	28139844	28139845	chr13:28139845:G:A	rs115999587	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr13	28309199	28309200	chr13:28309200:A:G	rs7996030	A	G	C	Sox3.mouse_HMG_3	14	1	+	1.5932058583509197	-4.788740308075991	AGAGAATGCCAGACATA
chr13	28423479	28423480	chr13:28423480:G:T	chr13:28423480:G:T	G	T	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr13	28429985	28429986	chr13:28429986:G:C	rs55896954	G	C	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr13	28468083	28468084	chr13:28468084:A:T	rs685598	A	T	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr13	28534349	28534350	chr13:28534350:A:G	rs9551485	A	G	a	Sox3.mouse_HMG_3	11	1	-	7.243820438629313	1.1592096125273654	TATGAATTGTATTGAGT
chr13	28559718	28559719	chr13:28559719:T:C	rs56999442	T	C	C	Sox3.mouse_HMG_3	10	1	-	4.855041733667525	-1.7529089078732722	GATGGATGGTAGTGATG
chr13	28607573	28607574	chr13:28607574:T:C	rs7999898	T	C	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr13	28741521	28741522	chr13:28741522:G:C	rs1792048	G	C	G	Sox3.mouse_HMG_3	12	1	+	0.6440777503316741	0.8322990292528176	CATGAATGCCAGGCCAG
chr13	28769857	28769858	chr13:28769858:T:C	rs8001722	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr13	29004921	29004922	chr13:29004922:A:G	rs3858734	A	G	A	Sox3.mouse_HMG_3	0	1	-	2.9109673280091295	1.4560966826722654	TATGCATTTTATTTATT
chr13	29170169	29170170	chr13:29170170:G:A	rs7997835	G	A	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr13	29174929	29174930	chr13:29174930:C:G	rs989846	C	G	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr13	29204323	29204324	chr13:29204324:T:C	rs145943773	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr13	29439774	29439775	chr13:29439775:G:A	rs7995644	G	A	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr13	29460025	29460026	chr13:29460026:C:T	rs77241081	C	T	C	Sox3.mouse_HMG_3	7	1	-	5.892760645287713	-0.6607880693700172	TATGAATGATATACCTG
chr13	29693956	29693957	chr13:29693957:C:T	rs6490422	C	T	T	Sox3.mouse_HMG_3	16	1	-	4.398665066760178	4.3627246103076525	TTTGAATTTCAGGCAAG
chr13	29693981	29693982	chr13:29693982:G:T	rs6490423	G	T	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr13	29730427	29730428	chr13:29730428:C:T	rs2388242	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr13	29730451	29730452	chr13:29730452:G:A	rs12869874	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr13	29925871	29925872	chr13:29925872:T:G	rs9508593	T	G	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr13	29977144	29977145	chr13:29977145:T:C	rs12874334	T	C	T	Sox3.mouse_HMG_3	13	1	-	2.3665218747127534	2.1418979382281096	TATGAATGCCAGAAAAG
chr13	30064087	30064088	chr13:30064088:C:T	rs538015	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr13	30196622	30196623	chr13:30196623:A:G	rs6490446	A	G	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr13	30289950	30289951	chr13:30289951:G:A	rs9508696	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr13	30293990	30293991	chr13:30293991:T:C	rs9506282	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr13	30355402	30355403	chr13:30355403:C:G	rs190278569	C	G	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr13	30725338	30725339	chr13:30725339:G:C	rs9508829	G	C	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr13	30841935	30841936	chr13:30841936:T:C	rs34780238	T	C	T	Sox3.mouse_HMG_3	6	1	+	9.036122620595403	2.428171979054607	TATGAATTCTATTCTAA
chr13	30872658	30872659	chr13:30872659:G:A	rs146681123	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr13	30933589	30933590	chr13:30933590:G:T	rs1002036	G	T	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr13	31085653	31085654	chr13:31085654:G:A	rs932717	G	A	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr13	31247118	31247119	chr13:31247119:C:G	rs9542307	C	G	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr13	31254371	31254372	chr13:31254372:T:C	rs2313818	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr13	31378290	31378291	chr13:31378291:G:A	rs4941831	G	A	g	Sox3.mouse_HMG_3	7	1	+	1.4949751624512808	-5.058573552206446	AATGCTTGCTATTCAGA
chr13	31906085	31906086	chr13:31906086:G:A	rs9532803	G	A	G	Sox3.mouse_HMG_3	0	1	-	5.783003647901432	7.2378742932382965	CGTGACTGACAGTCATG
chr13	31966701	31966702	chr13:31966702:A:T	rs73165161	A	T	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr13	32166787	32166788	chr13:32166788:A:G	rs798978	A	G	A	Sox3.mouse_HMG_3	14	1	+	3.962011956305404	-2.4199342101215064	GGTGATTTCCATTCAGT
chr13	32285442	32285443	chr13:32285443:T:G	rs564641237	T	G	T	Sox3.mouse_HMG_3	4	1	-	2.3516366938877025	-4.398904814231683	GATGAATGCCAGTTCTC
chr13	32298039	32298040	chr13:32298040:C:T	rs206127	C	T	C	Sox3.mouse_HMG_3	16	1	-	3.8163776844261412	3.7804372279736156	TGGGAATGACATTCACG
chr13	32448420	32448421	chr13:32448421:C:A	rs60160878	C	A	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr13	32806886	32806887	chr13:32806887:T:A	rs4942923	T	A	T	Sox3.mouse_HMG_3	5	1	-	0.9951533920950237	-5.612287272383688	GGTGAAATGTAGACATA
chr13	32980963	32980964	chr13:32980964:C:T	rs118039500	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr13	33167880	33167881	chr13:33167881:T:C	rs2296390	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr13	33176382	33176383	chr13:33176383:A:G	rs797221	A	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr13	33188696	33188697	chr13:33188697:T:C	rs7335916	T	C	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr13	33474401	33474402	chr13:33474402:G:C	rs9537595	G	C	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr13	33633562	33633563	chr13:33633563:A:G	rs10507413	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.330144137853276	-0.7699857985840175	CATGAATGATTGGCATA
chr13	33721777	33721778	chr13:33721778:C:T	rs76248579	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr13	33721778	33721779	chr13:33721779:G:A	rs2321481	G	A	G	Sox3.mouse_HMG_3	16	1	-	1.7750596251930912	2.64198636466537	AAAGAATGTCTGTCATC
chr13	33910415	33910416	chr13:33910416:A:G	rs116008564	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr13	34045006	34045007	chr13:34045007:T:C	rs56056619	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr13	34143397	34143398	chr13:34143398:C:G	rs1014611	C	G	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr13	34175118	34175119	chr13:34175119:T:C	rs1415245	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr13	34362334	34362335	chr13:34362335:A:G	rs9540615	A	G	A	Sox3.mouse_HMG_3	4	1	+	2.7726661754325113	-3.6101505525615574	CATCAATGCCAGACATA
chr13	34513753	34513754	chr13:34513754:C:T	rs2322115	C	T	C	Sox3.mouse_HMG_3	4	1	+	4.073839742568765	4.216940586209438	CATGCATTTTATTCAGC
chr13	34591252	34591253	chr13:34591253:A:G	rs9599293	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.4736430422495737	-5.134307599291224	AATGCATTGCTGTCATT
chr13	35406022	35406023	chr13:35406023:T:G	rs9544265	T	G	g	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr13	35569205	35569206	chr13:35569206:A:C	rs1777664	A	C	A	Sox3.mouse_HMG_3	14	1	+	9.651845987116918	3.2698998206900054	TTTGAATGGCATGCATG
chr13	35748347	35748348	chr13:35748348:A:G	rs9545212	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr13	35748370	35748371	chr13:35748371:A:G	rs9545213	A	G	A	Sox3.mouse_HMG_3	14	1	+	2.3695473342730247	-4.012398832153886	TGTGAATGTTATCTATA
chr13	35833755	35833756	chr13:35833756:G:T	rs943222	G	T	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr13	35964273	35964274	chr13:35964274:G:A	rs1343184	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr13	36061172	36061173	chr13:36061173:C:A	rs9593728	C	A	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr13	36731050	36731051	chr13:36731051:C:T	rs12584589	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr13	37156175	37156176	chr13:37156176:A:G	rs73177052	A	G	-	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr13	37408500	37408501	chr13:37408501:T:C	rs1853328	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr13	37609364	37609365	chr13:37609365:A:G	rs1924298	A	G	A	Sox3.mouse_HMG_3	6	1	-	2.7388845669949653	-3.869066074545832	GATACATTGTATTCAGA
chr13	37617325	37617326	chr13:37617326:C:T	rs73454521	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr13	38012243	38012244	chr13:38012244:A:G	rs9532143	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr13	38422020	38422021	chr13:38422021:T:C	rs73176740	T	C	t	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr13	38752117	38752118	chr13:38752118:G:A	rs9576611	G	A	A	Sox3.mouse_HMG_3	1	1	+	1.508686735725492	4.608816672162785	AGTGTATGACATTGATG
chr13	38897663	38897664	chr13:38897664:C:T	rs9576637	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr13	38974158	38974159	chr13:38974159:G:T	rs9315643	G	T	G	Sox3.mouse_HMG_3	10	1	+	1.2976964982153594	1.154595654574687	GGTGAATGTTGTTCTTT
chr13	39263428	39263429	chr13:39263429:T:C	rs1930813	T	C	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr13	39274021	39274022	chr13:39274022:C:T	rs78099262	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr13	39406030	39406031	chr13:39406031:G:A	rs1927200	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr13	39410653	39410654	chr13:39410654:C:T	rs73173499	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr13	39563435	39563436	chr13:39563436:G:A	rs7985865	G	A	G	Sox3.mouse_HMG_3	13	1	-	2.319748369680189	-4.2875122407818305	CATGTATTCTAGTCACT
chr13	39563449	39563450	chr13:39563450:A:C	rs1268667974	A	C	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr13	39951337	39951338	chr13:39951338:G:T	rs9549017	G	T	T	Sox3.mouse_HMG_3	8	1	+	4.561993467379242	3.8570910537852043	GATAAACTGCAGTCATA
chr13	40432180	40432181	chr13:40432181:A:C	rs118063606	A	C	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr13	40458770	40458771	chr13:40458771:A:G	rs144035061	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr13	41569122	41569123	chr13:41569123:C:T	rs17594404	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr13	41569138	41569139	chr13:41569139:G:A	rs9566790	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr13	41877954	41877955	chr13:41877955:T:C	rs9566870	T	C	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr13	42065360	42065361	chr13:42065361:T:A	rs115757619	T	A	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr13	42763185	42763186	chr13:42763186:T:C	rs145890099	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr13	42784300	42784301	chr13:42784301:C:A	rs1853637	C	A	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr13	42877309	42877310	chr13:42877310:T:C	rs80092417	T	C	T	Sox3.mouse_HMG_3	5	1	-	3.6214931560865837	-2.867341765984281	GATGAATGGTTTTGAAA
chr13	42972126	42972127	chr13:42972127:C:G	rs9567079	C	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr13	42996716	42996717	chr13:42996717:C:T	rs140009595	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr13	42996750	42996751	chr13:42996751:A:C	rs9533338	A	C	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr13	43269904	43269905	chr13:43269905:T:C	rs2289776	T	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr13	43567885	43567886	chr13:43567886:T:C	rs4941462	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr13	43574864	43574865	chr13:43574865:T:A	rs181445726	T	A	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr13	43788089	43788090	chr13:43788090:T:C	rs77634831	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr13	44128732	44128733	chr13:44128733:T:A	rs9525916	T	A	T	Sox3.mouse_HMG_3	11	1	+	4.81918246920991	-1.2654283568920348	GAGGAATTCTATTAATA
chr13	44299279	44299280	chr13:44299280:C:T	rs1175207	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr13	44301590	44301591	chr13:44301591:T:A	rs11840336	T	A	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr13	44768316	44768317	chr13:44768317:C:T	rs1415641	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr13	44819857	44819858	chr13:44819858:T:C	rs17066190	T	C	T	Sox3.mouse_HMG_3	11	1	-	1.9065144345572727	6.55668916036341	TTGGAATTCCAATCATG
chr13	44921855	44921856	chr13:44921856:A:G	rs75276039	A	G	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr13	45021411	45021412	chr13:45021412:A:G	rs12584828	A	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr13	45219385	45219386	chr13:45219386:T:G	rs74070129	T	G	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr13	45313734	45313735	chr13:45313735:G:C	rs7325355	G	C	g	Sox3.mouse_HMG_3	4	1	+	1.8184380187205462	1.4507132385952282	AATGGATGTCATTCTGA
chr13	45662211	45662212	chr13:45662212:C:T	rs539973738	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr13	45737560	45737561	chr13:45737561:A:G	rs73189698	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr13	45882791	45882792	chr13:45882792:A:G	rs78074044	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr13	46102059	46102060	chr13:46102060:A:G	rs17067700	A	G	A	Sox3.mouse_HMG_3	4	1	-	3.017173824851865	2.874072981211192	GATGTATTGTTTTCATC
chr13	46154595	46154596	chr13:46154596:T:C	rs150679681	T	C	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr13	46184242	46184243	chr13:46184243:A:C	rs116327583	A	C	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr13	46184271	46184272	chr13:46184272:T:C	rs141919872	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr13	46531083	46531084	chr13:46531084:T:C	rs9534419	T	C	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr13	46531095	46531096	chr13:46531096:A:G	rs9534420	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr13	46552820	46552821	chr13:46552821:C:T	rs76346710	C	T	C	Sox3.mouse_HMG_3	8	1	+	2.2381465105710525	1.9760267656549466	TGTAAATCCCATTCATT
chr13	46594956	46594957	chr13:46594957:G:A	rs1570622	G	A	A	Sox3.mouse_HMG_3	9	1	-	4.358671043960074	4.36630772095182	GATGAAGTTCATTTATG
chr13	46687834	46687835	chr13:46687835:T:C	rs842375	T	C	t	Sox3.mouse_HMG_3	9	1	+	4.390844795280624	4.383208118288878	TATGATTGCTATTAATT
chr13	46758844	46758845	chr13:46758845:T:A	rs1216982	T	A	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr13	46867374	46867375	chr13:46867375:A:C	rs1328677	A	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr13	47069620	47069621	chr13:47069621:G:T	rs11148028	G	T	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr13	47186673	47186674	chr13:47186674:C:T	rs73178152	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr13	47299331	47299332	chr13:47299332:G:A	rs9534590	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr13	47299413	47299414	chr13:47299414:T:C	rs149460072	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr13	47415356	47415357	chr13:47415357:C:T	rs9943957	C	T	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr13	47457578	47457579	chr13:47457579:T:C	rs10220222	T	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr13	47629048	47629049	chr13:47629049:A:G	rs61954664	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr13	47661406	47661407	chr13:47661407:C:T	rs190922604	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr13	47726855	47726856	chr13:47726856:G:A	rs7986517	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr13	47893731	47893732	chr13:47893732:A:C	rs9534856	A	C	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr13	48179181	48179182	chr13:48179182:A:G	rs7995410	A	G	G	Sox3.mouse_HMG_3	12	1	-	1.6804383821540096	-4.512415185246757	GGTGAATTATGTTCTTA
chr13	48451436	48451437	chr13:48451437:T:C	rs776880528	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr13	48581233	48581234	chr13:48581234:G:A	rs149891440	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr13	48600881	48600882	chr13:48600882:A:G	rs9316407	A	G	A	Sox3.mouse_HMG_3	10	1	+	6.930524064691752	0.3225734231509556	GTTGAATTTCAGTCCTG
chr13	48602798	48602799	chr13:48602799:A:G	rs9595937	A	G	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr13	48661029	48661030	chr13:48661030:C:G	rs146501236	C	G	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr13	48709631	48709632	chr13:48709632:A:C	rs1323552	A	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr13	48739806	48739807	chr13:48739807:C:T	rs12584956	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr13	48946803	48946804	chr13:48946804:G:A	rs4341667	G	A	G	Sox3.mouse_HMG_3	3	1	+	14.92726542618789	9.14570053865866	AATGAATTATATTCATC
chr13	48946833	48946834	chr13:48946834:G:A	rs4341668	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr13	49679842	49679843	chr13:49679843:C:T	rs137935148	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr13	50306347	50306348	chr13:50306348:G:A	rs71436222	G	A	G	Sox3.mouse_HMG_3	3	1	+	6.109652222170955	0.328087334641725	GTTGAATTCTATTGAAA
chr13	50375811	50375812	chr13:50375812:G:T	rs12864797	G	T	G	Sox3.mouse_HMG_3	8	1	-	5.444411420938647	5.264077442438766	GAGGACTGCTATTCATA
chr13	50486672	50486673	chr13:50486673:G:C	rs149872	G	C	C	Sox3.mouse_HMG_3	11	1	+	5.207152952895683	0.5569782270895449	GAGGAATGTCAGTCAGC
chr13	50617997	50617998	chr13:50617998:T:C	rs7327141	T	C	T	Sox3.mouse_HMG_3	15	1	+	12.585111018748481	7.870717607033414	TATGAATGGCATTCCTA
chr13	50700108	50700109	chr13:50700109:G:A	rs74519657	G	A	G	Sox3.mouse_HMG_3	0	1	+	3.3944019275903186	2.5691180264439746	GATGAATGTGATTCTAT
chr13	50706553	50706554	chr13:50706554:G:A	rs797503	G	A	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr13	50745817	50745818	chr13:50745818:T:C	rs139168771	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr13	50830208	50830209	chr13:50830209:T:C	rs17528331	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr13	51047646	51047647	chr13:51047647:C:T	rs9596430	C	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr13	51066438	51066439	chr13:51066439:G:A	rs541343009	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr13	51066445	51066446	chr13:51066446:C:T	rs75875377	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr13	51246916	51246917	chr13:51246917:T:C	rs544614098	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr13	51479116	51479117	chr13:51479117:G:A	rs7984158	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr13	51783845	51783846	chr13:51783846:C:T	chr13:51783846:C:T	C	T	C	Sox3.mouse_HMG_3	1	1	+	4.412340892472954	5.619123598139756	GCTGAATTGCATTCCAT
chr13	51995314	51995315	chr13:51995315:T:C	rs113115720	T	C	T	Sox3.mouse_HMG_3	14	1	-	6.107957149913413	-0.2739890165134977	AATGAGTTCCAGTCAGG
chr13	52118579	52118580	chr13:52118580:G:A	rs9535870	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr13	52204078	52204079	chr13:52204079:T:C	rs17089486	T	C	-	Sox3.mouse_HMG_3	10	1	-	2.12277767669333	-4.485172964847468	TGTGAGTTTTAGTCAGT
chr13	52650926	52650927	chr13:52650927:G:A	rs9536218	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr13	52738010	52738011	chr13:52738011:C:T	rs60555177	C	T	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr13	52752301	52752302	chr13:52752302:G:A	rs12146944	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr13	52995721	52995722	chr13:52995722:A:G	rs9316602	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr13	53472472	53472473	chr13:53472473:A:G	rs1988388	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr13	53499089	53499090	chr13:53499090:C:T	rs9536438	C	T	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr13	53777648	53777649	chr13:53777649:G:A	rs4883778	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr13	54033280	54033281	chr13:54033281:T:C	rs9536604	T	C	C	Sox3.mouse_HMG_3	12	1	+	3.674351258688032	-2.5185023087127343	GAAGAATGGCAGTCCTC
chr13	54350374	54350375	chr13:54350375:A:C	rs2785945	A	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr13	54750777	54750778	chr13:54750778:A:G	rs117886594	A	G	A	Sox3.mouse_HMG_3	8	1	-	4.114302542413104	4.37642228732921	CTTGAATGTTGTTCAGA
chr13	54913957	54913958	chr13:54913958:T:A	rs73204607	T	A	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr13	55777832	55777833	chr13:55777833:G:A	rs78134626	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr13	56217502	56217503	chr13:56217503:T:A	rs1512648	T	A	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr13	56736908	56736909	chr13:56736909:G:T	rs151319990	G	T	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr13	57046681	57046682	chr13:57046682:G:C	rs140413726	G	C	G	Sox3.mouse_HMG_3	4	1	+	7.136529402375153	6.768804622249835	GGTGGATTATATTCATT
chr13	57450524	57450525	chr13:57450525:G:A	rs2167070	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr13	57610972	57610973	chr13:57610973:T:G	rs17573143	T	G	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr13	57740902	57740903	chr13:57740903:A:G	rs1004706913	A	G	A	Sox3.mouse_HMG_3	10	1	+	4.510589956103424	-2.0973606854373723	GATGCATGCCATGCATT
chr13	57884444	57884445	chr13:57884445:C:T	rs74816836	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr13	58297686	58297687	chr13:58297687:A:G	rs10492603	A	G	A	Sox3.mouse_HMG_3	15	1	-	8.21943605884096	3.505042647125892	TATGAATTTCAGTTATT
chr13	58738787	58738788	chr13:58738788:T:C	rs9527868	T	C	t	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr13	58883758	58883759	chr13:58883759:G:A	rs28671118	G	A	A	Sox3.mouse_HMG_3	15	1	+	2.2396819061688973	3.0984632530253178	GCTGAAGTTTAGTCAGG
chr13	59068724	59068725	chr13:59068725:G:C	rs4640069	G	C	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr13	59243776	59243777	chr13:59243777:C:G	rs1327930	C	G	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr13	59330933	59330934	chr13:59330934:C:G	rs9597978	C	G	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr13	59368614	59368615	chr13:59368615:A:C	chr13:59368615:A:C	A	C	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr13	59375034	59375035	chr13:59375035:A:G	rs9538397	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr13	59443114	59443115	chr13:59443115:A:G	rs80318765	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr13	60105156	60105157	chr13:60105157:A:G	rs61958589	A	G	A	Sox3.mouse_HMG_3	16	1	+	3.49933815565438	3.5352786121069055	AAGGATTTTCATTCATA
chr13	60572689	60572690	chr13:60572690:C:A	chr13:60572690:C:A	C	A	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr13	60583684	60583685	chr13:60583685:C:T	rs189356706	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr13	60766615	60766616	chr13:60766616:T:C	rs1399141	T	C	C	Sox3.mouse_HMG_3	1	1	-	7.2792670924925655	4.179137156055274	CATCAATTATATTCATC
chr13	60919860	60919861	chr13:60919861:C:T	rs9528262	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr13	60931996	60931997	chr13:60931997:A:G	rs2047903	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr13	61024241	61024242	chr13:61024242:G:A	rs4243019	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr13	61275391	61275392	chr13:61275392:G:C	rs79930573	G	C	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr13	61526569	61526570	chr13:61526570:G:A	rs73488661	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr13	61738906	61738907	chr13:61738907:G:A	rs4884399	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr13	62100910	62100911	chr13:62100911:A:G	rs308686	A	G	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr13	62149722	62149723	chr13:62149723:C:T	rs7317553	C	T	c	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr13	63041863	63041864	chr13:63041864:G:T	rs4884447	G	T	G	Sox3.mouse_HMG_3	13	1	-	3.5638162668554383	-2.8188204071219385	GATTAGTTGTAGTCATA
chr13	63094093	63094094	chr13:63094094:T:C	rs17087961	T	C	T	Sox3.mouse_HMG_3	5	1	-	1.3151292218117918	-5.173705700259072	CATGTATGACAGGCATT
chr13	63234661	63234662	chr13:63234662:G:A	rs112003020	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr13	63294923	63294924	chr13:63294924:A:C	rs2134898	A	C	C	Sox3.mouse_HMG_3	6	1	-	7.612691110005657	0.8616396248241869	GTTAAATTACAGTCATG
chr13	63449842	63449843	chr13:63449843:G:A	rs9317322	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr13	64513515	64513516	chr13:64513516:G:T	rs2095605	G	T	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr13	64842753	64842754	chr13:64842754:C:A	rs9528830	C	A	c	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr13	65011580	65011581	chr13:65011581:G:A	rs115569079	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr13	65858262	65858263	chr13:65858263:T:C	rs73502541	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr13	66074462	66074463	chr13:66074463:T:C	rs74841201	T	C	C	Sox3.mouse_HMG_3	9	1	+	3.411093251585254	3.403456574593508	GGAGAATGATATTCTTA
chr13	66092407	66092408	chr13:66092408:T:G	rs78703108	T	G	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr13	66099200	66099201	chr13:66099201:C:T	rs76190192	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr13	66190230	66190231	chr13:66190231:G:C	rs9599087	G	C	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr13	66464259	66464260	chr13:66464260:C:T	rs1470370	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr13	66536893	66536894	chr13:66536894:G:C	chr13:66536894:G:C	G	C	G	Sox3.mouse_HMG_3	3	1	+	4.200031605087961	-2.5494591306170857	GCAGAATTGCATTCAAC
chr13	66821535	66821536	chr13:66821536:T:C	rs9599152	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr13	66861087	66861088	chr13:66861088:G:C	chr13:66861088:G:C	G	C	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr13	66934031	66934032	chr13:66934032:A:G	rs73503490	A	G	A	Sox3.mouse_HMG_3	5	1	-	3.455088999659474	3.455088999659474	CATGATTTGTATTTATA
chr13	66981986	66981987	chr13:66981987:C:T	rs73211134	C	T	C	Sox3.mouse_HMG_3	15	1	+	2.606584928505938	7.320978340221007	GTTGAATTGTAATCACC
chr13	67283970	67283971	chr13:67283971:T:C	rs2991416	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr13	67439415	67439416	chr13:67439416:A:G	rs559518315	A	G	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr13	67771468	67771469	chr13:67771469:G:C	rs8001972	G	C	G	Sox3.mouse_HMG_3	9	1	+	2.281501165793872	7.621430173168436	GATGAATTTGAGTTATC
chr13	68274329	68274330	chr13:68274330:A:G	rs9599296	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr13	68929235	68929236	chr13:68929236:C:T	rs1541200	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr13	68929238	68929239	chr13:68929239:G:C	rs116014683	G	C	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr13	68967664	68967665	chr13:68967665:C:A	rs1541198	C	A	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr13	69007823	69007824	chr13:69007824:G:C	rs9529490	G	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr13	69095124	69095125	chr13:69095125:A:G	rs2152701	A	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr13	69770325	69770326	chr13:69770326:T:C	rs66985863	T	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr13	69770365	69770366	chr13:69770366:C:G	rs1308362052	C	G	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr13	70043945	70043946	chr13:70043946:C:T	rs371143547	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr13	70392931	70392932	chr13:70392932:A:G	rs1856999	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr13	70437078	70437079	chr13:70437079:A:C	rs76494976	A	C	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr13	70536843	70536844	chr13:70536844:T:C	rs75473080	T	C	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr13	70720696	70720697	chr13:70720697:A:G	rs12854077	A	G	A	Sox3.mouse_HMG_3	4	1	-	3.971772515338987	3.828671671698314	AATATATGATAGTCATA
chr13	70720713	70720714	chr13:70720714:A:G	rs4448810	A	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr13	70956111	70956112	chr13:70956112:G:A	rs11148865	G	A	G	Sox3.mouse_HMG_3	16	1	+	2.8751466978142846	2.839206241361759	AATTTATGACAGTCATG
chr13	71922450	71922451	chr13:71922451:A:G	rs9542777	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr13	71922486	71922487	chr13:71922487:C:A	rs191351864	C	A	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr13	71922487	71922488	chr13:71922488:T:C	rs2612818	T	C	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr13	72113262	72113263	chr13:72113263:G:A	rs112153869	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr13	72435282	72435283	chr13:72435283:C:T	rs9572978	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr13	72806121	72806122	chr13:72806122:A:T	rs111606378	A	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr13	72924808	72924809	chr13:72924809:G:A	rs2325482	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr13	73039570	73039571	chr13:73039571:C:T	rs60395541	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr13	73063264	73063265	chr13:73063265:C:T	rs533852586	C	T	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr13	73063318	73063319	chr13:73063319:G:C	rs9592879	G	C	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr13	73119690	73119691	chr13:73119691:A:C	rs2483182	A	C	C	Sox3.mouse_HMG_3	6	1	-	5.349985883401785	-1.401065601779686	CATGCATGTTATTCACA
chr13	73216211	73216212	chr13:73216212:A:G	rs191960954	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr13	73253444	73253445	chr13:73253445:G:A	rs1023101	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr13	73300068	73300069	chr13:73300069:G:A	rs73224449	G	A	G	Sox3.mouse_HMG_3	13	1	-	3.3776370204256096	-3.22962359003641	AAAGTATTTTATTCATT
chr13	73339167	73339168	chr13:73339168:C:T	rs79314915	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr13	74001604	74001605	chr13:74001605:G:A	rs9543510	G	A	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr13	74336825	74336826	chr13:74336826:A:G	rs7332421	A	G	A	Sox3.mouse_HMG_3	15	1	-	5.491939547610896	0.7775461358958276	TAAGAATTTCATCCATA
chr13	74336845	74336846	chr13:74336846:C:T	rs7332588	C	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr13	74632802	74632803	chr13:74632803:A:C	rs9543727	A	C	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr13	74639534	74639535	chr13:74639535:T:C	rs9543736	T	C	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr13	74640677	74640678	chr13:74640678:T:C	rs4885215	T	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr13	74678524	74678525	chr13:74678525:G:A	rs8000550	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr13	74678561	74678562	chr13:74678562:A:C	rs75483607	A	C	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr13	75469181	75469182	chr13:75469182:A:G	rs7335576	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr13	75621266	75621267	chr13:75621267:T:G	rs9565177	T	G	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr13	76211362	76211363	chr13:76211363:G:A	rs7317452	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr13	76330873	76330874	chr13:76330874:A:T	rs17066099	A	T	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr13	76446518	76446519	chr13:76446519:A:C	rs9544276	A	C	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr13	76477993	76477994	chr13:76477994:A:G	rs763908298	A	G	A	Sox3.mouse_HMG_3	15	1	+	2.793601942773039	1.9348205959166183	TCTGAAGTTTAGTCAAA
chr13	76496985	76496986	chr13:76496986:A:G	rs1758916	A	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr13	76497032	76497033	chr13:76497033:A:G	rs1758917	A	G	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr13	76523957	76523958	chr13:76523958:T:G	rs17066335	T	G	T	Sox3.mouse_HMG_3	10	1	-	2.7828584400051373	-3.968193045176334	CAGGAATAGTAGTCATA
chr13	76622680	76622681	chr13:76622681:T:C	rs7318168	T	C	T	Sox3.mouse_HMG_3	1	1	+	2.876798887584685	1.6700161819178858	GTTGAACGCTATTCCTG
chr13	76677043	76677044	chr13:76677044:C:G	rs777027315	C	G	C	Sox3.mouse_HMG_3	0	1	-	3.066967967065566	1.3431764679289473	GGTGAATTTTATGCAGC
chr13	77009553	77009554	chr13:77009554:G:A	rs8000325	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr13	77043090	77043091	chr13:77043091:G:A	rs77722183	G	A	-	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr13	77047044	77047045	chr13:77047045:A:G	rs60723031	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr13	77330025	77330026	chr13:77330026:G:A	rs115736965	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr13	77354351	77354352	chr13:77354352:C:T	rs78954028	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr13	77994310	77994311	chr13:77994311:A:T	rs9530709	A	T	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr13	78004776	78004777	chr13:78004777:A:C	chr13:78004777:A:C	A	C	g	Sox3.mouse_HMG_3	5	1	+	1.1643229340584311	-5.443117730420281	CATGTAATTCAGTCATA
chr13	78446822	78446823	chr13:78446823:G:A	rs7982030	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr13	78535209	78535210	chr13:78535210:G:A	rs9601075	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr13	79287486	79287487	chr13:79287487:G:A	rs1856997	G	A	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr13	79312518	79312519	chr13:79312519:C:T	rs1408656	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr13	79312541	79312542	chr13:79312542:G:A	rs7317343	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr13	79412324	79412325	chr13:79412325:T:C	rs7350686	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr13	79485440	79485441	chr13:79485441:G:T	rs185222732	G	T	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr13	79485487	79485488	chr13:79485488:A:T	rs58260634	A	T	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr13	79784138	79784139	chr13:79784139:C:T	rs4885659	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr13	80030472	80030473	chr13:80030473:A:C	rs80097521	A	C	A	Sox3.mouse_HMG_3	0	1	+	2.2074312131978022	1.3089236152075274	AATGAATTGTTTTCTAG
chr13	80118675	80118676	chr13:80118676:G:A	rs8001641	G	A	G	Sox3.mouse_HMG_3	8	1	+	2.9871556916981143	2.3640390445203012	GATGGATGGTTTTCAGA
chr13	80204817	80204818	chr13:80204818:A:G	rs9574597	A	G	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr13	80290908	80290909	chr13:80290909:G:A	rs76166597	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr13	80653330	80653331	chr13:80653331:T:G	rs17073080	T	G	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr13	80755681	80755682	chr13:80755682:C:T	rs2794249	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr13	80783606	80783607	chr13:80783607:A:G	rs1853300	A	G	G	Sox3.mouse_HMG_3	1	1	-	3.5487328485994993	2.341950142932701	TTGGAATTGCAGTCAAT
chr13	81830649	81830650	chr13:81830650:G:A	rs261487	G	A	g	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr13	82155240	82155241	chr13:82155241:T:A	rs914416	T	A	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr13	82878710	82878711	chr13:82878711:C:T	rs79892247	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr13	83513302	83513303	chr13:83513303:A:G	rs4393445	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr13	83730725	83730726	chr13:83730726:A:G	rs17077186	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr13	83838389	83838390	chr13:83838390:G:A	rs4885890	G	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr13	83845421	83845422	chr13:83845422:T:C	rs79043647	T	C	T	Sox3.mouse_HMG_3	11	1	+	3.1159847657639026	-2.9686260603380425	ATGGAATGCTATTCAGC
chr13	84513334	84513335	chr13:84513335:T:C	rs9546733	T	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr13	84582499	84582500	chr13:84582500:C:T	rs17324041	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr13	84648399	84648400	chr13:84648400:A:G	rs4884236	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr13	84776587	84776588	chr13:84776588:A:C	rs17379243	A	C	a	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr13	84896780	84896781	chr13:84896781:T:C	rs2368311	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr13	84917415	84917416	chr13:84917416:C:T	chr13:84917416:C:T	C	T	C	Sox3.mouse_HMG_3	13	1	+	7.336204240650554	0.7289436301885334	TATGCATTATATTCAAT
chr13	85000126	85000127	chr13:85000127:T:A	rs55944096	T	A	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr13	85265681	85265682	chr13:85265682:C:T	rs7317967	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr13	85277898	85277899	chr13:85277899:A:T	rs2497400	A	T	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr13	85332549	85332550	chr13:85332550:A:G	rs9319141	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr13	85401139	85401140	chr13:85401140:T:C	rs9602744	T	C	t	Sox3.mouse_HMG_3	4	1	-	2.247168833065147	-4.135647894928919	TTGGAATTCCAGTCAGT
chr13	85653854	85653855	chr13:85653855:C:G	rs9531812	C	G	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr13	85936336	85936337	chr13:85936337:A:G	rs61971090	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr13	85963548	85963549	chr13:85963549:T:C	rs9602896	T	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr13	85963575	85963576	chr13:85963576:A:G	rs9602897	A	G	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr13	85971044	85971045	chr13:85971045:T:C	rs35527585	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr13	86122084	86122085	chr13:86122085:T:C	rs7321459	T	C	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr13	86342351	86342352	chr13:86342352:T:C	rs9516460	T	C	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr13	86342357	86342358	chr13:86342358:G:A	rs9524590	G	A	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr13	86826227	86826228	chr13:86826228:C:G	rs9515993	C	G	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr13	86895077	86895078	chr13:86895078:G:C	rs7329884	G	C	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr13	86895078	86895079	chr13:86895079:C:T	rs7324982	C	T	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr13	87127857	87127858	chr13:87127858:A:T	rs9524701	A	T	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr13	87302550	87302551	chr13:87302551:G:C	rs73563720	G	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr13	87331252	87331253	chr13:87331253:C:A	rs6491324	C	A	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr13	87443467	87443468	chr13:87443468:C:A	rs1578378	C	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr13	87779539	87779540	chr13:87779540:C:T	rs16959060	C	T	C	Sox3.mouse_HMG_3	1	1	-	0.5241890159494382	3.624318952386731	AGTGGATGACAGTCCTG
chr13	88086142	88086143	chr13:88086143:G:A	rs72644716	G	A	g	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr13	88228949	88228950	chr13:88228950:C:T	rs9514453	C	T	c	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr13	88764458	88764459	chr13:88764459:C:T	rs4144008	C	T	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr13	89969818	89969819	chr13:89969819:C:A	rs9583756	C	A	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr13	89988479	89988480	chr13:89988480:T:C	rs34234059	T	C	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr13	90401111	90401112	chr13:90401112:C:T	rs1212540089	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr13	90751006	90751007	chr13:90751007:A:T	rs58630888	A	T	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr13	90799085	90799086	chr13:90799086:G:T	rs9523083	G	T	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr13	90847497	90847498	chr13:90847498:T:C	rs17842723	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr13	90867665	90867666	chr13:90867666:A:G	rs7333643	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr13	91154526	91154527	chr13:91154527:G:T	rs287504	G	T	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr13	91631077	91631078	chr13:91631078:A:G	rs10492614	A	G	A	Sox3.mouse_HMG_3	2	1	-	7.663073011494371	1.0571938932634413	AATGAATTTCAGTGATT
chr13	92114463	92114464	chr13:92114464:G:A	rs7986858	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr13	92280751	92280752	chr13:92280752:A:G	rs9516033	A	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr13	92701838	92701839	chr13:92701839:G:T	rs9523782	G	T	T	Sox3.mouse_HMG_3	9	1	-	4.128671750031868	-1.9255468744764492	AATGAATTCCATTTTTA
chr13	92838882	92838883	chr13:92838883:A:C	rs148696514	A	C	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr13	93224530	93224531	chr13:93224531:T:C	rs9584093	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr13	93620163	93620164	chr13:93620164:G:T	rs4119694	G	T	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr13	94146061	94146062	chr13:94146062:G:A	rs495705	G	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr13	94304345	94304346	chr13:94304346:G:A	rs72647622	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr13	94304383	94304384	chr13:94304384:C:T	rs9556362	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr13	94394281	94394282	chr13:94394282:C:T	rs35543770	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr13	94601359	94601360	chr13:94601360:G:A	rs116133290	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr13	94641938	94641939	chr13:94641939:G:T	rs8002846	G	T	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr13	94657451	94657452	chr13:94657452:G:A	rs1924077	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr13	94657489	94657490	chr13:94657490:C:T	rs1924078	C	T	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr13	94687542	94687543	chr13:94687543:T:A	rs9561664	T	A	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr13	95184194	95184195	chr13:95184195:C:T	rs34295536	C	T	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr13	95387925	95387926	chr13:95387926:T:A	rs10508012	T	A	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr13	95388421	95388422	chr13:95388422:T:A	rs1104553	T	A	T	Sox3.mouse_HMG_3	12	1	+	2.389127657726206	-3.723683202001024	CATTAAGTATATTCATA
chr13	95434225	95434226	chr13:95434226:C:T	rs7333503	C	T	T	Sox3.mouse_HMG_3	0	1	-	5.216575511672472	4.391291610526128	GATAAATGTCATTCTTT
chr13	95499097	95499098	chr13:95499098:G:A	rs9524984	G	A	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr13	95846290	95846291	chr13:95846291:A:G	rs9670089	A	G	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr13	96003013	96003014	chr13:96003014:T:C	rs565851	T	C	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr13	96003019	96003020	chr13:96003020:C:T	rs570288804	C	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr13	96447720	96447721	chr13:96447721:T:C	rs2011392	T	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr13	96863200	96863201	chr13:96863201:A:G	rs17699419	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr13	97126050	97126051	chr13:97126051:A:G	rs558703624	A	G	A	Sox3.mouse_HMG_3	10	1	+	4.156284579956148	-2.451666061584648	GATGAATCATATCCATC
chr13	97278635	97278636	chr13:97278636:A:G	rs6491347	A	G	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr13	97686695	97686696	chr13:97686696:G:A	rs55879778	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr13	97798209	97798210	chr13:97798210:A:G	rs7325265	A	G	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr13	97799778	97799779	chr13:97799779:A:G	rs9517075	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr13	98215190	98215191	chr13:98215191:A:G	rs11617458	A	G	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr13	98224963	98224964	chr13:98224964:A:G	rs3923333	A	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr13	98289431	98289432	chr13:98289432:A:G	rs112497422	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr13	98338486	98338487	chr13:98338487:A:G	rs686827	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr13	98362133	98362134	chr13:98362134:T:C	rs648655	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr13	98393274	98393275	chr13:98393275:T:G	rs189911251	T	G	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr13	98483948	98483949	chr13:98483949:C:G	rs149199341	C	G	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr13	98918907	98918908	chr13:98918908:C:T	rs536213256	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr13	98919716	98919717	chr13:98919717:G:A	rs4444196	G	A	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr13	99133336	99133337	chr13:99133337:A:G	rs9517619	A	G	a	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr13	99141093	99141094	chr13:99141094:C:A	rs553111344	C	A	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr13	99141094	99141095	chr13:99141095:G:A	rs113705207	G	A	G	Sox3.mouse_HMG_3	0	1	+	10.293642257232548	9.468358356086206	GGTGAATTCTAGTCAGA
chr13	99223956	99223957	chr13:99223957:C:T	rs55772696	C	T	t	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr13	99652902	99652903	chr13:99652903:T:C	rs9517814	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr13	100084230	100084231	chr13:100084231:T:C	rs7322740	T	C	c	Sox3.mouse_HMG_3	2	1	+	3.9925175523041654	-2.6133615659267653	AATGAAATCTATTCTTA
chr13	100211594	100211595	chr13:100211595:G:A	rs542995408	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr13	100331421	100331422	chr13:100331422:A:G	rs9518053	A	G	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr13	100636737	100636738	chr13:100636738:C:T	rs3803256	C	T	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr13	100805291	100805292	chr13:100805292:A:G	rs4771375	A	G	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr13	100981969	100981970	chr13:100981970:G:C	rs76941131	G	C	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr13	101010297	101010298	chr13:101010298:T:A	rs17676958	T	A	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr13	101145488	101145489	chr13:101145489:A:G	rs7992226	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr13	101203750	101203751	chr13:101203751:T:A	rs1289783	T	A	A	Sox3.mouse_HMG_3	2	1	+	3.4880814927604495	-2.2392472215791717	TGTTAATGACAGTCAAT
chr13	101205658	101205659	chr13:101205659:C:T	rs12877169	C	T	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr13	101211192	101211193	chr13:101211193:A:G	rs2181789	A	G	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr13	101698756	101698757	chr13:101698757:T:C	rs1020027	T	C	T	Sox3.mouse_HMG_3	7	1	+	2.3796063920788337	-3.023804787898484	AGTGAAATATATTCACA
chr13	101846047	101846048	chr13:101846048:G:A	rs61965163	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr13	101949782	101949783	chr13:101949783:T:G	rs727424	T	G	T	Sox3.mouse_HMG_3	8	1	-	2.7537375181736916	2.934071496673573	AATGAATGAGATTGAGG
chr13	102238078	102238079	chr13:102238079:T:C	rs58604229	T	C	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr13	102272641	102272642	chr13:102272642:G:C	rs7320637	G	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr13	102504192	102504193	chr13:102504193:T:C	rs9518755	T	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr13	102901916	102901917	chr13:102901917:C:T	rs9586006	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr13	103130823	103130824	chr13:103130824:C:T	rs115770148	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr13	103130831	103130832	chr13:103130832:T:C	rs2699335	T	C	C	Sox3.mouse_HMG_3	2	1	+	1.5873996506122634	-5.018479467618668	AATGATTAGCAGTCAAG
chr13	103256259	103256260	chr13:103256260:T:C	rs1529281	T	C	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr13	103284604	103284605	chr13:103284605:C:T	rs991381010	C	T	C	Sox3.mouse_HMG_3	7	1	-	0.313827362605968	-6.23972135205176	AATGAAAGCCAGTCTGG
chr13	103621823	103621824	chr13:103621824:A:T	rs4771461	A	T	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr13	103885017	103885018	chr13:103885018:G:T	rs1360969	G	T	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr13	103976781	103976782	chr13:103976782:C:A	rs2791257	C	A	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr13	104008656	104008657	chr13:104008657:T:A	rs17414950	T	A	T	Sox3.mouse_HMG_3	8	1	+	1.139514836584484	1.2213006030007088	GCTGTATGTCATTTATA
chr13	104106082	104106083	chr13:104106083:C:G	rs184906542	C	G	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr13	104279620	104279621	chr13:104279621:C:T	rs16964484	C	T	T	Sox3.mouse_HMG_3	14	1	+	2.646549993076662	2.646549993076662	TATGAATGACATCCCGA
chr13	104383267	104383268	chr13:104383268:C:T	rs16964708	C	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr13	104737506	104737507	chr13:104737507:A:T	rs2195696	A	T	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr13	105122005	105122006	chr13:105122006:C:T	rs6491931	C	T	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr13	105139286	105139287	chr13:105139287:T:C	rs3935937	T	C	T	Sox3.mouse_HMG_3	5	1	+	1.0010033626060053	1.0010033626060053	CATGATTGCTATTCTGG
chr13	105308042	105308043	chr13:105308043:T:C	rs12430691	T	C	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr13	105547958	105547959	chr13:105547959:A:G	rs9586886	A	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr13	105634268	105634269	chr13:105634269:A:G	rs1549055	A	G	A	Sox3.mouse_HMG_3	15	1	-	7.400852215341234	2.686458803626166	GGTAAATTTCAGTCATG
chr13	105827075	105827076	chr13:105827076:G:T	rs72663805	G	T	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr13	105848991	105848992	chr13:105848992:C:T	rs9586995	C	T	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr13	106123414	106123415	chr13:106123415:T:C	rs7328133	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr13	106276903	106276904	chr13:106276904:A:C	rs9558738	A	C	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr13	106288387	106288388	chr13:106288388:T:G	rs16968395	T	G	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr13	106472808	106472809	chr13:106472809:T:G	rs9583089	T	G	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr13	106743137	106743138	chr13:106743138:G:A	rs144943761	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr13	106743160	106743161	chr13:106743161:A:C	chr13:106743161:A:C	A	C	A	Sox3.mouse_HMG_3	9	1	-	0.8929974085525862	-4.454568275813725	AGTGGATGGTGGTCATA
chr13	107026213	107026214	chr13:107026214:G:A	chr13:107026214:G:A	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr13	107127967	107127968	chr13:107127968:G:A	rs1927745	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr13	107360214	107360215	chr13:107360215:A:C	rs9555353	A	C	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr13	107498716	107498717	chr13:107498717:G:A	rs28733781	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr13	107563232	107563233	chr13:107563233:T:C	rs7332082	T	C	T	Sox3.mouse_HMG_3	0	1	+	4.303966962177173	2.849096316840308	TGTGGATGACAGTCAGA
chr13	108176862	108176863	chr13:108176863:T:A	rs931000355	T	A	T	Sox3.mouse_HMG_3	1	1	-	1.46139467690194	-1.5086821312871521	GATGAATTTCCTTCTGG
chr13	108353001	108353002	chr13:108353002:T:A	rs9583233	T	A	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr13	108358760	108358761	chr13:108358761:C:T	rs117838441	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr13	108560755	108560756	chr13:108560756:G:A	rs12161850	G	A	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr13	108585079	108585080	chr13:108585080:A:G	rs9559373	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr13	108618329	108618330	chr13:108618330:C:T	rs7321600	C	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr13	108758584	108758585	chr13:108758585:T:C	rs4772995	T	C	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr13	108919732	108919733	chr13:108919733:T:C	rs7987738	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr13	108957094	108957095	chr13:108957095:A:G	rs9583313	A	G	A	Sox3.mouse_HMG_3	2	1	-	7.580630860050371	0.9747517418194385	CATGAATTTCATACAAA
chr13	109539237	109539238	chr13:109539238:C:T	rs61962575	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr13	109778420	109778421	chr13:109778421:G:C	rs7997595	G	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr13	110009187	110009188	chr13:110009188:A:G	rs184903676	A	G	A	Sox3.mouse_HMG_3	16	1	+	3.723271107458399	3.7592115639109247	AATGCATTTCATTCCTA
chr13	110095121	110095122	chr13:110095122:T:C	rs74124137	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr13	110095151	110095152	chr13:110095152:G:A	rs4773122	G	A	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr13	110123100	110123101	chr13:110123101:C:T	rs79575713	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr13	110134620	110134621	chr13:110134621:T:C	rs9521618	T	C	T	Sox3.mouse_HMG_3	10	1	-	8.024620567149418	1.4166699256086177	TATGAATTACATTAAGG
chr13	110160891	110160892	chr13:110160892:G:A	rs72652096	G	A	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr13	110160897	110160898	chr13:110160898:G:A	rs72652097	G	A	G	Sox3.mouse_HMG_3	3	1	+	0.9963442351753682	-4.785220652353864	GATGAAGTCTCGTCATC
chr13	110187080	110187081	chr13:110187081:A:G	rs9521638	A	G	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr13	110247696	110247697	chr13:110247697:C:T	rs61963326	C	T	C	Sox3.mouse_HMG_3	9	1	+	5.407933416272302	5.415570093264048	AGTGAATTCCATTCCAG
chr13	110247701	110247702	chr13:110247702:C:G	rs7338566	C	G	G	Sox3.mouse_HMG_3	14	1	+	5.407933416272302	5.407933416272302	AGTGAATTCCATTCCAG
chr13	110500130	110500131	chr13:110500131:A:C	rs387344	A	C	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr13	110537674	110537675	chr13:110537675:G:C	rs9521824	G	C	G	Sox3.mouse_HMG_3	16	1	+	2.536824206250997	0.4829679505736961	GATGTATGACATTCCGG
chr13	110877573	110877574	chr13:110877574:T:C	rs56101431	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr13	110983873	110983874	chr13:110983874:C:G	rs9515334	C	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr13	111127038	111127039	chr13:111127039:A:G	rs73633230	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr13	111184188	111184189	chr13:111184189:T:C	rs571655470	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr13	111240046	111240047	chr13:111240047:C:T	rs11619224	C	T	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr13	111325862	111325863	chr13:111325863:T:C	rs72653596	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.4509527120127412	-0.6491772244245506	CATTATTTTTATTCATA
chr13	111372335	111372336	chr13:111372336:C:A	rs7338945	C	A	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr13	111421964	111421965	chr13:111421965:G:A	rs1075562	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr13	111549760	111549761	chr13:111549761:A:G	rs9560127	A	G	A	Sox3.mouse_HMG_3	10	1	+	3.4242448740331826	-3.1837057675076155	TGTGAAATGTAGTCAAT
chr13	111589369	111589370	chr13:111589370:G:A	rs4773396	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr13	111630394	111630395	chr13:111630395:G:A	rs9522319	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr13	111639709	111639710	chr13:111639710:T:C	rs2000124	T	C	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr13	111892551	111892552	chr13:111892552:C:A	rs1923740	C	A	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr13	111973347	111973348	chr13:111973348:A:G	chr13:111973348:A:G	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr13	112078273	112078274	chr13:112078274:A:C	rs1054427627	A	C	A	Sox3.mouse_HMG_3	10	1	+	0.8649283627837877	-5.886123122397683	CAGGAACGTCAGTCATT
chr13	112481539	112481540	chr13:112481540:T:A	rs79218138	T	A	T	Sox3.mouse_HMG_3	6	1	+	5.85086645556343	-0.9001850296180388	ACTGAATTGCATTCTTT
chr13	112907433	112907434	chr13:112907434:C:T	rs78489437	C	T	-	Sox3.mouse_HMG_3	7	1	+	3.485066722785537	8.888477902762855	CATGGATCGTAGTCATG
chr13	112956527	112956528	chr13:112956528:C:T	rs7998446	C	T	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr13	112980195	112980196	chr13:112980196:G:C	rs7316954	G	C	C	Sox3.mouse_HMG_3	3	1	+	8.25542480218026	1.505934066475209	CAAGAATGCCATTCAGG
chr13	113486979	113486980	chr13:113486980:G:A	rs2260894	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr13	113522977	113522978	chr13:113522978:T:C	rs2770040	T	C	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr13	113537809	113537810	chr13:113537810:A:G	rs2259573	A	G	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr13	113541565	113541566	chr13:113541566:T:C	rs143361829	T	C	.	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr13	113545535	113545536	chr13:113545536:T:C	rs189669108	T	C	.	Sox3.mouse_HMG_3	0	1	-	4.659321047659871	5.484604948806216	AATGCATTCCAGTCAGT
chr13	113992635	113992636	chr13:113992636:G:C	rs3737052	G	C	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr13	114140333	114140334	chr13:114140334:C:T	rs117513936	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr13	114208760	114208761	chr13:114208761:A:G	rs6560941	A	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr13	114278761	114278762	chr13:114278762:T:G	rs78190825	T	G	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr14	16097467	16097468	chr14:16097468:A:T	rs1319621069	A	T	.	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr14	16097487	16097488	chr14:16097488:A:G	rs925128271	A	G	.	Sox3.mouse_HMG_3	0	1	+	4.951438307213158	5.7767222083595025	ATTAAATTCCATTCAAT
chr14	16097501	16097502	chr14:16097502:A:G	rs1389983240	A	G	.	Sox3.mouse_HMG_3	14	1	+	4.951438307213158	-1.430507859213753	ATTAAATTCCATTCAAT
chr14	16097982	16097983	chr14:16097983:A:C	rs1212023664	A	C	.	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr14	16098649	16098650	chr14:16098650:C:T	rs1051258091	C	T	.	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr14	16098685	16098686	chr14:16098686:A:G	rs1033182279	A	G	.	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr14	19918868	19918869	chr14:19918869:G:T	rs67930303	G	T	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr14	20294063	20294064	chr14:20294064:C:T	rs574834797	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr14	20360324	20360325	chr14:20360325:T:C	rs2781366	T	C	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr14	20415770	20415771	chr14:20415771:A:G	rs1713435	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr14	20415789	20415790	chr14:20415790:T:C	rs1713436	T	C	T	Sox3.mouse_HMG_3	6	1	+	0.09463845307723306	-6.513312188463564	CATGAATGACTGGCAAG
chr14	20584254	20584255	chr14:20584255:T:A	rs35818240	T	A	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr14	20601161	20601162	chr14:20601162:G:A	rs1272513	G	A	G	Sox3.mouse_HMG_3	8	1	+	2.4764626395845166	1.8533459924067037	AGTCAATGGCAATCATA
chr14	20610498	20610499	chr14:20610499:A:T	rs59734947	A	T	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr14	20735790	20735791	chr14:20735791:G:C	rs2319444	G	C	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr14	20735832	20735833	chr14:20735833:T:C	rs74411294	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr14	20981153	20981154	chr14:20981154:A:G	rs2783788	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr14	20981175	20981176	chr14:20981176:G:A	rs2783787	G	A	A	Sox3.mouse_HMG_3	3	1	+	3.1274709349085987	-2.6540939526206326	AGTGACTGCTATTCAGC
chr14	21015539	21015540	chr14:21015540:C:A	rs1488573559	C	A	G	Sox3.mouse_HMG_3	9	1	+	3.5871327985108086	-2.4670858259975104	TATGAAGGACAGTGATG
chr14	21103619	21103620	chr14:21103620:C:T	rs142474306	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr14	21199597	21199598	chr14:21199598:T:C	rs7156447	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr14	21202834	21202835	chr14:21202835:G:A	rs79849805	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.8586659161216705	-3.9228989714075597	GATGAAGGGTAGACAGG
chr14	21308001	21308002	chr14:21308002:C:T	rs117538734	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr14	21748767	21748768	chr14:21748768:C:T	rs1002180	C	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr14	21768228	21768229	chr14:21768229:C:T	rs760007	C	T	.	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr14	21891091	21891092	chr14:21891092:T:C	rs2280758	T	C	C	Sox3.mouse_HMG_3	14	1	-	1.758993208286417	-4.622952958140494	TATGTATTCTATCCAGA
chr14	21891097	21891098	chr14:21891098:G:C	rs2280759	G	C	G	Sox3.mouse_HMG_3	8	1	-	1.758993208286417	2.2017758769643487	TATGTATTCTATCCAGA
chr14	21923362	21923363	chr14:21923363:A:G	rs723880	A	G	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr14	22268636	22268637	chr14:22268637:C:A	rs12881142	C	A	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr14	22289730	22289731	chr14:22289731:T:C	rs3811264	T	C	T	Sox3.mouse_HMG_3	12	1	-	2.7756639340488762	2.5073999474541964	GTTGAATTCCAAACATA
chr14	22296782	22296783	chr14:22296783:A:G	rs10146820	A	G	A	Sox3.mouse_HMG_3	4	1	+	3.2260200563350363	-3.1567966716590306	GATGATTGCTAGTCTTT
chr14	22393231	22393232	chr14:22393232:C:T	rs12891257	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr14	22475757	22475758	chr14:22475758:A:G	rs75595244	A	G	A	Sox3.mouse_HMG_3	1	1	+	1.8245119703480466	-1.2756179660892442	CATGTATTTTATTCTTT
chr14	22569710	22569711	chr14:22569711:G:A	rs5742838	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr14	22593868	22593869	chr14:22593869:T:C	rs61498819	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr14	22599151	22599152	chr14:22599152:A:G	rs140779180	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr14	22646677	22646678	chr14:22646678:T:C	rs57312906	T	C	t	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr14	22668964	22668965	chr14:22668965:T:G	rs72679853	T	G	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr14	22773770	22773771	chr14:22773771:A:G	rs11568422	A	G	.	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr14	22776091	22776092	chr14:22776092:T:C	rs3850290	T	C	.	Sox3.mouse_HMG_3	7	1	+	1.5310073924142376	-3.87240378756308	AATGAACTCCTTTCAAG
chr14	22976326	22976327	chr14:22976327:G:T	rs10134257	G	T	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr14	23123571	23123572	chr14:23123572:G:T	rs75026214	G	T	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr14	23123610	23123611	chr14:23123611:G:A	rs74875723	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr14	23125186	23125187	chr14:23125187:C:T	rs8010847	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr14	23181340	23181341	chr14:23181341:A:G	rs1983698	A	G	A	Sox3.mouse_HMG_3	6	1	-	5.486192528024687	-1.121758113516109	GAAAAATTGTAGTCATG
chr14	23361236	23361237	chr14:23361237:T:C	rs111743781	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr14	23361276	23361277	chr14:23361277:G:A	rs1983652	G	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr14	23406541	23406542	chr14:23406542:C:A	rs74881223	C	A	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr14	23640585	23640586	chr14:23640586:G:A	rs17095396	G	A	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr14	23656676	23656677	chr14:23656677:C:T	rs222626	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr14	23695185	23695186	chr14:23695186:G:C	rs117092223	G	C	g	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr14	23926520	23926521	chr14:23926521:G:A	rs8019962	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr14	23926566	23926567	chr14:23926567:G:A	rs8020121	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr14	23985533	23985534	chr14:23985534:C:T	rs117915450	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr14	23987518	23987519	chr14:23987519:C:T	rs8006402	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr14	24035043	24035044	chr14:24035044:A:C	rs62000814	A	C	-	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr14	24188019	24188020	chr14:24188020:C:T	rs2295977	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr14	24245289	24245290	chr14:24245290:T:G	rs144643902	T	G	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr14	24365656	24365657	chr14:24365657:A:G	rs140733082	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.2975159677269796	-5.310434673813818	GGTGGATGTTATTTATT
chr14	24389460	24389461	chr14:24389461:A:G	rs116126265	A	G	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr14	24694682	24694683	chr14:24694683:A:G	rs68146491	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr14	24706775	24706776	chr14:24706776:C:T	rs74875195	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr14	24833626	24833627	chr14:24833627:T:C	rs79868489	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr14	25087294	25087295	chr14:25087295:C:T	rs17185649	C	T	c	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr14	25091465	25091466	chr14:25091466:A:G	rs112934577	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr14	25150667	25150668	chr14:25150668:T:C	rs2026060	T	C	t	Sox3.mouse_HMG_3	1	1	-	2.8815928427665796	-0.21853709367071383	AATGGATTTCAGCCATG
chr14	25269094	25269095	chr14:25269095:T:C	rs12588638	T	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr14	25469645	25469646	chr14:25469646:G:A	rs8015189	G	A	G	Sox3.mouse_HMG_3	4	1	+	5.738403062472979	12.121219790467048	TGTGGATGACATTCAGA
chr14	25472947	25472948	chr14:25472948:C:T	rs17457048	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr14	25501454	25501455	chr14:25501455:A:G	rs1955894	A	G	G	Sox3.mouse_HMG_3	14	1	+	8.014097143705651	1.6321509772787388	TATAAATTACAGTCAAA
chr14	25628826	25628827	chr14:25628827:G:A	rs11159415	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr14	25652115	25652116	chr14:25652116:T:G	rs1956793	T	G	G	Sox3.mouse_HMG_3	16	1	-	2.311285123472813	0.29336932424803774	TTTGAAATGCAATCATA
chr14	25652120	25652121	chr14:25652121:T:C	rs1956794	T	C	T	Sox3.mouse_HMG_3	11	1	-	2.311285123472813	6.961459849278951	TTTGAAATGCAATCATA
chr14	26019442	26019443	chr14:26019443:T:C	rs862945	T	C	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr14	26103172	26103173	chr14:26103173:C:G	rs17110708	C	G	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr14	26594860	26594861	chr14:26594861:A:C	rs1950409	A	C	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr14	26729718	26729719	chr14:26729719:G:A	rs72673139	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr14	26810036	26810037	chr14:26810037:C:T	rs73607872	C	T	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr14	26857487	26857488	chr14:26857488:G:A	rs10483325	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr14	27259476	27259477	chr14:27259477:A:G	rs542487708	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr14	27390449	27390450	chr14:27390450:G:A	rs61975878	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr14	28057907	28057908	chr14:28057908:T:A	rs141689729	T	A	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr14	28591475	28591476	chr14:28591476:C:T	rs12885201	C	T	C	Sox3.mouse_HMG_3	2	1	-	0.9964402685608911	2.0180915160928725	AGGGAAATGCATTCATG
chr14	28780519	28780520	chr14:28780520:T:C	rs34558305	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr14	29031107	29031108	chr14:29031108:C:T	rs78333495	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr14	29492242	29492243	chr14:29492243:G:T	rs185110551	G	T	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr14	29529627	29529628	chr14:29529628:G:T	rs1191554	G	T	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr14	29531475	29531476	chr14:29531476:A:G	rs1191548	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr14	30273761	30273762	chr14:30273762:G:A	rs138356190	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr14	30480604	30480605	chr14:30480605:A:G	rs72664383	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr14	30775283	30775284	chr14:30775284:G:A	rs7160558	G	A	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr14	31021792	31021793	chr14:31021793:T:C	rs7143908	T	C	t	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr14	31263078	31263079	chr14:31263079:A:C	rs961717568	A	C	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr14	31505661	31505662	chr14:31505662:G:C	rs17586057	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr14	31562228	31562229	chr14:31562229:T:C	rs377077969	T	C	T	Sox3.mouse_HMG_3	2	1	+	4.429378056770038	-2.1765010614608924	TATTAATTCTATTCCTG
chr14	31751232	31751233	chr14:31751233:A:G	rs764335518	A	G	a	Sox3.mouse_HMG_3	14	1	+	6.997400305731476	0.615454139304566	TTTGAAATGCAGTCATG
chr14	31968596	31968597	chr14:31968597:T:A	rs7148296	T	A	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr14	31988476	31988477	chr14:31988477:G:T	rs1952969	G	T	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr14	32023713	32023714	chr14:32023714:A:G	rs115791193	A	G	a	Sox3.mouse_HMG_3	1	1	-	4.6309910950020505	3.4242083893352513	ATTGAAATACAGTCATT
chr14	32023714	32023715	chr14:32023715:T:G	rs184754449	T	G	T	Sox3.mouse_HMG_3	0	1	-	4.6309910950020505	3.732483497011777	ATTGAAATACAGTCATT
chr14	32217349	32217350	chr14:32217350:T:C	rs74912227	T	C	t	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr14	32366978	32366979	chr14:32366979:T:C	rs145206418	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr14	32477560	32477561	chr14:32477561:T:C	rs61982982	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr14	32812175	32812176	chr14:32812176:G:A	rs61981393	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr14	33039718	33039719	chr14:33039719:G:T	rs1953444	G	T	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr14	33257230	33257231	chr14:33257231:G:C	rs243297	G	C	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr14	33310746	33310747	chr14:33310747:G:C	rs1440201	G	C	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr14	33331234	33331235	chr14:33331235:T:A	rs4981184	T	A	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr14	33332985	33332986	chr14:33332986:G:A	rs2133891	G	A	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr14	33341088	33341089	chr14:33341089:G:A	rs8009681	G	A	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr14	33683852	33683853	chr14:33683853:C:T	rs883350	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr14	33700844	33700845	chr14:33700845:C:T	rs4287473	C	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr14	33720293	33720294	chr14:33720294:G:A	rs57171231	G	A	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr14	33720300	33720301	chr14:33720301:A:G	rs10134189	A	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr14	33916942	33916943	chr14:33916943:A:G	rs34206322	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr14	33926893	33926894	chr14:33926894:C:T	rs10137361	C	T	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr14	34021228	34021229	chr14:34021229:C:G	rs56006537	C	G	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr14	34105181	34105182	chr14:34105182:G:C	rs55976711	G	C	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr14	34256683	34256684	chr14:34256684:T:A	rs10143917	T	A	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr14	34304222	34304223	chr14:34304223:G:A	rs882140	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr14	34388341	34388342	chr14:34388342:G:C	rs11156843	G	C	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr14	34461624	34461625	chr14:34461625:A:C	rs564750074	A	C	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr14	34461639	34461640	chr14:34461640:C:T	rs74046057	C	T	T	Sox3.mouse_HMG_3	11	1	-	4.791662920441104	0.14148819463496654	CAAGAATTCTAGTCAGT
chr14	34619793	34619794	chr14:34619794:T:C	rs115035391	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr14	34705808	34705809	chr14:34705809:G:A	rs76563724	G	A	g	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr14	34709835	34709836	chr14:34709836:C:T	rs2891294	C	T	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr14	35150609	35150610	chr14:35150610:A:G	rs11156875	A	G	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr14	35540277	35540278	chr14:35540278:G:A	rs28708787	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr14	36822929	36822930	chr14:36822930:A:G	rs712346	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr14	37038188	37038189	chr14:37038189:G:T	rs10047907	G	T	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr14	37039199	37039200	chr14:37039200:G:T	rs9888611	G	T	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr14	37039200	37039201	chr14:37039201:C:T	rs9888610	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr14	37041672	37041673	chr14:37041673:T:C	rs12894251	T	C	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr14	37047800	37047801	chr14:37047801:G:A	rs10136755	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr14	37791786	37791787	chr14:37791787:T:C	rs4901274	T	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr14	37887847	37887848	chr14:37887848:G:A	rs143935351	G	A	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr14	37969330	37969331	chr14:37969331:C:T	rs954881	C	T	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr14	38098566	38098567	chr14:38098567:G:A	rs77705351	G	A	G	Sox3.mouse_HMG_3	6	1	-	1.5676282757448976	8.175578917285694	GATGAACGGCATTCTCG
chr14	38099642	38099643	chr14:38099643:G:A	rs12147337	G	A	A	Sox3.mouse_HMG_3	11	1	+	1.7794622405585907	-2.870712485247547	AAAGGATGGCAGTCAGG
chr14	38126749	38126750	chr14:38126750:A:T	rs12432704	A	T	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr14	38342287	38342288	chr14:38342288:A:T	rs117096494	A	T	A	Sox3.mouse_HMG_3	6	1	-	2.4006729545985053	-4.350378530582965	TAGGAATTGCAGTCCTT
chr14	38485726	38485727	chr14:38485727:C:T	rs8020485	C	T	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr14	38536867	38536868	chr14:38536868:A:G	rs2415484	A	G	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr14	38592827	38592828	chr14:38592828:C:T	rs1890393	C	T	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr14	38667182	38667183	chr14:38667183:C:G	rs17489831	C	G	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr14	38820216	38820217	chr14:38820217:C:T	rs7150673	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr14	38835969	38835970	chr14:38835970:A:G	rs573560487	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr14	38885437	38885438	chr14:38885438:T:C	rs1957047	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr14	39103830	39103831	chr14:39103831:T:C	rs114477306	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr14	39113490	39113491	chr14:39113491:G:C	rs2415533	G	C	G	Sox3.mouse_HMG_3	1	1	+	1.8532947289805715	0.7765651515619704	AGTCAATTGTATTCACT
chr14	39393427	39393428	chr14:39393428:T:G	rs17109168	T	G	T	Sox3.mouse_HMG_3	14	1	-	0.506931909450427	-5.875014256976484	TGTGAAAGGCATGCAAG
chr14	39454946	39454947	chr14:39454947:A:G	rs4899277	A	G	A	Sox3.mouse_HMG_3	1	1	+	0.8351941440773349	-2.2649357923599585	AAGGAAAGACAGTCATC
chr14	39614489	39614490	chr14:39614490:A:G	rs75540097	A	G	A	Sox3.mouse_HMG_3	15	1	-	2.9052415337195816	-1.809151877995487	GAGGAATACCAGTCATT
chr14	40034082	40034083	chr14:40034083:C:A	rs7160758	C	A	A	Sox3.mouse_HMG_3	7	1	-	4.372711726950612	3.5226787847205414	GCTAAATGACATTCAAC
chr14	40034100	40034101	chr14:40034101:C:T	rs7160773	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr14	40119554	40119555	chr14:40119555:A:G	rs35966928	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr14	40393235	40393236	chr14:40393236:C:A	rs7148563	C	A	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr14	40393256	40393257	chr14:40393257:T:C	rs7149829	T	C	C	Sox3.mouse_HMG_3	7	1	+	2.826749724267052	-2.576661455710267	CATGACTTGTACTCATT
chr14	40414437	40414438	chr14:40414438:C:A	rs61988107	C	A	C	Sox3.mouse_HMG_3	16	1	+	1.7235637947293845	3.7414795939541596	GATCAGTGGTATTCAAC
chr14	40635617	40635618	chr14:40635618:T:C	rs10083519	T	C	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr14	40841217	40841218	chr14:40841218:A:G	rs10136606	A	G	A	Sox3.mouse_HMG_3	9	1	-	2.872727270208485	2.865090593216739	AAAGGATTGTAGTCATT
chr14	41384641	41384642	chr14:41384642:T:C	rs12435856	T	C	.	Sox3.mouse_HMG_3	14	1	-	5.034956980289189	-1.3469891861377221	AGAGAATTGCAGTCAAA
chr14	41548842	41548843	chr14:41548843:G:A	rs79093799	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr14	41600757	41600758	chr14:41600758:A:G	rs76233485	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr14	41607557	41607558	chr14:41607558:C:T	rs79536362	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr14	41665417	41665418	chr14:41665418:C:T	rs1374754	C	T	C	Sox3.mouse_HMG_3	11	1	-	3.524321342743053	-1.125853383063086	GATGGAGGGTAGTCATT
chr14	41786002	41786003	chr14:41786003:A:G	rs117866579	A	G	A	Sox3.mouse_HMG_3	6	1	-	0.6083599491109991	-5.9995906924298	GAACAATGCCAGTCAGT
chr14	42373600	42373601	chr14:42373601:C:T	rs34669230	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr14	42741904	42741905	chr14:42741905:G:A	rs1954353	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr14	42863765	42863766	chr14:42863766:A:G	rs1349253	A	G	G	Sox3.mouse_HMG_3	2	1	-	2.242428040557301	-4.363451077673628	AATGAATTACACTAAAG
chr14	43004051	43004052	chr14:43004052:C:T	rs75218415	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr14	43174485	43174486	chr14:43174486:A:G	rs35703406	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr14	43533250	43533251	chr14:43533251:T:C	rs112321057	T	C	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr14	43850281	43850282	chr14:43850282:A:G	rs1951550	A	G	G	Sox3.mouse_HMG_3	5	1	+	3.622809586221701	-2.866025335849163	AATGAAATATATTTATG
chr14	44162318	44162319	chr14:44162319:C:T	rs7149136	C	T	C	Sox3.mouse_HMG_3	15	1	+	5.723412629686227	10.437806041401295	CATAAATTCCATTCACA
chr14	44195142	44195143	chr14:44195143:C:T	rs1959210	C	T	C	Sox3.mouse_HMG_3	0	1	+	6.656047277899024	8.110917923235888	CATGAAAGCCAGTCAAG
chr14	44405245	44405246	chr14:44405246:A:T	rs17627207	A	T	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr14	44640527	44640528	chr14:44640528:G:T	rs35386598	G	T	T	Sox3.mouse_HMG_3	1	1	-	1.4013054517142767	5.57816496557017	TCTGAATTGCATCCTTG
chr14	44845416	44845417	chr14:44845417:T:G	rs17115648	T	G	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr14	44847698	44847699	chr14:44847699:T:C	rs76452624	T	C	T	Sox3.mouse_HMG_3	15	1	+	5.3496613620561	0.6352679503410319	GATGAGTGAGAGTCATA
chr14	44981275	44981276	chr14:44981276:G:A	rs78592865	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr14	45519537	45519538	chr14:45519538:C:T	rs61997870	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr14	45727193	45727194	chr14:45727194:T:C	rs1906794	T	C	T	Sox3.mouse_HMG_3	9	1	+	2.439572527795012	2.4319358508032654	AATGACTTTTAGTCTTA
chr14	46024173	46024174	chr14:46024174:C:T	rs11851440	C	T	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr14	46054561	46054562	chr14:46054562:C:T	rs17656832	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr14	46381379	46381380	chr14:46381380:A:G	rs35563644	A	G	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr14	46637283	46637284	chr14:46637284:C:A	rs360193	C	A	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr14	46691622	46691623	chr14:46691623:T:G	rs11624005	T	G	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr14	47194251	47194252	chr14:47194252:C:G	rs572401114	C	G	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr14	47269587	47269588	chr14:47269588:A:G	rs7148978	A	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr14	47332224	47332225	chr14:47332225:A:G	rs78648414	A	G	A	Sox3.mouse_HMG_3	10	1	+	5.099525232711667	-1.508425408829131	GCTGAAAGACAGTCATT
chr14	47332233	47332234	chr14:47332234:T:A	rs12885665	T	A	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr14	47388941	47388942	chr14:47388942:A:C	rs8021759	A	C	A	Sox3.mouse_HMG_3	2	1	-	9.665847758666942	2.916867796795337	TTTGAATGACAGTCAGT
chr14	47730400	47730401	chr14:47730401:T:C	rs75522475	T	C	T	Sox3.mouse_HMG_3	16	1	+	3.5902888134586997	2.723362073986421	AGTGCATTTCATTCAAT
chr14	47865775	47865776	chr14:47865776:G:A	rs1950761	G	A	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr14	48173907	48173908	chr14:48173908:T:C	rs41320346	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr14	48709681	48709682	chr14:48709682:G:A	rs76708856	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr14	48725201	48725202	chr14:48725202:C:T	rs761479596	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr14	48725202	48725203	chr14:48725203:G:A	rs939657323	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr14	48771893	48771894	chr14:48771894:T:C	rs61708304	T	C	T	Sox3.mouse_HMG_3	16	1	-	4.842550494534238	4.878490950986763	AATGAATGCTTTTCCTA
chr14	48901799	48901800	chr14:48901800:A:G	rs6572524	A	G	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr14	48944190	48944191	chr14:48944191:A:G	rs75266690	A	G	A	Sox3.mouse_HMG_3	14	1	+	3.219315737780375	-3.1626304286465357	GTTGAATGTCAGCCACA
chr14	49218804	49218805	chr14:49218805:C:T	rs9888631	C	T	C	Sox3.mouse_HMG_3	11	1	-	1.5504774389422809	-3.099697286863859	GCAGGATGGCAGTCATG
chr14	49546605	49546606	chr14:49546606:G:C	rs17121550	G	C	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr14	49898441	49898442	chr14:49898442:T:C	rs3100872	T	C	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr14	49921184	49921185	chr14:49921185:G:A	rs12589830	G	A	G	Sox3.mouse_HMG_3	7	1	+	1.8229771364667464	-4.730571578190983	GTTGAGTGCCAGACATG
chr14	49921195	49921196	chr14:49921196:T:C	rs12587527	T	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr14	49947342	49947343	chr14:49947343:G:C	rs34406785	G	C	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr14	49975667	49975668	chr14:49975668:G:A	rs10129719	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr14	50038492	50038493	chr14:50038493:T:C	rs2281530	T	C	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr14	50038536	50038537	chr14:50038537:C:T	rs77800967	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr14	50044668	50044669	chr14:50044669:T:C	rs17252164	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr14	50044673	50044674	chr14:50044674:G:C	rs11628071	G	C	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr14	50063505	50063506	chr14:50063506:C:T	rs76272385	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr14	50200508	50200509	chr14:50200509:C:T	rs12896404	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr14	50213418	50213419	chr14:50213419:C:T	rs10142902	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr14	50882727	50882728	chr14:50882728:G:A	rs8006072	G	A	g	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr14	50964692	50964693	chr14:50964693:C:T	rs10145802	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr14	50998918	50998919	chr14:50998919:T:A	rs12891180	T	A	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr14	51011289	51011290	chr14:51011290:C:A	rs10137411	C	A	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr14	51020635	51020636	chr14:51020636:C:T	rs946623	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr14	51029385	51029386	chr14:51029386:T:G	rs8013051	T	G	T	Sox3.mouse_HMG_3	11	1	+	5.0305896699534784	3.5961535696576714	AGTGCATGCCATTCAGG
chr14	51058455	51058456	chr14:51058456:C:A	rs12588907	C	A	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr14	51253438	51253439	chr14:51253439:T:G	rs144931983	T	G	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr14	51397777	51397778	chr14:51397778:G:C	rs10151599	G	C	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr14	51401307	51401308	chr14:51401308:A:G	rs139293988	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr14	51444456	51444457	chr14:51444457:T:G	rs7148299	T	G	G	Sox3.mouse_HMG_3	1	1	-	1.7232417964072446	-2.4536177174486484	AATGAATGGCAGTGTAA
chr14	51484882	51484883	chr14:51484883:A:G	rs10148397	A	G	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr14	51533418	51533419	chr14:51533419:C:G	rs1956568	C	G	C	Sox3.mouse_HMG_3	7	1	-	1.3673259655167305	-4.886118156690661	AATTTATGCCATTCAGG
chr14	51637850	51637851	chr14:51637851:T:G	rs1467522	T	G	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr14	51789443	51789444	chr14:51789444:C:A	rs35970981	C	A	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr14	51807377	51807378	chr14:51807378:G:C	rs7157830	G	C	G	Sox3.mouse_HMG_3	3	1	+	1.6527398514096652	-5.096750884295386	AGTGAATTTAAATCATG
chr14	51837811	51837812	chr14:51837812:A:G	rs78507467	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr14	51866399	51866400	chr14:51866400:G:A	rs8005555	G	A	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr14	52266933	52266934	chr14:52266934:C:T	rs33998702	C	T	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr14	52266980	52266981	chr14:52266981:C:T	rs803011	C	T	t	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr14	52455935	52455936	chr14:52455936:G:T	rs8003291	G	T	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr14	52577506	52577507	chr14:52577507:C:T	rs2357800	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr14	52628103	52628104	chr14:52628104:T:C	rs1007895	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr14	52640366	52640367	chr14:52640367:T:C	rs7647	T	C	c	Sox3.mouse_HMG_3	5	1	-	1.2899192698134274	-5.198915652257435	CAAGTATGCTAGTCATC
chr14	53193844	53193845	chr14:53193845:A:C	rs2552400	A	C	C	Sox3.mouse_HMG_3	9	1	-	12.103825909755642	6.756260225389329	AAAGAATGATATTCATG
chr14	53225918	53225919	chr14:53225919:A:G	rs72690138	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr14	53260616	53260617	chr14:53260617:C:T	rs10438124	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr14	53296455	53296456	chr14:53296456:G:A	rs4901391	G	A	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr14	53622637	53622638	chr14:53622638:G:A	rs10873073	G	A	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr14	53629114	53629115	chr14:53629115:G:A	rs210375	G	A	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr14	53715002	53715003	chr14:53715003:A:T	rs75954726	A	T	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr14	53744093	53744094	chr14:53744094:G:A	rs12894632	G	A	G	Sox3.mouse_HMG_3	16	1	+	2.191027663748955	2.1550872072964293	GTTGAGTTACAGTCACG
chr14	53851026	53851027	chr14:53851027:A:C	rs112080167	A	C	A	Sox3.mouse_HMG_3	16	1	+	1.6980607233080767	-0.3198550759166985	AGTGATTGACATTCCTA
chr14	53865409	53865410	chr14:53865410:T:C	rs28647576	T	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr14	53900881	53900882	chr14:53900882:T:G	rs12435627	T	G	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr14	53930455	53930456	chr14:53930456:G:A	rs11157992	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr14	54191810	54191811	chr14:54191811:A:G	rs10140646	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr14	54365479	54365480	chr14:54365480:C:T	rs17727002	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr14	54384505	54384506	chr14:54384506:A:G	rs8019495	A	G	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr14	54384510	54384511	chr14:54384511:T:C	rs8020794	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr14	54450540	54450541	chr14:54450541:A:G	rs73257099	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr14	54594055	54594056	chr14:54594056:C:T	rs137941593	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr14	54594102	54594103	chr14:54594103:T:G	rs1187599	T	G	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr14	54699180	54699181	chr14:54699181:G:T	rs2273742	G	T	G	Sox3.mouse_HMG_3	8	1	-	4.267193672595693	4.0868596940958115	GATAAAATCTATTCATT
chr14	54741678	54741679	chr14:54741679:C:A	rs17127855	C	A	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr14	54764257	54764258	chr14:54764258:G:A	rs117518151	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr14	54890811	54890812	chr14:54890812:A:G	rs114920961	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr14	55029412	55029413	chr14:55029413:G:C	rs1212641	G	C	C	Sox3.mouse_HMG_3	3	1	+	6.584828133104336	-0.16466260260071364	ATTGAATTGCAGTGATG
chr14	55194144	55194145	chr14:55194145:C:A	rs66476033	C	A	C	Sox3.mouse_HMG_3	1	1	+	2.3789463242006565	6.55580583805655	TCTGAATTACAGGCAGA
chr14	55201451	55201452	chr14:55201452:G:T	rs56098354	G	T	G	Sox3.mouse_HMG_3	9	1	-	8.00852088242338	1.9543022579150595	CATGAATGGCATGCAGA
chr14	55412902	55412903	chr14:55412903:C:A	rs192182057	C	A	C	Sox3.mouse_HMG_3	9	1	+	1.3002291096076843	-4.753989514900635	GATGATTTACAGCCAAG
chr14	55483267	55483268	chr14:55483268:G:A	rs67254745	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr14	55706003	55706004	chr14:55706004:A:G	rs12323476	A	G	G	Sox3.mouse_HMG_3	9	1	-	1.6779939512682291	1.6703572742764832	GTAAAATGGTATTCAGG
chr14	55832206	55832207	chr14:55832207:A:G	rs7148208	A	G	G	Sox3.mouse_HMG_3	1	1	+	2.575270039065134	-0.5248598973721584	AATGAATCATAGGCATT
chr14	55873030	55873031	chr14:55873031:C:T	rs77846397	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr14	55952009	55952010	chr14:55952010:C:T	rs870886	C	T	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr14	55976954	55976955	chr14:55976955:T:G	rs1203011	T	G	.	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr14	56056342	56056343	chr14:56056343:G:T	rs2928875	G	T	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr14	56236421	56236422	chr14:56236422:C:T	rs12895666	C	T	C	Sox3.mouse_HMG_3	13	1	+	3.8378333090652212	-2.7694273013967985	AATGAATGAGATTCCAG
chr14	56236440	56236441	chr14:56236441:A:G	rs12895653	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr14	56388879	56388880	chr14:56388880:C:G	rs1152551	C	G	C	Sox3.mouse_HMG_3	0	1	+	0.07887556978936128	1.8026670689259787	CAGGAATTGCAGTCCTC
chr14	56453488	56453489	chr14:56453489:A:G	rs1307538	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr14	56753401	56753402	chr14:56753402:A:G	rs169147	A	G	A	Sox3.mouse_HMG_3	2	1	-	1.0518431988253503	-5.554035919405582	TTTGAAAGCTGTTCATT
chr14	56800209	56800210	chr14:56800210:G:A	rs198240	G	A	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr14	56841770	56841771	chr14:56841771:C:A	rs8017449	C	A	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr14	57716351	57716352	chr14:57716352:T:C	rs7156904	T	C	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr14	57945252	57945253	chr14:57945253:G:A	rs7145496	G	A	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr14	57977491	57977492	chr14:57977492:T:G	rs7158982	T	G	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr14	58501377	58501378	chr14:58501378:A:G	rs1329438331	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr14	58815580	58815581	chr14:58815581:A:G	rs1365796	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr14	58899682	58899683	chr14:58899683:C:A	rs12881518	C	A	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr14	59308843	59308844	chr14:59308844:G:A	rs17255610	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr14	59333978	59333979	chr14:59333979:G:A	chr14:59333979:G:A	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr14	59333979	59333980	chr14:59333980:A:T	chr14:59333980:A:T	A	T	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr14	59544102	59544103	chr14:59544103:C:T	rs12882633	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr14	59983227	59983228	chr14:59983228:T:C	rs219336	T	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr14	60098089	60098090	chr14:60098090:T:C	rs219306	T	C	T	Sox3.mouse_HMG_3	14	1	-	1.2219634867549811	-5.15998267967193	TGTGATTTATGTTCATG
chr14	60245796	60245797	chr14:60245797:G:C	rs8018093	G	C	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr14	60420255	60420256	chr14:60420256:C:A	rs1254304	C	A	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr14	60625227	60625228	chr14:60625228:C:T	rs78220468	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr14	60632542	60632543	chr14:60632543:G:A	rs7153263	G	A	g	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr14	60632547	60632548	chr14:60632548:C:T	rs113124640	C	T	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr14	60778012	60778013	chr14:60778013:G:A	chr14:60778013:G:A	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr14	61106340	61106341	chr14:61106341:G:A	rs35652546	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr14	61120116	61120117	chr14:61120117:G:A	rs139058002	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr14	61146454	61146455	chr14:61146455:T:C	rs117580362	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr14	61154461	61154462	chr14:61154462:G:T	rs7159153	G	T	A	Sox3.mouse_HMG_3	0	1	-	3.4259222481036904	4.324429846093964	CTGGAATGTCAGTCAAG
chr14	61154665	61154666	chr14:61154666:T:A	rs10140040	T	A	T	Sox3.mouse_HMG_3	12	1	+	4.181252100025378	-1.9315587597018533	CAAGAATTTCAATCATG
chr14	61329919	61329920	chr14:61329920:C:T	rs72728008	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr14	61366657	61366658	chr14:61366658:A:T	rs4899039	A	T	T	Sox3.mouse_HMG_3	0	1	+	10.778506832997191	11.334869880343781	AATGAGTGGTATTCATT
chr14	61462240	61462241	chr14:61462241:G:T	rs114722313	G	T	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr14	61472852	61472853	chr14:61472853:T:C	rs11621877	T	C	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr14	61483024	61483025	chr14:61483025:A:G	rs3783776	A	G	A	Sox3.mouse_HMG_3	10	1	+	4.259677004192411	-2.3482736373483863	TGTGACTGCCAGTCAGA
chr14	61498890	61498891	chr14:61498891:T:C	rs17098579	T	C	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr14	61539335	61539336	chr14:61539336:A:G	rs117498462	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr14	61616273	61616274	chr14:61616274:T:A	rs2253980	T	A	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr14	61790884	61790885	chr14:61790885:G:A	rs10140578	G	A	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr14	62359689	62359690	chr14:62359690:C:T	rs4306424	C	T	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr14	62614972	62614973	chr14:62614973:T:C	rs1906943	T	C	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr14	62669224	62669225	chr14:62669225:C:T	rs2355059	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr14	62675270	62675271	chr14:62675271:C:T	rs8009247	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr14	62762551	62762552	chr14:62762552:C:A	rs116023426	C	A	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr14	62945722	62945723	chr14:62945723:A:T	rs10141487	A	T	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr14	63555010	63555011	chr14:63555011:G:C	rs12232206	G	C	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr14	64063072	64063073	chr14:64063073:A:T	rs72718393	A	T	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr14	64213566	64213567	chr14:64213567:T:C	rs968257	T	C	T	Sox3.mouse_HMG_3	0	1	-	2.4876653239776925	3.3129492251240364	AATGGTTGTCATTCAAG
chr14	64293468	64293469	chr14:64293469:T:A	rs75655276	T	A	T	Sox3.mouse_HMG_3	4	1	-	1.6523954673610695	-4.955045197117643	AGTGAATGTCATTTTTG
chr14	64440864	64440865	chr14:64440865:C:T	rs80318983	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr14	64846133	64846134	chr14:64846134:T:C	rs72726237	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr14	65319990	65319991	chr14:65319991:C:T	rs1462017414	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr14	65636544	65636545	chr14:65636545:G:A	rs7148401	G	A	G	Sox3.mouse_HMG_3	15	1	-	1.1151922472593712	5.829585658974439	ACTGAATGACAGTAACG
chr14	65827424	65827425	chr14:65827425:T:C	rs8006948	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr14	65865181	65865182	chr14:65865182:G:A	rs55861984	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr14	65912159	65912160	chr14:65912160:A:G	rs74056899	A	G	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr14	65930467	65930468	chr14:65930468:C:T	rs2318310	C	T	T	Sox3.mouse_HMG_3	15	1	-	-0.18675245273060948	0.672028894125811	GGTGAACGCTATCCAGG
chr14	66242005	66242006	chr14:66242006:T:C	rs75546911	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr14	66312197	66312198	chr14:66312198:C:A	rs146848317	C	A	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr14	66681405	66681406	chr14:66681406:C:G	rs7142755	C	G	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr14	66681416	66681417	chr14:66681417:A:T	rs8005352	A	T	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr14	67575537	67575538	chr14:67575538:A:G	rs4902490	A	G	A	Sox3.mouse_HMG_3	1	1	-	1.8259580493859409	0.6191753437191427	ATAGAGTGGCAGTCATG
chr14	67673586	67673587	chr14:67673587:T:C	rs72723126	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr14	67733665	67733666	chr14:67733666:C:A	rs61991869	C	A	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr14	67750490	67750491	chr14:67750491:T:A	rs742866	T	A	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr14	67987787	67987788	chr14:67987788:G:A	rs17192586	G	A	G	Sox3.mouse_HMG_3	13	1	-	0.2707207950678384	-6.336539815394182	GGTGAATGTCAGCCGTT
chr14	68084555	68084556	chr14:68084556:A:G	rs11158719	A	G	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr14	68145052	68145053	chr14:68145053:A:G	rs35131778	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr14	68165094	68165095	chr14:68165095:G:A	rs1952246	G	A	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr14	68172249	68172250	chr14:68172250:T:A	rs1555942	T	A	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr14	68174662	68174663	chr14:68174663:C:T	rs73288068	C	T	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr14	68248449	68248450	chr14:68248450:T:C	rs1744959	T	C	C	Sox3.mouse_HMG_3	0	1	+	1.7852847646416194	0.33041411930475517	TGTGAAGGATCTTCATG
chr14	68248463	68248464	chr14:68248464:A:G	rs1314921	A	G	A	Sox3.mouse_HMG_3	14	1	+	1.7852847646416194	-4.596661401785291	TGTGAAGGATCTTCATG
chr14	68283209	68283210	chr14:68283210:G:A	rs3784099	G	A	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr14	68548366	68548367	chr14:68548367:C:T	rs940535849	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr14	68548389	68548390	chr14:68548390:G:A	rs192733921	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr14	68726743	68726744	chr14:68726744:T:C	rs11621136	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr14	68748864	68748865	chr14:68748865:C:G	rs115920257	C	G	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr14	68749234	68749235	chr14:68749235:T:C	rs4899255	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr14	68881461	68881462	chr14:68881462:T:C	rs181460	T	C	C	Sox3.mouse_HMG_3	4	1	-	10.80939867695987	4.426581948965801	GATGAATGGGATTCAGG
chr14	68896020	68896021	chr14:68896021:G:A	rs11620768	G	A	G	Sox3.mouse_HMG_3	15	1	-	0.9391745086845034	5.6535679203995715	AATGGATGGTATTCTCA
chr14	68925077	68925078	chr14:68925078:C:T	rs61981586	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr14	68958540	68958541	chr14:68958541:C:T	rs12101054	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr14	69483399	69483400	chr14:69483400:G:A	rs79072402	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr14	69657989	69657990	chr14:69657990:C:T	rs567329204	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr14	69716008	69716009	chr14:69716009:A:C	rs1017428088	A	C	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr14	69716024	69716025	chr14:69716025:G:C	rs4902749	G	C	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr14	69725795	69725796	chr14:69725796:T:C	rs986340381	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr14	69789353	69789354	chr14:69789354:A:G	rs577521488	A	G	A	Sox3.mouse_HMG_3	16	1	+	4.144886993533188	4.180827449985713	AATGTATTATATCCATA
chr14	69895207	69895208	chr14:69895208:C:T	rs79253476	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr14	69956969	69956970	chr14:69956970:T:A	rs1380430	T	A	A	Sox3.mouse_HMG_3	10	1	-	2.815490618921623	-3.9355608662598476	GATGAAGTCCATACAAA
chr14	70032634	70032635	chr14:70032635:C:G	rs73290791	C	G	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr14	70141497	70141498	chr14:70141498:C:T	rs8005050	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr14	70156811	70156812	chr14:70156812:G:A	rs74062812	G	A	G	Sox3.mouse_HMG_3	7	1	+	0.8615459749744971	-5.692002739683231	CATGAATGGCAGGGAAG
chr14	70186506	70186507	chr14:70186507:C:T	rs12050332	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr14	70190535	70190536	chr14:70190536:C:A	rs6573935	C	A	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr14	70382370	70382371	chr14:70382371:C:T	rs10146573	C	T	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr14	70382396	70382397	chr14:70382397:A:G	rs10146506	A	G	G	Sox3.mouse_HMG_3	10	1	+	4.7523453497816694	-1.8556052917591277	AATGTATGTCATTCCTG
chr14	70827530	70827531	chr14:70827531:T:C	rs61990553	T	C	t	Sox3.mouse_HMG_3	5	1	-	6.924657563996095	0.43582264192523235	ATTCAATGATATTCATT
chr14	70905049	70905050	chr14:70905050:G:A	rs192370093	G	A	G	Sox3.mouse_HMG_3	0	1	+	3.204835352336474	2.37955145119013	GATCAATCCCAGTCATT
chr14	71194044	71194045	chr14:71194045:C:T	rs757571	C	T	T	Sox3.mouse_HMG_3	15	1	+	1.2735485893706642	5.987942001085733	AGTGTATGTTATTCACC
chr14	71340005	71340006	chr14:71340006:G:A	rs150390173	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr14	71340009	71340010	chr14:71340010:G:A	rs17767434	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr14	71488793	71488794	chr14:71488794:G:A	rs75830664	G	A	G	Sox3.mouse_HMG_3	3	1	+	8.450958076769703	2.6693931892404734	TCTGGATGGTATTCATG
chr14	71492004	71492005	chr14:71492005:C:T	rs150925118	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr14	71754397	71754398	chr14:71754398:T:G	rs10132035	T	G	t	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr14	71824505	71824506	chr14:71824506:C:T	rs17178716	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr14	71891969	71891970	chr14:71891970:A:G	rs28138	A	G	A	Sox3.mouse_HMG_3	14	1	+	1.6841229738276413	-4.6978231925992695	GTAGAATGTCTGTCATG
chr14	72001930	72001931	chr14:72001931:T:C	rs2238270	T	C	c	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr14	72182920	72182921	chr14:72182921:G:T	rs11628641	G	T	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr14	72417141	72417142	chr14:72417142:C:T	rs113635383	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr14	72418799	72418800	chr14:72418800:A:G	rs184330596	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr14	72463509	72463510	chr14:72463510:C:T	rs140800467	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr14	72597349	72597350	chr14:72597350:G:A	rs2877814	G	A	g	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr14	72709396	72709397	chr14:72709397:T:C	rs6574092	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr14	72810383	72810384	chr14:72810384:C:A	rs1990441	C	A	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr14	72810390	72810391	chr14:72810391:T:C	rs8015833	T	C	T	Sox3.mouse_HMG_3	0	1	+	9.026306935805426	7.571436290468559	TGTGAATCACATTCATG
chr14	72810391	72810392	chr14:72810392:G:T	rs535743409	G	T	G	Sox3.mouse_HMG_3	1	1	+	9.026306935805426	9.156360064053622	TGTGAATCACATTCATG
chr14	73179229	73179230	chr14:73179230:A:G	rs2333030	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr14	73236149	73236150	chr14:73236150:G:C	rs78387414	G	C	g	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr14	73468174	73468175	chr14:73468175:C:A	rs7158218	C	A	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr14	73523455	73523456	chr14:73523456:T:C	rs4903119	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr14	73526366	73526367	chr14:73526367:C:T	rs116000956	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr14	73601780	73601781	chr14:73601781:G:C	rs57945518	G	C	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr14	73937750	73937751	chr14:73937751:A:G	rs113885060	A	G	A	Sox3.mouse_HMG_3	11	1	-	2.1986828085714523	-3.8859280175304916	AATGAAGGGTATTCTGG
chr14	74220025	74220026	chr14:74220026:T:C	rs7140189	T	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr14	74244545	74244546	chr14:74244546:G:A	rs2024241	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr14	74256522	74256523	chr14:74256523:A:T	rs10144874	A	T	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr14	74334125	74334126	chr14:74334126:C:T	rs76435921	C	T	C	Sox3.mouse_HMG_3	0	1	+	4.748290860428732	6.203161505765596	CGTGAATGTTAGGCATT
chr14	74369841	74369842	chr14:74369842:G:C	rs77682543	G	C	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr14	74473908	74473909	chr14:74473909:C:T	rs1029702	C	T	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr14	74979105	74979106	chr14:74979106:C:T	rs117450745	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr14	75257605	75257606	chr14:75257606:A:T	rs566974962	A	T	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr14	75257641	75257642	chr14:75257642:C:T	rs72719935	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr14	75259149	75259150	chr14:75259150:G:C	rs1022856772	G	C	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr14	75341361	75341362	chr14:75341362:T:A	rs74065103	T	A	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr14	75408521	75408522	chr14:75408522:A:G	rs2103451	A	G	A	Sox3.mouse_HMG_3	1	1	+	5.296420460185867	2.1962905237485755	CATGAAAGATAGTCAAT
chr14	75549325	75549326	chr14:75549326:C:T	rs11626877	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr14	75554700	75554701	chr14:75554701:G:A	rs2215910	G	A	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr14	75564124	75564125	chr14:75564125:T:C	rs8017257	T	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr14	75588341	75588342	chr14:75588342:A:G	rs1288203768	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr14	75654044	75654045	chr14:75654045:A:C	rs118166341	A	C	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr14	76077316	76077317	chr14:76077317:T:C	rs1861922	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr14	76339395	76339396	chr14:76339396:A:G	rs7146132	A	G	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr14	76431426	76431427	chr14:76431427:C:G	rs1077429	C	G	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr14	76759545	76759546	chr14:76759546:A:G	rs113378781	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr14	76760610	76760611	chr14:76760611:G:A	rs189010201	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr14	76816571	76816572	chr14:76816572:A:T	rs6574331	A	T	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr14	76918339	76918340	chr14:76918340:C:T	chr14:76918340:C:T	C	T	C	Sox3.mouse_HMG_3	0	1	+	4.1237742277159395	5.578644873052805	CATGAATGCTATTGCTG
chr14	76947778	76947779	chr14:76947779:A:T	rs1039032603	A	T	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr14	77052232	77052233	chr14:77052233:G:C	rs12588022	G	C	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr14	77109711	77109712	chr14:77109712:G:A	rs75351083	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr14	77163337	77163338	chr14:77163338:C:T	rs158105	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr14	77280468	77280469	chr14:77280469:T:C	rs4540995	T	C	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr14	77280503	77280504	chr14:77280504:C:G	rs71413457	C	G	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr14	77508646	77508647	chr14:77508647:C:T	rs1063271	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr14	77524705	77524706	chr14:77524706:G:C	rs58883103	G	C	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr14	77648066	77648067	chr14:77648067:A:T	rs12898009	A	T	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr14	77648103	77648104	chr14:77648104:T:G	rs12879146	T	G	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr14	77839113	77839114	chr14:77839114:A:G	rs148658352	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr14	77904111	77904112	chr14:77904112:A:G	rs12590199	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.2506896636106766	-4.357260977930121	TGTGAATTCCAGTGAAC
chr14	78007412	78007413	chr14:78007413:G:A	rs118007311	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr14	78367488	78367489	chr14:78367489:T:C	rs34853774	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr14	78637993	78637994	chr14:78637994:C:A	rs17107986	C	A	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr14	78753170	78753171	chr14:78753171:C:T	rs71414767	C	T	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr14	79068965	79068966	chr14:79068966:T:A	rs4903821	T	A	a	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr14	79254272	79254273	chr14:79254273:G:C	chr14:79254273:G:C	G	C	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr14	79434300	79434301	chr14:79434301:C:T	rs776511590	C	T	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr14	80017918	80017919	chr14:80017919:C:A	rs2193132	C	A	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr14	80136478	80136479	chr14:80136479:A:T	rs149879701	A	T	A	Sox3.mouse_HMG_3	5	1	+	2.232555206239237	-4.374885458239475	GCTGCATTTCAGTCAGG
chr14	80173828	80173829	chr14:80173829:C:G	rs225005	C	G	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr14	80175976	80175977	chr14:80175977:C:T	rs2216086	C	T	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr14	80570495	80570496	chr14:80570496:T:C	rs56341421	T	C	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr14	80680049	80680050	chr14:80680050:T:G	rs12885089	T	G	T	Sox3.mouse_HMG_3	15	1	+	1.4339045426165893	-1.6886862684766522	CATGCATTTTAGTCTTG
chr14	81312895	81312896	chr14:81312896:C:T	rs77131560	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr14	81714098	81714099	chr14:81714099:G:A	rs8014728	G	A	A	Sox3.mouse_HMG_3	11	1	+	5.949876752141251	1.2997020263351138	CTTGAGTGTCAGTCATG
chr14	81816229	81816230	chr14:81816230:T:C	rs7142467	T	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr14	81903709	81903710	chr14:81903710:G:A	rs11849857	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr14	82075777	82075778	chr14:82075778:A:C	chr14:82075778:A:C	A	C	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr14	82104611	82104612	chr14:82104612:A:G	rs11626408	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.1530479988030846	-4.454902642737713	ATTTAATGGCATGCATA
chr14	82500625	82500626	chr14:82500626:C:A	rs1911223	C	A	C	Sox3.mouse_HMG_3	3	1	-	1.4890590334213498	-5.417435451093365	AAGGTATTTTATTCATC
chr14	82933791	82933792	chr14:82933792:T:A	rs78586906	T	A	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr14	83122466	83122467	chr14:83122467:T:A	rs11850544	T	A	T	Sox3.mouse_HMG_3	12	1	+	2.132370306847048	-3.9804405528801823	AATAAATGACTTTCAGA
chr14	83128193	83128194	chr14:83128194:A:G	rs7155023	A	G	G	Sox3.mouse_HMG_3	11	1	-	3.1489151072035604	-2.935695718898386	ATAGAATGGTGTTCATG
chr14	83301261	83301262	chr14:83301262:A:T	rs61982340	A	T	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr14	84042296	84042297	chr14:84042297:C:T	rs17729686	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr14	84112724	84112725	chr14:84112725:T:G	rs7159548	T	G	T	Sox3.mouse_HMG_3	16	1	-	1.3356802616068901	-0.682235537617885	AGTGCATTGTATTCTTA
chr14	84162328	84162329	chr14:84162329:T:C	rs7160136	T	C	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr14	84258574	84258575	chr14:84258575:C:T	rs11627969	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr14	84647221	84647222	chr14:84647222:C:T	rs17258240	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr14	84743078	84743079	chr14:84743079:C:T	rs17258331	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr14	84760791	84760792	chr14:84760792:G:A	rs557988019	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr14	85040110	85040111	chr14:85040111:A:G	rs113585774	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr14	85182135	85182136	chr14:85182136:G:T	rs76371777	G	T	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr14	85182140	85182141	chr14:85182141:T:C	rs1628501	T	C	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr14	85274150	85274151	chr14:85274151:T:C	rs1375575	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr14	85313864	85313865	chr14:85313865:A:G	rs59474350	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr14	85357181	85357182	chr14:85357182:T:C	rs10144610	T	C	T	Sox3.mouse_HMG_3	15	1	+	3.7475028697971196	-0.9668905419179484	AATGAATTGAGTTCATT
chr14	85365478	85365479	chr14:85365479:T:G	rs61980102	T	G	T	Sox3.mouse_HMG_3	6	1	+	1.1543886856151537	-5.596662799566318	CTTGATTGCTATGCATG
chr14	85472126	85472127	chr14:85472127:T:C	rs11852209	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr14	85577427	85577428	chr14:85577428:C:T	rs116919191	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr14	85905279	85905280	chr14:85905280:T:C	rs117015478	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr14	86124136	86124137	chr14:86124137:G:A	rs2153493	G	A	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr14	86300422	86300423	chr14:86300423:G:A	rs12890313	G	A	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr14	86396188	86396189	chr14:86396189:G:A	rs8010573	G	A	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr14	86621413	86621414	chr14:86621414:T:A	rs73323649	T	A	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr14	86693985	86693986	chr14:86693986:G:T	rs67484906	G	T	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr14	86732264	86732265	chr14:86732265:T:C	rs56055505	T	C	T	Sox3.mouse_HMG_3	0	1	-	2.788572577948492	3.613856479094836	AATGAAAGGCATTGAAA
chr14	86766712	86766713	chr14:86766713:T:C	rs74071357	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr14	86998786	86998787	chr14:86998787:A:G	rs75079774	A	G	G	Sox3.mouse_HMG_3	16	1	+	3.3628532381099205	3.398793694562446	AATCAAATTTATTCATA
chr14	87029210	87029211	chr14:87029211:C:T	rs56167623	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr14	87058376	87058377	chr14:87058377:G:A	rs58028837	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr14	87489507	87489508	chr14:87489508:T:C	rs28589574	T	C	T	Sox3.mouse_HMG_3	15	1	+	5.113205052924163	0.3988116412090946	TTTGAAATTTAGTCATT
chr14	87541910	87541911	chr14:87541911:A:G	rs10139298	A	G	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr14	87870343	87870344	chr14:87870344:T:C	rs144216447	T	C	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr14	88003704	88003705	chr14:88003705:G:T	rs9671908	G	T	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr14	88096637	88096638	chr14:88096638:C:T	rs751072	C	T	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr14	88327257	88327258	chr14:88327258:A:G	rs11626737	A	G	A	Sox3.mouse_HMG_3	14	1	+	0.7042953847817899	-5.677650781645121	AAAGAACTGCAGTCAGG
chr14	88481175	88481176	chr14:88481176:G:C	rs73314151	G	C	g	Sox3.mouse_HMG_3	8	1	-	2.3669404585365372	2.809723127214469	AAAGAATGCCTTTCAGA
chr14	88481183	88481184	chr14:88481184:T:C	rs73314152	T	C	t	Sox3.mouse_HMG_3	0	1	-	2.3669404585365372	3.192224359682881	AAAGAATGCCTTTCAGA
chr14	88559031	88559032	chr14:88559032:A:G	rs12436642	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr14	88950285	88950286	chr14:88950286:T:G	rs1107500	T	G	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr14	88976750	88976751	chr14:88976751:A:G	rs7148180	A	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr14	88999189	88999190	chr14:88999190:C:A	rs1287644	C	A	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr14	89033751	89033752	chr14:89033752:C:T	rs146709390	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr14	89137604	89137605	chr14:89137605:C:T	rs61301380	C	T	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr14	89291581	89291582	chr14:89291582:A:G	rs4904535	A	G	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr14	89310196	89310197	chr14:89310197:T:G	rs75067100	T	G	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr14	89335355	89335356	chr14:89335356:G:A	rs12882047	G	A	A	Sox3.mouse_HMG_3	9	1	-	1.2367698791782944	1.2444065561700404	TAGGAATGACACTCAGT
chr14	89432405	89432406	chr14:89432406:A:C	rs4904574	A	C	A	Sox3.mouse_HMG_3	16	1	-	0.7752943667365394	1.9622238829415612	TTTGGATCGCAGTCATT
chr14	89432825	89432826	chr14:89432826:T:G	rs4899993	T	G	T	Sox3.mouse_HMG_3	10	1	-	4.428619022390608	-2.3224324627908626	GAAGAATGCTATGCAAA
chr14	89441379	89441380	chr14:89441380:A:T	rs186104122	A	T	A	Sox3.mouse_HMG_3	6	1	-	1.1159637949934957	-5.635087690187976	GGTGAATGGTATGAAAA
chr14	89442827	89442828	chr14:89442828:A:G	rs1959450	A	G	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr14	89476899	89476900	chr14:89476900:G:A	rs59385441	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr14	89549638	89549639	chr14:89549639:A:G	rs35836300	A	G	A	Sox3.mouse_HMG_3	6	1	-	3.0243687767056207	-3.5835818648351774	AATAAATTGGATTCAAT
chr14	89589123	89589124	chr14:89589124:G:T	rs35889227	G	T	G	Sox3.mouse_HMG_3	3	1	+	5.953571633167128	-0.9529228513475848	TTTGAACTGCAGTCATT
chr14	89589130	89589131	chr14:89589131:A:G	rs4900005	A	G	A	Sox3.mouse_HMG_3	10	1	+	5.953571633167128	-0.6543790083736688	TTTGAACTGCAGTCATT
chr14	90247658	90247659	chr14:90247659:G:A	rs11621045	G	A	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr14	90369280	90369281	chr14:90369281:C:T	rs11159965	C	T	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr14	90399117	90399118	chr14:90399118:C:G	rs2300498	C	G	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr14	90419575	90419576	chr14:90419576:A:C	rs369017956	A	C	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr14	90475362	90475363	chr14:90475363:G:A	rs8005464	G	A	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr14	90475409	90475410	chr14:90475410:T:A	rs1955910	T	A	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr14	90570639	90570640	chr14:90570640:C:T	rs1286492	C	T	C	Sox3.mouse_HMG_3	15	1	+	1.741721247057654	6.456114658772722	AGTGAAAGTCAGTCACG
chr14	90616451	90616452	chr14:90616452:C:A	rs114419451	C	A	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr14	90616452	90616453	chr14:90616453:G:A	rs12588994	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr14	90657499	90657500	chr14:90657500:C:T	rs3742658	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr14	90763246	90763247	chr14:90763247:C:T	rs9944015	C	T	T	Sox3.mouse_HMG_3	0	1	-	8.899369775418517	8.074085874272171	GTTGAATGATTTTCATA
chr14	90828886	90828887	chr14:90828887:C:T	rs974591784	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr14	90843215	90843216	chr14:90843216:C:T	rs11159980	C	T	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr14	91090350	91090351	chr14:91090351:G:A	rs77314340	G	A	G	Sox3.mouse_HMG_3	11	1	+	4.186289348861097	-0.4638853769450416	GTTGAATGACAGTGAAT
chr14	91126903	91126904	chr14:91126904:C:T	rs7146000	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr14	91238758	91238759	chr14:91238759:T:G	rs933529	T	G	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr14	91728837	91728838	chr14:91728838:G:A	rs11621684	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr14	92263562	92263563	chr14:92263563:T:G	rs4904855	T	G	T	Sox3.mouse_HMG_3	10	1	-	4.198021199624951	-2.5530302855565195	AAAGAATGTCAGTCCTG
chr14	92309844	92309845	chr14:92309845:G:A	rs58056224	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr14	92428602	92428603	chr14:92428603:C:G	rs8010788	C	G	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr14	92483610	92483611	chr14:92483611:G:A	rs12589691	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr14	92660005	92660006	chr14:92660006:C:T	rs112668484	C	T	C	Sox3.mouse_HMG_3	6	1	+	1.6319682492279945	8.239918890768791	TAAGAACGCCAGTCAGA
chr14	92695218	92695219	chr14:92695219:T:C	rs80030123	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr14	92793656	92793657	chr14:92793657:A:G	rs4904986	A	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr14	92957883	92957884	chr14:92957884:G:A	rs12894234	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr14	92973563	92973564	chr14:92973564:A:G	rs2402227	A	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr14	92973565	92973566	chr14:92973566:G:A	rs3783918	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr14	92973618	92973619	chr14:92973619:C:T	rs80109515	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr14	93331551	93331552	chr14:93331552:C:G	rs573854894	C	G	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr14	93565089	93565090	chr14:93565090:T:G	rs13329061	T	G	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr14	93817091	93817092	chr14:93817092:G:A	rs7147221	G	A	G	Sox3.mouse_HMG_3	5	1	-	3.5476129619342016	3.5476129619342016	GATGACTTTTATTAATT
chr14	93880064	93880065	chr14:93880065:T:C	rs72696696	T	C	T	Sox3.mouse_HMG_3	5	1	-	3.5718241014917713	-2.917010820579093	CATGAAGTACAGTCAAC
chr14	93975854	93975855	chr14:93975855:A:G	rs78319443	A	G	A	Sox3.mouse_HMG_3	5	1	+	4.4232759987365045	-2.0655589233343585	CATGCATGGTATTCTTG
chr14	93975914	93975915	chr14:93975915:T:G	rs72700358	T	G	T	Sox3.mouse_HMG_3	1	1	-	5.218412186491758	1.0415526726358637	GAGGAATGTTATTTATG
chr14	93995579	93995580	chr14:93995580:G:A	rs113799904	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr14	94082150	94082151	chr14:94082151:T:C	rs7153103	T	C	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr14	94171538	94171539	chr14:94171539:T:A	rs75404723	T	A	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr14	94174475	94174476	chr14:94174476:C:T	rs114546840	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr14	94288891	94288892	chr14:94288892:C:T	rs141650479	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr14	94407433	94407434	chr14:94407434:G:A	rs8020968	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr14	94582469	94582470	chr14:94582470:G:C	rs151125315	G	C	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr14	94596236	94596237	chr14:94596237:G:C	rs1076756	G	C	C	Sox3.mouse_HMG_3	8	1	-	7.74739572035684	8.190178389034772	GATGAATTCTTGTCATC
chr14	94650249	94650250	chr14:94650250:A:T	rs72696818	A	T	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr14	94655068	94655069	chr14:94655069:A:G	rs35251428	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr14	94738939	94738940	chr14:94738940:G:A	rs8016591	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr14	94822300	94822301	chr14:94822301:G:A	rs748752	G	A	G	Sox3.mouse_HMG_3	5	1	-	1.531517369476324	1.531517369476324	AATGACGTCCATTCAAG
chr14	95197648	95197649	chr14:95197649:C:T	rs1187628	C	T	T	Sox3.mouse_HMG_3	3	1	-	3.713700134452722	-2.067864753076509	AATGCATGCTAGACATG
chr14	95273868	95273869	chr14:95273869:G:A	rs78601644	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr14	95277016	95277017	chr14:95277017:T:C	rs10129405	T	C	C	Sox3.mouse_HMG_3	5	1	-	1.467826032128535	-5.021008889942331	TCTGAATGGCTTTGATG
chr14	95291996	95291997	chr14:95291997:T:C	rs141259797	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr14	95292221	95292222	chr14:95292222:A:G	rs2144817	A	G	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr14	95323782	95323783	chr14:95323783:G:A	rs79560642	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr14	95445497	95445498	chr14:95445498:T:C	rs10144421	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr14	95617442	95617443	chr14:95617443:T:C	rs11850802	T	C	t	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr14	95817825	95817826	chr14:95817826:C:T	rs35085161	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr14	95998773	95998774	chr14:95998774:T:C	rs72702817	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr14	96029537	96029538	chr14:96029538:A:G	rs4274360	A	G	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr14	96068361	96068362	chr14:96068362:T:C	rs10131593	T	C	C	Sox3.mouse_HMG_3	10	1	-	-0.16155663517498442	-6.769507276715781	TGGGAATGGCATCCAGG
chr14	96261664	96261665	chr14:96261665:A:G	rs10137303	A	G	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr14	96423003	96423004	chr14:96423004:G:A	rs77196766	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr14	96436356	96436357	chr14:96436357:C:G	rs76675423	C	G	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr14	96629813	96629814	chr14:96629814:A:G	rs75113600	A	G	a	Sox3.mouse_HMG_3	5	1	+	4.705866040690572	-1.7829688813802926	GATGCATGGCAGGCATG
chr14	96750095	96750096	chr14:96750096:C:A	rs4900342	C	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr14	97297503	97297504	chr14:97297504:T:C	rs10138125	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr14	97603100	97603101	chr14:97603101:C:T	rs8005344	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr14	97781424	97781425	chr14:97781425:T:A	rs7155898	T	A	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr14	98012266	98012267	chr14:98012267:G:A	rs876188	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr14	98131040	98131041	chr14:98131041:G:A	rs79658321	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr14	98142651	98142652	chr14:98142652:C:A	rs76613670	C	A	C	Sox3.mouse_HMG_3	16	1	-	3.3591815529210702	2.1722520367160483	GATGAATGAAATACAGG
chr14	98182926	98182927	chr14:98182927:T:C	rs781034008	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr14	98185129	98185130	chr14:98185130:A:G	rs7159845	A	G	a	Sox3.mouse_HMG_3	16	1	+	0.9458043069737658	0.9817447634262915	GATGAATGCCCTTCCCA
chr14	98193007	98193008	chr14:98193008:C:T	rs17096707	C	T	C	Sox3.mouse_HMG_3	0	1	-	0.7944755387776399	-0.030808362368704545	GGAGAATGCCAATCAGG
chr14	98270553	98270554	chr14:98270554:A:G	rs80297489	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr14	98304880	98304881	chr14:98304881:T:C	rs8013791	T	C	T	Sox3.mouse_HMG_3	12	1	+	1.4135940400287497	-4.779259527372017	CATAAATGACATTGAGG
chr14	98454448	98454449	chr14:98454449:T:G	rs66725269	T	G	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr14	98671297	98671298	chr14:98671298:A:G	rs1950476	A	G	A	Sox3.mouse_HMG_3	16	1	+	10.96103726212846	10.996977718580986	AATGAATTGTATTTATA
chr14	98684473	98684474	chr14:98684474:A:C	rs7143013	A	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr14	98890898	98890899	chr14:98890899:C:T	rs17097980	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr14	99079047	99079048	chr14:99079048:A:C	rs7157886	A	C	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr14	99120414	99120415	chr14:99120415:A:G	rs140837773	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.6344125417019306	-3.079980870013138	GGTGGATTTTATTTATG
chr14	99134572	99134573	chr14:99134573:C:T	rs55727874	C	T	c	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr14	99177949	99177950	chr14:99177950:T:C	rs710305	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr14	99276840	99276841	chr14:99276841:A:C	rs8004151	A	C	C	Sox3.mouse_HMG_3	9	1	-	2.874279648635532	-2.4732860357307773	AGTGAATTTTATTTAAC
chr14	99328050	99328051	chr14:99328051:T:C	rs117586150	T	C	T	Sox3.mouse_HMG_3	16	1	+	2.594025747719554	1.7270990082472752	GATGAATTCCAGGAATT
chr14	99426280	99426281	chr14:99426281:C:T	rs12590989	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr14	99735259	99735260	chr14:99735260:T:C	rs187479934	T	C	T	Sox3.mouse_HMG_3	2	1	+	0.6685513248444621	-5.93732779338647	CATGGAGGACATTCAGG
chr14	99780012	99780013	chr14:99780013:G:A	rs11160549	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr14	99875083	99875084	chr14:99875084:C:T	rs79232945	C	T	C	Sox3.mouse_HMG_3	11	1	-	5.562721297881616	0.9125465720754754	GATGAATGGTAGGCACT
chr14	99875096	99875097	chr14:99875097:A:C	rs7152170	A	C	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr14	99885487	99885488	chr14:99885488:A:G	rs1191109	A	G	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr14	99986672	99986673	chr14:99986673:G:A	rs74629714	G	A	G	Sox3.mouse_HMG_3	16	1	+	4.551499114866492	4.515558658413966	TATGAATTGAAGACATG
chr14	100122147	100122148	chr14:100122148:G:A	rs11849414	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr14	100532945	100532946	chr14:100532946:G:A	rs7493670	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr14	100692471	100692472	chr14:100692472:C:G	rs12880358	C	G	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr14	100988668	100988669	chr14:100988669:C:A	rs8021854	C	A	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr14	101066755	101066756	chr14:101066756:C:T	rs58834075	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr14	101760335	101760336	chr14:101760336:G:A	rs117677655	G	A	.	Sox3.mouse_HMG_3	0	1	+	1.433685003330542	0.6084011021841982	GGTGACTCCCAGTCATG
chr14	101760348	101760349	chr14:101760349:C:T	chr14:101760349:C:T	C	T	.	Sox3.mouse_HMG_3	13	1	+	1.433685003330542	-5.173575607131478	GGTGACTCCCAGTCATG
chr14	101810488	101810489	chr14:101810489:G:A	chr14:101810489:G:A	G	A	G	Sox3.mouse_HMG_3	11	1	+	13.828918185356027	9.178743459549889	GATGAATTGCAGTCAGA
chr14	101849104	101849105	chr14:101849105:A:G	rs147209738	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr14	101895376	101895377	chr14:101895377:G:A	rs28425501	G	A	G	Sox3.mouse_HMG_3	15	1	-	7.201065142341439	11.915458554056507	TATGAATGTCATTAACG
chr14	102006259	102006260	chr14:102006260:A:G	rs17512327	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr14	102080767	102080768	chr14:102080768:A:G	rs1059629	A	G	g	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr14	102344433	102344434	chr14:102344434:T:C	rs117621502	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr14	102764277	102764278	chr14:102764278:G:A	rs181381449	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr14	102778608	102778609	chr14:102778609:A:G	rs1237179000	A	G	A	Sox3.mouse_HMG_3	15	1	-	10.7523276580119	6.037934246296833	AATGAATTATATCCATA
chr14	102824693	102824694	chr14:102824694:G:A	rs2144826	G	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr14	102827940	102827941	chr14:102827941:C:T	rs71417830	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr14	102908104	102908105	chr14:102908105:C:T	rs117653635	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr14	103052656	103052657	chr14:103052657:T:C	rs75817380	T	C	T	Sox3.mouse_HMG_3	9	1	+	11.080245076996704	11.072608400004956	GATTAATTCTATTCATG
chr14	103186629	103186630	chr14:103186630:C:T	rs151036716	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr14	103209022	103209023	chr14:103209023:T:G	rs2763540	T	G	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr14	103213647	103213648	chr14:103213648:A:G	rs2763547	A	G	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr14	103248329	103248330	chr14:103248330:C:T	rs11625866	C	T	C	Sox3.mouse_HMG_3	9	1	+	1.5104864983938497	1.5181231753855957	CAGGAATTACAGGCATG
chr14	103494288	103494289	chr14:103494289:C:T	rs4900580	C	T	c	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr14	103508626	103508627	chr14:103508627:C:T	rs2756128	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr14	103840100	103840101	chr14:103840101:T:C	rs17101871	T	C	T	Sox3.mouse_HMG_3	1	1	-	1.9318093314603526	-1.1683206049769395	TATGACTGTTGTTCAGA
chr14	104049035	104049036	chr14:104049036:C:T	rs77059054	C	T	C	Sox3.mouse_HMG_3	11	1	+	0.8581605713976077	6.942771397499554	AATGAATGCTTCTCAAC
chr14	104187616	104187617	chr14:104187617:A:G	rs546426230	A	G	A	Sox3.mouse_HMG_3	10	1	+	3.3863066715856123	-3.2216439699551866	GATGAATGGCATGCGGG
chr14	104195603	104195604	chr14:104195604:C:G	rs4509954	C	G	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr14	104267643	104267644	chr14:104267644:A:G	rs13313386	A	G	A	Sox3.mouse_HMG_3	0	1	-	4.173096706052965	2.7182260607161006	TATCAATTACATTTATG
chr14	104442931	104442932	chr14:104442932:G:A	rs28441667	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr14	104442980	104442981	chr14:104442981:G:A	rs146174130	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr14	104859493	104859494	chr14:104859494:C:T	rs111063723	C	T	-	Sox3.mouse_HMG_3	16	1	-	4.6299078201207955	4.59396736366827	GATGAATGGTGGTGATG
chr14	104859911	104859912	chr14:104859912:C:T	rs145860637	C	T	-	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr14	104900383	104900384	chr14:104900384:T:A	rs2582538	T	A	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr14	105081270	105081271	chr14:105081271:A:G	rs972636031	A	G	a	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr14	105139305	105139306	chr14:105139306:G:A	rs2735800	G	A	g	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr14	105242132	105242133	chr14:105242133:A:G	rs2816651	A	G	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr14	105242134	105242135	chr14:105242135:C:T	rs2735829	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr14	105261237	105261238	chr14:105261238:A:G	rs2735812	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr14	106354462	106354463	chr14:106354463:A:G	rs73367617	A	G	g	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr14	106539509	106539510	chr14:106539510:A:T	rs7160063	A	T	N	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr15	20232724	20232725	chr15:20232725:G:A	rs4347598	G	A	.	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr15	20232743	20232744	chr15:20232744:G:A	rs11857524	G	A	.	Sox3.mouse_HMG_3	7	1	+	4.737890152260783	-1.815658562396945	TGTGAACGGCAGTCAGG
chr15	20242555	20242556	chr15:20242556:C:G	rs9672806	C	G	.	Sox3.mouse_HMG_3	0	1	+	0.3680584148496382	2.091849913986257	CAAGAATGGGATACATG
chr15	20258397	20258398	chr15:20258398:C:T	rs8033265	C	T	c	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr15	20267020	20267021	chr15:20267021:G:A	rs7177785	G	A	g	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr15	20280837	20280838	chr15:20280838:C:T	rs55829299	C	T	c	Sox3.mouse_HMG_3	0	1	-	3.638067157102763	2.812783255956419	GGTGAATTACCTTCAGT
chr15	20378709	20378710	chr15:20378710:T:C	rs74004846	T	C	.	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr15	20391132	20391133	chr15:20391133:T:C	rs61254862	T	C	.	Sox3.mouse_HMG_3	15	1	+	3.568759651743767	-1.1456337599713013	GTAGAATGACATTAATG
chr15	20646694	20646695	chr15:20646695:C:T	rs111647465	C	T	.	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr15	20646711	20646712	chr15:20646712:A:G	rs867090238	A	G	.	Sox3.mouse_HMG_3	6	1	-	3.169992152361755	-3.4379584891790422	GATGCATGGCATCCAGA
chr15	20646723	20646724	chr15:20646724:G:A	rs867368521	G	A	.	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr15	20667588	20667589	chr15:20667589:G:C	rs7496816	G	C	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr15	21053262	21053263	chr15:21053263:C:G	rs76757327	C	G	c	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr15	21267768	21267769	chr15:21267769:A:G	rs3908132	A	G	a	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr15	21267788	21267789	chr15:21267789:A:G	rs1878996	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr15	21268979	21268980	chr15:21268980:G:A	rs1814943	G	A	A	Sox3.mouse_HMG_3	7	1	+	2.2754521692204284	-4.2780965454372994	TATGGATGCTTTTCAGA
chr15	22242721	22242722	chr15:22242722:T:A	rs7171525	T	A	T	Sox3.mouse_HMG_3	15	1	+	4.817413259022532	2.553603794785711	TATGAATTATATATATG
chr15	22787453	22787454	chr15:22787454:G:T	rs76483819	G	T	g	Sox3.mouse_HMG_3	13	1	-	3.885661313800566	-2.4969753601768097	GATCACTTGTATTCATT
chr15	22851673	22851674	chr15:22851674:C:T	rs117894530	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr15	22988443	22988444	chr15:22988444:G:T	rs73411378	G	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr15	23037512	23037513	chr15:23037513:A:T	rs73409372	A	T	a	Sox3.mouse_HMG_3	12	1	-	3.6383070356110077	-2.4745038241162227	TAAAAATGTTATTCAGA
chr15	24106723	24106724	chr15:24106724:T:A	rs58078746	T	A	t	Sox3.mouse_HMG_3	2	1	+	2.616033994499869	-3.111294719839755	AATGACTTCTTTTCATT
chr15	24413302	24413303	chr15:24413303:T:C	rs34192001	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr15	25032640	25032641	chr15:25032641:A:G	rs1030389	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr15	25059375	25059376	chr15:25059376:C:A	rs113299104	C	A	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr15	25505775	25505776	chr15:25505776:C:T	rs66549714	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr15	25706155	25706156	chr15:25706156:G:A	rs73361200	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr15	25776608	25776609	chr15:25776609:C:G	rs76719748	C	G	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr15	25822438	25822439	chr15:25822439:C:T	rs11630331	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr15	25831559	25831560	chr15:25831560:A:G	rs74767497	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr15	25933535	25933536	chr15:25933536:C:A	rs7177666	C	A	C	Sox3.mouse_HMG_3	11	1	-	4.728006493030033	6.16244259332584	ACCGAATTATAGTCATA
chr15	25971222	25971223	chr15:25971223:C:T	rs10162861	C	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr15	25971226	25971227	chr15:25971227:G:C	rs56344140	G	C	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr15	25971261	25971262	chr15:25971262:C:T	rs10162866	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr15	26052195	26052196	chr15:26052196:C:T	rs56386615	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr15	26318943	26318944	chr15:26318944:C:T	rs8034111	C	T	T	Sox3.mouse_HMG_3	7	1	-	1.5796393588089177	-4.97390935584881	GATTAATGTCAGTAAAG
chr15	26390463	26390464	chr15:26390464:T:A	rs8036567	T	A	T	Sox3.mouse_HMG_3	8	1	-	2.8148626951520663	2.7330769287358416	GTTGAATGACCTACATG
chr15	26633624	26633625	chr15:26633625:A:T	rs7162732	A	T	A	Sox3.mouse_HMG_3	6	1	-	1.2080310646723416	-5.54302042050913	AGTTAATTGCATTCTTG
chr15	26713629	26713630	chr15:26713630:A:G	rs11632969	A	G	G	Sox3.mouse_HMG_3	6	1	-	1.2159059451611713	-5.392044696379626	TGTCCATGGCATTCATT
chr15	26864565	26864566	chr15:26864566:A:C	rs933384851	A	C	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr15	26889551	26889552	chr15:26889552:C:T	rs143190488	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr15	26944020	26944021	chr15:26944021:G:A	rs6422906	G	A	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr15	27061749	27061750	chr15:27061750:C:T	chr15:27061750:C:T	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr15	27232359	27232360	chr15:27232360:G:A	rs145165017	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr15	27263662	27263663	chr15:27263663:G:A	rs8043244	G	A	G	Sox3.mouse_HMG_3	15	1	+	4.138126523022806	4.996907869879227	AGTTAATGGTATTCAGT
chr15	27263714	27263715	chr15:27263715:A:G	rs8041079	A	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr15	27426944	27426945	chr15:27426945:C:T	rs10152507	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr15	27867993	27867994	chr15:27867994:C:A	rs4476137	C	A	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr15	27977633	27977634	chr15:27977634:G:A	rs11631735	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr15	28049879	28049880	chr15:28049880:C:T	rs1597197	C	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr15	28890791	28890792	chr15:28890792:T:C	rs149088908	T	C	t	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr15	28944218	28944219	chr15:28944219:C:T	rs2336909	C	T	T	Sox3.mouse_HMG_3	9	1	+	1.8874576448320104	1.8950943218237564	CATGAATTGCGGTCACC
chr15	29158140	29158141	chr15:29158141:C:A	rs9635309	C	A	A	Sox3.mouse_HMG_3	0	1	-	2.636531971512464	2.36761111771271	GTAGAAAGGCATTCATT
chr15	29196863	29196864	chr15:29196864:G:A	rs2590737	G	A	A	Sox3.mouse_HMG_3	7	1	+	1.9359930612147813	-4.617555653442946	ATTGAAAGTCACTCATG
chr15	29280659	29280660	chr15:29280660:G:A	rs11071833	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr15	29423487	29423488	chr15:29423488:G:T	rs818089	G	T	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr15	29815678	29815679	chr15:29815679:G:A	rs77585102	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr15	29826320	29826321	chr15:29826321:C:G	rs11634700	C	G	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr15	30661512	30661513	chr15:30661513:G:A	rs7178789	G	A	.	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr15	30971524	30971525	chr15:30971525:G:A	rs1404469	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr15	30992409	30992410	chr15:30992410:A:G	rs79097619	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr15	31002510	31002511	chr15:31002511:C:A	rs3784589	C	A	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr15	31116886	31116887	chr15:31116887:C:T	rs2879275	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr15	31303907	31303908	chr15:31303908:T:C	rs16956682	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr15	31513616	31513617	chr15:31513617:G:A	rs28583941	G	A	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr15	31528708	31528709	chr15:31528709:G:A	rs8039067	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr15	31585300	31585301	chr15:31585301:T:C	rs11071199	T	C	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr15	31633672	31633673	chr15:31633673:T:G	rs117902013	T	G	T	Sox3.mouse_HMG_3	14	1	-	0.5607031078177092	-5.821243058609202	AGTGAAGGGTGGTCATG
chr15	31817969	31817970	chr15:31817970:G:C	rs11631016	G	C	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr15	31974742	31974743	chr15:31974743:G:C	rs566899189	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr15	32662893	32662894	chr15:32662894:C:T	rs11071887	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr15	32725346	32725347	chr15:32725347:A:G	rs75799490	A	G	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr15	32793066	32793067	chr15:32793067:T:G	rs1258753	T	G	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr15	32866584	32866585	chr15:32866585:G:A	rs8038990	G	A	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr15	32898935	32898936	chr15:32898936:G:C	rs139757565	G	C	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr15	32952293	32952294	chr15:32952294:A:C	rs75952503	A	C	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr15	33040119	33040120	chr15:33040120:T:C	rs8028114	T	C	T	Sox3.mouse_HMG_3	14	1	-	12.274706811714626	5.892760645287713	TATGAATGATATACATG
chr15	33056732	33056733	chr15:33056733:G:A	rs28750521	G	A	A	Sox3.mouse_HMG_3	0	1	+	1.29879532506906	0.4735114239227136	GTTGCAATATATTCATA
chr15	33126141	33126142	chr15:33126142:A:C	rs34830403	A	C	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr15	33126164	33126165	chr15:33126165:G:A	rs534132939	G	A	G	Sox3.mouse_HMG_3	10	1	-	-0.6063304720206399	-0.6063304720206399	GATGTATGCTCCTCATG
chr15	33186316	33186317	chr15:33186317:A:G	rs11632332	A	G	G	Sox3.mouse_HMG_3	9	1	-	-0.21665454412575547	-0.22429122111750188	CATGATTGGTGGTCAGG
chr15	33201179	33201180	chr15:33201180:G:A	rs114763903	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr15	33380735	33380736	chr15:33380736:G:A	rs567578908	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr15	33462338	33462339	chr15:33462339:G:A	rs2676093	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr15	33587103	33587104	chr15:33587104:G:T	rs66863103	G	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr15	33587107	33587108	chr15:33587108:G:A	rs72709272	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr15	33739333	33739334	chr15:33739334:T:C	rs72713287	T	C	T	Sox3.mouse_HMG_3	14	1	-	13.157513217472065	6.775567051045154	AATGAATTTCAGTCAAA
chr15	33865878	33865879	chr15:33865879:G:C	rs182087515	G	C	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr15	33964524	33964525	chr15:33964525:C:A	rs637055	C	A	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr15	34116882	34116883	chr15:34116883:T:C	rs7173845	T	C	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr15	34789149	34789150	chr15:34789150:C:G	rs189725849	C	G	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr15	34790023	34790024	chr15:34790024:C:T	rs1370154	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr15	34791598	34791599	chr15:34791599:C:T	rs62006139	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr15	34810001	34810002	chr15:34810002:G:A	rs11852345	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr15	35149598	35149599	chr15:35149599:C:T	rs10162978	C	T	C	Sox3.mouse_HMG_3	16	1	-	4.038936238335603	4.002995781883078	AGTGCATGGCAGTCAGG
chr15	35149604	35149605	chr15:35149605:T:C	rs10163120	T	C	C	Sox3.mouse_HMG_3	10	1	-	4.038936238335603	-2.569014403205194	AGTGCATGGCAGTCAGG
chr15	35168723	35168724	chr15:35168724:G:A	rs12917029	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr15	35192804	35192805	chr15:35192805:A:G	rs55763113	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr15	35445220	35445221	chr15:35445221:A:G	rs16960945	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr15	35505679	35505680	chr15:35505680:G:A	rs1443823	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr15	35508408	35508409	chr15:35508409:G:A	rs8035581	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr15	35557367	35557368	chr15:35557368:A:G	rs75881216	A	G	A	Sox3.mouse_HMG_3	6	1	-	0.9238607971156595	-5.684089844425136	TGTCTATGCTATTCATT
chr15	35691990	35691991	chr15:35691991:A:G	rs955431	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr15	35753453	35753454	chr15:35753454:G:C	rs149135772	G	C	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr15	35774871	35774872	chr15:35774872:A:G	rs1846135	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr15	35873260	35873261	chr15:35873261:C:T	rs12439755	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr15	35873264	35873265	chr15:35873265:G:A	rs12439576	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr15	35933536	35933537	chr15:35933537:A:C	rs11073131	A	C	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr15	35987844	35987845	chr15:35987845:T:A	rs1030976087	T	A	T	Sox3.mouse_HMG_3	7	1	+	4.872892547707174	-0.8306232247204817	ATGGAATTTCATTCAAA
chr15	36106834	36106835	chr15:36106835:A:G	rs12592136	A	G	A	Sox3.mouse_HMG_3	12	1	-	3.980343432581588	-2.212510134819179	AAAGAATGTTAGTGATG
chr15	36109982	36109983	chr15:36109983:G:A	rs11854628	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr15	36156961	36156962	chr15:36156962:A:G	rs142171849	A	G	A	Sox3.mouse_HMG_3	1	1	+	5.207028725328517	2.106898788891226	TATGAAGTCCAGTCAAC
chr15	36208062	36208063	chr15:36208063:C:A	rs17630229	C	A	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr15	36445994	36445995	chr15:36445995:T:A	rs16963095	T	A	T	Sox3.mouse_HMG_3	14	1	-	1.3848594433772352	-4.997086723049676	ATTGATTGTTTTTCATA
chr15	36545257	36545258	chr15:36545258:A:G	rs755416	A	G	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr15	36749007	36749008	chr15:36749008:G:A	rs74008764	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr15	36936839	36936840	chr15:36936840:T:C	chr15:36936840:T:C	T	C	T	Sox3.mouse_HMG_3	11	1	+	0.7772485971900627	-5.307362228911883	CATTCATTGCATTCAAG
chr15	36964675	36964676	chr15:36964676:C:T	rs1194772	C	T	T	Sox3.mouse_HMG_3	16	1	-	7.2263881240936	7.190447667641075	TTGGAATGACAGTCATG
chr15	36978369	36978370	chr15:36978370:T:C	rs74008819	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr15	37138734	37138735	chr15:37138735:T:C	rs2381964	T	C	C	Sox3.mouse_HMG_3	5	1	-	3.045609226138917	-3.443225695931946	CTTGTATGATATTCAGT
chr15	37139152	37139153	chr15:37139153:G:A	rs74008860	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr15	37199065	37199066	chr15:37199066:G:A	rs62047767	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr15	37204835	37204836	chr15:37204836:C:T	rs28375996	C	T	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr15	37204841	37204842	chr15:37204842:G:C	rs28552976	G	C	C	Sox3.mouse_HMG_3	3	1	+	2.969982698276958	-3.7795080374280943	TAAGTATGGCAGTCAAG
chr15	37254172	37254173	chr15:37254173:T:C	rs28515860	T	C	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr15	37880872	37880873	chr15:37880873:T:C	rs7166627	T	C	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr15	38068984	38068985	chr15:38068985:A:G	rs116133181	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr15	38279233	38279234	chr15:38279234:C:T	rs11073311	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr15	38406415	38406416	chr15:38406416:T:C	rs4293334	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr15	38464921	38464922	chr15:38464922:C:T	rs11856370	C	T	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr15	38817771	38817772	chr15:38817772:T:C	chr15:38817772:T:C	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr15	38817796	38817797	chr15:38817797:C:T	rs16967514	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr15	38886552	38886553	chr15:38886553:G:A	rs7496821	G	A	G	Sox3.mouse_HMG_3	7	1	+	2.308609329767349	-4.2449393848903805	TTTTAATGTTACTCATA
chr15	38886586	38886587	chr15:38886587:G:A	rs11629503	G	A	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr15	39079858	39079859	chr15:39079859:C:T	rs12372998	C	T	t	Sox3.mouse_HMG_3	8	1	-	2.8799861226515153	2.2568694754737004	TATAAATGGCAGTGAAA
chr15	39079859	39079860	chr15:39079860:C:T	rs12372999	C	T	t	Sox3.mouse_HMG_3	7	1	-	2.8799861226515153	-3.6735625920062116	TATAAATGGCAGTGAAA
chr15	39097217	39097218	chr15:39097218:T:C	rs16968141	T	C	t	Sox3.mouse_HMG_3	11	1	-	1.4537818317288393	6.103956557534977	ACTGAATTTCAATCAGC
chr15	39127232	39127233	chr15:39127233:G:A	rs12594760	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr15	39140018	39140019	chr15:39140019:A:C	chr15:39140019:A:C	A	C	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr15	39195374	39195375	chr15:39195375:C:A	rs2623476	C	A	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr15	39204008	39204009	chr15:39204009:G:A	rs73383220	G	A	g	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr15	39238306	39238307	chr15:39238307:G:A	rs276854	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr15	39239351	39239352	chr15:39239352:G:C	rs117637167	G	C	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr15	39247599	39247600	chr15:39247600:T:C	rs969564	T	C	T	Sox3.mouse_HMG_3	16	1	+	5.7099637663077285	4.84303702683545	TCTGAATTTTATTCCTT
chr15	39247836	39247837	chr15:39247837:G:A	rs1309258645	G	A	G	Sox3.mouse_HMG_3	2	1	+	3.084149694717089	4.105800942249069	GCGGAATGTCAGTCAGG
chr15	39261424	39261425	chr15:39261425:T:C	rs199928045	T	C	T	Sox3.mouse_HMG_3	2	1	+	2.6447596999312895	-3.9611194182996403	AATGAATTTGATTTAAA
chr15	39327459	39327460	chr15:39327460:G:C	rs8033007	G	C	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr15	39333416	39333417	chr15:39333417:T:C	rs11070185	T	C	C	Sox3.mouse_HMG_3	15	1	+	1.5409663917140295	-3.173427020001039	ATTCAGTGTTATTCATG
chr15	39362351	39362352	chr15:39362352:G:A	rs12050799	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr15	39579888	39579889	chr15:39579889:T:A	rs547745491	T	A	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr15	39663861	39663862	chr15:39663862:G:A	rs58332880	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr15	39693157	39693158	chr15:39693158:C:T	rs74665524	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr15	39748321	39748322	chr15:39748322:T:C	rs17643920	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr15	39771602	39771603	chr15:39771603:A:T	rs75968722	A	T	A	Sox3.mouse_HMG_3	15	1	-	1.3212040711480717	-0.9426053930887494	CATGACTGATAGTAATT
chr15	39771938	39771939	chr15:39771939:C:G	rs1166722	C	G	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr15	39925557	39925558	chr15:39925558:T:C	rs58498873	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr15	40101060	40101061	chr15:40101061:G:A	rs500804	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr15	40321390	40321391	chr15:40321391:A:G	rs74341421	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr15	40383180	40383181	chr15:40383181:G:C	rs147559298	G	C	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr15	40485495	40485496	chr15:40485496:G:A	rs8040302	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr15	40972140	40972141	chr15:40972141:C:G	rs3986311	C	G	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr15	41218560	41218561	chr15:41218561:A:G	rs16971651	A	G	G	Sox3.mouse_HMG_3	14	1	+	4.128853039058092	-2.2530931273688193	AATGAATTCCGTGCATA
chr15	41553890	41553891	chr15:41553891:G:C	rs8028439	G	C	G	Sox3.mouse_HMG_3	13	1	-	1.6857748446726046	-4.9214857657894155	TTTGACTTTCAGTCACA
chr15	41612108	41612109	chr15:41612109:C:T	rs28682886	C	T	C	Sox3.mouse_HMG_3	3	1	-	2.723019568338323	-3.058545319190908	AATGATTTTTATTCTTT
chr15	41734311	41734312	chr15:41734312:C:G	rs10518728	C	G	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr15	42010321	42010322	chr15:42010322:C:T	rs9919954	C	T	C	Sox3.mouse_HMG_3	0	1	-	1.0816502192006783	0.2563663180543343	GGAGAATTTTAGGCATG
chr15	42033318	42033319	chr15:42033319:A:G	rs2724945	A	G	G	Sox3.mouse_HMG_3	5	1	+	4.133251034372361	-2.3555838876985025	AATGAATGCAAGTCTTG
chr15	42035264	42035265	chr15:42035265:A:T	rs77301384	A	T	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr15	42158578	42158579	chr15:42158579:G:A	rs142517525	G	A	G	Sox3.mouse_HMG_3	3	1	+	2.5609151888515598	-3.2206496986776703	CAAGTATTATATTCATT
chr15	42273389	42273390	chr15:42273390:C:A	rs2277533	C	A	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr15	42696803	42696804	chr15:42696804:A:G	rs78373841	A	G	a	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr15	42783003	42783004	chr15:42783004:A:G	rs9920935	A	G	G	Sox3.mouse_HMG_3	2	1	-	3.5188048205665057	-3.087074297664425	GATGAATAGTAATCAGG
chr15	43855066	43855067	chr15:43855067:C:T	rs495880	C	T	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr15	43952185	43952186	chr15:43952186:C:T	rs114727768	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr15	44075865	44075866	chr15:44075866:G:A	rs56108733	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr15	45015373	45015374	chr15:45015374:T:G	rs79410909	T	G	t	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr15	45327036	45327037	chr15:45327037:T:C	rs560144049	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr15	45476562	45476563	chr15:45476563:T:C	rs78321181	T	C	t	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr15	45574126	45574127	chr15:45574127:A:T	rs73420409	A	T	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr15	46076016	46076017	chr15:46076017:T:C	rs10519042	T	C	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr15	46076047	46076048	chr15:46076048:T:G	rs11070488	T	G	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr15	46095127	46095128	chr15:46095128:T:C	rs28611449	T	C	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr15	46127045	46127046	chr15:46127046:G:A	rs8036009	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr15	46343875	46343876	chr15:46343876:G:C	rs543365089	G	C	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr15	46525600	46525601	chr15:46525601:C:A	rs77690652	C	A	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr15	46575891	46575892	chr15:46575892:G:T	rs2176856	G	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr15	46607132	46607133	chr15:46607133:G:A	rs8041872	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr15	46607175	46607176	chr15:46607176:G:T	rs8041900	G	T	t	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr15	47140301	47140302	chr15:47140302:C:T	rs28417512	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr15	47214068	47214069	chr15:47214069:T:A	rs12916456	T	A	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr15	47258794	47258795	chr15:47258795:A:G	rs77159975	A	G	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr15	47265748	47265749	chr15:47265749:T:C	rs993295	T	C	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr15	47340257	47340258	chr15:47340258:G:A	rs499580	G	A	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr15	47613942	47613943	chr15:47613943:A:G	rs10851457	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr15	47624674	47624675	chr15:47624675:G:C	rs1529883	G	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr15	47839242	47839243	chr15:47839243:A:G	rs8035818	A	G	g	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr15	48232324	48232325	chr15:48232325:G:C	rs1843144	G	C	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr15	48330195	48330196	chr15:48330196:A:C	rs74014513	A	C	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr15	48462970	48462971	chr15:48462971:T:C	rs9806595	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr15	48490365	48490366	chr15:48490366:T:C	rs11635140	T	C	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr15	48657512	48657513	chr15:48657513:C:T	rs1857910	C	T	T	Sox3.mouse_HMG_3	9	1	+	4.0678568565478335	4.075493533539579	TTGGAATGACAGTCAGA
chr15	48805818	48805819	chr15:48805819:C:A	rs1426200	C	A	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr15	48945360	48945361	chr15:48945361:C:T	rs4774532	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr15	49045832	49045833	chr15:49045833:G:C	rs567296429	G	C	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr15	49473181	49473182	chr15:49473182:G:A	rs150555428	G	A	G	Sox3.mouse_HMG_3	7	1	+	3.1751378361498723	-3.3784108785078555	TATGAATGCCAGGAATT
chr15	49826927	49826928	chr15:49826928:C:T	rs4393520	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr15	49964476	49964477	chr15:49964477:T:C	rs2413989	T	C	T	Sox3.mouse_HMG_3	6	1	+	2.228799372997086	-4.379151268543712	GATAAATTAAAGTCAAA
chr15	49970300	49970301	chr15:49970301:G:A	rs4349087	G	A	G	Sox3.mouse_HMG_3	8	1	+	2.763123631016607	2.140006983838794	AATAAAGGGTATTCAGA
chr15	49984869	49984870	chr15:49984870:T:A	rs16963143	T	A	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr15	50065545	50065546	chr15:50065546:G:T	rs7172615	G	T	G	Sox3.mouse_HMG_3	3	1	+	4.403616516036243	-2.5028779684784714	TATGGATTATTTTCATG
chr15	50148495	50148496	chr15:50148496:G:A	rs60387657	G	A	G	Sox3.mouse_HMG_3	15	1	+	2.702970503845874	3.5617518507022945	CATGAATGGGATTAAGG
chr15	50199376	50199377	chr15:50199377:A:G	rs6493415	A	G	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr15	50770543	50770544	chr15:50770544:A:G	rs8038437	A	G	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr15	50778961	50778962	chr15:50778962:A:G	rs1003140766	A	G	a	Sox3.mouse_HMG_3	6	1	-	0.38054648198929164	-6.227404159551505	TATGACTTGCGGTCAGG
chr15	51044904	51044905	chr15:51044905:C:T	rs12911715	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr15	51076039	51076040	chr15:51076040:T:C	rs17522120	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr15	51076888	51076889	chr15:51076889:T:C	rs34013374	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr15	51079520	51079521	chr15:51079521:C:A	rs79751744	C	A	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr15	51253662	51253663	chr15:51253663:G:A	rs12908960	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr15	51257401	51257402	chr15:51257402:G:A	rs1008805	G	A	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr15	51721469	51721470	chr15:51721470:T:C	rs75943076	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr15	51835032	51835033	chr15:51835033:T:C	rs6493526	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr15	51843046	51843047	chr15:51843047:C:T	rs191231518	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr15	51982388	51982389	chr15:51982389:A:G	chr15:51982389:A:G	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr15	52013266	52013267	chr15:52013267:G:A	rs7177328	G	A	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr15	52151024	52151025	chr15:52151025:G:A	rs3794546	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr15	52151035	52151036	chr15:52151036:G:A	rs3794547	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr15	52285608	52285609	chr15:52285609:G:C	rs28459428	G	C	-	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr15	52287141	52287142	chr15:52287142:G:C	chr15:52287142:G:C	G	C	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr15	52289696	52289697	chr15:52289697:C:G	rs79978076	C	G	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr15	52315206	52315207	chr15:52315207:T:C	rs28618215	T	C	T	Sox3.mouse_HMG_3	6	1	+	4.3568862996278845	-2.2510643419129126	GTTGAATGGCAGCCAAC
chr15	52494121	52494122	chr15:52494122:G:C	rs1612233	G	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr15	52499644	52499645	chr15:52499645:T:G	rs11858875	T	G	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr15	52656428	52656429	chr15:52656429:C:G	rs17651941	C	G	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr15	52733494	52733495	chr15:52733495:C:A	rs1648354	C	A	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr15	52855416	52855417	chr15:52855417:G:A	rs62023513	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr15	53374307	53374308	chr15:53374308:T:C	rs4776139	T	C	C	Sox3.mouse_HMG_3	2	1	+	2.116577802888706	-4.489301315342225	CATAAATGCCAATCAGG
chr15	53590031	53590032	chr15:53590032:A:T	chr15:53590032:A:T	A	T	A	Sox3.mouse_HMG_3	12	1	-	2.505002490083168	-3.6078083696440633	AAAGCATTGTAGTCATT
chr15	53911708	53911709	chr15:53911709:G:C	rs11857259	G	C	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr15	53925821	53925822	chr15:53925822:G:T	rs11853921	G	T	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr15	54012696	54012697	chr15:54012697:T:C	rs12911018	T	C	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr15	54688005	54688006	chr15:54688006:C:T	rs12916090	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr15	54879323	54879324	chr15:54879324:A:G	rs11071149	A	G	A	Sox3.mouse_HMG_3	11	1	-	1.2560337153527041	-4.828577110749241	TCTGAATTGCATAGATG
chr15	55170345	55170346	chr15:55170346:T:C	rs7172575	T	C	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr15	55170364	55170365	chr15:55170365:A:C	rs73405895	A	C	C	Sox3.mouse_HMG_3	16	1	-	3.204646435087123	4.391575951292145	TAAGAATTGTAGTGATT
chr15	55279738	55279739	chr15:55279739:G:A	rs73413677	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr15	55387055	55387056	chr15:55387056:G:A	rs11857139	G	A	G	Sox3.mouse_HMG_3	1	1	+	2.3584662165778227	5.4585961530151135	TGAGAATGGCAGTAATG
chr15	55498084	55498085	chr15:55498085:T:C	rs61675921	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr15	55538675	55538676	chr15:55538676:C:T	rs11637694	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr15	55590965	55590966	chr15:55590966:G:A	rs75931561	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr15	55630939	55630940	chr15:55630940:T:C	rs78529535	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr15	55737598	55737599	chr15:55737599:G:A	rs565353070	G	A	G	Sox3.mouse_HMG_3	7	1	+	2.3873459422150485	-4.166202772442681	AATGAATGAGGGTCATC
chr15	55799542	55799543	chr15:55799543:T:C	rs12148407	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr15	55882628	55882629	chr15:55882629:T:C	rs7179116	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr15	56049286	56049287	chr15:56049287:T:C	rs78791728	T	C	T	Sox3.mouse_HMG_3	14	1	+	5.150430197309774	5.150430197309774	AAAGAATGGCATTCTTT
chr15	56428964	56428965	chr15:56428965:T:A	rs80310410	T	A	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr15	56539671	56539672	chr15:56539672:C:A	rs938621	C	A	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr15	56539681	56539682	chr15:56539682:C:T	rs938622	C	T	C	Sox3.mouse_HMG_3	16	1	-	0.6141415602777582	0.5782011038252326	GGAGAATGACACTCAGG
chr15	56653249	56653250	chr15:56653250:A:G	rs4774885	A	G	A	Sox3.mouse_HMG_3	9	1	-	5.382125906723917	5.374489229732171	GTTGAAGTTTAGTCATT
chr15	56805055	56805056	chr15:56805056:G:C	rs138759002	G	C	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr15	56821724	56821725	chr15:56821725:G:A	rs1647392	G	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr15	56821754	56821755	chr15:56821755:T:A	rs183481788	T	A	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr15	56993056	56993057	chr15:56993057:A:G	rs12899187	A	G	A	Sox3.mouse_HMG_3	6	1	-	4.520753613685821	-2.087197027854976	TCTGAATGCTAGTCTTC
chr15	57021507	57021508	chr15:57021508:A:G	rs2957576	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr15	57045281	57045282	chr15:57045282:G:A	rs2920265	G	A	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr15	57146641	57146642	chr15:57146642:G:C	chr15:57146642:G:C	G	C	G	Sox3.mouse_HMG_3	1	1	+	0.8780381237831877	-0.1986914536354153	TGTGAATGTCTTTCGTT
chr15	57386109	57386110	chr15:57386110:T:C	rs8026675	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr15	57392626	57392627	chr15:57392627:G:T	rs10518915	G	T	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr15	57506778	57506779	chr15:57506779:G:A	rs62000288	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr15	57560747	57560748	chr15:57560748:C:A	rs2635388	C	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr15	57598659	57598660	chr15:57598660:A:G	rs58919063	A	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr15	57654641	57654642	chr15:57654642:A:G	rs151078322	A	G	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr15	57679829	57679830	chr15:57679830:C:T	rs77008298	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr15	58258929	58258930	chr15:58258930:T:C	rs71478655	T	C	T	Sox3.mouse_HMG_3	2	1	+	0.6262486255047746	-5.979630492726156	TCTGGATGGCAGTAATG
chr15	58260317	58260318	chr15:58260318:A:G	rs72625727	A	G	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr15	58260537	58260538	chr15:58260538:G:A	rs35022432	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr15	58360612	58360613	chr15:58360613:C:A	rs146093500	C	A	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr15	58378978	58378979	chr15:58378979:C:A	rs10152355	C	A	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr15	58432409	58432410	chr15:58432410:G:A	rs415208	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr15	58509215	58509216	chr15:58509216:G:T	rs4775061	G	T	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr15	58509226	58509227	chr15:58509227:G:C	rs4775062	G	C	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr15	58545810	58545811	chr15:58545811:A:G	rs6083	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr15	58545838	58545839	chr15:58545839:C:G	rs6084	C	G	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr15	58548967	58548968	chr15:58548968:C:G	rs56176178	C	G	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr15	58632850	58632851	chr15:58632851:G:C	rs12907237	G	C	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr15	59172410	59172411	chr15:59172411:T:C	rs8040100	T	C	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr15	59290839	59290840	chr15:59290840:C:A	rs147340293	C	A	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr15	59297987	59297988	chr15:59297988:G:A	rs2899648	G	A	G	Sox3.mouse_HMG_3	13	1	-	3.831356518860926	-2.7759040916010944	CTAGAATTCTAGTCAAA
chr15	59299661	59299662	chr15:59299662:G:T	rs66484811	G	T	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr15	59615084	59615085	chr15:59615085:G:A	rs143082338	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.2639250317939494	-4.517639855735282	GCTGGAGGTTATTCATG
chr15	59653140	59653141	chr15:59653141:G:C	rs6494131	G	C	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr15	59656261	59656262	chr15:59656262:T:A	rs7180408	T	A	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr15	59691428	59691429	chr15:59691429:C:T	rs1871504	C	T	T	Sox3.mouse_HMG_3	11	1	-	1.8741151392783562	-2.776059586527783	TATGATTTCCAGTGATT
chr15	59691456	59691457	chr15:59691457:C:T	rs3759832	C	T	t	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr15	59699964	59699965	chr15:59699965:A:C	rs6494139	A	C	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr15	59741674	59741675	chr15:59741675:C:T	rs11629911	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr15	60091358	60091359	chr15:60091359:C:A	rs183646877	C	A	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr15	60091377	60091378	chr15:60091378:C:A	rs77033272	C	A	C	Sox3.mouse_HMG_3	13	1	+	4.226129148351913	-2.1565075256254627	CCTGAATTCCAGTCCTA
chr15	60255334	60255335	chr15:60255335:G:A	rs931971	G	A	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr15	60255790	60255791	chr15:60255791:A:C	rs1858189	A	C	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr15	60470440	60470441	chr15:60470441:G:A	rs28550783	G	A	g	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr15	60781403	60781404	chr15:60781404:C:T	rs77618226	C	T	C	Sox3.mouse_HMG_3	16	1	-	1.8652648247268588	1.8293243682743332	AATGAATGACTCTCAGG
chr15	60863474	60863475	chr15:60863475:T:C	rs11071563	T	C	T	Sox3.mouse_HMG_3	14	1	-	1.3140597619359569	-5.067886404490954	TTTGAGTGCTGTTCATT
chr15	60902034	60902035	chr15:60902035:A:G	rs2899663	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr15	60977259	60977260	chr15:60977260:C:T	rs4638514	C	T	T	Sox3.mouse_HMG_3	3	1	-	2.098088116018275	-3.6834767715109553	ACTGAATTGCATTTACG
chr15	60994754	60994755	chr15:60994755:A:T	rs16943452	A	T	T	Sox3.mouse_HMG_3	6	1	-	1.0326294985428972	-5.718421986638573	GTTGAGTTGTCTTCATT
chr15	60999939	60999940	chr15:60999940:T:G	rs7167514	T	G	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr15	60999952	60999953	chr15:60999953:T:C	rs68016289	T	C	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr15	61032724	61032725	chr15:61032725:G:C	rs796712	G	C	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr15	61480351	61480352	chr15:61480352:T:G	rs56810547	T	G	T	Sox3.mouse_HMG_3	5	1	-	1.1478691985870895	-5.459571465891621	CAACAATGCTAGTCATC
chr15	61856845	61856846	chr15:61856846:T:C	rs1052306	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr15	61950544	61950545	chr15:61950545:G:A	rs72749709	G	A	G	Sox3.mouse_HMG_3	3	1	+	3.2257218053929577	-2.555843082136274	AAAGAAAGCCATTCAAA
chr15	62109843	62109844	chr15:62109844:T:A	rs11637605	T	A	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr15	62533997	62533998	chr15:62533998:G:A	rs17738626	G	A	g	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr15	62549487	62549488	chr15:62549488:C:G	rs1311857748	C	G	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr15	62552378	62552379	chr15:62552379:C:T	rs4775514	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr15	62565714	62565715	chr15:62565715:G:A	rs7162902	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr15	62897832	62897833	chr15:62897833:G:A	rs184709679	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr15	62897835	62897836	chr15:62897836:T:G	rs11634431	T	G	g	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr15	62932460	62932461	chr15:62932461:T:C	chr15:62932461:T:C	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr15	62932460	62932461	chr15:62932461:T:G	rs6494372	T	G	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr15	62932508	62932509	chr15:62932509:T:C	rs28540504	T	C	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr15	62955131	62955132	chr15:62955132:C:A	rs28707628	C	A	a	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr15	63046557	63046558	chr15:63046558:T:C	rs8026502	T	C	T	Sox3.mouse_HMG_3	5	1	+	3.1096558919220607	3.1096558919220607	GAAGATTGTCATTCAGG
chr15	63065652	63065653	chr15:63065653:T:G	rs28583444	T	G	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr15	63114585	63114586	chr15:63114586:T:C	rs6494391	T	C	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr15	63203085	63203086	chr15:63203086:T:G	rs1550721	T	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr15	63223746	63223747	chr15:63223747:A:G	rs11632192	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr15	63232612	63232613	chr15:63232613:G:A	rs146122405	G	A	G	Sox3.mouse_HMG_3	9	1	-	3.051791831648457	3.0594285086402047	ATTAAATGGCATTTATA
chr15	63251955	63251956	chr15:63251956:A:G	rs111247008	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr15	63284558	63284559	chr15:63284559:T:A	rs7178404	T	A	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr15	63332326	63332327	chr15:63332327:C:T	rs55871911	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr15	63717247	63717248	chr15:63717248:G:A	rs62012363	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr15	63945771	63945772	chr15:63945772:G:A	rs142746902	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr15	63983943	63983944	chr15:63983944:G:C	rs8038345	G	C	g	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr15	64217444	64217445	chr15:64217445:A:G	rs77843340	A	G	A	Sox3.mouse_HMG_3	4	1	+	3.497446686361203	-2.8853700416328634	AATGAATTTCCTTTATA
chr15	64542922	64542923	chr15:64542923:A:G	rs2733386	A	G	g	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr15	64624198	64624199	chr15:64624199:G:A	rs970523085	G	A	g	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr15	64710854	64710855	chr15:64710855:A:G	rs7402386	A	G	A	Sox3.mouse_HMG_3	9	1	-	2.4625653729876804	2.4549286959959344	GATGGATGATAGACAAG
chr15	65061169	65061170	chr15:65061170:A:T	rs56813157	A	T	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr15	65326181	65326182	chr15:65326182:C:T	rs149738821	C	T	C	Sox3.mouse_HMG_3	0	1	-	0.14686778629923847	-0.6784161148471053	GCTTAATGGCAGTTATG
chr15	65326193	65326194	chr15:65326194:C:A	rs7162046	C	A	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr15	65326194	65326195	chr15:65326195:G:A	rs145629976	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr15	65584117	65584118	chr15:65584118:G:A	rs148312314	G	A	g	Sox3.mouse_HMG_3	13	1	-	0.9336513921985714	-5.673609218263448	CAGGCATGGTATTCAGG
chr15	65596020	65596021	chr15:65596021:G:T	rs7165102	G	T	T	Sox3.mouse_HMG_3	3	1	-	0.9784742449633397	1.9464000931391578	AATCAATGACAGTTATC
chr15	65792997	65792998	chr15:65792998:A:T	rs7163969	A	T	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr15	65981009	65981010	chr15:65981010:G:T	rs114146762	G	T	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr15	65981013	65981014	chr15:65981014:A:G	rs137998134	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr15	66025079	66025080	chr15:66025080:C:T	rs28639591	C	T	C	Sox3.mouse_HMG_3	9	1	+	0.6212717641890564	0.6289084411808041	GATGAATTCCGGCCAGG
chr15	66142951	66142952	chr15:66142952:G:A	rs8023772	G	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr15	66401529	66401530	chr15:66401530:G:C	rs35945138	G	C	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr15	66405796	66405797	chr15:66405797:T:C	rs202150689	T	C	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr15	66405814	66405815	chr15:66405815:A:G	rs986582032	A	G	A	Sox3.mouse_HMG_3	10	1	+	3.986952398622285	-2.6209982429185112	AAGGAATTCCATTCTTA
chr15	66405833	66405834	chr15:66405834:G:A	rs891848	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr15	66503246	66503247	chr15:66503247:T:G	rs36076768	T	G	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr15	66629624	66629625	chr15:66629625:G:C	rs4776806	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr15	66721917	66721918	chr15:66721918:G:C	rs536640883	G	C	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr15	66751334	66751335	chr15:66751335:A:G	rs572696436	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr15	66754457	66754458	chr15:66754458:G:A	rs12906898	G	A	g	Sox3.mouse_HMG_3	11	1	+	2.4929081207879067	-2.1572666050182305	TGTGAATTACAGCCAGT
chr15	66814970	66814971	chr15:66814971:T:C	rs7170990	T	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr15	66938111	66938112	chr15:66938112:A:C	rs16950373	A	C	C	Sox3.mouse_HMG_3	1	1	+	4.017205581633292	-0.15965393222260404	TATTCATTCCATTCATA
chr15	66938141	66938142	chr15:66938142:T:G	rs16950375	T	G	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr15	67026203	67026204	chr15:67026204:T:C	rs35841291	T	C	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr15	67089639	67089640	chr15:67089640:G:A	rs138566155	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr15	67089674	67089675	chr15:67089675:G:A	rs532515532	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr15	67089676	67089677	chr15:67089677:T:C	rs142788699	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr15	67101780	67101781	chr15:67101781:T:C	rs6494630	T	C	C	Sox3.mouse_HMG_3	6	1	+	2.29818095811563	-4.309769683425166	TGTGAATGATATTTCTG
chr15	67203027	67203028	chr15:67203028:A:G	rs78142207	A	G	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr15	67250010	67250011	chr15:67250011:T:A	rs4776909	T	A	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr15	67463494	67463495	chr15:67463495:A:G	rs12595293	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr15	67510232	67510233	chr15:67510233:G:A	rs3098770	G	A	A	Sox3.mouse_HMG_3	9	1	-	2.1604870804566225	2.1681237574483685	TACGAATTTCATTCTAA
chr15	67808284	67808285	chr15:67808285:C:T	rs1871307	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr15	67824817	67824818	chr15:67824818:G:A	rs146830880	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr15	67843783	67843784	chr15:67843784:A:G	rs79343460	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr15	68028830	68028831	chr15:68028831:G:C	rs35504446	G	C	g	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr15	68273078	68273079	chr15:68273079:A:G	rs114560020	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr15	68280030	68280031	chr15:68280031:T:C	rs74019868	T	C	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr15	68319738	68319739	chr15:68319739:C:T	rs58296003	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr15	68409311	68409312	chr15:68409312:A:G	rs17320635	A	G	A	Sox3.mouse_HMG_3	14	1	+	1.213880679307629	-5.168065487119281	GTTATATGCTATTCAAG
chr15	68442387	68442388	chr15:68442388:A:C	rs11638741	A	C	C	Sox3.mouse_HMG_3	12	1	-	2.732922558426301	-3.648152287895609	AACAAATGTCAGTCATT
chr15	68489242	68489243	chr15:68489243:A:T	rs7169418	A	T	A	Sox3.mouse_HMG_3	2	1	-	2.5274751881180397	-3.1998535262215837	GATGAATGTGATTCCAC
chr15	68778646	68778647	chr15:68778647:C:T	rs58983340	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr15	68987790	68987791	chr15:68987791:G:A	rs16952720	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr15	69019727	69019728	chr15:69019728:T:C	rs311910	T	C	C	Sox3.mouse_HMG_3	2	1	+	1.3025543766731482	-5.303324741557782	TTTGAATGGCAATCTAG
chr15	69289202	69289203	chr15:69289203:G:C	rs140897318	G	C	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr15	69466062	69466063	chr15:69466063:G:A	rs73428059	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr15	69475780	69475781	chr15:69475781:C:T	rs74020692	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr15	69568726	69568727	chr15:69568727:A:T	rs4776457	A	T	A	Sox3.mouse_HMG_3	15	1	-	1.4084509886661323	-0.8553584755706886	TAGGAATTACTGTCATT
chr15	69719479	69719480	chr15:69719480:T:A	rs35514484	T	A	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr15	69750548	69750549	chr15:69750549:A:T	rs7182742	A	T	A	Sox3.mouse_HMG_3	9	1	+	1.0168264504357656	7.07868175193583	GTTGAATTCATTTCATT
chr15	69799957	69799958	chr15:69799958:C:A	rs305053	C	A	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr15	69810331	69810332	chr15:69810332:A:G	rs77285359	A	G	A	Sox3.mouse_HMG_3	15	1	+	2.705098902831035	1.8463175559746143	ATTTAATTTTATTCAAC
chr15	69810351	69810352	chr15:69810352:C:T	rs16953777	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr15	69930321	69930322	chr15:69930322:G:C	rs4776486	G	C	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr15	70019392	70019393	chr15:70019393:A:G	rs4777221	A	G	G	Sox3.mouse_HMG_3	1	1	+	1.8403612879996547	-1.2597686484376374	GATTAAGGATATTCAGA
chr15	70036575	70036576	chr15:70036576:G:A	rs117381768	G	A	G	Sox3.mouse_HMG_3	9	1	-	2.9775694017612095	2.9852060787529555	AAAGAATCGCAGTCATC
chr15	70154443	70154444	chr15:70154444:T:G	rs76226818	T	G	T	Sox3.mouse_HMG_3	10	1	-	3.426675675730563	-3.324375809450907	GAGGAATGCTATTTATC
chr15	70181677	70181678	chr15:70181678:T:G	rs7181003	T	G	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr15	70291544	70291545	chr15:70291545:T:C	rs73433316	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr15	70291561	70291562	chr15:70291562:T:C	rs73433318	T	C	t	Sox3.mouse_HMG_3	6	1	+	2.50510010034348	-4.102850541197317	TATGAATGGCAGGAAAA
chr15	70305151	70305152	chr15:70305152:C:A	rs72751588	C	A	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr15	70319290	70319291	chr15:70319291:C:T	rs74021724	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr15	70354646	70354647	chr15:70354647:C:T	rs746800731	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr15	70427602	70427603	chr15:70427603:T:G	rs74021788	T	G	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr15	70465009	70465010	chr15:70465010:G:A	rs12915110	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr15	70599107	70599108	chr15:70599108:C:G	rs12101475	C	G	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr15	70795672	70795673	chr15:70795673:C:T	rs77947974	C	T	T	Sox3.mouse_HMG_3	11	1	-	2.6135440336976066	-2.036630692108531	ATTGAAGTTCAGTCAGG
chr15	70812341	70812342	chr15:70812342:A:G	rs16954893	A	G	G	Sox3.mouse_HMG_3	2	1	+	2.5938942984583147	1.572243050926333	CAATAATTGCAGTCATA
chr15	70812758	70812759	chr15:70812759:C:G	rs9806539	C	G	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr15	70868024	70868025	chr15:70868025:T:C	rs4777321	T	C	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr15	71647331	71647332	chr15:71647332:A:T	rs2062651	A	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr15	71718358	71718359	chr15:71718359:G:A	rs8033309	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr15	71780663	71780664	chr15:71780664:C:T	rs2291275	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr15	71780699	71780700	chr15:71780700:G:A	rs34435520	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr15	71997993	71997994	chr15:71997994:T:C	rs114707324	T	C	t	Sox3.mouse_HMG_3	4	1	-	2.985139313254429	-3.397677414739639	AATGATTTCTATTCCTT
chr15	72227423	72227424	chr15:72227424:G:A	rs187846679	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr15	72411246	72411247	chr15:72411247:A:G	rs17841142	A	G	G	Sox3.mouse_HMG_3	2	1	+	4.435606356357257	3.4139551088252764	TAAGAATTCCAGACATG
chr15	72670859	72670860	chr15:72670860:A:C	rs184544416	A	C	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr15	72857994	72857995	chr15:72857995:T:G	rs12442394	T	G	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr15	72888990	72888991	chr15:72888991:T:C	rs11638999	T	C	C	Sox3.mouse_HMG_3	0	1	+	2.220310601264308	0.7654399559274435	TGTGGATGGCATACATT
chr15	73125484	73125485	chr15:73125485:A:G	rs8026579	A	G	G	Sox3.mouse_HMG_3	14	1	-	3.1006411958660847	3.1006411958660847	AATTAATGACAGTCTTG
chr15	73331595	73331596	chr15:73331596:G:A	rs569532	G	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr15	73400689	73400690	chr15:73400690:T:C	rs8039510	T	C	C	Sox3.mouse_HMG_3	12	1	+	1.8351128759500137	-4.357740691450753	TTTCAAGGTTATTCATG
chr15	73663080	73663081	chr15:73663081:A:T	rs533135057	A	T	A	Sox3.mouse_HMG_3	5	1	+	2.671312952844098	-3.9361277116346125	AATGAATTGAATTGAAG
chr15	73720067	73720068	chr15:73720068:T:C	rs1038093	T	C	t	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr15	73785455	73785456	chr15:73785456:C:T	rs2009335	C	T	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr15	74216497	74216498	chr15:74216498:C:A	rs72747617	C	A	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr15	74300520	74300521	chr15:74300521:G:A	rs12904134	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr15	74347767	74347768	chr15:74347768:C:T	rs1484215	C	T	C	Sox3.mouse_HMG_3	11	1	-	0.10314466642276032	-4.547030059383378	GGTGAATCCCCGTCATT
chr15	74464298	74464299	chr15:74464299:T:A	rs145740619	T	A	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr15	74504719	74504720	chr15:74504720:G:A	rs6495109	G	A	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr15	75097955	75097956	chr15:75097956:T:C	rs71401675	T	C	T	Sox3.mouse_HMG_3	1	1	-	10.261588433912868	7.161458497475572	AATGAATGATATTAATT
chr15	75148279	75148280	chr15:75148280:A:G	rs12917185	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr15	75441812	75441813	chr15:75441813:T:A	rs80319944	T	A	T	Sox3.mouse_HMG_3	2	1	+	2.717025199510349	-3.010303514829274	AATAAATGTCAATCAGA
chr15	75462143	75462144	chr15:75462144:A:C	rs115522398	A	C	A	Sox3.mouse_HMG_3	2	1	-	0.8337444643671135	-5.915235497504493	AGTGAGTAGCAGTCATA
chr15	75732515	75732516	chr15:75732516:T:C	rs8028002	T	C	t	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr15	75736027	75736028	chr15:75736028:A:C	rs17424999	A	C	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr15	75902144	75902145	chr15:75902145:G:A	rs335683	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr15	76010830	76010831	chr15:76010831:T:C	rs16967774	T	C	t	Sox3.mouse_HMG_3	1	1	+	3.0352607778404534	1.8284780721736549	ATTGGATTATAGTCAGA
chr15	76168503	76168504	chr15:76168504:T:C	rs58863068	T	C	T	Sox3.mouse_HMG_3	15	1	+	3.432336489964452	-1.2820569217506161	CGTGAATTAAAGTCATC
chr15	76368482	76368483	chr15:76368483:G:A	rs75438376	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr15	76728160	76728161	chr15:76728161:T:C	rs67570291	T	C	T	Sox3.mouse_HMG_3	15	1	-	1.8395707181478356	0.980789371291415	GATGTATGACCTTCAAT
chr15	76741833	76741834	chr15:76741834:G:A	rs280025	G	A	G	Sox3.mouse_HMG_3	0	1	+	1.9549181559050188	1.129634254758674	GATGAGTTCCACTCAAT
chr15	76741865	76741866	chr15:76741866:T:C	rs62028726	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr15	77035366	77035367	chr15:77035367:T:C	rs1051322112	T	C	T	Sox3.mouse_HMG_3	11	1	+	4.950591894183245	-1.1340189319187004	CATAAATGACATCCATG
chr15	77173866	77173867	chr15:77173867:T:C	rs144535834	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr15	77192613	77192614	chr15:77192614:A:G	rs12912053	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr15	77297192	77297193	chr15:77297193:T:C	rs7182221	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr15	77312051	77312052	chr15:77312052:T:A	rs1045043454	T	A	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr15	77841204	77841205	chr15:77841205:C:T	rs115963774	C	T	C	Sox3.mouse_HMG_3	0	1	-	0.43446856253585486	-0.3908153386104891	GGGGAATCCTATTCAAA
chr15	77841205	77841206	chr15:77841206:G:A	rs150685963	G	A	g	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr15	78208455	78208456	chr15:78208456:C:T	rs60968764	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr15	78239190	78239191	chr15:78239191:T:C	rs1969341	T	C	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr15	78254560	78254561	chr15:78254561:G:A	rs7183158	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr15	78298112	78298113	chr15:78298113:A:T	rs8026257	A	T	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr15	78317551	78317552	chr15:78317552:G:A	rs955819392	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr15	78349083	78349084	chr15:78349084:T:C	rs79630853	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr15	78362002	78362003	chr15:78362003:C:G	rs72736777	C	G	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr15	78390953	78390954	chr15:78390954:G:A	rs778116075	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr15	78438833	78438834	chr15:78438834:G:A	rs1450677216	G	A	G	Sox3.mouse_HMG_3	5	1	+	1.5085026224963676	7.997337544567231	AATGAGGGGCAGTCAAG
chr15	78438852	78438853	chr15:78438853:A:T	rs62010408	A	T	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr15	78677916	78677917	chr15:78677917:T:C	rs16970006	T	C	T	Sox3.mouse_HMG_3	2	1	+	7.106435600339944	0.5005564821090156	TATGTATTTCAGTCAAA
chr15	78738156	78738157	chr15:78738157:C:T	rs11852909	C	T	-	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr15	78738183	78738184	chr15:78738184:T:G	rs11856441	T	G	-	Sox3.mouse_HMG_3	4	1	-	4.373613506887993	-2.3769280012313927	GGTGAATGGAAGTCAGT
chr15	78738200	78738201	chr15:78738201:G:A	rs142705205	G	A	-	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr15	78893555	78893556	chr15:78893556:C:A	rs1435163	C	A	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr15	78926485	78926486	chr15:78926486:G:A	rs76893083	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr15	78937649	78937650	chr15:78937650:G:C	rs145508218	G	C	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr15	79052034	79052035	chr15:79052035:C:T	rs77773016	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr15	79052038	79052039	chr15:79052039:G:A	rs187128630	G	A	G	Sox3.mouse_HMG_3	1	1	+	5.347557802749304	8.447687739186598	CGTGAATTACAGCCATG
chr15	79118367	79118368	chr15:79118368:T:C	rs2102999	T	C	C	Sox3.mouse_HMG_3	6	1	+	-0.14061222472413482	-6.748562866264933	GATGAATGGACTTGATG
chr15	79169173	79169174	chr15:79169174:A:G	rs11072826	A	G	A	Sox3.mouse_HMG_3	15	1	-	2.3014218270309357	-2.4129715846841324	ATAGCATGTTATTCATG
chr15	79340230	79340231	chr15:79340231:T:C	rs186806710	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr15	79381094	79381095	chr15:79381095:T:C	rs2174821	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr15	79406086	79406087	chr15:79406087:G:A	rs34338705	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr15	80118902	80118903	chr15:80118903:G:A	rs62006309	G	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr15	80118924	80118925	chr15:80118925:T:C	rs34036416	T	C	C	Sox3.mouse_HMG_3	12	1	+	2.3347240618960603	-3.8581295055047056	TGTGAATGCTTTTCTTG
chr15	80342702	80342703	chr15:80342703:T:C	rs11632998	T	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr15	80472068	80472069	chr15:80472069:G:A	rs4778796	G	A	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr15	80472079	80472080	chr15:80472080:G:A	rs12594226	G	A	G	Sox3.mouse_HMG_3	13	1	-	1.7947487609989705	-4.81251184946305	AATGAAGTGCTTTCAAA
chr15	80503203	80503204	chr15:80503204:G:A	rs78341438	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr15	80503786	80503787	chr15:80503787:A:G	rs4238521	A	G	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr15	80532847	80532848	chr15:80532848:C:G	rs112404997	C	G	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr15	80542178	80542179	chr15:80542179:T:C	rs7169055	T	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr15	80586427	80586428	chr15:80586428:T:C	rs8043374	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr15	80802664	80802665	chr15:80802665:T:C	rs12438379	T	C	T	Sox3.mouse_HMG_3	1	1	-	1.5816823741093105	-1.5184475623279847	GATTTATTTCAGTCATT
chr15	80805751	80805752	chr15:80805752:C:T	rs1077540	C	T	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr15	80811445	80811446	chr15:80811446:A:G	rs73497055	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr15	81086174	81086175	chr15:81086175:G:A	rs766993917	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr15	81511252	81511253	chr15:81511253:T:A	rs74028701	T	A	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr15	81516704	81516705	chr15:81516705:C:T	rs8024578	C	T	C	Sox3.mouse_HMG_3	3	1	-	0.7839020696935068	-4.997662817835725	CTTGAAAGCTGTTCATG
chr15	81604807	81604808	chr15:81604808:T:C	rs143746353	T	C	T	Sox3.mouse_HMG_3	14	1	-	7.267686089889466	0.8857399234625551	GATGAAATTCAGTCAAG
chr15	81605952	81605953	chr15:81605953:T:A	rs1482940	T	A	A	Sox3.mouse_HMG_3	5	1	-	2.3566516632290155	-4.250789001249696	GTTGAATTCCCTTCACT
chr15	81954919	81954920	chr15:81954920:A:C	rs17259508	A	C	A	Sox3.mouse_HMG_3	4	1	+	2.0948615797232533	-4.655679928396132	GATGAAGTTCATTGAAG
chr15	82018351	82018352	chr15:82018352:C:A	rs74592152	C	A	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr15	82083020	82083021	chr15:82083021:T:C	rs76698881	T	C	T	Sox3.mouse_HMG_3	8	1	+	6.6899287424931755	6.952048487409281	GTTGAATGTCATTGAAA
chr15	82342828	82342829	chr15:82342829:A:C	rs62010119	A	C	a	Sox3.mouse_HMG_3	10	1	+	1.1617839668492542	-5.589267518332216	AAAGAATGGCATGCAGC
chr15	82937247	82937248	chr15:82937248:T:C	rs114454438	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr15	83697442	83697443	chr15:83697443:C:T	rs28664943	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr15	83859412	83859413	chr15:83859413:G:T	rs35340858	G	T	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr15	84630409	84630410	chr15:84630410:A:G	rs73449310	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr15	84864332	84864333	chr15:84864333:A:C	rs2289138	A	C	C	Sox3.mouse_HMG_3	8	1	+	2.320443235016209	2.5007772135160904	TGAGAATTACATTCTTG
chr15	85010598	85010599	chr15:85010599:A:G	rs68115999	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.4249142074557337	-0.6752157289815587	TATTTATGCCAGTCATT
chr15	85025650	85025651	chr15:85025651:T:C	rs59143550	T	C	T	Sox3.mouse_HMG_3	11	1	+	10.63667175743889	4.5520609313369444	GATGAAAGTTATTCATT
chr15	85031812	85031813	chr15:85031813:G:A	rs289389	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr15	85047269	85047270	chr15:85047270:T:C	rs12909130	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr15	85106718	85106719	chr15:85106719:G:C	rs79199733	G	C	G	Sox3.mouse_HMG_3	0	1	+	4.2971759127189335	2.573384413582315	GATGCAGTACATTCATG
chr15	85125412	85125413	chr15:85125413:G:T	rs6496728	G	T	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr15	85142579	85142580	chr15:85142580:T:C	rs144530124	T	C	T	Sox3.mouse_HMG_3	6	1	+	1.3981347858443747	-5.209815855696424	TTTGAATGTCAGAAATG
chr15	85296935	85296936	chr15:85296936:T:C	rs13379676	T	C	c	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr15	85296970	85296971	chr15:85296971:C:T	rs543171319	C	T	c	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr15	85323899	85323900	chr15:85323900:G:T	rs117999094	G	T	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr15	85340933	85340934	chr15:85340934:C:T	rs1473043	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr15	85383744	85383745	chr15:85383745:C:A	rs2200214	C	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr15	85388793	85388794	chr15:85388794:G:A	rs11074191	G	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr15	85423668	85423669	chr15:85423669:G:T	rs34159880	G	T	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr15	85444241	85444242	chr15:85444242:G:A	rs532794225	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr15	85455509	85455510	chr15:85455510:T:C	rs12443473	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr15	85536519	85536520	chr15:85536520:G:A	rs11636764	G	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr15	85643159	85643160	chr15:85643160:T:C	rs74025647	T	C	T	Sox3.mouse_HMG_3	11	1	+	1.1705203861865543	-4.914090439915392	AATGAAAGATTTTCAGA
chr15	85681338	85681339	chr15:85681339:G:A	rs12909648	G	A	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr15	85687592	85687593	chr15:85687593:T:C	rs338550	T	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr15	85742508	85742509	chr15:85742509:C:T	rs17576534	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr15	85815061	85815062	chr15:85815062:C:G	rs16944778	C	G	C	Sox3.mouse_HMG_3	3	1	-	13.22032772492177	6.470836989216722	TATGAATTACATTCAGT
chr15	85824535	85824536	chr15:85824536:C:T	rs2937940	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr15	85941736	85941737	chr15:85941737:A:G	rs75547395	A	G	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr15	86014237	86014238	chr15:86014238:C:T	rs11857701	C	T	C	Sox3.mouse_HMG_3	3	1	-	0.5929693418445212	-5.18859554568471	TCCGAATGGCAGCCATG
chr15	86014249	86014250	chr15:86014250:C:T	rs11858395	C	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr15	86295847	86295848	chr15:86295848:T:C	rs34896531	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr15	86554873	86554874	chr15:86554874:C:A	rs11073645	C	A	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr15	86556138	86556139	chr15:86556139:A:G	rs73459654	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr15	86689181	86689182	chr15:86689182:T:C	rs986079	T	C	C	Sox3.mouse_HMG_3	12	1	-	0.547532189915209	0.27926820332052915	AATGCATGCCAGACAGA
chr15	86796656	86796657	chr15:86796657:A:G	rs78603375	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr15	86885810	86885811	chr15:86885811:A:G	rs74027145	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr15	86973562	86973563	chr15:86973563:C:T	rs147078591	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr15	87117830	87117831	chr15:87117831:C:T	rs2133570	C	T	C	Sox3.mouse_HMG_3	10	1	-	3.9027744746639064	10.510725116204705	AAGGAATGGCGTTCATT
chr15	87117848	87117849	chr15:87117849:A:G	rs2133571	A	G	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr15	87152151	87152152	chr15:87152152:C:G	rs145607086	C	G	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr15	87221143	87221144	chr15:87221144:T:C	rs75831938	T	C	T	Sox3.mouse_HMG_3	15	1	-	6.518650244449237	5.659868897592816	CATGAGTTGTAGTCAAG
chr15	87264926	87264927	chr15:87264927:C:T	rs2464605	C	T	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr15	87293226	87293227	chr15:87293227:C:G	rs184749513	C	G	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr15	87293237	87293238	chr15:87293238:G:A	rs62032284	G	A	G	Sox3.mouse_HMG_3	0	1	+	0.9155853023828312	0.09030140123648545	GTGGAATTGTGTTCATT
chr15	87352363	87352364	chr15:87352364:G:T	rs3870431	G	T	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr15	87355614	87355615	chr15:87355615:G:A	rs3878253	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr15	87495032	87495033	chr15:87495033:T:C	rs1348259	T	C	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr15	87583059	87583060	chr15:87583060:A:C	rs10520662	A	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr15	87723583	87723584	chr15:87723584:G:C	rs111509914	G	C	G	Sox3.mouse_HMG_3	11	1	+	1.3206390319426082	-3.3295356938635288	GATGAAAGGCAGTGAGA
chr15	87816346	87816347	chr15:87816347:A:G	rs11073744	A	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr15	88022948	88022949	chr15:88022949:G:T	chr15:88022949:G:T	G	T	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr15	88089654	88089655	chr15:88089655:C:G	rs8036369	C	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr15	88463911	88463912	chr15:88463912:T:C	rs16941883	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr15	88467690	88467691	chr15:88467691:G:A	rs200957603	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr15	88606408	88606409	chr15:88606409:T:G	rs113242229	T	G	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr15	88907713	88907714	chr15:88907714:G:C	rs35699851	G	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr15	88936930	88936931	chr15:88936931:T:C	rs35760425	T	C	T	Sox3.mouse_HMG_3	6	1	+	1.7682065892970364	-4.839744052243762	GCACAATTGCATTCATG
chr15	88975200	88975201	chr15:88975201:A:T	rs12899970	A	T	A	Sox3.mouse_HMG_3	11	1	-	5.822209976922761	-0.26240084917918394	GTAGAATGCCATTCAGT
chr15	89109320	89109321	chr15:89109321:G:A	rs293385	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr15	89109340	89109341	chr15:89109341:A:G	rs293384	A	G	A	Sox3.mouse_HMG_3	12	1	-	5.535972126811568	-0.6568814405891981	TGTAAATGGTAGTCAGA
chr15	89109357	89109358	chr15:89109358:C:T	rs117710283	C	T	C	Sox3.mouse_HMG_3	15	1	-	3.9332172126980947	4.791998559554515	TATGAATGGGATTTAGG
chr15	89143739	89143740	chr15:89143740:G:C	rs563269956	G	C	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr15	89176143	89176144	chr15:89176144:C:T	rs1005398	C	T	T	Sox3.mouse_HMG_3	15	1	-	1.6841078457488738	2.542889192605294	AATGTATGATATGCAGA
chr15	89278597	89278598	chr15:89278598:A:G	rs73468711	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr15	89335806	89335807	chr15:89335807:C:G	rs539290105	C	G	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr15	89473259	89473260	chr15:89473260:T:C	rs2075833	T	C	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr15	89630731	89630732	chr15:89630732:C:T	rs115883288	C	T	C	Sox3.mouse_HMG_3	10	1	+	1.2365958738908391	1.2365958738908391	TGTGAATGATCTACATT
chr15	89729838	89729839	chr15:89729839:A:G	rs12148067	A	G	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr15	89740170	89740171	chr15:89740171:T:C	rs187727500	T	C	T	Sox3.mouse_HMG_3	15	1	+	1.5308797365487257	-3.183513675166343	AGTAAATGGTAGTTATG
chr15	90043075	90043076	chr15:90043076:C:G	rs28635283	C	G	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr15	90043118	90043119	chr15:90043119:G:A	rs11856884	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr15	90043122	90043123	chr15:90043123:C:T	rs139419747	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr15	90244496	90244497	chr15:90244497:T:C	rs80350217	T	C	t	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr15	90281954	90281955	chr15:90281955:C:G	rs74753905	C	G	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr15	90323619	90323620	chr15:90323620:G:A	rs4932321	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr15	90338500	90338501	chr15:90338501:T:C	rs17246957	T	C	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr15	90347686	90347687	chr15:90347687:A:T	rs138129953	A	T	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr15	90551051	90551052	chr15:90551052:G:A	rs28681142	G	A	G	Sox3.mouse_HMG_3	1	1	+	1.1223869097950776	4.222516846232369	GGTGAAGTTTCTTCATG
chr15	90551056	90551057	chr15:90551057:G:C	rs62019426	G	C	G	Sox3.mouse_HMG_3	6	1	+	1.1223869097950776	1.2654877534357507	GGTGAAGTTTCTTCATG
chr15	90596818	90596819	chr15:90596819:C:T	rs8028854	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr15	90745377	90745378	chr15:90745378:G:A	rs56087533	G	A	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr15	90987444	90987445	chr15:90987445:G:A	rs8026781	G	A	g	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr15	90995689	90995690	chr15:90995690:C:T	rs78029804	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr15	91101891	91101892	chr15:91101892:C:G	rs4423396	C	G	G	Sox3.mouse_HMG_3	8	1	+	4.878490950986763	5.321273619664695	AATGAATGCTTTTCCTG
chr15	91413632	91413633	chr15:91413633:T:C	rs55651622	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr15	91471097	91471098	chr15:91471098:T:C	rs76410085	T	C	T	Sox3.mouse_HMG_3	9	1	+	2.4266249165351548	2.418988239543409	GATGGATGATAGACAAA
chr15	91783527	91783528	chr15:91783528:C:G	rs4356457	C	G	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr15	91789308	91789309	chr15:91789309:C:T	rs12440455	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr15	91792149	91792150	chr15:91792150:C:T	rs60021292	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr15	91855252	91855253	chr15:91855253:C:G	rs7179294	C	G	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr15	92097780	92097781	chr15:92097781:A:G	chr15:92097781:A:G	A	G	A	Sox3.mouse_HMG_3	11	1	-	4.439071215608164	-1.6455396104937805	GATAAATGATATTCTTC
chr15	92112885	92112886	chr15:92112886:A:G	rs2238360	A	G	A	Sox3.mouse_HMG_3	5	1	+	2.912146771128765	-3.576688150942098	TATGAATGTCAGTATTT
chr15	92175652	92175653	chr15:92175653:G:A	rs748852	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr15	92194203	92194204	chr15:92194204:C:T	rs6496906	C	T	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr15	92205045	92205046	chr15:92205046:A:T	rs11074050	A	T	T	Sox3.mouse_HMG_3	1	1	+	2.0940797751340448	-0.8759970330550504	GATGCTTGTTATTCAGG
chr15	92307145	92307146	chr15:92307146:G:A	rs12917209	G	A	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr15	92469326	92469327	chr15:92469327:C:T	rs17522085	C	T	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr15	92523210	92523211	chr15:92523211:T:C	rs12148722	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr15	92604346	92604347	chr15:92604347:A:G	rs397611	A	G	G	Sox3.mouse_HMG_3	1	1	+	7.798612951130982	4.698483014693691	TATGAATTTGATTCAGT
chr15	92609756	92609757	chr15:92609757:C:T	rs397896	C	T	T	Sox3.mouse_HMG_3	11	1	-	8.471818776023975	3.821644050217834	TATGAATTGCAGCCATC
chr15	92647585	92647586	chr15:92647586:C:A	rs62022580	C	A	C	Sox3.mouse_HMG_3	10	1	-	2.432040907385394	2.288940063744721	TATTAATGCTGGTCATT
chr15	92773517	92773518	chr15:92773518:T:C	rs4411466	T	C	T	Sox3.mouse_HMG_3	15	1	-	2.6682529349508126	1.8094715880943921	AAAGAATGGTGTTCAAT
chr15	92820622	92820623	chr15:92820623:G:A	rs149305086	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr15	92886415	92886416	chr15:92886416:A:G	rs1439620	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr15	92902552	92902553	chr15:92902553:G:A	rs12901651	G	A	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr15	92955875	92955876	chr15:92955876:A:G	rs1223095902	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr15	93001465	93001466	chr15:93001466:T:C	rs6497014	T	C	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr15	93034805	93034806	chr15:93034806:C:T	rs62021472	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr15	93041191	93041192	chr15:93041192:C:T	rs4778075	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr15	93196336	93196337	chr15:93196337:C:A	rs4238469	C	A	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr15	93261697	93261698	chr15:93261698:T:C	rs8042102	T	C	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr15	93283897	93283898	chr15:93283898:T:C	rs11074158	T	C	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr15	93429049	93429050	chr15:93429050:C:T	rs7166163	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr15	93429050	93429051	chr15:93429051:G:A	rs12593825	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr15	93546627	93546628	chr15:93546628:A:G	rs2130111	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.1945012940918667	-5.294333627978995	TGTCAATGACAGTCACT
chr15	93587562	93587563	chr15:93587563:T:G	rs4777918	T	G	G	Sox3.mouse_HMG_3	2	1	+	2.5132534943378957	-4.235726467533707	AATGGATATTATTCAAA
chr15	93587592	93587593	chr15:93587593:T:C	rs4777919	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr15	93720047	93720048	chr15:93720048:A:G	rs6416593	A	G	G	Sox3.mouse_HMG_3	16	1	+	1.6239497903860696	1.6598902468385952	TTTGAAATACAGTCACA
chr15	93825464	93825465	chr15:93825465:A:G	rs6497143	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr15	93825868	93825869	chr15:93825869:A:C	rs8042094	A	C	C	Sox3.mouse_HMG_3	4	1	+	3.6485870948971373	-3.1019544132222503	CATGAATGCTAACCATT
chr15	93825893	93825894	chr15:93825894:C:T	rs8041512	C	T	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr15	93865597	93865598	chr15:93865598:C:T	rs28417566	C	T	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr15	93865620	93865621	chr15:93865621:A:C	rs35966742	A	C	C	Sox3.mouse_HMG_3	11	1	-	0.09256971491741717	-1.3418663853783899	GATGACTTGGATTCTTG
chr15	93889924	93889925	chr15:93889925:C:T	rs7162038	C	T	C	Sox3.mouse_HMG_3	16	1	-	5.204631547529444	5.168691091076918	GTTGGATGGCATTCACG
chr15	93929985	93929986	chr15:93929986:G:A	rs112013747	G	A	G	Sox3.mouse_HMG_3	7	1	+	3.186182102999997	-3.3673666116577294	AAAGAATGTGAGTCATC
chr15	93986922	93986923	chr15:93986923:T:C	rs973410	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr15	94369754	94369755	chr15:94369755:G:A	rs3784654	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr15	94453320	94453321	chr15:94453321:T:C	rs17549574	T	C	T	Sox3.mouse_HMG_3	10	1	-	0.6792174887595218	-5.928733152781276	GCTGGATGTTAGTCACT
chr15	94453338	94453339	chr15:94453339:G:T	rs534745841	G	T	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr15	94601152	94601153	chr15:94601153:A:G	rs2291995	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr15	94606108	94606109	chr15:94606109:C:T	rs80135573	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr15	94770719	94770720	chr15:94770720:A:G	rs12440283	A	G	G	Sox3.mouse_HMG_3	8	1	+	5.515828028460122	6.138944675637935	ACTGAATGATAATCATC
chr15	95284696	95284697	chr15:95284697:A:G	rs4482230	A	G	G	Sox3.mouse_HMG_3	6	1	-	1.7255972879319712	-4.882353353608827	AATGCATGCTACTCAAT
chr15	95303882	95303883	chr15:95303883:C:T	rs139290612	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr15	95394861	95394862	chr15:95394862:T:C	rs546551141	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr15	95454192	95454193	chr15:95454193:C:T	rs11634763	C	T	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr15	95603454	95603455	chr15:95603455:T:C	rs10852039	T	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr15	95644942	95644943	chr15:95644943:G:C	rs4288948	G	C	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr15	95644955	95644956	chr15:95644956:A:C	rs1442417	A	C	C	Sox3.mouse_HMG_3	16	1	-	3.3975659488522467	4.584495465057269	GATGCATTTCATTCCTT
chr15	96047620	96047621	chr15:96047621:C:T	rs8027095	C	T	C	Sox3.mouse_HMG_3	8	1	-	7.125076615914234	6.50195996873642	AGTGAAAGGCAGTCATA
chr15	96048025	96048026	chr15:96048026:A:C	rs8027673	A	C	a	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr15	96159214	96159215	chr15:96159215:A:C	rs146021825	A	C	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr15	96230884	96230885	chr15:96230885:T:C	rs72751207	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr15	96252206	96252207	chr15:96252207:T:G	rs1019025065	T	G	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr15	96253713	96253714	chr15:96253714:A:G	rs76570269	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr15	96253717	96253718	chr15:96253718:T:C	rs1866095	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr15	96969894	96969895	chr15:96969895:A:T	rs74036265	A	T	A	Sox3.mouse_HMG_3	10	1	+	1.8087366715507622	-4.942314813630709	GAGAAATGACATTCAGT
chr15	97256468	97256469	chr15:97256469:C:T	rs189850896	C	T	a	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr15	97463795	97463796	chr15:97463796:C:G	rs4570821	C	G	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr15	97773108	97773109	chr15:97773109:T:C	rs78690249	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr15	98289868	98289869	chr15:98289869:A:T	rs1023780	A	T	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr15	98726053	98726054	chr15:98726054:G:C	rs72767973	G	C	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr15	98734663	98734664	chr15:98734664:A:G	rs45557931	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr15	98746377	98746378	chr15:98746378:G:C	rs59350108	G	C	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr15	98746397	98746398	chr15:98746398:T:G	rs76414474	T	G	T	Sox3.mouse_HMG_3	10	1	-	2.9213525816359125	-3.829698903545558	CAAGAATGCCATCCAAG
chr15	98746408	98746409	chr15:98746409:C:G	rs2137683	C	G	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr15	98771134	98771135	chr15:98771135:G:A	rs11635688	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr15	98827425	98827426	chr15:98827426:C:T	rs7173077	C	T	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr15	98860479	98860480	chr15:98860480:G:T	rs978464033	G	T	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr15	98863649	98863650	chr15:98863650:G:C	rs2684780	G	C	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr15	98955564	98955565	chr15:98955565:C:T	rs28582005	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr15	99073055	99073056	chr15:99073056:A:G	rs1703792	A	G	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr15	99109624	99109625	chr15:99109625:G:C	rs1004979916	G	C	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr15	99173965	99173966	chr15:99173966:C:T	rs75227143	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr15	99277475	99277476	chr15:99277476:A:G	rs62023780	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr15	99407387	99407388	chr15:99407388:A:C	rs12593500	A	C	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr15	99472548	99472549	chr15:99472549:C:A	rs193276149	C	A	C	Sox3.mouse_HMG_3	3	1	-	2.362773244971309	-4.543721239543404	GATGAATTACACCCAGA
chr15	99494678	99494679	chr15:99494679:A:G	rs111929109	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr15	99510231	99510232	chr15:99510232:A:C	rs11853151	A	C	A	Sox3.mouse_HMG_3	4	1	+	1.3347434457359753	-5.415798062383412	TGTGAATGGCTGTAATG
chr15	99585855	99585856	chr15:99585856:G:A	rs2570931	G	A	g	Sox3.mouse_HMG_3	8	1	+	-0.7528883301487912	-1.3760049773266043	GAGGAGTGGCTTTCATA
chr15	99658280	99658281	chr15:99658281:G:A	rs762110754	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr15	99706628	99706629	chr15:99706629:T:G	rs325409	T	G	T	Sox3.mouse_HMG_3	11	1	+	3.178553952344844	1.744117852049037	AGAAAATGACATTCATA
chr15	99751958	99751959	chr15:99751959:T:C	rs55842367	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr15	99756042	99756043	chr15:99756043:G:A	rs115531836	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr15	99853567	99853568	chr15:99853568:G:A	rs34768750	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr15	99992661	99992662	chr15:99992662:C:T	rs2573606	C	T	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr15	100093878	100093879	chr15:100093879:C:T	rs8038333	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr15	100245584	100245585	chr15:100245585:T:G	rs12148837	T	G	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr15	100249348	100249349	chr15:100249349:G:A	rs376437880	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr15	100249356	100249357	chr15:100249357:G:A	rs8023275	G	A	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr15	100266057	100266058	chr15:100266058:T:C	rs113961275	T	C	T	Sox3.mouse_HMG_3	1	1	-	5.606697164058484	2.5065672276211917	CATGAATTTTACTCAGT
chr15	100291486	100291487	chr15:100291487:T:C	chr15:100291487:T:C	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr15	100307504	100307505	chr15:100307505:A:G	rs79380281	A	G	A	Sox3.mouse_HMG_3	2	1	-	2.924477298888089	-3.6814018193428426	TATGAGCTTTAGTCATG
chr15	100425422	100425423	chr15:100425423:T:C	rs2585218	T	C	C	Sox3.mouse_HMG_3	0	1	+	1.2340597467803873	-0.22081089855647784	TCTGAATGTGAGACATG
chr15	100486651	100486652	chr15:100486652:C:T	rs2587771	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr15	100528837	100528838	chr15:100528838:G:T	rs62619252	G	T	g	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr15	100529959	100529960	chr15:100529960:C:G	rs57737119	C	G	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr15	100561448	100561449	chr15:100561449:A:G	rs11855068	A	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr15	100720433	100720434	chr15:100720434:G:A	rs76104410	G	A	G	Sox3.mouse_HMG_3	3	1	+	0.486365319923324	-5.2951995676059065	AGTGGATTGCAGCCATG
chr15	100759685	100759686	chr15:100759686:C:T	rs8043022	C	T	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr15	100968368	100968369	chr15:100968369:G:T	rs75612594	G	T	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr15	101213188	101213189	chr15:101213189:T:G	rs28623369	T	G	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr15	101391958	101391959	chr15:101391959:G:A	rs3784481	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr15	101451741	101451742	chr15:101451742:C:T	rs7173205	C	T	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr15	101466119	101466120	chr15:101466120:G:T	rs12903048	G	T	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr15	101466147	101466148	chr15:101466148:G:A	rs8026048	G	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr15	101552591	101552592	chr15:101552592:C:G	rs11638504	C	G	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr16	44534	44535	chr16:44535:G:A	rs216583	G	A	N	Sox3.mouse_HMG_3	1	1	+	2.75179317529509	5.851923111732383	CGTGAATGCTACTCAGC
chr16	56776	56777	chr16:56777:G:C	rs216597	G	C	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr16	483464	483465	chr16:483465:C:G	rs7191283	C	G	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr16	629273	629274	chr16:629274:G:A	rs35915772	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr16	803168	803169	chr16:803169:C:T	rs4984932	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr16	1357790	1357791	chr16:1357791:T:C	rs4984644	T	C	G	Sox3.mouse_HMG_3	12	1	+	-0.6112992492373326	-6.804152816638098	CTGGGATGACAGTCATG
chr16	1357807	1357808	chr16:1357808:T:C	rs4984820	T	C	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr16	1388971	1388972	chr16:1388972:C:T	rs8048774	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr16	1884422	1884423	chr16:1884423:G:T	chr16:1884423:G:T	G	T	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr16	2212679	2212680	chr16:2212680:C:T	rs138025721	C	T	c	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr16	2407498	2407499	chr16:2407499:G:T	rs66496842	G	T	-	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr16	2611379	2611380	chr16:2611380:G:C	rs58721057	G	C	g	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr16	2687054	2687055	chr16:2687055:C:A	rs74966633	C	A	N	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr16	2957944	2957945	chr16:2957945:G:A	rs569388161	G	A	g	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr16	3192614	3192615	chr16:3192615:T:C	rs427135	T	C	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr16	3202628	3202629	chr16:3202629:G:T	rs9936364	G	T	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr16	3553275	3553276	chr16:3553276:C:G	rs56106426	C	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr16	3959457	3959458	chr16:3959458:G:A	rs74003474	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr16	4015493	4015494	chr16:4015494:C:T	rs74702385	C	T	C	Sox3.mouse_HMG_3	13	1	-	3.5530272124923976	3.777651148977041	AATGAATGACAGCGATA
chr16	4015524	4015525	chr16:4015525:A:T	chr16:4015525:A:T	A	T	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr16	4054449	4054450	chr16:4054450:A:T	rs74696692	A	T	A	Sox3.mouse_HMG_3	16	1	+	1.8998978271872173	0.7489087674347211	AATGATTTTCACTCAAA
chr16	4219837	4219838	chr16:4219838:G:A	rs117695927	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr16	4241422	4241423	chr16:4241423:C:T	rs80076814	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr16	4266496	4266497	chr16:4266497:T:G	rs6500594	T	G	T	Sox3.mouse_HMG_3	5	1	-	1.7644680140314903	-4.842972650447221	AATGCATTCTATTAAAG
chr16	4425442	4425443	chr16:4425443:T:C	rs1016334601	T	C	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr16	4425443	4425444	chr16:4425444:A:G	chr16:4425444:A:G	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr16	4425456	4425457	chr16:4425457:G:A	rs1025472814	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr16	4425482	4425483	chr16:4425483:T:G	rs559280906	T	G	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr16	4461330	4461331	chr16:4461331:C:T	rs111749218	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr16	4534404	4534405	chr16:4534405:C:T	rs4786519	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr16	4548253	4548254	chr16:4548254:T:G	rs75780751	T	G	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr16	4641178	4641179	chr16:4641179:C:T	rs138778005	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr16	4661901	4661902	chr16:4661902:T:A	rs28427339	T	A	A	Sox3.mouse_HMG_3	14	1	-	2.335487126763663	-4.046459039663247	TAAGAGTTCCATTCAGA
chr16	4677026	4677027	chr16:4677027:T:G	rs149252364	T	G	T	Sox3.mouse_HMG_3	6	1	+	1.488755862852122	-5.2622956223293516	GCTGATTTGCAGTCACG
chr16	4677046	4677047	chr16:4677047:G:T	rs147535575	G	T	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr16	4747224	4747225	chr16:4747225:T:C	rs759989	T	C	T	Sox3.mouse_HMG_3	6	1	+	6.139288373778178	-0.4686622677626182	CCTGAATTGCATTCTTG
chr16	4770007	4770008	chr16:4770008:A:G	rs77598609	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr16	4913439	4913440	chr16:4913440:T:A	rs141191494	T	A	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr16	4913456	4913457	chr16:4913457:T:C	rs12444913	T	C	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr16	4988781	4988782	chr16:4988782:C:G	rs2908686	C	G	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr16	5090762	5090763	chr16:5090763:C:T	rs9673906	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr16	5364600	5364601	chr16:5364601:C:G	rs34294205	C	G	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr16	5406155	5406156	chr16:5406156:A:G	rs56313004	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr16	5406184	5406185	chr16:5406185:C:A	rs12930277	C	A	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr16	5406326	5406327	chr16:5406327:G:A	rs13337877	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr16	5406800	5406801	chr16:5406801:A:G	rs72777540	A	G	C	Sox3.mouse_HMG_3	6	1	-	13.427378815187112	6.819428173646313	ACTGAATTGTATTCATG
chr16	5609386	5609387	chr16:5609387:T:G	rs34769568	T	G	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr16	5640535	5640536	chr16:5640536:A:G	rs11643185	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr16	5640952	5640953	chr16:5640953:C:A	rs12449096	C	A	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr16	5641110	5641111	chr16:5641111:C:T	rs7342801	C	T	-	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr16	5685072	5685073	chr16:5685073:T:C	rs8056887	T	C	T	Sox3.mouse_HMG_3	6	1	+	0.2103537780870961	-6.3975968634537	GATGAATTGGTCTCATA
chr16	5706496	5706497	chr16:5706497:G:A	rs66549605	G	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr16	5945386	5945387	chr16:5945387:T:G	rs4786794	T	G	G	Sox3.mouse_HMG_3	9	1	+	0.9721819773503628	-4.375383707015947	GAGGAATGGTATTCTGC
chr16	6318364	6318365	chr16:6318365:G:C	rs12922598	G	C	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr16	6318378	6318379	chr16:6318379:G:A	chr16:6318379:G:A	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr16	6510524	6510525	chr16:6510525:T:C	rs17442866	T	C	T	Sox3.mouse_HMG_3	4	1	-	5.363907124015942	-1.0189096039781258	AATGAATGATAATAATG
chr16	6689700	6689701	chr16:6689701:G:A	rs7189797	G	A	A	Sox3.mouse_HMG_3	9	1	-	2.769812747549407	2.777449424541155	CATGAATGACGGACATG
chr16	6714145	6714146	chr16:6714146:C:G	rs718971	C	G	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr16	6728688	6728689	chr16:6728689:T:C	rs12921288	T	C	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr16	6777880	6777881	chr16:6777881:G:A	rs112345403	G	A	G	Sox3.mouse_HMG_3	0	1	+	0.9660086823317733	0.1407247811854293	GCTGACTTCCATCCATA
chr16	6829215	6829216	chr16:6829216:A:G	rs12934725	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr16	6832103	6832104	chr16:6832104:T:C	rs4786942	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr16	6837006	6837007	chr16:6837007:A:G	rs187239100	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr16	6841363	6841364	chr16:6841364:G:C	rs7500622	G	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr16	6841824	6841825	chr16:6841825:G:A	rs7501416	G	A	A	Sox3.mouse_HMG_3	15	1	+	5.331959672313625	6.190741019170045	TGTGAATGTTCTTCAGG
chr16	6860208	6860209	chr16:6860209:A:G	rs11640581	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr16	6891575	6891576	chr16:6891576:A:G	rs117032834	A	G	A	Sox3.mouse_HMG_3	15	1	-	-0.6752284708789371	-5.389621882594006	GAGGAATGCTATGCCTG
chr16	6940515	6940516	chr16:6940516:A:G	rs9936119	A	G	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr16	7010111	7010112	chr16:7010112:C:T	rs554521784	C	T	C	Sox3.mouse_HMG_3	6	1	+	2.086121738202067	8.694072379742865	CATGAACTCTATTCTTT
chr16	7101331	7101332	chr16:7101332:C:T	rs1382478	C	T	T	Sox3.mouse_HMG_3	13	1	+	2.2155355480839747	-4.391725062378045	AGAAAATGCTATTCATT
chr16	7666174	7666175	chr16:7666175:A:G	rs9931894	A	G	A	Sox3.mouse_HMG_3	2	1	-	3.1971228341795284	-3.4087562840514023	AATGAATGGGCTTCAGA
chr16	7912258	7912259	chr16:7912259:A:G	rs7184737	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr16	8098873	8098874	chr16:8098874:C:A	rs72636257	C	A	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr16	8098902	8098903	chr16:8098903:A:G	rs12923757	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr16	8146188	8146189	chr16:8146189:C:T	rs7205385	C	T	T	Sox3.mouse_HMG_3	13	1	+	2.461804555259362	-4.145456055202658	GATGGCTGTTATTCAGG
chr16	8237762	8237763	chr16:8237763:A:T	rs17145489	A	T	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr16	8249850	8249851	chr16:8249851:G:A	rs13330666	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr16	8356079	8356080	chr16:8356080:A:G	rs775837803	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr16	8397264	8397265	chr16:8397265:C:G	rs17145791	C	G	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr16	8718805	8718806	chr16:8718806:C:A	rs6497548	C	A	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr16	8932241	8932242	chr16:8932242:C:T	rs77188284	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr16	8961926	8961927	chr16:8961927:T:C	rs139826487	T	C	T	Sox3.mouse_HMG_3	5	1	-	4.436434131649687	-2.052400790421177	TATCAATGGCAGTAATG
chr16	9079259	9079260	chr16:9079260:C:T	rs867660750	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr16	9079285	9079286	chr16:9079286:C:T	rs9673524	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr16	9093136	9093137	chr16:9093137:G:C	rs1294325193	G	C	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr16	9165752	9165753	chr16:9165753:G:T	rs3743831	G	T	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr16	9598015	9598016	chr16:9598016:G:A	rs4265804	G	A	A	Sox3.mouse_HMG_3	3	1	+	3.241824824798875	-2.539740062730357	TTCGAATGGTATCCATG
chr16	9598035	9598036	chr16:9598036:G:A	rs16965779	G	A	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr16	9635347	9635348	chr16:9635348:T:G	rs115892046	T	G	T	Sox3.mouse_HMG_3	12	1	+	1.072786715598982	-5.3082881307229295	TGTCTATTACATTCATG
chr16	9712893	9712894	chr16:9712894:T:C	rs28372311	T	C	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr16	9969735	9969736	chr16:9969736:A:G	rs12102827	A	G	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr16	9976881	9976882	chr16:9976882:G:T	rs7190716	G	T	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr16	10080817	10080818	chr16:10080818:C:G	rs140613370	C	G	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr16	10080819	10080820	chr16:10080820:C:T	rs1448268	C	T	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr16	10085380	10085381	chr16:10085381:C:T	rs76990086	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr16	10310662	10310663	chr16:10310663:A:G	rs1097922	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr16	10376695	10376696	chr16:10376696:T:C	rs12918978	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr16	10468880	10468881	chr16:10468881:G:T	rs62027484	G	T	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr16	10573378	10573379	chr16:10573379:G:C	rs12921306	G	C	G	Sox3.mouse_HMG_3	1	1	-	1.4002247665509746	2.4769543439695765	TCTGGATGCTGTTCATG
chr16	10586569	10586570	chr16:10586570:T:C	chr16:10586570:T:C	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr16	10625073	10625074	chr16:10625074:C:T	rs12325084	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr16	10676683	10676684	chr16:10676684:G:A	rs1079016	G	A	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr16	10722811	10722812	chr16:10722812:T:G	rs1729056	T	G	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr16	10984757	10984758	chr16:10984758:G:A	rs7202408	G	A	g	Sox3.mouse_HMG_3	16	1	+	5.538684044168099	5.502743587715574	AATGAATGTAAGTCACG
chr16	11005847	11005848	chr16:11005848:G:A	rs565306743	G	A	G	Sox3.mouse_HMG_3	8	1	+	0.5308172407901179	-0.09229940638769607	TCTGACTCGCAGTCATG
chr16	11076903	11076904	chr16:11076904:C:T	rs7184491	C	T	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr16	11080156	11080157	chr16:11080157:G:A	rs9652600	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr16	11329362	11329363	chr16:11329363:T:C	rs114488454	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr16	11340984	11340985	chr16:11340985:C:G	rs7201452	C	G	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr16	11442572	11442573	chr16:11442573:A:C	rs8044309	A	C	A	Sox3.mouse_HMG_3	12	1	-	0.5616279873870663	-5.819446858934843	AGTAAATGGCAGTCGTT
chr16	11489827	11489828	chr16:11489828:C:T	rs11862887	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr16	11554898	11554899	chr16:11554899:C:T	rs11646946	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr16	11569896	11569897	chr16:11569897:G:C	rs112356538	G	C	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr16	11584098	11584099	chr16:11584099:A:C	rs12444653	A	C	A	Sox3.mouse_HMG_3	6	1	-	1.3240131541113325	-5.427038331070139	TCTGAATTTGATTGATG
chr16	11587841	11587842	chr16:11587842:A:G	rs12923640	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr16	11624404	11624405	chr16:11624405:T:C	rs6498232	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr16	11682651	11682652	chr16:11682652:G:A	rs141557918	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr16	11695333	11695334	chr16:11695334:C:T	rs17606098	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr16	11810535	11810536	chr16:11810536:G:T	rs13330068	G	T	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr16	11810558	11810559	chr16:11810559:C:T	rs80244698	C	T	C	Sox3.mouse_HMG_3	11	1	-	0.36144356941915623	-4.288731156386983	TTTGGATTACAGGCATG
chr16	11810571	11810572	chr16:11810572:A:T	rs12102922	A	T	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr16	11978266	11978267	chr16:11978267:G:A	rs442332	G	A	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr16	11986684	11986685	chr16:11986685:A:C	rs434455	A	C	A	Sox3.mouse_HMG_3	0	1	+	0.6969377007689643	-0.20156989722130936	AGTCAATTCCATTTATG
chr16	11998717	11998718	chr16:11998718:C:T	rs11639821	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr16	12024567	12024568	chr16:12024568:A:G	rs145545649	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr16	12048314	12048315	chr16:12048315:T:G	rs3826097	T	G	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr16	12048317	12048318	chr16:12048318:C:G	rs3826098	C	G	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr16	12139330	12139331	chr16:12139331:G:A	rs34147612	G	A	G	Sox3.mouse_HMG_3	5	1	-	0.7375113963921702	0.7375113963921702	TGTGACTGTCAGTAATA
chr16	12166340	12166341	chr16:12166341:C:A	rs141963105	C	A	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr16	12184544	12184545	chr16:12184545:A:G	rs73521818	A	G	A	Sox3.mouse_HMG_3	14	1	+	2.1626958120530686	-4.219250354373842	AATAAATGGCATCCAGT
chr16	12231784	12231785	chr16:12231785:G:C	rs112323584	G	C	G	Sox3.mouse_HMG_3	8	1	-	0.7596730300973424	1.2024556987752744	TATGAATGCTGGTGAGA
chr16	12314345	12314346	chr16:12314346:A:G	rs752493801	A	G	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr16	12336457	12336458	chr16:12336458:G:C	rs373944160	G	C	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr16	12526878	12526879	chr16:12526879:C:A	rs2269445	C	A	c	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr16	12567087	12567088	chr16:12567088:G:A	rs2865574	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr16	12575676	12575677	chr16:12575677:A:G	rs67389960	A	G	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr16	12575727	12575728	chr16:12575728:A:G	rs66627469	A	G	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr16	12598067	12598068	chr16:12598068:G:A	rs9934623	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.0194086279054682	-4.762156259623762	AATGAATTCAAGTCCAG
chr16	12610622	12610623	chr16:12610623:C:A	rs2217271	C	A	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr16	12749747	12749748	chr16:12749748:T:C	rs2865632	T	C	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr16	12795733	12795734	chr16:12795734:C:G	rs8050212	C	G	c	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr16	12971669	12971670	chr16:12971670:G:A	rs11075176	G	A	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr16	13045900	13045901	chr16:13045901:A:G	rs17240162	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr16	13120814	13120815	chr16:13120815:G:A	rs12444019	G	A	A	Sox3.mouse_HMG_3	3	1	+	1.547742802937062	-4.233822084592169	CCTGTATGACAGTCAGA
chr16	13438192	13438193	chr16:13438193:C:G	rs72771675	C	G	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr16	13557765	13557766	chr16:13557766:G:A	rs116110888	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr16	13910406	13910407	chr16:13910407:T:C	rs74009234	T	C	C	Sox3.mouse_HMG_3	13	1	-	1.1994199925434683	0.9747960560588245	TATGAAATTTATTAAGG
chr16	14003220	14003221	chr16:14003221:G:A	rs535656626	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr16	14013608	14013609	chr16:14013609:G:A	rs116176151	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr16	14293894	14293895	chr16:14293895:T:G	rs111714425	T	G	T	Sox3.mouse_HMG_3	8	1	-	1.3622513698220675	1.5425853483219487	AATGAATGACAGGCCAG
chr16	14372257	14372258	chr16:14372258:C:T	rs12922485	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr16	14533272	14533273	chr16:14533273:G:C	rs142309238	G	C	-	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr16	14581043	14581044	chr16:14581044:A:T	rs188966364	A	T	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr16	14628309	14628310	chr16:14628310:A:G	chr16:14628310:A:G	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.1661462903434847	-4.441804351197313	TAAAAATGCCAGTCAAT
chr16	14672307	14672308	chr16:14672308:C:G	rs72546340	C	G	.	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr16	15028954	15028955	chr16:15028955:C:G	rs112323280	C	G	.	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr16	15257446	15257447	chr16:15257447:T:A	rs62037001	T	A	.	Sox3.mouse_HMG_3	15	1	+	0.7503066244279535	-1.5135028398088677	GCTGAAATACACTCATA
chr16	15428271	15428272	chr16:15428272:G:A	rs113862282	G	A	G	Sox3.mouse_HMG_3	14	1	+	3.284311161229601	9.666257327656513	AATGAAATGTATTCGTT
chr16	15485079	15485080	chr16:15485080:C:T	rs72774892	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr16	15507762	15507763	chr16:15507763:T:C	rs153782	T	C	T	Sox3.mouse_HMG_3	11	1	+	1.0041826322499623	-5.080428193851983	TGTGTGTGATATTCATT
chr16	15745176	15745177	chr16:15745177:G:A	rs1050113	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr16	15865898	15865899	chr16:15865899:G:A	rs3743515	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr16	15865918	15865919	chr16:15865919:G:T	rs11129	G	T	G	Sox3.mouse_HMG_3	9	1	-	3.8645032660874348	-2.1897153584208846	CAGGAATTGCAATCATG
chr16	15866120	15866121	chr16:15866121:A:G	rs3743517	A	G	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr16	15944126	15944127	chr16:15944127:G:A	rs6498589	G	A	-	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr16	16089147	16089148	chr16:16089148:G:A	rs3851710	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr16	16127861	16127862	chr16:16127862:C:T	rs1330629644	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr16	16127865	16127866	chr16:16127866:G:A	rs55802107	G	A	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr16	16550020	16550021	chr16:16550021:A:C	rs2547768	A	C	A	Sox3.mouse_HMG_3	10	1	+	2.408091291132058	-4.342960194049411	AATGAATTCCACTGATC
chr16	16793232	16793233	chr16:16793233:C:T	rs12932564	C	T	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr16	16893889	16893890	chr16:16893890:T:C	rs11075318	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr16	17013468	17013469	chr16:17013469:T:A	rs7204769	T	A	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr16	17162932	17162933	chr16:17162933:A:C	rs56226631	A	C	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr16	17212803	17212804	chr16:17212804:C:T	rs2311139	C	T	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr16	17289700	17289701	chr16:17289701:C:T	rs62033198	C	T	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr16	17325694	17325695	chr16:17325695:T:A	rs116974291	T	A	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr16	17453523	17453524	chr16:17453524:A:G	rs8047118	A	G	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr16	17798628	17798629	chr16:17798629:C:T	rs11860700	C	T	T	Sox3.mouse_HMG_3	0	1	-	9.935798169586642	9.110514268440298	GAAGAATTTCATTCATC
chr16	17798636	17798637	chr16:17798637:T:G	rs118162261	T	G	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr16	18789315	18789316	chr16:18789316:G:C	rs73541341	G	C	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr16	18842026	18842027	chr16:18842027:T:C	rs2270849	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr16	19108615	19108616	chr16:19108616:G:A	rs76701082	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr16	19136705	19136706	chr16:19136706:A:C	rs117761659	A	C	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr16	19297411	19297412	chr16:19297412:G:A	rs179211	G	A	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr16	19397256	19397257	chr16:19397257:A:G	rs11644356	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr16	19522443	19522444	chr16:19522444:G:A	rs1194735147	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr16	19541083	19541084	chr16:19541084:G:A	rs4782253	G	A	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr16	19556206	19556207	chr16:19556207:C:T	rs115218178	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr16	19696873	19696874	chr16:19696874:A:G	rs7187976	A	G	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr16	19758382	19758383	chr16:19758383:C:T	rs8043979	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr16	20163410	20163411	chr16:20163411:A:G	rs4436787	A	G	A	Sox3.mouse_HMG_3	16	1	-	3.5735897083741754	2.7066629689018966	ATTGAATTGTTTTCAGT
chr16	20599079	20599080	chr16:20599080:G:A	rs71374818	G	A	.	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr16	20599088	20599089	chr16:20599089:A:G	rs561772515	A	G	.	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr16	21021508	21021509	chr16:21021509:G:C	rs170674	G	C	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr16	21273235	21273236	chr16:21273236:G:A	rs2629089	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr16	21302727	21302728	chr16:21302728:T:C	rs1016709347	T	C	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr16	21510628	21510629	chr16:21510629:A:C	rs1424868606	A	C	.	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr16	22188674	22188675	chr16:22188675:C:T	rs553215252	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr16	22372366	22372367	chr16:22372367:G:A	chr16:22372367:G:A	G	A	G	Sox3.mouse_HMG_3	13	1	-	0.9489986156660168	-5.658261994796004	ACAGAATTGTTTTCATG
chr16	22615921	22615922	chr16:22615922:T:C	rs12445745	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr16	22616552	22616553	chr16:22616553:A:C	rs377201275	A	C	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr16	22942691	22942692	chr16:22942692:C:T	rs117113089	C	T	C	Sox3.mouse_HMG_3	16	1	+	0.34003220219483743	1.2069589416671165	TGAGAGTTCCATTCATC
chr16	23026988	23026989	chr16:23026989:C:T	rs144785686	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr16	23258970	23258971	chr16:23258971:C:T	rs9939129	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr16	23514826	23514827	chr16:23514827:A:G	rs145948178	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr16	23518767	23518768	chr16:23518768:T:C	rs4968016	T	C	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr16	23834474	23834475	chr16:23834475:C:T	rs3760106	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr16	23990938	23990939	chr16:23990939:A:G	rs11074596	A	G	a	Sox3.mouse_HMG_3	10	1	+	5.812203943739918	-0.7957466978008785	AATGAACTGCATTCAGC
chr16	24007541	24007542	chr16:24007542:A:G	rs4788423	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.3529466787796727	-0.7471832576576174	AATGAATTGCTTCCAAA
chr16	24114416	24114417	chr16:24114417:T:C	rs28603301	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr16	24120002	24120003	chr16:24120003:T:G	rs2283541	T	G	T	Sox3.mouse_HMG_3	10	1	-	7.823518639264812	1.0724671540833426	GCTGAATGGCACTCATT
chr16	24254851	24254852	chr16:24254852:A:C	rs2239341	A	C	A	Sox3.mouse_HMG_3	2	1	-	3.5519474196039718	-3.197032542267633	TTTGAATGTTATTTAGC
chr16	24450885	24450886	chr16:24450886:T:C	rs4788105	T	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr16	24525474	24525475	chr16:24525475:T:C	rs80035789	T	C	T	Sox3.mouse_HMG_3	5	1	-	1.3491304658919467	-5.139704456178917	GGGAAATGGTATTCAAA
chr16	24538495	24538496	chr16:24538496:A:G	rs28361950	A	G	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr16	24669117	24669118	chr16:24669118:A:G	rs16973907	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr16	24701167	24701168	chr16:24701168:A:G	rs9302425	A	G	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr16	24718449	24718450	chr16:24718450:C:T	rs766181	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr16	24721847	24721848	chr16:24721848:A:G	rs80063088	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.9221384278917297	-2.7922549838233386	TGTGAGAGTCATTCATA
chr16	24732335	24732336	chr16:24732336:A:G	rs2547033	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr16	24748641	24748642	chr16:24748642:T:C	rs200527	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr16	24843181	24843182	chr16:24843182:G:T	rs57056564	G	T	G	Sox3.mouse_HMG_3	0	1	+	0.35815637674737255	0.0892355229476185	GATGAAAGTTTTTCACG
chr16	25224894	25224895	chr16:25224895:G:A	rs74015621	G	A	G	Sox3.mouse_HMG_3	3	1	+	0.6576406406656868	-5.123924246863545	TGTGAACTGTGTTCATT
chr16	25445225	25445226	chr16:25445226:T:C	rs1034599	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr16	25721518	25721519	chr16:25721519:C:T	rs62034431	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr16	25948480	25948481	chr16:25948481:G:C	rs12448631	G	C	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr16	26220873	26220874	chr16:26220874:G:A	rs60505201	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr16	26281962	26281963	chr16:26281963:A:G	rs1115083	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr16	26500387	26500388	chr16:26500388:A:G	rs8052711	A	G	G	Sox3.mouse_HMG_3	6	1	-	0.9611364202455577	-5.646814221295242	TGTGATTTTTTTTCATA
chr16	26727944	26727945	chr16:26727945:G:T	rs75345066	G	T	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr16	26950569	26950570	chr16:26950570:T:C	rs74578222	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr16	27026760	27026761	chr16:27026761:G:T	rs10852311	G	T	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr16	27087362	27087363	chr16:27087363:T:A	rs62029903	T	A	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr16	27161655	27161656	chr16:27161656:G:C	rs1006306	G	C	G	Sox3.mouse_HMG_3	13	1	-	0.056956114952550374	-6.55030449550947	CATGGAAGACAGTCAAA
chr16	27161667	27161668	chr16:27161668:T:C	rs1554172	T	C	C	Sox3.mouse_HMG_3	1	1	-	0.056956114952550374	-3.043173821484743	CATGGAAGACAGTCAAA
chr16	27267305	27267306	chr16:27267306:G:A	rs72782383	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr16	27267314	27267315	chr16:27267315:C:T	rs116942558	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr16	27288010	27288011	chr16:27288011:G:A	rs116949284	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr16	27289274	27289275	chr16:27289275:T:C	rs11074852	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr16	27516138	27516139	chr16:27516139:C:G	rs148761519	C	G	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr16	27691231	27691232	chr16:27691232:G:A	chr16:27691232:G:A	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr16	27759491	27759492	chr16:27759492:C:T	rs6498034	C	T	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr16	27766509	27766510	chr16:27766510:A:G	rs8043555	A	G	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr16	27960779	27960780	chr16:27960780:T:A	rs886219	T	A	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr16	27978951	27978952	chr16:27978952:C:A	rs6498054	C	A	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr16	28068477	28068478	chr16:28068478:A:C	rs205425	A	C	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr16	28503532	28503533	chr16:28503533:G:T	rs181209	G	T	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr16	28620263	28620264	chr16:28620264:T:G	rs1968752	T	G	.	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr16	29121140	29121141	chr16:29121141:A:G	rs1630274	A	G	.	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr16	29137243	29137244	chr16:29137244:T:C	rs1642026	T	C	.	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr16	29219564	29219565	chr16:29219565:C:T	rs7187838	C	T	.	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr16	29266794	29266795	chr16:29266795:A:C	rs563173207	A	C	a	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr16	29277382	29277383	chr16:29277383:T:C	rs55680018	T	C	.	Sox3.mouse_HMG_3	8	1	-	5.579494432617414	6.202611079795227	GTTAAATGACATTCAAC
chr16	29299868	29299869	chr16:29299869:T:C	rs62038975	T	C	.	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr16	29808870	29808871	chr16:29808871:A:G	rs141791936	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr16	29808879	29808880	chr16:29808880:C:T	rs76636938	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr16	29808896	29808897	chr16:29808897:G:A	chr16:29808897:G:A	G	A	G	Sox3.mouse_HMG_3	9	1	-	0.4106162777037976	0.4182529546955436	AATGATGTTCATTCAGG
chr16	29956112	29956113	chr16:29956113:A:G	rs4788196	A	G	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr16	31262208	31262209	chr16:31262209:T:A	rs7196256	T	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr16	31277805	31277806	chr16:31277806:T:C	rs41370044	T	C	T	Sox3.mouse_HMG_3	1	1	+	1.9422900842899442	0.7355073786231454	ATTGAATTGTAATTATG
chr16	31519757	31519758	chr16:31519758:G:T	rs59813627	G	T	g	Sox3.mouse_HMG_3	8	1	-	0.8611242157451436	0.680790237245262	TTTGTATTCCACTCATT
chr16	31695842	31695843	chr16:31695843:T:C	rs933334756	T	C	t	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr16	31713133	31713134	chr16:31713134:A:C	chr16:31713134:A:C	A	C	a	Sox3.mouse_HMG_3	6	1	-	0.023154054947983616	-6.7278974302334875	TTTGAATGGGAGACAGG
chr16	31869660	31869661	chr16:31869661:A:C	chr16:31869661:A:C	A	C	.	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr16	31869676	31869677	chr16:31869677:T:G	chr16:31869677:T:G	T	G	.	Sox3.mouse_HMG_3	12	1	+	1.9916121548501493	-4.389462691471761	TGACAATGGCAGTCATG
chr16	32645339	32645340	chr16:32645340:T:G	rs542294584	T	G	t	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr16	33034822	33034823	chr16:33034823:A:G	rs62048331	A	G	a	Sox3.mouse_HMG_3	9	1	-	3.2224184301966035	3.2147817532048566	TGTGGATTTTATTCACA
chr16	34096196	34096197	chr16:34096197:T:C	rs79702793	T	C	.	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr16	34574221	34574222	chr16:34574222:T:C	rs1222614021	T	C	.	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr16	34574226	34574227	chr16:34574227:G:A	rs1347717593	G	A	.	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr16	34585650	34585651	chr16:34585651:C:A	rs894353151	C	A	.	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr16	34591066	34591067	chr16:34591067:T:C	rs1463838987	T	C	.	Sox3.mouse_HMG_3	14	1	-	2.4688260970702425	-3.913120069356668	AATGAATTGTCATCAAA
chr16	34594251	34594252	chr16:34594252:T:A	rs904323822	T	A	.	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr16	34595603	34595604	chr16:34595604:T:C	chr16:34595604:T:C	T	C	.	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr16	35202869	35202870	chr16:35202870:C:A	rs117863689	C	A	.	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr16	35457065	35457066	chr16:35457066:C:T	rs566041744	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr16	46387358	46387359	chr16:46387359:A:G	rs28837417	A	G	.	Sox3.mouse_HMG_3	5	1	-	4.427505035603988	4.427505035603988	GATGATTGCCATTGATT
chr16	46387380	46387381	chr16:46387381:C:T	rs4511562	C	T	.	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr16	46389541	46389542	chr16:46389542:A:G	rs7195077	A	G	.	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr16	46401662	46401663	chr16:46401663:A:G	rs1455471125	A	G	.	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr16	46829945	46829946	chr16:46829946:G:A	rs140064545	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr16	46829946	46829947	chr16:46829947:T:G	rs986367746	T	G	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr16	48276252	48276253	chr16:48276253:T:C	rs574374603	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr16	48462456	48462457	chr16:48462457:G:A	rs76174447	G	A	.	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr16	48462478	48462479	chr16:48462479:C:T	rs78137297	C	T	.	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr16	48478568	48478569	chr16:48478569:T:C	rs60832811	T	C	t	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr16	48492220	48492221	chr16:48492221:T:C	rs114225900	T	C	t	Sox3.mouse_HMG_3	2	1	+	1.7426827519956094	-4.863196366235322	GATGAATGGTTGCCAGA
chr16	48730659	48730660	chr16:48730660:C:T	rs8055403	C	T	c	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr16	48796584	48796585	chr16:48796585:C:T	rs1420707	C	T	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr16	49005165	49005166	chr16:49005166:T:C	rs1558760	T	C	T	Sox3.mouse_HMG_3	4	1	-	1.4410791812784471	-4.94173754671562	GCTGAATGCTGGTCAGC
chr16	49431545	49431546	chr16:49431546:C:G	rs376473465	C	G	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr16	49607978	49607979	chr16:49607979:T:C	rs529432325	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr16	49742496	49742497	chr16:49742497:A:G	rs7193830	A	G	A	Sox3.mouse_HMG_3	8	1	+	-0.07404962057725561	0.5490670266005575	AATGAAGAACAGTCAGA
chr16	50147207	50147208	chr16:50147208:T:C	rs1043720637	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr16	50147228	50147229	chr16:50147229:A:C	rs140883305	A	C	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr16	50317532	50317533	chr16:50317533:T:C	rs4785407	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr16	50409495	50409496	chr16:50409496:C:T	rs4598913	C	T	C	Sox3.mouse_HMG_3	16	1	+	0.891038266276023	1.7579650057483018	GATGAATGTCTTTGAAC
chr16	50416513	50416514	chr16:50416514:T:A	rs8045296	T	A	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr16	50426202	50426203	chr16:50426203:C:T	rs1872692	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr16	50436851	50436852	chr16:50436852:C:A	rs74017388	C	A	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr16	50769844	50769845	chr16:50769845:G:C	rs1420873	G	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr16	50831637	50831638	chr16:50831638:T:G	rs6500336	T	G	G	Sox3.mouse_HMG_3	15	1	+	1.4292321198590776	-1.6933586912341638	TATGATTTCTAGCCATC
chr16	50843393	50843394	chr16:50843394:A:G	rs7198635	A	G	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr16	50863185	50863186	chr16:50863186:C:T	rs192791036	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr16	50974633	50974634	chr16:50974634:T:C	rs58302873	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr16	51079634	51079635	chr16:51079635:T:G	chr16:51079635:T:G	T	G	T	Sox3.mouse_HMG_3	10	1	-	2.406979806676498	-4.344071678504974	TGTAAATGCCACTCATT
chr16	51218240	51218241	chr16:51218241:G:C	rs8044297	G	C	C	Sox3.mouse_HMG_3	11	1	+	3.066073095622726	-1.5841016301834125	AATGGATTAAAGTCATA
chr16	51386695	51386696	chr16:51386696:T:A	rs1110486	T	A	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr16	51818371	51818372	chr16:51818372:G:A	rs140258373	G	A	g	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr16	51882127	51882128	chr16:51882128:C:T	rs1125428	C	T	C	Sox3.mouse_HMG_3	3	1	-	2.4041440205488858	-3.3774208669803443	TAGGAATTATAATCAAA
chr16	51950233	51950234	chr16:51950234:A:G	rs1071370	A	G	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr16	52142118	52142119	chr16:52142119:G:A	rs149128670	G	A	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr16	52209442	52209443	chr16:52209443:A:C	rs150010244	A	C	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr16	52257091	52257092	chr16:52257092:G:A	rs11649692	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr16	52272001	52272002	chr16:52272002:A:C	rs1362378	A	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr16	52549141	52549142	chr16:52549142:G:T	rs28463809	G	T	G	Sox3.mouse_HMG_3	15	1	+	0.030047180407551055	3.1526379915007925	GATGTACTGCATTCAGC
chr16	52629567	52629568	chr16:52629568:C:T	rs11866716	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr16	52655600	52655601	chr16:52655601:A:G	rs9925027	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr16	53225080	53225081	chr16:53225081:A:G	rs1188906877	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr16	53523809	53523810	chr16:53523810:A:G	rs4783814	A	G	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr16	53756268	53756269	chr16:53756269:C:G	rs1861869	C	G	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr16	53822156	53822157	chr16:53822157:C:G	rs148508872	C	G	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr16	53822191	53822192	chr16:53822192:C:T	rs75929173	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr16	53837990	53837991	chr16:53837991:A:C	rs17818920	A	C	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr16	53971879	53971880	chr16:53971880:A:G	rs79684629	A	G	A	Sox3.mouse_HMG_3	10	1	+	5.217143245752978	-1.39080739578782	TATGAAATGCAGTCACA
chr16	54029220	54029221	chr16:54029221:T:C	rs75928240	T	C	.	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr16	54096257	54096258	chr16:54096258:G:T	rs16953047	G	T	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr16	54174943	54174944	chr16:54174944:A:C	rs2689258	A	C	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr16	54266402	54266403	chr16:54266403:G:A	rs144582661	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr16	54503966	54503967	chr16:54503967:C:T	rs147233517	C	T	C	Sox3.mouse_HMG_3	3	1	-	4.480151424417903	-1.301413463111326	CAAGTATGTTATTCATA
chr16	54743058	54743059	chr16:54743059:G:A	rs57104572	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr16	54796062	54796063	chr16:54796063:C:A	rs4591143	C	A	C	Sox3.mouse_HMG_3	11	1	-	6.517384502194336	7.951820602490143	TTTGAACTACAGTCATG
chr16	55152068	55152069	chr16:55152069:A:T	rs75631051	A	T	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr16	55222381	55222382	chr16:55222382:A:G	rs7191847	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr16	55298182	55298183	chr16:55298183:C:T	rs39877	C	T	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr16	55369585	55369586	chr16:55369586:T:G	rs360770	T	G	G	Sox3.mouse_HMG_3	2	1	+	3.549997711164215	-3.198982250707389	CATAAAATATATTCATG
chr16	55645771	55645772	chr16:55645772:G:T	rs72817528	G	T	G	Sox3.mouse_HMG_3	0	1	+	1.3936584387799413	1.1247375849801882	GGAGAAAGGCATTCAAA
chr16	55774124	55774125	chr16:55774125:C:T	rs3743789	C	T	-	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr16	55781609	55781610	chr16:55781610:T:G	rs28409947	T	G	T	Sox3.mouse_HMG_3	14	1	-	3.99654685620617	-2.3853993102207407	AGTGAATGGTATTGACA
chr16	55866402	55866403	chr16:55866403:G:A	rs6499795	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr16	55866454	55866455	chr16:55866455:G:T	rs7187404	G	T	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr16	55900246	55900247	chr16:55900247:G:A	rs13339005	G	A	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr16	55946068	55946069	chr16:55946069:C:T	rs6499810	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr16	56015024	56015025	chr16:56015025:C:T	rs8052802	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr16	56041317	56041318	chr16:56041318:C:T	rs7196109	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr16	56197131	56197132	chr16:56197132:T:A	rs1190766	T	A	T	Sox3.mouse_HMG_3	5	1	-	0.8264327414161098	-5.781007923062601	CATTAATGCCTGTCATT
chr16	56212257	56212258	chr16:56212258:C:T	rs11647381	C	T	C	Sox3.mouse_HMG_3	13	1	+	8.920964257687071	2.313703647225053	ATTGAATGCCATACATG
chr16	56212279	56212280	chr16:56212280:G:T	rs11647097	G	T	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr16	56354980	56354981	chr16:56354981:C:T	rs116862304	C	T	c	Sox3.mouse_HMG_3	7	1	-	-0.09076114858810924	-6.644309863245837	CCTGGATGTTATTCGTG
chr16	56460331	56460332	chr16:56460332:A:G	rs185266415	A	G	A	Sox3.mouse_HMG_3	0	1	-	8.153976955437589	6.699106310100723	TGTTAATTGTATTCATG
chr16	56542642	56542643	chr16:56542643:T:C	rs417053	T	C	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr16	56639230	56639231	chr16:56639231:A:G	rs11076160	A	G	.	Sox3.mouse_HMG_3	11	1	-	4.527863851738677	-1.5567469743632678	AGTGAATTTTATACAGA
chr16	56639235	56639236	chr16:56639236:A:G	rs11076161	A	G	.	Sox3.mouse_HMG_3	6	1	-	4.527863851738677	-2.0800867898021203	AGTGAATTTTATACAGA
chr16	56673054	56673055	chr16:56673055:A:G	rs1809902	A	G	.	Sox3.mouse_HMG_3	6	1	-	2.396216530389392	-4.211734111151408	CAGAAATGGCAGTCATT
chr16	56939422	56939423	chr16:56939423:A:G	rs2133783	A	G	G	Sox3.mouse_HMG_3	14	1	+	0.8573724497393038	-5.524573716687607	AGGGAATTTTATCCATG
chr16	56957611	56957612	chr16:56957612:G:A	rs6499862	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr16	56991258	56991259	chr16:56991259:T:C	rs7205459	T	C	N	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr16	57001462	57001463	chr16:57001463:T:C	rs821466	T	C	t	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr16	57137320	57137321	chr16:57137321:C:G	rs2305693	C	G	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr16	57138160	57138161	chr16:57138161:A:G	rs760313426	A	G	A	Sox3.mouse_HMG_3	7	1	-	1.8094471182724627	-3.593964061704856	AAGGAATTGGAGTCAAG
chr16	57148355	57148356	chr16:57148356:A:G	rs78023591	A	G	A	Sox3.mouse_HMG_3	15	1	-	0.5520558140633969	-4.162337597651671	CATTCATTCTATTCATC
chr16	57186255	57186256	chr16:57186256:G:C	rs1409940692	G	C	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr16	57565065	57565066	chr16:57565066:C:T	rs78040384	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr16	57584818	57584819	chr16:57584819:A:C	rs7204127	A	C	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr16	57584819	57584820	chr16:57584820:G:A	rs34290112	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr16	57610423	57610424	chr16:57610424:T:C	rs16958270	T	C	T	Sox3.mouse_HMG_3	2	1	+	4.46403822357912	-2.141840894651809	TTTGTATTACAGTCATC
chr16	57655892	57655893	chr16:57655893:A:C	rs1801255	A	C	A	Sox3.mouse_HMG_3	15	1	+	0.6368835391100343	-1.813700408368213	CAAGAATTCCAGCCAAG
chr16	57681297	57681298	chr16:57681298:C:T	rs56414425	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr16	57695518	57695519	chr16:57695519:A:G	rs7204155	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr16	57736653	57736654	chr16:57736654:G:A	rs575720070	G	A	g	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr16	57736653	57736654	chr16:57736654:G:T	chr16:57736654:G:T	G	T	g	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr16	57822843	57822844	chr16:57822844:G:A	rs11865054	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr16	57880900	57880901	chr16:57880901:A:G	rs11642564	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr16	57949806	57949807	chr16:57949807:C:T	rs152142	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr16	58128498	58128499	chr16:58128499:A:G	rs112501441	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr16	58257312	58257313	chr16:58257313:A:G	rs2550337	A	G	-	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr16	58630285	58630286	chr16:58630286:C:T	rs567692298	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr16	58729925	58729926	chr16:58729926:T:A	rs1424245	T	A	t	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr16	58729926	58729927	chr16:58729927:T:A	rs1436429	T	A	t	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr16	58969106	58969107	chr16:58969107:G:A	rs7194392	G	A	G	Sox3.mouse_HMG_3	0	1	-	0.8186775846651015	2.2735482300019667	CTTGAATTCCAATCTTG
chr16	59170393	59170394	chr16:59170394:A:G	rs9941209	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr16	59170448	59170449	chr16:59170449:C:A	rs7203243	C	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr16	59543796	59543797	chr16:59543797:A:C	rs62057574	A	C	A	Sox3.mouse_HMG_3	10	1	+	1.0403342098546262	-5.710717275326846	TTTGATTCTTAGTCATG
chr16	60581693	60581694	chr16:60581694:C:T	rs1347531	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr16	60612198	60612199	chr16:60612199:A:G	rs2043592	A	G	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr16	60727823	60727824	chr16:60727824:T:G	rs16962511	T	G	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr16	60756183	60756184	chr16:60756184:T:G	rs35448966	T	G	T	Sox3.mouse_HMG_3	11	1	+	1.9459962586934754	0.5115601583976688	AATGTAATGTATTCAAA
chr16	60815269	60815270	chr16:60815270:A:T	rs62045415	A	T	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr16	61945944	61945945	chr16:61945945:C:T	rs9936428	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr16	62018854	62018855	chr16:62018855:G:A	rs16964185	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr16	62200105	62200106	chr16:62200106:G:A	rs11645328	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr16	62596982	62596983	chr16:62596983:A:G	rs1040586241	A	G	A	Sox3.mouse_HMG_3	12	1	-	1.074795506804707	-5.118058060596059	TTAGAATTCCCTTCATT
chr16	62642855	62642856	chr16:62642856:C:T	rs288614	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr16	62882527	62882528	chr16:62882528:T:A	rs11646827	T	A	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr16	62922805	62922806	chr16:62922806:G:A	rs17353691	G	A	G	Sox3.mouse_HMG_3	0	1	+	4.705937934954229	3.880654033807886	GATGAATGCTTTCCATT
chr16	62960278	62960279	chr16:62960279:A:G	rs43172	A	G	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr16	63143994	63143995	chr16:63143995:G:A	rs9302551	G	A	G	Sox3.mouse_HMG_3	16	1	-	1.1879336900754809	2.0548604295477597	AATTAATTTTCTTCATC
chr16	63596255	63596256	chr16:63596256:G:T	rs1895512	G	T	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr16	63749651	63749652	chr16:63749652:T:C	rs12103381	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr16	63851835	63851836	chr16:63851836:G:A	rs4949082	G	A	G	Sox3.mouse_HMG_3	11	1	+	1.5104584216575165	-3.139716304148621	GATGAAAGTCAGTGAAG
chr16	64093146	64093147	chr16:64093147:C:T	rs10500490	C	T	T	Sox3.mouse_HMG_3	11	1	-	0.4695267242621095	-4.1806480015440295	GTTTCATGTCAGTCATA
chr16	64236591	64236592	chr16:64236592:C:T	rs76584084	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr16	64325444	64325445	chr16:64325445:G:A	rs12920359	G	A	a	Sox3.mouse_HMG_3	6	1	-	2.67050562833663	9.278456269877429	GAGGAACGACAGTCATT
chr16	64474858	64474859	chr16:64474859:G:A	rs72784827	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr16	64853686	64853687	chr16:64853687:A:G	rs59321372	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr16	64983773	64983774	chr16:64983774:T:C	rs974602387	T	C	T	Sox3.mouse_HMG_3	15	1	+	4.438973595309113	-0.27541981640595514	AAGGAATGATATTTATA
chr16	64983788	64983789	chr16:64983789:A:G	rs35207	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr16	65106961	65106962	chr16:65106962:T:C	rs970118705	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr16	65124979	65124980	chr16:65124980:A:G	rs7196224	A	G	A	Sox3.mouse_HMG_3	2	1	-	1.3449878260063353	-5.260891292224596	TTTGAAGTTCATTCGTG
chr16	65404682	65404683	chr16:65404683:G:C	rs138892820	G	C	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr16	65480473	65480474	chr16:65480474:G:A	rs1423831	G	A	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr16	65500410	65500411	chr16:65500411:G:C	rs9923227	G	C	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr16	65572135	65572136	chr16:65572136:A:T	rs4583239	A	T	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr16	65572188	65572189	chr16:65572189:C:T	rs974799454	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr16	65733949	65733950	chr16:65733950:A:G	rs12919399	A	G	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr16	65761299	65761300	chr16:65761300:G:A	rs8044962	G	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr16	65863648	65863649	chr16:65863649:G:C	rs1126254	G	C	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr16	65994840	65994841	chr16:65994841:G:A	rs9924023	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr16	66058654	66058655	chr16:66058655:G:A	rs1121926	G	A	A	Sox3.mouse_HMG_3	15	1	+	1.1644444586712293	2.02322580552765	AATCAAGGACATTCAGA
chr16	66326914	66326915	chr16:66326915:T:C	rs233557	T	C	c	Sox3.mouse_HMG_3	14	1	-	-0.44027732040060985	-6.8222234868275216	GAAGTATTCCACTCATG
chr16	66326925	66326926	chr16:66326926:C:T	rs2344574	C	T	C	Sox3.mouse_HMG_3	3	1	-	-0.44027732040060985	-6.221842207929844	GAAGTATTCCACTCATG
chr16	66422990	66422991	chr16:66422991:C:T	rs11643524	C	T	C	Sox3.mouse_HMG_3	0	1	-	3.241394314432937	2.4161104132865923	GATGAATGGGATGCAGT
chr16	66424739	66424740	chr16:66424740:G:T	rs34695237	G	T	G	Sox3.mouse_HMG_3	6	1	+	2.96559455309848	9.71664603827995	CATAAAGGATAGTCATG
chr16	66581141	66581142	chr16:66581142:A:G	rs16956795	A	G	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr16	66620058	66620059	chr16:66620059:A:C	rs355945	A	C	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr16	66620061	66620062	chr16:66620062:T:G	rs75901413	T	G	T	Sox3.mouse_HMG_3	2	1	+	0.3890073514591992	-6.359972610412406	CCTGAATGGTGTTCTTG
chr16	66726072	66726073	chr16:66726073:C:T	rs2305310	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr16	66832779	66832780	chr16:66832780:C:T	rs62057887	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr16	67346646	67346647	chr16:67346647:T:C	rs7184253	T	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr16	67356544	67356545	chr16:67356545:A:G	rs11859352	A	G	a	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr16	67775366	67775367	chr16:67775367:G:A	rs78026795	G	A	G	Sox3.mouse_HMG_3	13	1	-	1.4602951977664693	-5.14696541269555	GATGAAAGGCTTTCAGT
chr16	68147225	68147226	chr16:68147226:T:G	rs74327209	T	G	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr16	68548957	68548958	chr16:68548958:A:G	rs12921494	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr16	68675880	68675881	chr16:68675881:G:C	rs7194089	G	C	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr16	68796607	68796608	chr16:68796608:A:T	rs17715799	A	T	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr16	68805398	68805399	chr16:68805399:T:C	rs10431924	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr16	68929956	68929957	chr16:68929957:T:G	rs188630328	T	G	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr16	69101145	69101146	chr16:69101146:C:A	rs8047014	C	A	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr16	69277065	69277066	chr16:69277066:C:T	rs374779565	C	T	C	Sox3.mouse_HMG_3	1	1	+	1.0814818693957489	2.2882645750625494	GCTGAACTCCATACATG
chr16	69480111	69480112	chr16:69480112:A:G	rs72797197	A	G	g	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr16	69525792	69525793	chr16:69525793:C:T	rs4783720	C	T	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr16	69651110	69651111	chr16:69651111:A:G	rs10500553	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr16	69687470	69687471	chr16:69687471:T:C	rs9888993	T	C	T	Sox3.mouse_HMG_3	10	1	-	1.1107347851812839	-5.497215856359515	GGTTAATTTTATTTATG
chr16	69844257	69844258	chr16:69844258:A:G	rs3790088	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr16	69895233	69895234	chr16:69895234:G:A	rs7200005	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr16	69925319	69925320	chr16:69925320:G:A	rs2270838	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr16	70200201	70200202	chr16:70200202:C:T	rs187870462	C	T	-	Sox3.mouse_HMG_3	5	1	-	4.46914494740634	10.957979869477207	AATGAGTGGAAGTCATG
chr16	70591300	70591301	chr16:70591301:G:A	rs55638004	G	A	G	Sox3.mouse_HMG_3	0	1	-	4.199523100949177	5.654393746286042	CAGGAATGGTATTTATG
chr16	70645627	70645628	chr16:70645628:T:A	rs12924304	T	A	T	Sox3.mouse_HMG_3	7	1	+	1.8042837688859508	-3.899232003541705	TTTGAATTCCTGTCACA
chr16	70647587	70647588	chr16:70647588:C:T	rs11865804	C	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr16	70772770	70772771	chr16:70772771:T:C	rs4985364	T	C	C	Sox3.mouse_HMG_3	10	1	-	1.9485860376622253	-4.659364603878572	CATGATTGATATACAAG
chr16	71342967	71342968	chr16:71342968:C:T	rs66476009	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr16	71707852	71707853	chr16:71707853:T:C	rs556235739	T	C	T	Sox3.mouse_HMG_3	2	1	+	0.25870437586783734	-6.347174742363094	TCTGAAGGGCAGTCTTG
chr16	72112015	72112016	chr16:72112016:G:A	rs74027820	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr16	72125427	72125428	chr16:72125428:C:T	rs9921752	C	T	C	Sox3.mouse_HMG_3	2	1	+	1.3220205241736986	7.927899642404629	GACGAATGGCTGTCAGA
chr16	72125444	72125445	chr16:72125445:C:T	rs181635047	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr16	72190290	72190291	chr16:72190291:C:T	rs149049011	C	T	C	Sox3.mouse_HMG_3	10	1	-	4.360052536191163	10.968003177731962	GAGGAATTTCGTTCATG
chr16	72665538	72665539	chr16:72665539:T:G	rs777683990	T	G	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr16	72909155	72909156	chr16:72909156:T:C	rs12931840	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr16	72988597	72988598	chr16:72988598:A:C	rs11862771	A	C	C	Sox3.mouse_HMG_3	6	1	-	4.976540537989045	-1.7745109471924252	ATTGAATTCCAATCAGG
chr16	72988604	72988605	chr16:72988605:T:C	rs4541098	T	C	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr16	73032794	73032795	chr16:73032795:A:G	rs11075961	A	G	G	Sox3.mouse_HMG_3	1	1	+	2.893568018573493	-0.2065619178637984	GATGGAGGACAGTCATT
chr16	73102894	73102895	chr16:73102895:T:C	rs62052382	T	C	T	Sox3.mouse_HMG_3	15	1	+	6.5399221509341885	1.8255287392191204	AGTGAATGGTAGCCATT
chr16	73123805	73123806	chr16:73123806:T:C	rs56010482	T	C	T	Sox3.mouse_HMG_3	15	1	+	1.9467276489586525	-2.767665762756416	CCTGAATGGGACTCATG
chr16	73144703	73144704	chr16:73144704:A:G	rs77172764	A	G	A	Sox3.mouse_HMG_3	1	1	-	6.787217771741739	5.580435066074939	GTTGAATATTATTCAAG
chr16	73384088	73384089	chr16:73384089:C:A	rs34948512	C	A	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr16	73463504	73463505	chr16:73463505:T:C	rs1345871	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr16	74025171	74025172	chr16:74025172:G:C	rs2716587	G	C	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr16	74073301	74073302	chr16:74073302:A:G	rs12149894	A	G	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr16	74193343	74193344	chr16:74193344:T:C	rs807291	T	C	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr16	74501004	74501005	chr16:74501005:C:T	rs7190577	C	T	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr16	74522159	74522160	chr16:74522160:G:C	rs7188197	G	C	G	Sox3.mouse_HMG_3	8	1	-	2.463782297625101	2.906564966303035	TTTGAATTCTATTAACT
chr16	74581291	74581292	chr16:74581292:A:G	rs8055803	A	G	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr16	74594731	74594732	chr16:74594732:G:T	rs7193508	G	T	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr16	74674148	74674149	chr16:74674149:T:A	rs75981157	T	A	T	Sox3.mouse_HMG_3	10	1	-	7.9664941683414	1.2154426831599285	AAAGAATGCTATTCAAC
chr16	74709477	74709478	chr16:74709478:T:A	chr16:74709478:T:A	T	A	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr16	74709507	74709508	chr16:74709508:T:C	rs73614628	T	C	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr16	74859904	74859905	chr16:74859905:G:A	rs8048825	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr16	74859913	74859914	chr16:74859914:T:C	rs8055079	T	C	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr16	75312889	75312890	chr16:75312890:C:G	rs1862705	C	G	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr16	75401898	75401899	chr16:75401899:C:T	rs12051159	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr16	75574209	75574210	chr16:75574210:G:C	rs60393074	G	C	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr16	75764480	75764481	chr16:75764481:C:T	rs16943291	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr16	75862729	75862730	chr16:75862730:T:G	rs62051619	T	G	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr16	75966281	75966282	chr16:75966282:C:T	rs12928535	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr16	75966313	75966314	chr16:75966314:T:C	rs12448826	T	C	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr16	76176472	76176473	chr16:76176473:T:C	rs75269534	T	C	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr16	76345455	76345456	chr16:76345456:T:C	rs62049729	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr16	76351861	76351862	chr16:76351862:T:C	rs17766704	T	C	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr16	76490651	76490652	chr16:76490652:A:G	rs8043773	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr16	76926718	76926719	chr16:76926719:G:A	rs4888576	G	A	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr16	76931291	76931292	chr16:76931292:A:G	rs34543814	A	G	a	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr16	76977031	76977032	chr16:76977032:T:C	rs35127222	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr16	77074238	77074239	chr16:77074239:G:A	rs73633216	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr16	77099067	77099068	chr16:77099068:G:A	rs284988	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.9560028789018025	-3.8255620086274282	GATGAATTATACTGAGA
chr16	77170165	77170166	chr16:77170166:G:A	rs7499356	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr16	77221243	77221244	chr16:77221244:G:A	rs7191625	G	A	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr16	77236516	77236517	chr16:77236517:G:A	rs59411109	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr16	77344438	77344439	chr16:77344439:T:C	rs114722999	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr16	77424879	77424880	chr16:77424880:C:T	rs78868769	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr16	77424939	77424940	chr16:77424940:C:G	rs12446009	C	G	C	Sox3.mouse_HMG_3	2	1	+	0.892419758507113	0.7493189148664396	GACGAAGGTCATTCAAC
chr16	77510507	77510508	chr16:77510508:G:A	rs16945803	G	A	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr16	77539564	77539565	chr16:77539565:A:G	rs1841799	A	G	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr16	77544417	77544418	chr16:77544418:T:A	rs176091	T	A	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr16	77557918	77557919	chr16:77557919:T:G	rs282994	T	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr16	77569578	77569579	chr16:77569579:T:A	rs416441	T	A	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr16	77571547	77571548	chr16:77571548:G:A	rs9926916	G	A	g	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr16	77714635	77714636	chr16:77714636:G:A	rs35764726	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr16	77714654	77714655	chr16:77714655:C:A	rs79236761	C	A	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr16	77748777	77748778	chr16:77748778:G:A	rs4888669	G	A	G	Sox3.mouse_HMG_3	3	1	+	3.1742984287831026	-2.6072664587461274	AATGAAAGTCAGTCGTG
chr16	77782306	77782307	chr16:77782307:G:A	rs4888684	G	A	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr16	77791550	77791551	chr16:77791551:A:C	rs2966072	A	C	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr16	77840869	77840870	chr16:77840870:T:G	rs181870682	T	G	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr16	77896826	77896827	chr16:77896827:G:A	rs1259877057	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr16	78054206	78054207	chr16:78054207:C:T	rs73574780	C	T	c	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr16	78094416	78094417	chr16:78094417:A:G	rs1073111	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr16	78118799	78118800	chr16:78118800:T:C	rs11645921	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr16	78125134	78125135	chr16:78125135:G:A	rs1076514	G	A	A	Sox3.mouse_HMG_3	0	1	+	1.578050366437437	0.7527664652910926	GTTGTATTACATTGATA
chr16	78209486	78209487	chr16:78209487:C:T	rs7500549	C	T	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr16	78291292	78291293	chr16:78291293:C:T	rs530800523	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr16	78300642	78300643	chr16:78300643:A:G	rs78308730	A	G	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr16	78322423	78322424	chr16:78322424:G:A	rs12932345	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr16	78385465	78385466	chr16:78385466:T:C	rs147063058	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr16	78387085	78387086	chr16:78387086:G:A	rs61054844	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr16	78421327	78421328	chr16:78421328:A:G	rs6564543	A	G	a	Sox3.mouse_HMG_3	2	1	-	1.7470950662217961	-4.858784052009136	GGTGGCTGGCAGTCATG
chr16	78421328	78421329	chr16:78421329:C:T	rs6564544	C	T	T	Sox3.mouse_HMG_3	1	1	-	1.7470950662217961	4.847225002659089	GGTGGCTGGCAGTCATG
chr16	78421580	78421581	chr16:78421581:A:G	rs6564548	A	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr16	78434318	78434319	chr16:78434319:C:T	rs28463484	C	T	C	Sox3.mouse_HMG_3	1	1	-	1.1595238773611567	4.259653813798447	GGTAAGTTTCATTCATT
chr16	78434320	78434321	chr16:78434321:T:G	rs28609420	T	G	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr16	78505217	78505218	chr16:78505218:G:C	rs8064066	G	C	C	Sox3.mouse_HMG_3	14	1	+	2.641042412158915	2.641042412158915	AATGAATTCTAATCGTC
chr16	78544318	78544319	chr16:78544319:A:T	rs11643254	A	T	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr16	78551776	78551777	chr16:78551777:C:G	rs17639961	C	G	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr16	78624480	78624481	chr16:78624481:A:G	rs16948211	A	G	A	Sox3.mouse_HMG_3	10	1	-	2.8716194023696646	2.8716194023696646	TTTGAATGGTTTTCTTA
chr16	78624495	78624496	chr16:78624496:T:G	rs2548861	T	G	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr16	78683691	78683692	chr16:78683692:A:G	rs7193282	A	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr16	78773336	78773337	chr16:78773337:G:A	rs7199334	G	A	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr16	78878172	78878173	chr16:78878173:C:A	rs2656628	C	A	c	Sox3.mouse_HMG_3	4	1	+	4.786780670672967	11.537322178792351	GCTGCATGCTATTCAGG
chr16	78962456	78962457	chr16:78962457:G:A	rs79253924	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.171848042746742	-4.60971684478249	CAGGGATGACAGTCATT
chr16	79008103	79008104	chr16:79008104:A:G	rs28445852	A	G	G	Sox3.mouse_HMG_3	15	1	-	4.1349278883943725	-0.5794655233206956	AATGAATTCTGTTAATA
chr16	79008104	79008105	chr16:79008105:T:C	rs12932061	T	C	T	Sox3.mouse_HMG_3	14	1	-	4.1349278883943725	-2.247018278032538	AATGAATTCTGTTAATA
chr16	79041088	79041089	chr16:79041089:A:G	rs16949364	A	G	A	Sox3.mouse_HMG_3	11	1	-	2.798220031884492	-3.2863907942174535	AATGAATTACATGTATT
chr16	79060336	79060337	chr16:79060337:G:C	rs11646307	G	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr16	79061047	79061048	chr16:79061048:C:T	rs9972825	C	T	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr16	79077399	79077400	chr16:79077400:T:C	rs12925972	T	C	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr16	79133411	79133412	chr16:79133412:T:G	rs12716869	T	G	T	Sox3.mouse_HMG_3	14	1	-	4.7367381787295155	-1.645207987697396	TATGAATGTGTGTCATA
chr16	79173023	79173024	chr16:79173024:A:G	rs35506727	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr16	79265144	79265145	chr16:79265145:G:A	rs270433	G	A	G	Sox3.mouse_HMG_3	8	1	-	3.939117708432594	3.6769979635164884	AATGACTTCCATTTATG
chr16	79272684	79272685	chr16:79272685:T:C	rs182644487	T	C	T	Sox3.mouse_HMG_3	11	1	+	0.05924650326489933	-6.025364322837046	AGTTAAAGCCATTCATT
chr16	79272699	79272700	chr16:79272700:G:A	rs8045495	G	A	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr16	79483729	79483730	chr16:79483730:T:C	rs4556799	T	C	T	Sox3.mouse_HMG_3	15	1	+	0.6361669140228252	-4.078226497692243	GCTGTATGGCAGGCATA
chr16	79591669	79591670	chr16:79591670:C:G	rs28461478	C	G	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr16	79595583	79595584	chr16:79595584:A:G	rs78971625	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr16	79602164	79602165	chr16:79602165:T:C	rs77596040	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr16	79632349	79632350	chr16:79632350:C:T	rs78488228	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr16	79632361	79632362	chr16:79632362:C:G	rs571524136	C	G	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr16	79632382	79632383	chr16:79632383:T:C	rs74039615	T	C	T	Sox3.mouse_HMG_3	1	1	-	0.0602091391100803	-3.0399207973272127	AATGAATGCTTGTGAGA
chr16	79656470	79656471	chr16:79656471:T:A	rs11150185	T	A	A	Sox3.mouse_HMG_3	2	1	+	0.01576716123733557	-5.711561553102286	AATGAAGGTCAGTCTGA
chr16	79800427	79800428	chr16:79800428:A:C	chr16:79800428:A:C	A	C	A	Sox3.mouse_HMG_3	2	1	-	2.6481507262260444	-4.100829235645557	GGTGAGTTGCAGTCACA
chr16	79849270	79849271	chr16:79849271:C:T	rs568912296	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr16	79849281	79849282	chr16:79849282:C:T	rs142842718	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr16	79898320	79898321	chr16:79898321:G:A	rs4548890	G	A	A	Sox3.mouse_HMG_3	3	1	+	2.2278367311261236	-3.553728156403108	AGTGAATGATAATAATA
chr16	79936519	79936520	chr16:79936520:G:A	rs4573937	G	A	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr16	79936531	79936532	chr16:79936532:A:G	rs4405564	A	G	A	Sox3.mouse_HMG_3	5	1	+	8.481581468783093	1.992746546712229	GATGAATTTCATACAGG
chr16	80015921	80015922	chr16:80015922:G:A	rs751133404	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr16	80024143	80024144	chr16:80024144:C:G	rs4889067	C	G	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr16	80065341	80065342	chr16:80065342:T:G	rs4889090	T	G	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr16	80065502	80065503	chr16:80065503:C:T	rs60431368	C	T	C	Sox3.mouse_HMG_3	16	1	-	0.989218101392535	0.9532776449400093	CGTGAAAGACACTCATG
chr16	80259399	80259400	chr16:80259400:G:T	rs143826292	G	T	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr16	80259419	80259420	chr16:80259420:A:G	rs8043806	A	G	A	Sox3.mouse_HMG_3	6	1	-	0.6667963988273002	-5.941154242713499	GCAGATTGACAGTCATA
chr16	80267912	80267913	chr16:80267913:A:G	rs9940611	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr16	80299644	80299645	chr16:80299645:C:G	rs1094134	C	G	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr16	80299692	80299693	chr16:80299693:G:A	rs11646502	G	A	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr16	80307455	80307456	chr16:80307456:C:T	rs72816456	C	T	C	Sox3.mouse_HMG_3	8	1	-	5.159301498299804	4.536184851121991	CATAAATGGCATTGATG
chr16	80411336	80411337	chr16:80411337:G:A	rs66836864	G	A	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr16	80411383	80411384	chr16:80411384:G:A	rs146941926	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr16	80526710	80526711	chr16:80526711:C:G	rs4888093	C	G	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr16	80526761	80526762	chr16:80526762:T:C	rs75740027	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr16	80567220	80567221	chr16:80567221:G:T	rs966670	G	T	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr16	80613869	80613870	chr16:80613870:A:G	rs115817774	A	G	-	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr16	80628026	80628027	chr16:80628027:T:C	rs12933466	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr16	80650822	80650823	chr16:80650823:A:G	rs12920375	A	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr16	80667585	80667586	chr16:80667586:G:A	rs72806166	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr16	80712267	80712268	chr16:80712268:T:C	rs62051679	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr16	80875048	80875049	chr16:80875049:C:T	chr16:80875049:C:T	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr16	80917740	80917741	chr16:80917741:A:G	rs8062598	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr16	80932929	80932930	chr16:80932930:C:T	rs77287213	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr16	80932946	80932947	chr16:80932947:A:G	rs7199497	A	G	A	Sox3.mouse_HMG_3	16	1	+	1.050364727474269	1.0863051839267945	GGTGAACGCTGGTCATA
chr16	80971835	80971836	chr16:80971836:T:A	rs13332890	T	A	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr16	81136387	81136388	chr16:81136388:C:G	rs12934839	C	G	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr16	81280775	81280776	chr16:81280776:T:C	rs7188650	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr16	81311340	81311341	chr16:81311341:T:C	rs12924233	T	C	C	Sox3.mouse_HMG_3	0	1	+	4.207775548266557	2.7529049029296933	TGTGAATTCCACTCAAC
chr16	81394829	81394830	chr16:81394830:C:A	rs12935010	C	A	C	Sox3.mouse_HMG_3	13	1	+	7.298769913855822	0.9161332398784467	TCTGAATTAAATTCATG
chr16	81508926	81508927	chr16:81508927:C:A	rs62046584	C	A	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr16	81670255	81670256	chr16:81670256:G:A	rs11150398	G	A	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr16	81786440	81786441	chr16:81786441:C:G	rs536930702	C	G	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr16	81791401	81791402	chr16:81791402:T:A	rs140879259	T	A	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr16	81818483	81818484	chr16:81818484:G:C	rs79159225	G	C	G	Sox3.mouse_HMG_3	3	1	+	7.2932034682082385	0.5437127325031876	GGTGAATGCCATTCTTC
chr16	81823201	81823202	chr16:81823202:G:T	rs116142376	G	T	G	Sox3.mouse_HMG_3	15	1	+	0.9861336897155465	4.108724500808788	GATGGATTGTTTTCAGT
chr16	81829065	81829066	chr16:81829066:A:G	rs8057305	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr16	81843559	81843560	chr16:81843560:G:A	rs74029252	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr16	81899754	81899755	chr16:81899755:A:T	rs9930679	A	T	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr16	81907554	81907555	chr16:81907555:A:G	rs41301803	A	G	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr16	81936747	81936748	chr16:81936748:G:A	rs16956011	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr16	81936753	81936754	chr16:81936754:A:G	rs3934954	A	G	A	Sox3.mouse_HMG_3	15	1	-	0.5564645933517971	-4.157928818363271	TGTGTATGTTAGTTATG
chr16	81936760	81936761	chr16:81936761:A:C	rs3934955	A	C	A	Sox3.mouse_HMG_3	8	1	-	0.5564645933517971	1.261367006945835	TGTGTATGTTAGTTATG
chr16	81938364	81938365	chr16:81938365:G:A	rs4888191	G	A	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr16	82061971	82061972	chr16:82061972:T:G	rs61537150	T	G	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr16	82085598	82085599	chr16:82085599:T:G	rs723013	T	G	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr16	82202224	82202225	chr16:82202225:G:A	rs76914972	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr16	82202254	82202255	chr16:82202255:A:T	rs17233233	A	T	A	Sox3.mouse_HMG_3	10	1	+	2.681968605815523	-4.069082879365947	AATAAATTTTATTCTTC
chr16	82258095	82258096	chr16:82258096:A:G	rs62038293	A	G	g	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr16	82262406	82262407	chr16:82262407:C:T	rs6565010	C	T	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr16	82281254	82281255	chr16:82281255:T:G	rs1986893	T	G	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr16	82456940	82456941	chr16:82456941:G:A	rs1025528	G	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr16	82456979	82456980	chr16:82456980:T:C	rs17239924	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr16	82461970	82461971	chr16:82461971:G:C	rs72828336	G	C	G	Sox3.mouse_HMG_3	3	1	+	4.615943372092445	-2.133547363612605	AATGAATGATGTTTATG
chr16	82660469	82660470	chr16:82660470:G:T	rs895127026	G	T	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr16	82831174	82831175	chr16:82831175:A:G	rs1982608	A	G	G	Sox3.mouse_HMG_3	1	1	+	0.9513001608240672	-2.148829775613225	GATGATTTGCATACACA
chr16	82831208	82831209	chr16:82831209:T:C	rs1982609	T	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr16	82834532	82834533	chr16:82834533:A:G	rs2615127	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr16	83070693	83070694	chr16:83070694:T:C	rs4783320	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr16	83070701	83070702	chr16:83070702:A:C	rs8063680	A	C	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr16	83116147	83116148	chr16:83116148:C:G	rs4077666	C	G	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr16	83116150	83116151	chr16:83116151:A:G	rs57128975	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr16	83146608	83146609	chr16:83146609:A:C	rs8053417	A	C	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr16	83346523	83346524	chr16:83346524:G:A	rs113334191	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr16	83358687	83358688	chr16:83358688:A:G	rs17284265	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr16	83420391	83420392	chr16:83420392:G:A	chr16:83420392:G:A	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr16	83441554	83441555	chr16:83441555:A:G	rs11646905	A	G	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr16	83458514	83458515	chr16:83458515:A:G	rs62040122	A	G	a	Sox3.mouse_HMG_3	14	1	-	1.5384670961101188	1.5384670961101188	GATGAACTCCATTCTAT
chr16	83458528	83458529	chr16:83458529:C:G	rs71402079	C	G	c	Sox3.mouse_HMG_3	0	1	-	1.5384670961101188	-0.18532440302649988	GATGAACTCCATTCTAT
chr16	83465044	83465045	chr16:83465045:T:C	rs8050667	T	C	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr16	83513121	83513122	chr16:83513122:A:G	rs77607480	A	G	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr16	83576748	83576749	chr16:83576749:G:C	rs6563938	G	C	C	Sox3.mouse_HMG_3	16	1	+	1.34506996909021	-0.7087862865870909	TTTGACTTACATTTATG
chr16	83593214	83593215	chr16:83593215:C:T	rs9930727	C	T	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr16	83672043	83672044	chr16:83672044:T:A	rs8046499	T	A	T	Sox3.mouse_HMG_3	6	1	+	5.036830427569752	-1.7142210576117174	GATCAATTGTATTTATA
chr16	83826023	83826024	chr16:83826024:A:G	rs12162010	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr16	83983256	83983257	chr16:83983257:T:C	rs112478588	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr16	84036537	84036538	chr16:84036538:C:G	rs8053253	C	G	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr16	84065651	84065652	chr16:84065652:A:C	rs80053280	A	C	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr16	84177305	84177306	chr16:84177306:C:T	rs4150192	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr16	84177310	84177311	chr16:84177311:T:C	rs62049869	T	C	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr16	84177329	84177330	chr16:84177330:C:T	rs889655	C	T	T	Sox3.mouse_HMG_3	9	1	+	-0.32327827412963894	-0.31564159713789297	GCTGGAATGCAGTCATG
chr16	84280380	84280381	chr16:84280381:C:T	rs244868	C	T	c	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr16	84281951	84281952	chr16:84281952:C:G	rs16963269	C	G	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr16	84336471	84336472	chr16:84336472:G:A	rs7187308	G	A	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr16	84360331	84360332	chr16:84360332:G:A	rs62048772	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr16	84362667	84362668	chr16:84362668:C:T	rs11640169	C	T	C	Sox3.mouse_HMG_3	12	1	-	4.3566814670869025	4.624945453681582	GCTGAATGACAGGCAAA
chr16	84406218	84406219	chr16:84406219:C:G	rs766065257	C	G	.	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr16	84406596	84406597	chr16:84406597:T:C	rs1262943584	T	C	.	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr16	84464265	84464266	chr16:84464266:G:T	rs3859034	G	T	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr16	84464317	84464318	chr16:84464318:C:G	rs707225	C	G	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr16	84504672	84504673	chr16:84504673:C:G	rs1048128786	C	G	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr16	84504688	84504689	chr16:84504689:T:C	rs76395742	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr16	84538362	84538363	chr16:84538363:C:A	rs378138	C	A	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr16	84610418	84610419	chr16:84610419:T:G	rs35241774	T	G	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr16	84622697	84622698	chr16:84622698:A:G	rs9674410	A	G	A	Sox3.mouse_HMG_3	10	1	+	0.9218453184953941	-5.686105323045404	AATAAAAGCTAGTCAGG
chr16	84703394	84703395	chr16:84703395:C:G	rs56163001	C	G	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr16	84723733	84723734	chr16:84723734:G:A	rs55634451	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr16	84806429	84806430	chr16:84806430:C:T	rs57191175	C	T	C	Sox3.mouse_HMG_3	11	1	-	-0.7330124176431305	-5.383187143449268	CAGGAAGTCCAGTCATC
chr16	84926697	84926698	chr16:84926698:C:T	rs1874628	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr16	85057261	85057262	chr16:85057262:G:A	rs9940034	G	A	G	Sox3.mouse_HMG_3	13	1	+	2.3129614423366047	2.5375853788212486	GATGCATTTTATTGATC
chr16	85172645	85172646	chr16:85172646:C:T	rs8062375	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr16	85271484	85271485	chr16:85271485:C:T	rs34585609	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr16	85429994	85429995	chr16:85429995:G:A	rs28604313	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr16	85442832	85442833	chr16:85442833:G:A	rs67762861	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr16	85452682	85452683	chr16:85452683:C:G	rs4782704	C	G	C	Sox3.mouse_HMG_3	11	1	-	0.6520446047599824	-3.998130121046155	CCTGAATTTCAGTGAGG
chr16	85498556	85498557	chr16:85498557:G:A	rs55925653	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr16	85535880	85535881	chr16:85535881:T:C	rs114147303	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr16	85578285	85578286	chr16:85578286:C:T	rs12102555	C	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr16	85614362	85614363	chr16:85614363:A:T	rs1012139501	A	T	A	Sox3.mouse_HMG_3	14	1	+	1.6511258024735291	-4.730820363953382	ATTAAATTCCCTTCATG
chr16	85673760	85673761	chr16:85673761:G:C	rs871290	G	C	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr16	85987089	85987090	chr16:85987090:T:C	rs41428948	T	C	T	Sox3.mouse_HMG_3	2	1	+	3.5713557803629783	-3.0345233378679533	AATGAATGGGACTCAAT
chr16	86045749	86045750	chr16:86045750:C:T	rs80156872	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr16	86045778	86045779	chr16:86045779:A:G	rs66692701	A	G	G	Sox3.mouse_HMG_3	10	1	+	0.9688287500464512	-5.639121891494347	CAGGAATGACACTCAGG
chr16	86045799	86045800	chr16:86045800:T:G	rs12597437	T	G	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr16	86156370	86156371	chr16:86156371:T:C	rs78671571	T	C	T	Sox3.mouse_HMG_3	6	1	+	0.08493937918415928	-6.523011262356636	GCTGAGTGTCAGTCCTG
chr16	86200147	86200148	chr16:86200148:C:A	rs276966	C	A	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr16	86308766	86308767	chr16:86308767:C:T	rs2665313	C	T	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr16	86308801	86308802	chr16:86308802:T:A	rs11646415	T	A	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr16	86310211	86310212	chr16:86310212:G:T	rs16940807	G	T	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr16	86324098	86324099	chr16:86324099:G:C	rs1510207	G	C	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr16	86338355	86338356	chr16:86338356:G:A	rs76779787	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr16	86471264	86471265	chr16:86471265:G:C	rs12930792	G	C	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr16	86586205	86586206	chr16:86586206:T:C	rs4843402	T	C	T	Sox3.mouse_HMG_3	4	1	-	4.201145176427495	-2.181671551566571	AAAGAGTTGTATTCATT
chr16	86591256	86591257	chr16:86591257:G:A	rs4843404	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr16	86599028	86599029	chr16:86599029:T:A	rs437080	T	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr16	86599031	86599032	chr16:86599032:C:T	rs443812	C	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr16	86611266	86611267	chr16:86611267:A:G	rs429312	A	G	A	Sox3.mouse_HMG_3	1	1	+	8.261421070389616	5.1612911339523215	CATGGATTGCATTCATC
chr16	86653365	86653366	chr16:86653366:T:C	rs10514617	T	C	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr16	86668551	86668552	chr16:86668552:C:T	rs7186373	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr16	86670789	86670790	chr16:86670790:A:C	rs11866010	A	C	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr16	86733843	86733844	chr16:86733844:A:T	rs80087248	A	T	A	Sox3.mouse_HMG_3	4	1	+	2.2285488624926124	-4.378891801986101	AAGCAATTCTAGTCATG
chr16	86733853	86733854	chr16:86733854:A:G	rs79504021	A	G	A	Sox3.mouse_HMG_3	14	1	+	2.2285488624926124	-4.153397303934299	AAGCAATTCTAGTCATG
chr16	86739131	86739132	chr16:86739132:A:G	rs12923080	A	G	G	Sox3.mouse_HMG_3	15	1	-	-0.23026342408450562	-4.944656835799574	GGTGAAATATTGTCATG
chr16	86836845	86836846	chr16:86836846:A:C	rs115531731	A	C	A	Sox3.mouse_HMG_3	10	1	+	1.1651810032506742	-5.5858704819307965	ATTGGTTTCTATTCATA
chr16	86854458	86854459	chr16:86854459:C:T	rs58059090	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr16	86854483	86854484	chr16:86854484:A:G	rs114548172	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.086121738202067	-4.521828903338729	CATGAACTCTATTCTTT
chr16	86856014	86856015	chr16:86856015:G:A	rs12448444	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr16	86862308	86862309	chr16:86862309:G:C	rs11640239	G	C	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr16	86867909	86867910	chr16:86867910:A:G	rs74319428	A	G	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr16	86885216	86885217	chr16:86885217:G:C	rs58607576	G	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr16	86998191	86998192	chr16:86998192:T:C	rs7184988	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr16	87009684	87009685	chr16:87009685:T:C	rs12445522	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr16	87054924	87054925	chr16:87054925:T:A	rs3909501	T	A	T	Sox3.mouse_HMG_3	15	1	+	0.7035000106032236	-1.5603094536335975	TCGGCATGACATTCATG
chr16	87105111	87105112	chr16:87105112:T:C	rs73246136	T	C	T	Sox3.mouse_HMG_3	10	1	-	3.615172909229955	-2.9927777323108424	AATGAAATACATTTATG
chr16	87190686	87190687	chr16:87190687:A:G	rs12711473	A	G	G	Sox3.mouse_HMG_3	15	1	-	1.825506918257756	-2.8888864934573126	TGTAAATGCCAGTAATA
chr16	87211108	87211109	chr16:87211109:A:G	rs77852118	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr16	87214737	87214738	chr16:87214738:G:T	rs11645206	G	T	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr16	87394747	87394748	chr16:87394748:A:T	rs148617165	A	T	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr16	87457543	87457544	chr16:87457544:T:C	rs76666223	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr16	87465349	87465350	chr16:87465350:G:A	rs77941606	G	A	g	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr16	87629710	87629711	chr16:87629711:C:T	rs8045991	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr16	87698278	87698279	chr16:87698279:A:C	rs184105307	A	C	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr16	87728219	87728220	chr16:87728220:T:C	rs79073849	T	C	T	Sox3.mouse_HMG_3	14	1	-	0.8763870964047409	-5.505559070022169	TCTGAGTTGCAGTCAGC
chr16	87816063	87816064	chr16:87816064:T:C	rs4843706	T	C	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr16	87853227	87853228	chr16:87853228:C:T	rs77295914	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr16	88057648	88057649	chr16:88057649:A:G	rs72818554	A	G	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr16	88131253	88131254	chr16:88131254:A:G	rs74251082	A	G	-	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr16	88326879	88326880	chr16:88326880:G:A	rs35321960	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr16	88457980	88457981	chr16:88457981:A:C	rs4782302	A	C	A	Sox3.mouse_HMG_3	2	1	+	6.070699785991977	5.192149382100669	TAAGAATAATATTCATA
chr16	88560351	88560352	chr16:88560352:T:C	rs7199364	T	C	t	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr16	88561629	88561630	chr16:88561630:C:T	rs76964266	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr16	88561630	88561631	chr16:88561631:A:C	rs76534765	A	C	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr16	88706754	88706755	chr16:88706755:C:G	rs529919447	C	G	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr16	88799255	88799256	chr16:88799256:A:C	rs113361432	A	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr16	88799258	88799259	chr16:88799259:G:T	rs80275136	G	T	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr16	89080453	89080454	chr16:89080454:C:G	rs9929697	C	G	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr16	89086690	89086691	chr16:89086691:T:C	rs4782335	T	C	C	Sox3.mouse_HMG_3	16	1	-	7.86528437125985	7.901224827712376	GCTGAAGGCCATTCATA
chr16	89135632	89135633	chr16:89135633:C:T	rs12934720	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr16	89232158	89232159	chr16:89232159:G:A	rs12934482	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr16	89357668	89357669	chr16:89357669:G:A	rs1026042741	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr16	89357696	89357697	chr16:89357697:A:C	chr16:89357697:A:C	A	C	A	Sox3.mouse_HMG_3	14	1	+	-0.8556655887667333	-7.237611755193645	GAGGAATGCCTGTCACA
chr16	89357709	89357710	chr16:89357710:C:T	rs3114878	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr16	89488905	89488906	chr16:89488906:T:C	rs4785569	T	C	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr16	89686777	89686778	chr16:89686778:C:T	rs199980902	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr16	89686778	89686779	chr16:89686779:G:T	rs750731471	G	T	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr16	89700214	89700215	chr16:89700215:G:C	rs146425044	G	C	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr16	89700229	89700230	chr16:89700230:C:G	rs117963037	C	G	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr16	89700257	89700258	chr16:89700258:C:A	rs117568059	C	A	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr16	90007676	90007677	chr16:90007677:T:A	rs11076654	T	A	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr16	90016830	90016831	chr16:90016831:A:G	rs77603042	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr16	90040634	90040635	chr16:90040635:A:G	rs9922090	A	G	A	Sox3.mouse_HMG_3	14	1	+	-0.7169478736962656	-7.098894040123177	GAGGAGGGGCATTCATG
chr16	90077443	90077444	chr16:90077444:C:T	chr16:90077444:C:T	C	T	.	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr16	90077447	90077448	chr16:90077448:G:C	rs1022518917	G	C	.	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr17	142788	142789	chr17:142789:T:A	rs905159635	T	A	.	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr17	232589	232590	chr17:232590:C:T	rs34314694	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr17	232590	232591	chr17:232591:G:A	rs61214440	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr17	551991	551992	chr17:551992:C:T	rs2304949	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr17	676488	676489	chr17:676489:G:C	rs11654989	G	C	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr17	676535	676536	chr17:676536:C:T	rs370861	C	T	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr17	731446	731447	chr17:731447:T:C	rs12943242	T	C	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr17	813583	813584	chr17:813584:G:A	rs1741274	G	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr17	889091	889092	chr17:889092:C:A	rs2457269	C	A	a	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr17	910090	910091	chr17:910091:C:G	rs550569230	C	G	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr17	911326	911327	chr17:911327:G:A	rs62070212	G	A	G	Sox3.mouse_HMG_3	9	1	-	-0.29552049959810733	-0.28788382260636136	GAAGACTTGCATTAATG
chr17	928426	928427	chr17:928427:C:T	rs2360111	C	T	c	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr17	934556	934557	chr17:934557:T:A	rs6598837	T	A	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr17	1052271	1052272	chr17:1052272:T:C	rs7220091	T	C	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr17	1231865	1231866	chr17:1231866:A:C	rs35446675	A	C	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr17	1391600	1391601	chr17:1391601:A:C	rs2131431	A	C	A	Sox3.mouse_HMG_3	15	1	-	7.12679112869392	4.004200317600679	TGTTAATGCTAGTCATG
chr17	1669492	1669493	chr17:1669493:A:G	rs765453072	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr17	1949536	1949537	chr17:1949537:C:T	rs11651877	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr17	1961454	1961455	chr17:1961455:C:T	rs9646401	C	T	T	Sox3.mouse_HMG_3	15	1	-	4.509590835765897	5.368372182622317	AGTGAATGCCAATCAGT
chr17	1961455	1961456	chr17:1961456:T:C	rs985441760	T	C	T	Sox3.mouse_HMG_3	14	1	-	4.509590835765897	-1.872355330661014	AGTGAATGCCAATCAGT
chr17	2010882	2010883	chr17:2010883:G:A	rs4790862	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr17	2082548	2082549	chr17:2082549:C:T	rs8069947	C	T	c	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr17	2214650	2214651	chr17:2214651:A:G	rs2281727	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr17	2351898	2351899	chr17:2351899:A:G	rs898750	A	G	A	Sox3.mouse_HMG_3	15	1	+	-0.591378660377736	-1.4501600072341565	GCTGAATGCCTTCCAAA
chr17	2354569	2354570	chr17:2354570:A:G	rs2447107	A	G	G	Sox3.mouse_HMG_3	4	1	+	2.36835043711322	-4.014466290880848	GATGACTTCCAGTCTTT
chr17	2489247	2489248	chr17:2489248:C:G	rs8078450	C	G	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr17	2515428	2515429	chr17:2515429:G:A	rs67061289	G	A	G	Sox3.mouse_HMG_3	13	1	-	6.2869591894098775	-0.3203014210521422	AATTAATTTCAGTCAAG
chr17	2985746	2985747	chr17:2985747:G:A	rs117896912	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr17	2995997	2995998	chr17:2995998:A:G	rs4790406	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr17	3448041	3448042	chr17:3448042:C:T	rs4790484	C	T	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr17	3515163	3515164	chr17:3515164:A:G	rs4790506	A	G	A	Sox3.mouse_HMG_3	6	1	-	2.8138461699888375	-3.794104471551959	TGTGAATTGAAGTCACA
chr17	3560895	3560896	chr17:3560896:G:A	rs60292929	G	A	g	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr17	3642858	3642859	chr17:3642859:T:C	rs78626973	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr17	3647944	3647945	chr17:3647945:T:G	chr17:3647945:T:G	T	G	T	Sox3.mouse_HMG_3	2	1	+	3.0364444226697076	-3.712535539201899	GGTGAATGCCGCTCATG
chr17	3660995	3660996	chr17:3660996:T:C	rs1048647	T	C	t	Sox3.mouse_HMG_3	7	1	+	8.63617617816739	3.2327649981900715	TCTGAATTGGATTCATG
chr17	3660999	3661000	chr17:3661000:T:C	rs1048648	T	C	C	Sox3.mouse_HMG_3	11	1	+	8.63617617816739	2.5515653520654453	TCTGAATTGGATTCATG
chr17	3771225	3771226	chr17:3771226:A:C	rs74400548	A	C	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr17	3771244	3771245	chr17:3771245:C:G	rs11649973	C	G	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr17	4062513	4062514	chr17:4062514:A:G	rs2123845	A	G	A	Sox3.mouse_HMG_3	7	1	-	0.8897036265167215	-4.513707553460597	TGAGAATTGCATTCCTC
chr17	4131161	4131162	chr17:4131162:A:G	rs7219998	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr17	4131176	4131177	chr17:4131177:A:C	rs7220006	A	C	A	Sox3.mouse_HMG_3	1	1	+	-0.2520022579241006	-4.428861771779996	GAAGAATGGGATCCAAG
chr17	4405781	4405782	chr17:4405782:C:T	rs35074337	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr17	4477012	4477013	chr17:4477013:C:T	rs729535	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr17	5115736	5115737	chr17:5115737:G:A	rs11657994	G	A	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr17	5194523	5194524	chr17:5194524:C:T	chr17:5194524:C:T	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr17	5269560	5269561	chr17:5269561:A:G	rs573656627	A	G	A	Sox3.mouse_HMG_3	2	1	-	1.2915810573178261	-5.314298060913104	TTTGAGTTATTTTCATA
chr17	5365416	5365417	chr17:5365417:A:G	rs2309381	A	G	A	Sox3.mouse_HMG_3	11	1	-	1.015727929023131	-5.068882897078815	TTTGAAAGTTATTCTTT
chr17	5420603	5420604	chr17:5420604:T:C	rs8078914	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr17	5505596	5505597	chr17:5505597:C:G	rs8068187	C	G	G	Sox3.mouse_HMG_3	15	1	-	-0.5366982635029892	-2.128500864124816	AATGCGTGGCAGTCAGT
chr17	5515834	5515835	chr17:5515835:C:A	rs79435798	C	A	C	Sox3.mouse_HMG_3	12	1	+	-0.045928516630841854	0.03411419104269453	CCTGAATTGTATCCCTG
chr17	5618664	5618665	chr17:5618665:C:A	rs2733357	C	A	C	Sox3.mouse_HMG_3	13	1	+	1.238099070362382	-5.144537603614995	TTTGAGATTCATTCATG
chr17	5632223	5632224	chr17:5632224:T:C	rs2670645	T	C	T	Sox3.mouse_HMG_3	12	1	+	2.835191639324413	-3.3576619280763538	AATGGATGGCAGTGATT
chr17	5660274	5660275	chr17:5660275:A:G	rs4790801	A	G	A	Sox3.mouse_HMG_3	0	1	-	0.45068859269011297	-1.0041820526467518	TCTGAAGTGGAGTCATG
chr17	5869530	5869531	chr17:5869531:C:T	rs35201685	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr17	5919211	5919212	chr17:5919212:T:G	rs12602443	T	G	G	Sox3.mouse_HMG_3	8	1	-	3.2615757929494675	3.4419097714493487	AATAAATTATTTTCATT
chr17	5921922	5921923	chr17:5921923:A:C	chr17:5921923:A:C	A	C	A	Sox3.mouse_HMG_3	15	1	-	-0.07847211487114025	-3.201062925964382	TATGAATCGTCATCATG
chr17	6019162	6019163	chr17:6019163:T:C	rs72635504	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr17	6106885	6106886	chr17:6106886:C:G	rs11078607	C	G	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr17	6137685	6137686	chr17:6137686:C:G	rs9891117	C	G	c	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr17	6147302	6147303	chr17:6147303:G:C	rs7406997	G	C	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr17	6517230	6517231	chr17:6517231:C:T	rs7218891	C	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr17	6564748	6564749	chr17:6564749:T:G	rs7222695	T	G	G	Sox3.mouse_HMG_3	8	1	-	1.6599684426697146	1.8403024211695962	TTTGAAATACATACATA
chr17	6642846	6642847	chr17:6642847:G:A	rs78547240	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr17	6776719	6776720	chr17:6776720:C:A	chr17:6776720:C:A	C	A	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr17	7015302	7015303	chr17:7015303:G:A	rs146079237	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr17	7094397	7094398	chr17:7094398:A:G	rs112938807	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr17	7331548	7331549	chr17:7331549:T:C	rs4796302	T	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr17	7480878	7480879	chr17:7480879:G:A	rs7222404	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr17	7825445	7825446	chr17:7825446:A:G	rs73977765	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr17	7886106	7886107	chr17:7886107:C:T	rs561948925	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr17	7977019	7977020	chr17:7977020:C:T	rs76403446	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr17	7977028	7977029	chr17:7977029:C:T	rs8074694	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr17	8058841	8058842	chr17:8058842:A:G	rs9911432	A	G	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr17	8124497	8124498	chr17:8124498:T:G	rs140639313	T	G	T	Sox3.mouse_HMG_3	8	1	+	5.381093187334885	6.085995600928923	GCTGAATTTTATACATC
chr17	8221075	8221076	chr17:8221076:G:A	rs150235628	G	A	G	Sox3.mouse_HMG_3	13	1	-	5.244877892215809	-1.362382718246211	GATGAATTTAATTCCTA
chr17	8226729	8226730	chr17:8226730:C:T	rs3027250	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr17	8226769	8226770	chr17:8226770:T:C	rs570429563	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr17	8294594	8294595	chr17:8294595:C:T	rs146446124	C	T	c	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr17	8354294	8354295	chr17:8354295:C:T	rs4792346	C	T	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr17	8384604	8384605	chr17:8384605:G:A	rs140677851	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr17	8412853	8412854	chr17:8412854:C:A	rs9895315	C	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr17	8571476	8571477	chr17:8571477:C:T	rs72845200	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr17	8664529	8664530	chr17:8664530:A:G	rs4791733	A	G	G	Sox3.mouse_HMG_3	0	1	-	-0.006461546130536622	-1.461332191467405	TTGGGATTACAGTCATG
chr17	8806160	8806161	chr17:8806161:G:A	rs60422945	G	A	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr17	8806243	8806244	chr17:8806244:A:C	rs61660348	A	C	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr17	8831685	8831686	chr17:8831686:A:G	rs10153262	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr17	8846743	8846744	chr17:8846744:A:G	rs9903136	A	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr17	8949106	8949107	chr17:8949107:A:G	rs143526411	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr17	9085231	9085232	chr17:9085232:A:G	rs8074523	A	G	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr17	9217651	9217652	chr17:9217652:G:A	rs150831954	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr17	9217659	9217660	chr17:9217660:G:A	rs112839006	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr17	9329564	9329565	chr17:9329565:A:G	rs73267993	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr17	9410158	9410159	chr17:9410159:A:C	rs62067153	A	C	A	Sox3.mouse_HMG_3	12	1	-	4.503819681778962	-1.877255164542948	AATCCATGCCATTCATG
chr17	9472702	9472703	chr17:9472703:T:A	rs117134866	T	A	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr17	9472710	9472711	chr17:9472711:G:T	rs16958320	G	T	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr17	9536185	9536186	chr17:9536186:T:C	rs78638576	T	C	T	Sox3.mouse_HMG_3	9	1	+	3.5859723726024733	3.5783356956107255	TATGAATTATATTACTT
chr17	9576358	9576359	chr17:9576359:A:C	rs6503231	A	C	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr17	9576362	9576363	chr17:9576363:T:A	rs117620514	T	A	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr17	9648363	9648364	chr17:9648364:C:A	rs73255715	C	A	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr17	9672513	9672514	chr17:9672514:T:C	rs73255750	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr17	9772694	9772695	chr17:9772695:C:T	rs72822108	C	T	C	Sox3.mouse_HMG_3	7	1	-	8.739219095522621	2.185670380864895	GATGAATGACCTTCAGA
chr17	9930780	9930781	chr17:9930781:T:C	rs3786114	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr17	10006259	10006260	chr17:10006260:C:T	rs60590406	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr17	10020360	10020361	chr17:10020361:A:G	rs144864696	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr17	10177780	10177781	chr17:10177781:T:A	rs9899278	T	A	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr17	10215475	10215476	chr17:10215476:T:C	rs17688231	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr17	10233702	10233703	chr17:10233703:G:A	rs8077735	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr17	10249487	10249488	chr17:10249488:T:C	rs7213745	T	C	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr17	10270189	10270190	chr17:10270190:C:G	rs2320557	C	G	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr17	10429609	10429610	chr17:10429610:G:T	rs62058113	G	T	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr17	10668871	10668872	chr17:10668872:T:C	rs4791414	T	C	T	Sox3.mouse_HMG_3	15	1	+	2.5699637258906503	-2.144429685824418	TGTGAATAGTCTTCATA
chr17	11004458	11004459	chr17:11004459:A:C	rs62060872	A	C	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr17	11035884	11035885	chr17:11035885:A:G	rs75218424	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr17	11218665	11218666	chr17:11218666:C:T	rs9904109	C	T	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr17	11330717	11330718	chr17:11330718:A:C	rs11869601	A	C	C	Sox3.mouse_HMG_3	11	1	-	-0.3894697540569533	-1.8239058543527604	CGTGTATGCTGTTCATT
chr17	11545939	11545940	chr17:11545940:G:A	rs74584377	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr17	11545968	11545969	chr17:11545969:A:C	rs2908957	A	C	A	Sox3.mouse_HMG_3	10	1	+	6.015509866971788	-0.7355416182096816	GCTGTATTCTATTCATT
chr17	11565455	11565456	chr17:11565456:T:C	rs4792150	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr17	12391598	12391599	chr17:12391599:A:C	rs2529714	A	C	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr17	12445437	12445438	chr17:12445438:T:C	rs8066651	T	C	C	Sox3.mouse_HMG_3	2	1	+	10.76625043358682	4.160371315355888	CATGAATGTTAATCATG
chr17	12628367	12628368	chr17:12628368:A:G	rs1519252	A	G	A	Sox3.mouse_HMG_3	12	1	-	0.6977457715278113	-5.495107795872955	TGAGCATTCCAGTCATG
chr17	12958582	12958583	chr17:12958583:A:G	rs538528515	A	G	A	Sox3.mouse_HMG_3	14	1	+	4.637286944462248	-1.7446592219646622	GATGCATTATATTAATA
chr17	12978977	12978978	chr17:12978978:A:G	rs35835556	A	G	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr17	13096348	13096349	chr17:13096349:A:G	rs370644437	A	G	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr17	13114137	13114138	chr17:13114138:T:G	rs76088534	T	G	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr17	13141186	13141187	chr17:13141187:A:T	rs60617848	A	T	A	Sox3.mouse_HMG_3	1	1	+	1.5032135900155434	-1.4668632181735521	AATGTATTCTTTTCAAA
chr17	13141190	13141191	chr17:13141191:A:G	rs79529149	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.5032135900155434	-4.98562133205532	AATGTATTCTTTTCAAA
chr17	13195459	13195460	chr17:13195460:C:T	rs139348226	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr17	13241444	13241445	chr17:13241445:T:G	rs2322858	T	G	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr17	13311114	13311115	chr17:13311115:A:G	rs16947597	A	G	A	Sox3.mouse_HMG_3	7	1	-	0.5911441268551063	-4.812267053122212	ACTGTATTGTATCCATA
chr17	13423368	13423369	chr17:13423369:G:T	chr17:13423369:G:T	G	T	g	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr17	13477337	13477338	chr17:13477338:A:G	rs73292014	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr17	13477372	13477373	chr17:13477373:A:G	rs73292015	A	G	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr17	13777142	13777143	chr17:13777143:G:A	rs139325255	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr17	13777188	13777189	chr17:13777189:G:A	rs2241922	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr17	13806170	13806171	chr17:13806171:G:A	rs1031590959	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr17	13806181	13806182	chr17:13806182:G:A	rs11868579	G	A	A	Sox3.mouse_HMG_3	8	1	+	-0.9107187532296643	-1.5338354004074777	GATGAATCGCAGACTTG
chr17	13929013	13929014	chr17:13929014:G:A	rs11659093	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr17	13995503	13995504	chr17:13995504:T:C	rs74990346	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr17	14004548	14004549	chr17:14004549:A:G	rs8067217	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr17	14050772	14050773	chr17:14050773:A:G	rs28680611	A	G	g	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr17	14189650	14189651	chr17:14189651:T:G	rs3888175	T	G	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr17	14313406	14313407	chr17:14313407:C:T	rs9890556	C	T	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr17	14313418	14313419	chr17:14313419:A:G	rs9890382	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr17	14381703	14381704	chr17:14381704:G:A	rs113752928	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr17	14422983	14422984	chr17:14422984:G:A	rs2022237	G	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr17	14460777	14460778	chr17:14460778:T:C	rs9907373	T	C	C	Sox3.mouse_HMG_3	7	1	+	0.4506049174874911	-4.952806262489827	AGTGAATTGCAGCAATA
chr17	14583424	14583425	chr17:14583425:C:A	rs2109170	C	A	A	Sox3.mouse_HMG_3	13	1	+	-0.09456403771069843	-6.477200711688074	ACTGAATGCTAGACCTG
chr17	14621882	14621883	chr17:14621883:C:G	rs12945632	C	G	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr17	14715694	14715695	chr17:14715695:A:G	rs74374428	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr17	14727506	14727507	chr17:14727507:T:C	rs11078267	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr17	14773553	14773554	chr17:14773554:G:A	rs7209265	G	A	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr17	14819988	14819989	chr17:14819989:A:G	rs2323497	A	G	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr17	14831612	14831613	chr17:14831613:A:T	rs77162753	A	T	A	Sox3.mouse_HMG_3	1	1	+	2.3218829119714606	-0.6481938962176332	TATGAATTCTCTGCAAG
chr17	14987766	14987767	chr17:14987767:G:A	rs8081195	G	A	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr17	15012691	15012692	chr17:15012692:A:G	rs8082037	A	G	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr17	15684088	15684089	chr17:15684089:C:A	rs170912	C	A	c	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr17	15911735	15911736	chr17:15911736:C:T	rs859253	C	T	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr17	15963950	15963951	chr17:15963951:C:G	rs146686306	C	G	c	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr17	16025688	16025689	chr17:16025689:C:A	rs62073587	C	A	C	Sox3.mouse_HMG_3	3	1	-	1.8667046150907982	-5.039789869423916	GATGATTTCAATTCAAT
chr17	16027734	16027735	chr17:16027735:G:T	rs115686307	G	T	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr17	16052986	16052987	chr17:16052987:T:G	rs77583787	T	G	T	Sox3.mouse_HMG_3	4	1	-	3.815465870441705	-2.935075637677679	ACTGAATTTTATTGAAA
chr17	16106527	16106528	chr17:16106528:A:G	rs73981453	A	G	G	Sox3.mouse_HMG_3	1	1	+	1.7972347941322255	-1.3028951423050659	CATGAAAGATACTCAAA
chr17	16268130	16268131	chr17:16268131:A:G	rs77182281	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr17	16341069	16341070	chr17:16341070:T:C	rs714285	T	C	T	Sox3.mouse_HMG_3	15	1	+	0.19723033086964126	-4.517163080845427	GATGGATGGCAATGATG
chr17	16398446	16398447	chr17:16398447:A:C	rs6502503	A	C	N	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr17	16438625	16438626	chr17:16438626:C:T	rs558866895	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr17	16438657	16438658	chr17:16438658:T:C	rs938370219	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr17	16438663	16438664	chr17:16438664:C:A	rs892950794	C	A	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr17	16441560	16441561	chr17:16441561:C:T	rs9251	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr17	16445785	16445786	chr17:16445786:A:G	rs35076500	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr17	16487204	16487205	chr17:16487205:T:A	rs16959752	T	A	A	Sox3.mouse_HMG_3	14	1	-	0.6428727493627	-5.739073417064211	CTGGAATGCTTTTCATG
chr17	16889274	16889275	chr17:16889275:T:C	rs8072394	T	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr17	16922602	16922603	chr17:16922603:T:C	rs76577879	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr17	16936266	16936267	chr17:16936267:C:G	rs183180649	C	G	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr17	16977968	16977969	chr17:16977969:T:C	rs7220753	T	C	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr17	16988950	16988951	chr17:16988951:G:A	rs9907308	G	A	A	Sox3.mouse_HMG_3	7	1	+	3.395273247695319	-3.158275466962409	GATGAATGTGATGCAAT
chr17	16988958	16988959	chr17:16988959:A:G	rs116846623	A	G	A	Sox3.mouse_HMG_3	15	1	+	3.395273247695319	2.5364919008388984	GATGAATGTGATGCAAT
chr17	17056975	17056976	chr17:17056976:A:G	rs11654360	A	G	G	Sox3.mouse_HMG_3	10	1	+	0.7710503033042974	-5.8369003382365	TATGGATGGTAGACAGT
chr17	17064496	17064497	chr17:17064497:G:A	rs113004656	G	A	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr17	17223762	17223763	chr17:17223763:G:A	rs72842537	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr17	17242904	17242905	chr17:17242905:C:T	rs9896078	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr17	17419945	17419946	chr17:17419946:C:T	rs4539660	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr17	17422636	17422637	chr17:17422637:T:G	rs16961675	T	G	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr17	17489921	17489922	chr17:17489922:G:C	rs1242490	G	C	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr17	17536184	17536185	chr17:17536185:T:C	rs1185925937	T	C	T	Sox3.mouse_HMG_3	2	1	+	0.8013572374769246	-5.804521880754007	CATGTATCCTATTCAAT
chr17	17561873	17561874	chr17:17561874:A:G	rs74372144	A	G	A	Sox3.mouse_HMG_3	10	1	+	1.2849033815816446	-5.323047259959153	CAGGAAGTCCAGTCATA
chr17	17566140	17566141	chr17:17566141:C:T	rs4646360	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr17	17641389	17641390	chr17:17641390:C:T	rs12449964	C	T	C	Sox3.mouse_HMG_3	3	1	-	-0.5981562988640834	-6.379721186393317	GGCGACTTCCATTCAAG
chr17	17663399	17663400	chr17:17663400:C:T	rs556648156	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr17	17750095	17750096	chr17:17750096:A:G	chr17:17750096:A:G	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.3282292447940258	-3.3861641669210423	TGTGAATGCAAGTGATA
chr17	17750096	17750097	chr17:17750097:T:C	rs12945601	T	C	T	Sox3.mouse_HMG_3	14	1	-	1.3282292447940258	-5.053716921632885	TGTGAATGCAAGTGATA
chr17	17967463	17967464	chr17:17967464:A:G	rs117890270	A	G	A	Sox3.mouse_HMG_3	1	1	-	3.183097452339468	1.9763147466726678	GTTGGATGACATACATG
chr17	18626007	18626008	chr17:18626008:T:G	rs186609319	T	G	.	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr17	18626008	18626009	chr17:18626009:T:A	rs191011614	T	A	.	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr17	18768419	18768420	chr17:18768420:C:A	rs10775382	C	A	A	Sox3.mouse_HMG_3	5	1	+	2.554294024901925	9.161734689380637	AGTGACTGGCAGTCACA
chr17	18884662	18884663	chr17:18884663:T:C	rs7222748	T	C	t	Sox3.mouse_HMG_3	1	1	-	2.984049431351261	-0.11608050508603118	TAAGAATAATATTCAGG
chr17	18900272	18900273	chr17:18900273:C:T	rs9901087	C	T	c	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr17	18965563	18965564	chr17:18965564:G:A	rs143204573	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr17	19702255	19702256	chr17:19702256:T:C	rs76119305	T	C	T	Sox3.mouse_HMG_3	14	1	-	2.781654131616543	-3.6002920348103684	GCTGAATGGCAACCATA
chr17	19788138	19788139	chr17:19788139:A:G	rs141488373	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr17	20083547	20083548	chr17:20083548:T:A	rs4925079	T	A	T	Sox3.mouse_HMG_3	4	1	+	1.1845166107498435	7.791957275228555	TGTGTGTGCTATTCATT
chr17	20155439	20155440	chr17:20155440:A:T	rs567527440	A	T	A	Sox3.mouse_HMG_3	1	1	+	2.085423144018127	-0.8846536641709684	GATGAAAGTCGTTCAGG
chr17	20210903	20210904	chr17:20210904:T:C	rs1544421	T	C	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr17	20215185	20215186	chr17:20215186:T:C	rs2703815	T	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr17	20218231	20218232	chr17:20218232:A:G	rs73981849	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr17	20262307	20262308	chr17:20262308:T:C	rs72830202	T	C	.	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr17	20271538	20271539	chr17:20271539:G:A	rs9897328	G	A	.	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr17	20665303	20665304	chr17:20665304:A:G	rs58233933	A	G	.	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr17	20934586	20934587	chr17:20934587:T:G	rs11204323	T	G	.	Sox3.mouse_HMG_3	6	1	+	2.6964618428768095	-4.054589642304661	AATAAATGTTATACAGA
chr17	20955385	20955386	chr17:20955386:T:C	rs59922030	T	C	.	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr17	21018954	21018955	chr17:21018955:G:A	rs984007	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr17	21046374	21046375	chr17:21046375:A:G	rs4985969	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr17	21099823	21099824	chr17:21099824:A:G	rs191929784	A	G	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr17	21162050	21162051	chr17:21162051:C:A	rs144788042	C	A	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr17	21199524	21199525	chr17:21199525:A:C	rs17771444	A	C	A	Sox3.mouse_HMG_3	10	1	-	3.4020266310135856	3.545127474654259	TAAGAATGGCTTTCAGG
chr17	21275242	21275243	chr17:21275243:C:A	chr17:21275243:C:A	C	A	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr17	21300874	21300875	chr17:21300875:G:T	rs56067280	G	T	g	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr17	21324510	21324511	chr17:21324511:A:G	rs143132312	A	G	A	Sox3.mouse_HMG_3	2	1	-	0.45398835062006926	-6.151890767610863	GATGAATGGAATGAATG
chr17	21428886	21428887	chr17:21428887:T:C	rs202084591	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr17	21428916	21428917	chr17:21428917:A:G	rs76992515	A	G	a	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr17	21478697	21478698	chr17:21478698:T:C	rs35114835	T	C	T	Sox3.mouse_HMG_3	6	1	+	0.02917233464908242	-6.578778306891715	AGTGAATGCCATCCCAA
chr17	21667593	21667594	chr17:21667594:A:T	rs1352998539	A	T	.	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr17	21667617	21667618	chr17:21667618:G:A	rs1410850914	G	A	.	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr17	21669258	21669259	chr17:21669259:T:A	rs4114275	T	A	.	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr17	21669264	21669265	chr17:21669265:G:C	rs4114276	G	C	.	Sox3.mouse_HMG_3	13	1	-	1.0276283109509703	-5.57963229951105	GATGCAGGGTATTCACA
chr17	21672611	21672612	chr17:21672612:G:A	rs34887163	G	A	.	Sox3.mouse_HMG_3	16	1	+	0.26420118934137404	0.2282607328888484	GTGGAATTACAGGCATG
chr17	21706769	21706770	chr17:21706770:G:A	rs1213358141	G	A	.	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr17	21708592	21708593	chr17:21708593:G:T	rs1486329607	G	T	.	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr17	21714825	21714826	chr17:21714826:C:T	rs1169358497	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr17	21980452	21980453	chr17:21980453:G:T	rs1281953092	G	T	.	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr17	22145836	22145837	chr17:22145837:C:A	rs76596352	C	A	.	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr17	22670493	22670494	chr17:22670494:C:T	rs115302492	C	T	c	Sox3.mouse_HMG_3	0	1	-	-0.045849124644109285	-0.8711330257904533	GATGAAAGGCAGTCCCA
chr17	26720210	26720211	chr17:26720211:A:C	rs71208295	A	C	a	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr17	26780387	26780388	chr17:26780388:A:C	rs1196881017	A	C	N	Sox3.mouse_HMG_3	4	1	+	0.6449202810195159	-6.105621227099871	CATGAACTCCAGGCATT
chr17	26792693	26792694	chr17:26792694:A:C	chr17:26792694:A:C	A	C	N	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr17	26792696	26792697	chr17:26792697:G:A	chr17:26792697:G:A	G	A	N	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr17	26861440	26861441	chr17:26861441:T:G	rs1377947766	T	G	N	Sox3.mouse_HMG_3	14	1	-	4.539875506383929	-1.8420706600429817	TTTCAATTCCATTCAAT
chr17	26864431	26864432	chr17:26864432:G:A	rs1414871486	G	A	N	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr17	26866850	26866851	chr17:26866851:T:G	rs1217653207	T	G	N	Sox3.mouse_HMG_3	8	1	-	2.546164486680482	2.726498465180363	AATAAATTACATTCGAG
chr17	26936702	26936703	chr17:26936703:G:C	rs796216678	G	C	g	Sox3.mouse_HMG_3	9	1	-	3.484130288843199	-1.8557987185313658	ATTGAATTCCATTCCAC
chr17	27239602	27239603	chr17:27239603:T:G	rs62057211	T	G	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr17	27333349	27333350	chr17:27333350:G:A	rs79730408	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr17	27354766	27354767	chr17:27354767:T:C	rs62058596	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr17	27370901	27370902	chr17:27370902:T:C	rs1676586	T	C	C	Sox3.mouse_HMG_3	1	1	+	11.867766174590827	10.660983468924027	ATTGAATTTCATTCATC
chr17	27449635	27449636	chr17:27449636:T:C	rs4795677	T	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr17	27504809	27504810	chr17:27504810:C:T	rs72847754	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr17	27547311	27547312	chr17:27547312:C:T	rs2945386	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr17	27547340	27547341	chr17:27547341:C:T	rs117533295	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr17	27596781	27596782	chr17:27596782:A:G	rs9902634	A	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr17	27895493	27895494	chr17:27895494:G:A	rs2079714	G	A	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr17	27915821	27915822	chr17:27915822:C:A	rs11657739	C	A	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr17	27966536	27966537	chr17:27966537:A:G	rs11080046	A	G	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr17	27976051	27976052	chr17:27976052:A:T	rs7214317	A	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr17	28230226	28230227	chr17:28230227:C:G	rs146321373	C	G	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr17	28262408	28262409	chr17:28262409:C:T	rs183652196	C	T	c	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr17	28422922	28422923	chr17:28422923:G:A	rs117288663	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr17	28752536	28752537	chr17:28752537:C:T	rs34693224	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr17	28968371	28968372	chr17:28968372:C:T	rs868572508	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr17	28968410	28968411	chr17:28968411:G:A	rs773848903	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr17	28968412	28968413	chr17:28968413:C:T	rs116294447	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr17	29049532	29049533	chr17:29049533:C:T	rs8067658	C	T	T	Sox3.mouse_HMG_3	3	1	-	-0.05480328514863109	-5.8363681726778625	GATGGATGGCTTCCATG
chr17	29129236	29129237	chr17:29129237:G:C	rs11080078	G	C	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr17	29294705	29294706	chr17:29294706:T:C	chr17:29294706:T:C	T	C	T	Sox3.mouse_HMG_3	15	1	+	1.796601939149878	-2.9177914725651903	TTTGCTTTGTATTCATA
chr17	29339204	29339205	chr17:29339205:G:A	rs116667229	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr17	29597160	29597161	chr17:29597161:T:C	rs3098945	T	C	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr17	29777976	29777977	chr17:29777977:C:T	rs370353167	C	T	C	Sox3.mouse_HMG_3	3	1	-	5.500722684998577	-0.28084220253065406	GAAGAATTCCTTTCATG
chr17	29794147	29794148	chr17:29794148:G:A	rs2628165	G	A	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr17	29846640	29846641	chr17:29846641:A:G	rs56088359	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr17	30049844	30049845	chr17:30049845:C:T	rs4132207	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr17	30789075	30789076	chr17:30789076:C:T	rs115692521	C	T	.	Sox3.mouse_HMG_3	11	1	-	0.2733520742905988	-4.376822651515539	AAGGAATTTCAGGCATC
chr17	30831428	30831429	chr17:30831429:A:G	chr17:30831429:A:G	A	G	.	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr17	31395790	31395791	chr17:31395791:A:T	rs731759	A	T	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr17	31402231	31402232	chr17:31402232:C:T	rs8080492	C	T	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr17	31662511	31662512	chr17:31662512:G:T	rs17246595	G	T	G	Sox3.mouse_HMG_3	8	1	+	1.7260925080476341	1.0211900944535963	AATGAGAGGTAGTCATC
chr17	31717086	31717087	chr17:31717087:C:G	rs9903688	C	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr17	31719937	31719938	chr17:31719938:A:G	rs418387	A	G	G	Sox3.mouse_HMG_3	15	1	-	1.5104864983938497	-3.2039069133212186	CAGGAATTACAGGCATG
chr17	31773385	31773386	chr17:31773386:A:T	rs220453	A	T	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr17	31788715	31788716	chr17:31788716:C:G	rs9910876	C	G	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr17	31948917	31948918	chr17:31948918:T:C	rs55978022	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr17	32382694	32382695	chr17:32382695:C:T	rs117628426	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr17	32627206	32627207	chr17:32627207:G:A	rs17182935	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr17	32943862	32943863	chr17:32943863:T:C	rs28989	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr17	32954867	32954868	chr17:32954868:G:C	rs28983	G	C	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr17	33025405	33025406	chr17:33025406:T:C	rs16567	T	C	C	Sox3.mouse_HMG_3	14	1	-	1.608488868089527	-4.773457298337384	TTTGCATTCCATGCATG
chr17	33162079	33162080	chr17:33162080:C:A	rs7212519	C	A	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr17	33291116	33291117	chr17:33291117:A:C	rs111531488	A	C	A	Sox3.mouse_HMG_3	0	1	-	2.0411700868642595	2.3100909406640127	TGTGAATATTAGTCAGC
chr17	33402808	33402809	chr17:33402809:G:A	rs11652620	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr17	33443714	33443715	chr17:33443715:C:T	rs4530183	C	T	-	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr17	33482280	33482281	chr17:33482281:A:G	rs12451359	A	G	G	Sox3.mouse_HMG_3	5	1	+	6.627690736379945	0.13885581430908067	GATGCATGGTATTCACT
chr17	33509585	33509586	chr17:33509586:G:A	rs9916270	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr17	33534721	33534722	chr17:33534722:G:C	rs12938149	G	C	G	Sox3.mouse_HMG_3	8	1	-	1.9699563611068382	2.4127390297847704	CCTGAATTCTAGTCTAA
chr17	33885819	33885820	chr17:33885820:T:C	rs8076707	T	C	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr17	33945882	33945883	chr17:33945883:A:G	rs78845120	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr17	34048978	34048979	chr17:34048979:T:C	rs6505393	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr17	34055817	34055818	chr17:34055818:T:G	rs1989944	T	G	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr17	34201721	34201722	chr17:34201722:G:A	rs12452818	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr17	34259275	34259276	chr17:34259276:A:G	rs569006296	A	G	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr17	34375656	34375657	chr17:34375657:T:G	rs919656	T	G	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr17	34413968	34413969	chr17:34413969:G:A	rs150514	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr17	34467525	34467526	chr17:34467526:C:T	rs919657	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr17	34486782	34486783	chr17:34486783:T:C	rs10853163	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr17	34501284	34501285	chr17:34501285:G:A	rs1437214	G	A	G	Sox3.mouse_HMG_3	3	1	-	3.2889212863632045	3.13191753755354	TGTCAATTTCATTCAGT
chr17	34681620	34681621	chr17:34681621:A:C	rs7502837	A	C	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr17	34741360	34741361	chr17:34741361:G:A	rs8082524	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr17	35045700	35045701	chr17:35045701:A:T	rs140235354	A	T	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr17	35064190	35064191	chr17:35064191:C:G	rs369000630	C	G	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr17	35064202	35064203	chr17:35064203:A:T	rs141217006	A	T	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr17	35121798	35121799	chr17:35121799:T:C	rs1871892	T	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr17	35238992	35238993	chr17:35238993:C:G	rs59251382	C	G	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr17	35284879	35284880	chr17:35284880:C:T	rs772123	C	T	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr17	35490476	35490477	chr17:35490477:G:T	rs79125027	G	T	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr17	35684302	35684303	chr17:35684303:A:C	rs3890901	A	C	A	Sox3.mouse_HMG_3	1	1	+	1.879422712878944	-2.29743680097695	TATGAAATATATTTAAA
chr17	35769045	35769046	chr17:35769046:A:G	rs77838845	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr17	35832561	35832562	chr17:35832562:C:T	rs4796113	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr17	35969045	35969046	chr17:35969046:A:G	rs1635282	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr17	36002488	36002489	chr17:36002489:A:C	rs854626	A	C	C	Sox3.mouse_HMG_3	2	1	-	4.978311902759858	-1.7706680591117456	CATGAATGTCAGACAAC
chr17	36002510	36002511	chr17:36002511:C:T	rs854627	C	T	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr17	36098179	36098180	chr17:36098180:G:T	rs1634507	G	T	g	Sox3.mouse_HMG_3	11	1	+	-0.6592571587869953	0.7751789415088106	CATGAATGCTGGTGAGG
chr17	36115078	36115079	chr17:36115079:T:C	rs1719182	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr17	36213571	36213572	chr17:36213572:C:T	rs200303666	C	T	.	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr17	36213725	36213726	chr17:36213726:A:G	rs201439534	A	G	.	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr17	36222640	36222641	chr17:36222641:A:T	rs1490398333	A	T	.	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr17	36468428	36468429	chr17:36468429:T:C	rs76654913	T	C	t	Sox3.mouse_HMG_3	15	1	+	3.7575837217918506	-0.9568096899232175	AATGAACTACGTTCATG
chr17	36468439	36468440	chr17:36468440:C:T	rs6607370	C	T	t	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr17	36691914	36691915	chr17:36691915:T:C	rs12600420	T	C	T	Sox3.mouse_HMG_3	4	1	-	2.320321084315995	-4.062495643678073	TATGAATTCTTTTAAAG
chr17	36784283	36784284	chr17:36784284:C:T	rs9912522	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr17	36972932	36972933	chr17:36972933:A:G	rs9330246	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr17	37180396	37180397	chr17:37180397:G:A	rs2121017	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr17	37446315	37446316	chr17:37446316:C:T	rs2898656	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr17	37531240	37531241	chr17:37531241:G:A	rs3110629	G	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr17	37531281	37531282	chr17:37531282:C:G	rs3110628	C	G	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr17	37532949	37532950	chr17:37532950:T:C	rs567592747	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr17	37850527	37850528	chr17:37850528:T:C	rs7224568	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr17	37859770	37859771	chr17:37859771:T:C	rs55788166	T	C	c	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr17	38421061	38421062	chr17:38421062:G:A	rs8079899	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr17	38421062	38421063	chr17:38421063:C:A	rs8076095	C	A	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr17	38452895	38452896	chr17:38452896:C:T	rs12942139	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr17	38583851	38583852	chr17:38583852:C:G	rs8071088	C	G	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr17	38609604	38609605	chr17:38609605:G:C	rs7214959	G	C	g	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr17	38609649	38609650	chr17:38609650:C:T	rs7210925	C	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr17	38857559	38857560	chr17:38857560:C:T	rs72819761	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr17	38898204	38898205	chr17:38898205:T:C	rs12943799	T	C	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr17	38898208	38898209	chr17:38898209:C:G	rs8075092	C	G	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr17	38920077	38920078	chr17:38920078:G:A	rs646097	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr17	39094812	39094813	chr17:39094813:T:G	rs9893861	T	G	T	Sox3.mouse_HMG_3	4	1	-	1.1715367003728008	-5.579004807746584	TGAGAATGGCAGTAATT
chr17	39106168	39106169	chr17:39106169:T:A	rs150458825	T	A	T	Sox3.mouse_HMG_3	12	1	+	0.2544925860196824	-5.858318273707547	GGTGAATGGCACTCCAT
chr17	39119096	39119097	chr17:39119097:G:A	rs77812225	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr17	39126327	39126328	chr17:39126328:A:G	rs58201933	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr17	39271128	39271129	chr17:39271129:C:T	rs4795355	C	T	c	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr17	39403375	39403376	chr17:39403376:C:T	rs534401797	C	T	C	Sox3.mouse_HMG_3	16	1	-	0.5155639186165397	0.4796234621640141	GATCACTTGTAGTCAGG
chr17	39499802	39499803	chr17:39499803:C:G	rs62077464	C	G	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr17	39506513	39506514	chr17:39506514:C:T	rs11078906	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr17	39954321	39954322	chr17:39954322:C:T	rs72832972	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr17	39973742	39973743	chr17:39973743:A:T	rs60137005	A	T	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr17	40016051	40016052	chr17:40016052:T:C	rs2071369	T	C	C	Sox3.mouse_HMG_3	7	1	+	1.1766566249355586	-4.226754555041761	GAGGCATTACATTCAGG
chr17	40541563	40541564	chr17:40541564:C:T	chr17:40541564:C:T	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr17	40559586	40559587	chr17:40559587:A:C	rs76716642	A	C	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr17	40568577	40568578	chr17:40568578:C:T	rs1468298051	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr17	40609413	40609414	chr17:40609414:C:T	rs7218478	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr17	40779868	40779869	chr17:40779869:A:G	rs77854608	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr17	40794680	40794681	chr17:40794681:C:A	rs16966289	C	A	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr17	40810937	40810938	chr17:40810938:T:C	rs7226176	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr17	40883799	40883800	chr17:40883800:G:A	rs2524302	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr17	41034286	41034287	chr17:41034287:A:T	rs12936959	A	T	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr17	41059047	41059048	chr17:41059048:G:A	rs187529179	G	A	G	Sox3.mouse_HMG_3	7	1	+	0.12250390937590216	-6.431044805281825	TATGAAGGTGAATCATG
chr17	41354343	41354344	chr17:41354344:T:C	rs8082269	T	C	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr17	41416460	41416461	chr17:41416461:A:C	rs59538284	A	C	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr17	41467455	41467456	chr17:41467456:C:T	rs737487	C	T	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr17	41538872	41538873	chr17:41538873:G:A	rs112294352	G	A	G	Sox3.mouse_HMG_3	14	1	-	-0.6429557188849431	-0.6429557188849431	GATGAATGTTTATCCTG
chr17	41692242	41692243	chr17:41692243:T:A	rs140315172	T	A	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr17	41692258	41692259	chr17:41692259:A:G	rs534793313	A	G	A	Sox3.mouse_HMG_3	14	1	+	-0.22487329359822406	-6.606819460025136	TAACAAGGGCATTCATG
chr17	42215971	42215972	chr17:42215972:G:A	rs16967580	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr17	42282840	42282841	chr17:42282841:A:G	rs56938023	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr17	42362182	42362183	chr17:42362183:A:G	rs744166	A	G	G	Sox3.mouse_HMG_3	15	1	+	1.298986114976706	0.4402047681202854	TATAAATTACTGTCAAG
chr17	42453447	42453448	chr17:42453448:T:C	rs66774412	T	C	t	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr17	42499478	42499479	chr17:42499479:T:A	rs7216927	T	A	-	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr17	43225386	43225387	chr17:43225387:G:A	rs149153680	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr17	43232615	43232616	chr17:43232616:T:C	rs111108608	T	C	-	Sox3.mouse_HMG_3	10	1	-	0.6034279582275903	-6.0045226833132075	GATTAATAATAGTCAGA
chr17	43480605	43480606	chr17:43480606:G:A	rs9903373	G	A	g	Sox3.mouse_HMG_3	11	1	+	4.357603706672464	-0.29257101913367434	CATGAATGACAGTAACA
chr17	43523431	43523432	chr17:43523432:T:C	rs9892162	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr17	43530947	43530948	chr17:43530948:G:C	rs532520947	G	C	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr17	43536444	43536445	chr17:43536445:A:T	rs768185480	A	T	A	Sox3.mouse_HMG_3	2	1	-	2.31247993950268	-3.414848774836945	CCTGATTTCCATTCAGA
chr17	43616026	43616027	chr17:43616027:A:G	rs11079736	A	G	A	Sox3.mouse_HMG_3	9	1	-	0.39653735233015786	0.3889006753384119	CCTGAATGTTAACCATG
chr17	43648192	43648193	chr17:43648193:G:T	rs1966347	G	T	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr17	43650098	43650099	chr17:43650099:T:C	rs4792902	T	C	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr17	43719885	43719886	chr17:43719886:C:G	rs2342312	C	G	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr17	43873570	43873571	chr17:43873571:G:A	rs113214332	G	A	g	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr17	44076798	44076799	chr17:44076799:C:T	rs75348970	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr17	44221249	44221250	chr17:44221250:C:G	rs1187460562	C	G	c	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr17	44230014	44230015	chr17:44230015:G:A	rs12952736	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr17	44309293	44309294	chr17:44309294:G:T	rs76374005	G	T	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr17	44505859	44505860	chr17:44505860:C:G	rs7212640	C	G	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr17	44505867	44505868	chr17:44505868:G:A	rs4793114	G	A	g	Sox3.mouse_HMG_3	7	1	+	3.542346735035716	-3.0112019796220117	AAAGAATGCCAGACATT
chr17	44536750	44536751	chr17:44536751:C:T	rs9903356	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr17	44850831	44850832	chr17:44850832:C:T	rs117979815	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr17	44907923	44907924	chr17:44907924:C:G	rs530101302	C	G	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr17	45249860	45249861	chr17:45249861:A:G	rs149532487	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr17	45581453	45581454	chr17:45581454:C:G	rs1393433114	C	G	.	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr17	45770007	45770008	chr17:45770008:G:A	rs62055928	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr17	45856212	45856213	chr17:45856213:C:A	rs62054832	C	A	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr17	45896131	45896132	chr17:45896132:T:G	rs4792891	T	G	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr17	45930734	45930735	chr17:45930735:T:C	rs8078967	T	C	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr17	46013279	46013280	chr17:46013280:A:G	rs12150170	A	G	G	Sox3.mouse_HMG_3	5	1	-	0.6572716023420002	0.6572716023420002	ACTGATTGACATTCCTG
chr17	46040030	46040031	chr17:46040031:A:G	rs10514897	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr17	46151706	46151707	chr17:46151707:G:A	rs77829802	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr17	46264960	46264961	chr17:46264961:T:G	rs2696437	T	G	.	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr17	46264969	46264970	chr17:46264970:C:T	rs185438302	C	T	.	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr17	46283764	46283765	chr17:46283765:C:A	rs75265619	C	A	.	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr17	46812336	46812337	chr17:46812337:C:T	rs3916033	C	T	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr17	47205514	47205515	chr17:47205515:G:A	rs907531633	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr17	47211728	47211729	chr17:47211729:G:A	rs59349147	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr17	47253392	47253393	chr17:47253393:G:A	rs7208170	G	A	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr17	47287252	47287253	chr17:47287253:A:G	rs13306478	A	G	A	Sox3.mouse_HMG_3	1	1	+	4.727561315238884	1.6274313788015917	TATGGTTTCTATTCATG
chr17	47782660	47782661	chr17:47782661:G:T	rs62076097	G	T	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr17	47843141	47843142	chr17:47843142:C:T	rs16948722	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr17	48023504	48023505	chr17:48023505:C:T	rs9914123	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr17	48128652	48128653	chr17:48128653:C:T	rs758999	C	T	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr17	48153699	48153700	chr17:48153700:G:C	rs117045792	G	C	G	Sox3.mouse_HMG_3	3	1	-	1.5944075848780683	8.343898320583119	GATCAATGCCTGTCAAA
chr17	48439862	48439863	chr17:48439863:T:C	rs12452277	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr17	48465465	48465466	chr17:48465466:C:G	rs8073618	C	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr17	48628432	48628433	chr17:48628433:C:T	rs76457348	C	T	C	Sox3.mouse_HMG_3	7	1	+	1.2645676499014789	6.667978829878796	AATGAATCACAGTTAAG
chr17	48691706	48691707	chr17:48691707:C:T	rs12941331	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr17	48925858	48925859	chr17:48925859:G:T	rs957557	G	T	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr17	48987728	48987729	chr17:48987729:G:T	rs4794012	G	T	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr17	49345147	49345148	chr17:49345148:C:T	rs35073649	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr17	49345148	49345149	chr17:49345149:G:A	rs112103192	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr17	49559291	49559292	chr17:49559292:C:G	rs60307484	C	G	G	Sox3.mouse_HMG_3	16	1	-	1.61381068713826	-0.44004556853904075	CATGACTTCTAGTTATG
chr17	49746691	49746692	chr17:49746692:C:T	rs145912572	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr17	49747242	49747243	chr17:49747243:A:G	rs2120106	A	G	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr17	49813838	49813839	chr17:49813839:C:T	rs7213050	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr17	49863259	49863260	chr17:49863260:C:A	rs3848456	C	A	C	Sox3.mouse_HMG_3	10	1	-	3.0006074570242873	2.857506613383614	AATAAATGCTGGTCATT
chr17	49915688	49915689	chr17:49915689:T:C	rs9904213	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr17	49915732	49915733	chr17:49915733:T:C	rs890399	T	C	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr17	49981279	49981280	chr17:49981280:G:A	rs11653481	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr17	50164370	50164371	chr17:50164371:C:T	rs2586471	C	T	C	Sox3.mouse_HMG_3	8	1	-	-1.3661171862075416	-1.989233833385355	GGTGACTGGTAGGCAGG
chr17	50196541	50196542	chr17:50196542:A:C	rs17639446	A	C	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr17	50459076	50459077	chr17:50459077:T:C	rs17641232	T	C	t	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr17	50475093	50475094	chr17:50475094:C:G	rs58383597	C	G	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr17	50689203	50689204	chr17:50689204:A:G	rs976171154	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.173092607762425	-0.9270373286748668	AATGAAAGATATTTAAA
chr17	50885558	50885559	chr17:50885559:T:C	rs12150160	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr17	50943493	50943494	chr17:50943494:G:A	rs9907934	G	A	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr17	51228455	51228456	chr17:51228456:T:C	rs75846662	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr17	51290775	51290776	chr17:51290776:A:G	rs12948421	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr17	51496808	51496809	chr17:51496809:T:C	rs4502265	T	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr17	51594070	51594071	chr17:51594071:A:G	rs11651907	A	G	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr17	51618025	51618026	chr17:51618026:T:C	rs7207083	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr17	51682607	51682608	chr17:51682608:C:T	rs1271307	C	T	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr17	51914475	51914476	chr17:51914476:G:A	rs188028	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr17	52221702	52221703	chr17:52221703:A:G	rs34826545	A	G	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr17	52221718	52221719	chr17:52221719:G:A	rs35824492	G	A	G	Sox3.mouse_HMG_3	9	1	-	1.5978597573330844	1.6054964343248304	AATGAAATCCTTTCATC
chr17	52666427	52666428	chr17:52666428:G:C	rs34286467	G	C	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr17	52833339	52833340	chr17:52833340:T:C	rs56889205	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr17	53142100	53142101	chr17:53142101:C:G	rs807139	C	G	C	Sox3.mouse_HMG_3	9	1	+	1.7482634629017741	-3.5916655444727885	AATGAATGCCCTTCTGG
chr17	53193285	53193286	chr17:53193286:A:G	rs113164396	A	G	A	Sox3.mouse_HMG_3	7	1	-	2.457789526016115	-2.9456216539612052	GGTGAAATGTAATCATA
chr17	53236992	53236993	chr17:53236993:C:T	rs2222372	C	T	C	Sox3.mouse_HMG_3	8	1	+	10.217298475928105	9.955178731012	AATGAATGCTATTTATT
chr17	53437413	53437414	chr17:53437414:T:G	rs1502501	T	G	G	Sox3.mouse_HMG_3	1	1	-	0.31565601926079756	-3.8612034945950997	GATGGGTGGCACTCATG
chr17	53456216	53456217	chr17:53456217:G:C	rs550933477	G	C	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr17	53607785	53607786	chr17:53607786:T:A	rs77064896	T	A	T	Sox3.mouse_HMG_3	10	1	-	1.0054979125417711	-5.745553572639699	AATGCATGGCATGCAGT
chr17	53749149	53749150	chr17:53749150:T:C	rs4794459	T	C	T	Sox3.mouse_HMG_3	5	1	-	2.4627501695549165	-4.026084752515947	AATCAATTGCACTCAAA
chr17	54980353	54980354	chr17:54980354:G:A	rs9898020	G	A	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr17	55038114	55038115	chr17:55038115:T:C	rs17210015	T	C	C	Sox3.mouse_HMG_3	11	1	+	4.240817633838134	-1.8437931922638109	TATGTCTTTTATTCATG
chr17	55040892	55040893	chr17:55040893:C:T	rs190318602	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr17	55302449	55302450	chr17:55302450:C:T	rs4794562	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr17	55387261	55387262	chr17:55387262:A:T	rs7223336	A	T	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr17	55497012	55497013	chr17:55497013:G:A	rs9891348	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr17	55623922	55623923	chr17:55623923:G:A	rs9892595	G	A	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr17	56107354	56107355	chr17:56107355:A:G	rs9913362	A	G	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr17	56173913	56173914	chr17:56173914:C:G	rs72831971	C	G	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr17	56176956	56176957	chr17:56176957:T:C	rs16956842	T	C	C	Sox3.mouse_HMG_3	9	1	+	2.4866903367956272	2.4790536598038813	AAAGAATGTTACTCAAT
chr17	56291524	56291525	chr17:56291525:T:G	rs116362869	T	G	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr17	56292146	56292147	chr17:56292147:G:C	rs16957053	G	C	C	Sox3.mouse_HMG_3	13	1	-	0.6556698206406524	-5.951590789821368	TTTCCATGCCAGTCATG
chr17	56299014	56299015	chr17:56299015:A:T	rs62073044	A	T	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr17	56795077	56795078	chr17:56795078:T:C	rs72837329	T	C	C	Sox3.mouse_HMG_3	6	1	+	-0.40656842643361	-7.014519067974408	GATGAATCCTGTTCCTG
chr17	56806722	56806723	chr17:56806723:A:T	rs72837354	A	T	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr17	57009446	57009447	chr17:57009447:T:C	rs4794679	T	C	T	Sox3.mouse_HMG_3	11	1	+	-0.6781705557559607	-6.762781381857906	GATGGAGGCTATGCATG
chr17	57052251	57052252	chr17:57052252:C:A	rs7218578	C	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr17	57181953	57181954	chr17:57181954:G:C	rs9909220	G	C	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr17	57263867	57263868	chr17:57263868:G:A	rs62058026	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr17	57350374	57350375	chr17:57350375:G:A	rs16958250	G	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr17	57350399	57350400	chr17:57350400:G:C	rs16958255	G	C	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr17	57358018	57358019	chr17:57358019:C:T	rs80113802	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr17	57440616	57440617	chr17:57440617:A:G	chr17:57440617:A:G	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr17	57473312	57473313	chr17:57473313:T:C	rs2586231	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr17	57473472	57473473	chr17:57473473:A:G	rs2586232	A	G	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr17	57739458	57739459	chr17:57739459:G:A	rs62060706	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr17	57916610	57916611	chr17:57916611:C:T	rs142489310	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr17	57916632	57916633	chr17:57916633:T:A	rs182177639	T	A	T	Sox3.mouse_HMG_3	16	1	+	2.134372533837741	3.2853615935902374	GATGAAAGGTAATCAGT
chr17	58080255	58080256	chr17:58080256:G:A	rs8065435	G	A	N	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr17	58091797	58091798	chr17:58091798:A:G	rs145782652	A	G	.	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr17	58165387	58165388	chr17:58165388:C:T	rs2052087	C	T	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr17	58239915	58239916	chr17:58239916:T:C	rs2240263	T	C	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr17	58414604	58414605	chr17:58414605:T:C	rs2680687	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr17	58516835	58516836	chr17:58516836:C:T	rs3744109	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr17	58822208	58822209	chr17:58822209:A:T	rs972571	A	T	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr17	58822648	58822649	chr17:58822649:G:A	rs11657850	G	A	G	Sox3.mouse_HMG_3	10	1	-	2.9129854682635448	2.9129854682635448	CATGAATTATCTTAATA
chr17	59048067	59048068	chr17:59048068:C:G	rs117864031	C	G	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr17	59328079	59328080	chr17:59328080:C:A	rs565316007	C	A	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr17	59369802	59369803	chr17:59369803:C:G	rs58287933	C	G	G	Sox3.mouse_HMG_3	6	1	-	1.474929786991437	1.6180306306321104	AATAAAGGTCAGTCAAA
chr17	59423821	59423822	chr17:59423822:A:T	rs117262092	A	T	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr17	59441433	59441434	chr17:59441434:G:A	rs116933436	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr17	59498906	59498907	chr17:59498907:T:C	rs73993916	T	C	T	Sox3.mouse_HMG_3	5	1	-	0.5846661414577036	-5.904168780613162	AGTGAATGCCTTGCATT
chr17	59528111	59528112	chr17:59528112:G:A	rs112649819	G	A	G	Sox3.mouse_HMG_3	9	1	-	0.04782387903037799	0.055460556022123964	TCTGAATGACGGACATG
chr17	59618630	59618631	chr17:59618631:A:G	rs12944716	A	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr17	59668745	59668746	chr17:59668746:A:G	rs2272411	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr17	59756333	59756334	chr17:59756334:A:G	rs114012303	A	G	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr17	59837232	59837233	chr17:59837233:G:T	rs7218748	G	T	G	Sox3.mouse_HMG_3	9	1	+	2.707683867051294	8.055249551417603	AGTGAATTTGAGTCAGT
chr17	59849266	59849267	chr17:59849267:A:C	rs112591260	A	C	A	Sox3.mouse_HMG_3	8	1	-	4.28796181647736	4.9928642300713975	TAGGGATTTTATTCATA
chr17	59889906	59889907	chr17:59889907:T:C	rs111282327	T	C	t	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr17	60668573	60668574	chr17:60668574:C:T	rs117255983	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr17	60972174	60972175	chr17:60972175:C:T	rs75948634	C	T	C	Sox3.mouse_HMG_3	16	1	-	-0.7673591877954953	-0.8032996442480209	TATTAATGGCTTACATG
chr17	61002667	61002668	chr17:61002668:G:A	rs78039895	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr17	61361262	61361263	chr17:61361263:G:C	rs57878467	G	C	G	Sox3.mouse_HMG_3	3	1	+	1.1099475229849283	-5.639543212720123	GGAGAATTCCAGTTATG
chr17	61497018	61497019	chr17:61497019:T:A	rs4968437	T	A	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr17	61497236	61497237	chr17:61497237:C:T	rs1069	C	T	C	Sox3.mouse_HMG_3	1	1	+	3.453113985938516	4.659896691605315	TCGGAATTATATTCAGA
chr17	61504901	61504902	chr17:61504902:A:G	rs77184725	A	G	A	Sox3.mouse_HMG_3	15	1	-	0.4141417865201009	-4.300251625194967	CTTGCATTCCAATCATA
chr17	61662760	61662761	chr17:61662761:A:C	rs7219555	A	C	A	Sox3.mouse_HMG_3	6	1	-	1.0559318803395024	-5.695119604841968	ATAGATTGATAGTCATA
chr17	62193477	62193478	chr17:62193478:G:C	rs73327612	G	C	G	Sox3.mouse_HMG_3	11	1	+	0.8848849701664048	-3.765289755639733	GTTGCATTGCAGTCTTG
chr17	62453967	62453968	chr17:62453968:A:C	rs7218749	A	C	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr17	62618924	62618925	chr17:62618925:T:C	rs2465432	T	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr17	62643000	62643001	chr17:62643001:C:T	rs8078112	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr17	62728342	62728343	chr17:62728343:A:G	rs9891305	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr17	62728351	62728352	chr17:62728352:C:T	rs9891513	C	T	T	Sox3.mouse_HMG_3	14	1	-	8.389709206071284	14.771655372498198	ATTGAATGTCATTCGTG
chr17	62782859	62782860	chr17:62782860:T:C	rs149631508	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr17	62805355	62805356	chr17:62805356:G:C	rs9902932	G	C	.	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr17	62915672	62915673	chr17:62915673:A:T	rs13339687	A	T	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr17	63040149	63040150	chr17:63040150:G:T	rs16946732	G	T	G	Sox3.mouse_HMG_3	9	1	-	2.557791626925058	-3.49642699758326	ACTGCATTACAGTCATC
chr17	63274036	63274037	chr17:63274037:A:G	rs12150068	A	G	A	Sox3.mouse_HMG_3	3	1	+	3.0724695549876717	8.854034442516902	GTTACATGTTATTCATG
chr17	63850413	63850414	chr17:63850414:T:C	rs2584615	T	C	t	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr17	63990277	63990278	chr17:63990278:T:C	rs2017476	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr17	64020131	64020132	chr17:64020132:C:T	rs917556	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr17	64230541	64230542	chr17:64230542:C:G	rs4968615	C	G	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr17	64240638	64240639	chr17:64240639:A:G	rs9915054	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr17	64620045	64620046	chr17:64620046:C:G	rs16947930	C	G	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr17	64653951	64653952	chr17:64653952:C:T	rs75427287	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr17	64784808	64784809	chr17:64784809:C:T	rs8077473	C	T	.	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr17	65005295	65005296	chr17:65005296:A:G	rs34476326	A	G	G	Sox3.mouse_HMG_3	10	1	+	-0.4263973488965236	-7.034347990437321	TGTGGATGCCATGCAGG
chr17	65028653	65028654	chr17:65028654:G:C	rs182551215	G	C	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr17	65054755	65054756	chr17:65054756:G:A	rs3972203	G	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr17	65123762	65123763	chr17:65123763:A:G	rs9899628	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr17	65321379	65321380	chr17:65321380:A:C	rs8077158	A	C	c	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr17	65358987	65358988	chr17:65358988:T:C	rs73998119	T	C	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr17	65456227	65456228	chr17:65456228:A:G	rs189817174	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr17	65536056	65536057	chr17:65536057:A:G	rs11079570	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr17	65553369	65553370	chr17:65553370:A:C	rs3923086	A	C	A	Sox3.mouse_HMG_3	2	1	-	6.726704767053799	-0.022275194817805932	TTTGAATGCTATTTAAG
chr17	65622639	65622640	chr17:65622640:A:G	rs541159925	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr17	65662750	65662751	chr17:65662751:G:A	rs4791143	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr17	65684947	65684948	chr17:65684948:C:T	rs11657973	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr17	65788223	65788224	chr17:65788224:A:G	chr17:65788224:A:G	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr17	65885772	65885773	chr17:65885773:G:T	rs4291948	G	T	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr17	65941593	65941594	chr17:65941594:T:C	rs12943810	T	C	t	Sox3.mouse_HMG_3	2	1	+	2.6082161324711888	-3.9976629857597437	TCTGTATTCCATTCAAC
chr17	65961575	65961576	chr17:65961576:G:C	rs77905043	G	C	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr17	65990693	65990694	chr17:65990694:G:C	rs9907638	G	C	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr17	66190869	66190870	chr17:66190870:C:T	rs9902706	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr17	66235656	66235657	chr17:66235657:T:C	rs17769776	T	C	T	Sox3.mouse_HMG_3	16	1	+	3.1135868569133134	2.2466601174410346	TTGGAATTCTAGTCAAT
chr17	66305536	66305537	chr17:66305537:T:C	rs4520871	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr17	66348669	66348670	chr17:66348670:C:T	rs72846607	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr17	66411819	66411820	chr17:66411820:C:G	rs1015240978	C	G	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr17	66411826	66411827	chr17:66411827:T:G	rs4486944	T	G	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr17	66422450	66422451	chr17:66422451:G:A	rs7225324	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr17	66423230	66423231	chr17:66423231:G:A	rs16959238	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr17	66790567	66790568	chr17:66790568:G:A	rs9913128	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr17	66881704	66881705	chr17:66881705:C:G	rs9909222	C	G	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr17	66905519	66905520	chr17:66905520:A:T	rs1395296016	A	T	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr17	66944579	66944580	chr17:66944580:C:A	rs1008366	C	A	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr17	66944612	66944613	chr17:66944613:G:C	rs11652396	G	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr17	67280093	67280094	chr17:67280094:T:C	rs8076324	T	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr17	67335551	67335552	chr17:67335552:C:T	rs9904885	C	T	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr17	67421930	67421931	chr17:67421931:T:C	rs1042673153	T	C	T	Sox3.mouse_HMG_3	5	1	-	0.9974354890377726	-5.4913994330330915	TCTCAATGTTATTCCTG
chr17	67515433	67515434	chr17:67515434:C:T	rs9908926	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr17	67543029	67543030	chr17:67543030:G:A	rs7223728	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr17	67552423	67552424	chr17:67552424:G:T	rs2916133	G	T	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr17	67688736	67688737	chr17:67688737:A:G	rs2642051	A	G	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr17	67713676	67713677	chr17:67713677:C:T	rs8068862	C	T	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr17	67713682	67713683	chr17:67713683:T:C	rs115980562	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr17	67785820	67785821	chr17:67785821:T:C	rs59145075	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr17	67828311	67828312	chr17:67828312:A:T	rs28601724	A	T	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr17	67992920	67992921	chr17:67992921:A:G	rs190313223	A	G	A	Sox3.mouse_HMG_3	2	1	-	2.4424061109087045	-4.163473007322227	CATGAATGGGATTTAGA
chr17	67992931	67992932	chr17:67992932:T:C	rs28368756	T	C	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr17	68053539	68053540	chr17:68053540:C:T	rs150237245	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr17	68374263	68374264	chr17:68374264:T:C	rs7211973	T	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr17	68388992	68388993	chr17:68388993:G:C	rs72841848	G	C	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr17	68394076	68394077	chr17:68394077:T:C	rs60904747	T	C	T	Sox3.mouse_HMG_3	15	1	+	1.6337225106231534	-3.080670901091915	GGTGGATTTTGTTCATG
chr17	68657525	68657526	chr17:68657526:A:G	rs7225388	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr17	68661494	68661495	chr17:68661495:G:A	rs17673578	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr17	68665366	68665367	chr17:68665367:C:T	rs17673884	C	T	T	Sox3.mouse_HMG_3	11	1	-	3.521486236752856	-1.1286884890532822	ACTGAATGCCAGTTAAG
chr17	68861913	68861914	chr17:68861914:C:T	rs1838101	C	T	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr17	68988287	68988288	chr17:68988288:T:C	rs1541469	T	C	c	Sox3.mouse_HMG_3	2	1	+	2.37529558733348	-4.230583530897452	ACTAAATGGTACTCATA
chr17	69007143	69007144	chr17:69007144:G:A	rs4548939	G	A	g	Sox3.mouse_HMG_3	16	1	+	-0.4518200167645139	-0.4877604732170395	GATGAAGGCCAGGCACG
chr17	69047827	69047828	chr17:69047828:C:T	rs144076840	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr17	69412789	69412790	chr17:69412790:G:C	rs2592209	G	C	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr17	69526761	69526762	chr17:69526762:C:T	rs3729922	C	T	C	Sox3.mouse_HMG_3	0	1	+	0.9954303322074085	2.4503009775442712	CATGAATTTCTTCCATC
chr17	69526777	69526778	chr17:69526778:C:T	rs2074030	C	T	C	Sox3.mouse_HMG_3	16	1	+	0.9954303322074085	1.8623570716796873	CATGAATTTCTTCCATC
chr17	69573971	69573972	chr17:69573972:A:G	rs1966327	A	G	G	Sox3.mouse_HMG_3	5	1	+	4.111608735179539	-2.3772261868913236	AATAAAAGATATTCATT
chr17	69575231	69575232	chr17:69575232:G:A	rs12941110	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr17	69709417	69709418	chr17:69709418:C:T	rs2905363	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr17	69757803	69757804	chr17:69757804:G:A	rs74799989	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr17	69757813	69757814	chr17:69757814:T:A	rs59156067	T	A	T	Sox3.mouse_HMG_3	8	1	-	2.85287150047205	2.771085734055826	TATGAGTGAGAGTCAAG
chr17	69764623	69764624	chr17:69764624:G:A	rs757531	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr17	69870524	69870525	chr17:69870525:A:C	rs974654	A	C	A	Sox3.mouse_HMG_3	5	1	+	1.0979930014587642	-5.509447663019946	AATGCAATTTATTCAAA
chr17	70073207	70073208	chr17:70073208:T:C	rs8070382	T	C	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr17	70076144	70076145	chr17:70076145:G:C	rs8080091	G	C	G	Sox3.mouse_HMG_3	0	1	+	5.032058348952568	3.3082668498159498	GATGAATTTTGATCATG
chr17	70099477	70099478	chr17:70099478:G:T	rs724824	G	T	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr17	70099481	70099482	chr17:70099482:T:G	rs724825	T	G	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr17	70197495	70197496	chr17:70197496:A:G	rs1877741	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr17	70197502	70197503	chr17:70197503:C:T	rs1877742	C	T	C	Sox3.mouse_HMG_3	2	1	+	2.3855286018369	8.991407720067832	CACGAATTCTACTCATT
chr17	70205914	70205915	chr17:70205915:C:T	rs1473905	C	T	C	Sox3.mouse_HMG_3	7	1	-	-0.3820313170579579	-6.935580031715684	CCAGAATGCCAGACATA
chr17	70232624	70232625	chr17:70232625:T:C	rs236543	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr17	70304494	70304495	chr17:70304495:C:A	rs312707	C	A	C	Sox3.mouse_HMG_3	0	1	-	0.5858409051357343	0.3169200513359802	GGTGAATTGAATTCCAA
chr17	70314022	70314023	chr17:70314023:A:G	rs17778044	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr17	70390196	70390197	chr17:70390197:A:G	rs8065569	A	G	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr17	71072707	71072708	chr17:71072708:A:G	rs7208880	A	G	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr17	71361998	71361999	chr17:71361999:C:T	rs9896331	C	T	C	Sox3.mouse_HMG_3	10	1	+	1.1981380869945613	1.1981380869945613	ATTGAATTAACTTCATG
chr17	71657917	71657918	chr17:71657918:G:A	rs79710274	G	A	g	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr17	71872790	71872791	chr17:71872791:T:C	rs8073956	T	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr17	71935332	71935333	chr17:71935333:G:T	rs16977017	G	T	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr17	72052761	72052762	chr17:72052762:A:G	rs16977050	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr17	72135501	72135502	chr17:72135502:G:T	rs720244	G	T	G	Sox3.mouse_HMG_3	9	1	-	2.1317784310439114	-3.922440193464408	GATGTAGGACATTCAGA
chr17	72137035	72137036	chr17:72137036:G:A	rs759499	G	A	G	Sox3.mouse_HMG_3	0	1	+	1.5106542407757027	0.6853703396293578	GTTCAATGGCAGTTATG
chr17	72467851	72467852	chr17:72467852:C:A	rs11653824	C	A	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr17	72516032	72516033	chr17:72516033:T:C	rs78617599	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr17	72525319	72525320	chr17:72525320:A:G	rs8074834	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr17	72644686	72644687	chr17:72644687:G:C	rs4072715	G	C	G	Sox3.mouse_HMG_3	9	1	-	6.498339453754461	1.1584104463798977	CTTGAGTTTCATTCATA
chr17	72691605	72691606	chr17:72691606:T:C	rs3890843	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr17	72729981	72729982	chr17:72729982:C:T	rs7221363	C	T	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr17	72757346	72757347	chr17:72757347:T:C	rs76692316	T	C	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr17	72805636	72805637	chr17:72805637:C:A	rs72847905	C	A	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr17	72805670	72805671	chr17:72805671:C:T	rs143904052	C	T	c	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr17	72946843	72946844	chr17:72946844:T:G	rs9675102	T	G	T	Sox3.mouse_HMG_3	7	1	+	1.1564758407037923	2.0065087829338646	AATGTATTGCATTCCAT
chr17	72967947	72967948	chr17:72967948:G:A	rs2934226	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr17	73013912	73013913	chr17:73013913:G:A	rs1026210872	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr17	73067685	73067686	chr17:73067686:T:C	rs149799620	T	C	T	Sox3.mouse_HMG_3	10	1	-	2.0344536450436896	-4.573496996497108	TGTGATTTGTATTAATA
chr17	73067691	73067692	chr17:73067692:T:C	rs9674770	T	C	T	Sox3.mouse_HMG_3	4	1	-	2.0344536450436896	-4.348363082950379	TGTGATTTGTATTAATA
chr17	73085744	73085745	chr17:73085745:T:G	rs147118990	T	G	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr17	73166640	73166641	chr17:73166641:A:G	rs78356160	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr17	73170561	73170562	chr17:73170562:A:G	rs7220818	A	G	A	Sox3.mouse_HMG_3	6	1	-	2.5515653520654453	-4.056385289475352	TCTGAATTGGACTCATG
chr17	73474911	73474912	chr17:73474912:C:T	rs11651551	C	T	c	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr17	73549631	73549632	chr17:73549632:G:A	rs55868250	G	A	G	Sox3.mouse_HMG_3	4	1	+	0.9382895929926929	7.321106320986761	GATGGATGGGAGTCAGC
chr17	73691428	73691429	chr17:73691429:C:T	rs17836845	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr17	73738772	73738773	chr17:73738773:T:G	rs34087957	T	G	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr17	73749337	73749338	chr17:73749338:A:G	rs28465234	A	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr17	73814342	73814343	chr17:73814343:G:C	rs899587	G	C	G	Sox3.mouse_HMG_3	9	1	+	7.55313269665509	12.893061704029655	CGTGAATTTGATTCATG
chr17	73901795	73901796	chr17:73901796:C:T	rs12451974	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr17	74058484	74058485	chr17:74058485:C:T	rs7225721	C	T	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr17	74110837	74110838	chr17:74110838:T:C	rs60701790	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr17	74210414	74210415	chr17:74210415:G:A	rs549565024	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr17	74269718	74269719	chr17:74269719:T:G	rs34280702	T	G	T	Sox3.mouse_HMG_3	6	1	+	2.353914249583763	-4.397137235597707	AATGACTTTTTTTCATT
chr17	74527084	74527085	chr17:74527085:T:C	rs10512596	T	C	C	Sox3.mouse_HMG_3	15	1	-	1.4711151257026849	0.6123337788462643	GAGGAAGTGCATTCAAT
chr17	74527119	74527120	chr17:74527120:T:C	rs783250	T	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr17	74675749	74675750	chr17:74675750:C:T	rs62084864	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr17	74866686	74866687	chr17:74866687:C:T	rs509911	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr17	74949982	74949983	chr17:74949983:A:G	rs1994720	A	G	G	Sox3.mouse_HMG_3	0	1	+	8.091194112963949	8.916478014110293	AATGGATTGCATTCAGG
chr17	75079845	75079846	chr17:75079846:C:T	rs12945706	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr17	75274077	75274078	chr17:75274078:T:C	rs733301	T	C	T	Sox3.mouse_HMG_3	2	1	+	2.4163290713105727	-4.189550046920356	AATTAATTTCATTCTTT
chr17	75518308	75518309	chr17:75518309:T:C	rs73362237	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr17	75587595	75587596	chr17:75587596:A:G	rs62089216	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr17	75776390	75776391	chr17:75776391:G:A	rs79695954	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr17	75776416	75776417	chr17:75776417:T:C	rs762633876	T	C	T	Sox3.mouse_HMG_3	0	1	-	1.6016919252950952	2.4269758264414394	AATGGTTTTCATTCAAA
chr17	75780104	75780105	chr17:75780105:T:C	rs73352125	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr17	75845378	75845379	chr17:75845379:C:T	rs116858367	C	T	C	Sox3.mouse_HMG_3	7	1	-	-1.4862973005674147	-8.039846015225141	GAGGAATGGCAGCCCTG
chr17	75959533	75959534	chr17:75959534:C:G	rs79304471	C	G	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr17	76013956	76013957	chr17:76013957:T:C	rs2665971	T	C	C	Sox3.mouse_HMG_3	1	1	-	0.3900862129012934	-2.7100437235360006	AAGGCATGGCAGTCAGG
chr17	76049142	76049143	chr17:76049143:C:A	rs2598434	C	A	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr17	76230378	76230379	chr17:76230379:T:C	rs8074389	T	C	C	Sox3.mouse_HMG_3	6	1	+	3.3009092701919207	-3.307041371348877	TAAAAATGTCAGTCATC
chr17	76234361	76234362	chr17:76234362:T:C	rs12232523	T	C	T	Sox3.mouse_HMG_3	4	1	+	2.353914249583762	2.210813405943089	AATGTATTTTCTTCATT
chr17	76252539	76252540	chr17:76252540:A:G	rs73350331	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr17	76304213	76304214	chr17:76304214:C:T	rs346790	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr17	76304234	76304235	chr17:76304235:A:T	rs73996305	A	T	A	Sox3.mouse_HMG_3	5	1	+	7.073777382538403	0.46633671805969223	GATGCATGTTATTCACA
chr17	76458986	76458987	chr17:76458987:C:T	rs12951513	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr17	76519917	76519918	chr17:76519918:C:T	rs67300820	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr17	76636017	76636018	chr17:76636018:T:G	rs8067106	T	G	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr17	76668771	76668772	chr17:76668772:A:G	rs7221855	A	G	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr17	76858302	76858303	chr17:76858303:C:T	rs181181555	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr17	76997523	76997524	chr17:76997524:T:C	rs2411032	T	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr17	77018064	77018065	chr17:77018065:T:C	rs72880096	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr17	77089571	77089572	chr17:77089572:A:G	rs16969661	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.2519755543830666	-3.4624178573320017	ATTGAATGAAAGACATG
chr17	77165095	77165096	chr17:77165096:A:T	rs55720361	A	T	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr17	77252539	77252540	chr17:77252540:G:A	rs9893702	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr17	77252570	77252571	chr17:77252571:A:G	rs9896454	A	G	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr17	77252582	77252583	chr17:77252583:T:C	rs4789421	T	C	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr17	77411243	77411244	chr17:77411244:A:G	rs539495930	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr17	77520728	77520729	chr17:77520729:C:T	rs4789457	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr17	77635737	77635738	chr17:77635738:A:G	rs569289187	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr17	77764504	77764505	chr17:77764505:T:C	rs7214910	T	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr17	77831780	77831781	chr17:77831781:C:T	rs34440599	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr17	77920228	77920229	chr17:77920229:T:G	rs59317700	T	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr17	77999788	77999789	chr17:77999789:G:A	rs111785706	G	A	G	Sox3.mouse_HMG_3	10	1	+	0.475449988721118	7.083400630261915	GCTGAATGCCGTTCCTT
chr17	78390677	78390678	chr17:78390678:C:G	rs139447178	C	G	C	Sox3.mouse_HMG_3	11	1	-	4.498025261011626	-0.15214946479451164	TATGAATCCTAGTCCTG
chr17	78541481	78541482	chr17:78541482:A:G	rs7210821	A	G	g	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr17	78620464	78620465	chr17:78620465:T:C	rs4796798	T	C	C	Sox3.mouse_HMG_3	0	1	-	4.669655267896737	5.494939169043081	AATGAATAATGTTCATG
chr17	78682857	78682858	chr17:78682858:T:C	rs9895721	T	C	T	Sox3.mouse_HMG_3	2	1	+	-0.2553496473163178	-6.8612287655472475	CATGCAGGGTATTCAGT
chr17	79006680	79006681	chr17:79006681:G:A	rs12450407	G	A	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr17	79035758	79035759	chr17:79035759:T:A	rs71385995	T	A	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr17	79042655	79042656	chr17:79042656:G:A	rs78472835	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr17	79042664	79042665	chr17:79042665:G:A	rs80038662	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr17	79097685	79097686	chr17:79097686:T:C	rs58352742	T	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr17	79139478	79139479	chr17:79139479:G:C	rs12944841	G	C	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr17	79334311	79334312	chr17:79334312:T:C	rs8082289	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr17	79482000	79482001	chr17:79482001:C:G	rs79272600	C	G	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr17	79546168	79546169	chr17:79546169:T:G	rs11077444	T	G	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr17	79546187	79546188	chr17:79546188:T:C	rs11869391	T	C	T	Sox3.mouse_HMG_3	2	1	+	-0.23661318679364785	-6.842492305024578	GATGAACGACAACCATG
chr17	79546203	79546204	chr17:79546204:A:G	rs11871672	A	G	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr17	79565576	79565577	chr17:79565577:T:A	rs1023504652	T	A	A	Sox3.mouse_HMG_3	5	1	-	0.5074172645627073	-6.100023399916004	GATCAATTGCGGTCAGG
chr17	79904663	79904664	chr17:79904664:A:G	rs1285276	A	G	A	Sox3.mouse_HMG_3	5	1	-	2.1264671479107484	2.1264671479107484	CATGATTGGCAGCCATT
chr17	80106639	80106640	chr17:80106640:A:G	rs535450439	A	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr17	80106644	80106645	chr17:80106645:T:C	rs8068051	T	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr17	80138077	80138078	chr17:80138078:T:C	rs2361710	T	C	C	Sox3.mouse_HMG_3	6	1	+	1.894549665294443	-4.713400976246356	GATTTATGTCATTCAGA
chr17	80187283	80187284	chr17:80187284:C:T	rs767078968	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr17	80648134	80648135	chr17:80648135:T:C	rs190972123	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr17	80679525	80679526	chr17:80679526:T:C	rs62069694	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr17	80689608	80689609	chr17:80689609:G:A	rs186729974	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr17	80836443	80836444	chr17:80836444:C:T	rs555374012	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr17	80918122	80918123	chr17:80918123:A:G	rs4969303	A	G	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr17	81082652	81082653	chr17:81082653:C:T	rs4969245	C	T	C	Sox3.mouse_HMG_3	3	1	-	0.43195804100003654	-5.349606846529196	GAGGAAAGGGATTCATG
chr17	81313456	81313457	chr17:81313457:C:G	rs7219477	C	G	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr17	81335433	81335434	chr17:81335434:C:T	rs61260509	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr17	81384877	81384878	chr17:81384878:A:G	rs7218794	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr17	82401865	82401866	chr17:82401866:C:T	rs8069397	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr17	82587433	82587434	chr17:82587434:C:T	rs140666868	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr17	82659986	82659987	chr17:82659987:G:A	rs971816384	G	A	g	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr17	82902374	82902375	chr17:82902375:G:T	rs7212980	G	T	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr17	82943143	82943144	chr17:82943144:G:A	rs1044661	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr17	82943159	82943160	chr17:82943160:C:G	rs8180	C	G	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr17	83001121	83001122	chr17:83001122:T:C	rs12601298	T	C	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr17	83092241	83092242	chr17:83092242:G:A	rs149237720	G	A	c	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr18	286037	286038	chr18:286038:G:C	rs62073534	G	C	G	Sox3.mouse_HMG_3	9	1	+	2.062799552608004	7.402728559982567	GATGAATGTGAGTGAGG
chr18	408054	408055	chr18:408055:T:G	rs75904203	T	G	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr18	427070	427071	chr18:427071:C:T	rs77645528	C	T	C	Sox3.mouse_HMG_3	7	1	-	2.2447128216983345	-4.308835892959394	GTGGAATGTTAGTCAGC
chr18	693827	693828	chr18:693828:A:C	rs2305996	A	C	C	Sox3.mouse_HMG_3	4	1	+	2.8033732067941504	-3.9471683013252363	CATCAATGATATCCATT
chr18	845247	845248	chr18:845248:A:G	rs191914855	A	G	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr18	845260	845261	chr18:845261:G:C	rs1275326	G	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr18	845273	845274	chr18:845274:T:C	chr18:845274:T:C	T	C	T	Sox3.mouse_HMG_3	5	1	-	2.7901522692464296	-3.698682652824435	GAGGAAGTTTAGTCATG
chr18	967404	967405	chr18:967405:T:G	rs66890461	T	G	T	Sox3.mouse_HMG_3	15	1	+	3.0759795386441002	-0.04661127244914154	TAAGAATTATAGACATT
chr18	1161054	1161055	chr18:1161055:T:A	rs10853206	T	A	T	Sox3.mouse_HMG_3	4	1	-	3.0401338607093833	-3.5673068037693287	AATAAATTTTAGTTATA
chr18	1395597	1395598	chr18:1395598:A:G	rs8085633	A	G	G	Sox3.mouse_HMG_3	1	1	+	1.575781891151973	-1.5243480452853175	TATGAATGAAAGCCAGG
chr18	1408485	1408486	chr18:1408486:T:C	rs141789040	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr18	1435570	1435571	chr18:1435571:T:A	rs73363178	T	A	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr18	1965468	1965469	chr18:1965469:G:A	rs7236577	G	A	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr18	2036366	2036367	chr18:2036367:A:G	rs141873543	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr18	2148418	2148419	chr18:2148419:T:C	rs538133	T	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr18	2301150	2301151	chr18:2301151:A:G	rs58059052	A	G	A	Sox3.mouse_HMG_3	15	1	-	4.4486961346959495	-0.2656972770191186	GATGAAATCTTTTCATA
chr18	2325495	2325496	chr18:2325496:T:C	rs551683219	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr18	2441759	2441760	chr18:2441760:T:C	rs9952282	T	C	T	Sox3.mouse_HMG_3	5	1	-	2.9251056620619114	-3.563729260008956	GATCAACTTCAGTCATG
chr18	2534978	2534979	chr18:2534979:C:A	rs150111946	C	A	C	Sox3.mouse_HMG_3	15	1	-	3.788334276665551	6.910925087758792	CTTGAATTCTATTCTGG
chr18	2565785	2565786	chr18:2565786:T:C	rs115660784	T	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr18	2848630	2848631	chr18:2848631:C:G	rs644288	C	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr18	2848638	2848639	chr18:2848639:G:A	rs115567374	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr18	3149312	3149313	chr18:3149313:T:C	rs80138448	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr18	3190818	3190819	chr18:3190819:A:G	rs28391113	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.7106573477418854	-4.7781775743289785	GATGGATCATATTCAGT
chr18	3246893	3246894	chr18:3246894:G:T	rs569051689	G	T	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr18	3281548	3281549	chr18:3281549:A:G	rs111512921	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr18	3281550	3281551	chr18:3281551:T:C	rs535439269	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr18	3281569	3281570	chr18:3281570:A:G	rs118046618	A	G	A	Sox3.mouse_HMG_3	5	1	+	2.091800754161145	-4.397034167909719	TTAGAATGGTTGTCATA
chr18	3447915	3447916	chr18:3447916:C:T	rs950378775	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr18	3447962	3447963	chr18:3447963:A:G	rs80144693	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr18	3456088	3456089	chr18:3456089:A:T	rs74669006	A	T	A	Sox3.mouse_HMG_3	6	1	-	4.216522853870387	-2.534528631311084	TTTGAATGATGGTCAGA
chr18	3463352	3463353	chr18:3463353:G:A	chr18:3463353:G:A	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr18	3512428	3512429	chr18:3512429:T:C	rs3786453	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr18	3512443	3512444	chr18:3512444:C:A	rs3786452	C	A	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr18	3528493	3528494	chr18:3528494:G:A	rs603464	G	A	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr18	3600187	3600188	chr18:3600188:A:G	rs548849	A	G	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr18	3605327	3605328	chr18:3605328:A:T	rs558020848	A	T	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr18	3623330	3623331	chr18:3623331:A:G	rs140366414	A	G	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr18	3742712	3742713	chr18:3742713:C:A	rs11873533	C	A	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr18	3998747	3998748	chr18:3998748:G:T	rs4624289	G	T	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr18	4068693	4068694	chr18:4068694:T:C	rs6506172	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr18	4385946	4385947	chr18:4385947:T:G	rs67970142	T	G	T	Sox3.mouse_HMG_3	12	1	+	2.8019392153419718	-3.5791356309799385	TATGAAAGCTTTTCAAG
chr18	4805700	4805701	chr18:4805701:T:G	rs35384609	T	G	G	Sox3.mouse_HMG_3	10	1	-	4.455644346240877	-2.295407138940596	AATGAATGATATTTACC
chr18	5500021	5500022	chr18:5500022:T:C	rs9960603	T	C	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr18	5772876	5772877	chr18:5772877:G:C	rs75037883	G	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr18	6056888	6056889	chr18:6056889:A:C	rs1784816	A	C	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr18	6135085	6135086	chr18:6135086:C:T	rs780549103	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr18	6396240	6396241	chr18:6396241:T:C	rs341231	T	C	.	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr18	6437844	6437845	chr18:6437845:C:T	rs1426333	C	T	.	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr18	6625790	6625791	chr18:6625791:T:C	rs62081423	T	C	t	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr18	6740785	6740786	chr18:6740786:T:C	rs8084747	T	C	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr18	6955676	6955677	chr18:6955677:G:T	rs949215	G	T	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr18	6983494	6983495	chr18:6983495:T:C	rs34578062	T	C	T	Sox3.mouse_HMG_3	15	1	-	2.412371499825886	1.5535901529694651	GATGAATGGTCGTCTAA
chr18	7011787	7011788	chr18:7011788:T:C	rs117761481	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr18	7022371	7022372	chr18:7022372:A:G	chr18:7022372:A:G	A	G	A	Sox3.mouse_HMG_3	10	1	+	1.5034772587571787	-5.104473382783619	TATGATAGCCAGTCAAG
chr18	7022495	7022496	chr18:7022496:T:C	rs591004	T	C	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr18	7022514	7022515	chr18:7022515:G:A	rs115052979	G	A	G	Sox3.mouse_HMG_3	13	1	-	4.7003228871316285	-1.9069377233303921	TATAAACGCCAGTCATA
chr18	7151120	7151121	chr18:7151121:A:G	rs76768139	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr18	7440891	7440892	chr18:7440892:T:A	rs524824	T	A	A	Sox3.mouse_HMG_3	6	1	+	2.8128936488658347	-3.9381578363156367	ACTGAATTTTTTTCAGA
chr18	7483013	7483014	chr18:7483014:C:G	rs68108042	C	G	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr18	7750491	7750492	chr18:7750492:C:T	rs370617366	C	T	C	Sox3.mouse_HMG_3	0	1	-	1.9929876500850243	1.1677037489386803	GAGGAATGTTATTCTAT
chr18	7885539	7885540	chr18:7885540:T:G	rs35416770	T	G	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr18	8050887	8050888	chr18:8050888:A:G	rs649598	A	G	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr18	8235953	8235954	chr18:8235954:T:A	rs8095111	T	A	T	Sox3.mouse_HMG_3	11	1	+	3.5415023606010188	-2.5431084655009255	TATGATTTCTATTCTTT
chr18	8340624	8340625	chr18:8340625:A:G	rs598149	A	G	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr18	8382147	8382148	chr18:8382148:A:G	rs78426883	A	G	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr18	8470777	8470778	chr18:8470778:T:C	rs3894269	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr18	8593919	8593920	chr18:8593920:T:G	rs11665618	T	G	C	Sox3.mouse_HMG_3	16	1	+	1.112434246400313	2.299363762605335	CCTGCATGACAGTCAAT
chr18	8654726	8654727	chr18:8654727:G:C	rs75527830	G	C	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr18	8858087	8858088	chr18:8858088:G:A	rs625719	G	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr18	8909042	8909043	chr18:8909043:A:G	rs13381129	A	G	G	Sox3.mouse_HMG_3	14	1	+	2.293174641913441	-4.0887715245134695	TTTGAAAACTATTCATG
chr18	8944904	8944905	chr18:8944905:A:G	rs2062014	A	G	A	Sox3.mouse_HMG_3	4	1	+	1.7738092546397	-4.609007473354366	GTTCAATGCCAGTCACT
chr18	8944933	8944934	chr18:8944934:G:A	rs73941716	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr18	8976686	8976687	chr18:8976687:G:A	rs12150726	G	A	G	Sox3.mouse_HMG_3	8	1	-	2.6996063975251907	2.437486652609085	AATGAAACCCATTCAAA
chr18	9096994	9096995	chr18:9096995:A:G	rs11872404	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr18	9174846	9174847	chr18:9174847:C:T	rs6506642	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr18	9174886	9174887	chr18:9174887:G:A	rs4798783	G	A	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr18	9285825	9285826	chr18:9285826:T:C	rs1114591	T	C	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr18	9678979	9678980	chr18:9678980:C:T	rs4121713	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr18	9728817	9728818	chr18:9728818:C:T	rs2902843	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr18	9756058	9756059	chr18:9756059:A:G	rs8099036	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr18	9775364	9775365	chr18:9775365:C:T	rs149779563	C	T	C	Sox3.mouse_HMG_3	16	1	-	0.585941526652473	0.5500010701999474	GGAGAATGACATACAGG
chr18	9907864	9907865	chr18:9907865:A:G	rs12456438	A	G	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr18	10086757	10086758	chr18:10086758:G:A	rs653360	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr18	10174229	10174230	chr18:10174230:T:C	rs11659284	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr18	10222096	10222097	chr18:10222097:A:G	rs55673825	A	G	g	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr18	10238903	10238904	chr18:10238904:T:C	rs34321759	T	C	C	Sox3.mouse_HMG_3	14	1	-	0.6722373857046959	-5.709708780722215	CAAGAATGCCAGACAGA
chr18	10296334	10296335	chr18:10296335:A:G	rs206472	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr18	10380126	10380127	chr18:10380127:T:A	rs1940924	T	A	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr18	10380133	10380134	chr18:10380134:C:G	rs62095178	C	G	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr18	10413585	10413586	chr18:10413586:G:T	rs72975480	G	T	G	Sox3.mouse_HMG_3	16	1	+	5.321783596726779	4.134854080521757	AATGCATGGTATTCCTG
chr18	10456018	10456019	chr18:10456019:C:G	rs74375655	C	G	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr18	10492025	10492026	chr18:10492026:C:A	rs10502395	C	A	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr18	10525587	10525588	chr18:10525588:A:G	rs512710	A	G	G	Sox3.mouse_HMG_3	2	1	-	4.4659691434868565	-2.1399099747440733	ATTGTATGTCAGTCAAG
chr18	10757869	10757870	chr18:10757870:A:G	rs7242408	A	G	a	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr18	10792365	10792366	chr18:10792366:A:T	rs72986052	A	T	A	Sox3.mouse_HMG_3	15	1	-	3.172088213299364	0.9082787490625428	AATGGATTGCAGTGATG
chr18	10813346	10813347	chr18:10813347:G:T	rs9945781	G	T	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr18	10848258	10848259	chr18:10848259:C:T	rs72973109	C	T	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr18	10848302	10848303	chr18:10848303:G:A	rs72973110	G	A	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr18	10949866	10949867	chr18:10949867:C:T	rs7243607	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr18	11388997	11388998	chr18:11388998:C:T	rs73943283	C	T	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr18	11573031	11573032	chr18:11573032:A:G	rs9960005	A	G	.	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr18	11667181	11667182	chr18:11667182:T:C	rs113370802	T	C	T	Sox3.mouse_HMG_3	5	1	-	4.9598793869465005	-1.5289555351243642	TCTGAATGACAATCAGA
chr18	11667191	11667192	chr18:11667192:C:A	rs16976591	C	A	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr18	11671231	11671232	chr18:11671232:G:A	rs12966339	G	A	G	Sox3.mouse_HMG_3	3	1	+	-0.6100591180523114	-6.391624005581544	GAGGAATGGCTTTCTTG
chr18	11671239	11671240	chr18:11671240:T:G	rs12967201	T	G	T	Sox3.mouse_HMG_3	11	1	+	-0.6100591180523114	-2.0444952183481186	GAGGAATGGCTTTCTTG
chr18	11839871	11839872	chr18:11839872:A:G	rs4371220	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr18	11857066	11857067	chr18:11857067:T:C	rs7241199	T	C	T	Sox3.mouse_HMG_3	11	1	+	3.871485003088398	-2.213125823013547	CTTAAATGATATTCAGT
chr18	12035994	12035995	chr18:12035995:T:G	rs627965	T	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr18	12078224	12078225	chr18:12078225:C:T	rs4636985	C	T	.	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr18	12404964	12404965	chr18:12404965:T:C	rs75484433	T	C	T	Sox3.mouse_HMG_3	8	1	+	1.222099806350641	1.4842195512667469	GATGAATATTAATCACG
chr18	12755581	12755582	chr18:12755582:C:A	rs1833325	C	A	C	Sox3.mouse_HMG_3	13	1	+	5.080356177702634	-1.3022804962747416	GATGGATGGTAGTCTTG
chr18	12791817	12791818	chr18:12791818:C:T	rs114577437	C	T	C	Sox3.mouse_HMG_3	9	1	-	1.3743663041327912	0.6600766869990368	GCTGAATGCGCTTCATT
chr18	13465479	13465480	chr18:13465480:G:A	rs117112826	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr18	13548361	13548362	chr18:13548362:C:T	rs534089173	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr18	13559348	13559349	chr18:13559349:C:A	rs10853237	C	A	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr18	13642721	13642722	chr18:13642722:T:C	rs12326169	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr18	13661506	13661507	chr18:13661507:G:T	rs145246857	G	T	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr18	13738952	13738953	chr18:13738953:C:A	rs66848489	C	A	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr18	13738954	13738955	chr18:13738955:T:C	rs7238266	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr18	14573371	14573372	chr18:14573372:G:T	rs56819673	G	T	.	Sox3.mouse_HMG_3	6	1	-	2.4613383055135447	2.3182374618728714	TATGTACGTCAGTCATT
chr18	14855614	14855615	chr18:14855615:C:T	rs1713879	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr18	14913292	14913293	chr18:14913293:A:G	rs786006	A	G	.	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr18	14917153	14917154	chr18:14917154:G:A	rs2139097	G	A	.	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr18	14917169	14917170	chr18:14917170:T:C	rs1518582	T	C	.	Sox3.mouse_HMG_3	16	1	-	3.4043278946985094	3.440268351151035	GGAGAATGACATGCATA
chr18	20973719	20973720	chr18:20973720:C:G	rs115655945	C	G	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr18	20973750	20973751	chr18:20973751:A:G	rs59730080	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr18	21672539	21672540	chr18:21672540:C:G	rs11659365	C	G	C	Sox3.mouse_HMG_3	13	1	+	2.6048002407812554	-4.002460369680765	AATGATTTGCACTCAAA
chr18	21703244	21703245	chr18:21703245:T:G	rs73963238	T	G	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr18	21703286	21703287	chr18:21703287:G:C	rs78730350	G	C	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr18	22116708	22116709	chr18:22116709:A:T	rs9950004	A	T	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr18	22195702	22195703	chr18:22195703:C:T	rs115311084	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr18	22557346	22557347	chr18:22557347:T:C	rs138813107	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr18	22557382	22557383	chr18:22557383:T:C	rs11873651	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr18	22668324	22668325	chr18:22668325:T:C	rs2222394	T	C	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr18	22681675	22681676	chr18:22681676:C:T	rs11664030	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr18	22724120	22724121	chr18:22724121:G:A	rs299242	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr18	23106928	23106929	chr18:23106929:A:T	rs73400684	A	T	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr18	23142673	23142674	chr18:23142674:G:A	rs80006503	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr18	23236719	23236720	chr18:23236720:C:T	rs1966656	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr18	23258071	23258072	chr18:23258072:A:G	rs78479391	A	G	A	Sox3.mouse_HMG_3	6	1	-	2.643547114141791	-3.964403527399007	AAACAATGTCAGTCATT
chr18	23524006	23524007	chr18:23524007:T:G	rs891386	T	G	T	Sox3.mouse_HMG_3	15	1	-	4.186425220616232	1.7358412731379844	ATTCAATTGTAGTCAAG
chr18	23567544	23567545	chr18:23567545:C:T	rs1652348	C	T	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr18	23672627	23672628	chr18:23672628:A:G	rs12962228	A	G	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr18	23969833	23969834	chr18:23969834:G:A	rs73967646	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr18	23969939	23969940	chr18:23969940:T:C	rs9958904	T	C	C	Sox3.mouse_HMG_3	14	1	-	3.0964968287654226	-3.285449337661489	ATTGAATGAGATGCATA
chr18	24102335	24102336	chr18:24102336:C:T	rs16940484	C	T	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr18	24500128	24500129	chr18:24500129:T:A	rs637702	T	A	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr18	24544453	24544454	chr18:24544454:T:C	rs1945168	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr18	24938423	24938424	chr18:24938424:C:T	rs1668853	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr18	25164865	25164866	chr18:25164866:G:T	rs8085678	G	T	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr18	25209503	25209504	chr18:25209504:T:G	rs12456914	T	G	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr18	25288809	25288810	chr18:25288810:G:C	chr18:25288810:G:C	G	C	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr18	25360429	25360430	chr18:25360430:C:T	rs35391346	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr18	26058370	26058371	chr18:26058371:T:C	rs898184	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr18	26074609	26074610	chr18:26074610:G:T	rs12964037	G	T	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr18	26183463	26183464	chr18:26183464:T:C	rs114517867	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr18	26230276	26230277	chr18:26230277:T:C	rs4800249	T	C	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr18	26403711	26403712	chr18:26403712:A:C	rs1786251	A	C	A	Sox3.mouse_HMG_3	12	1	-	2.7378127831803347	-3.6432620631415746	AATGAATTCTAGTGCTG
chr18	26403712	26403713	chr18:26403713:C:T	rs1677005	C	T	C	Sox3.mouse_HMG_3	11	1	-	2.7378127831803347	-1.9123619426258038	AATGAATTCTAGTGCTG
chr18	26448910	26448911	chr18:26448911:C:T	rs140025149	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr18	26513834	26513835	chr18:26513835:A:G	rs9960543	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr18	26602288	26602289	chr18:26602289:T:C	rs533813	T	C	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr18	26757611	26757612	chr18:26757612:C:T	rs7230487	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr18	27058150	27058151	chr18:27058151:G:A	rs1485807	G	A	G	Sox3.mouse_HMG_3	7	1	+	3.966548964894886	-2.5869997497628408	TAGGAATGCTAGTCTTA
chr18	27198252	27198253	chr18:27198253:A:G	rs41407148	A	G	A	Sox3.mouse_HMG_3	4	1	+	6.567617361594694	0.18480063360062737	CAAGAATTTCAGTCAAG
chr18	27854422	27854423	chr18:27854423:G:A	rs12957298	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr18	28018501	28018502	chr18:28018502:C:G	rs17445861	C	G	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr18	28028132	28028133	chr18:28028133:T:C	rs505314	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr18	28124797	28124798	chr18:28124798:G:C	rs2155766	G	C	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr18	28124800	28124801	chr18:28124801:C:T	rs8089347	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr18	28658615	28658616	chr18:28658616:G:T	rs1692519	G	T	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr18	28752140	28752141	chr18:28752141:C:T	rs75891119	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr18	28855021	28855022	chr18:28855022:G:C	rs577218	G	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr18	28909220	28909221	chr18:28909221:G:A	rs145301617	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr18	28963194	28963195	chr18:28963195:C:T	rs10163952	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr18	29083442	29083443	chr18:29083443:C:T	rs10164187	C	T	C	Sox3.mouse_HMG_3	16	1	+	2.8437306406341514	3.71065738010643	ACTGGATTTCAGTCATC
chr18	29147910	29147911	chr18:29147911:T:G	rs1990800	T	G	T	Sox3.mouse_HMG_3	5	1	-	7.336952070184377	0.7295114057056673	GGGGAATGATAGTCATA
chr18	29158048	29158049	chr18:29158049:G:A	rs4800911	G	A	A	Sox3.mouse_HMG_3	4	1	-	3.2345361767849363	3.3776370204256096	AAAGCATTTTATTCATT
chr18	29161656	29161657	chr18:29161657:G:A	rs73952247	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr18	29653920	29653921	chr18:29653921:T:C	rs1492811	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr18	29661148	29661149	chr18:29661149:A:T	rs4538082	A	T	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr18	29765009	29765010	chr18:29765010:A:G	rs9945072	A	G	a	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr18	29779174	29779175	chr18:29779175:C:A	rs10502530	C	A	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr18	30191365	30191366	chr18:30191366:A:T	rs9950484	A	T	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr18	31131555	31131556	chr18:31131556:C:T	rs1789072	C	T	C	Sox3.mouse_HMG_3	0	1	-	2.0074936408128106	1.1822097396664653	GTTAAATGCTAGTTATA
chr18	31389044	31389045	chr18:31389045:C:T	rs16959863	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr18	31398348	31398349	chr18:31398349:C:T	rs7229349	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr18	31679624	31679625	chr18:31679625:G:A	rs116688005	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr18	31684332	31684333	chr18:31684333:T:C	rs35210437	T	C	T	Sox3.mouse_HMG_3	2	1	+	0.37787964972204	-6.22799946850889	GATGAAGTACAGACAGG
chr18	32057236	32057237	chr18:32057237:T:C	rs170861	T	C	T	Sox3.mouse_HMG_3	1	1	+	8.55049802563665	7.343715319969851	ATTGAATGTTATCCATA
chr18	32084452	32084453	chr18:32084453:C:T	rs9955978	C	T	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr18	32301195	32301196	chr18:32301196:C:T	rs978785210	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr18	32317525	32317526	chr18:32317526:T:C	rs632368	T	C	T	Sox3.mouse_HMG_3	1	1	+	1.6092779562540882	0.4024952505872881	TTTGAATGGCAGTTTTG
chr18	32317549	32317550	chr18:32317550:C:T	rs656946	C	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr18	32319179	32319180	chr18:32319180:A:T	rs638142	A	T	T	Sox3.mouse_HMG_3	13	1	+	2.1631635722030653	1.9385396357184213	AATGAAATGCATTAAAA
chr18	32429795	32429796	chr18:32429796:A:G	rs10468904	A	G	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr18	32582756	32582757	chr18:32582757:A:G	rs73425650	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.967046251545757	-3.6409043899950397	TGTGAAAGGCAGTCACA
chr18	32582775	32582776	chr18:32582776:A:G	rs150343784	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr18	32595644	32595645	chr18:32595645:A:G	rs9635884	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr18	32608806	32608807	chr18:32608807:G:A	rs73409207	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr18	32669015	32669016	chr18:32669016:C:T	rs2421639	C	T	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr18	32684297	32684298	chr18:32684298:T:C	rs79045943	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr18	32698557	32698558	chr18:32698558:G:A	rs12970312	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr18	32730416	32730417	chr18:32730417:G:T	rs7235638	G	T	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr18	33814734	33814735	chr18:33814735:G:A	rs12607190	G	A	G	Sox3.mouse_HMG_3	4	1	-	0.7976732411246819	0.9407740847653552	TATGCATGTCAGCCAGG
chr18	33829349	33829350	chr18:33829350:C:T	rs9945976	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr18	34194155	34194156	chr18:34194156:T:C	rs11081849	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr18	34401585	34401586	chr18:34401586:G:A	rs35651788	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr18	34509643	34509644	chr18:34509644:C:G	rs2439860	C	G	c	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr18	34592964	34592965	chr18:34592965:C:T	rs556383246	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr18	34649554	34649555	chr18:34649555:G:C	rs1240976	G	C	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr18	34806020	34806021	chr18:34806021:A:G	rs11664400	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr18	34852152	34852153	chr18:34852153:A:G	rs1786606	A	G	G	Sox3.mouse_HMG_3	15	1	-	3.1483985026317236	-1.5659949090833445	CATTAATTGCATTGATA
chr18	34913788	34913789	chr18:34913789:C:T	rs8083966	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr18	35241439	35241440	chr18:35241440:G:A	rs1476750748	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr18	35241485	35241486	chr18:35241486:A:G	rs187426770	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr18	35497073	35497074	chr18:35497074:A:T	chr18:35497074:A:T	A	T	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr18	35497397	35497398	chr18:35497398:A:C	rs76110714	A	C	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr18	35500231	35500232	chr18:35500232:A:G	rs8095070	A	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr18	35617050	35617051	chr18:35617051:A:G	rs187282929	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr18	35617059	35617060	chr18:35617060:G:A	rs143091002	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr18	35617081	35617082	chr18:35617082:G:A	rs16966897	G	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr18	36072539	36072540	chr18:36072540:T:C	rs10153342	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr18	36177040	36177041	chr18:36177041:A:G	rs534961256	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr18	36177045	36177046	chr18:36177046:A:T	rs78743120	A	T	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr18	36298951	36298952	chr18:36298952:G:A	rs74651484	G	A	.	Sox3.mouse_HMG_3	8	1	-	1.3403653135708595	1.0782455686547536	TATGAATCCTAGGCAGA
chr18	36300378	36300379	chr18:36300379:C:T	rs116143406	C	T	.	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr18	36336233	36336234	chr18:36336234:T:G	rs9965224	T	G	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr18	36634971	36634972	chr18:36634972:A:G	rs116782360	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr18	36635010	36635011	chr18:36635011:T:G	rs983883	T	G	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr18	36690230	36690231	chr18:36690231:A:G	rs500559	A	G	G	Sox3.mouse_HMG_3	6	1	-	4.3299949997758445	-2.2779556417649527	ATTGAATGTTTGTCAAG
chr18	36716523	36716524	chr18:36716524:T:C	rs1246339	T	C	C	Sox3.mouse_HMG_3	0	1	-	3.0234162060317793	3.848700107178125	ATTAAATGCCATCCATA
chr18	37141489	37141490	chr18:37141490:C:T	rs72894339	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr18	37298446	37298447	chr18:37298447:C:T	rs7234413	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr18	37487565	37487566	chr18:37487566:C:T	rs7238538	C	T	C	Sox3.mouse_HMG_3	9	1	+	0.6921678702412308	0.6998045472329768	AATGAATAGCGGTCAGA
chr18	37487580	37487581	chr18:37487581:G:A	rs1557416	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr18	37530111	37530112	chr18:37530112:T:C	rs150609298	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr18	37612044	37612045	chr18:37612045:T:G	rs111942381	T	G	T	Sox3.mouse_HMG_3	8	1	+	2.3278890633154243	3.0327914769094617	AATGAATGTTAGCTATT
chr18	37717092	37717093	chr18:37717093:C:T	rs930026	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr18	37988689	37988690	chr18:37988690:G:A	rs4401109	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr18	38368478	38368479	chr18:38368479:A:G	rs28478521	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr18	38430502	38430503	chr18:38430503:T:C	rs12456426	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr18	38483250	38483251	chr18:38483251:G:A	rs73948002	G	A	G	Sox3.mouse_HMG_3	9	1	-	1.6984927553235163	1.706129432315264	GATGAATTGCAGTTCAA
chr18	38520808	38520809	chr18:38520809:T:C	rs17560838	T	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr18	39485900	39485901	chr18:39485901:C:G	rs1681039	C	G	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr18	39802598	39802599	chr18:39802599:A:G	rs9789235	A	G	a	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr18	39845698	39845699	chr18:39845699:A:G	rs4799278	A	G	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr18	40651976	40651977	chr18:40651977:A:C	rs9945502	A	C	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr18	40763286	40763287	chr18:40763287:G:A	rs324321	G	A	G	Sox3.mouse_HMG_3	3	1	+	3.774597808939734	-2.006967078589498	GATGCCTGTCAGTCATG
chr18	40810517	40810518	chr18:40810518:A:G	rs75270456	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr18	40927174	40927175	chr18:40927175:T:C	rs501766	T	C	T	Sox3.mouse_HMG_3	9	1	+	2.551331314240776	2.54369463724903	AATAAATTGTATACAGA
chr18	41004644	41004645	chr18:41004645:T:C	rs62082410	T	C	T	Sox3.mouse_HMG_3	9	1	+	7.10747938559048	7.099842708598732	AATGAATTATTTTCAGG
chr18	41156104	41156105	chr18:41156105:T:A	rs17696732	T	A	.	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr18	41280457	41280458	chr18:41280458:C:T	rs77199499	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr18	41702908	41702909	chr18:41702909:T:A	rs9304252	T	A	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr18	41855985	41855986	chr18:41855986:C:T	rs118176569	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr18	42211267	42211268	chr18:42211268:G:A	rs1381342	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr18	42574616	42574617	chr18:42574617:C:A	rs7229728	C	A	C	Sox3.mouse_HMG_3	3	1	-	5.327966667563416	-1.5785278169512988	AATGAATGATAATAATA
chr18	42614157	42614158	chr18:42614158:T:C	rs79215362	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr18	42712181	42712182	chr18:42712182:G:C	rs9965523	G	C	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr18	43081819	43081820	chr18:43081820:A:C	rs28550022	A	C	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr18	43460109	43460110	chr18:43460110:C:A	rs8087565	C	A	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr18	43625814	43625815	chr18:43625815:T:C	rs1527430	T	C	C	Sox3.mouse_HMG_3	16	1	-	5.892609867591393	5.928550324043918	GATGATTGACATACATA
chr18	43819706	43819707	chr18:43819707:G:C	rs1350720	G	C	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr18	43850095	43850096	chr18:43850096:A:G	rs9304296	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr18	43868573	43868574	chr18:43868574:T:C	rs8096291	T	C	T	Sox3.mouse_HMG_3	11	1	+	11.044490213048444	4.9598793869465005	TCTGAATGACATTCAGA
chr18	43931705	43931706	chr18:43931706:G:A	rs11876994	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr18	44280777	44280778	chr18:44280778:G:T	rs16977932	G	T	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr18	44290926	44290927	chr18:44290927:G:A	rs7237160	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr18	44731736	44731737	chr18:44731737:T:C	rs148851173	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr18	44887076	44887077	chr18:44887077:G:C	rs595106	G	C	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr18	45432040	45432041	chr18:45432041:G:A	rs28734473	G	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr18	45776216	45776217	chr18:45776217:A:G	rs12455458	A	G	A	Sox3.mouse_HMG_3	1	1	-	2.5457273884523843	1.3389446827855844	GTTGAAAGACATTCCTG
chr18	46064809	46064810	chr18:46064810:T:C	rs111730136	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr18	46165284	46165285	chr18:46165285:C:T	rs148078727	C	T	C	Sox3.mouse_HMG_3	6	1	+	0.7162033201288992	7.324153961669698	GCTGAACGCTAGTCACT
chr18	46321598	46321599	chr18:46321599:G:A	rs996299939	G	A	G	Sox3.mouse_HMG_3	16	1	+	1.8396531959531002	1.8037127395005745	TGTGAATGTCCTTGATG
chr18	46362719	46362720	chr18:46362720:G:C	rs62095709	G	C	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr18	46704220	46704221	chr18:46704221:A:G	rs4890684	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr18	46760122	46760123	chr18:46760123:T:A	rs3897629	T	A	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr18	46829617	46829618	chr18:46829618:C:A	rs72907142	C	A	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr18	47265391	47265392	chr18:47265392:T:C	chr18:47265392:T:C	T	C	T	Sox3.mouse_HMG_3	14	1	-	3.940976551605776	-2.4409696148211353	TAAGTATTCCAGTCATG
chr18	47345834	47345835	chr18:47345835:A:G	rs16951627	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr18	47441418	47441419	chr18:47441419:A:C	rs1434497	A	C	A	Sox3.mouse_HMG_3	0	1	-	2.1980756905566476	2.466996544356401	TATAAACTCCATTCAGG
chr18	47457550	47457551	chr18:47457551:T:C	rs7235819	T	C	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr18	47601909	47601910	chr18:47601910:G:A	rs117911202	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr18	47611844	47611845	chr18:47611845:G:A	rs12967226	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr18	47737663	47737664	chr18:47737664:A:G	rs8091406	A	G	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr18	47846564	47846565	chr18:47846565:G:A	rs57673669	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr18	47940235	47940236	chr18:47940236:A:C	rs9966964	A	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr18	47991393	47991394	chr18:47991394:C:G	rs17885999	C	G	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr18	48055010	48055011	chr18:48055011:A:G	rs4468699	A	G	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr18	48125347	48125348	chr18:48125348:A:G	rs142357891	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr18	48130275	48130276	chr18:48130276:A:T	rs9948682	A	T	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr18	48140747	48140748	chr18:48140748:C:G	rs79429603	C	G	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr18	48376505	48376506	chr18:48376506:A:C	rs4940362	A	C	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr18	48472147	48472148	chr18:48472148:T:C	rs9956450	T	C	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr18	48529958	48529959	chr18:48529959:C:A	rs138587779	C	A	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr18	48574030	48574031	chr18:48574031:A:T	rs11873436	A	T	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr18	48716305	48716306	chr18:48716306:C:G	rs1486420754	C	G	C	Sox3.mouse_HMG_3	3	1	-	10.606925083475343	3.857434347770293	GATGACTGACAGTCATG
chr18	48932808	48932809	chr18:48932809:A:C	rs72917785	A	C	A	Sox3.mouse_HMG_3	14	1	+	1.4609551852685514	-4.92099098115836	CAAGAATTTCCTTCATC
chr18	48940141	48940142	chr18:48940142:C:T	rs59741680	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr18	49025487	49025488	chr18:49025488:T:C	rs876572	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr18	49025493	49025494	chr18:49025494:T:C	rs357905	T	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr18	49322962	49322963	chr18:49322963:C:T	rs506426	C	T	C	Sox3.mouse_HMG_3	11	1	-	1.1045819909643548	-3.545592734841783	ATTGAATGCCAGACCTG
chr18	49548937	49548938	chr18:49548938:G:A	rs4556888	G	A	g	Sox3.mouse_HMG_3	1	1	+	0.7452019727971895	3.845331909234482	AGGGAATGGCAGTCCTA
chr18	49691005	49691006	chr18:49691006:A:G	rs59238790	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr18	49789245	49789246	chr18:49789246:G:A	rs644897	G	A	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr18	49834448	49834449	chr18:49834449:G:A	rs7244073	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr18	49875564	49875565	chr18:49875565:C:T	rs2276172	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr18	50092684	50092685	chr18:50092685:A:C	rs74623953	A	C	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr18	50203640	50203641	chr18:50203641:T:C	rs8091012	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr18	50552346	50552347	chr18:50552347:G:A	rs28693960	G	A	G	Sox3.mouse_HMG_3	13	1	-	2.1070230164583896	-4.5002375940036305	GGGGAATGTCAGTCAGC
chr18	51427188	51427189	chr18:51427189:G:A	rs321875	G	A	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr18	51447718	51447719	chr18:51447719:C:T	rs12456213	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr18	51462077	51462078	chr18:51462078:C:T	rs7233656	C	T	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr18	51712838	51712839	chr18:51712839:C:T	rs172829	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr18	51754179	51754180	chr18:51754180:G:A	rs323111	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr18	51825378	51825379	chr18:51825379:A:G	rs1383525	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr18	52403642	52403643	chr18:52403643:T:C	rs16954863	T	C	C	Sox3.mouse_HMG_3	2	1	+	1.3221778467465979	-5.283701271484332	AATGAAAATTATTCAGG
chr18	52779950	52779951	chr18:52779951:T:A	rs9959370	T	A	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr18	53637926	53637927	chr18:53637927:G:A	rs11083013	G	A	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr18	53741962	53741963	chr18:53741963:G:A	rs1424511	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr18	53990489	53990490	chr18:53990490:A:T	rs72926096	A	T	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr18	53990530	53990531	chr18:53990531:A:T	rs9958112	A	T	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr18	54136953	54136954	chr18:54136954:A:G	rs77436576	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.4267299327371523	-5.062104989333713	CAGGAAGGGCAGTCATT
chr18	54233467	54233468	chr18:54233468:G:A	rs114730458	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr18	54786523	54786524	chr18:54786524:G:A	rs6566848	G	A	A	Sox3.mouse_HMG_3	3	1	+	1.6146841080909375	-4.166880779438293	GATGCATGTCTTTCAAT
chr18	54992181	54992182	chr18:54992182:T:A	rs961140	T	A	T	Sox3.mouse_HMG_3	2	1	+	2.7213944519645317	-3.0059342623750918	ATTGAATTTCAGTTAGA
chr18	55078395	55078396	chr18:55078396:G:T	rs72936666	G	T	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr18	55753940	55753941	chr18:55753941:G:A	rs34984088	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr18	56158916	56158917	chr18:56158917:C:T	rs72928479	C	T	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr18	56161027	56161028	chr18:56161028:T:G	rs8086722	T	G	T	Sox3.mouse_HMG_3	14	1	-	9.13516485244402	2.753218686017111	TTTGAATGTCATCCATG
chr18	56329735	56329736	chr18:56329736:T:G	rs8099025	T	G	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr18	57309327	57309328	chr18:57309328:G:A	rs9955810	G	A	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr18	57312164	57312165	chr18:57312165:A:G	rs990729	A	G	G	Sox3.mouse_HMG_3	1	1	+	9.185543278907133	6.085413342469841	GATGAATGCCATCCAAT
chr18	57312171	57312172	chr18:57312172:C:T	rs990730	C	T	T	Sox3.mouse_HMG_3	8	1	+	9.185543278907133	8.923423533991027	GATGAATGCCATCCAAT
chr18	57500662	57500663	chr18:57500663:A:G	rs4940833	A	G	G	Sox3.mouse_HMG_3	10	1	+	1.586251720519691	-5.021698921021106	TCTGAGAGGCATTCATG
chr18	57659527	57659528	chr18:57659528:C:A	rs1110965	C	A	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr18	57760150	57760151	chr18:57760151:G:A	rs7227850	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr18	57812092	57812093	chr18:57812093:G:A	rs67325035	G	A	g	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr18	57841914	57841915	chr18:57841915:A:C	rs62094885	A	C	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr18	57984938	57984939	chr18:57984939:A:C	rs7236724	A	C	t	Sox3.mouse_HMG_3	9	1	-	2.5677393927563577	-2.779826291609953	CATGAATGCTTTTGATT
chr18	57984939	57984940	chr18:57984940:G:A	rs7235042	G	A	G	Sox3.mouse_HMG_3	8	1	-	2.5677393927563577	2.305619647840252	CATGAATGCTTTTGATT
chr18	58043181	58043182	chr18:58043182:G:A	rs115564893	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr18	58258802	58258803	chr18:58258803:C:T	rs111415862	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr18	58359471	58359472	chr18:58359472:C:T	rs72942884	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr18	58421883	58421884	chr18:58421884:A:G	rs4940689	A	G	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr18	58439250	58439251	chr18:58439251:T:G	rs4940695	T	G	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr18	58447912	58447913	chr18:58447913:T:A	rs4245272	T	A	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr18	58487747	58487748	chr18:58487748:G:A	rs12605493	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr18	58697448	58697449	chr18:58697449:C:T	rs11877398	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr18	58805605	58805606	chr18:58805606:C:T	rs146873560	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr18	59172935	59172936	chr18:59172936:T:C	rs146197821	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr18	59318556	59318557	chr18:59318557:T:C	rs59444152	T	C	T	Sox3.mouse_HMG_3	14	1	-	1.616743885890247	-4.765202280536664	AATGTATTGCTGTCATT
chr18	59469307	59469308	chr18:59469308:T:C	rs895010	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr18	59607280	59607281	chr18:59607281:A:G	rs12457013	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr18	59717662	59717663	chr18:59717663:A:G	rs1788896	A	G	G	Sox3.mouse_HMG_3	12	1	-	0.3235948566614868	-5.869258710739279	TGTGAATGGGTGTCATC
chr18	59721745	59721746	chr18:59721746:T:C	rs11665143	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr18	59883167	59883168	chr18:59883168:C:T	rs79335289	C	T	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr18	59953738	59953739	chr18:59953739:C:T	rs150398201	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr18	59953779	59953780	chr18:59953780:G:A	rs28461831	G	A	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr18	60019644	60019645	chr18:60019645:C:T	rs138078559	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr18	61096750	61096751	chr18:61096751:G:A	rs73000408	G	A	G	Sox3.mouse_HMG_3	16	1	-	2.043530611474765	2.910457350947044	TATGAAATTTATTGATC
chr18	61283123	61283124	chr18:61283124:A:G	rs11665042	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr18	61581455	61581456	chr18:61581456:T:C	rs59304542	T	C	.	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr18	61664581	61664582	chr18:61664582:A:G	rs7227150	A	G	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr18	61871550	61871551	chr18:61871551:C:T	rs12967834	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr18	61888103	61888104	chr18:61888104:T:C	rs9954003	T	C	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr18	61945828	61945829	chr18:61945829:C:G	rs17069070	C	G	G	Sox3.mouse_HMG_3	3	1	-	1.33654797235523	-5.41294276334982	TAGGATTGGTATTCAAC
chr18	61946767	61946768	chr18:61946768:A:G	rs17069086	A	G	G	Sox3.mouse_HMG_3	10	1	+	3.1630034479584	-3.444947193582398	ATTTAATTGCAGTCAGG
chr18	61948747	61948748	chr18:61948748:C:G	rs77356261	C	G	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr18	62074209	62074210	chr18:62074210:T:G	rs62095277	T	G	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr18	62253143	62253144	chr18:62253144:T:G	rs12326855	T	G	G	Sox3.mouse_HMG_3	2	1	+	1.058664824055824	-5.690315137815779	TATGAAGGGTGGTCAGA
chr18	62343214	62343215	chr18:62343215:A:C	rs4369774	A	C	c	Sox3.mouse_HMG_3	15	1	+	2.9113281656417884	0.46074421816354105	TCTGAAATATAGTCAAG
chr18	62413077	62413078	chr18:62413078:A:G	rs2957150	A	G	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr18	62413084	62413085	chr18:62413085:C:G	rs3017347	C	G	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr18	62638295	62638296	chr18:62638296:A:T	rs1022649161	A	T	A	Sox3.mouse_HMG_3	16	1	+	2.5703864933037295	1.4193974335512332	TGTGAATCCTGTTCATA
chr18	62715384	62715385	chr18:62715385:G:C	chr18:62715385:G:C	G	C	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr18	62715387	62715388	chr18:62715388:T:C	rs372201835	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr18	62808531	62808532	chr18:62808532:A:G	rs8090037	A	G	G	Sox3.mouse_HMG_3	9	1	-	3.4895679549928946	3.481931278001147	GATGAATTCTAAACAAA
chr18	63255040	63255041	chr18:63255041:G:A	rs3744949	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr18	63255042	63255043	chr18:63255043:C:T	rs3744950	C	T	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr18	63280972	63280973	chr18:63280973:T:C	rs72945054	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr18	63287343	63287344	chr18:63287344:A:T	rs2551397	A	T	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr18	63476759	63476760	chr18:63476760:C:T	rs190140832	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr18	63526486	63526487	chr18:63526487:C:T	rs12605954	C	T	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr18	64331323	64331324	chr18:64331324:G:A	rs8089715	G	A	G	Sox3.mouse_HMG_3	2	1	-	8.211560430821592	14.817439549052523	TACGAATGTTAGTCATC
chr18	64463618	64463619	chr18:64463619:T:C	rs7505060	T	C	C	Sox3.mouse_HMG_3	9	1	+	2.3811505714282672	2.3735138944365213	TGTAAATTTTATCCATG
chr18	64693976	64693977	chr18:64693977:A:G	rs7235701	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr18	65233987	65233988	chr18:65233988:A:T	rs534396	A	T	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr18	65288132	65288133	chr18:65288133:C:T	rs1505996	C	T	C	Sox3.mouse_HMG_3	0	1	-	3.1342685095359073	2.3089846083895633	GATGAATGTCTTTCCAA
chr18	65398684	65398685	chr18:65398685:A:C	rs10871584	A	C	A	Sox3.mouse_HMG_3	15	1	+	2.993223177013335	0.5426392295350877	AAGAAATGACATTCAAA
chr18	65425465	65425466	chr18:65425466:A:C	rs629988	A	C	A	Sox3.mouse_HMG_3	7	1	-	3.910751902894294	4.760784845124365	AATTAAATGTATTCATA
chr18	65450256	65450257	chr18:65450257:T:G	rs2850699	T	G	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr18	65737505	65737506	chr18:65737506:C:T	rs150001408	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr18	65753543	65753544	chr18:65753544:A:T	rs114357292	A	T	A	Sox3.mouse_HMG_3	8	1	-	1.7702011225968044	1.8519868890130282	AATGCATGTTAGTTATT
chr18	65955851	65955852	chr18:65955852:G:A	rs72939541	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr18	66375557	66375558	chr18:66375558:C:T	rs4600560	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr18	66731750	66731751	chr18:66731751:A:G	rs11151300	A	G	A	Sox3.mouse_HMG_3	8	1	+	6.510430332101392	7.133546979279205	TTTGAATGATATTTAAA
chr18	66734624	66734625	chr18:66734625:T:C	rs1352541	T	C	C	Sox3.mouse_HMG_3	1	1	+	1.7826958445803192	0.5759131389135193	GTCAAATGTTAGTCATG
chr18	66749772	66749773	chr18:66749773:C:T	rs1489298	C	T	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr18	66764828	66764829	chr18:66764829:T:C	rs113474397	T	C	T	Sox3.mouse_HMG_3	4	1	+	2.5023593060400655	2.359258462399392	TATGTAGTGTATTCAAA
chr18	67217807	67217808	chr18:67217808:G:A	rs4369778	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr18	67217813	67217814	chr18:67217814:G:T	rs113998450	G	T	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr18	67279165	67279166	chr18:67279166:T:A	rs716669	T	A	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr18	67520442	67520443	chr18:67520443:C:T	rs184137885	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr18	67520447	67520448	chr18:67520448:A:G	rs143135317	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr18	67704075	67704076	chr18:67704076:G:A	rs2448737	G	A	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr18	67825157	67825158	chr18:67825158:T:C	rs12456077	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr18	67854443	67854444	chr18:67854444:T:G	rs514705	T	G	G	Sox3.mouse_HMG_3	14	1	-	12.636354105504875	6.254407939077963	GATGAATGGTATTTATA
chr18	68033620	68033621	chr18:68033621:A:T	rs17078468	A	T	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr18	68033647	68033648	chr18:68033648:C:A	rs1356479	C	A	A	Sox3.mouse_HMG_3	10	1	+	3.3615561573751345	10.112607642556604	TATGAAAGTCCGTCATG
chr18	68033664	68033665	chr18:68033665:T:G	rs1356474	T	G	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr18	68125370	68125371	chr18:68125371:G:A	rs17200448	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr18	68316076	68316077	chr18:68316077:T:C	rs9646603	T	C	T	Sox3.mouse_HMG_3	1	1	+	7.989150555543851	6.782367849877052	TTTGAGTTTCATTCATG
chr18	68468542	68468543	chr18:68468543:G:A	rs183325235	G	A	G	Sox3.mouse_HMG_3	9	1	-	15.409804186261013	15.41744086325276	TTTGAATGACATTCATG
chr18	68495592	68495593	chr18:68495593:T:C	rs11872870	T	C	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr18	68533494	68533495	chr18:68533495:A:T	rs62097967	A	T	A	Sox3.mouse_HMG_3	0	1	+	2.300757072393811	2.8571201197404017	AAAGTATTTTATTCAAG
chr18	68746266	68746267	chr18:68746267:A:G	rs10871631	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr18	68769751	68769752	chr18:68769752:G:T	rs118158871	G	T	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr18	68778829	68778830	chr18:68778830:G:A	rs17236101	G	A	G	Sox3.mouse_HMG_3	11	1	+	1.037162234506755	-3.613012491299383	GATGACTTCTGGTCAAA
chr18	68954810	68954811	chr18:68954811:C:A	rs4450506	C	A	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr18	69455324	69455325	chr18:69455325:A:G	rs59148099	A	G	A	Sox3.mouse_HMG_3	0	1	+	1.1367774288170545	1.9620613299633984	ACTGAAAGGCATTCTTG
chr18	69753097	69753098	chr18:69753098:T:G	rs11151534	T	G	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr18	70019398	70019399	chr18:70019399:T:G	rs11660872	T	G	T	Sox3.mouse_HMG_3	2	1	+	1.3500902276781273	-5.398889734193477	TATGGATGCTAATCACA
chr18	70209041	70209042	chr18:70209042:T:C	rs116908718	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr18	70335313	70335314	chr18:70335314:C:A	rs35214693	C	A	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr18	70472707	70472708	chr18:70472708:T:A	rs9953912	T	A	a	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr18	70600383	70600384	chr18:70600384:T:C	rs1882465	T	C	T	Sox3.mouse_HMG_3	1	1	+	5.455109167476025	4.248326461809226	ATTTAATGGTATTCAGG
chr18	70756958	70756959	chr18:70756959:A:G	rs1529220	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr18	71604169	71604170	chr18:71604170:A:G	rs74882774	A	G	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr18	71718111	71718112	chr18:71718112:G:A	rs75829812	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr18	71761685	71761686	chr18:71761686:A:G	rs4891944	A	G	A	Sox3.mouse_HMG_3	0	1	-	4.623102473551601	3.1682318282147355	TTTGGATTCCAGTCAAA
chr18	71761702	71761703	chr18:71761703:T:A	rs4891945	T	A	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr18	72011620	72011621	chr18:72011621:G:C	rs4891971	G	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr18	72225508	72225509	chr18:72225509:C:T	rs4430852	C	T	T	Sox3.mouse_HMG_3	11	1	-	1.1726087094623876	-3.47756601634375	AATGAATGCCCGTCGAG
chr18	72452642	72452643	chr18:72452643:C:A	rs12606574	C	A	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr18	72672705	72672706	chr18:72672706:A:T	rs77969371	A	T	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr18	72964424	72964425	chr18:72964425:G:A	chr18:72964425:G:A	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr18	73381544	73381545	chr18:73381545:G:T	rs6566725	G	T	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr18	73528384	73528385	chr18:73528385:G:A	rs12956430	G	A	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr18	73577564	73577565	chr18:73577565:T:C	rs373439565	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr18	73577570	73577571	chr18:73577571:A:G	rs17087874	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr18	73646829	73646830	chr18:73646830:C:T	rs7240456	C	T	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr18	73680748	73680749	chr18:73680749:T:A	rs12969840	T	A	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr18	73680827	73680828	chr18:73680828:A:T	rs8097394	A	T	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr18	73840163	73840164	chr18:73840164:A:T	rs17088418	A	T	A	Sox3.mouse_HMG_3	14	1	+	1.4777279488059745	-4.904218217620937	GGTGAATGCCACACATC
chr18	74223330	74223331	chr18:74223331:T:C	rs10871733	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr18	74376292	74376293	chr18:74376293:G:A	rs117686655	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr18	74542954	74542955	chr18:74542955:G:A	rs12964208	G	A	A	Sox3.mouse_HMG_3	9	1	-	11.333567924423319	11.341204601415065	CTTGAATGACAGTCATT
chr18	74942714	74942715	chr18:74942715:C:T	rs1199414460	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr18	75489937	75489938	chr18:75489938:C:T	rs75952697	C	T	C	Sox3.mouse_HMG_3	9	1	-	3.0852582705654505	2.370968653431696	CATGAATTTGATGCATT
chr18	75498008	75498009	chr18:75498009:G:T	rs55984725	G	T	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr18	75659083	75659084	chr18:75659084:T:C	rs2584304	T	C	T	Sox3.mouse_HMG_3	14	1	-	4.4688995650673204	-1.913046601359591	AAAGAATGACAGCCATG
chr18	75810400	75810401	chr18:75810401:C:T	rs73972049	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr18	75811819	75811820	chr18:75811820:G:A	rs1982586	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr18	75924645	75924646	chr18:75924646:A:G	rs17058549	A	G	A	Sox3.mouse_HMG_3	12	1	-	0.7905999936453847	-5.402253573755381	CATGAATGAAAGTCCAG
chr18	76452817	76452818	chr18:76452818:T:C	rs17355234	T	C	T	Sox3.mouse_HMG_3	2	1	+	7.9885000566802	1.3826209384492703	TATGGATTACATTCAGA
chr18	76547974	76547975	chr18:76547975:C:T	rs1828132	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr18	76671332	76671333	chr18:76671333:A:G	rs6565902	A	G	G	Sox3.mouse_HMG_3	16	1	-	5.096629779142475	4.229703039670197	GGTTAATTTTAGTCATT
chr18	76737717	76737718	chr18:76737718:A:G	rs4273136	A	G	g	Sox3.mouse_HMG_3	10	1	+	4.953005808559399	-1.654944832981399	TCTGCATGGCATTCAGG
chr18	77015546	77015547	chr18:77015547:T:A	rs7236968	T	A	T	Sox3.mouse_HMG_3	7	1	+	4.909658733863103	-0.7938570385645531	TATGAATTCCATTAGTA
chr18	77085556	77085557	chr18:77085557:G:A	rs1789135	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr18	77162757	77162758	chr18:77162758:A:G	rs1630067	A	G	A	Sox3.mouse_HMG_3	15	1	-	0.6186285856510145	-4.095764826064054	CGTGCATTGCATCCATA
chr18	77209635	77209636	chr18:77209636:A:G	rs2850858	A	G	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr18	77452212	77452213	chr18:77452213:A:G	rs948718	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr18	78007037	78007038	chr18:78007038:A:T	rs117947343	A	T	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr18	78071418	78071419	chr18:78071419:C:T	rs180693468	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr18	78293979	78293980	chr18:78293980:G:C	rs118018860	G	C	G	Sox3.mouse_HMG_3	8	1	-	2.8790293584269167	3.3218120271048486	GATGCATGCTAATCAGG
chr18	78395144	78395145	chr18:78395145:C:T	rs9949633	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr18	78460466	78460467	chr18:78460467:G:A	rs7239185	G	A	G	Sox3.mouse_HMG_3	11	1	-	2.1804467613697547	8.2650575874717	GATGGATTATACTCAGA
chr18	78508221	78508222	chr18:78508222:G:A	rs377415106	G	A	G	Sox3.mouse_HMG_3	13	1	-	3.2179429145396323	-3.3893176959223874	TGTGAATGGTGCTCATG
chr18	78508235	78508236	chr18:78508236:C:T	rs112080918	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr18	78539057	78539058	chr18:78539058:A:G	rs4799164	A	G	A	Sox3.mouse_HMG_3	6	1	-	7.837497938524022	1.229547296983225	GGTGAATTTTCTTCATA
chr18	78544801	78544802	chr18:78544802:C:T	rs144860904	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr18	78546457	78546458	chr18:78546458:G:T	rs1866330	G	T	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr18	78608448	78608449	chr18:78608449:C:T	rs57769313	C	T	C	Sox3.mouse_HMG_3	4	1	-	0.8848693618953984	7.267686089889466	GATGGAATTCAGTCAAG
chr18	78811722	78811723	chr18:78811723:G:A	rs4799209	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr18	78894326	78894327	chr18:78894327:T:G	rs4798994	T	G	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr18	79123936	79123937	chr18:79123937:G:A	rs78717205	G	A	G	Sox3.mouse_HMG_3	2	1	+	1.7387092334309642	2.7603604809629454	GAGGAATGCCAGTTAAA
chr18	79170280	79170281	chr18:79170281:A:G	rs530471572	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr18	79216569	79216570	chr18:79216570:G:A	rs73000194	G	A	G	Sox3.mouse_HMG_3	7	1	+	2.6304352617376363	-3.9231134529200915	CCTGATTGCTAGTCAAG
chr18	79361898	79361899	chr18:79361899:A:G	rs114092764	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr18	79361913	79361914	chr18:79361914:A:G	rs3826566	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr18	79855380	79855381	chr18:79855381:G:A	rs4799093	G	A	g	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr18	79987541	79987542	chr18:79987542:T:C	rs7235319	T	C	C	Sox3.mouse_HMG_3	14	1	-	1.3873277305613383	-4.994618435865572	GATGACTTTTATTGAGG
chr18	80244355	80244356	chr18:80244356:T:C	rs6506819	T	C	.	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr19	295983	295984	chr19:295984:T:C	rs150777259	T	C	T	Sox3.mouse_HMG_3	9	1	+	3.684634640508236	3.6769979635164884	AATGACTTTTATTTATG
chr19	482840	482841	chr19:482841:G:C	rs4919902	G	C	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr19	658367	658368	chr19:658368:A:G	rs2040739	A	G	a	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr19	906632	906633	chr19:906633:T:C	rs8112519	T	C	-	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr19	1035450	1035451	chr19:1035451:C:T	rs35190713	C	T	-	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr19	1035455	1035456	chr19:1035456:A:C	rs10407915	A	C	-	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr19	1324078	1324079	chr19:1324079:G:A	rs1109001	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr19	1873261	1873262	chr19:1873262:C:T	rs10416817	C	T	T	Sox3.mouse_HMG_3	2	1	+	-0.43950786843376766	6.166371249797163	CACGAATGCCAGTCGGG
chr19	1901938	1901939	chr19:1901939:A:C	rs184688283	A	C	a	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr19	1906562	1906563	chr19:1906563:G:A	rs79235473	G	A	g	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr19	2169121	2169122	chr19:2169122:T:G	rs7256735	T	G	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr19	2381517	2381518	chr19:2381518:C:T	rs10423793	C	T	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr19	2381525	2381526	chr19:2381526:T:C	rs112094945	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr19	2495951	2495952	chr19:2495952:G:C	rs10406711	G	C	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr19	2495991	2495992	chr19:2495992:C:T	rs8102021	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr19	2532726	2532727	chr19:2532727:A:G	rs4806864	A	G	A	Sox3.mouse_HMG_3	5	1	+	7.98733707173861	1.4985021496677446	TATGAATTAAAGTCATC
chr19	2589966	2589967	chr19:2589967:G:A	rs11880600	G	A	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr19	2589967	2589968	chr19:2589968:T:C	rs11878716	T	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr19	2605870	2605871	chr19:2605871:A:G	rs116411225	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr19	2612621	2612622	chr19:2612622:A:G	rs8112281	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr19	2703031	2703032	chr19:2703032:A:G	rs113391116	A	G	A	Sox3.mouse_HMG_3	5	1	+	2.744134401058885	-3.744700521011979	GAAGAATGTCAGTGATC
chr19	2787330	2787331	chr19:2787331:G:A	rs941410	G	A	A	Sox3.mouse_HMG_3	11	1	+	1.1966675611984667	-3.4535071646076725	TAATAATGATAGTCAGG
chr19	2905914	2905915	chr19:2905915:G:T	rs11084971	G	T	G	Sox3.mouse_HMG_3	3	1	+	5.585431638292958	-1.3210628462217562	ATGGAATTGTATTCAAA
chr19	3013219	3013220	chr19:3013220:G:T	rs34836093	G	T	g	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr19	3013228	3013229	chr19:3013229:A:G	rs216270	A	G	g	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr19	3129263	3129264	chr19:3129264:A:G	rs575901746	A	G	A	Sox3.mouse_HMG_3	14	1	+	2.3251303309815037	-4.056815835445407	AATGAAATCCAGTGATA
chr19	3144357	3144358	chr19:3144358:C:T	rs62127294	C	T	c	Sox3.mouse_HMG_3	8	1	-	1.1701322447876823	0.5470155976098691	TAGGAATGGGAGTCAGT
chr19	3319102	3319103	chr19:3319103:T:C	rs68145201	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr19	3403005	3403006	chr19:3403006:A:G	rs3859564	A	G	A	Sox3.mouse_HMG_3	9	1	-	0.9218453184953941	0.9142086415036481	AATAAATGCTTGTCAGG
chr19	3511710	3511711	chr19:3511711:C:T	rs11672955	C	T	C	Sox3.mouse_HMG_3	9	1	+	0.12009904752574041	0.12773572451748816	AATGAATGACGTGCACG
chr19	3723288	3723289	chr19:3723289:G:C	rs4806950	G	C	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr19	3851707	3851708	chr19:3851708:C:A	rs35107765	C	A	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr19	3899031	3899032	chr19:3899032:A:G	rs12052042	A	G	A	Sox3.mouse_HMG_3	14	1	+	9.742604571465963	3.3606584050390502	TATGAATTATGTTCATT
chr19	3986408	3986409	chr19:3986409:A:T	rs10421759	A	T	A	Sox3.mouse_HMG_3	7	1	-	6.461130847124444	0.7576150746967865	TATGAAATACATTCAAC
chr19	4061191	4061192	chr19:4061192:C:T	rs10414261	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr19	4182941	4182942	chr19:4182942:G:T	rs3760905	G	T	T	Sox3.mouse_HMG_3	12	1	+	-0.03407877520872815	6.346996071113181	TTTGAATGCCACGCAGA
chr19	4371701	4371702	chr19:4371702:T:C	rs532049202	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr19	4708089	4708090	chr19:4708090:C:A	rs4401152	C	A	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr19	4812990	4812991	chr19:4812991:A:G	rs11085102	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr19	4870113	4870114	chr19:4870114:C:T	chr19:4870114:C:T	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr19	5182667	5182668	chr19:5182668:G:A	rs73541189	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr19	5352493	5352494	chr19:5352494:A:G	rs16992932	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.1242565985607267	-5.364578323510138	TGAGAATGATATTCTTC
chr19	5352511	5352512	chr19:5352512:G:T	rs892142	G	T	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr19	5352512	5352513	chr19:5352513:G:A	rs892141	G	A	g	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr19	5417822	5417823	chr19:5417823:A:T	rs424836	A	T	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr19	5519251	5519252	chr19:5519252:C:T	rs116990139	C	T	c	Sox3.mouse_HMG_3	9	1	+	-0.6095573675651742	-0.6019206905734282	CTGGAATGACAGGCATG
chr19	5637950	5637951	chr19:5637951:T:C	rs2436498	T	C	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr19	5883434	5883435	chr19:5883435:C:G	rs117336033	C	G	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr19	6043584	6043585	chr19:6043585:T:G	rs182794516	T	G	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr19	6633608	6633609	chr19:6633609:T:C	rs669631	T	C	t	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr19	6641450	6641451	chr19:6641451:A:G	rs12980563	A	G	G	Sox3.mouse_HMG_3	14	1	+	-0.3592187305821646	-6.7411648970090745	GCTGGAGTGCAGTCATA
chr19	6902691	6902692	chr19:6902692:C:T	rs4807912	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr19	7083749	7083750	chr19:7083750:A:G	rs8110740	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr19	7103304	7103305	chr19:7103305:T:C	rs16994131	T	C	-	Sox3.mouse_HMG_3	15	1	-	0.6255142447675934	-0.23326710208882706	TGTAAATTGCATTCTAG
chr19	7239634	7239635	chr19:7239635:T:C	rs149554085	T	C	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr19	7436913	7436914	chr19:7436914:G:A	rs11670340	G	A	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr19	7691201	7691202	chr19:7691202:T:C	rs66508756	T	C	N	Sox3.mouse_HMG_3	7	1	+	0.04285434068399274	-5.360556839293326	CCAGAAATGCATTCATG
chr19	7691708	7691709	chr19:7691709:G:A	rs62110724	G	A	g	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr19	7691747	7691748	chr19:7691748:A:C	rs62110725	A	C	N	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr19	7738280	7738281	chr19:7738281:A:G	rs7254342	A	G	a	Sox3.mouse_HMG_3	5	1	+	4.6299078201207955	-1.8589271019500684	GATGAATGGTGGTGATG
chr19	7738290	7738291	chr19:7738291:T:C	rs7258175	T	C	t	Sox3.mouse_HMG_3	15	1	+	4.6299078201207955	-0.0844855915942726	GATGAATGGTGGTGATG
chr19	7801284	7801285	chr19:7801285:G:C	rs544275	G	C	t	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr19	7972124	7972125	chr19:7972125:C:T	rs56204704	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr19	8038351	8038352	chr19:8038352:T:C	rs6603133	T	C	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr19	8196593	8196594	chr19:8196594:A:G	rs79745793	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr19	8320641	8320642	chr19:8320642:T:C	rs111822940	T	C	T	Sox3.mouse_HMG_3	5	1	+	1.7280767814369444	1.7280767814369444	CCTGATTGCCAGTCAGA
chr19	8452273	8452274	chr19:8452274:C:T	rs637922	C	T	C	Sox3.mouse_HMG_3	0	1	-	0.5529802031310348	-0.2723036980153092	GATGAATTATTTCCAGT
chr19	8575501	8575502	chr19:8575502:T:C	rs4804313	T	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr19	8575508	8575509	chr19:8575509:C:T	rs542991850	C	T	C	Sox3.mouse_HMG_3	11	1	-	2.7037631625022716	-1.946411563303866	GATGAGTGGCAGGCAAG
chr19	8811613	8811614	chr19:8811614:A:G	rs781927784	A	G	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr19	8923112	8923113	chr19:8923113:G:C	rs149789876	G	C	C	Sox3.mouse_HMG_3	9	1	-	1.6520111046115682	-3.6879179027629956	ATTGACTTACAGTCAGT
chr19	9076076	9076077	chr19:9076077:G:A	rs74652972	G	A	G	Sox3.mouse_HMG_3	1	1	+	1.3790403630510841	4.479170299488375	GGTGAAGGGCAGTGATG
chr19	9140854	9140855	chr19:9140855:C:T	rs12459687	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr19	9171701	9171702	chr19:9171702:G:A	rs7257452	G	A	.	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr19	9207375	9207376	chr19:9207376:C:T	rs74892143	C	T	c	Sox3.mouse_HMG_3	13	1	+	3.0293860716304293	-3.5778745388315913	AATGAAAGTGAGTCATT
chr19	9321230	9321231	chr19:9321231:T:C	rs2082426	T	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr19	9649665	9649666	chr19:9649666:A:T	rs11880397	A	T	A	Sox3.mouse_HMG_3	16	1	+	6.524803660078161	5.373814600325665	AATAAATTTTAGTCAGA
chr19	9839589	9839590	chr19:9839590:C:T	rs62105747	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr19	9987254	9987255	chr19:9987255:A:C	rs8101390	A	C	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr19	10206440	10206441	chr19:10206441:C:G	rs1431641598	C	G	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr19	10345619	10345620	chr19:10345620:T:C	rs144726883	T	C	t	Sox3.mouse_HMG_3	14	1	-	4.921484536526664	-1.460461629900246	CTGGAATTACAGTCATG
chr19	10346795	10346796	chr19:10346796:T:G	rs28378712	T	G	t	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr19	10381043	10381044	chr19:10381044:G:A	rs181433765	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr19	10533963	10533964	chr19:10533964:A:T	rs79866239	A	T	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr19	10602249	10602250	chr19:10602250:T:G	rs62129964	T	G	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr19	10655210	10655211	chr19:10655211:A:T	rs548183393	A	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr19	10655249	10655250	chr19:10655250:T:C	rs79078151	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr19	10745051	10745052	chr19:10745052:C:T	rs74991607	C	T	c	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr19	11093032	11093033	chr19:11093033:T:G	rs188288198	T	G	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr19	11125178	11125179	chr19:11125179:A:T	rs73017023	A	T	a	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr19	11650007	11650008	chr19:11650008:A:G	rs10426047	A	G	A	Sox3.mouse_HMG_3	10	1	+	0.20374214373228683	-6.404208497808511	TATATATGGTATTCTTA
chr19	11698393	11698394	chr19:11698394:A:G	rs557143771	A	G	A	Sox3.mouse_HMG_3	14	1	+	2.019366547075828	-4.362579619351083	AAGGAATGCTACTCAGA
chr19	11868012	11868013	chr19:11868013:G:T	rs112352083	G	T	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr19	12777889	12777890	chr19:12777890:G:C	rs528328851	G	C	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr19	12840133	12840134	chr19:12840134:G:C	rs10411443	G	C	G	Sox3.mouse_HMG_3	12	1	+	2.13997611537362	2.3281973942947634	AGTGAATGTCACGCATA
chr19	12973152	12973153	chr19:12973153:C:T	rs7248481	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr19	13254297	13254298	chr19:13254298:C:T	chr19:13254298:C:T	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr19	13428500	13428501	chr19:13428501:A:G	rs73922401	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr19	13493673	13493674	chr19:13493674:T:A	rs4926295	T	A	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr19	13549634	13549635	chr19:13549635:G:A	rs11665851	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr19	13589699	13589700	chr19:13589700:G:A	rs115486789	G	A	G	Sox3.mouse_HMG_3	9	1	-	0.3439177918517913	0.35155446884353814	GTTGTATGCCGTTCAAA
chr19	13617818	13617819	chr19:13617819:T:C	rs539344	T	C	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr19	13799072	13799073	chr19:13799073:G:A	rs74963241	G	A	g	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr19	13799077	13799078	chr19:13799078:T:C	rs10414500	T	C	t	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr19	13830207	13830208	chr19:13830208:A:C	rs56177954	A	C	A	Sox3.mouse_HMG_3	12	1	-	5.406260393789273	-0.9748144525326374	TCTGCATGATATTCATC
chr19	13900119	13900120	chr19:13900120:A:G	rs7507907	A	G	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr19	14006482	14006483	chr19:14006483:T:C	rs191187192	T	C	T	Sox3.mouse_HMG_3	0	1	+	3.162682996061119	1.7078123507242544	TATGAATGTCCATCAAA
chr19	14248865	14248866	chr19:14248866:G:A	rs41291038	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr19	14526115	14526116	chr19:14526116:C:T	rs9305041	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr19	14529234	14529235	chr19:14529235:C:T	chr19:14529235:C:T	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr19	14529275	14529276	chr19:14529276:A:C	chr19:14529276:A:C	A	C	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr19	14606978	14606979	chr19:14606979:A:G	rs10409868	A	G	.	Sox3.mouse_HMG_3	6	1	-	1.024841362080521	-5.5831092794602775	TAAAAATTCCATTCAGC
chr19	14891586	14891587	chr19:14891587:G:C	rs76719132	G	C	g	Sox3.mouse_HMG_3	16	1	-	6.163584468826079	8.21744072450338	GGTGAGTTATATTCATC
chr19	15101692	15101693	chr19:15101693:A:T	rs77193210	A	T	A	Sox3.mouse_HMG_3	11	1	-	0.09348153485578825	-5.991129291246158	GATGATTGAGGTTCATG
chr19	15288786	15288787	chr19:15288787:T:C	rs184323447	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr19	15288814	15288815	chr19:15288815:T:G	chr19:15288815:T:G	T	G	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr19	15535433	15535434	chr19:15535434:G:T	rs1273526	G	T	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr19	15570155	15570156	chr19:15570156:A:T	rs7259162	A	T	a	Sox3.mouse_HMG_3	12	1	-	0.22116681131534122	-5.891644048411889	AATGAATCTCAGTCCAT
chr19	16012818	16012819	chr19:16012819:C:T	rs2010870	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr19	16012864	16012865	chr19:16012865:A:G	rs757544	A	G	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr19	16034920	16034921	chr19:16034921:C:A	rs73513755	C	A	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr19	16040929	16040930	chr19:16040930:G:T	rs73004896	G	T	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr19	16145679	16145680	chr19:16145680:C:T	rs74472255	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr19	16197472	16197473	chr19:16197473:G:A	chr19:16197473:G:A	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr19	16197487	16197488	chr19:16197488:T:C	rs955141853	T	C	T	Sox3.mouse_HMG_3	15	1	-	6.441777380980733	5.582996034124313	TCTGAATGGCAATCAAA
chr19	16238381	16238382	chr19:16238382:T:C	rs376127	T	C	T	Sox3.mouse_HMG_3	4	1	+	-0.38153268014275166	-0.5246335237834241	ACTGTAGTCCATTCATG
chr19	16259859	16259860	chr19:16259860:A:T	rs12981672	A	T	T	Sox3.mouse_HMG_3	11	1	-	8.432599585813001	2.3479887597110567	TATGCATGTTATTCAGG
chr19	16316363	16316364	chr19:16316364:A:G	rs17709615	A	G	a	Sox3.mouse_HMG_3	12	1	-	0.21484424987864603	-5.978009317522122	GAGGAATTACAATCACA
chr19	16368848	16368849	chr19:16368849:C:T	rs10421252	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr19	16509281	16509282	chr19:16509282:C:T	rs74823584	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr19	16662069	16662070	chr19:16662070:C:T	rs8113407	C	T	C	Sox3.mouse_HMG_3	9	1	+	-0.08987318003400069	-0.08223650304225294	GATGAATGGCTTCCTTA
chr19	16941586	16941587	chr19:16941587:G:C	rs62129666	G	C	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr19	16944147	16944148	chr19:16944148:C:T	rs10417059	C	T	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr19	16957810	16957811	chr19:16957811:C:G	rs1457090	C	G	G	Sox3.mouse_HMG_3	1	1	-	1.8877256993828084	0.8109961219642075	AGTGAAAGACACTCATG
chr19	17086548	17086549	chr19:17086549:A:G	rs148525777	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr19	17291115	17291116	chr19:17291116:G:T	rs571322642	G	T	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr19	17312437	17312438	chr19:17312438:C:T	rs146547741	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr19	17391678	17391679	chr19:17391679:T:C	rs111815278	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr19	17420640	17420641	chr19:17420641:G:A	rs2303680	G	A	c	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr19	17617324	17617325	chr19:17617325:G:A	rs77568996	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr19	17620282	17620283	chr19:17620283:A:G	rs59692645	A	G	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr19	17853143	17853144	chr19:17853144:G:A	rs55988375	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr19	17965411	17965412	chr19:17965412:C:A	rs12980434	C	A	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr19	18053832	18053833	chr19:18053833:T:C	rs4808741	T	C	T	Sox3.mouse_HMG_3	11	1	+	3.1159847657639026	-2.9686260603380425	ATGGAATGCTATTCAGC
chr19	18053846	18053847	chr19:18053847:A:G	rs10424168	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr19	18264224	18264225	chr19:18264225:A:G	rs35768432	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr19	18386213	18386214	chr19:18386214:G:C	rs1059519	G	C	C	Sox3.mouse_HMG_3	1	1	+	0.17759498016119912	-0.899134597257403	GGTGAATGGCTCTCAGA
chr19	18427067	18427068	chr19:18427068:C:T	rs142258156	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr19	18460171	18460172	chr19:18460172:C:G	rs148501338	C	G	C	Sox3.mouse_HMG_3	11	1	-	-0.26909204536935105	-4.919266771175489	GAGGAATGGCAGTGACA
chr19	18713227	18713228	chr19:18713228:C:G	rs34482977	C	G	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr19	18894780	18894781	chr19:18894781:T:G	chr19:18894781:T:G	T	G	T	Sox3.mouse_HMG_3	12	1	+	-0.6373424452616792	-7.01841729158359	GGAGAGTGGCAGTCAGA
chr19	19032645	19032646	chr19:19032646:C:T	rs28445835	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr19	19113315	19113316	chr19:19113316:T:G	rs143276472	T	G	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr19	19113357	19113358	chr19:19113358:G:T	rs76070713	G	T	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr19	19113358	19113359	chr19:19113359:C:T	rs114729479	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr19	19304861	19304862	chr19:19304862:C:T	rs57238894	C	T	C	Sox3.mouse_HMG_3	16	1	-	2.6487909146202218	2.612850458167696	GGTGAAAGACAGTCACG
chr19	19319969	19319970	chr19:19319970:G:A	rs954100197	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr19	19385571	19385572	chr19:19385572:T:G	rs952731234	T	G	T	Sox3.mouse_HMG_3	2	1	+	2.587668292734712	-4.161311669136893	GATGCCTGTCAGTCATT
chr19	19385603	19385604	chr19:19385604:A:G	rs924413303	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr19	19492882	19492883	chr19:19492883:C:A	rs4808964	C	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr19	19661654	19661655	chr19:19661655:C:A	rs377319689	C	A	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr19	19661660	19661661	chr19:19661661:A:T	rs60030397	A	T	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr19	19732226	19732227	chr19:19732227:T:A	rs1979263	T	A	a	Sox3.mouse_HMG_3	3	1	+	0.8959396639120787	2.0208692608975616	AATTAATTCCATCCAGA
chr19	19959546	19959547	chr19:19959547:A:G	rs529854852	A	G	a	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr19	20040447	20040448	chr19:20040448:T:C	rs8104703	T	C	N	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr19	20362511	20362512	chr19:20362512:A:C	rs11666639	A	C	.	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr19	20572621	20572622	chr19:20572622:T:G	rs75266071	T	G	.	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr19	20867122	20867123	chr19:20867123:C:T	rs59954926	C	T	c	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr19	20870744	20870745	chr19:20870745:G:A	rs146559270	G	A	-	Sox3.mouse_HMG_3	16	1	-	2.364025579994276	3.230952319466555	AGTGAATGACAGTTAAC
chr19	20898715	20898716	chr19:20898716:A:G	rs7257140	A	G	-	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr19	21056853	21056854	chr19:21056854:T:C	rs116573353	T	C	T	Sox3.mouse_HMG_3	0	1	+	1.8037127395005745	0.3488420941637096	TGTGAATGTCTTTTATA
chr19	21130036	21130037	chr19:21130037:T:C	rs11667905	T	C	t	Sox3.mouse_HMG_3	16	1	-	1.872994125626332	1.9089345820788577	AGGGAATCCTATTCATA
chr19	21289641	21289642	chr19:21289642:G:A	rs540714	G	A	N	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr19	21478849	21478850	chr19:21478850:T:C	rs2562459	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr19	21492111	21492112	chr19:21492112:A:G	rs2562448	A	G	G	Sox3.mouse_HMG_3	8	1	-	0.1654456106551203	0.42756535557122577	TATGAATGTGGGTCACA
chr19	21541515	21541516	chr19:21541516:T:C	rs1520073	T	C	.	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr19	21593529	21593530	chr19:21593530:C:A	rs2292986	C	A	.	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr19	21707536	21707537	chr19:21707537:G:A	rs6511285	G	A	.	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr19	21751670	21751671	chr19:21751671:C:T	rs35336315	C	T	.	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr19	21767992	21767993	chr19:21767993:C:A	rs4467196	C	A	N	Sox3.mouse_HMG_3	9	1	+	5.364108644823125	-0.6901099796851939	AATGAATGTCAGCCACA
chr19	21836641	21836642	chr19:21836642:G:T	rs10407896	G	T	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr19	21836660	21836661	chr19:21836661:T:G	rs374957214	T	G	T	Sox3.mouse_HMG_3	0	1	-	-0.03474994829350253	-0.9332575462837773	AGTGAGCTGCAGTCATG
chr19	21849019	21849020	chr19:21849020:G:T	rs2457794	G	T	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr19	21851171	21851172	chr19:21851172:A:G	rs78138759	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr19	21900419	21900420	chr19:21900420:T:C	rs10406494	T	C	t	Sox3.mouse_HMG_3	14	1	-	1.5473362418591812	-4.834609924567729	TATGTATGAGAGTCAAT
chr19	22054372	22054373	chr19:22054373:G:A	rs372264265	G	A	.	Sox3.mouse_HMG_3	0	1	+	0.6838979578307156	-0.14138594331562837	GCTGAATTTTTTACATG
chr19	22331927	22331928	chr19:22331928:G:A	rs1991830	G	A	N	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr19	22341069	22341070	chr19:22341070:T:C	rs112474384	T	C	N	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr19	22423196	22423197	chr19:22423197:C:T	rs35144209	C	T	.	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr19	22527454	22527455	chr19:22527455:A:G	rs72620602	A	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr19	22527502	22527503	chr19:22527503:G:A	rs11881824	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr19	22822620	22822621	chr19:22822621:G:T	rs421973	G	T	.	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr19	22826613	22826614	chr19:22826614:A:G	rs1038905340	A	G	.	Sox3.mouse_HMG_3	9	1	-	1.8445701568707087	1.8369334798789627	TGTGAACTGTGTTCATG
chr19	23052682	23052683	chr19:23052683:T:C	rs2126615	T	C	-	Sox3.mouse_HMG_3	5	1	+	-1.496223917968063	-1.496223917968063	GGTGATAGGCATTCAGT
chr19	23087105	23087106	chr19:23087106:A:T	rs2963070	A	T	-	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr19	23100308	23100309	chr19:23100309:G:A	rs2935433	G	A	-	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr19	23312595	23312596	chr19:23312596:A:C	rs17490758	A	C	-	Sox3.mouse_HMG_3	9	1	-	5.595307038499741	0.24774135413343013	TATGTATGATAGTCACA
chr19	23338435	23338436	chr19:23338436:G:A	rs55666470	G	A	-	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr19	23513667	23513668	chr19:23513668:A:T	rs80059906	A	T	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr19	23577882	23577883	chr19:23577883:C:T	rs73021999	C	T	c	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr19	23685809	23685810	chr19:23685810:T:C	rs77391742	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr19	23713488	23713489	chr19:23713489:G:C	rs1002544417	G	C	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr19	23784390	23784391	chr19:23784391:C:G	rs7249401	C	G	C	Sox3.mouse_HMG_3	1	1	-	1.9189665497850188	0.8422369723664151	TGTGGAGTGCATTCATG
chr19	24075740	24075741	chr19:24075741:A:C	rs12976145	A	C	A	Sox3.mouse_HMG_3	2	1	-	10.293642257232548	3.544662295360946	GGTGAATTCTAGTCAGA
chr19	27349410	27349411	chr19:27349411:T:C	rs111307419	T	C	.	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr19	27365158	27365159	chr19:27365159:G:A	rs8187187	G	A	.	Sox3.mouse_HMG_3	12	1	+	-1.201882379636065	-0.933618393041385	TGTGAAATGCATGCAGG
chr19	27708284	27708285	chr19:27708285:G:A	rs11670647	G	A	.	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr19	27766958	27766959	chr19:27766959:T:C	rs4805575	T	C	c	Sox3.mouse_HMG_3	9	1	+	-0.4687210219228388	-0.4763576989145848	TTTGAATGCTTTCCAGG
chr19	27768587	27768588	chr19:27768588:G:A	rs8111829	G	A	g	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr19	27894359	27894360	chr19:27894360:A:C	rs17620424	A	C	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr19	27963844	27963845	chr19:27963845:C:T	rs10402778	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr19	27972587	27972588	chr19:27972588:A:G	rs73037944	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr19	28034389	28034390	chr19:28034390:T:C	rs1973099	T	C	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr19	28034421	28034422	chr19:28034422:A:G	rs1973100	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr19	28315001	28315002	chr19:28315002:A:G	rs1824151	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr19	28394426	28394427	chr19:28394427:A:G	rs1476762	A	G	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr19	28412721	28412722	chr19:28412722:C:T	rs10414856	C	T	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr19	28424289	28424290	chr19:28424290:T:C	rs12709832	T	C	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr19	28481563	28481564	chr19:28481564:T:G	rs12982921	T	G	T	Sox3.mouse_HMG_3	15	1	+	-0.9640404585304443	-4.086631269623686	GAGGAAGGACATACATG
chr19	28501299	28501300	chr19:28501300:C:T	rs4805225	C	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr19	28501307	28501308	chr19:28501308:G:A	rs4805226	G	A	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr19	28590854	28590855	chr19:28590855:G:T	rs58084028	G	T	G	Sox3.mouse_HMG_3	7	1	-	-0.43015052465365555	-0.7302551171039934	GGTGAATCTCATCCAAT
chr19	28734887	28734888	chr19:28734888:T:C	rs4280366	T	C	.	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr19	28794235	28794236	chr19:28794236:A:G	rs918431	A	G	G	Sox3.mouse_HMG_3	11	1	-	5.053623129913179	-1.030987696188767	AATGAAATATATTCAGC
chr19	28794259	28794260	chr19:28794260:C:T	rs10401729	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr19	28873635	28873636	chr19:28873636:C:T	rs3761107	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr19	28925978	28925979	chr19:28925979:A:C	rs10414321	A	C	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr19	28947426	28947427	chr19:28947427:T:C	rs1836028	T	C	C	Sox3.mouse_HMG_3	2	1	+	1.4956230997344866	-5.110256018496445	AATGGATGTTAGTAATC
chr19	28947427	28947428	chr19:28947428:G:A	rs1836029	G	A	A	Sox3.mouse_HMG_3	3	1	+	1.4956230997344866	-4.285941787794744	AATGGATGTTAGTAATC
chr19	29052883	29052884	chr19:29052884:C:T	rs934431	C	T	T	Sox3.mouse_HMG_3	0	1	-	3.6300892359008916	2.804805334754546	GATGATTTATATTCCTT
chr19	29162381	29162382	chr19:29162382:G:A	rs1990766	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr19	29171670	29171671	chr19:29171671:G:T	rs73526451	G	T	G	Sox3.mouse_HMG_3	4	1	-	2.20190636428529	8.952447872404676	AATGCATGACATTTAAG
chr19	29218104	29218105	chr19:29218105:G:A	rs759628	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr19	29258678	29258679	chr19:29258679:C:T	rs4805359	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr19	29288745	29288746	chr19:29288746:G:C	rs7249738	G	C	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr19	29346343	29346344	chr19:29346344:C:T	rs10409965	C	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr19	29382894	29382895	chr19:29382895:C:A	rs8110676	C	A	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr19	29393921	29393922	chr19:29393922:G:C	rs554253061	G	C	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr19	29397783	29397784	chr19:29397784:C:T	rs73537194	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr19	29428298	29428299	chr19:29428299:A:G	rs873859	A	G	G	Sox3.mouse_HMG_3	5	1	+	3.3569665062320326	-3.1318684158388304	ACAGAATGCTATTCACA
chr19	29428317	29428318	chr19:29428318:C:T	rs8107574	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr19	29625221	29625222	chr19:29625222:G:A	rs79583940	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr19	29625268	29625269	chr19:29625269:A:G	rs891062	A	G	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr19	29691478	29691479	chr19:29691479:A:G	rs35084398	A	G	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr19	29691484	29691485	chr19:29691485:C:T	rs34473410	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr19	29871087	29871088	chr19:29871088:G:T	rs255270	G	T	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr19	30165700	30165701	chr19:30165701:C:T	rs79415137	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr19	30265012	30265013	chr19:30265013:G:A	rs78409402	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr19	30340249	30340250	chr19:30340250:A:G	rs10416392	A	G	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr19	30348849	30348850	chr19:30348850:G:A	rs117389314	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr19	30349342	30349343	chr19:30349343:G:T	rs1433078	G	T	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr19	30364743	30364744	chr19:30364744:G:A	rs1125867	G	A	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr19	30408374	30408375	chr19:30408375:A:G	rs10425871	A	G	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr19	30553936	30553937	chr19:30553937:G:C	rs11673135	G	C	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr19	30586355	30586356	chr19:30586356:G:T	rs6510171	G	T	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr19	30708075	30708076	chr19:30708076:T:G	rs34819865	T	G	G	Sox3.mouse_HMG_3	10	1	-	4.249044078270155	-2.5020074069113143	TATTAATTATATTCTTG
chr19	30721181	30721182	chr19:30721182:A:G	rs12981643	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr19	30784109	30784110	chr19:30784110:A:G	rs1125518	A	G	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr19	30784145	30784146	chr19:30784146:A:G	rs1125519	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr19	30784147	30784148	chr19:30784148:G:T	rs1125520	G	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr19	30911514	30911515	chr19:30911515:G:A	rs530998277	G	A	G	Sox3.mouse_HMG_3	0	1	+	-1.4664972010612274	-2.2917811022075716	GAAGGATGCCTGTCATG
chr19	31074079	31074080	chr19:31074080:G:A	rs138101116	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr19	31224159	31224160	chr19:31224160:C:T	rs4804957	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr19	31269722	31269723	chr19:31269723:G:T	rs1496625	G	T	G	Sox3.mouse_HMG_3	8	1	+	-0.30324503065116726	-1.0081474442452052	GTTGAAATGCAGTAATT
chr19	31317719	31317720	chr19:31317720:G:A	rs76292782	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr19	31348088	31348089	chr19:31348089:C:T	rs62102623	C	T	C	Sox3.mouse_HMG_3	1	1	+	1.5194861865443994	2.7262688922111993	TCTGAGTGTTACTCATA
chr19	31348089	31348090	chr19:31348090:T:C	rs557197967	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.5194861865443994	-5.086392931686533	TCTGAGTGTTACTCATA
chr19	31376714	31376715	chr19:31376715:T:C	rs6510198	T	C	C	Sox3.mouse_HMG_3	0	1	+	0.8868784548254038	-0.5679921905114627	TGAGAATTACAGGCATG
chr19	31376735	31376736	chr19:31376736:A:G	rs67808363	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr19	31383858	31383859	chr19:31383859:A:G	rs3095746	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr19	31400610	31400611	chr19:31400611:G:C	rs2160753	G	C	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr19	31438584	31438585	chr19:31438585:C:T	rs4473304	C	T	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr19	31562150	31562151	chr19:31562151:C:A	rs10420065	C	A	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr19	31724602	31724603	chr19:31724603:A:G	rs437933	A	G	G	Sox3.mouse_HMG_3	13	1	+	0.7167032496616654	0.4920793131770216	CATGCATGGCAGTAAAG
chr19	31818981	31818982	chr19:31818982:C:T	rs10405473	C	T	C	Sox3.mouse_HMG_3	8	1	+	4.169347634326866	3.90722788941076	GAAAAATGCTATTCAGA
chr19	31995804	31995805	chr19:31995805:T:G	rs7507934	T	G	T	Sox3.mouse_HMG_3	12	1	+	2.0813910445098474	-4.299683801812063	TTAGAAATACATTCATG
chr19	32037569	32037570	chr19:32037570:A:C	rs1008571	A	C	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr19	32104033	32104034	chr19:32104034:A:T	rs6510223	A	T	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr19	32106389	32106390	chr19:32106390:T:G	rs8113804	T	G	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr19	32188817	32188818	chr19:32188818:A:T	rs12975234	A	T	a	Sox3.mouse_HMG_3	2	1	-	1.9170653254432353	-3.810263388896387	TTTAAATTTTCTTCATA
chr19	32237602	32237603	chr19:32237603:T:G	chr19:32237603:T:G	T	G	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr19	32289666	32289667	chr19:32289667:A:G	rs1434620764	A	G	A	Sox3.mouse_HMG_3	5	1	+	2.38149098073446	-4.1073439413364055	CATTAAGTACATTCATA
chr19	32343863	32343864	chr19:32343864:C:G	rs759617	C	G	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr19	32374157	32374158	chr19:32374158:G:T	rs57382133	G	T	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr19	32561029	32561030	chr19:32561030:G:T	rs10411677	G	T	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr19	32567608	32567609	chr19:32567609:G:A	rs74844669	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr19	32682454	32682455	chr19:32682455:T:C	chr19:32682455:T:C	T	C	T	Sox3.mouse_HMG_3	6	1	+	2.3893670427148335	-4.218583598825965	AATGAATGCTTTTTAAG
chr19	32699356	32699357	chr19:32699357:C:T	rs35709439	C	T	c	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr19	32699378	32699379	chr19:32699379:T:C	rs6510279	T	C	C	Sox3.mouse_HMG_3	11	1	+	1.3171588804535361	-4.76745194564841	TCAGAGTTCCATTCATG
chr19	32837667	32837668	chr19:32837668:T:C	rs116252002	T	C	T	Sox3.mouse_HMG_3	1	1	-	1.2692154100940423	-1.8309145263432511	CATTAAAGGCAGTCATT
chr19	32837676	32837677	chr19:32837677:A:G	rs9676558	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr19	32868884	32868885	chr19:32868885:A:T	rs6510301	A	T	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr19	32953160	32953161	chr19:32953161:G:A	rs4805830	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr19	33038074	33038075	chr19:33038075:G:T	rs75693963	G	T	G	Sox3.mouse_HMG_3	16	1	+	3.4893702832738676	2.3024407670688456	GCCGAATGCCAGTCAGG
chr19	33063081	33063082	chr19:33063082:A:G	rs73926233	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr19	33172282	33172283	chr19:33172283:T:G	rs10422125	T	G	T	Sox3.mouse_HMG_3	6	1	+	8.109849357428834	1.3587978722473624	GTTGAATGACATTCCTT
chr19	33180265	33180266	chr19:33180266:C:T	rs6510364	C	T	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr19	33216799	33216800	chr19:33216800:G:A	rs7508758	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr19	33252091	33252092	chr19:33252092:T:G	rs78476878	T	G	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr19	33280858	33280859	chr19:33280859:C:A	rs75454155	C	A	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr19	33397177	33397178	chr19:33397178:G:A	rs117490768	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr19	33440914	33440915	chr19:33440915:G:A	rs11669066	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr19	33456819	33456820	chr19:33456820:C:T	rs7256583	C	T	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr19	33469450	33469451	chr19:33469451:C:T	rs76517094	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr19	33469489	33469490	chr19:33469490:T:C	rs10404460	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr19	33475165	33475166	chr19:33475166:G:C	rs11673682	G	C	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr19	33478084	33478085	chr19:33478085:T:A	rs61748998	T	A	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr19	33645639	33645640	chr19:33645640:G:A	rs59728719	G	A	G	Sox3.mouse_HMG_3	0	1	+	-0.43778124418937403	-1.263065145335718	GGTGAAGGACATACAGG
chr19	33659378	33659379	chr19:33659379:A:G	rs12983177	A	G	A	Sox3.mouse_HMG_3	10	1	+	0.7882231178785746	-5.819727523662223	AATGACTTCTATTGAGA
chr19	33660315	33660316	chr19:33660316:C:T	rs112000775	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr19	33784342	33784343	chr19:33784343:T:C	rs285682	T	C	C	Sox3.mouse_HMG_3	8	1	+	-0.9402903006720666	-0.6781705557559607	GATGGAGGTTATGCATG
chr19	34259661	34259662	chr19:34259662:G:T	rs11084762	G	T	g	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr19	34371240	34371241	chr19:34371241:C:G	rs529308707	C	G	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr19	34476952	34476953	chr19:34476953:C:A	rs7254959	C	A	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr19	34712902	34712903	chr19:34712903:G:A	rs112049596	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr19	34749248	34749249	chr19:34749249:G:T	rs6510448	G	T	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr19	34943333	34943334	chr19:34943334:A:G	rs1811	A	G	G	Sox3.mouse_HMG_3	10	1	+	-0.4909934307878936	-7.09894407232869	CGTGAATGTCAGGAATA
chr19	35164691	35164692	chr19:35164692:C:T	rs78794409	C	T	N	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr19	35180587	35180588	chr19:35180588:A:G	rs9304868	A	G	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr19	35206134	35206135	chr19:35206135:A:G	rs553038182	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr19	35233096	35233097	chr19:35233097:A:C	rs11669258	A	C	c	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr19	35233120	35233121	chr19:35233121:G:A	rs10422195	G	A	G	Sox3.mouse_HMG_3	11	1	-	0.9608218226582548	7.045432648760198	ACTGAATTGTACTCCTG
chr19	35396120	35396121	chr19:35396121:C:T	rs71352989	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr19	35431128	35431129	chr19:35431129:A:G	rs73039354	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr19	35483299	35483300	chr19:35483300:G:A	rs8111522	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr19	35757842	35757843	chr19:35757843:C:G	chr19:35757843:C:G	C	G	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr19	36111826	36111827	chr19:36111827:G:C	rs1003470	G	C	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr19	36939293	36939294	chr19:36939294:C:G	rs113610365	C	G	C	Sox3.mouse_HMG_3	13	1	+	0.5365849056130257	-6.070675704848994	GATGAAGTCCATTCTGT
chr19	37668566	37668567	chr19:37668567:A:G	chr19:37668567:A:G	A	G	a	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr19	37903253	37903254	chr19:37903254:T:A	rs137942447	T	A	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr19	37929765	37929766	chr19:37929766:C:T	rs73029180	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr19	37932672	37932673	chr19:37932673:G:A	rs530351222	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr19	38095834	38095835	chr19:38095835:G:A	rs1654364	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr19	38245163	38245164	chr19:38245164:A:T	rs11667256	A	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr19	38258272	38258273	chr19:38258273:G:A	rs11668070	G	A	A	Sox3.mouse_HMG_3	11	1	+	4.653271949886598	0.0030972240804589823	AAAAAATTGCAGTCATG
chr19	38426454	38426455	chr19:38426455:T:C	rs17640544	T	C	T	Sox3.mouse_HMG_3	11	1	+	3.717945751164257	-2.3666650749376883	CATGACTGATATTTATG
chr19	38658625	38658626	chr19:38658626:T:G	rs115270880	T	G	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr19	38674845	38674846	chr19:38674846:C:A	rs532563779	C	A	C	Sox3.mouse_HMG_3	7	1	-	0.8130593446415957	-0.03697359758847529	CCTGAATGGTAGGCACA
chr19	38674866	38674867	chr19:38674867:G:C	rs999046460	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr19	38893589	38893590	chr19:38893590:G:A	rs145562881	G	A	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr19	38930392	38930393	chr19:38930393:G:A	chr19:38930393:G:A	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr19	39078741	39078742	chr19:39078742:G:C	rs393559	G	C	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr19	39078756	39078757	chr19:39078757:G:A	rs115214039	G	A	G	Sox3.mouse_HMG_3	9	1	-	0.1401710138974468	0.14780769088919277	GCTGAATCACGGTCATA
chr19	39401761	39401762	chr19:39401762:C:T	rs745716005	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr19	39539345	39539346	chr19:39539346:C:T	rs8105143	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr19	39644172	39644173	chr19:39644173:T:A	rs7258408	T	A	-	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr19	39661981	39661982	chr19:39661982:G:T	rs6508899	G	T	-	Sox3.mouse_HMG_3	13	1	-	-0.025647547874147136	-6.408284221851523	GATAAGTTGTAGTCACA
chr19	39685188	39685189	chr19:39685189:A:G	rs7251304	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr19	39685196	39685197	chr19:39685197:G:A	rs7251631	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr19	39755049	39755050	chr19:39755050:T:C	rs7248018	T	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr19	39913650	39913651	chr19:39913651:A:G	rs12459958	A	G	.	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr19	39914175	39914176	chr19:39914176:C:T	rs35922811	C	T	.	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr19	39943283	39943284	chr19:39943284:T:C	rs3826919	T	C	.	Sox3.mouse_HMG_3	12	1	+	3.902304956392607	-2.29054861100816	GAGGAATGCTTGTCATG
chr19	40229757	40229758	chr19:40229758:A:G	rs73933225	A	G	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr19	40303784	40303785	chr19:40303785:C:T	rs58502633	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr19	40303790	40303791	chr19:40303791:G:A	rs189357879	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr19	40726306	40726307	chr19:40726307:C:G	rs141182844	C	G	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr19	40735521	40735522	chr19:40735522:C:T	rs190529577	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr19	40818407	40818408	chr19:40818408:T:C	rs28554014	T	C	C	Sox3.mouse_HMG_3	4	1	-	1.5911277197977993	-4.791689008196268	TGAGAATGAGAGTCATT
chr19	40924245	40924246	chr19:40924246:G:T	rs34418474	G	T	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr19	41018181	41018182	chr19:41018182:A:G	rs707265	A	G	g	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr19	41175796	41175797	chr19:41175797:C:T	rs114270377	C	T	.	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr19	41521750	41521751	chr19:41521751:A:G	rs111882742	A	G	-	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr19	41702542	41702543	chr19:41702543:A:G	rs112886557	A	G	N	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr19	41719604	41719605	chr19:41719605:C:T	rs113199182	C	T	N	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr19	41727420	41727421	chr19:41727421:G:A	rs2002926	G	A	N	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr19	41803051	41803052	chr19:41803052:C:T	rs10419827	C	T	c	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr19	42024693	42024694	chr19:42024694:T:A	rs114155340	T	A	T	Sox3.mouse_HMG_3	5	1	-	2.79332018971085	-3.8141204747678605	CTGGAATGCCAGTCAGA
chr19	42283861	42283862	chr19:42283862:G:T	rs993203773	G	T	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr19	42480983	42480984	chr19:42480984:A:G	rs150645404	A	G	A	Sox3.mouse_HMG_3	16	1	-	0.7639046691919834	-0.10302207028029553	ACAGAATGCCAGTCACT
chr19	42889738	42889739	chr19:42889739:G:A	rs10412183	G	A	-	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr19	42889773	42889774	chr19:42889774:A:G	rs10411688	A	G	-	Sox3.mouse_HMG_3	15	1	+	2.4064031930152683	1.5476218461588478	AATGAATGGGATTAAAC
chr19	42923473	42923474	chr19:42923474:A:G	rs10409077	A	G	.	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr19	42992706	42992707	chr19:42992707:A:G	rs11666257	A	G	.	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr19	43029786	43029787	chr19:43029787:T:G	rs12459659	T	G	.	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr19	43150056	43150057	chr19:43150057:C:A	rs8111681	C	A	.	Sox3.mouse_HMG_3	13	1	+	1.324379401905293	-5.058257272072083	AACGAATGGGATTCAGC
chr19	43285065	43285066	chr19:43285066:A:T	rs62117062	A	T	.	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr19	43439714	43439715	chr19:43439715:G:C	rs74697718	G	C	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr19	43519625	43519626	chr19:43519626:A:G	rs10416091	A	G	A	Sox3.mouse_HMG_3	10	1	-	-1.3265401661163485	-1.3265401661163485	GCTGAATGCTTTACAGG
chr19	43753431	43753432	chr19:43753432:G:A	rs76850817	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr19	43759895	43759896	chr19:43759896:A:G	rs79201345	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr19	44071955	44071956	chr19:44071956:A:G	rs77753219	A	G	A	Sox3.mouse_HMG_3	15	1	+	-0.5284867369854986	-1.3872680838419191	CAGGAAGTGTAGTCAAA
chr19	44071964	44071965	chr19:44071965:G:A	chr19:44071965:G:A	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr19	44071970	44071971	chr19:44071971:T:C	rs531378422	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr19	44103393	44103394	chr19:44103394:G:T	rs28539456	G	T	.	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr19	44113156	44113157	chr19:44113157:A:G	rs2284978	A	G	.	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr19	44346400	44346401	chr19:44346401:G:A	rs2356881	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr19	44449007	44449008	chr19:44449008:A:G	rs73935677	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr19	44477100	44477101	chr19:44477101:G:A	rs954313	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr19	44477157	44477158	chr19:44477158:C:T	rs954314	C	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr19	44613412	44613413	chr19:44613413:G:A	rs846899	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr19	44724392	44724393	chr19:44724393:G:T	rs116579879	G	T	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr19	44808489	44808490	chr19:44808490:G:C	rs8113171	G	C	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr19	44850786	44850787	chr19:44850787:T:G	rs57537848	T	G	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr19	44856448	44856449	chr19:44856449:G:A	rs12462573	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr19	44895907	44895908	chr19:44895908:C:G	rs147707133	C	G	.	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr19	44907186	44907187	chr19:44907187:G:A	rs769450	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr19	45185342	45185343	chr19:45185343:A:G	rs76133116	A	G	A	Sox3.mouse_HMG_3	15	1	-	7.522104035126203	2.807710623411135	TGTGAAGGCCATTCATT
chr19	45301048	45301049	chr19:45301049:T:A	rs344802	T	A	A	Sox3.mouse_HMG_3	11	1	+	1.8092131066619732	-4.275397719439972	GGAGAATGTTTTTCATT
chr19	45376311	45376312	chr19:45376312:C:T	rs180758657	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr19	45641555	45641556	chr19:45641556:G:A	rs28602630	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr19	45809846	45809847	chr19:45809847:C:T	rs16980027	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr19	45824294	45824295	chr19:45824295:T:C	rs8107485	T	C	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr19	45948141	45948142	chr19:45948142:C:A	rs57784658	C	A	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr19	46021037	46021038	chr19:46021038:A:T	rs2041991	A	T	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr19	46285966	46285967	chr19:46285967:C:T	rs2058598	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr19	46367044	46367045	chr19:46367045:T:C	rs2239380	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr19	46375371	46375372	chr19:46375372:G:A	rs4803936	G	A	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr19	46466661	46466662	chr19:46466662:C:T	rs1185960199	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr19	46480836	46480837	chr19:46480837:T:G	rs2288915	T	G	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr19	46480837	46480838	chr19:46480838:T:C	rs2288914	T	C	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr19	46537571	46537572	chr19:46537572:C:T	rs74363583	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr19	46602458	46602459	chr19:46602459:G:T	rs73056645	G	T	G	Sox3.mouse_HMG_3	16	1	+	13.88960768289228	12.702678166687258	AATGAATGGCAGTCAGG
chr19	46618970	46618971	chr19:46618971:T:C	rs1490863573	T	C	T	Sox3.mouse_HMG_3	1	1	-	-1.0364324684176542	-4.136562404854946	TATGATTGCCATTGCTG
chr19	46748672	46748673	chr19:46748673:C:G	rs36215245	C	G	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr19	46881241	46881242	chr19:46881242:A:G	rs311360	A	G	A	Sox3.mouse_HMG_3	0	1	+	1.5155507620828992	2.3408346632292436	AGTGAATGTTCTTAATG
chr19	47093844	47093845	chr19:47093845:T:C	rs10408163	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr19	47109498	47109499	chr19:47109499:G:A	rs186320157	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr19	47296043	47296044	chr19:47296044:T:C	rs7249307	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr19	47296048	47296049	chr19:47296049:T:C	rs7249311	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr19	47391556	47391557	chr19:47391557:G:C	rs1466412900	G	C	G	Sox3.mouse_HMG_3	12	1	+	1.6361544233740886	1.824375702295232	GGTGAATTTTATGTATG
chr19	47788904	47788905	chr19:47788905:C:T	rs187738844	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr19	47809978	47809979	chr19:47809979:A:G	rs6509340	A	G	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr19	48090471	48090472	chr19:48090472:T:C	rs387263	T	C	C	Sox3.mouse_HMG_3	4	1	+	1.4180157764582189	1.2749149328175455	CATGTTTGATATTCAAA
chr19	48091689	48091690	chr19:48091690:G:A	rs1654383	G	A	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr19	48248786	48248787	chr19:48248787:C:T	rs71357811	C	T	C	Sox3.mouse_HMG_3	15	1	-	0.9807893712914159	1.8395707181478365	GATGATGGACATTCAGT
chr19	48256165	48256166	chr19:48256166:T:C	rs988351423	T	C	T	Sox3.mouse_HMG_3	1	1	-	1.5248453933452655	-1.5752845430920255	GATGAATTCCAGAGAAA
chr19	48258166	48258167	chr19:48258167:C:T	rs10853801	C	T	c	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr19	48260491	48260492	chr19:48260492:T:C	rs4802451	T	C	T	Sox3.mouse_HMG_3	15	1	+	11.71400358427437	6.9996101725593	GATTAATGATATTCATA
chr19	48330309	48330310	chr19:48330310:T:G	chr19:48330310:T:G	T	G	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr19	48330350	48330351	chr19:48330351:A:G	rs4893	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr19	48401431	48401432	chr19:48401432:C:G	rs62132014	C	G	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr19	48403453	48403454	chr19:48403454:G:A	rs76754767	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr19	48410920	48410921	chr19:48410921:G:C	rs1654670	G	C	G	Sox3.mouse_HMG_3	11	1	+	-0.9078434259806663	-5.558018151786805	CATGAGAGACAGTCAGA
chr19	48487863	48487864	chr19:48487864:C:T	rs77500809	C	T	C	Sox3.mouse_HMG_3	9	1	+	-0.5801198593906178	-0.5724831823988719	GAAGCATGACCTTCATG
chr19	48510844	48510845	chr19:48510845:C:T	rs57339031	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr19	48510858	48510859	chr19:48510859:C:T	rs62130276	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr19	48735768	48735769	chr19:48735769:T:C	rs418464	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr19	48873149	48873150	chr19:48873150:T:A	rs73589816	T	A	T	Sox3.mouse_HMG_3	0	1	+	-0.6221966272551236	-1.178559674601713	TATGACTCATAGTCACG
chr19	49097519	49097520	chr19:49097520:A:G	rs2387768	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr19	49247950	49247951	chr19:49247951:A:T	rs11666240	A	T	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr19	49284947	49284948	chr19:49284948:T:C	rs2334867	T	C	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr19	49389244	49389245	chr19:49389245:C:T	rs55689129	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr19	49489996	49489997	chr19:49489997:C:T	rs141468307	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr19	49496984	49496985	chr19:49496985:C:T	rs79156527	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr19	49511719	49511720	chr19:49511720:G:A	rs2335534	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr19	49513221	49513222	chr19:49513222:T:G	rs111981233	T	G	-	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr19	49568312	49568313	chr19:49568313:A:G	rs183177634	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr19	49813466	49813467	chr19:49813467:C:A	chr19:49813467:C:A	C	A	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr19	49813481	49813482	chr19:49813482:G:A	chr19:49813482:G:A	G	A	G	Sox3.mouse_HMG_3	3	1	+	2.5096321544248212	-3.2719327331044106	GATGATTTACATTCTAA
chr19	49813496	49813497	chr19:49813497:C:T	rs2286948	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr19	49813500	49813501	chr19:49813501:A:C	chr19:49813501:A:C	A	C	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr19	49908137	49908138	chr19:49908138:C:G	rs11547267	C	G	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr19	49955102	49955103	chr19:49955103:G:A	rs73576651	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr19	49955153	49955154	chr19:49955154:C:T	rs114726949	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr19	50136345	50136346	chr19:50136346:T:G	rs56215721	T	G	-	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr19	50347276	50347277	chr19:50347277:C:T	rs4801830	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr19	50592373	50592374	chr19:50592374:C:A	rs4801840	C	A	-	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr19	50602761	50602762	chr19:50602762:T:C	rs8107374	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr19	50661153	50661154	chr19:50661154:G:A	rs111483219	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr19	50793880	50793881	chr19:50793881:T:C	rs45533637	T	C	t	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr19	51193142	51193143	chr19:51193143:G:C	rs7255167	G	C	-	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr19	51193168	51193169	chr19:51193169:A:G	rs77561443	A	G	-	Sox3.mouse_HMG_3	14	1	+	4.623067926636213	-1.7588782397906977	TATGCAGTGTATTCATA
chr19	51538450	51538451	chr19:51538451:A:G	rs188569618	A	G	a	Sox3.mouse_HMG_3	6	1	-	-0.437788975850282	-7.045739617391078	ATTGTATGCTGTTCAAG
chr19	51555207	51555208	chr19:51555208:C:T	rs10412859	C	T	t	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr19	51586470	51586471	chr19:51586471:G:A	rs4507016	G	A	A	Sox3.mouse_HMG_3	16	1	+	0.21954530492884095	0.1836048484763153	GATAAATGCTCATCATG
chr19	51659802	51659803	chr19:51659803:A:G	rs7248908	A	G	G	Sox3.mouse_HMG_3	9	1	-	1.2237443351813413	1.2161076581895953	GGTGAATGGTACTGAAG
chr19	51681942	51681943	chr19:51681943:G:C	rs12462233	G	C	G	Sox3.mouse_HMG_3	3	1	+	-0.2638970099620632	-7.013387745667114	AGTGAATGGTATAAAGG
chr19	52508649	52508650	chr19:52508650:T:C	rs1676149	T	C	-	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr19	52508652	52508653	chr19:52508653:A:G	rs1677467	A	G	-	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr19	52675750	52675751	chr19:52675751:T:C	rs11084176	T	C	N	Sox3.mouse_HMG_3	6	1	+	0.8101804911489672	-5.797770150391831	AGTGAATTTTGTGCATG
chr19	52692948	52692949	chr19:52692949:C:T	rs4802984	C	T	c	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr19	52954909	52954910	chr19:52954910:A:G	rs138628959	A	G	a	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr19	53004230	53004231	chr19:53004231:C:T	rs111483599	C	T	c	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr19	53004231	53004232	chr19:53004232:G:A	rs10414224	G	A	g	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr19	53422742	53422743	chr19:53422743:C:A	rs149904118	C	A	c	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr19	53508332	53508333	chr19:53508333:C:T	rs2569589	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr19	53522033	53522034	chr19:53522034:C:G	rs8100455	C	G	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr19	53535533	53535534	chr19:53535534:A:C	rs73049596	A	C	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr19	53555676	53555677	chr19:53555677:C:G	rs6509790	C	G	c	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr19	53598906	53598907	chr19:53598907:T:C	rs113582067	T	C	T	Sox3.mouse_HMG_3	6	1	+	5.250426147074706	-1.357524494466089	GATGAATTTCACTCTTG
chr19	53661236	53661237	chr19:53661237:T:C	rs11672417	T	C	T	Sox3.mouse_HMG_3	11	1	+	2.621582528174932	-3.4630282979270124	AAAGAAATCCATTCATC
chr19	53732623	53732624	chr19:53732624:A:C	rs7246017	A	C	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr19	53751805	53751806	chr19:53751806:G:C	rs12985114	G	C	G	Sox3.mouse_HMG_3	3	1	+	-0.08954618522228808	-6.83903692092734	TTTGTTTTACAGTCATG
chr19	53751814	53751815	chr19:53751815:T:A	rs305935	T	A	A	Sox3.mouse_HMG_3	12	1	+	-0.08954618522228808	-6.20235704494952	TTTGTTTTACAGTCATG
chr19	53751835	53751836	chr19:53751836:C:T	rs305936	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr19	53792723	53792724	chr19:53792724:A:G	rs8100285	A	G	G	Sox3.mouse_HMG_3	14	1	+	0.36144356941915623	-6.020502597007755	TTTGGATTACAGGCATG
chr19	53792728	53792729	chr19:53792729:T:C	rs8101161	T	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr19	53792741	53792742	chr19:53792742:C:T	rs28404669	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr19	53842088	53842089	chr19:53842089:T:G	chr19:53842089:T:G	T	G	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr19	53842506	53842507	chr19:53842507:A:T	rs142919166	A	T	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr19	53880603	53880604	chr19:53880604:C:A	rs111164136	C	A	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr19	53888427	53888428	chr19:53888428:T:A	rs307952	T	A	A	Sox3.mouse_HMG_3	14	1	+	-1.1754519192488162	5.206494247178094	GATGACCTGCATTCTTG
chr19	54205429	54205430	chr19:54205430:G:C	rs12983262	G	C	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr19	54228581	54228582	chr19:54228582:T:C	rs71365446	T	C	-	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr19	54248334	54248335	chr19:54248335:C:G	rs73615986	C	G	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr19	54248357	54248358	chr19:54248358:C:G	rs34756386	C	G	C	Sox3.mouse_HMG_3	13	1	+	1.151808107021687	-5.455452503440334	TGTGAAATAGATTCATT
chr19	54250238	54250239	chr19:54250239:C:A	rs11668189	C	A	c	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr19	54274139	54274140	chr19:54274140:G:C	rs557629234	G	C	g	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr19	54281473	54281474	chr19:54281474:T:C	rs117972222	T	C	-	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr19	54315976	54315977	chr19:54315977:C:T	rs3859532	C	T	N	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr19	54362227	54362228	chr19:54362228:C:G	rs2885686	C	G	C	Sox3.mouse_HMG_3	8	1	+	1.8509288189550768	2.2937114876330087	GATTAACTCTAGTCATT
chr19	54684446	54684447	chr19:54684447:G:A	rs79111643	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr19	54741595	54741596	chr19:54741596:C:T	rs601228	C	T	.	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr19	54741636	54741637	chr19:54741637:C:A	rs632031	C	A	.	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr19	54953522	54953523	chr19:54953523:G:A	rs78277837	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr19	54953562	54953563	chr19:54953563:T:C	rs117323208	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr19	55026573	55026574	chr19:55026574:T:C	rs2886412	T	C	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr19	55305406	55305407	chr19:55305407:G:A	rs35949773	G	A	G	Sox3.mouse_HMG_3	8	1	+	0.4303964947522547	-0.1927201524255584	GATGCAGGGGATTCATG
chr19	55391955	55391956	chr19:55391956:C:T	rs7260246	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr19	55420095	55420096	chr19:55420096:G:T	rs75979787	G	T	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr19	55527421	55527422	chr19:55527422:A:G	rs12463219	A	G	a	Sox3.mouse_HMG_3	8	1	-	2.703208265442451	2.965328010358557	TGTGAATGTCATACGTG
chr19	55585172	55585173	chr19:55585173:G:A	rs2864433	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr19	55932839	55932840	chr19:55932840:G:C	rs513576	G	C	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr19	56139998	56139999	chr19:56139999:C:G	rs147824352	C	G	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr19	56218287	56218288	chr19:56218288:T:C	rs8109597	T	C	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr19	56222055	56222056	chr19:56222056:C:A	rs34187696	C	A	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr19	56619238	56619239	chr19:56619239:C:A	rs12985817	C	A	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr19	56699698	56699699	chr19:56699699:A:G	rs34168891	A	G	a	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr19	56706203	56706204	chr19:56706204:A:T	rs56049479	A	T	t	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr19	56706747	56706748	chr19:56706748:C:G	rs2302375	C	G	c	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr19	56991987	56991988	chr19:56991988:C:T	rs76123995	C	T	T	Sox3.mouse_HMG_3	16	1	+	-0.2795737388649402	0.5873530006073387	GCAGAAGTGTATTCATC
chr19	56995565	56995566	chr19:56995566:A:T	rs182227691	A	T	A	Sox3.mouse_HMG_3	6	1	-	2.895398424138952	-3.85565306104252	AATGAATGTTATCTATC
chr19	57004725	57004726	chr19:57004726:G:A	rs77654523	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr19	57348442	57348443	chr19:57348443:A:G	rs2041111	A	G	A	Sox3.mouse_HMG_3	1	1	+	1.5181231753855957	-1.5820067610516961	CAGGAATTATAGGCATG
chr19	57415452	57415453	chr19:57415453:G:A	rs10412943	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr19	57500625	57500626	chr19:57500626:G:A	rs73070961	G	A	g	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr19	57569696	57569697	chr19:57569697:T:C	rs61138724	T	C	C	Sox3.mouse_HMG_3	8	1	-	2.060022256386479	2.6831389035642923	CATGAATTATCCTCATT
chr19	57693819	57693820	chr19:57693820:T:A	rs9304799	T	A	A	Sox3.mouse_HMG_3	10	1	-	0.07604127093358748	-6.675010214247884	AATCAATGACAGACAAT
chr19	57723546	57723547	chr19:57723547:T:C	rs9676736	T	C	T	Sox3.mouse_HMG_3	6	1	+	1.6899764605908971	-4.9179741809499	GATAAATGCCATTTACA
chr19	57792996	57792997	chr19:57792997:A:G	rs7254571	A	G	.	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr19	57861682	57861683	chr19:57861683:A:C	rs60377712	A	C	.	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr19	58311829	58311830	chr19:58311830:G:A	rs58371330	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr19	58311854	58311855	chr19:58311855:T:C	rs61468392	T	C	T	Sox3.mouse_HMG_3	7	1	+	-0.05721841665762517	-5.460629596634944	CAGGAATTCCATACAAT
chr19	58330494	58330495	chr19:58330495:T:C	rs59874238	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr19	58372794	58372795	chr19:58372795:G:T	rs62116388	G	T	t	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr19	58560652	58560653	chr19:58560653:G:A	rs73068321	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr19	58590580	58590581	chr19:58590581:C:T	rs62114700	C	T	c	Sox3.mouse_HMG_3	11	1	+	1.76969361639711	7.854304442499055	CTTGAATTTTACTCAGC
chr2	68493	68494	chr2:68494:T:A	rs300762	T	A	-	Sox3.mouse_HMG_3	11	1	+	2.3098559284945637	-3.774754897607381	AATGAATGTCCTGCAAA
chr2	175620	175621	chr2:175621:C:T	rs113170946	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	564001	564002	chr2:564002:C:A	rs1320363	C	A	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	597001	597002	chr2:597002:G:A	rs17042073	G	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	615818	615819	chr2:615819:G:A	rs17042114	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr2	764255	764256	chr2:764256:T:C	rs76036174	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr2	821384	821385	chr2:821385:T:C	rs34674658	T	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr2	821409	821410	chr2:821410:G:A	rs62104831	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	833291	833292	chr2:833292:A:C	rs62104834	A	C	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	856959	856960	chr2:856960:C:T	rs7572005	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr2	976674	976675	chr2:976675:A:G	rs61246823	A	G	A	Sox3.mouse_HMG_3	14	1	+	1.1683468679154574	-5.213599298511453	GATGAGTGTTGTTCAGT
chr2	1323556	1323557	chr2:1323557:G:A	rs200746342	G	A	-	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr2	1580133	1580134	chr2:1580134:A:C	rs6736890	A	C	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	1580178	1580179	chr2:1580179:G:A	rs6721842	G	A	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	1626537	1626538	chr2:1626538:A:T	rs11692137	A	T	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr2	1803610	1803611	chr2:1803611:G:A	rs79429984	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	2014619	2014620	chr2:2014620:C:A	rs892013025	C	A	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr2	2158559	2158560	chr2:2158560:C:T	rs77246738	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr2	2720414	2720415	chr2:2720415:C:G	rs1026210	C	G	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	2750930	2750931	chr2:2750931:T:C	rs17038881	T	C	T	Sox3.mouse_HMG_3	1	1	+	5.260505564128804	4.053722858462004	ATTGAATTTCATTGATC
chr2	2782039	2782040	chr2:2782040:C:A	rs78286298	C	A	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	2787299	2787300	chr2:2787300:A:G	rs2060485	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr2	3051180	3051181	chr2:3051181:T:C	rs114027154	T	C	T	Sox3.mouse_HMG_3	5	1	-	3.7227611303963117	-2.7660737916745513	AATGAATTTCTTTCTTA
chr2	3105610	3105611	chr2:3105611:T:C	rs6712936	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	3322645	3322646	chr2:3322646:A:G	rs11902010	A	G	a	Sox3.mouse_HMG_3	10	1	+	6.621508405890055	0.013557764349256818	GATGAATTCCATTGACA
chr2	3369213	3369214	chr2:3369214:T:A	rs62119534	T	A	T	Sox3.mouse_HMG_3	11	1	+	8.95527898654715	2.870668160445204	AATCAATTTCATTCATT
chr2	3462613	3462614	chr2:3462614:C:T	rs10198978	C	T	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	3658391	3658392	chr2:3658392:C:A	rs116080781	C	A	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	3674659	3674660	chr2:3674660:T:C	rs12711967	T	C	C	Sox3.mouse_HMG_3	1	1	-	3.435547612132053	0.3354176756947598	AATGGAGGCCAGTCATG
chr2	3780502	3780503	chr2:3780503:T:C	rs17018009	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	3873094	3873095	chr2:3873095:C:A	rs17509530	C	A	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	3960724	3960725	chr2:3960725:T:A	rs12232978	T	A	T	Sox3.mouse_HMG_3	8	1	-	1.7604236782862548	1.67863791187003	AATGCATTAGATTCAGG
chr2	4107600	4107601	chr2:4107601:T:A	rs7578138	T	A	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr2	4248626	4248627	chr2:4248627:A:G	rs7576476	A	G	G	Sox3.mouse_HMG_3	15	1	+	5.852317935967384	4.993536589110963	AGTGAATGACATTTAAG
chr2	4551763	4551764	chr2:4551764:A:T	rs13391917	A	T	A	Sox3.mouse_HMG_3	10	1	+	2.5548412372240588	-4.196210247957413	AAAGGATGACATTCAGA
chr2	4594236	4594237	chr2:4594237:A:G	rs10196371	A	G	G	Sox3.mouse_HMG_3	10	1	+	2.167032808843665	-4.440917832697132	GTTGATTTAAATTCATG
chr2	4777771	4777772	chr2:4777772:C:T	rs13431987	C	T	C	Sox3.mouse_HMG_3	4	1	+	0.49174965176667806	0.6348504954073505	CTTGCATGGCAGTCACT
chr2	4914597	4914598	chr2:4914598:C:T	rs7595835	C	T	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr2	5329174	5329175	chr2:5329175:C:T	rs1524491	C	T	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr2	5954682	5954683	chr2:5954683:A:G	rs56211642	A	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	6011872	6011873	chr2:6011873:A:C	rs2609195	A	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr2	6012000	6012001	chr2:6012001:G:A	rs2693833	G	A	A	Sox3.mouse_HMG_3	11	1	+	5.335419294368363	0.685244568562226	GGTCAATTATAGTCATT
chr2	6140191	6140192	chr2:6140192:G:T	rs2609145	G	T	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr2	6193948	6193949	chr2:6193949:A:G	rs6731920	A	G	G	Sox3.mouse_HMG_3	7	1	-	2.6150599825321414	-2.7883511974451767	GATGAATTGTACTGAGG
chr2	6470411	6470412	chr2:6470412:T:C	rs306167	T	C	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	6535410	6535411	chr2:6535411:T:C	rs35205468	T	C	T	Sox3.mouse_HMG_3	2	1	+	2.1846139461766185	-4.421265172054312	GATGCTTTATATTCAAG
chr2	6657961	6657962	chr2:6657962:T:A	rs736566	T	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr2	6693108	6693109	chr2:6693109:A:C	rs308002	A	C	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	6781149	6781150	chr2:6781150:T:G	rs77952257	T	G	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	6798176	6798177	chr2:6798177:A:G	rs4458187	A	G	G	Sox3.mouse_HMG_3	5	1	+	12.172192413704622	5.683357491633755	GCTGAATGACATTCAAA
chr2	6881217	6881218	chr2:6881218:C:T	rs56396706	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	7023277	7023278	chr2:7023278:A:T	rs116052978	A	T	A	Sox3.mouse_HMG_3	5	1	-	0.30511540027701334	6.9125560647557265	GATGATTGGCAGTGAAC
chr2	7049528	7049529	chr2:7049529:T:G	rs309291	T	G	G	Sox3.mouse_HMG_3	14	1	-	4.515199167251637	-1.8667469991752725	GTTGAATTTTTGTCATC
chr2	7062364	7062365	chr2:7062365:T:G	rs309271	T	G	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr2	7094512	7094513	chr2:7094513:A:G	rs142716311	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	7472720	7472721	chr2:7472721:A:G	rs115877758	A	G	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	7584607	7584608	chr2:7584608:C:T	rs1519927	C	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr2	7667113	7667114	chr2:7667114:T:C	rs12615861	T	C	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr2	7757947	7757948	chr2:7757948:G:A	rs80000015	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	7867971	7867972	chr2:7867972:A:G	rs142728575	A	G	a	Sox3.mouse_HMG_3	15	1	+	1.994879159698987	1.1360978128425665	AGTCAATTGCAGTCAAC
chr2	7870286	7870287	chr2:7870287:G:C	rs968965	G	C	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	7870340	7870341	chr2:7870341:T:C	rs78580613	T	C	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	8120370	8120371	chr2:8120371:T:C	rs11687489	T	C	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr2	8154552	8154553	chr2:8154553:C:A	chr2:8154553:C:A	C	A	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr2	8154552	8154553	chr2:8154553:C:T	rs114207055	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr2	8154580	8154581	chr2:8154581:G:A	rs74360315	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	8543055	8543056	chr2:8543056:G:A	rs6748522	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	8637105	8637106	chr2:8637106:G:A	rs139618725	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	8669615	8669616	chr2:8669616:A:G	rs1275937896	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	8684848	8684849	chr2:8684849:A:G	rs546327466	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	8684856	8684857	chr2:8684857:C:T	rs3900795	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	8758198	8758199	chr2:8758199:A:G	rs16866788	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr2	8805509	8805510	chr2:8805510:A:G	rs1438001	A	G	G	Sox3.mouse_HMG_3	9	1	-	2.052042314902325	2.044405637910579	GATGAAATATAGTCTTT
chr2	8807286	8807287	chr2:8807287:T:C	rs1212674436	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr2	8876903	8876904	chr2:8876904:T:C	rs998967	T	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	9050565	9050566	chr2:9050566:T:C	rs57396441	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr2	9050568	9050569	chr2:9050569:A:G	rs10188210	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr2	9239911	9239912	chr2:9239912:T:G	rs2709565	T	G	G	Sox3.mouse_HMG_3	6	1	+	3.0502973090471697	-3.7007541761343026	GATGAGTTTTTGTCATG
chr2	9287014	9287015	chr2:9287015:G:A	rs115705572	G	A	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	9332527	9332528	chr2:9332528:G:A	rs146411567	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	9332531	9332532	chr2:9332532:T:C	rs28485612	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	9445070	9445071	chr2:9445071:C:G	rs10929582	C	G	C	Sox3.mouse_HMG_3	13	1	+	4.425785731192608	-2.1814748792694116	CATTAATTATATTCACA
chr2	9594372	9594373	chr2:9594373:A:G	rs7567811	A	G	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr2	9780608	9780609	chr2:9780609:C:T	rs61148948	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	9780609	9780610	chr2:9780610:A:G	rs4669456	A	G	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	9805669	9805670	chr2:9805670:A:G	rs74864285	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr2	9805706	9805707	chr2:9805707:G:A	rs189673928	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	9885433	9885434	chr2:9885434:G:A	rs411413	G	A	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr2	9971089	9971090	chr2:9971090:A:G	rs11883961	A	G	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr2	10003772	10003773	chr2:10003773:A:G	rs930137	A	G	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	10010414	10010415	chr2:10010415:G:A	rs1378469550	G	A	G	Sox3.mouse_HMG_3	2	1	-	8.920331918925687	15.526211037156617	GACGAATGACATTCAGG
chr2	10138750	10138751	chr2:10138751:T:C	rs16855510	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	10318905	10318906	chr2:10318906:A:G	rs1861232	A	G	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	10342700	10342701	chr2:10342701:C:T	rs116116221	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	10380660	10380661	chr2:10380661:T:C	rs11690273	T	C	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	10460680	10460681	chr2:10460681:C:G	rs73914087	C	G	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	10566361	10566362	chr2:10566362:A:T	rs35454239	A	T	T	Sox3.mouse_HMG_3	11	1	-	7.103430793019556	1.018819966917612	ATTGAATGCTTTTCATT
chr2	10819165	10819166	chr2:10819166:C:A	rs56321198	C	A	C	Sox3.mouse_HMG_3	6	1	-	2.451192696364406	9.202244181545876	AATGAGGTCTAGTCATA
chr2	10930846	10930847	chr2:10930847:A:G	rs111897344	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	10947302	10947303	chr2:10947303:C:T	rs9677245	C	T	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr2	11014143	11014144	chr2:11014144:C:A	rs12472523	C	A	C	Sox3.mouse_HMG_3	9	1	+	3.267547242112321	-2.7866713823959985	GATGAGTTACGGTCATG
chr2	11090259	11090260	chr2:11090260:G:A	rs11686282	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr2	11116906	11116907	chr2:11116907:T:C	rs4669693	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr2	11120508	11120509	chr2:11120509:T:C	rs73187661	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr2	11160742	11160743	chr2:11160743:T:C	rs6432182	T	C	C	Sox3.mouse_HMG_3	2	1	+	8.342500019655443	1.7366209014245122	TGTGAATGGTATGCATT
chr2	11213073	11213074	chr2:11213074:T:C	rs7598032	T	C	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	11254221	11254222	chr2:11254222:G:A	rs114887242	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	11254226	11254227	chr2:11254227:C:T	rs12479227	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	11364789	11364790	chr2:11364790:C:T	rs4641909	C	T	T	Sox3.mouse_HMG_3	3	1	-	-0.10805609539052297	-5.889620982919754	ACTGCATGGCAGCCATG
chr2	11378373	11378374	chr2:11378374:G:C	rs6739988	G	C	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	11392227	11392228	chr2:11392228:C:T	rs13001631	C	T	C	Sox3.mouse_HMG_3	9	1	+	1.0701663312618341	1.07780300825358	CACCAATGGCATTCAGG
chr2	11435214	11435215	chr2:11435215:G:A	rs1328034621	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr2	11435252	11435253	chr2:11435253:G:A	rs114034384	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr2	11597964	11597965	chr2:11597965:T:C	rs1435547	T	C	C	Sox3.mouse_HMG_3	2	1	+	1.329260598648238	-5.276618519582695	CATGTGTGGCATTCAGG
chr2	11713786	11713787	chr2:11713787:G:A	rs4614906	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr2	11851065	11851066	chr2:11851066:A:G	rs17545676	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr2	11933323	11933324	chr2:11933324:G:C	rs7598815	G	C	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	12059715	12059716	chr2:12059716:C:T	rs576121651	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr2	12177341	12177342	chr2:12177342:C:T	chr2:12177342:C:T	C	T	C	Sox3.mouse_HMG_3	12	1	-	3.5824618607547505	3.8507258473494304	AACGAATGCCAGGCATG
chr2	12177342	12177343	chr2:12177343:C:T	rs574603301	C	T	C	Sox3.mouse_HMG_3	11	1	-	3.5824618607547505	-1.0677128650513878	AACGAATGCCAGGCATG
chr2	12177362	12177363	chr2:12177363:G:A	rs531816295	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr2	12617935	12617936	chr2:12617936:C:T	rs12464627	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	12694043	12694044	chr2:12694044:G:A	rs477599	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr2	12787803	12787804	chr2:12787804:T:C	rs78176325	T	C	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	12808351	12808352	chr2:12808352:A:G	rs16859383	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	12951889	12951890	chr2:12951890:A:G	rs779396	A	G	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr2	12999954	12999955	chr2:12999955:A:G	rs1516289	A	G	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	13051150	13051151	chr2:13051151:T:C	rs16859684	T	C	C	Sox3.mouse_HMG_3	2	1	+	1.6937374334622068	-4.912141684768724	GATGACTTATATTAAGG
chr2	13777790	13777791	chr2:13777791:T:C	rs56040739	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	13858155	13858156	chr2:13858156:C:T	rs2380544	C	T	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr2	13920224	13920225	chr2:13920225:A:G	rs76223425	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	13949326	13949327	chr2:13949327:C:A	rs16861006	C	A	A	Sox3.mouse_HMG_3	3	1	-	2.662770712839568	-4.243723771675147	TATGTATTTTTGTCATG
chr2	14187475	14187476	chr2:14187476:A:G	rs6432445	A	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	14189877	14189878	chr2:14189878:A:G	rs4144356	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	14450757	14450758	chr2:14450758:T:G	rs1515937	T	G	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr2	14577993	14577994	chr2:14577994:A:G	rs2380620	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	14583283	14583284	chr2:14583284:T:C	rs13429580	T	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr2	15044042	15044043	chr2:15044043:T:C	rs6711002	T	C	T	Sox3.mouse_HMG_3	14	1	-	9.653182128057992	3.2712359616310795	TATGAACTTCATTCATT
chr2	15224189	15224190	chr2:15224190:G:A	rs555653808	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	15739106	15739107	chr2:15739107:C:T	rs72782871	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	15905940	15905941	chr2:15905941:C:T	rs73915537	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr2	16537625	16537626	chr2:16537626:A:G	rs2067702	A	G	A	Sox3.mouse_HMG_3	8	1	-	1.983493902683338	2.245613647599444	TATGAAAGTCATACAAT
chr2	16624049	16624050	chr2:16624050:G:A	rs1024927	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	16624055	16624056	chr2:16624056:C:A	rs1024926	C	A	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	16626109	16626110	chr2:16626110:G:T	rs11892967	G	T	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	16646237	16646238	chr2:16646238:A:C	rs13402845	A	C	C	Sox3.mouse_HMG_3	2	1	-	1.7776857042702816	-4.971294257601322	GATGAACTCTAGACATC
chr2	16661390	16661391	chr2:16661391:T:C	rs72777961	T	C	T	Sox3.mouse_HMG_3	2	1	+	4.316259401669295	-2.2896197165616377	TATGCTTTCCATTCATA
chr2	16751177	16751178	chr2:16751178:G:A	rs59772038	G	A	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	17057777	17057778	chr2:17057778:A:G	rs62122856	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr2	17206932	17206933	chr2:17206933:T:C	rs13031329	T	C	t	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	17346383	17346384	chr2:17346384:A:G	rs62125613	A	G	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	17799772	17799773	chr2:17799773:G:C	rs898842	G	C	G	Sox3.mouse_HMG_3	16	1	-	3.0369943203909044	5.090850576068205	TATGTTTGTTATTCATC
chr2	17800416	17800417	chr2:17800417:G:T	rs300159	G	T	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	17800460	17800461	chr2:17800461:C:T	rs13427873	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr2	17827231	17827232	chr2:17827232:C:G	rs7355608	C	G	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr2	17864970	17864971	chr2:17864971:A:G	rs7582717	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr2	18320101	18320102	chr2:18320102:G:A	rs1516916	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	18339382	18339383	chr2:18339383:G:A	rs11096530	G	A	A	Sox3.mouse_HMG_3	3	1	+	3.284311161229601	-2.4972537262996295	AATGAAGTGTATTCTTT
chr2	18411785	18411786	chr2:18411786:A:G	rs16984932	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	18445013	18445014	chr2:18445014:T:C	rs13393878	T	C	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	18455487	18455488	chr2:18455488:T:C	rs116057518	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	18548880	18548881	chr2:18548881:A:G	rs7559634	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	18627413	18627414	chr2:18627414:C:T	rs73228526	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	18630126	18630127	chr2:18630127:A:G	rs147806188	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	18630299	18630300	chr2:18630300:A:G	rs16985353	A	G	A	Sox3.mouse_HMG_3	6	1	-	7.783251618141187	1.1753009766003906	TCTGAATTGCATCCATG
chr2	18648156	18648157	chr2:18648157:A:G	rs13033507	A	G	a	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr2	18738978	18738979	chr2:18738979:T:C	rs1451607301	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	18762660	18762661	chr2:18762661:T:C	rs7592546	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	18998677	18998678	chr2:18998678:A:C	chr2:18998678:A:C	A	C	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	19127898	19127899	chr2:19127899:C:A	rs116683192	C	A	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	19127917	19127918	chr2:19127918:A:G	rs111441235	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.4255563990348974	-0.6745735374023953	TATGAGTGGTGGTCATC
chr2	19368673	19368674	chr2:19368674:C:A	rs17441606	C	A	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	19506197	19506198	chr2:19506198:T:G	rs1851411	T	G	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr2	19570057	19570058	chr2:19570058:A:G	rs138019145	A	G	A	Sox3.mouse_HMG_3	8	1	-	1.7208234520034833	1.9829431969195892	AATAAATGTCCGTCATC
chr2	19724347	19724348	chr2:19724348:A:C	rs4666541	A	C	C	Sox3.mouse_HMG_3	4	1	+	2.7533052332146104	-3.9972362749047727	CATGAGTTTCCTTCATG
chr2	19759861	19759862	chr2:19759862:T:C	rs12478055	T	C	T	Sox3.mouse_HMG_3	2	1	+	3.37661521538712	-3.229263902843811	GATAAATTGTATACAGA
chr2	19768305	19768306	chr2:19768306:C:T	rs10469799	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr2	19849939	19849940	chr2:19849940:A:G	rs751098	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	19933459	19933460	chr2:19933460:C:T	rs2293669	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	20138012	20138013	chr2:20138013:T:C	rs6531210	T	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	20138014	20138015	chr2:20138015:T:G	rs6531211	T	G	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	20163904	20163905	chr2:20163905:C:T	rs35135293	C	T	T	Sox3.mouse_HMG_3	13	1	+	4.630988596902332	-1.9762720135596874	TTTGAATTTCAGACAAA
chr2	20166721	20166722	chr2:20166722:G:A	rs62109687	G	A	G	Sox3.mouse_HMG_3	16	1	+	0.8304926413542026	0.794552184901677	GAAGAAAGAGATTCATG
chr2	20166738	20166739	chr2:20166739:C:T	rs183072614	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr2	20184381	20184382	chr2:20184382:G:A	rs146370393	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	20355456	20355457	chr2:20355457:T:G	rs11898408	T	G	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	20682673	20682674	chr2:20682674:T:C	rs56220106	T	C	T	Sox3.mouse_HMG_3	5	1	-	3.845004175024675	-2.643830747046189	GATTAATGCCAGTGATA
chr2	20682688	20682689	chr2:20682689:A:G	rs13382862	A	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	20728281	20728282	chr2:20728282:T:C	rs10495709	T	C	T	Sox3.mouse_HMG_3	0	1	+	4.129595865059263	2.674725219722398	TCTGGATGATAGTCAAG
chr2	20728290	20728291	chr2:20728291:T:C	rs722705	T	C	C	Sox3.mouse_HMG_3	9	1	+	4.129595865059263	4.121959188067517	TCTGGATGATAGTCAAG
chr2	20796865	20796866	chr2:20796866:A:G	rs144345209	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	20868367	20868368	chr2:20868368:C:A	rs114334352	C	A	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr2	20868373	20868374	chr2:20868374:T:C	rs55782366	T	C	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	21014913	21014914	chr2:21014914:T:G	rs2854725	T	G	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	21146695	21146696	chr2:21146696:T:C	rs312969	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	21657535	21657536	chr2:21657536:T:C	rs7585006	T	C	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	21756205	21756206	chr2:21756206:C:G	rs74680820	C	G	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	22017828	22017829	chr2:22017829:C:T	rs373676147	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr2	22335736	22335737	chr2:22335737:A:G	rs4558612	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	22929439	22929440	chr2:22929440:C:T	rs17664272	C	T	C	Sox3.mouse_HMG_3	3	1	-	1.655928166664698	-4.125636720864534	TGTGAATGGGATTTAAA
chr2	23053717	23053718	chr2:23053718:T:G	rs115611459	T	G	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	23057034	23057035	chr2:23057035:G:C	rs72853367	G	C	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	23278464	23278465	chr2:23278465:G:T	rs1438141	G	T	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	23305399	23305400	chr2:23305400:A:C	rs2723104	A	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	23388169	23388170	chr2:23388170:G:A	rs75654683	G	A	G	Sox3.mouse_HMG_3	8	1	+	3.8871091509130817	3.2639925037352686	AATGAGTGGTGGTCATA
chr2	24012103	24012104	chr2:24012104:T:C	rs2339938	T	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr2	24141924	24141925	chr2:24141925:A:G	rs13423196	A	G	G	Sox3.mouse_HMG_3	4	1	+	4.129415557914983	-2.253401170079083	TATGATTGTTATTCCTT
chr2	24153760	24153761	chr2:24153761:T:C	rs1115856	T	C	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr2	24211475	24211476	chr2:24211476:G:A	rs6746005	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	24237495	24237496	chr2:24237496:T:C	rs1472608076	T	C	T	Sox3.mouse_HMG_3	5	1	-	2.7809937620094063	-3.7078411600614585	GTGGAATGACATACATA
chr2	24817553	24817554	chr2:24817554:G:A	rs10178420	G	A	A	Sox3.mouse_HMG_3	7	1	+	4.676102406063068	-1.8774463085946587	ATTGAATGTCAGTGATC
chr2	25003483	25003484	chr2:25003484:G:C	rs12612890	G	C	G	Sox3.mouse_HMG_3	3	1	+	2.770208825452892	-3.9792819102521593	CTTGAATATTAGTCAGG
chr2	25370964	25370965	chr2:25370965:G:C	rs35800274	G	C	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	25700491	25700492	chr2:25700492:A:T	rs2033174	A	T	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	25700537	25700538	chr2:25700538:G:T	rs11676342	G	T	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	26016611	26016612	chr2:26016612:T:A	rs78167716	T	A	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr2	26253071	26253072	chr2:26253072:C:T	rs34081866	C	T	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	26327420	26327421	chr2:26327421:G:A	rs543147259	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	26369636	26369637	chr2:26369637:G:T	rs116066051	G	T	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	26498372	26498373	chr2:26498373:G:C	rs6761836	G	C	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	26498374	26498375	chr2:26498375:C:T	rs6734116	C	T	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	26556310	26556311	chr2:26556311:C:T	rs73923724	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	26568585	26568586	chr2:26568586:A:C	rs939815	A	C	A	Sox3.mouse_HMG_3	5	1	+	3.542895638663452	-3.0645450258152582	TGTCAATTCCATTCAAC
chr2	26588022	26588023	chr2:26588023:G:A	rs76968928	G	A	G	Sox3.mouse_HMG_3	7	1	+	2.1649050771100526	-4.388643637547675	GCTGAATGCTTGTCAGT
chr2	26588035	26588036	chr2:26588036:A:C	rs72817133	A	C	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	27043168	27043169	chr2:27043169:T:C	rs4665938	T	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	27573658	27573659	chr2:27573659:C:T	rs10165098	C	T	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	27993124	27993125	chr2:27993125:G:A	rs192609532	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr2	28239480	28239481	chr2:28239481:G:A	rs59585444	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr2	28406042	28406043	chr2:28406043:C:T	rs13405815	C	T	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr2	28490638	28490639	chr2:28490639:A:G	rs11682115	A	G	A	Sox3.mouse_HMG_3	14	1	-	2.3036189747570504	2.3036189747570504	CATGGATTCCATTCTTT
chr2	28519298	28519299	chr2:28519299:T:C	rs77667895	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	28618153	28618154	chr2:28618154:G:A	rs1881256	G	A	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	28646366	28646367	chr2:28646367:G:A	rs114021750	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	28754377	28754378	chr2:28754378:T:C	rs4233727	T	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr2	28982791	28982792	chr2:28982792:T:A	rs4665439	T	A	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr2	28990541	28990542	chr2:28990542:C:T	rs7567628	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr2	29074201	29074202	chr2:29074202:C:T	rs35929540	C	T	C	Sox3.mouse_HMG_3	15	1	-	1.9209506305725794	2.779731977429	AAAGAGTGGCATTCAGT
chr2	29245954	29245955	chr2:29245955:A:C	rs113829022	A	C	A	Sox3.mouse_HMG_3	12	1	-	1.2587199800007975	-5.122354866321114	TGTCAATGACACTCATT
chr2	29245965	29245966	chr2:29245966:C:T	rs7599784	C	T	T	Sox3.mouse_HMG_3	1	1	-	1.2587199800007975	4.35884991643809	TGTCAATGACACTCATT
chr2	29269932	29269933	chr2:29269933:G:A	rs568987993	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr2	29315544	29315545	chr2:29315545:G:A	rs4666200	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr2	29507625	29507626	chr2:29507626:T:C	rs4433956	T	C	C	Sox3.mouse_HMG_3	16	1	-	3.7148885208583966	3.7508289773109222	TGTTAATTTTAGTCAAA
chr2	29526580	29526581	chr2:29526581:T:A	chr2:29526581:T:A	T	A	T	Sox3.mouse_HMG_3	6	1	+	2.721818978117269	-4.029232507064202	TATGAATGACTTTGAAA
chr2	29606206	29606207	chr2:29606207:G:T	chr2:29606207:G:T	G	T	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	29618119	29618120	chr2:29618120:C:T	rs61641759	C	T	C	Sox3.mouse_HMG_3	15	1	-	1.4304051126345994	2.28918645949102	AGTGAATGTTGGTCAGC
chr2	29716242	29716243	chr2:29716243:A:C	rs2541200	A	C	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	29899196	29899197	chr2:29899197:G:A	rs1036723293	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	29988124	29988125	chr2:29988125:A:G	rs11691638	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr2	29988164	29988165	chr2:29988165:G:A	rs74962281	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	30380932	30380933	chr2:30380933:C:T	rs6707509	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	30385293	30385294	chr2:30385294:G:A	rs7583194	G	A	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	30412539	30412540	chr2:30412540:C:T	rs915064045	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr2	30420944	30420945	chr2:30420945:T:C	rs829699	T	C	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	30420979	30420980	chr2:30420980:T:G	rs35670804	T	G	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr2	30437399	30437400	chr2:30437400:A:G	rs17009486	A	G	A	Sox3.mouse_HMG_3	6	1	-	4.795688745580524	-1.8122618959602736	TGTGAATGTCAATCAAC
chr2	30455361	30455362	chr2:30455362:A:G	rs829580	A	G	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr2	30472630	30472631	chr2:30472631:T:A	rs829563	T	A	T	Sox3.mouse_HMG_3	0	1	+	5.3447784342005304	4.78841538685394	TTTTAATGACATTCAGA
chr2	30579958	30579959	chr2:30579959:A:G	rs10186917	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	30691514	30691515	chr2:30691515:G:A	rs547773	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	30787009	30787010	chr2:30787010:T:C	rs1915126	T	C	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr2	31018259	31018260	chr2:31018260:C:T	rs4952026	C	T	T	Sox3.mouse_HMG_3	0	1	-	4.269184003910648	3.443900102764305	GATATATGGTAGTCATT
chr2	31018273	31018274	chr2:31018274:G:A	rs7583735	G	A	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	31129921	31129922	chr2:31129922:C:G	rs11676188	C	G	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	31149602	31149603	chr2:31149603:G:A	rs10201005	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	31200576	31200577	chr2:31200577:G:A	rs17011001	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	31200621	31200622	chr2:31200622:G:A	rs143870740	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr2	31222928	31222929	chr2:31222929:A:G	rs13386968	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	31239506	31239507	chr2:31239507:C:A	rs3769631	C	A	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	31239507	31239508	chr2:31239508:A:G	rs13428625	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	31271118	31271119	chr2:31271119:G:T	rs7606498	G	T	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	31322416	31322417	chr2:31322417:T:C	rs190837829	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	31897516	31897517	chr2:31897517:A:G	rs34973007	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.7548353118863997	-3.8531153296543974	GATGGATTACATTTATC
chr2	31981437	31981438	chr2:31981438:T:C	rs111476083	T	C	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr2	32164873	32164874	chr2:32164874:G:C	rs138035396	G	C	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	32284729	32284730	chr2:32284730:C:T	rs61459955	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	32808989	32808990	chr2:32808990:A:C	rs3769567	A	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr2	32871975	32871976	chr2:32871976:C:G	rs6756203	C	G	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	32882943	32882944	chr2:32882944:C:A	rs4952314	C	A	A	Sox3.mouse_HMG_3	3	1	-	3.215551244343862	-3.6909432401708546	CCTGGATTACATTCAAA
chr2	33123643	33123644	chr2:33123644:C:G	rs218198	C	G	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr2	33137575	33137576	chr2:33137576:T:G	rs6705263	T	G	T	Sox3.mouse_HMG_3	14	1	-	1.2707556531656479	-5.1111905132612625	AGAGAATGGCACTCAAG
chr2	33360925	33360926	chr2:33360926:A:T	rs75067553	A	T	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr2	33363742	33363743	chr2:33363743:C:T	chr2:33363743:C:T	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	33426967	33426968	chr2:33426968:G:A	rs189137839	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr2	33488079	33488080	chr2:33488080:A:C	rs6736350	A	C	A	Sox3.mouse_HMG_3	11	1	-	1.6612871598572552	0.22685105956144902	CATGAATTGTGTTAATC
chr2	33506172	33506173	chr2:33506173:A:G	rs17013170	A	G	A	Sox3.mouse_HMG_3	4	1	+	6.854358763495926	0.4715420355018599	AGTGAACGTTATTCATT
chr2	33522800	33522801	chr2:33522801:C:T	rs72785945	C	T	c	Sox3.mouse_HMG_3	9	1	+	4.208902164469157	4.216538841460904	AATGAATTACATTATTG
chr2	33563964	33563965	chr2:33563965:A:G	rs10514775	A	G	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	33764784	33764785	chr2:33764785:G:A	rs2030544	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	33764803	33764804	chr2:33764804:G:A	chr2:33764804:G:A	G	A	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	33764803	33764804	chr2:33764804:G:C	rs4597504	G	C	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	33822029	33822030	chr2:33822030:A:G	rs77075221	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr2	33848689	33848690	chr2:33848690:G:T	rs993002396	G	T	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	33953686	33953687	chr2:33953687:T:C	rs7568077	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr2	34229935	34229936	chr2:34229936:G:C	rs2193806	G	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	34287163	34287164	chr2:34287164:G:T	rs114692492	G	T	G	Sox3.mouse_HMG_3	3	1	+	4.545259822453297	-2.361234662061418	TATGAATGCTTATCATT
chr2	34681234	34681235	chr2:34681235:G:A	rs17015498	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	34826740	34826741	chr2:34826741:C:T	rs13001831	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr2	34915840	34915841	chr2:34915841:C:G	rs113252990	C	G	C	Sox3.mouse_HMG_3	3	1	-	4.313281910100587	-2.4362088256044627	TATGAATGTGATGCAAG
chr2	35081799	35081800	chr2:35081800:T:C	rs12619691	T	C	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	35505193	35505194	chr2:35505194:T:G	rs10188049	T	G	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr2	35510903	35510904	chr2:35510904:G:A	rs10175485	G	A	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr2	35624617	35624618	chr2:35624618:A:G	rs7562096	A	G	A	Sox3.mouse_HMG_3	13	1	-	7.011094043324823	13.618354653786845	ACTGAATGATATTTATA
chr2	35822821	35822822	chr2:35822822:C:T	rs10194358	C	T	C	Sox3.mouse_HMG_3	1	1	-	2.433015946240822	5.533145882678113	TGAGAATGCCATACATT
chr2	35894654	35894655	chr2:35894655:T:C	rs1916835	T	C	T	Sox3.mouse_HMG_3	0	1	+	1.682922189510863	0.22805154417399964	TATGTATTGTAGTCTTC
chr2	36162748	36162749	chr2:36162749:C:T	rs1177518	C	T	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	36257139	36257140	chr2:36257140:G:T	rs34467497	G	T	G	Sox3.mouse_HMG_3	13	1	-	1.8484471369566455	-4.534189537020731	TTTGAATGAGTGTCATA
chr2	36380037	36380038	chr2:36380038:T:A	rs140407707	T	A	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	36380042	36380043	chr2:36380043:T:C	rs3755221	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	36427628	36427629	chr2:36427629:C:T	rs3770899	C	T	C	Sox3.mouse_HMG_3	15	1	-	0.44223046409585964	1.3010118109522801	GATGAAGTCCAGCCAGA
chr2	36433332	36433333	chr2:36433333:G:C	rs1477048	G	C	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	36569861	36569862	chr2:36569862:C:A	rs848632	C	A	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr2	36670991	36670992	chr2:36670992:G:A	rs970527492	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr2	36672175	36672176	chr2:36672176:T:G	rs2110879	T	G	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	36701711	36701712	chr2:36701712:T:C	rs4670158	T	C	C	Sox3.mouse_HMG_3	12	1	+	1.0907509417087855	-5.10210262569198	TGTGAATTCCCTTCACC
chr2	36701715	36701716	chr2:36701716:C:A	rs74633129	C	A	C	Sox3.mouse_HMG_3	16	1	+	1.0907509417087855	3.1086667409335607	TGTGAATTCCCTTCACC
chr2	36753993	36753994	chr2:36753994:G:A	chr2:36753994:G:A	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	36953063	36953064	chr2:36953064:C:A	rs3770775	C	A	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr2	37190354	37190355	chr2:37190355:A:G	rs76638424	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr2	37307767	37307768	chr2:37307768:G:A	rs1477055	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	37349028	37349029	chr2:37349029:A:G	rs1051537168	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	37366099	37366100	chr2:37366100:T:C	rs11903018	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	37376104	37376105	chr2:37376105:A:G	rs7570974	A	G	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	37377625	37377626	chr2:37377626:G:A	rs4233922	G	A	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr2	37378042	37378043	chr2:37378043:T:C	rs116192721	T	C	T	Sox3.mouse_HMG_3	9	1	+	7.289035236910812	7.281398559919066	GGTGAATGTTTGTCATG
chr2	37388163	37388164	chr2:37388164:A:T	rs73924632	A	T	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr2	37753715	37753716	chr2:37753716:G:C	rs679092	G	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr2	37803310	37803311	chr2:37803311:T:C	rs868443	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	37856272	37856273	chr2:37856273:A:G	rs934209	A	G	A	Sox3.mouse_HMG_3	6	1	-	5.5422806702786245	-1.0656699712621724	AATAAATGTCATTCTTA
chr2	37872044	37872045	chr2:37872045:T:C	rs569597076	T	C	T	Sox3.mouse_HMG_3	5	1	-	1.6726663637650612	-4.8161685583058045	GACTAATTATAGTCATT
chr2	38175428	38175429	chr2:38175429:T:A	rs2432674	T	A	T	Sox3.mouse_HMG_3	7	1	+	4.071185059199418	-1.6323307132282396	AATGAAATGGAGTCATG
chr2	38243619	38243620	chr2:38243620:T:G	rs3845789	T	G	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	38347751	38347752	chr2:38347752:T:C	rs72902192	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	38381976	38381977	chr2:38381977:T:C	rs942441469	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	38486025	38486026	chr2:38486026:G:T	rs74687803	G	T	G	Sox3.mouse_HMG_3	15	1	-	4.573592053534106	7.0241760010123535	CATGAAATACATTCACA
chr2	38591374	38591375	chr2:38591375:G:A	rs901776058	G	A	g	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr2	38651148	38651149	chr2:38651149:T:C	rs13421362	T	C	c	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr2	38673267	38673268	chr2:38673268:C:G	rs58902700	C	G	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	38729804	38729805	chr2:38729805:A:G	rs2272445	A	G	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr2	39104951	39104952	chr2:39104952:A:C	rs2168043	A	C	A	Sox3.mouse_HMG_3	7	1	-	4.418149054200862	5.2681819964309335	CATTAATTACATTCACA
chr2	39129019	39129020	chr2:39129020:C:T	chr2:39129020:C:T	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr2	39302734	39302735	chr2:39302735:A:G	rs10865150	A	G	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	39506483	39506484	chr2:39506484:G:A	rs17466784	G	A	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	39568802	39568803	chr2:39568803:T:C	rs17023982	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	39568812	39568813	chr2:39568813:C:T	rs116312900	C	T	C	Sox3.mouse_HMG_3	8	1	-	5.34203486142726	4.718918214249447	GATGAATGGCAGAAATG
chr2	39568828	39568829	chr2:39568829:C:A	rs13428186	C	A	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	39647350	39647351	chr2:39647351:A:G	rs2215956	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	39664719	39664720	chr2:39664720:T:C	rs79845277	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	39728229	39728230	chr2:39728230:T:C	rs112712020	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr2	39910052	39910053	chr2:39910053:T:C	rs80303798	T	C	T	Sox3.mouse_HMG_3	0	1	+	4.462869629302297	3.007998983965432	TATGAATTTTAGTCCGC
chr2	40006654	40006655	chr2:40006655:A:G	rs7564200	A	G	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr2	40072892	40072893	chr2:40072893:C:T	rs73924752	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	40206279	40206280	chr2:40206280:T:G	rs436245	T	G	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	40224583	40224584	chr2:40224584:A:C	rs384994	A	C	A	Sox3.mouse_HMG_3	6	1	-	2.910277296930352	-3.8407741882511175	TATGTATTTTTTTCATT
chr2	40228145	40228146	chr2:40228146:A:G	rs140467253	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	40228599	40228600	chr2:40228600:C:A	rs367596	C	A	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr2	40278545	40278546	chr2:40278546:G:A	rs35287703	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr2	40281078	40281079	chr2:40281079:T:G	rs115265575	T	G	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	40375291	40375292	chr2:40375292:T:C	rs12478677	T	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr2	40375307	40375308	chr2:40375308:G:T	rs12474472	G	T	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	40376564	40376565	chr2:40376565:G:A	rs111282761	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr2	40405206	40405207	chr2:40405207:A:G	rs10490043	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr2	40458560	40458561	chr2:40458561:T:G	rs62149443	T	G	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	40474100	40474101	chr2:40474101:C:T	rs78461463	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	40513200	40513201	chr2:40513201:A:G	rs71441108	A	G	A	Sox3.mouse_HMG_3	9	1	-	2.3770320642517087	2.3693953872599627	TTAGTATTCTATTCATA
chr2	40513212	40513213	chr2:40513213:T:G	rs67014132	T	G	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	40547005	40547006	chr2:40547006:A:G	rs114789597	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr2	40553561	40553562	chr2:40553562:A:G	rs72800323	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr2	40579197	40579198	chr2:40579198:A:G	rs4952421	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	40797381	40797382	chr2:40797382:T:C	rs11680340	T	C	t	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	40841957	40841958	chr2:40841958:T:C	rs7597016	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr2	41112218	41112219	chr2:41112219:T:C	rs13017324	T	C	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	41452469	41452470	chr2:41452470:C:T	rs141911718	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	41719928	41719929	chr2:41719929:A:G	rs11896329	A	G	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	41719977	41719978	chr2:41719978:A:C	rs11896334	A	C	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	41860160	41860161	chr2:41860161:G:A	rs142887130	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	41907493	41907494	chr2:41907494:G:C	rs2374343	G	C	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr2	41928662	41928663	chr2:41928663:A:G	rs114479677	A	G	A	Sox3.mouse_HMG_3	1	1	-	4.093825443957112	2.8870427382903134	ATTGAAATACATTCAGA
chr2	41928682	41928683	chr2:41928683:A:C	rs17772955	A	C	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	41988031	41988032	chr2:41988032:G:C	rs34416872	G	C	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	42006668	42006669	chr2:42006669:C:T	rs34818443	C	T	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	42010203	42010204	chr2:42010204:T:C	rs13030802	T	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	42411037	42411038	chr2:42411038:A:T	rs78079912	A	T	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr2	42579597	42579598	chr2:42579598:A:G	rs10187433	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr2	42806790	42806791	chr2:42806791:G:T	rs72801659	G	T	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	42947065	42947066	chr2:42947066:A:C	rs768127365	A	C	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr2	43054017	43054018	chr2:43054018:C:A	rs7601024	C	A	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	43081865	43081866	chr2:43081866:G:A	rs774476863	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr2	43110645	43110646	chr2:43110646:C:T	rs75350061	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr2	43137186	43137187	chr2:43137187:C:T	rs113036358	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr2	43137187	43137188	chr2:43137188:G:A	rs1218276334	G	A	G	Sox3.mouse_HMG_3	0	1	+	0.4471739395429417	-0.3781099616034018	GATGCATGTCATCCAGC
chr2	43137206	43137207	chr2:43137207:C:T	rs916193454	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	43292837	43292838	chr2:43292838:C:T	rs35720761	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr2	43392215	43392216	chr2:43392216:T:C	rs10168732	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	43408003	43408004	chr2:43408004:G:A	rs6544656	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr2	43436624	43436625	chr2:43436625:T:C	rs80261344	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	43436708	43436709	chr2:43436709:C:T	rs78108161	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	43440325	43440326	chr2:43440326:T:C	rs28700209	T	C	T	Sox3.mouse_HMG_3	5	1	-	3.2066151001692713	-3.2822198219015926	AGTAAATTACAGTCAAT
chr2	43553802	43553803	chr2:43553803:T:C	rs13000971	T	C	T	Sox3.mouse_HMG_3	9	1	+	5.2975506775203485	5.2899140005286025	TTTAAATTATAGTCATC
chr2	43901772	43901773	chr2:43901773:C:T	rs4953032	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	43950561	43950562	chr2:43950562:G:C	rs58811869	G	C	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr2	44181780	44181781	chr2:44181781:C:G	rs10199294	C	G	c	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	44351338	44351339	chr2:44351339:T:C	rs148747207	T	C	T	Sox3.mouse_HMG_3	15	1	-	4.357999356391594	3.4992180095351735	TATAAATGGTATTTAAG
chr2	44351339	44351340	chr2:44351340:T:C	rs114976582	T	C	T	Sox3.mouse_HMG_3	14	1	-	4.357999356391594	-2.0239468100353166	TATAAATGGTATTTAAG
chr2	44683273	44683274	chr2:44683274:T:C	rs343974	T	C	C	Sox3.mouse_HMG_3	8	1	-	3.439243420108627	4.0623600672864395	AATGAATCATACTCATC
chr2	44722076	44722077	chr2:44722077:G:A	rs559626606	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr2	44977693	44977694	chr2:44977694:T:G	rs532628	T	G	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	45042682	45042683	chr2:45042683:A:G	rs6544780	A	G	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr2	45177909	45177910	chr2:45177910:C:T	rs13418468	C	T	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	45177926	45177927	chr2:45177927:G:T	rs3914643	G	T	T	Sox3.mouse_HMG_3	10	1	+	4.229036751887664	4.0859359082469915	GATGAATGGCGTGCATC
chr2	45233383	45233384	chr2:45233384:C:T	rs62130784	C	T	C	Sox3.mouse_HMG_3	6	1	-	2.582295798322856	2.582295798322856	GTTAAAGGGCATTCATT
chr2	45284131	45284132	chr2:45284132:T:G	rs116216392	T	G	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr2	45350103	45350104	chr2:45350104:A:G	rs11689571	A	G	A	Sox3.mouse_HMG_3	10	1	+	6.815681913598891	0.2077312720580945	TGTGACTTCCATTCATT
chr2	45383373	45383374	chr2:45383374:C:T	rs12994547	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr2	45470988	45470989	chr2:45470989:T:C	rs17322167	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	45605350	45605351	chr2:45605351:A:C	rs75787259	A	C	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr2	45743222	45743223	chr2:45743223:G:A	rs1914311	G	A	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	45804402	45804403	chr2:45804403:C:A	rs62127182	C	A	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	45945971	45945972	chr2:45945972:A:T	rs73926118	A	T	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	45982891	45982892	chr2:45982892:C:T	rs61764810	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr2	46046147	46046148	chr2:46046148:T:A	rs78631698	T	A	T	Sox3.mouse_HMG_3	5	1	-	2.069261880022134	-4.538178784456576	AATGAATCCCAGCCATC
chr2	46067264	46067265	chr2:46067265:G:T	rs146584250	G	T	G	Sox3.mouse_HMG_3	10	1	+	3.647562943035787	3.5044620993951137	AATGAATGACGTGCATT
chr2	46067671	46067672	chr2:46067672:T:C	rs12712962	T	C	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	46067709	46067710	chr2:46067710:C:A	rs6730511	C	A	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	46087590	46087591	chr2:46087591:C:T	rs1124788	C	T	C	Sox3.mouse_HMG_3	3	1	-	1.086860419009606	-4.694704468519625	CATGAATGGCAGGCTAG
chr2	46164867	46164868	chr2:46164868:A:G	rs374763638	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr2	46198268	46198269	chr2:46198269:A:C	chr2:46198269:A:C	A	C	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	46227788	46227789	chr2:46227789:G:A	rs11687784	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	46284799	46284800	chr2:46284800:C:T	rs1000531	C	T	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	46284836	46284837	chr2:46284837:T:C	rs1000532	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	46376097	46376098	chr2:46376098:G:C	rs56037329	G	C	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr2	46395176	46395177	chr2:46395177:T:C	rs76345224	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	46423081	46423082	chr2:46423082:C:T	rs4953369	C	T	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	46423104	46423105	chr2:46423105:T:C	rs4953370	T	C	T	Sox3.mouse_HMG_3	15	1	+	0.9523304896733394	-3.762062922041729	AGTGTTTGGTATTCATT
chr2	46469215	46469216	chr2:46469216:A:T	rs4952827	A	T	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr2	46469231	46469232	chr2:46469232:T:C	rs78538401	T	C	T	Sox3.mouse_HMG_3	6	1	+	3.8934742631119663	-2.7144763784288335	CCTGCATTCCAGTCATG
chr2	46937828	46937829	chr2:46937829:G:A	rs10202814	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	46967899	46967900	chr2:46967900:G:A	chr2:46967900:G:A	G	A	G	Sox3.mouse_HMG_3	8	1	+	3.420465358957304	2.797348711779491	AATGAATTGCATTTTTT
chr2	46972031	46972032	chr2:46972032:G:A	rs72806538	G	A	G	Sox3.mouse_HMG_3	7	1	+	2.4495120190230493	-4.1040366956346785	ATTTAATGGCACTCATA
chr2	46972142	46972143	chr2:46972143:G:A	rs78406421	G	A	G	Sox3.mouse_HMG_3	13	1	-	0.8631613843241788	-5.744099226137841	AATGAAATCCATGCAGA
chr2	46972162	46972163	chr2:46972163:G:A	rs7560371	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	46989641	46989642	chr2:46989642:A:G	rs1529774	A	G	G	Sox3.mouse_HMG_3	8	1	-	5.7567944230799055	6.018914167996011	ATTGAATGTCCTTCAAG
chr2	47046440	47046441	chr2:47046441:C:T	rs201704252	C	T	C	Sox3.mouse_HMG_3	10	1	+	0.31053653523721747	0.31053653523721747	GGTGAGTGGCCGTCATT
chr2	47076955	47076956	chr2:47076956:A:G	rs17036229	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr2	47152122	47152123	chr2:47152123:T:C	rs6760339	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.4650129036765605	-5.140866214554368	TATGAATTTCAGACCTC
chr2	47288123	47288124	chr2:47288124:G:T	rs13412502	G	T	T	Sox3.mouse_HMG_3	2	1	-	1.0403018023246327	1.9188522062159403	CACGAATGGTCTTCAGA
chr2	47302046	47302047	chr2:47302047:G:A	rs57409646	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	47336894	47336895	chr2:47336895:G:A	rs4422207	G	A	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr2	47678250	47678251	chr2:47678251:C:A	rs17036817	C	A	C	Sox3.mouse_HMG_3	11	1	-	2.658301668960066	4.092737769255873	AATGAATTTCAGGCCTA
chr2	47695454	47695455	chr2:47695455:G:A	rs114986048	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr2	47698280	47698281	chr2:47698281:T:C	rs374757578	T	C	T	Sox3.mouse_HMG_3	4	1	-	2.2474870513320484	-4.1353296766620184	CATGAAAGTTAGTCCTA
chr2	47698288	47698289	chr2:47698289:G:T	rs369837612	G	T	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr2	47716308	47716309	chr2:47716309:G:A	rs61637835	G	A	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	48165757	48165758	chr2:48165758:A:G	chr2:48165758:A:G	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	48270534	48270535	chr2:48270535:G:A	rs528516276	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr2	48292217	48292218	chr2:48292218:A:G	rs11687708	A	G	A	Sox3.mouse_HMG_3	11	1	-	4.720104692263828	-1.3645061338381168	TATGACTTCCATTAATG
chr2	48417247	48417248	chr2:48417248:A:T	rs76683524	A	T	A	Sox3.mouse_HMG_3	9	1	-	1.4881349598504012	-4.573720341649664	TATTTATTGTATTCAGA
chr2	48461904	48461905	chr2:48461905:T:G	rs10865229	T	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	48575217	48575218	chr2:48575218:A:G	rs11676150	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	48651306	48651307	chr2:48651307:T:A	rs11679449	T	A	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	49472608	49472609	chr2:49472609:C:T	rs13005255	C	T	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	49472623	49472624	chr2:49472624:C:G	rs13005268	C	G	G	Sox3.mouse_HMG_3	9	1	+	0.5813247878503958	-4.75860421952417	GTGGAATGACACTCAAG
chr2	49656427	49656428	chr2:49656428:T:G	rs10495980	T	G	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr2	49865622	49865623	chr2:49865623:T:C	rs10495985	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	49979593	49979594	chr2:49979594:T:C	rs2882594	T	C	C	Sox3.mouse_HMG_3	10	1	-	2.384113367262551	-4.223837274278247	TTTGAAAGTCATCCATG
chr2	50161336	50161337	chr2:50161337:G:A	rs2688890	G	A	G	Sox3.mouse_HMG_3	14	1	-	4.667550168563029	4.667550168563029	TTTGAATTCTAGTCCAG
chr2	50347346	50347347	chr2:50347347:A:G	rs13422484	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	50347369	50347370	chr2:50347370:A:C	rs74605123	A	C	C	Sox3.mouse_HMG_3	8	1	-	0.8985818319249979	1.6034842455190355	GGTGGATGTCTGTCATG
chr2	50611456	50611457	chr2:50611457:T:C	rs77169385	T	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr2	50697219	50697220	chr2:50697220:A:G	rs17560229	A	G	A	Sox3.mouse_HMG_3	11	1	-	3.505083363352951	-2.5795274627489944	AATGAAGTTTATTTATA
chr2	50749346	50749347	chr2:50749347:T:G	rs3901491	T	G	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	50782699	50782700	chr2:50782700:G:C	rs34591327	G	C	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	50855764	50855765	chr2:50855765:T:C	rs6751172	T	C	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	51004721	51004722	chr2:51004722:C:A	rs34684671	C	A	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr2	51145621	51145622	chr2:51145622:G:A	rs72830225	G	A	G	Sox3.mouse_HMG_3	16	1	-	3.333165502668565	4.200092242140844	ACTGAATGTTTGTCATC
chr2	51561365	51561366	chr2:51561366:G:C	rs2698021	G	C	c	Sox3.mouse_HMG_3	16	1	-	1.360755720353049	3.4146119760303497	GAGGAATTCCAGGCATC
chr2	52000685	52000686	chr2:52000686:T:C	rs11125398	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr2	52113615	52113616	chr2:52113616:A:G	rs73930681	A	G	A	Sox3.mouse_HMG_3	1	1	-	5.962314133254428	4.75553142758763	ATTGAATTCCTGTCATA
chr2	52479218	52479219	chr2:52479219:A:C	chr2:52479219:A:C	A	C	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	52479255	52479256	chr2:52479256:T:C	rs56391076	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.587750191475762	-0.5123797449615312	AATAAATGTCTGTCATT
chr2	52522320	52522321	chr2:52522321:T:C	rs9309231	T	C	C	Sox3.mouse_HMG_3	9	1	+	2.729052182987246	2.7214155059955	TATAAATTCTACTCAGG
chr2	52678525	52678526	chr2:52678526:G:A	rs55665316	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	52704993	52704994	chr2:52704994:T:C	rs6738153	T	C	T	Sox3.mouse_HMG_3	11	1	+	3.01955201003414	-3.065058816067805	AGAGAATGGTATTGATG
chr2	52959718	52959719	chr2:52959719:C:T	rs73931757	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	53021191	53021192	chr2:53021192:T:G	rs2121303	T	G	T	Sox3.mouse_HMG_3	12	1	+	2.5308431395175353	-3.850231706804375	TATGAATTGCCTTGAAG
chr2	53131066	53131067	chr2:53131067:G:A	rs13414722	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	53243695	53243696	chr2:53243696:T:C	rs1364681	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	53313555	53313556	chr2:53313556:A:C	rs11895925	A	C	A	Sox3.mouse_HMG_3	7	1	-	9.967918539029386	10.817951481259458	TATGAATTATATTAATT
chr2	53366718	53366719	chr2:53366719:T:C	rs10205628	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	53456156	53456157	chr2:53456157:G:A	rs111515694	G	A	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr2	53456171	53456172	chr2:53456172:C:G	rs35090707	C	G	G	Sox3.mouse_HMG_3	7	1	-	1.5261727387246675	-4.727271383482721	AATGATTGCCAGTCTTC
chr2	53525704	53525705	chr2:53525705:A:G	rs12463516	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr2	53575738	53575739	chr2:53575739:T:C	rs150988747	T	C	T	Sox3.mouse_HMG_3	9	1	+	1.3749958463025431	1.3673591693107972	TCTGAAGGATACTCATG
chr2	53575756	53575757	chr2:53575757:C:T	rs72791571	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr2	53670113	53670114	chr2:53670114:A:G	rs80029529	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	53767355	53767356	chr2:53767356:A:G	rs3755114	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr2	53949595	53949596	chr2:53949596:C:A	rs115660490	C	A	C	Sox3.mouse_HMG_3	8	1	+	2.18341097957192	2.0030770010720387	AAGGAAATCCAGTCATA
chr2	54107059	54107060	chr2:54107060:T:C	rs186834348	T	C	T	Sox3.mouse_HMG_3	13	1	+	1.3426150403667838	7.949875650828805	AATGAAAGACATTTAGG
chr2	54503238	54503239	chr2:54503239:A:G	rs74748035	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr2	54528091	54528092	chr2:54528092:A:G	rs3796022	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	54540016	54540017	chr2:54540017:A:G	rs74505378	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr2	54562405	54562406	chr2:54562406:T:C	rs12713263	T	C	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	54569323	54569324	chr2:54569324:T:G	rs34077590	T	G	T	Sox3.mouse_HMG_3	15	1	+	2.4708877914774416	-0.6517030196158	GTTGAAGGTTATTAATG
chr2	54586408	54586409	chr2:54586409:A:G	rs10210502	A	G	A	Sox3.mouse_HMG_3	6	1	-	2.150415089988564	-4.457535551552232	GAGGAATTATATTTAAA
chr2	54634865	54634866	chr2:54634866:G:A	rs2941580	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr2	54635558	54635559	chr2:54635559:A:G	rs113152566	A	G	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	54642768	54642769	chr2:54642769:T:C	rs79086971	T	C	T	Sox3.mouse_HMG_3	6	1	+	3.558920830741457	-3.0490298107993423	AATGAATGTTAGATATA
chr2	54900077	54900078	chr2:54900078:G:T	rs112243857	G	T	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr2	54905012	54905013	chr2:54905013:T:C	rs534623475	T	C	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr2	54924302	54924303	chr2:54924303:G:A	rs4671233	G	A	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	55421201	55421202	chr2:55421202:A:G	rs3762512	A	G	A	Sox3.mouse_HMG_3	14	1	+	6.133893666527275	-0.24805249989963563	TATAAATGTCATTAATG
chr2	55527567	55527568	chr2:55527568:C:G	rs4672053	C	G	C	Sox3.mouse_HMG_3	16	1	-	0.615454139304566	-1.4384021163727347	TTTGAAATGCAGTCTTG
chr2	55616501	55616502	chr2:55616502:C:T	rs782591	C	T	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	55616508	55616509	chr2:55616509:G:C	rs76362389	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	55888698	55888699	chr2:55888699:T:C	rs11125609	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	55914962	55914963	chr2:55914963:G:A	rs4380284	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr2	56012859	56012860	chr2:56012860:C:T	rs6741589	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr2	56128179	56128180	chr2:56128180:T:C	rs2021796	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr2	56231209	56231210	chr2:56231210:T:C	rs4672099	T	C	T	Sox3.mouse_HMG_3	2	1	+	4.495418729701664	-2.1104603885292663	TATTAATTGCTTTCATG
chr2	56580465	56580466	chr2:56580466:A:G	rs59956872	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr2	57164009	57164010	chr2:57164010:T:G	rs17798206	T	G	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	57178298	57178299	chr2:57178299:A:G	rs1991124	A	G	A	Sox3.mouse_HMG_3	14	1	+	3.442237302036527	-2.9397088643903837	TCTAAATTCCATTCAGT
chr2	57180673	57180674	chr2:57180674:C:T	rs13028231	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	57692701	57692702	chr2:57692702:G:C	rs137873961	G	C	G	Sox3.mouse_HMG_3	0	1	+	0.9802712612738652	-0.7435202378627533	GCTGAATAGTATTCCTT
chr2	58006994	58006995	chr2:58006995:C:G	rs72808498	C	G	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	58107103	58107104	chr2:58107104:G:A	rs13033987	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	58533504	58533505	chr2:58533505:T:G	rs10490086	T	G	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	58534463	58534464	chr2:58534464:A:G	rs764975	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr2	59566359	59566360	chr2:59566360:G:A	rs2674078	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr2	59909391	59909392	chr2:59909392:T:C	rs73932454	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	59997193	59997194	chr2:59997194:A:T	rs6731782	A	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	60260766	60260767	chr2:60260767:G:T	rs17017706	G	T	G	Sox3.mouse_HMG_3	6	1	+	1.0793836714071217	7.830435156588593	CAGGAAGGTCATTCAAG
chr2	60260771	60260772	chr2:60260772:T:C	rs184263810	T	C	T	Sox3.mouse_HMG_3	11	1	+	1.0793836714071217	-5.005227154694824	CAGGAAGGTCATTCAAG
chr2	60320431	60320432	chr2:60320432:A:G	rs11125833	A	G	G	Sox3.mouse_HMG_3	11	1	-	6.709097440370818	0.6244866142688736	TCTGAACTACATTCATA
chr2	60479167	60479168	chr2:60479168:A:G	rs1394405823	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr2	60543318	60543319	chr2:60543319:C:T	rs6739994	C	T	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	60603901	60603902	chr2:60603902:T:C	rs34111002	T	C	T	Sox3.mouse_HMG_3	2	1	+	8.356547919506303	1.7506688012753702	AATGAAATCTATTCATC
chr2	60603928	60603929	chr2:60603929:G:A	rs13406977	G	A	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	60697462	60697463	chr2:60697463:G:A	rs61699304	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	60738611	60738612	chr2:60738612:C:A	rs10184932	C	A	g	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr2	61365601	61365602	chr2:61365602:A:G	rs72813566	A	G	A	Sox3.mouse_HMG_3	6	1	-	2.9035537178612474	-3.704396923679549	AATTAATTGTATTTATT
chr2	61620942	61620943	chr2:61620943:G:A	rs12713442	G	A	A	Sox3.mouse_HMG_3	4	1	-	1.6222301472096146	1.7653309908502879	GTTGCACTCTATTCATA
chr2	61898943	61898944	chr2:61898944:G:A	rs139365079	G	A	g	Sox3.mouse_HMG_3	9	1	-	1.290731169680911	1.298367846672657	TTAGAATGGCTTTCAAG
chr2	62934483	62934484	chr2:62934484:A:T	rs113324590	A	T	A	Sox3.mouse_HMG_3	16	1	-	3.3980034685960385	4.548992528348535	AATTAATTGTATACATT
chr2	63736548	63736549	chr2:63736549:A:G	rs558011872	A	G	A	Sox3.mouse_HMG_3	1	1	-	5.508992257509255	4.302209551842455	ATTGAATTCTATTAAAA
chr2	64031143	64031144	chr2:64031144:A:C	rs73935051	A	C	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr2	64321898	64321899	chr2:64321899:T:C	rs930019	T	C	C	Sox3.mouse_HMG_3	12	1	+	0.6326030630022681	-5.560250504398498	TGGGAATGTCAGTCGTG
chr2	64348953	64348954	chr2:64348954:C:T	rs115764358	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr2	64348954	64348955	chr2:64348955:G:A	rs77358716	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	64402854	64402855	chr2:64402855:T:G	rs59647975	T	G	T	Sox3.mouse_HMG_3	16	1	-	2.091306841346202	0.07339104212142655	AATGAATGTTTTTTAAA
chr2	64607486	64607487	chr2:64607487:A:G	rs1360335457	A	G	A	Sox3.mouse_HMG_3	14	1	+	5.08674593460873	-1.2952002318181817	AATAAATTATATACATG
chr2	64730378	64730379	chr2:64730379:T:C	rs10185499	T	C	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr2	64730548	64730549	chr2:64730549:C:T	rs17029275	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	64818857	64818858	chr2:64818858:A:G	rs7608749	A	G	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr2	64864336	64864337	chr2:64864337:A:G	rs77593318	A	G	A	Sox3.mouse_HMG_3	14	1	+	1.9904225165219236	-4.391523649904988	GTTGAAAGGTATGCATT
chr2	64946650	64946651	chr2:64946651:G:T	rs138024569	G	T	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	64987605	64987606	chr2:64987606:T:C	rs12615528	T	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	65226786	65226787	chr2:65226787:T:C	rs34813149	T	C	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	65265193	65265194	chr2:65265194:A:G	rs80078324	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	65265205	65265206	chr2:65265206:A:G	rs6752683	A	G	A	Sox3.mouse_HMG_3	6	1	-	4.169026912613706	-2.438923728927091	AAAGAATGTTAGTAATA
chr2	65305752	65305753	chr2:65305753:G:A	rs7592965	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr2	65474499	65474500	chr2:65474500:C:T	rs702876	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	65491781	65491782	chr2:65491782:C:T	rs934735	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	65547327	65547328	chr2:65547328:G:C	rs3843340	G	C	G	Sox3.mouse_HMG_3	3	1	+	2.754175294350886	-3.9953154413541645	TATGGATGGTTTTCAGG
chr2	65567458	65567459	chr2:65567459:G:C	rs1641481	G	C	G	Sox3.mouse_HMG_3	16	1	+	2.21513350149546	0.16127724581815905	GTTGACTGTGAGTCATG
chr2	65686952	65686953	chr2:65686953:T:A	rs10490612	T	A	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	65719377	65719378	chr2:65719378:A:G	rs10490617	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr2	65783166	65783167	chr2:65783167:A:G	rs13405499	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	65867521	65867522	chr2:65867522:G:A	rs976393	G	A	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr2	65868401	65868402	chr2:65868402:T:G	rs993468	T	G	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr2	65949930	65949931	chr2:65949931:T:G	rs2052669	T	G	G	Sox3.mouse_HMG_3	15	1	+	4.409895080087168	1.287304268993926	AGTGAATGTTTGTCATC
chr2	66111376	66111377	chr2:66111377:A:T	rs11899217	A	T	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	66305999	66306000	chr2:66306000:C:T	chr2:66306000:C:T	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	66430669	66430670	chr2:66430670:C:T	rs10200708	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	66459463	66459464	chr2:66459464:T:C	rs6727704	T	C	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	66574914	66574915	chr2:66574915:G:A	rs565594555	G	A	G	Sox3.mouse_HMG_3	13	1	-	2.2288829625108324	-4.378377647951187	GATGAATTGCAGACCAG
chr2	66753264	66753265	chr2:66753265:C:T	rs76091893	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	66889254	66889255	chr2:66889255:T:A	rs77060566	T	A	t	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	67072555	67072556	chr2:67072556:T:C	rs112325268	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	67187614	67187615	chr2:67187615:G:T	rs12471935	G	T	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	67261999	67262000	chr2:67262000:G:A	rs34667048	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	67384267	67384268	chr2:67384268:T:C	rs1170740761	T	C	T	Sox3.mouse_HMG_3	5	1	-	2.2853731942068354	-4.2034617278640285	CATCAATTGCAGCCATA
chr2	67401266	67401267	chr2:67401267:T:A	rs148077105	T	A	T	Sox3.mouse_HMG_3	1	1	+	0.6612357710938919	3.6313125792829863	TTTGAAAGCTTGTCATG
chr2	67579859	67579860	chr2:67579860:C:T	rs10490721	C	T	C	Sox3.mouse_HMG_3	11	1	-	1.6701188504556874	-2.980055875350451	TATAAATCTCAGTCAGA
chr2	67733863	67733864	chr2:67733864:A:C	rs12474188	A	C	C	Sox3.mouse_HMG_3	2	1	-	1.037133425416267	-5.7118465364553375	TGTGTATGCCAGGCATG
chr2	67800082	67800083	chr2:67800083:C:A	rs77973058	C	A	A	Sox3.mouse_HMG_3	11	1	-	1.1741319645679023	2.608568064863709	TTTGAATGCTAGTGCTG
chr2	67851846	67851847	chr2:67851847:A:G	rs966819	A	G	G	Sox3.mouse_HMG_3	15	1	-	2.662627073815883	-2.0517663378991853	TCTAAATGGCATTCCTG
chr2	67852545	67852546	chr2:67852546:A:C	rs6706252	A	C	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	67895096	67895097	chr2:67895097:C:G	rs6546339	C	G	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	68212035	68212036	chr2:68212036:C:A	rs4296409	C	A	A	Sox3.mouse_HMG_3	14	1	-	2.786536755941545	2.786536755941545	CATTAATTACATTCGTG
chr2	68943583	68943584	chr2:68943584:G:C	rs138759399	G	C	g	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr2	68943614	68943615	chr2:68943615:C:G	rs186979887	C	G	C	Sox3.mouse_HMG_3	16	1	+	5.138787553930557	7.1926438096078575	GTTGAATTCCAGTCCTC
chr2	68943621	68943622	chr2:68943622:G:T	chr2:68943622:G:T	G	T	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	68953028	68953029	chr2:68953029:T:A	rs7561266	T	A	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr2	69116016	69116017	chr2:69116017:C:T	rs7564112	C	T	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	69128813	69128814	chr2:69128814:G:A	rs75430990	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	69138665	69138666	chr2:69138666:A:G	rs7561207	A	G	G	Sox3.mouse_HMG_3	8	1	-	2.9586921850496073	3.220811929965713	AAGGAATGTTAGTTATG
chr2	69168246	69168247	chr2:69168247:T:C	rs7582833	T	C	C	Sox3.mouse_HMG_3	14	1	-	1.4907943513363069	-4.891151815090604	GCTGCATGCTATTAATA
chr2	69302872	69302873	chr2:69302873:G:T	rs11689597	G	T	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr2	69388236	69388237	chr2:69388237:G:C	rs543528783	G	C	g	Sox3.mouse_HMG_3	7	1	+	1.4445216838660857	-4.8089224383413045	GCTGACTGCTGTTCATG
chr2	69477808	69477809	chr2:69477809:A:G	rs2312205	A	G	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	69477837	69477838	chr2:69477838:G:T	rs11688141	G	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	69594383	69594384	chr2:69594384:T:C	rs77119032	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	69594435	69594436	chr2:69594436:G:A	rs7569145	G	A	a	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr2	69790259	69790260	chr2:69790260:A:G	rs57830265	A	G	G	Sox3.mouse_HMG_3	2	1	-	4.683299391382831	-1.922579726848098	TATGGATTTCATTCCTG
chr2	69790261	69790262	chr2:69790262:A:T	rs181609114	A	T	A	Sox3.mouse_HMG_3	0	1	-	4.683299391382831	4.126936344036241	TATGGATTTCATTCCTG
chr2	69980554	69980555	chr2:69980555:G:A	rs138705909	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr2	69980601	69980602	chr2:69980602:C:A	rs1986392	C	A	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr2	70131231	70131232	chr2:70131232:G:T	rs72841126	G	T	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	70181536	70181537	chr2:70181537:G:A	rs1311824476	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr2	70431978	70431979	chr2:70431979:G:A	rs62149591	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	70432152	70432153	chr2:70432153:A:G	rs148100377	A	G	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	70461248	70461249	chr2:70461249:C:G	rs67894625	C	G	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	70532358	70532359	chr2:70532359:C:A	rs3771480	C	A	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr2	70782460	70782461	chr2:70782461:G:C	rs6546629	G	C	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	70785601	70785602	chr2:70785602:C:G	rs7566476	C	G	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr2	70931005	70931006	chr2:70931006:T:A	rs116508049	T	A	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	70931044	70931045	chr2:70931045:T:C	rs34467783	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	70982873	70982874	chr2:70982874:C:T	rs75754226	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	71073385	71073386	chr2:71073386:T:C	rs17616553	T	C	.	Sox3.mouse_HMG_3	5	1	-	4.61819072885302	-1.870644193217844	CTTGAATTTTATACAAA
chr2	71176050	71176051	chr2:71176051:G:C	rs370068	G	C	.	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr2	71261813	71261814	chr2:71261814:G:T	rs2609505	G	T	G	Sox3.mouse_HMG_3	0	1	+	1.933643098481206	1.6647222446814516	GGTCAATGGAAGTCATG
chr2	71337015	71337016	chr2:71337016:A:T	rs74678666	A	T	A	Sox3.mouse_HMG_3	9	1	-	1.560968217944883	-4.500887083555183	ATTGACTGTTAGTCAGC
chr2	71893028	71893029	chr2:71893029:A:G	rs17007566	A	G	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	72008557	72008558	chr2:72008558:T:C	rs4405788	T	C	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	72091903	72091904	chr2:72091904:C:T	rs17722207	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	72103581	72103582	chr2:72103582:C:T	rs75006501	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	72129319	72129320	chr2:72129320:G:T	rs707718	G	T	T	Sox3.mouse_HMG_3	0	1	-	2.6749062556210355	3.57341385361131	CATGAATGTTGTGCATT
chr2	72166898	72166899	chr2:72166899:C:T	rs1387	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	72166938	72166939	chr2:72166939:A:G	rs77198765	A	G	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr2	72167763	72167764	chr2:72167764:A:G	rs194242	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	72183041	72183042	chr2:72183042:T:C	rs538843409	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	72583234	72583235	chr2:72583235:C:G	rs6546777	C	G	C	Sox3.mouse_HMG_3	7	1	-	2.8072327206001786	-3.4462114016072105	TAGGAATGCCAGTAATT
chr2	72778690	72778691	chr2:72778691:A:C	rs76366622	A	C	A	Sox3.mouse_HMG_3	7	1	-	1.0949782836462796	1.9450112258763497	CATGATTTGTAGTCCTT
chr2	72826149	72826150	chr2:72826150:A:G	rs76942051	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	72846364	72846365	chr2:72846365:A:C	rs4852896	A	C	A	Sox3.mouse_HMG_3	8	1	-	1.837489892414049	2.542392306008087	TATGAATTTCAGTGTTT
chr2	72846507	72846508	chr2:72846508:C:T	rs78506316	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr2	73069549	73069550	chr2:73069550:G:A	rs141115834	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	73237679	73237680	chr2:73237680:T:C	rs10207625	T	C	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr2	73294037	73294038	chr2:73294038:C:T	rs6718289	C	T	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	73738959	73738960	chr2:73738960:G:A	rs2421676	G	A	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	73896699	73896700	chr2:73896700:C:T	rs831537	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr2	73908029	73908030	chr2:73908030:C:T	rs115169864	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	73922858	73922859	chr2:73922859:A:G	rs10196755	A	G	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	73922873	73922874	chr2:73922874:G:A	rs831523	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	74008388	74008389	chr2:74008389:C:G	rs117147126	C	G	C	Sox3.mouse_HMG_3	13	1	+	1.1028842340067153	-5.504376376455305	TGTGAATTGCATGCCTT
chr2	74008711	74008712	chr2:74008712:G:T	rs6751551	G	T	G	Sox3.mouse_HMG_3	13	1	-	3.47490694280346	-2.9077297311739168	GAAGAAAGTTAGTCATT
chr2	74012387	74012388	chr2:74012388:G:A	rs4270374	G	A	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	74483067	74483068	chr2:74483068:C:T	rs138572405	C	T	C	Sox3.mouse_HMG_3	7	1	-	1.6230280551320655	-4.930520659525661	AATGAAAGGTAGTCTAG
chr2	74850549	74850550	chr2:74850550:A:G	rs3771784	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr2	75130275	75130276	chr2:75130276:C:T	rs10167068	C	T	C	Sox3.mouse_HMG_3	11	1	+	1.6100447502138218	7.694655576315768	AATGAAGTGTACTCAGA
chr2	75354560	75354561	chr2:75354561:A:G	rs59141372	A	G	A	Sox3.mouse_HMG_3	2	1	+	2.200570928065006	1.1789196805330253	GAAGAAAGGCAGTCAGA
chr2	75375547	75375548	chr2:75375548:T:G	rs60460340	T	G	T	Sox3.mouse_HMG_3	2	1	+	5.188028715739585	-1.560951246132018	GATGAATTACATCCCTA
chr2	75456223	75456224	chr2:75456224:C:T	rs12994030	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	75574318	75574319	chr2:75574319:C:G	rs192916729	C	G	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr2	75574354	75574355	chr2:75574355:G:C	rs11888619	G	C	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	75588364	75588365	chr2:75588365:C:T	rs191003543	C	T	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	75752148	75752149	chr2:75752149:C:A	rs1859707	C	A	A	Sox3.mouse_HMG_3	7	1	-	1.1701233501871848	0.3200904079571133	GTTGAGTGTCTTTCATT
chr2	75853721	75853722	chr2:75853722:C:T	rs80244538	C	T	C	Sox3.mouse_HMG_3	8	1	-	1.885968178209516	1.2628515310317028	TGGGAATTGCATTCCTA
chr2	76130688	76130689	chr2:76130689:G:C	rs730148	G	C	G	Sox3.mouse_HMG_3	9	1	-	3.9312919363251426	-1.4086370710494207	AAAGAATTGCCTTCATT
chr2	76598067	76598068	chr2:76598068:C:T	rs1850914	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr2	76669156	76669157	chr2:76669157:T:C	rs11682001	T	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	76920553	76920554	chr2:76920554:T:A	rs13385839	T	A	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	77028304	77028305	chr2:77028305:C:G	rs55800138	C	G	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	77028327	77028328	chr2:77028328:G:A	rs17013625	G	A	G	Sox3.mouse_HMG_3	0	1	-	6.677793912715246	8.132664558052111	CTTGATTTCCATTCATG
chr2	77664860	77664861	chr2:77664861:C:G	rs4619635	C	G	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr2	77889812	77889813	chr2:77889813:C:A	rs7598535	C	A	A	Sox3.mouse_HMG_3	0	1	-	5.740676971208604	5.47175611740885	GATGAGTGCTATTTATG
chr2	78465832	78465833	chr2:78465833:A:G	rs74893438	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	78614651	78614652	chr2:78614652:T:C	rs17040590	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr2	78912162	78912163	chr2:78912163:G:A	rs60283164	G	A	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr2	78977868	78977869	chr2:78977869:G:T	chr2:78977869:G:T	G	T	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	79041086	79041087	chr2:79041087:C:A	rs283843	C	A	C	Sox3.mouse_HMG_3	0	1	-	3.4582334257449023	3.189312571945149	GATTATTGGCATTCAAA
chr2	79515106	79515107	chr2:79515107:A:G	rs72921156	A	G	A	Sox3.mouse_HMG_3	11	1	-	1.4596582591111222	-4.624952566990823	ATGGAATTGCATTCCTA
chr2	80476114	80476115	chr2:80476115:A:T	rs4852566	A	T	A	Sox3.mouse_HMG_3	10	1	+	2.226645514021599	-4.524405971159871	GCTAAATGTCATTCTTG
chr2	80488893	80488894	chr2:80488894:C:T	rs11691381	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	81922611	81922612	chr2:81922612:G:C	rs10171713	G	C	-	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	81943137	81943138	chr2:81943138:G:A	rs2685710	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	82748811	82748812	chr2:82748812:T:C	rs72934138	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr2	82811824	82811825	chr2:82811825:A:C	rs185808058	A	C	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr2	82880084	82880085	chr2:82880085:A:G	rs12470166	A	G	G	Sox3.mouse_HMG_3	12	1	-	3.741234520859777	-2.451619046540989	TAGGAATGCTAGTGATA
chr2	83007308	83007309	chr2:83007309:A:C	rs62146758	A	C	A	Sox3.mouse_HMG_3	14	1	+	2.6004998378473503	-3.7814463285795608	CATCAATTTCATTGATA
chr2	83068825	83068826	chr2:83068826:A:G	rs59555411	A	G	g	Sox3.mouse_HMG_3	9	1	-	1.259196621614189	1.251559944622443	TGTGACTTCTCTTCATG
chr2	83168373	83168374	chr2:83168374:A:C	rs17379698	A	C	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr2	84034490	84034491	chr2:84034491:T:C	rs80052772	T	C	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	84137521	84137522	chr2:84137522:G:A	rs1918098	G	A	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	84216039	84216040	chr2:84216040:A:G	rs2364259	A	G	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	84459454	84459455	chr2:84459455:C:T	rs143151382	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	84459477	84459478	chr2:84459478:C:G	chr2:84459478:C:G	C	G	C	Sox3.mouse_HMG_3	7	1	-	2.4585136263730325	-3.7949304958343575	AATTAATGTTAATCAAA
chr2	84459485	84459486	chr2:84459486:A:G	rs72830154	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	85097095	85097096	chr2:85097096:G:A	rs7563120	G	A	G	Sox3.mouse_HMG_3	13	1	-	1.4729689809513447	-5.134291629510675	TATGATTTGTAGTCGAG
chr2	85113337	85113338	chr2:85113338:A:C	rs73943051	A	C	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr2	85265017	85265018	chr2:85265018:C:T	rs908301	C	T	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	85278438	85278439	chr2:85278439:T:C	rs6747629	T	C	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	85555463	85555464	chr2:85555464:C:A	rs78185751	C	A	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	85861187	85861188	chr2:85861188:T:C	rs1138484	T	C	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	85918905	85918906	chr2:85918906:C:T	rs6547645	C	T	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	86150860	86150861	chr2:86150861:A:G	chr2:86150861:A:G	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	86414230	86414231	chr2:86414231:G:C	rs882989	G	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	86414231	86414232	chr2:86414232:G:C	rs882990	G	C	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr2	86426369	86426370	chr2:86426370:C:T	rs1468039	C	T	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	86567209	86567210	chr2:86567210:T:G	rs7584882	T	G	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr2	87201553	87201554	chr2:87201554:A:G	rs2953715	A	G	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	87375095	87375096	chr2:87375096:G:A	rs4070932	G	A	.	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	87494123	87494124	chr2:87494124:T:C	rs6760319	T	C	T	Sox3.mouse_HMG_3	4	1	+	1.6470880794599376	1.5039872358192643	TATGTTTGCCAGTCAAG
chr2	88024651	88024652	chr2:88024652:T:C	rs150446375	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	88053457	88053458	chr2:88053458:G:A	rs56035907	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr2	88067656	88067657	chr2:88067657:C:G	rs34109539	C	G	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr2	88177096	88177097	chr2:88177097:A:G	rs1136562	A	G	a	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	88265799	88265800	chr2:88265800:A:G	rs59727886	A	G	g	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr2	88400160	88400161	chr2:88400161:T:C	rs10221774	T	C	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	88479718	88479719	chr2:88479719:A:G	rs77061578	A	G	A	Sox3.mouse_HMG_3	0	1	+	0.9120668776029137	1.7373507787492584	ATGGAATGGCAGGCATG
chr2	88775332	88775333	chr2:88775333:C:A	rs76580253	C	A	N	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	88855465	88855466	chr2:88855466:C:T	rs232234	C	T	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	89840444	89840445	chr2:89840445:A:G	rs796676857	A	G	.	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr2	90170261	90170262	chr2:90170262:A:G	rs114737665	A	G	.	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	90381793	90381794	chr2:90381794:C:T	rs1668792	C	T	.	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	90383759	90383760	chr2:90383760:C:A	rs7369516	C	A	.	Sox3.mouse_HMG_3	3	1	-	5.501175526500816	-1.4053189580138978	ATTGGATTCCATTCAAA
chr2	90386083	90386084	chr2:90386084:C:A	rs78626035	C	A	.	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	90386094	90386095	chr2:90386095:G:A	rs508068	G	A	.	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	90392428	90392429	chr2:90392429:C:A	rs7370785	C	A	.	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	90395761	90395762	chr2:90395762:C:A	rs6421805	C	A	.	Sox3.mouse_HMG_3	8	1	+	3.3736837335964625	3.1933497550965813	AATGAATCCTAATCAAA
chr2	91409155	91409156	chr2:91409156:G:C	rs1369269363	G	C	.	Sox3.mouse_HMG_3	3	1	-	3.991149136029084	10.740639871734135	ATTCAATTCTATTCAAT
chr2	94598731	94598732	chr2:94598732:G:A	rs1288609672	G	A	.	Sox3.mouse_HMG_3	10	1	+	4.809743418157081	11.41769405969788	GATGAATTACGTGCATG
chr2	95260405	95260406	chr2:95260406:C:A	rs1966272	C	A	C	Sox3.mouse_HMG_3	3	1	-	3.159070291861654	-3.747424192653061	GATGGCTGGCATTCAGG
chr2	95584373	95584374	chr2:95584374:A:G	rs371784783	A	G	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr2	96203552	96203553	chr2:96203553:C:A	rs59664047	C	A	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	96911923	96911924	chr2:96911924:A:C	rs6732237	A	C	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	96945273	96945274	chr2:96945274:C:A	rs183345273	C	A	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	97796599	97796600	chr2:97796600:G:T	rs2293679	G	T	T	Sox3.mouse_HMG_3	13	1	-	1.9342014873830906	-4.448435186594286	TGTGAAGTATAGTCAAC
chr2	98415281	98415282	chr2:98415282:A:G	rs17502889	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr2	98834367	98834368	chr2:98834368:A:G	rs1517682	A	G	A	Sox3.mouse_HMG_3	1	1	-	8.246000474435709	7.03921776876891	ATTGTATGACATTCATG
chr2	98849873	98849874	chr2:98849874:A:T	rs12992214	A	T	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	98851877	98851878	chr2:98851878:T:C	rs1949424	T	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	98877333	98877334	chr2:98877334:C:T	rs78765107	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	98896587	98896588	chr2:98896588:C:G	rs1039807430	C	G	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr2	99066396	99066397	chr2:99066397:A:C	rs144812150	A	C	A	Sox3.mouse_HMG_3	4	1	+	6.248025342644481	-0.5025161654749053	AACGAATTGTATTCACA
chr2	99431199	99431200	chr2:99431200:C:T	rs10496337	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	99607231	99607232	chr2:99607232:A:G	rs11123789	A	G	G	Sox3.mouse_HMG_3	2	1	-	1.779042125832573	-4.826836992398358	TATGATCTGCATTCAGA
chr2	99660020	99660021	chr2:99660021:G:A	rs76820663	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr2	99696062	99696063	chr2:99696063:T:A	rs185837224	T	A	T	Sox3.mouse_HMG_3	5	1	-	1.5086045926416187	-5.098836071837093	AGTGAATGTCTTTCTTG
chr2	99825719	99825720	chr2:99825720:C:T	rs4481043	C	T	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	99885239	99885240	chr2:99885240:G:C	rs11682684	G	C	G	Sox3.mouse_HMG_3	15	1	-	1.542109437959461	3.133912038581288	GATGAATTTGAATCACA
chr2	100535948	100535949	chr2:100535949:C:G	rs7423870	C	G	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr2	100633035	100633036	chr2:100633036:A:G	rs4510240	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr2	100690522	100690523	chr2:100690523:G:A	rs75836850	G	A	G	Sox3.mouse_HMG_3	13	1	-	1.6781308766459702	-4.929129733816049	TTTGAAGGGGATTCAAG
chr2	100733732	100733733	chr2:100733733:A:C	chr2:100733733:A:C	A	C	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	100878711	100878712	chr2:100878712:C:T	rs2871389	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr2	100896080	100896081	chr2:100896081:G:A	rs17654772	G	A	G	Sox3.mouse_HMG_3	9	1	-	7.203208509806492	7.210845186798238	GGTGAGTTCCATTCATT
chr2	100929938	100929939	chr2:100929939:G:C	rs17717402	G	C	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	100929942	100929943	chr2:100929943:C:T	rs67033128	C	T	c	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	100967123	100967124	chr2:100967124:A:T	rs7340468	A	T	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr2	101003673	101003674	chr2:101003674:A:G	rs2278722	A	G	A	Sox3.mouse_HMG_3	16	1	-	3.885970038522558	3.019043299050279	GATGAATGGCAGTAGTT
chr2	101120638	101120639	chr2:101120639:C:T	rs78888871	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	101254200	101254201	chr2:101254201:C:G	chr2:101254201:C:G	C	G	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	101301048	101301049	chr2:101301049:G:A	rs13031025	G	A	G	Sox3.mouse_HMG_3	2	1	-	2.000806664606441	8.606685782837372	GACGAAATCCAGTCATT
chr2	101348985	101348986	chr2:101348986:A:T	rs6726192	A	T	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr2	101357594	101357595	chr2:101357595:G:A	rs6543036	G	A	A	Sox3.mouse_HMG_3	3	1	+	1.467826032128535	-4.313738855400698	TCTGAATGGCTTTGATG
chr2	101551945	101551946	chr2:101551946:A:C	rs6543075	A	C	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	101705327	101705328	chr2:101705328:A:G	rs77562420	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr2	101958353	101958354	chr2:101958354:C:T	rs1019032	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	101958375	101958376	chr2:101958376:G:T	rs1019031	G	T	T	Sox3.mouse_HMG_3	8	1	+	1.122771074943452	0.41786866134941425	TGTGGATTGCAGACATG
chr2	101983706	101983707	chr2:101983707:A:C	rs740044	A	C	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr2	102069969	102069970	chr2:102069970:G:A	rs6715090	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr2	102155404	102155405	chr2:102155405:G:C	rs871658	G	C	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	102242029	102242030	chr2:102242030:A:T	rs72998585	A	T	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	102297753	102297754	chr2:102297754:A:G	rs11690644	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	102368210	102368211	chr2:102368211:T:A	rs1882348	T	A	T	Sox3.mouse_HMG_3	15	1	+	1.7550502390697673	-0.5087592251670535	CATGAAATACATTCTTT
chr2	102368223	102368224	chr2:102368224:G:A	rs1558627	G	A	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	102484552	102484553	chr2:102484553:A:G	rs4851594	A	G	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	102793167	102793168	chr2:102793168:A:G	rs2540283	A	G	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	102794019	102794020	chr2:102794020:T:C	rs2215963	T	C	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr2	103233142	103233143	chr2:103233143:T:C	rs4851648	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr2	103393131	103393132	chr2:103393132:T:G	rs142567472	T	G	t	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr2	103447406	103447407	chr2:103447407:T:C	rs266063	T	C	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	103496999	103497000	chr2:103497000:G:A	rs6761396	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	104316306	104316307	chr2:104316307:C:T	rs539685184	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	104316307	104316308	chr2:104316308:G:A	rs141573580	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr2	105076409	105076410	chr2:105076410:C:T	rs56148683	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	105221140	105221141	chr2:105221141:T:C	rs6712932	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	105330172	105330173	chr2:105330173:G:A	chr2:105330173:G:A	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	105369703	105369704	chr2:105369704:T:C	rs17030826	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	105369752	105369753	chr2:105369753:G:A	rs116213921	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	105416399	105416400	chr2:105416400:C:T	rs72836931	C	T	C	Sox3.mouse_HMG_3	3	1	-	1.2093728816610885	-4.572192005868142	GTTGCATTTCCTTCATA
chr2	105434200	105434201	chr2:105434201:G:A	rs11680431	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	105443445	105443446	chr2:105443446:T:C	rs13025654	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr2	105515890	105515891	chr2:105515891:C:A	rs13413404	C	A	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	105515904	105515905	chr2:105515905:T:C	rs13028452	T	C	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr2	105554368	105554369	chr2:105554369:T:C	rs17188560	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	105583172	105583173	chr2:105583173:A:G	rs6741486	A	G	G	Sox3.mouse_HMG_3	0	1	-	4.655175665938744	3.2003050206018795	TATGAATTTTATTAGTA
chr2	105583279	105583280	chr2:105583280:C:A	rs72821584	C	A	C	Sox3.mouse_HMG_3	8	1	+	5.608200838542051	5.42786686004217	ATAGAATGCCAGTCAAG
chr2	105583286	105583287	chr2:105583287:A:G	rs6741618	A	G	G	Sox3.mouse_HMG_3	15	1	+	5.608200838542051	4.7494194916856305	ATAGAATGCCAGTCAAG
chr2	105592655	105592656	chr2:105592656:T:C	rs6705579	T	C	T	Sox3.mouse_HMG_3	8	1	-	0.7311371968593161	1.3542538440371297	CATGGATGACAGACAAG
chr2	105611932	105611933	chr2:105611933:A:G	rs10496400	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	105620169	105620170	chr2:105620170:G:T	rs17031399	G	T	g	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	105803945	105803946	chr2:105803946:C:T	rs1367406	C	T	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	105895608	105895609	chr2:105895609:A:G	rs12612803	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.595386868467508	-0.5047430679697843	AATAAAGGTTAGTCATT
chr2	105946838	105946839	chr2:105946839:G:A	rs3926405	G	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	106053173	106053174	chr2:106053174:G:T	rs73947449	G	T	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	106053216	106053217	chr2:106053217:G:T	rs78644249	G	T	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr2	106068726	106068727	chr2:106068727:C:T	rs35330703	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	106099809	106099810	chr2:106099810:G:A	rs115196931	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	106099833	106099834	chr2:106099834:T:G	rs115979761	T	G	T	Sox3.mouse_HMG_3	8	1	+	4.748404573140857	5.453306986734895	AGTGAATTTTTTTCAAA
chr2	106110223	106110224	chr2:106110224:A:G	rs1901465	A	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	106271615	106271616	chr2:106271616:T:C	rs4676155	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	106531655	106531656	chr2:106531656:T:C	rs11678397	T	C	t	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	106563726	106563727	chr2:106563727:C:G	rs899993897	C	G	c	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	106696080	106696081	chr2:106696081:T:C	rs11124128	T	C	T	Sox3.mouse_HMG_3	1	1	+	6.3513885227475795	5.144605817080781	ATTGAATGCCATTAAAA
chr2	106858025	106858026	chr2:106858026:C:T	rs6543452	C	T	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr2	107434873	107434874	chr2:107434874:C:A	rs266175	C	A	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr2	107434926	107434927	chr2:107434927:G:A	rs266176	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	107596110	107596111	chr2:107596111:A:T	rs884883	A	T	A	Sox3.mouse_HMG_3	4	1	+	2.063696174586334	-4.543744489892376	GGAGAATGCCCTTCATT
chr2	107684804	107684805	chr2:107684805:A:G	rs1155113	A	G	a	Sox3.mouse_HMG_3	1	1	+	1.004164892242321	-2.095965044194971	CATTCATGACATTCAAG
chr2	108413666	108413667	chr2:108413667:C:T	rs56364066	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr2	108448001	108448002	chr2:108448002:C:T	rs3820960	C	T	-	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr2	108579895	108579896	chr2:108579896:G:A	rs61461228	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr2	108640695	108640696	chr2:108640696:G:A	rs1866188	G	A	g	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	108869812	108869813	chr2:108869813:C:T	rs9646942	C	T	T	Sox3.mouse_HMG_3	8	1	+	1.4016190188031648	1.139499273887058	AGTGAAGGCCTTTCATG
chr2	108916260	108916261	chr2:108916261:G:A	rs103855	G	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr2	108940210	108940211	chr2:108940211:G:C	rs260709	G	C	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr2	108950988	108950989	chr2:108950989:A:G	rs260699	A	G	A	Sox3.mouse_HMG_3	6	1	-	2.216820985574878	-4.391129655965919	AATGGATGGCAGACAAA
chr2	108972458	108972459	chr2:108972459:C:T	rs147926529	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr2	109019332	109019333	chr2:109019333:G:A	rs72941974	G	A	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	109164916	109164917	chr2:109164917:A:G	rs117787480	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	109227305	109227306	chr2:109227306:A:G	rs62151308	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	109270347	109270348	chr2:109270348:C:T	rs115077259	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	109350691	109350692	chr2:109350692:C:G	rs11895865	C	G	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	109371894	109371895	chr2:109371895:C:T	rs113872086	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	109398116	109398117	chr2:109398117:A:G	rs111544901	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr2	109460294	109460295	chr2:109460295:A:G	rs11680908	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	109495447	109495448	chr2:109495448:G:A	rs74204843	G	A	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr2	109502666	109502667	chr2:109502667:T:G	rs889504924	T	G	T	Sox3.mouse_HMG_3	6	1	+	3.1498539154521223	-3.6011975697293472	GATGATTATTATTCAAG
chr2	109613455	109613456	chr2:109613456:A:G	rs190410073	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	109720984	109720985	chr2:109720985:C:T	rs180805967	C	T	.	Sox3.mouse_HMG_3	9	1	+	3.7296640512295047	3.7373007282212525	GATGAATGCCTATCAAG
chr2	110107134	110107135	chr2:110107135:G:A	rs78843124	G	A	G	Sox3.mouse_HMG_3	8	1	+	1.8665713701967992	1.243454723018986	GGTGAGTGGCAGTCCTG
chr2	110840787	110840788	chr2:110840788:T:C	rs999643	T	C	C	Sox3.mouse_HMG_3	15	1	+	1.7957345274223189	-2.9186588842927494	CATGAATTTCAGGCTTG
chr2	110840788	110840789	chr2:110840789:G:A	rs999642	G	A	A	Sox3.mouse_HMG_3	16	1	+	1.7957345274223189	1.7597940709697932	CATGAATTTCAGGCTTG
chr2	111046838	111046839	chr2:111046839:T:A	rs55808773	T	A	T	Sox3.mouse_HMG_3	12	1	+	7.028054430349631	0.9152435706223996	CATGAATGAGAGTCAGG
chr2	111046839	111046840	chr2:111046840:C:A	rs56000391	C	A	C	Sox3.mouse_HMG_3	13	1	+	7.028054430349631	0.6454177563722536	CATGAATGAGAGTCAGG
chr2	111191983	111191984	chr2:111191984:C:G	rs586283	C	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	111533840	111533841	chr2:111533841:A:G	rs145862387	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.1939339374806741	-3.5204594742343938	GTTCAGTGCTAGTCATG
chr2	111535009	111535010	chr2:111535010:C:T	rs992372684	C	T	-	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	111617847	111617848	chr2:111617848:C:T	rs10168169	C	T	c	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	111617872	111617873	chr2:111617873:G:A	rs11686181	G	A	g	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	111618905	111618906	chr2:111618906:T:C	rs140483483	T	C	t	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	111618929	111618930	chr2:111618930:G:A	rs548003323	G	A	g	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	111662766	111662767	chr2:111662767:G:A	rs72952456	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr2	111667962	111667963	chr2:111667963:A:G	rs1399665	A	G	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr2	111732793	111732794	chr2:111732794:C:G	rs77403931	C	G	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	111746991	111746992	chr2:111746992:A:G	rs2686011	A	G	G	Sox3.mouse_HMG_3	9	1	-	5.566435088688844	5.558798411697098	TCTGAATTATATTTATT
chr2	112290207	112290208	chr2:112290208:A:G	rs116647508	A	G	A	Sox3.mouse_HMG_3	1	1	-	4.027576700266015	2.8207939945992146	TTTGAATGTTTGTCAGG
chr2	112315184	112315185	chr2:112315185:A:T	rs6760417	A	T	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr2	112619624	112619625	chr2:112619625:A:G	rs17647292	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	112836330	112836331	chr2:112836331:T:G	rs374369499	T	G	T	Sox3.mouse_HMG_3	15	1	+	7.1615270494288445	4.038936238335603	AGTGCATGGCAGTCATG
chr2	112947823	112947824	chr2:112947824:C:T	rs78763991	C	T	c	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr2	113031012	113031013	chr2:113031013:C:G	rs3752739	C	G	c	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr2	113090134	113090135	chr2:113090135:C:T	rs17669228	C	T	C	Sox3.mouse_HMG_3	9	1	+	1.3906584989615651	1.398295175953311	GAGGAATGGCATTCTCA
chr2	113194346	113194347	chr2:113194347:C:A	rs6542124	C	A	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	113209144	113209145	chr2:113209145:G:C	rs74885158	G	C	G	Sox3.mouse_HMG_3	9	1	+	2.3125323829416784	7.652461390316242	TGTGAATGAGAGCCATG
chr2	113697752	113697753	chr2:113697753:A:G	rs78460688	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.411792896641354	-4.196157744899444	TATGAATGTCATGAAGG
chr2	113899897	113899898	chr2:113899898:G:A	rs1403401	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	114350499	114350500	chr2:114350500:C:G	rs144057267	C	G	c	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr2	114373182	114373183	chr2:114373183:T:G	rs4849330	T	G	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr2	114442375	114442376	chr2:114442376:A:G	rs1272522929	A	G	A	Sox3.mouse_HMG_3	6	1	-	3.856012550769834	-2.7519380907709623	GATCAATTGCAGTCCTG
chr2	115814453	115814454	chr2:115814454:A:G	rs7578999	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr2	115818649	115818650	chr2:115818650:A:G	rs12468733	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	115921432	115921433	chr2:115921433:T:C	rs12711838	T	C	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	115975760	115975761	chr2:115975761:G:T	rs1374597	G	T	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	116952508	116952509	chr2:116952509:A:G	rs74860332	A	G	A	Sox3.mouse_HMG_3	15	1	-	3.6258442437956084	-1.08854916791946	TAGGAGTGTCAGTCATG
chr2	116994915	116994916	chr2:116994916:T:A	rs74856241	T	A	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	117436298	117436299	chr2:117436299:T:G	rs2901591	T	G	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr2	117485556	117485557	chr2:117485557:C:T	rs12478892	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	118054503	118054504	chr2:118054504:C:T	rs34971802	C	T	C	Sox3.mouse_HMG_3	13	1	+	3.8803335335742632	-2.7269270768877574	AATGGATGATATGCATT
chr2	118123424	118123425	chr2:118123425:G:A	rs13400438	G	A	G	Sox3.mouse_HMG_3	3	1	+	5.839274080031319	0.05770919250208706	AATGCATTTTATTCAGT
chr2	118149782	118149783	chr2:118149783:A:G	rs7586026	A	G	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	118590050	118590051	chr2:118590051:G:A	rs567004413	G	A	G	Sox3.mouse_HMG_3	0	1	+	1.982121084893052	1.1568371837467084	GATGAACTGCATGCAAT
chr2	118723568	118723569	chr2:118723569:C:T	rs56263559	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr2	118723592	118723593	chr2:118723593:G:A	rs56302761	G	A	G	Sox3.mouse_HMG_3	2	1	-	1.8339213205344043	8.439800438765335	CACGAATTCCAGGCATG
chr2	118723604	118723605	chr2:118723605:C:T	rs11678748	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	118842448	118842449	chr2:118842449:C:T	rs184945714	C	T	C	Sox3.mouse_HMG_3	3	1	+	2.0252973288375165	1.8682935800278517	AAGCAATGACATTCAAA
chr2	119115177	119115178	chr2:119115178:G:A	rs12611941	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr2	119256335	119256336	chr2:119256336:C:G	rs1867749	C	G	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr2	119766185	119766186	chr2:119766186:C:T	rs13015818	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr2	119856771	119856772	chr2:119856772:G:A	rs189649061	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	119903424	119903425	chr2:119903425:T:C	rs3106242	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr2	120104876	120104877	chr2:120104877:G:T	rs12603	G	T	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	120352810	120352811	chr2:120352811:G:C	rs7581178	G	C	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	120373794	120373795	chr2:120373795:G:T	rs35444305	G	T	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	120399376	120399377	chr2:120399377:G:T	rs12622427	G	T	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr2	120399391	120399392	chr2:120399392:C:T	rs12616213	C	T	C	Sox3.mouse_HMG_3	11	1	-	2.538781895813936	-2.1113928299922025	CATGAAAGCCAGGCATG
chr2	120457884	120457885	chr2:120457885:G:A	rs140081302	G	A	G	Sox3.mouse_HMG_3	14	1	+	0.8984857938490693	7.28043196027598	TATGAATGGGATTAGTG
chr2	120707285	120707286	chr2:120707286:G:A	rs13387840	G	A	g	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr2	120716300	120716301	chr2:120716301:A:C	rs17050359	A	C	C	Sox3.mouse_HMG_3	4	1	+	0.8778563632646763	-5.8726851448547075	GATGAATGCCCGTTAGA
chr2	120716324	120716325	chr2:120716325:G:T	rs62167021	G	T	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	120742826	120742827	chr2:120742827:C:T	rs74765212	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	120826172	120826173	chr2:120826173:A:G	rs11887240	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr2	121100364	121100365	chr2:121100365:C:T	rs13427814	C	T	C	Sox3.mouse_HMG_3	0	1	-	2.133659693566223	1.3083757924198791	GAAGGATGCTAGTCAGA
chr2	121249274	121249275	chr2:121249275:A:C	rs17006283	A	C	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	121297661	121297662	chr2:121297662:T:C	rs2580332	T	C	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	121483360	121483361	chr2:121483361:G:A	rs79158679	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	121855169	121855170	chr2:121855170:T:G	rs11122875	T	G	T	Sox3.mouse_HMG_3	6	1	-	9.63058053994562	9.773681383586295	TATGAAAGGCAGTCATT
chr2	122077992	122077993	chr2:122077993:T:C	rs874107	T	C	C	Sox3.mouse_HMG_3	11	1	+	4.768006525863879	-1.316604300238066	ATTGAATTACATACAGG
chr2	122621960	122621961	chr2:122621961:A:G	rs142680645	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr2	122909777	122909778	chr2:122909778:A:G	rs1028185	A	G	a	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	123095421	123095422	chr2:123095422:C:T	rs187070792	C	T	C	Sox3.mouse_HMG_3	3	1	-	2.0364814648885816	-3.745083422640649	GTTGTATTACAGTCACA
chr2	123322266	123322267	chr2:123322267:T:A	rs12470381	T	A	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	123569161	123569162	chr2:123569162:C:T	rs7594027	C	T	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	123596849	123596850	chr2:123596850:T:C	rs4848872	T	C	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	123682816	123682817	chr2:123682817:A:G	rs6749984	A	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	123696541	123696542	chr2:123696542:G:A	rs17010404	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	124151598	124151599	chr2:124151599:T:C	rs12615559	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	124392553	124392554	chr2:124392554:G:T	rs1430258	G	T	G	Sox3.mouse_HMG_3	3	1	+	7.142267165625875	0.23577268111116245	ATTGAAATTTATTCATA
chr2	124573548	124573549	chr2:124573549:T:C	rs10445861	T	C	T	Sox3.mouse_HMG_3	3	1	-	3.919959658848602	9.701524546377833	ATTAAATTATATTCAGT
chr2	124877251	124877252	chr2:124877252:A:G	rs2685165	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	125006898	125006899	chr2:125006899:G:A	rs10167384	G	A	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr2	125168552	125168553	chr2:125168553:T:C	rs4625907	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	125310948	125310949	chr2:125310949:T:A	rs313288	T	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	126370356	126370357	chr2:126370357:A:G	rs359708	A	G	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	126381182	126381183	chr2:126381183:C:T	rs190757360	C	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr2	126413161	126413162	chr2:126413162:T:C	rs11674115	T	C	C	Sox3.mouse_HMG_3	10	1	-	2.4369254475809567	-4.1710251939598395	GCAGAATTTGATTCATA
chr2	126434839	126434840	chr2:126434840:G:C	rs11682818	G	C	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	126529600	126529601	chr2:126529601:G:A	rs6727953	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	126779845	126779846	chr2:126779846:A:T	rs78560623	A	T	A	Sox3.mouse_HMG_3	1	1	+	6.289477833963332	3.3194010257742375	GATGTATGGTATTAATG
chr2	126856876	126856877	chr2:126856877:C:T	rs4233607	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	126987264	126987265	chr2:126987265:C:T	rs482901	C	T	t	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	127083760	127083761	chr2:127083761:T:C	rs13426725	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	127181839	127181840	chr2:127181840:T:C	rs10195813	T	C	T	Sox3.mouse_HMG_3	15	1	+	0.4092911188039383	-4.30510229291113	GCTGACCGGCAGTCATA
chr2	127463292	127463293	chr2:127463293:C:T	rs192369627	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	127610659	127610660	chr2:127610660:T:C	rs777433	T	C	C	Sox3.mouse_HMG_3	11	1	+	6.282889831253271	0.19827900515132535	AATGAATTACATGCAGT
chr2	127630167	127630168	chr2:127630168:A:T	rs11684148	A	T	a	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr2	127659204	127659205	chr2:127659205:G:A	rs57494252	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	127771119	127771120	chr2:127771120:C:G	rs116634293	C	G	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr2	127771159	127771160	chr2:127771160:C:T	rs117796085	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	127969808	127969809	chr2:127969809:C:T	rs2461444	C	T	C	Sox3.mouse_HMG_3	13	1	+	4.852538120648577	-1.7547224898134433	TAAGAATACTAGTCATG
chr2	128062683	128062684	chr2:128062684:C:T	rs6756281	C	T	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	128249886	128249887	chr2:128249887:T:C	rs6732469	T	C	t	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr2	128286446	128286447	chr2:128286447:G:A	rs1002339952	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	128324511	128324512	chr2:128324512:C:T	rs73958904	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	128324516	128324517	chr2:128324517:T:C	rs2595223	T	C	C	Sox3.mouse_HMG_3	14	1	-	1.3704040602951753	-5.011542106131736	ACTGCATGGCAGTCACG
chr2	128364170	128364171	chr2:128364171:G:A	rs189407269	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr2	128746976	128746977	chr2:128746977:G:A	rs79837540	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr2	129055868	129055869	chr2:129055869:C:G	rs76166152	C	G	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr2	129655842	129655843	chr2:129655843:C:T	rs77983503	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	129670815	129670816	chr2:129670816:T:G	rs3109276	T	G	G	Sox3.mouse_HMG_3	12	1	+	4.773419778801774	-1.6076550675201364	GACGTATTCTATTCATG
chr2	129712786	129712787	chr2:129712787:G:T	rs78112430	G	T	g	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	129766581	129766582	chr2:129766582:G:C	rs74577922	G	C	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	129766620	129766621	chr2:129766621:C:G	rs573024368	C	G	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	130136102	130136103	chr2:130136103:C:T	rs56036584	C	T	.	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr2	130154781	130154782	chr2:130154782:C:A	rs369929768	C	A	.	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	130166959	130166960	chr2:130166960:G:A	rs28404396	G	A	.	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr2	130166972	130166973	chr2:130166973:T:A	rs28473698	T	A	.	Sox3.mouse_HMG_3	11	1	+	7.911710149171372	1.8270993230694261	CATCAATGACATTCAAG
chr2	130818647	130818648	chr2:130818648:G:A	rs6749628	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr2	131061491	131061492	chr2:131061492:G:T	rs112721520	G	T	G	Sox3.mouse_HMG_3	3	1	+	13.249378671622488	6.342884187107772	GATGAATTATAGTCAGG
chr2	132478031	132478032	chr2:132478032:T:C	rs62167441	T	C	T	Sox3.mouse_HMG_3	9	1	+	4.260625773467696	4.25298909647595	CATGAATCATATTAATA
chr2	132545629	132545630	chr2:132545630:C:T	rs714546	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr2	132561462	132561463	chr2:132561463:T:C	rs3109143	T	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	132687967	132687968	chr2:132687968:T:C	rs193039646	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr2	132850974	132850975	chr2:132850975:A:C	rs16842479	A	C	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr2	132941504	132941505	chr2:132941505:A:T	rs281578	A	T	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	133131061	133131062	chr2:133131062:T:C	rs7598823	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr2	133139720	133139721	chr2:133139721:C:T	rs1434227	C	T	T	Sox3.mouse_HMG_3	13	1	-	6.6592304252524475	6.883854361737091	AATGAATGACAGTGAGG
chr2	133147256	133147257	chr2:133147257:A:G	rs1821426	A	G	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	133286481	133286482	chr2:133286482:G:T	rs151235891	G	T	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	133679002	133679003	chr2:133679003:C:G	rs1993135	C	G	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	133755590	133755591	chr2:133755591:C:T	rs7562841	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	133891181	133891182	chr2:133891182:T:C	rs62164710	T	C	C	Sox3.mouse_HMG_3	14	1	-	0.5877182630792692	-5.794227903347641	CATGATTGACATTTAGG
chr2	134014615	134014616	chr2:134014616:C:T	rs16829907	C	T	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	134245378	134245379	chr2:134245379:G:T	rs72976117	G	T	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr2	134301407	134301408	chr2:134301408:C:A	rs1274363471	C	A	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr2	134450903	134450904	chr2:134450904:G:A	rs75561369	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	134511446	134511447	chr2:134511447:G:T	rs543549	G	T	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	134513672	134513673	chr2:134513673:T:C	rs140375974	T	C	T	Sox3.mouse_HMG_3	9	1	-	1.6099396493115778	2.3242292664453323	GATGAATGCAGGTCAGG
chr2	134582649	134582650	chr2:134582650:T:C	rs76724959	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	135001574	135001575	chr2:135001575:T:C	rs1867837	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	135212953	135212954	chr2:135212954:T:G	rs944516421	T	G	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	135662390	135662391	chr2:135662391:A:G	rs1446584	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	135785168	135785169	chr2:135785169:T:C	rs72972110	T	C	T	Sox3.mouse_HMG_3	5	1	-	1.4180357558952887	-5.070799166175576	AATGCAGTACATTCATC
chr2	136112371	136112372	chr2:136112372:G:T	rs114471862	G	T	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr2	136225994	136225995	chr2:136225995:G:T	rs78290184	G	T	G	Sox3.mouse_HMG_3	8	1	-	4.612046487174446	4.431712508674565	CTTGAATTCTATGCAAA
chr2	136894107	136894108	chr2:136894108:C:A	rs548794	C	A	C	Sox3.mouse_HMG_3	9	1	+	8.234036475172203	2.179817850663885	GGTGGATTTCATTCATG
chr2	136927716	136927717	chr2:136927717:A:G	rs1344714	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	137672742	137672743	chr2:137672743:A:G	rs57374424	A	G	A	Sox3.mouse_HMG_3	6	1	-	3.5664920710098467	-3.041458570530951	TATAAATTGCTTTCATC
chr2	137924072	137924073	chr2:137924073:T:C	rs1968736	T	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr2	138060390	138060391	chr2:138060391:G:T	rs138512426	G	T	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	138740608	138740609	chr2:138740609:T:C	rs192796253	T	C	T	Sox3.mouse_HMG_3	16	1	-	1.461784529568335	1.4977249860208606	TCAGAATTGCCTTCATA
chr2	138919472	138919473	chr2:138919473:C:T	rs181673241	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr2	140442082	140442083	chr2:140442083:A:T	rs1878742	A	T	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	140504154	140504155	chr2:140504155:G:A	rs72901703	G	A	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr2	140578561	140578562	chr2:140578562:T:C	rs114353427	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	140899581	140899582	chr2:140899582:T:G	chr2:140899582:T:G	T	G	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	140988464	140988465	chr2:140988465:C:T	rs34307005	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr2	141341265	141341266	chr2:141341266:C:T	rs2683840	C	T	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	141361832	141361833	chr2:141361833:A:G	rs1402470	A	G	A	Sox3.mouse_HMG_3	16	1	-	2.4897175374051854	1.6227907979329066	AATGAATGATAGATATT
chr2	142315589	142315590	chr2:142315590:T:C	rs12691644	T	C	T	Sox3.mouse_HMG_3	14	1	-	4.809548591230205	-1.5723975751967059	AATGAATTCTGGTCAGT
chr2	142591527	142591528	chr2:142591528:A:G	rs34456273	A	G	G	Sox3.mouse_HMG_3	5	1	+	1.833397348898553	-4.6554375731723106	TATGTAATTTATTCAAG
chr2	142803205	142803206	chr2:142803206:T:C	rs6731393	T	C	C	Sox3.mouse_HMG_3	10	1	-	0.6115557739825139	-5.996394867558283	CATCAGTGGCAGTCAAG
chr2	142858059	142858060	chr2:142858060:T:C	rs12478872	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	142966463	142966464	chr2:142966464:A:G	rs62169908	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	142980521	142980522	chr2:142980522:T:C	rs9679256	T	C	T	Sox3.mouse_HMG_3	0	1	+	2.1236523433543057	0.668781698017441	TATGAGTTGCATTCTGA
chr2	142980549	142980550	chr2:142980550:G:A	rs62169913	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	142989180	142989181	chr2:142989181:C:T	rs10496936	C	T	t	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	143088014	143088015	chr2:143088015:T:C	rs1561543	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	143159662	143159663	chr2:143159663:C:T	rs78429249	C	T	C	Sox3.mouse_HMG_3	0	1	-	1.0286790833653057	0.2033951822189617	GATCAATGGTTTTCACA
chr2	143212279	143212280	chr2:143212280:G:A	rs4662316	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	143546165	143546166	chr2:143546166:C:T	rs149391812	C	T	C	Sox3.mouse_HMG_3	16	1	-	3.5788413653033437	3.542900908850818	GATGATTGAGATTCAGG
chr2	143607306	143607307	chr2:143607307:C:T	rs13389286	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr2	143615199	143615200	chr2:143615200:G:A	rs10928189	G	A	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr2	143840862	143840863	chr2:143840863:A:G	rs1257344	A	G	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr2	143840874	143840875	chr2:143840875:T:C	rs13012919	T	C	T	Sox3.mouse_HMG_3	9	1	+	4.877316004450915	4.869679327459169	AATGGATTCTATTCACT
chr2	143874998	143874999	chr2:143874999:G:A	rs11682835	G	A	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	144434898	144434899	chr2:144434899:A:G	rs71428031	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	144713721	144713722	chr2:144713722:A:T	rs67963154	A	T	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	144988235	144988236	chr2:144988236:T:G	chr2:144988236:T:G	T	G	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	145325764	145325765	chr2:145325765:T:C	rs10496977	T	C	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	145356164	145356165	chr2:145356165:G:T	rs961414	G	T	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	145761663	145761664	chr2:145761664:T:G	rs2704796	T	G	T	Sox3.mouse_HMG_3	12	1	+	1.658582210864541	-4.722492635457369	TGTGAAGTGCATTGATA
chr2	146313341	146313342	chr2:146313342:A:C	rs62168426	A	C	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	147068202	147068203	chr2:147068203:T:C	rs13396579	T	C	T	Sox3.mouse_HMG_3	14	1	-	1.985049088149041	-4.39689707827787	TTGGAATTTCAGTCAGT
chr2	147100062	147100063	chr2:147100063:A:C	rs778110	A	C	A	Sox3.mouse_HMG_3	11	1	-	4.1721386039044495	2.7377025036086424	TATGAAATCCTTTCATA
chr2	147125977	147125978	chr2:147125978:A:G	rs10181790	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr2	147355860	147355861	chr2:147355861:C:T	rs72861845	C	T	C	Sox3.mouse_HMG_3	3	1	-	3.31084632990562	-2.47071855762361	GGGGAATTTCAGTCAGG
chr2	147355862	147355863	chr2:147355863:C:T	rs72861846	C	T	C	Sox3.mouse_HMG_3	1	1	-	3.31084632990562	6.410976266342911	GGGGAATTTCAGTCAGG
chr2	147490692	147490693	chr2:147490693:T:C	rs1371033	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.7555602161318529	-4.850318902099078	CATGCATTACATTCTTT
chr2	147696774	147696775	chr2:147696775:T:C	rs1919445	T	C	T	Sox3.mouse_HMG_3	11	1	+	4.908389110151419	-1.1762217159505262	AATGACTTTGATTCATA
chr2	148619981	148619982	chr2:148619982:A:G	rs114264856	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	148721606	148721607	chr2:148721607:A:G	rs34270130	A	G	A	Sox3.mouse_HMG_3	3	1	-	0.9658704938775604	1.122874242687225	AATTAATGTCAGGCATC
chr2	148775227	148775228	chr2:148775228:T:C	rs34695108	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr2	149017721	149017722	chr2:149017722:A:G	rs4591316	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.7642670429807463	-4.84368359856005	TGAGAATTGTATTCCTT
chr2	149086215	149086216	chr2:149086216:A:G	rs1474392	A	G	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	149156344	149156345	chr2:149156345:T:A	rs229319	T	A	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	149769015	149769016	chr2:149769016:G:A	rs730919	G	A	A	Sox3.mouse_HMG_3	13	1	-	1.9348205959166183	-4.672440014545402	TCTGAAATTTAGTCAGA
chr2	149924199	149924200	chr2:149924200:A:G	rs147517473	A	G	a	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	149924230	149924231	chr2:149924231:A:T	rs4499448	A	T	a	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	150134721	150134722	chr2:150134722:G:T	rs330605	G	T	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	150230151	150230152	chr2:150230152:G:C	rs4434022	G	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	150438801	150438802	chr2:150438802:G:C	rs78691076	G	C	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr2	150621993	150621994	chr2:150621994:T:G	rs571865068	T	G	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	150695815	150695816	chr2:150695816:A:T	rs9973439	A	T	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	150787688	150787689	chr2:150787689:C:T	rs962052	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr2	150875435	150875436	chr2:150875436:C:T	rs1990149	C	T	T	Sox3.mouse_HMG_3	0	1	-	1.195940747839537	0.3706568466931921	GTTGATTGGGATTCAGA
chr2	150947393	150947394	chr2:150947394:T:G	rs1385429	T	G	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	151036092	151036093	chr2:151036093:A:C	rs10195046	A	C	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr2	151064057	151064058	chr2:151064058:G:A	rs6731235	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr2	151102338	151102339	chr2:151102339:T:C	rs80007889	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr2	151190040	151190041	chr2:151190041:C:T	rs11889191	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr2	151262227	151262228	chr2:151262228:G:A	rs77536789	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr2	151423850	151423851	chr2:151423851:G:A	rs2444256	G	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	151644442	151644443	chr2:151644443:A:G	rs78226234	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	151672395	151672396	chr2:151672396:C:G	rs35654397	C	G	C	Sox3.mouse_HMG_3	0	1	-	3.4336753731707406	1.7098838740341213	GAGGAATGTCAATCAAA
chr2	151757882	151757883	chr2:151757883:G:A	rs6754783	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr2	151774634	151774635	chr2:151774635:T:C	chr2:151774635:T:C	T	C	T	Sox3.mouse_HMG_3	12	1	+	1.9579820661497547	-4.234871501251011	TGTGAAAGCCTTTCATG
chr2	151829176	151829177	chr2:151829177:C:T	rs12693126	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr2	152163731	152163732	chr2:152163732:A:C	rs72864754	A	C	A	Sox3.mouse_HMG_3	2	1	+	5.487326771284724	4.608776367393417	AAAGAATTGCATTCCTG
chr2	152341787	152341788	chr2:152341788:A:C	rs4311022	A	C	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	152406225	152406226	chr2:152406226:G:C	rs4664578	G	C	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	152417371	152417372	chr2:152417372:G:C	rs4371310	G	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	152433977	152433978	chr2:152433978:A:G	rs12693362	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	152632809	152632810	chr2:152632810:C:T	rs72871163	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr2	153059998	153059999	chr2:153059999:A:G	rs79850609	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	153061612	153061613	chr2:153061613:T:C	rs4664643	T	C	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr2	153101428	153101429	chr2:153101429:C:G	rs73020339	C	G	C	Sox3.mouse_HMG_3	9	1	+	2.242793217755171	-3.0971357896193936	CAGGAATGTCAGGCATA
chr2	153645104	153645105	chr2:153645105:A:C	rs13015333	A	C	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	153870496	153870497	chr2:153870497:A:G	rs1444687	A	G	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	153939441	153939442	chr2:153939442:A:G	rs17511040	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	153955819	153955820	chr2:153955820:C:T	rs11900481	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr2	154065005	154065006	chr2:154065006:A:C	rs2176656	A	C	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	154486647	154486648	chr2:154486648:A:G	rs148231269	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	154497198	154497199	chr2:154497199:C:T	rs249703	C	T	C	Sox3.mouse_HMG_3	11	1	-	1.3726736439583533	-3.2775010818477845	CCTGAATTCCAGACAGA
chr2	154591202	154591203	chr2:154591203:T:C	rs774508	T	C	T	Sox3.mouse_HMG_3	15	1	+	9.3239259217017	4.609532509986631	CATGAATTACCTTCATG
chr2	154740984	154740985	chr2:154740985:T:C	rs80336448	T	C	T	Sox3.mouse_HMG_3	14	1	-	1.271179733657985	-5.110766432768926	CATTAATTCCAGTTATA
chr2	154794687	154794688	chr2:154794688:A:T	rs2591154	A	T	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr2	154826701	154826702	chr2:154826702:C:G	rs116385850	C	G	C	Sox3.mouse_HMG_3	12	1	+	1.4061951496056666	1.2179738706845231	GATGAATGTTAGCAAGA
chr2	155377366	155377367	chr2:155377367:T:A	rs1347103807	T	A	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr2	155452329	155452330	chr2:155452330:T:A	rs1023977	T	A	T	Sox3.mouse_HMG_3	8	1	-	2.9946429929827953	2.9128572265665706	GATGGATGACATACAGA
chr2	155502784	155502785	chr2:155502785:A:G	rs2135267	A	G	G	Sox3.mouse_HMG_3	12	1	-	4.134409893295888	-2.058443674104879	AATTAATTCTAATCATA
chr2	155652076	155652077	chr2:155652077:G:T	rs2048932	G	T	G	Sox3.mouse_HMG_3	8	1	-	2.68703957844843	2.506705599948549	AATGAATTCAATACAAA
chr2	155853728	155853729	chr2:155853729:C:T	rs62174791	C	T	C	Sox3.mouse_HMG_3	16	1	-	1.8410338914128295	1.8050934349603038	TGTCATTGTCATTCATG
chr2	156005715	156005716	chr2:156005716:G:C	rs12470684	G	C	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr2	156321103	156321104	chr2:156321104:G:C	rs1150143	G	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr2	156731916	156731917	chr2:156731917:T:C	rs4664212	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	157479765	157479766	chr2:157479766:G:A	rs78440177	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	157761685	157761686	chr2:157761686:T:C	rs79561112	T	C	T	Sox3.mouse_HMG_3	1	1	+	1.4694753938385314	0.2626926881717304	GTTAAATGGCTTTCAAA
chr2	157761686	157761687	chr2:157761687:T:C	rs78582919	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.4694753938385314	-5.136403724392398	GTTAAATGGCTTTCAAA
chr2	157837608	157837609	chr2:157837609:C:T	rs10933443	C	T	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr2	157839975	157839976	chr2:157839976:T:G	rs66486668	T	G	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	157840014	157840015	chr2:157840015:G:C	rs72925217	G	C	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	157899153	157899154	chr2:157899154:C:T	rs80054641	C	T	C	Sox3.mouse_HMG_3	13	1	-	0.5258284343553905	0.7504523708400344	GATGAATGGAAATGATG
chr2	158190652	158190653	chr2:158190653:A:C	rs4664927	A	C	A	Sox3.mouse_HMG_3	10	1	+	2.6385135037677694	-4.1125379814137	TATGTATTGCATTTAAA
chr2	158211734	158211735	chr2:158211735:C:A	chr2:158211735:C:A	C	A	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	158486867	158486868	chr2:158486868:A:G	rs76556881	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	158575452	158575453	chr2:158575453:C:T	rs1463675737	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	158575490	158575491	chr2:158575491:A:G	rs112790333	A	G	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	158603637	158603638	chr2:158603638:T:C	rs1476672	T	C	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	158781611	158781612	chr2:158781612:A:C	rs61129598	A	C	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	158904938	158904939	chr2:158904939:A:C	rs771016668	A	C	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr2	158929427	158929428	chr2:158929428:T:C	rs6738420	T	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	158986021	158986022	chr2:158986022:C:T	rs842063	C	T	C	Sox3.mouse_HMG_3	0	1	-	2.391707654855618	1.5664237537092738	GAGAAATGATAGTCAAA
chr2	159126694	159126695	chr2:159126695:A:T	rs34324915	A	T	A	Sox3.mouse_HMG_3	12	1	-	2.416693914206857	-3.6961169455203735	AATGAATTGTCTTAATC
chr2	159126726	159126727	chr2:159126727:A:C	chr2:159126727:A:C	A	C	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	159136327	159136328	chr2:159136328:C:T	rs115827568	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	159210135	159210136	chr2:159210136:C:G	rs73967239	C	G	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	159243707	159243708	chr2:159243708:T:C	rs79533393	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	159347186	159347187	chr2:159347187:G:A	rs7576570	G	A	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr2	159562141	159562142	chr2:159562142:T:C	rs35299907	T	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	159636613	159636614	chr2:159636614:G:C	rs2357382	G	C	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr2	159658227	159658228	chr2:159658228:C:T	rs7594159	C	T	T	Sox3.mouse_HMG_3	15	1	+	3.70923203856948	8.423625450284549	CATGAATTTCATTAACT
chr2	159774971	159774972	chr2:159774972:A:G	rs12997309	A	G	A	Sox3.mouse_HMG_3	2	1	-	-0.032817081492642064	-6.6386961997235705	AGTGAAAGCCTGTCATG
chr2	159829590	159829591	chr2:159829591:T:C	rs16844374	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr2	159829737	159829738	chr2:159829738:C:T	rs2556095	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr2	160109971	160109972	chr2:160109972:A:G	rs78437253	A	G	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	160339333	160339334	chr2:160339334:T:A	rs74843684	T	A	T	Sox3.mouse_HMG_3	10	1	-	5.198397856832945	-1.5526536283485246	CTTGAATGTTATTAAAA
chr2	160461673	160461674	chr2:160461674:C:T	rs147435169	C	T	C	Sox3.mouse_HMG_3	0	1	-	1.6412569261616903	0.8159730250153463	GGTGAGTGGCAGTGATG
chr2	160511202	160511203	chr2:160511203:T:C	rs6750595	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	160576176	160576177	chr2:160576177:A:G	rs114707691	A	G	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	160612585	160612586	chr2:160612586:T:C	rs76248825	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr2	160816822	160816823	chr2:160816823:T:C	rs1026819	T	C	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr2	160920159	160920160	chr2:160920160:C:T	rs62194733	C	T	C	Sox3.mouse_HMG_3	9	1	+	10.233170759930452	10.240807436922196	TCTGAATGGCAGTCAGA
chr2	161063853	161063854	chr2:161063854:A:G	rs139475499	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	162036827	162036828	chr2:162036828:C:A	rs76077165	C	A	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	162297740	162297741	chr2:162297741:T:A	rs986421188	T	A	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	162300478	162300479	chr2:162300479:T:A	rs188678157	T	A	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	163059876	163059877	chr2:163059877:A:G	rs2451289	A	G	A	Sox3.mouse_HMG_3	5	1	+	6.415439705968159	-0.07339521610270383	GATGAATGACAAACATA
chr2	163169686	163169687	chr2:163169687:G:A	rs1489636	G	A	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	163213708	163213709	chr2:163213709:A:G	rs6706079	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr2	163346381	163346382	chr2:163346382:A:T	rs72879354	A	T	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr2	163523687	163523688	chr2:163523688:G:A	rs2389932	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr2	163604436	163604437	chr2:163604437:A:G	rs7572130	A	G	A	Sox3.mouse_HMG_3	2	1	-	8.24808962723326	1.6422105090023298	TTTTAATTGTATTCATA
chr2	163606975	163606976	chr2:163606976:T:A	rs59950510	T	A	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr2	163987737	163987738	chr2:163987738:A:T	rs150970010	A	T	A	Sox3.mouse_HMG_3	14	1	+	3.7597601058429504	-2.62218606058396	CATGAATTCTAATAATA
chr2	164470759	164470760	chr2:164470760:C:T	rs12464219	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	164697791	164697792	chr2:164697792:C:T	rs78970517	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	164697798	164697799	chr2:164697799:C:A	rs12692737	C	A	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	164733948	164733949	chr2:164733949:C:T	rs7574791	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr2	164777645	164777646	chr2:164777646:G:A	rs355886	G	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	164874209	164874210	chr2:164874210:T:A	rs12998590	T	A	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr2	165164138	165164139	chr2:165164139:T:C	rs7556825	T	C	T	Sox3.mouse_HMG_3	6	1	+	3.9674215525870284	-2.6405290889537687	ATTAAATTGTAGTCAAT
chr2	165576753	165576754	chr2:165576754:T:C	rs75761462	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr2	165819775	165819776	chr2:165819776:A:C	chr2:165819776:A:C	A	C	A	Sox3.mouse_HMG_3	14	1	+	1.0020547367276993	-5.379891429699211	CATGAATGCTATGTAGG
chr2	165844875	165844876	chr2:165844876:C:T	rs12999477	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	165911581	165911582	chr2:165911582:T:C	rs7557045	T	C	T	Sox3.mouse_HMG_3	6	1	+	4.850742112779483	-1.757208528761315	GAAGAATTGTAGGCATA
chr2	166084414	166084415	chr2:166084415:T:C	rs487374	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	166356495	166356496	chr2:166356496:C:T	rs13431341	C	T	c	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	166464550	166464551	chr2:166464551:C:T	rs4476366	C	T	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	167401303	167401304	chr2:167401304:A:T	rs1403902	A	T	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr2	167925869	167925870	chr2:167925870:C:G	rs12469385	C	G	C	Sox3.mouse_HMG_3	13	1	+	1.4470393332777463	-5.160221277184274	GATAAATTGTGGTCAGA
chr2	167966454	167966455	chr2:167966455:T:C	rs12613574	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	167966482	167966483	chr2:167966483:T:C	rs16854416	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	168014883	168014884	chr2:168014884:A:T	rs4667546	A	T	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr2	168016318	168016319	chr2:168016319:T:A	rs6759360	T	A	A	Sox3.mouse_HMG_3	5	1	-	3.0658829683489564	-3.541557696129754	CCTGAATGCTAGTCTTC
chr2	168031105	168031106	chr2:168031106:C:T	rs114744687	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr2	168031113	168031114	chr2:168031114:C:T	rs142319308	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	168146962	168146963	chr2:168146963:C:T	rs925845	C	T	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr2	168233687	168233688	chr2:168233688:C:T	rs10181180	C	T	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	168663120	168663121	chr2:168663121:C:T	rs4668094	C	T	t	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	168664221	168664222	chr2:168664222:G:C	rs1863146	G	C	g	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr2	168692397	168692398	chr2:168692398:T:C	rs62174419	T	C	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	168853647	168853648	chr2:168853648:C:T	rs72883292	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr2	168912536	168912537	chr2:168912537:T:C	rs1879696	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	169069350	169069351	chr2:169069351:A:G	rs2287611	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	169643503	169643504	chr2:169643504:T:A	rs78239812	T	A	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr2	170017698	170017699	chr2:170017699:A:T	rs10497355	A	T	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr2	170073369	170073370	chr2:170073370:G:A	rs10202446	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	170123453	170123454	chr2:170123454:T:C	rs138827582	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	170397211	170397212	chr2:170397212:C:A	rs7579463	C	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr2	170973496	170973497	chr2:170973497:A:C	rs148188964	A	C	A	Sox3.mouse_HMG_3	2	1	-	0.21317987319181397	-6.53580008867979	GGTGAATGTCGTTCCAG
chr2	170973516	170973517	chr2:170973517:G:T	chr2:170973517:G:T	G	T	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	171046093	171046094	chr2:171046094:A:T	rs6751462	A	T	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	171046123	171046124	chr2:171046124:C:T	rs75937101	C	T	C	Sox3.mouse_HMG_3	1	1	-	1.2834838231721504	4.383613759609442	CGTGAATGTTACTAATG
chr2	171245294	171245295	chr2:171245295:A:C	rs79824570	A	C	A	Sox3.mouse_HMG_3	11	1	-	2.4937316655667714	1.0592955652709644	TATGAACTATATTCCTC
chr2	171532293	171532294	chr2:171532294:A:G	rs6734372	A	G	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr2	171653016	171653017	chr2:171653017:G:A	rs56095833	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	171674051	171674052	chr2:171674052:C:T	rs149611236	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	172209188	172209189	chr2:172209189:G:A	rs10930533	G	A	A	Sox3.mouse_HMG_3	3	1	+	5.366440948559564	-0.41512393896966704	GCTGAATTCCATTCCTC
chr2	172213417	172213418	chr2:172213418:A:G	rs189877891	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr2	172213426	172213427	chr2:172213427:G:C	rs62168967	G	C	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	172287779	172287780	chr2:172287780:A:C	rs7574709	A	C	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	172405435	172405436	chr2:172405436:G:A	rs114982173	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr2	172429159	172429160	chr2:172429160:C:T	rs545336866	C	T	C	Sox3.mouse_HMG_3	0	1	+	6.080012376008727	7.534883021345591	CCTGAATTTTAGTCAGT
chr2	172457699	172457700	chr2:172457700:G:C	rs17676190	G	C	G	Sox3.mouse_HMG_3	11	1	+	4.607304188181145	-0.04287053762499271	GAGGAGTGGTAGTCATG
chr2	172739934	172739935	chr2:172739935:G:A	rs13000099	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	173014299	173014300	chr2:173014300:G:A	rs73017529	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr2	173044548	173044549	chr2:173044549:G:A	rs1551248	G	A	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr2	173054756	173054757	chr2:173054757:G:A	rs10497403	G	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr2	173188061	173188062	chr2:173188062:G:A	rs79481595	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	173188094	173188095	chr2:173188095:A:G	rs191341604	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	173252828	173252829	chr2:173252829:C:T	rs78766141	C	T	T	Sox3.mouse_HMG_3	8	1	-	1.6097360419068674	0.9866193947290542	TATGATTGGCAGCCAGA
chr2	173435870	173435871	chr2:173435871:G:A	rs11887373	G	A	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	173544776	173544777	chr2:173544777:C:T	rs73028856	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr2	173573233	173573234	chr2:173573234:C:T	rs12619702	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	173832743	173832744	chr2:173832744:G:A	rs6433440	G	A	A	Sox3.mouse_HMG_3	16	1	-	5.69363549806506	6.560562237537339	AGGGAATTGCATTCATC
chr2	173944231	173944232	chr2:173944232:C:T	rs72911197	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	174036852	174036853	chr2:174036853:T:A	rs116191258	T	A	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	174112104	174112105	chr2:174112105:T:C	rs77345174	T	C	T	Sox3.mouse_HMG_3	14	1	-	7.718210864248547	1.3362646978216366	TATGAATTTCATTTAGG
chr2	174341541	174341542	chr2:174341542:T:C	rs905903895	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	174382971	174382972	chr2:174382972:T:C	rs6743248	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr2	174527241	174527242	chr2:174527242:G:T	rs1367223	G	T	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	174671803	174671804	chr2:174671804:T:C	rs150989579	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	174701240	174701241	chr2:174701241:G:A	rs10930682	G	A	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	175057595	175057596	chr2:175057596:C:G	rs2772248	C	G	c	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr2	175057597	175057598	chr2:175057598:A:C	rs2541059	A	C	a	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	175364193	175364194	chr2:175364194:A:T	rs6757657	A	T	A	Sox3.mouse_HMG_3	11	1	-	3.7446556015463575	-2.3399552245555864	ACTAAATTCCATTCAAT
chr2	175432115	175432116	chr2:175432116:A:G	rs2461778	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr2	175575987	175575988	chr2:175575988:A:C	rs4075842	A	C	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	176019588	176019589	chr2:176019589:T:C	rs847168	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr2	176455804	176455805	chr2:176455805:C:T	rs77205885	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr2	176550003	176550004	chr2:176550004:T:C	rs2922333	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	176561717	176561718	chr2:176561718:C:G	rs6729822	C	G	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	176626869	176626870	chr2:176626870:C:T	rs79570194	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr2	176893888	176893889	chr2:176893889:C:G	rs16864666	C	G	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	176961142	176961143	chr2:176961143:T:A	rs78744523	T	A	T	Sox3.mouse_HMG_3	6	1	+	8.592599361573052	1.8415478763915831	AATGAATTGCAGTAATT
chr2	177261264	177261265	chr2:177261265:G:A	rs77992884	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	177475041	177475042	chr2:177475042:C:G	rs78321479	C	G	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	177495346	177495347	chr2:177495347:G:A	rs17326999	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	177536559	177536560	chr2:177536560:T:C	rs7606235	T	C	T	Sox3.mouse_HMG_3	15	1	+	6.791698788882515	2.077305377167447	GCTGAATCATAGTCATG
chr2	177556377	177556378	chr2:177556378:A:G	rs4893962	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	177556393	177556394	chr2:177556394:C:T	rs1485866411	C	T	C	Sox3.mouse_HMG_3	8	1	+	2.5219227486247853	2.2598030037086794	GAAGAATTCCATTTAGG
chr2	177808961	177808962	chr2:177808962:A:G	rs13004037	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr2	178006851	178006852	chr2:178006852:A:G	rs71423539	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr2	178327956	178327957	chr2:178327957:A:C	rs76724983	A	C	C	Sox3.mouse_HMG_3	4	1	+	3.51498471341477	-3.2355567947046158	AATGAATTTTAAACATT
chr2	178414746	178414747	chr2:178414747:A:G	rs187903709	A	G	A	Sox3.mouse_HMG_3	14	1	+	6.319861438693192	-0.0620847277337192	AATGGATGGCAGTCAGT
chr2	178414762	178414763	chr2:178414763:G:A	rs193010018	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	178920655	178920656	chr2:178920656:T:C	rs4894064	T	C	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr2	179410643	179410644	chr2:179410644:T:A	rs13410126	T	A	T	Sox3.mouse_HMG_3	8	1	-	2.945603332037181	2.8638175656209564	CATGAATGATATCGATT
chr2	179428785	179428786	chr2:179428786:A:G	rs7579684	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	179428789	179428790	chr2:179428790:T:A	rs13008972	T	A	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	179575084	179575085	chr2:179575085:A:G	rs1515306	A	G	A	Sox3.mouse_HMG_3	0	1	+	2.1609058444687204	2.9861897456150652	AATGACTGCTACTCAGA
chr2	179814335	179814336	chr2:179814336:G:T	rs16867017	G	T	G	Sox3.mouse_HMG_3	2	1	-	0.4902192247387194	1.3687696286300277	AGCGAATGACAGCCATG
chr2	179975065	179975066	chr2:179975066:T:A	rs12693216	T	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	180040973	180040974	chr2:180040974:G:A	rs2090179	G	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr2	180040977	180040978	chr2:180040978:C:T	rs114925077	C	T	C	Sox3.mouse_HMG_3	3	1	+	1.607797758831704	1.4507940100220396	TTTCGATTCCATTCATG
chr2	180191864	180191865	chr2:180191865:A:G	rs6433834	A	G	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	180291304	180291305	chr2:180291305:T:A	rs2679329	T	A	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	180370698	180370699	chr2:180370699:T:G	rs6759225	T	G	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	180370700	180370701	chr2:180370701:C:T	chr2:180370701:C:T	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr2	180521576	180521577	chr2:180521577:C:A	rs151203191	C	A	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr2	180577645	180577646	chr2:180577646:C:T	rs17603622	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	180577647	180577648	chr2:180577648:T:C	rs115828958	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	180708149	180708150	chr2:180708150:C:G	rs149468637	C	G	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	180923420	180923421	chr2:180923421:A:G	rs62178244	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	180979453	180979454	chr2:180979454:T:C	rs10168243	T	C	T	Sox3.mouse_HMG_3	15	1	-	6.441352969865852	5.582571623009431	TGAGAATGGCAGTCAAA
chr2	180992020	180992021	chr2:180992021:G:A	rs73037078	G	A	G	Sox3.mouse_HMG_3	9	1	-	1.8017886917750954	1.8094253687668413	AAGTAATTTCAGTCATG
chr2	181035894	181035895	chr2:181035895:C:G	rs12614444	C	G	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	181105203	181105204	chr2:181105204:T:G	rs908733	T	G	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	181372042	181372043	chr2:181372043:C:T	rs79356370	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr2	181372377	181372378	chr2:181372378:T:A	rs6724378	T	A	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	181561146	181561147	chr2:181561147:C:T	rs113255116	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	182001941	182001942	chr2:182001942:C:T	rs12623537	C	T	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	182435918	182435919	chr2:182435919:A:G	rs10207132	A	G	A	Sox3.mouse_HMG_3	10	1	+	3.1751686707090596	-3.432781970831738	AATCAATGTCAGTAATG
chr2	182445606	182445607	chr2:182445607:A:G	rs1560371	A	G	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr2	182477997	182477998	chr2:182477998:G:A	rs10206152	G	A	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	182504051	182504052	chr2:182504052:T:C	rs10931022	T	C	T	Sox3.mouse_HMG_3	16	1	-	8.094365991070662	8.130306447523187	AATGAGTGTCATTCAGA
chr2	182855069	182855070	chr2:182855070:T:C	rs151314344	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr2	183001324	183001325	chr2:183001325:A:G	chr2:183001325:A:G	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr2	183012612	183012613	chr2:183012613:C:T	rs72888459	C	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr2	183197883	183197884	chr2:183197884:C:T	rs72898525	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	183487537	183487538	chr2:183487538:A:G	rs34351434	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	184564680	184564681	chr2:184564681:A:G	rs141615859	A	G	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr2	184655053	184655054	chr2:184655054:T:G	chr2:184655054:T:G	T	G	T	Sox3.mouse_HMG_3	12	1	+	4.671423245736958	-1.7096516005849516	AGTGAATTGTATTCTAT
chr2	184784827	184784828	chr2:184784828:T:C	rs1317210	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	185222290	185222291	chr2:185222291:G:T	rs10931162	G	T	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr2	185223673	185223674	chr2:185223674:G:T	rs11683056	G	T	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	185332403	185332404	chr2:185332404:G:A	rs1320225422	G	A	G	Sox3.mouse_HMG_3	12	1	+	2.3028636277950225	2.5711276143897024	GCTGGATGGTATGCATA
chr2	185583222	185583223	chr2:185583223:C:T	rs368280434	C	T	C	Sox3.mouse_HMG_3	13	1	+	5.06477341459493	-1.5424871958670905	TTTGGATGGTAGTCAGA
chr2	186131453	186131454	chr2:186131454:C:G	rs10189763	C	G	C	Sox3.mouse_HMG_3	0	1	-	3.4307055714830623	1.7069140723464438	GATTAATTTCATCCATT
chr2	186131463	186131464	chr2:186131464:G:A	rs10189985	G	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	186310169	186310170	chr2:186310170:T:C	rs7582412	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	186544565	186544566	chr2:186544566:C:T	rs116335643	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	186702062	186702063	chr2:186702063:C:G	rs2121976	C	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	186702076	186702077	chr2:186702077:G:A	rs12621915	G	A	G	Sox3.mouse_HMG_3	3	1	+	2.1306603021567954	-3.6509045853724356	CATGAAATGCAGTCCTG
chr2	186717000	186717001	chr2:186717001:T:C	rs62196185	T	C	T	Sox3.mouse_HMG_3	10	1	-	1.9836469797422973	-4.624303661798499	CCTGAATTTCATTCTAT
chr2	186842155	186842156	chr2:186842156:T:G	rs10166171	T	G	T	Sox3.mouse_HMG_3	12	1	+	5.302957595355815	-1.0781172509660955	TCTGAATGATGTTCAAA
chr2	186919475	186919476	chr2:186919476:G:A	rs1328655117	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	187028636	187028637	chr2:187028637:A:T	rs3911198	A	T	a	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	187364894	187364895	chr2:187364895:A:T	rs698581	A	T	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	187500325	187500326	chr2:187500326:T:G	rs8176431	T	G	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	187516674	187516675	chr2:187516675:A:G	rs10205380	A	G	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	187516709	187516710	chr2:187516710:G:A	rs73050518	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	187576121	187576122	chr2:187576122:A:T	rs4667175	A	T	T	Sox3.mouse_HMG_3	16	1	-	3.103027122259604	4.2540161820121005	AATGAAATCCATACATT
chr2	187577581	187577582	chr2:187577582:C:G	rs35277838	C	G	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	188070111	188070112	chr2:188070112:A:G	rs11691992	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr2	188070142	188070143	chr2:188070143:A:G	rs11691997	A	G	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	188092912	188092913	chr2:188092913:T:C	rs1439912	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr2	188196623	188196624	chr2:188196624:T:C	rs1439894	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	188295367	188295368	chr2:188295368:A:G	rs529482646	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	188303827	188303828	chr2:188303828:A:T	rs6712056	A	T	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	188611327	188611328	chr2:188611328:G:A	rs13413752	G	A	A	Sox3.mouse_HMG_3	2	1	-	0.8603016335306113	7.466180751761543	GCCGCATTGTATTCATA
chr2	188766479	188766480	chr2:188766480:G:T	rs2138959	G	T	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	188783956	188783957	chr2:188783957:T:C	rs10166484	T	C	C	Sox3.mouse_HMG_3	16	1	-	1.9177983430121273	1.953738799464653	GTTGAATTTTGTCCATA
chr2	188788631	188788632	chr2:188788632:G:A	rs183236548	G	A	G	Sox3.mouse_HMG_3	14	1	-	2.25460382467136	2.25460382467136	TGTGAATGACATTGCTA
chr2	188985046	188985047	chr2:188985047:A:G	rs3106796	A	G	A	Sox3.mouse_HMG_3	5	1	+	0.4857533239904934	-6.00308159808037	AGGGAATGAAAGTCATG
chr2	189010968	189010969	chr2:189010969:T:G	rs3768660	T	G	G	Sox3.mouse_HMG_3	14	1	-	2.7550143516138013	-3.6269318148131093	TATTAATTTTATTTATT
chr2	189082258	189082259	chr2:189082259:A:C	rs56381977	A	C	A	Sox3.mouse_HMG_3	2	1	-	10.068279202198022	3.319299240326419	TATGAATTTCATCCATT
chr2	189082269	189082270	chr2:189082270:T:C	rs56074008	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr2	189097044	189097045	chr2:189097045:C:T	rs72906354	C	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr2	189124576	189124577	chr2:189124577:C:T	rs1515869	C	T	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr2	189147392	189147393	chr2:189147393:G:A	rs78849184	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr2	189281631	189281632	chr2:189281632:T:C	rs140017277	T	C	T	Sox3.mouse_HMG_3	15	1	+	3.543398030398978	-1.1709953813160905	AATGATTGCCAGTAATA
chr2	189362456	189362457	chr2:189362457:G:A	rs13394718	G	A	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr2	189454428	189454429	chr2:189454429:C:T	rs74415056	C	T	T	Sox3.mouse_HMG_3	15	1	-	5.086898096418482	5.945679443274903	TATGAATGTTGGTCAGC
chr2	189454433	189454434	chr2:189454434:C:G	rs77120763	C	G	C	Sox3.mouse_HMG_3	10	1	-	5.086898096418482	4.943797252777809	TATGAATGTTGGTCAGC
chr2	189454461	189454462	chr2:189454462:A:C	rs7419276	A	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	190216291	190216292	chr2:190216292:C:T	rs7569296	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	190540237	190540238	chr2:190540238:G:A	rs4853718	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	190604035	190604036	chr2:190604036:T:C	rs16832765	T	C	T	Sox3.mouse_HMG_3	10	1	-	7.7548936069319705	1.1469429653911738	AGTAAATGACATTCATT
chr2	190717660	190717661	chr2:190717661:G:A	rs1860167	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr2	190810320	190810321	chr2:190810321:A:G	rs6434416	A	G	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	190859205	190859206	chr2:190859206:T:G	rs1921910	T	G	T	Sox3.mouse_HMG_3	15	1	+	4.148107547132411	1.0255167360391697	CCTGAATTCTTTTCATT
chr2	191030475	191030476	chr2:191030476:T:A	rs3024904	T	A	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	191075533	191075534	chr2:191075534:G:A	rs16833239	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr2	191165193	191165194	chr2:191165194:C:T	rs116561122	C	T	C	Sox3.mouse_HMG_3	6	1	+	3.065533794117891	9.673484435658688	TTTGAACGATAGTCAGT
chr2	191166491	191166492	chr2:191166492:T:G	rs143988145	T	G	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr2	191166500	191166501	chr2:191166501:G:T	rs4853550	G	T	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr2	191188979	191188980	chr2:191188980:C:A	rs6744978	C	A	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	191193382	191193383	chr2:191193383:G:T	rs10931488	G	T	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	191385569	191385570	chr2:191385570:G:C	rs35807090	G	C	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	191401278	191401279	chr2:191401279:A:G	rs73060769	A	G	A	Sox3.mouse_HMG_3	15	1	-	5.346865180135841	0.6324717684207726	AAAAAATTTCATTCATA
chr2	191418826	191418827	chr2:191418827:A:G	rs146964552	A	G	A	Sox3.mouse_HMG_3	4	1	+	2.0843579079075933	-4.2984588200864735	TGAGAATTGAATTCATT
chr2	191532464	191532465	chr2:191532465:T:C	rs2203748	T	C	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	191612822	191612823	chr2:191612823:C:T	rs529128720	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	191705972	191705973	chr2:191705973:T:G	rs6722563	T	G	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr2	191831528	191831529	chr2:191831529:A:G	rs7585866	A	G	A	Sox3.mouse_HMG_3	14	1	+	9.297693665550785	2.915747499123875	CAGGAATTATATTCATA
chr2	192885745	192885746	chr2:192885746:G:A	rs16835017	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr2	192885787	192885788	chr2:192885788:G:A	rs1010731223	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	193241011	193241012	chr2:193241012:G:T	rs12991514	G	T	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	193382933	193382934	chr2:193382934:C:T	rs6708828	C	T	T	Sox3.mouse_HMG_3	8	1	+	1.6367914988048053	1.3746717538886994	CCTGAAGTCTAGTCAAG
chr2	193487368	193487369	chr2:193487369:C:A	rs74592380	C	A	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr2	194270775	194270776	chr2:194270776:T:G	rs28431788	T	G	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	195107153	195107154	chr2:195107154:C:T	rs10171891	C	T	C	Sox3.mouse_HMG_3	7	1	-	1.4451298860160051	-5.1084188286417245	TGTGAATGCTTCTCATT
chr2	195318682	195318683	chr2:195318683:A:G	rs16839391	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.9657683324741788	-4.5230665895966835	GCAGCATGATATTCATA
chr2	195394791	195394792	chr2:195394792:T:C	rs80165287	T	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr2	195407464	195407465	chr2:195407465:C:T	chr2:195407465:C:T	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	195536804	195536805	chr2:195536805:A:C	rs10171945	A	C	C	Sox3.mouse_HMG_3	6	1	-	3.0928774498361538	-3.6581740353453167	AAAGAATGACAGTCTTT
chr2	195609275	195609276	chr2:195609276:C:T	rs17179927	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	195800073	195800074	chr2:195800074:G:T	rs80290282	G	T	G	Sox3.mouse_HMG_3	0	1	+	4.39330845583864	4.124387602038886	GTGGAATTGCATTCAGT
chr2	195932403	195932404	chr2:195932404:C:T	rs7563357	C	T	C	Sox3.mouse_HMG_3	6	1	-	2.7593378363352787	2.7593378363352787	CATAAAGGGTATTCAAG
chr2	196205699	196205700	chr2:196205700:G:A	rs6748485	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr2	196205717	196205718	chr2:196205718:G:T	rs1455815	G	T	T	Sox3.mouse_HMG_3	9	1	-	2.5180438440946022	-3.536174780413716	TCTGAATTACAATCACA
chr2	196211400	196211401	chr2:196211401:C:T	rs551661858	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr2	196211411	196211412	chr2:196211412:G:A	chr2:196211412:G:A	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	196260423	196260424	chr2:196260424:T:C	rs3762474	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr2	196260949	196260950	chr2:196260950:G:T	rs190665634	G	T	G	Sox3.mouse_HMG_3	0	1	+	5.658724509793773	5.389803655994019	GATGGATGACATTTATG
chr2	196759056	196759057	chr2:196759057:C:T	rs6434883	C	T	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	196927958	196927959	chr2:196927959:C:T	rs79439497	C	T	C	Sox3.mouse_HMG_3	3	1	-	1.6261211235249624	-4.155443764004268	TATGTATTGTAGCCAAA
chr2	197079922	197079923	chr2:197079923:T:A	rs10931772	T	A	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr2	197125220	197125221	chr2:197125221:T:C	rs2579395	T	C	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr2	197209058	197209059	chr2:197209059:C:T	rs2697309	C	T	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	197297278	197297279	chr2:197297279:T:C	rs7593063	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	197627591	197627592	chr2:197627592:T:G	rs72916919	T	G	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	198056879	198056880	chr2:198056880:C:A	rs11679484	C	A	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	198143781	198143782	chr2:198143782:C:T	rs11674075	C	T	C	Sox3.mouse_HMG_3	8	1	+	3.7935294171585645	3.5314096722424586	GATGACTGCTATTCCTC
chr2	198616018	198616019	chr2:198616019:G:T	rs35981328	G	T	G	Sox3.mouse_HMG_3	15	1	+	5.447963689750144	8.570554500843386	AATAAATTACAGTCAGT
chr2	198706397	198706398	chr2:198706398:G:A	rs116783381	G	A	G	Sox3.mouse_HMG_3	9	1	-	2.31247993950268	2.320116616494426	CCTGATTTCCATTCAGA
chr2	198881259	198881260	chr2:198881260:A:G	rs4674268	A	G	G	Sox3.mouse_HMG_3	15	1	+	1.7006679773481996	0.8418866304917791	TATGAATGCTTGTCTAA
chr2	199582307	199582308	chr2:199582308:C:A	rs13020883	C	A	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr2	199799146	199799147	chr2:199799147:A:G	rs77624902	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	200139113	200139114	chr2:200139114:A:C	rs1106399	A	C	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	200158103	200158104	chr2:200158104:C:T	rs75000539	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	200239509	200239510	chr2:200239510:A:C	rs1035290526	A	C	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr2	200496964	200496965	chr2:200496965:G:T	rs12693915	G	T	g	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	200731586	200731587	chr2:200731587:G:C	rs114407623	G	C	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	200764827	200764828	chr2:200764828:A:G	rs41422845	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr2	200777255	200777256	chr2:200777256:A:G	rs16834518	A	G	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr2	200861629	200861630	chr2:200861630:C:T	rs116395428	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	201630756	201630757	chr2:201630757:T:C	rs1209409	T	C	C	Sox3.mouse_HMG_3	16	1	-	4.92560807476955	4.961548531222076	TATGACTTCTAGTCACA
chr2	201642390	201642391	chr2:201642391:T:C	rs79383733	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr2	201950806	201950807	chr2:201950807:G:A	rs7562987	G	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	201974263	201974264	chr2:201974264:A:G	rs60674917	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	201974920	201974921	chr2:201974921:G:A	rs17385923	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr2	202042329	202042330	chr2:202042330:C:T	rs13026106	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	202678403	202678404	chr2:202678404:T:G	chr2:202678404:T:G	T	G	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	202678414	202678415	chr2:202678415:G:A	chr2:202678415:G:A	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	202703061	202703062	chr2:202703062:G:A	rs371399542	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	203017834	203017835	chr2:203017835:C:T	rs10188105	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	203342039	203342040	chr2:203342040:A:G	chr2:203342040:A:G	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr2	203637014	203637015	chr2:203637015:G:T	rs28545417	G	T	T	Sox3.mouse_HMG_3	7	1	+	0.6732516957283867	-0.1767812465016847	GGTGGATGACATCCAAA
chr2	203744091	203744092	chr2:203744092:G:C	rs79741367	G	C	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	203809263	203809264	chr2:203809264:T:C	rs189492580	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr2	204239929	204239930	chr2:204239930:G:A	rs10427204	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	204335285	204335286	chr2:204335286:A:T	rs4675451	A	T	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr2	204483966	204483967	chr2:204483967:G:A	rs139687491	G	A	G	Sox3.mouse_HMG_3	0	1	-	2.179607854741225	3.6344785000780897	CCTGACTTGCAGTCAAA
chr2	204894143	204894144	chr2:204894144:G:A	rs12990232	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	205337471	205337472	chr2:205337472:C:T	rs13011886	C	T	C	Sox3.mouse_HMG_3	11	1	-	5.480869259657084	0.8306945338509458	AATGATTTACAGTCAAT
chr2	205391327	205391328	chr2:205391328:A:G	rs116710310	A	G	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr2	205715100	205715101	chr2:205715101:G:A	rs2110875	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr2	205862977	205862978	chr2:205862978:T:G	rs10187464	T	G	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	206164573	206164574	chr2:206164574:T:C	rs2058706	T	C	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	206380058	206380059	chr2:206380059:A:G	rs972540	A	G	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr2	206380102	206380103	chr2:206380103:A:G	rs972539	A	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr2	206693988	206693989	chr2:206693989:T:C	rs6760991	T	C	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr2	206729295	206729296	chr2:206729296:C:T	rs10175228	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr2	207231745	207231746	chr2:207231746:C:T	rs13420163	C	T	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr2	207296771	207296772	chr2:207296772:T:C	rs73985541	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr2	207399073	207399074	chr2:207399074:T:C	rs4377319	T	C	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr2	207621800	207621801	chr2:207621801:C:G	rs186405977	C	G	C	Sox3.mouse_HMG_3	5	1	-	1.4100468607985475	1.291441118390701	GGTGAGTGTCATGCATT
chr2	207621814	207621815	chr2:207621815:C:G	rs147079964	C	G	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr2	207679289	207679290	chr2:207679290:C:T	rs13003166	C	T	C	Sox3.mouse_HMG_3	0	1	+	2.7429377826374077	4.197808427974272	CACTAATTCCATTCATG
chr2	207770159	207770160	chr2:207770160:A:C	rs984245330	A	C	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	207848759	207848760	chr2:207848760:C:A	rs73062866	C	A	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	207898426	207898427	chr2:207898427:A:G	rs190431139	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	208096699	208096700	chr2:208096700:C:A	rs6713275	C	A	c	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr2	208118813	208118814	chr2:208118814:T:A	rs6435414	T	A	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	208174784	208174785	chr2:208174785:G:T	rs76031922	G	T	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	208319509	208319510	chr2:208319510:A:G	rs13399978	A	G	A	Sox3.mouse_HMG_3	8	1	+	2.3575765972090528	2.980693244386866	CATGAATGACTGTCTTG
chr2	208319513	208319514	chr2:208319514:T:C	rs13388119	T	C	T	Sox3.mouse_HMG_3	12	1	+	2.3575765972090528	-3.835276970191713	CATGAATGACTGTCTTG
chr2	208397713	208397714	chr2:208397714:G:A	rs115357300	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	208820214	208820215	chr2:208820215:T:C	rs10167664	T	C	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr2	208985249	208985250	chr2:208985250:C:G	rs16842199	C	G	C	Sox3.mouse_HMG_3	3	1	-	4.489969761588479	-2.2595209741165703	AAAGAATGCTATTTATT
chr2	209069070	209069071	chr2:209069071:T:C	rs4673440	T	C	C	Sox3.mouse_HMG_3	10	1	-	1.592577289929817	-5.01537335161098	GGTGAATTTCATGGATA
chr2	209476759	209476760	chr2:209476760:G:A	rs116072655	G	A	G	Sox3.mouse_HMG_3	2	1	-	2.51795981609719	9.12383893432812	GACGGATTATATTCAAA
chr2	209496592	209496593	chr2:209496593:A:G	rs114803681	A	G	A	Sox3.mouse_HMG_3	12	1	-	2.9003835685427	-3.292469998858066	AAGGAAAGGTATTCATC
chr2	209530997	209530998	chr2:209530998:T:C	rs6752348	T	C	T	Sox3.mouse_HMG_3	10	1	-	6.683615296930982	0.07566465539018485	TTTGTATTTCATTCATT
chr2	209638523	209638524	chr2:209638524:G:A	rs1509473	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr2	210445505	210445506	chr2:210445506:A:G	rs143933409	A	G	A	Sox3.mouse_HMG_3	16	1	-	7.670709688486118	6.80378294901384	AATGAATTTTAGTGATT
chr2	210445529	210445530	chr2:210445530:T:C	chr2:210445530:T:C	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	211145768	211145769	chr2:211145769:A:C	rs11901164	A	C	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	211205201	211205202	chr2:211205202:C:T	rs4673601	C	T	T	Sox3.mouse_HMG_3	11	1	-	3.245542181571759	-1.4046325442343788	GTTGTATGTCAGTCAGT
chr2	211294176	211294177	chr2:211294177:A:G	rs17692625	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr2	211310378	211310379	chr2:211310379:C:G	rs6727723	C	G	C	Sox3.mouse_HMG_3	6	1	-	4.313793168793555	4.456894012434228	GAAGAAGTCCATTCATT
chr2	211352128	211352129	chr2:211352129:A:C	rs150416243	A	C	A	Sox3.mouse_HMG_3	5	1	+	4.932203357086134	-1.6752373073925773	TTTGAATGATTGTCAAA
chr2	211853418	211853419	chr2:211853419:T:C	rs11687449	T	C	T	Sox3.mouse_HMG_3	2	1	+	2.863137440252415	-3.7427416779785148	TATGACTTGCATTAAAA
chr2	212015688	212015689	chr2:212015689:A:G	rs73083319	A	G	A	Sox3.mouse_HMG_3	1	1	-	5.249652082742061	4.042869377075262	ATTGAGTGATATTCAGG
chr2	212159626	212159627	chr2:212159627:G:A	rs2888052	G	A	G	Sox3.mouse_HMG_3	3	1	+	3.284311161229601	-2.4972537262996295	AATGAATTGTTTTCTTT
chr2	212168749	212168750	chr2:212168750:G:T	rs1402765	G	T	G	Sox3.mouse_HMG_3	15	1	+	2.1683107632995737	5.290901574392815	AATAAAGGACATTCAGG
chr2	212249398	212249399	chr2:212249399:T:C	rs28539084	T	C	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	212516914	212516915	chr2:212516915:T:C	rs7606241	T	C	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr2	212640281	212640282	chr2:212640282:C:T	rs11676119	C	T	C	Sox3.mouse_HMG_3	8	1	-	4.025882714220856	3.4027660670430433	GGAGAATGGCATTAATA
chr2	212818155	212818156	chr2:212818156:C:G	rs76287803	C	G	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr2	212818364	212818365	chr2:212818365:C:T	rs4233988	C	T	T	Sox3.mouse_HMG_3	11	1	+	2.5349056335738345	8.61951645967578	AATGAATTAAACTCAAA
chr2	212898416	212898417	chr2:212898417:C:T	rs62186482	C	T	c	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	213014549	213014550	chr2:213014550:A:G	rs1384397	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	213187712	213187713	chr2:213187713:A:C	rs56116117	A	C	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr2	213247033	213247034	chr2:213247034:C:A	chr2:213247034:C:A	C	A	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	213251821	213251822	chr2:213251822:C:T	rs1196598536	C	T	C	Sox3.mouse_HMG_3	4	1	-	0.3864878703769208	6.769304598370987	CTTGGATGGTAGTCCTG
chr2	213261472	213261473	chr2:213261473:A:G	rs10084389	A	G	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr2	213266591	213266592	chr2:213266592:T:C	rs539705845	T	C	T	Sox3.mouse_HMG_3	1	1	+	5.1018185150265465	3.8950358093597455	CTGGAATTCCAGTCATG
chr2	213941350	213941351	chr2:213941351:T:C	rs953133	T	C	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr2	213941412	213941413	chr2:213941413:A:T	rs953134	A	T	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr2	213981288	213981289	chr2:213981289:G:A	rs112543422	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr2	214518764	214518765	chr2:214518765:C:T	rs11678147	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr2	214593908	214593909	chr2:214593909:T:C	rs7425848	T	C	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	215438472	215438473	chr2:215438473:G:A	rs767398749	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	215526767	215526768	chr2:215526768:T:C	rs1080594	T	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	215540919	215540920	chr2:215540920:A:G	rs73073815	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	215554673	215554674	chr2:215554674:G:A	rs16854289	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr2	215737320	215737321	chr2:215737321:T:C	rs7577109	T	C	C	Sox3.mouse_HMG_3	2	1	+	9.860787904633296	3.254908786402366	GATGAATTACTTTCATT
chr2	216213703	216213704	chr2:216213704:G:A	rs207892	G	A	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	216362583	216362584	chr2:216362584:C:T	rs1510837	C	T	C	Sox3.mouse_HMG_3	3	1	-	1.813618448272836	-3.9679464392563952	AGCGAATTGTACTCATG
chr2	216365754	216365755	chr2:216365755:T:C	rs17551014	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr2	216714581	216714582	chr2:216714582:C:G	rs2024486	C	G	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	217016780	217016781	chr2:217016781:A:G	rs16856821	A	G	A	Sox3.mouse_HMG_3	15	1	-	3.6231395092670953	-1.0912539024479728	AATGCCTTATATTCATG
chr2	217104052	217104053	chr2:217104053:A:C	chr2:217104053:A:C	A	C	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr2	217256886	217256887	chr2:217256887:C:T	rs2553027	C	T	C	Sox3.mouse_HMG_3	16	1	-	3.399875069918778	3.3639346134662524	AATGAATGACAGTTTTG
chr2	217367428	217367429	chr2:217367429:G:A	rs149919396	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	217479323	217479324	chr2:217479324:C:T	rs561625934	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr2	217555430	217555431	chr2:217555431:T:A	rs77736243	T	A	A	Sox3.mouse_HMG_3	10	1	-	4.230470514798571	-2.5205809703828996	GATAATTTATATTCATT
chr2	217568440	217568441	chr2:217568441:G:A	rs7596630	G	A	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	217625581	217625582	chr2:217625582:C:T	rs73085116	C	T	C	Sox3.mouse_HMG_3	3	1	-	2.7777900247449736	-3.003774862784258	GATGAAAGTGAGTCAAG
chr2	217745529	217745530	chr2:217745530:G:A	rs10804262	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr2	217750967	217750968	chr2:217750968:G:C	rs73072322	G	C	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr2	217820903	217820904	chr2:217820904:T:C	rs2571434	T	C	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	217830962	217830963	chr2:217830963:T:C	rs2571440	T	C	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	217847725	217847726	chr2:217847726:T:G	rs141901890	T	G	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	217849606	217849607	chr2:217849607:A:T	rs10170040	A	T	A	Sox3.mouse_HMG_3	6	1	-	4.804108857026078	-1.9469426281553934	AATTAATGATACTCATA
chr2	217849962	217849963	chr2:217849963:A:C	rs3791978	A	C	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	217918882	217918883	chr2:217918883:G:A	rs10208644	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr2	217918884	217918885	chr2:217918885:A:G	rs10184821	A	G	G	Sox3.mouse_HMG_3	15	1	-	2.330820610241293	-2.383572801473775	GTGGAGTGTTATTCATA
chr2	218018462	218018463	chr2:218018463:C:T	rs7580997	C	T	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr2	218294803	218294804	chr2:218294804:T:C	rs4672883	T	C	T	Sox3.mouse_HMG_3	6	1	+	7.609555754719321	1.001605113178522	CATGAATTCCATTCCAG
chr2	218478715	218478716	chr2:218478716:T:C	rs766817588	T	C	T	Sox3.mouse_HMG_3	14	1	-	4.083123042781161	-2.298823123645749	GATGAATATTTTTCATT
chr2	218578993	218578994	chr2:218578994:A:G	rs3770216	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr2	219109751	219109752	chr2:219109752:C:T	rs74972314	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	219199647	219199648	chr2:219199648:C:T	rs149163833	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	219662755	219662756	chr2:219662756:T:G	rs556143726	T	G	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr2	219691747	219691748	chr2:219691748:C:T	rs79610995	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	219702021	219702022	chr2:219702022:A:G	rs6737920	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr2	219707347	219707348	chr2:219707348:A:G	rs667964	A	G	G	Sox3.mouse_HMG_3	0	1	+	1.2483575826956275	2.0736414838419712	AAGGAAAGGCAGTCAAG
chr2	219784274	219784275	chr2:219784275:T:A	rs6436167	T	A	A	Sox3.mouse_HMG_3	11	1	+	0.5784542253677925	-5.506156600734154	GGAGAAGGGTATTCAGG
chr2	219875827	219875828	chr2:219875828:T:C	rs140669132	T	C	T	Sox3.mouse_HMG_3	4	1	+	1.9844358713715289	1.8413350277308556	AATGTATCCCATTCAGA
chr2	219875858	219875859	chr2:219875859:C:G	rs72953870	C	G	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr2	219906588	219906589	chr2:219906589:A:G	rs4674472	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	219951204	219951205	chr2:219951205:C:T	rs9789637	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr2	219954459	219954460	chr2:219954460:T:C	rs7562728	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr2	219962061	219962062	chr2:219962062:T:A	rs4281889	T	A	A	Sox3.mouse_HMG_3	14	1	-	5.792242346902645	-0.5897038195242652	ACTGAATGCTGGTCATG
chr2	219988630	219988631	chr2:219988631:T:C	rs11674441	T	C	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr2	220105416	220105417	chr2:220105417:A:G	rs12992951	A	G	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	220337951	220337952	chr2:220337952:C:T	rs1454543	C	T	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	220496579	220496580	chr2:220496580:C:A	rs9789718	C	A	C	Sox3.mouse_HMG_3	9	1	+	4.404336299907082	-1.6498823246012373	GATGATTTACCTTCATA
chr2	220812108	220812109	chr2:220812109:T:C	chr2:220812109:T:C	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	220881510	220881511	chr2:220881511:C:T	rs62188382	C	T	C	Sox3.mouse_HMG_3	8	1	+	2.968425570028914	2.7063058251128083	AATGAATGCTATTTTTC
chr2	221372926	221372927	chr2:221372927:G:A	rs62178586	G	A	G	Sox3.mouse_HMG_3	1	1	+	0.7615116769627659	3.861641613400057	GGCGCATGGCATTCATC
chr2	221372928	221372929	chr2:221372929:G:A	rs116947520	G	A	G	Sox3.mouse_HMG_3	3	1	+	0.7615116769627659	-5.020053210566466	GGCGCATGGCATTCATC
chr2	221435206	221435207	chr2:221435207:G:A	rs3770201	G	A	G	Sox3.mouse_HMG_3	1	1	+	5.835174795457952	8.935304731895247	AGTGTATTGCATTCATC
chr2	221435235	221435236	chr2:221435236:G:A	rs3770200	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	221608955	221608956	chr2:221608956:G:C	rs2710520	G	C	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	222000306	222000307	chr2:222000307:A:G	rs547385151	A	G	A	Sox3.mouse_HMG_3	16	1	-	1.305219728392112	0.43829298891983304	CCTTAATTGCATTCAGT
chr2	222085957	222085958	chr2:222085958:G:A	rs348998	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	222204905	222204906	chr2:222204906:T:C	rs13017777	T	C	T	Sox3.mouse_HMG_3	11	1	+	5.520681667710446	-0.5639291583914992	GCAGAATTTTATTCAAA
chr2	222479974	222479975	chr2:222479975:C:A	rs13032598	C	A	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	222505131	222505132	chr2:222505132:G:C	rs10211148	G	C	G	Sox3.mouse_HMG_3	7	1	+	1.4551978239531105	-4.79824629825428	AGTGAGAGATATTCATA
chr2	222694170	222694171	chr2:222694171:G:A	rs7592038	G	A	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr2	222702296	222702297	chr2:222702297:A:G	rs951997	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.049715608345794	-4.558235033195004	TATGAACGATATTGAGG
chr2	222702306	222702307	chr2:222702307:C:T	rs1374536	C	T	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	222819863	222819864	chr2:222819864:G:A	rs114297206	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	222975687	222975688	chr2:222975688:T:C	rs567540303	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	223009170	223009171	chr2:223009171:C:T	rs59293542	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr2	223009187	223009188	chr2:223009188:G:T	rs57197851	G	T	G	Sox3.mouse_HMG_3	13	1	-	5.399238270815897	-0.9833984031614781	ATTGAATGTCTGTCATT
chr2	223114376	223114377	chr2:223114377:C:T	rs6746263	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr2	223127009	223127010	chr2:223127010:C:T	rs4449122	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	223148852	223148853	chr2:223148853:G:T	rs7590916	G	T	G	Sox3.mouse_HMG_3	8	1	-	2.833021253992766	2.6526872754928847	AATGGAATCCATTCATT
chr2	223204117	223204118	chr2:223204118:G:C	rs4674760	G	C	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr2	223469318	223469319	chr2:223469319:T:G	rs888890246	T	G	T	Sox3.mouse_HMG_3	15	1	+	4.358490989943383	1.2359001788501416	GATGATTTTCTTTCATG
chr2	223525782	223525783	chr2:223525783:C:T	rs2396006	C	T	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	223525790	223525791	chr2:223525791:G:A	rs79055005	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr2	223642663	223642664	chr2:223642664:G:A	rs75403103	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr2	223747630	223747631	chr2:223747631:T:C	rs649569	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	223747635	223747636	chr2:223747636:G:A	rs76924583	G	A	G	Sox3.mouse_HMG_3	1	1	+	4.397634145941646	7.497764082378939	CGTGAATGGTATTGAAT
chr2	223815257	223815258	chr2:223815258:A:G	rs13382611	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr2	223830923	223830924	chr2:223830924:C:T	rs6436439	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	223833006	223833007	chr2:223833007:C:T	rs112763884	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	223846582	223846583	chr2:223846583:A:G	rs73991888	A	G	G	Sox3.mouse_HMG_3	6	1	+	0.8358893737465931	0.8358893737465931	GATGAAATGCAATCACA
chr2	224219855	224219856	chr2:224219856:T:G	rs16865681	T	G	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr2	224261564	224261565	chr2:224261565:T:C	rs10174215	T	C	C	Sox3.mouse_HMG_3	11	1	+	2.0503506263126288	-4.0342601997893155	AAGGAAATGTATTCATC
chr2	224347712	224347713	chr2:224347713:G:T	rs189223200	G	T	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	224589491	224589492	chr2:224589492:T:C	rs72974267	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	224870296	224870297	chr2:224870297:C:A	rs116691373	C	A	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr2	225272431	225272432	chr2:225272432:A:T	rs60447174	A	T	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr2	225283362	225283363	chr2:225283363:G:A	rs72966663	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr2	225296630	225296631	chr2:225296631:G:C	rs11887391	G	C	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr2	225296916	225296917	chr2:225296917:G:A	rs2120346	G	A	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr2	225399484	225399485	chr2:225399485:G:A	rs77596847	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr2	225452646	225452647	chr2:225452647:A:T	rs76264800	A	T	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	225468499	225468500	chr2:225468500:G:A	rs13396211	G	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	225893445	225893446	chr2:225893446:G:C	rs11887892	G	C	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr2	226031972	226031973	chr2:226031973:A:G	rs541288727	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr2	226248037	226248038	chr2:226248038:C:T	rs2943654	C	T	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr2	226415152	226415153	chr2:226415153:C:T	rs7582958	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	226651211	226651212	chr2:226651212:C:T	rs145719688	C	T	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	226656063	226656064	chr2:226656064:G:A	rs151310358	G	A	G	Sox3.mouse_HMG_3	8	1	+	1.4653323039595987	0.8422156567817847	TATGATTTGCAGTCCAG
chr2	226841065	226841066	chr2:226841066:G:A	rs1019817	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	227000159	227000160	chr2:227000160:A:G	rs10189579	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr2	227058241	227058242	chr2:227058242:G:C	rs6436647	G	C	G	Sox3.mouse_HMG_3	8	1	+	1.1510032479375245	0.7082205792595934	GCTGGATGGTATTCCTT
chr2	227058256	227058257	chr2:227058257:A:G	rs6734191	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	227129979	227129980	chr2:227129980:C:A	chr2:227129980:C:A	C	A	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	227228257	227228258	chr2:227228258:C:T	rs7608142	C	T	C	Sox3.mouse_HMG_3	7	1	-	0.6440087404075254	-5.909539974250202	GAAGAATGACACCCATG
chr2	227270914	227270915	chr2:227270915:C:T	rs28381984	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	227362603	227362604	chr2:227362604:T:C	rs74723467	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	227392849	227392850	chr2:227392850:A:C	rs34185810	A	C	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr2	227423354	227423355	chr2:227423355:G:C	rs34493504	G	C	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr2	227464539	227464540	chr2:227464540:G:T	rs34868900	G	T	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	227661383	227661384	chr2:227661384:A:G	rs2396465	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	227890763	227890764	chr2:227890764:T:A	rs1715840	T	A	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	227934079	227934080	chr2:227934080:T:G	rs1721373	T	G	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr2	228443929	228443930	chr2:228443930:G:A	rs2194551	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr2	228443937	228443938	chr2:228443938:G:C	rs58276054	G	C	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	228466020	228466021	chr2:228466021:C:T	rs6725826	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	228594277	228594278	chr2:228594278:G:A	rs79619282	G	A	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr2	228688501	228688502	chr2:228688502:C:G	rs77298506	C	G	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr2	228688504	228688505	chr2:228688505:T:C	rs75027933	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr2	228772189	228772190	chr2:228772190:T:C	rs79726369	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	228799573	228799574	chr2:228799574:T:C	rs776977	T	C	C	Sox3.mouse_HMG_3	0	1	+	2.7471976206053625	1.2923269752684985	TATTTATTTCATTCATT
chr2	228875112	228875113	chr2:228875113:G:T	rs11893007	G	T	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	229135337	229135338	chr2:229135338:A:G	rs10153935	A	G	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	229408589	229408590	chr2:229408590:A:G	chr2:229408590:A:G	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	229419237	229419238	chr2:229419238:A:C	rs6738575	A	C	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr2	229481990	229481991	chr2:229481991:C:A	rs12476610	C	A	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr2	229485362	229485363	chr2:229485363:C:T	rs13384217	C	T	C	Sox3.mouse_HMG_3	16	1	-	1.9515806820658879	1.9156402256133622	GATGCATTTCCTTCAAG
chr2	229974550	229974551	chr2:229974551:T:C	rs35069102	T	C	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	230565261	230565262	chr2:230565262:G:A	rs17354508	G	A	.	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	230583101	230583102	chr2:230583102:C:A	rs74678247	C	A	.	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	230856008	230856009	chr2:230856009:G:A	rs7576607	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr2	230920310	230920311	chr2:230920311:A:G	rs16827668	A	G	A	Sox3.mouse_HMG_3	11	1	-	2.4077390207996245	-3.67687180530232	GGTGAATTCAATGCATA
chr2	230974143	230974144	chr2:230974144:C:T	rs79254452	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr2	231054104	231054105	chr2:231054105:T:C	rs145467221	T	C	T	Sox3.mouse_HMG_3	5	1	-	0.5509106035530302	-5.937924318517833	GGTGAAGGACATCCATC
chr2	231187021	231187022	chr2:231187022:A:T	rs55820201	A	T	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr2	231212361	231212362	chr2:231212362:A:G	rs5018532	A	G	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr2	231227234	231227235	chr2:231227235:C:G	rs6437008	C	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	231356901	231356902	chr2:231356902:C:T	rs61485321	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr2	232280558	232280559	chr2:232280559:A:G	rs3116224	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	232301413	232301414	chr2:232301414:G:A	rs12467271	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	232364611	232364612	chr2:232364612:T:C	rs883160	T	C	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr2	232593968	232593969	chr2:232593969:T:G	rs940666	T	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	232597384	232597385	chr2:232597385:G:A	rs10206657	G	A	G	Sox3.mouse_HMG_3	16	1	+	3.5388382300924546	3.502897773639929	TATGAATGTCATAAAAG
chr2	232974999	232975000	chr2:232975000:A:C	rs75758173	A	C	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	233092542	233092543	chr2:233092543:A:T	rs6756729	A	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr2	233118825	233118826	chr2:233118826:C:T	rs74499005	C	T	C	Sox3.mouse_HMG_3	16	1	-	0.4954724971807092	0.45953204072818354	CATGGATGGCAGACAGG
chr2	233293120	233293121	chr2:233293121:A:G	rs78930461	A	G	A	Sox3.mouse_HMG_3	6	1	-	3.480776915749762	-3.127173725791036	AATGTGTGCTAGTCATG
chr2	233297793	233297794	chr2:233297794:T:C	rs73998351	T	C	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr2	233375752	233375753	chr2:233375753:G:A	rs838708	G	A	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr2	233501560	233501561	chr2:233501561:T:A	rs13405703	T	A	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr2	233702265	233702266	chr2:233702266:A:G	rs17862866	A	G	a	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr2	233807779	233807780	chr2:233807780:G:A	rs11563241	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr2	233832111	233832112	chr2:233832112:A:G	rs213547	A	G	G	Sox3.mouse_HMG_3	1	1	+	1.1888270336845332	-1.911302902752758	GATGAATGACAGCCCAT
chr2	233981746	233981747	chr2:233981747:G:T	rs6708995	G	T	G	Sox3.mouse_HMG_3	3	1	+	2.086121738202067	-4.820372746312646	CATGAATTCTGTTCCTT
chr2	234029273	234029274	chr2:234029274:A:G	rs17864791	A	G	A	Sox3.mouse_HMG_3	11	1	-	3.357611264629809	-2.7269995614721356	GGAGAATGTCATTCCTG
chr2	234286043	234286044	chr2:234286044:C:T	rs6745846	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	234286054	234286055	chr2:234286055:C:G	rs6745850	C	G	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	234486570	234486571	chr2:234486571:C:T	rs62184404	C	T	C	Sox3.mouse_HMG_3	0	1	+	8.54412470581285	9.998995351149714	CATGAATGGCAGTAATT
chr2	234486571	234486572	chr2:234486572:A:C	rs6758801	A	C	A	Sox3.mouse_HMG_3	1	1	+	8.54412470581285	4.367265191956956	CATGAATGGCAGTAATT
chr2	234544100	234544101	chr2:234544101:G:A	rs72977513	G	A	A	Sox3.mouse_HMG_3	11	1	+	2.418988239543409	-2.231186486262729	GATGGATGACAGACAAA
chr2	234567247	234567248	chr2:234567248:A:G	rs940942	A	G	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr2	234603186	234603187	chr2:234603187:C:G	rs74348493	C	G	C	Sox3.mouse_HMG_3	13	1	+	3.281024923848685	-3.326235686613335	TATAAATGTTAATCAGA
chr2	234603194	234603195	chr2:234603195:G:A	rs13426696	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	234690601	234690602	chr2:234690602:T:G	rs10188974	T	G	T	Sox3.mouse_HMG_3	7	1	+	2.5318361205309814	3.381869062761053	TATGAATTCTCTGCATC
chr2	234728901	234728902	chr2:234728902:T:C	rs59715586	T	C	C	Sox3.mouse_HMG_3	1	1	-	4.3153362657396235	1.2152063293023325	TATGAGCTTCATTCATA
chr2	234809116	234809117	chr2:234809117:T:C	rs920574	T	C	T	Sox3.mouse_HMG_3	9	1	+	6.508828481084244	6.501191804092496	TTTGAATTGTATTCCAA
chr2	234845231	234845232	chr2:234845232:A:G	rs6750155	A	G	a	Sox3.mouse_HMG_3	14	1	+	4.173973474338562	-2.207972692088349	AATGAATTCCTTCCATA
chr2	234949541	234949542	chr2:234949542:G:A	rs72985419	G	A	G	Sox3.mouse_HMG_3	3	1	+	2.015580529190657	-3.7659843583385744	ATTGAATGTTATGAATG
chr2	235002450	235002451	chr2:235002451:A:G	rs75135166	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr2	235002495	235002496	chr2:235002496:C:T	rs114761519	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr2	235147441	235147442	chr2:235147442:A:G	rs10171708	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	235147447	235147448	chr2:235147448:A:T	rs56987422	A	T	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr2	235160598	235160599	chr2:235160599:T:C	rs7581788	T	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr2	235164325	235164326	chr2:235164326:C:A	rs111779078	C	A	C	Sox3.mouse_HMG_3	13	1	+	8.768450254782927	2.38581358080555	AATGAATGCCATACAGG
chr2	235612611	235612612	chr2:235612612:A:G	rs78817670	A	G	A	Sox3.mouse_HMG_3	11	1	-	1.9363523558691496	-4.148258470232796	CATGAGTTTCATGCATT
chr2	235709424	235709425	chr2:235709425:T:C	rs13022599	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	236089803	236089804	chr2:236089804:C:T	rs146043154	C	T	c	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	236122138	236122139	chr2:236122139:C:G	rs6753212	C	G	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr2	236236520	236236521	chr2:236236521:T:C	rs62190972	T	C	T	Sox3.mouse_HMG_3	2	1	+	3.555211873708203	-3.0506672445227285	GCTGAATGTCAATCACA
chr2	236336400	236336401	chr2:236336401:A:C	rs62192360	A	C	A	Sox3.mouse_HMG_3	9	1	-	9.702750442557093	4.3551847581907825	CATGAATGGTAGTAATA
chr2	236342750	236342751	chr2:236342751:T:C	rs72978641	T	C	T	Sox3.mouse_HMG_3	15	1	+	4.0616431166566915	-0.6527502950583766	GGAGGATGGCATTCATG
chr2	236343480	236343481	chr2:236343481:G:A	rs72978644	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	236527317	236527318	chr2:236527318:G:A	rs112257912	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	236559805	236559806	chr2:236559806:C:A	rs13383532	C	A	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr2	236824332	236824333	chr2:236824333:T:A	rs78101493	T	A	T	Sox3.mouse_HMG_3	16	1	-	1.0015400197902713	-0.14944903996222492	GCTGGATTCCATTCCTA
chr2	236861798	236861799	chr2:236861799:T:C	rs7578264	T	C	T	Sox3.mouse_HMG_3	14	1	-	2.056765927124191	-4.325180239302719	GATAAATCACAGTCAGG
chr2	236945717	236945718	chr2:236945718:A:G	rs76439962	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	236987546	236987547	chr2:236987547:A:C	rs872121	A	C	A	Sox3.mouse_HMG_3	6	1	-	2.104151393758422	-4.646900091423048	GATGAATGGCAGCCCGA
chr2	236996687	236996688	chr2:236996688:G:T	rs11677911	G	T	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr2	237013080	237013081	chr2:237013081:C:T	rs2573723	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr2	237118594	237118595	chr2:237118595:A:G	rs73999636	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.0628305320487055	-1.0372994043885881	AATGTATTTCTGTCATA
chr2	237255492	237255493	chr2:237255493:G:A	rs13410100	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	237299012	237299013	chr2:237299013:G:A	rs76371498	G	A	G	Sox3.mouse_HMG_3	9	1	-	6.139430820881377	6.147067497873123	GATGCATGGCATTCCTG
chr2	237313499	237313500	chr2:237313500:C:T	rs4392201	C	T	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr2	237315893	237315894	chr2:237315894:G:A	rs4496285	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr2	237315977	237315978	chr2:237315978:A:G	rs2316146	A	G	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr2	237493140	237493141	chr2:237493141:A:G	rs12465081	A	G	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr2	237584538	237584539	chr2:237584539:G:C	rs7597767	G	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	237599455	237599456	chr2:237599456:T:C	rs1316476	T	C	t	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	237684804	237684805	chr2:237684805:G:A	rs570664108	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	237704724	237704725	chr2:237704725:C:T	rs150979408	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	237721001	237721002	chr2:237721002:A:T	rs78997532	A	T	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr2	237721009	237721010	chr2:237721010:T:A	rs113048333	T	A	A	Sox3.mouse_HMG_3	7	1	+	4.781949615758389	-0.9215661566692679	GATGATTTATATGCATA
chr2	237792117	237792118	chr2:237792118:G:A	rs62196076	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr2	237903521	237903522	chr2:237903522:A:C	rs4663805	A	C	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr2	237998999	237999000	chr2:237999000:A:C	rs7563768	A	C	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr2	238016127	238016128	chr2:238016128:C:T	rs62194542	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr2	238580150	238580151	chr2:238580151:C:G	rs11694159	C	G	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	238580160	238580161	chr2:238580161:C:A	rs11694162	C	A	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr2	238585548	238585549	chr2:238585549:A:G	rs55988320	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr2	238654937	238654938	chr2:238654938:G:C	rs907100	G	C	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr2	238763403	238763404	chr2:238763404:G:T	rs55832620	G	T	G	Sox3.mouse_HMG_3	7	1	+	2.763123631016607	1.9130906887865355	AATAAATGGTTTTCAGA
chr2	238872570	238872571	chr2:238872571:A:T	rs150942907	A	T	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	238963170	238963171	chr2:238963171:C:A	rs61325070	C	A	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	239009037	239009038	chr2:239009038:C:A	rs77391222	C	A	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr2	239009038	239009039	chr2:239009039:G:A	rs919154016	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr2	239116990	239116991	chr2:239116991:G:A	rs3791423	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr2	239167383	239167384	chr2:239167384:G:A	rs34909752	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr2	239192671	239192672	chr2:239192672:C:T	rs680564	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr2	239313205	239313206	chr2:239313206:G:A	rs10200850	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr2	239376632	239376633	chr2:239376633:C:T	rs57588482	C	T	C	Sox3.mouse_HMG_3	6	1	+	0.8518845510376356	7.459835192578433	GATGAACGCCATCCAGC
chr2	239586639	239586640	chr2:239586640:A:G	rs79259920	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr2	239589893	239589894	chr2:239589894:C:A	rs113970033	C	A	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr2	239696915	239696916	chr2:239696916:C:T	rs920247	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr2	239890431	239890432	chr2:239890432:G:A	rs868482481	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr2	239896730	239896731	chr2:239896731:C:T	rs6737883	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr2	240125429	240125430	chr2:240125430:C:T	rs79131048	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr2	240156863	240156864	chr2:240156864:C:T	rs34660127	C	T	C	Sox3.mouse_HMG_3	7	1	-	2.384512569164755	-4.169036145492973	CATGAATGTCAGGTATA
chr2	240886720	240886721	chr2:240886721:C:T	rs11680484	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr2	240886721	240886722	chr2:240886722:G:A	rs13422330	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr2	240893446	240893447	chr2:240893447:C:A	rs13422506	C	A	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	240932998	240932999	chr2:240932999:T:C	rs74000150	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr2	241018234	241018235	chr2:241018235:C:T	rs142193960	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr2	241018259	241018260	chr2:241018260:A:G	rs4497870	A	G	A	Sox3.mouse_HMG_3	5	1	+	5.045080239145248	-1.4437546829256156	TATGAATTCAAGTCAGC
chr2	241126037	241126038	chr2:241126038:T:A	rs73112171	T	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr2	241547304	241547305	chr2:241547305:C:T	rs188870015	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr2	241611954	241611955	chr2:241611955:T:C	rs78065183	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr2	241611958	241611959	chr2:241611959:G:A	rs75334585	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr2	241837210	241837211	chr2:241837211:C:G	rs62193123	C	G	-	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr2	241896989	241896990	chr2:241896990:C:G	rs28490306	C	G	.	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr2	241987466	241987467	chr2:241987467:C:T	rs67793808	C	T	.	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr2	241990887	241990888	chr2:241990888:A:G	chr2:241990888:A:G	A	G	.	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr2	242031921	242031922	chr2:242031922:C:T	rs539873451	C	T	.	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr2	242031925	242031926	chr2:242031926:T:C	rs36008162	T	C	.	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr20	264110	264111	chr20:264111:G:A	rs562844920	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr20	291795	291796	chr20:291796:G:A	rs6075791	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr20	423008	423009	chr20:423009:T:G	rs6051908	T	G	G	Sox3.mouse_HMG_3	1	1	-	6.85467397981684	2.6778144659609437	TATGAATTCTATACACA
chr20	461666	461667	chr20:461667:T:C	rs573527183	T	C	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr20	558373	558374	chr20:558374:T:G	rs397883	T	G	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr20	653756	653757	chr20:653757:A:G	rs77406701	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr20	653789	653790	chr20:653790:A:C	rs6053728	A	C	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr20	740695	740696	chr20:740696:A:G	rs9789832	A	G	G	Sox3.mouse_HMG_3	4	1	-	1.0723293842621608	0.9292285406214884	CAAGTATGCCAGTCAAG
chr20	740712	740713	chr20:740713:A:G	rs9789833	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr20	1419340	1419341	chr20:1419341:C:G	rs2144543	C	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr20	1484951	1484952	chr20:1484952:A:G	rs6042544	A	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr20	1535723	1535724	chr20:1535724:C:A	rs111733089	C	A	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr20	1535732	1535733	chr20:1535733:A:T	rs73076966	A	T	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr20	1564882	1564883	chr20:1564883:G:A	rs45512895	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr20	1702397	1702398	chr20:1702398:T:G	rs6111041	T	G	t	Sox3.mouse_HMG_3	14	1	-	2.091306841346202	-4.290639325080709	AATGAATGTTTTTTAAA
chr20	1788049	1788050	chr20:1788050:A:C	rs200884	A	C	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr20	1825675	1825676	chr20:1825676:T:C	rs112072054	T	C	T	Sox3.mouse_HMG_3	10	1	-	7.155809256179785	0.5478586146389863	TTAGAATTGCATTCAAA
chr20	1964820	1964821	chr20:1964821:C:T	rs74402164	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr20	1973692	1973693	chr20:1973693:C:T	rs1022563	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr20	1992114	1992115	chr20:1992115:A:G	rs8123727	A	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr20	2045229	2045230	chr20:2045230:A:T	rs1418046	A	T	A	Sox3.mouse_HMG_3	16	1	+	3.8885032322315816	2.7375141724790852	ACTGAATGATATTGAGA
chr20	2204673	2204674	chr20:2204674:T:C	rs6137318	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr20	2253445	2253446	chr20:2253446:A:G	rs76505287	A	G	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr20	2357207	2357208	chr20:2357208:T:A	rs2422706	T	A	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr20	2357231	2357232	chr20:2357232:C:T	rs2422707	C	T	C	Sox3.mouse_HMG_3	10	1	-	1.511839913888607	8.119790555429404	GAGGAATGTCGGTCAAG
chr20	2452042	2452043	chr20:2452043:C:G	rs7261241	C	G	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr20	2454999	2455000	chr20:2455000:A:T	rs6114328	A	T	a	Sox3.mouse_HMG_3	13	1	-	1.7830966363851768	2.007720572869821	AATTAATTGCATTTAAA
chr20	2455025	2455026	chr20:2455026:G:A	rs78711163	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr20	2533230	2533231	chr20:2533231:A:G	rs6083567	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr20	2539355	2539356	chr20:2539356:T:C	rs79572526	T	C	C	Sox3.mouse_HMG_3	16	1	+	3.4304613805274586	2.56353464105518	TGTGAATTTCGTTCAGT
chr20	2612857	2612858	chr20:2612858:C:T	rs6083848	C	T	C	Sox3.mouse_HMG_3	8	1	-	1.9619932849731936	1.3388766377953805	AATGCATCGTAGTCATC
chr20	2867929	2867930	chr20:2867930:G:A	rs528578869	G	A	G	Sox3.mouse_HMG_3	9	1	-	-0.6270017196833233	-0.6193650426915756	AATGAATGGCGAGCATG
chr20	3350766	3350767	chr20:3350767:A:C	rs6037566	A	C	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr20	3653636	3653637	chr20:3653637:A:G	rs583540	A	G	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr20	3653650	3653651	chr20:3653651:C:T	rs2853207	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr20	3905269	3905270	chr20:3905270:T:C	rs6052162	T	C	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr20	3931711	3931712	chr20:3931712:C:T	rs241602	C	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr20	4014867	4014868	chr20:4014868:A:T	rs112232697	A	T	a	Sox3.mouse_HMG_3	13	1	+	1.626775864710185	1.4021519282255412	GGTGACTTTCATTAATG
chr20	4014878	4014879	chr20:4014879:C:A	rs778343349	C	A	c	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr20	4042368	4042369	chr20:4042369:T:C	rs770997711	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr20	4057075	4057076	chr20:4057076:G:A	rs1891427	G	A	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr20	4113881	4113882	chr20:4113882:T:C	rs60989601	T	C	C	Sox3.mouse_HMG_3	10	1	-	-0.5448718186035932	-7.15282246014439	CAGGAAGGGCAGTCAGA
chr20	4130671	4130672	chr20:4130672:C:T	rs34025044	C	T	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr20	4138416	4138417	chr20:4138417:C:T	rs13039640	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr20	4156209	4156210	chr20:4156210:G:A	rs1765006	G	A	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr20	4156254	4156255	chr20:4156255:C:T	rs1628323	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr20	4428190	4428191	chr20:4428191:C:T	rs71333952	C	T	T	Sox3.mouse_HMG_3	16	1	-	1.1367774288170545	1.1008369723645288	ACTGAATGGCTTTCCTG
chr20	4541912	4541913	chr20:4541913:T:C	rs6133139	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr20	4809927	4809928	chr20:4809928:A:C	rs6037974	A	C	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr20	4809933	4809934	chr20:4809934:C:A	rs2423024	C	A	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr20	4947239	4947240	chr20:4947240:A:G	rs1519864	A	G	-	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr20	4951072	4951073	chr20:4951073:G:A	rs138469376	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr20	4990855	4990856	chr20:4990856:A:C	rs6053016	A	C	C	Sox3.mouse_HMG_3	12	1	-	1.2849811167683545	-5.096093729553556	GTAGAATTACAGTCCTG
chr20	4992799	4992800	chr20:4992800:G:A	rs113321431	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr20	5145740	5145741	chr20:5145741:A:G	rs16990673	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr20	5363417	5363418	chr20:5363418:T:C	rs6085132	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr20	5570850	5570851	chr20:5570851:T:C	rs8118148	T	C	T	Sox3.mouse_HMG_3	9	1	+	5.741167452427743	5.733530775435997	CATGAATTATAGTTAAA
chr20	5582962	5582963	chr20:5582963:G:A	rs6133233	G	A	g	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr20	5582968	5582969	chr20:5582969:A:G	rs2064714	A	G	g	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr20	5734546	5734547	chr20:5734547:C:T	rs6053640	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr20	5969785	5969786	chr20:5969786:G:A	rs55965616	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr20	6069831	6069832	chr20:6069832:C:T	rs6053870	C	T	C	Sox3.mouse_HMG_3	9	1	+	5.562974330090721	5.570611007082467	CATGGATTCCATTCAGT
chr20	6091871	6091872	chr20:6091872:C:T	rs73074353	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr20	6091892	6091893	chr20:6091893:G:C	rs717484	G	C	G	Sox3.mouse_HMG_3	10	1	+	2.523705967497336	2.380605123856663	GGTGAATGACGTGCATA
chr20	6266708	6266709	chr20:6266709:T:C	rs192783266	T	C	T	Sox3.mouse_HMG_3	2	1	+	0.17143424173736577	-6.434444876493565	GATGACTTCCAGTTAGA
chr20	6430912	6430913	chr20:6430913:G:A	rs6139982	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr20	6632184	6632185	chr20:6632185:A:G	rs1884897	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr20	6673169	6673170	chr20:6673170:G:A	rs11698137	G	A	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr20	6711881	6711882	chr20:6711882:G:A	rs990999	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr20	6755541	6755542	chr20:6755542:A:G	rs235730	A	G	G	Sox3.mouse_HMG_3	15	1	-	7.558218562662517	2.8438251509474486	TCTGAATTGCATTCCTA
chr20	6829093	6829094	chr20:6829094:G:T	rs73895332	G	T	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr20	6941898	6941899	chr20:6941899:A:G	rs73597168	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr20	7195708	7195709	chr20:7195709:A:G	rs16993133	A	G	G	Sox3.mouse_HMG_3	2	1	+	3.819586058668494	2.797934811136513	TAACAATGCCATTCAAG
chr20	7308271	7308272	chr20:7308272:G:A	rs6085989	G	A	G	Sox3.mouse_HMG_3	7	1	+	2.3121084393134597	-4.241440275344267	TATATATGGTATTCAGT
chr20	7399768	7399769	chr20:7399769:A:G	rs6086031	A	G	G	Sox3.mouse_HMG_3	9	1	-	1.8915333318913963	1.8838966548996503	TGTGAAGTGTATTCTTA
chr20	7744814	7744815	chr20:7744815:G:A	rs74931895	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr20	7888808	7888809	chr20:7888809:T:C	rs2294305	T	C	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr20	8020824	8020825	chr20:8020825:T:C	rs6055463	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr20	8038655	8038656	chr20:8038656:C:T	rs8184867	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr20	8061167	8061168	chr20:8061168:A:G	rs6140515	A	G	G	Sox3.mouse_HMG_3	14	1	+	2.140075091420184	-4.241871075006727	ATAGAATTTAATTCATG
chr20	8062312	8062313	chr20:8062313:T:C	rs16994386	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr20	8073904	8073905	chr20:8073905:C:T	rs6140524	C	T	C	Sox3.mouse_HMG_3	15	1	-	1.7718339688979066	2.6306153157543273	CCTGAATGCTAGTGAGG
chr20	8077421	8077422	chr20:8077422:G:C	rs972273	G	C	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr20	8212391	8212392	chr20:8212392:C:A	rs6077327	C	A	C	Sox3.mouse_HMG_3	13	1	+	2.0234613675599142	-4.359175306417462	TATGCATTTTATTCTAA
chr20	8252795	8252796	chr20:8252796:G:A	rs6140563	G	A	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr20	8252797	8252798	chr20:8252798:A:C	rs6086377	A	C	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr20	8390397	8390398	chr20:8390398:A:G	rs1232778	A	G	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr20	8646436	8646437	chr20:8646437:C:A	rs138904904	C	A	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr20	8744221	8744222	chr20:8744222:T:C	rs6039247	T	C	T	Sox3.mouse_HMG_3	14	1	+	7.033153322870137	7.033153322870137	GATGAATTTTATTCTGT
chr20	8757322	8757323	chr20:8757323:T:C	rs931643785	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr20	8774335	8774336	chr20:8774336:C:A	rs2235614	C	A	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr20	8903899	8903900	chr20:8903900:G:T	rs4816106	G	T	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr20	8964425	8964426	chr20:8964426:T:A	rs62195410	T	A	A	Sox3.mouse_HMG_3	9	1	+	5.91719586614984	-0.1446594353502244	CTTAAATGATATTCAAG
chr20	8964451	8964452	chr20:8964452:A:C	rs67308886	A	C	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr20	9032434	9032435	chr20:9032435:A:C	chr20:9032435:A:C	A	C	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr20	9110309	9110310	chr20:9110310:A:G	rs13040490	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr20	9200283	9200284	chr20:9200284:G:A	rs62194769	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr20	9235764	9235765	chr20:9235765:C:T	rs74983667	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr20	9311288	9311289	chr20:9311289:C:T	rs117156963	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr20	9363854	9363855	chr20:9363855:A:C	rs145574775	A	C	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr20	9507995	9507996	chr20:9507996:T:C	rs57801842	T	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr20	9535687	9535688	chr20:9535688:G:A	rs67573224	G	A	G	Sox3.mouse_HMG_3	9	1	-	8.120945568414562	8.128582245406307	ACTGAATGGCAGTCACG
chr20	9572147	9572148	chr20:9572148:A:G	rs17406954	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr20	9683890	9683891	chr20:9683891:G:T	rs2143256	G	T	G	Sox3.mouse_HMG_3	13	1	-	3.579052398760737	-2.8035842752166387	AATGCACTACATTCATA
chr20	9683916	9683917	chr20:9683917:T:G	rs2143255	T	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr20	10404170	10404171	chr20:10404171:C:T	rs221670	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr20	10453160	10453161	chr20:10453161:A:G	rs4308167	A	G	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr20	10518930	10518931	chr20:10518931:C:T	rs34198940	C	T	T	Sox3.mouse_HMG_3	1	1	+	0.36459545760028034	1.5713781632670802	ACAGAAAGGTAGTCATG
chr20	10556247	10556248	chr20:10556248:C:G	rs148712172	C	G	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr20	10582009	10582010	chr20:10582010:C:T	rs656478	C	T	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr20	10596901	10596902	chr20:10596902:G:A	rs72623523	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr20	10596914	10596915	chr20:10596915:T:G	rs76749488	T	G	T	Sox3.mouse_HMG_3	14	1	-	5.7366448218529325	-0.6453013445739779	ATTGCATTTCAGTCATG
chr20	10629555	10629556	chr20:10629556:T:C	rs59175600	T	C	C	Sox3.mouse_HMG_3	6	1	+	2.5780505227469517	-4.029900118793846	AATGAATGCTTTTAAAA
chr20	10659441	10659442	chr20:10659442:A:T	rs3790161	A	T	A	Sox3.mouse_HMG_3	2	1	-	1.1334234808492043	-4.593905233490418	AATGAAATTTCTTCAAG
chr20	10813140	10813141	chr20:10813141:A:T	rs1535112	A	T	T	Sox3.mouse_HMG_3	11	1	-	1.7219046351023348	-4.36270619099961	TTTGAATTCTGTTCTTA
chr20	10903201	10903202	chr20:10903202:C:T	rs142342087	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr20	10983026	10983027	chr20:10983027:G:T	rs6074217	G	T	G	Sox3.mouse_HMG_3	7	1	+	2.2255973353110656	1.375564393080994	AATTAACGCCATTCAAG
chr20	10987969	10987970	chr20:10987970:G:A	rs6077995	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr20	11001335	11001336	chr20:11001336:C:A	rs12479526	C	A	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr20	11329493	11329494	chr20:11329494:A:G	rs77345821	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr20	11432501	11432502	chr20:11432502:G:A	rs6078176	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr20	11446081	11446082	chr20:11446082:A:G	rs10485749	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr20	11455641	11455642	chr20:11455642:G:A	rs79968983	G	A	G	Sox3.mouse_HMG_3	11	1	-	-0.0693315233455658	6.01527930275638	GCTGAATGACACCCAAG
chr20	11555556	11555557	chr20:11555557:C:G	rs2423578	C	G	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr20	11581292	11581293	chr20:11581293:G:T	rs149090304	G	T	G	Sox3.mouse_HMG_3	3	1	+	1.2791006730476087	-5.627393811467107	ATTGAATGGCAGGCTTG
chr20	11889339	11889340	chr20:11889340:T:C	rs2223708	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr20	11982942	11982943	chr20:11982943:A:T	rs6033269	A	T	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr20	12217582	12217583	chr20:12217583:C:A	rs765072	C	A	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr20	12467128	12467129	chr20:12467129:C:T	rs75991969	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr20	12592148	12592149	chr20:12592149:C:T	rs6109488	C	T	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr20	12696393	12696394	chr20:12696394:C:T	rs75713251	C	T	C	Sox3.mouse_HMG_3	12	1	-	1.4877328251026376	1.7559968116973175	TGTGAATGGTAGGTATG
chr20	12702470	12702471	chr20:12702471:T:A	rs77848179	T	A	T	Sox3.mouse_HMG_3	1	1	-	3.264856428941356	0.2947796207522615	GATGACTTTTAGTCTTA
chr20	12949806	12949807	chr20:12949807:A:C	rs13036877	A	C	C	Sox3.mouse_HMG_3	4	1	+	1.3910464175904784	-5.359495090528906	TATCAATGACTGTCATC
chr20	12997868	12997869	chr20:12997869:C:T	rs6074541	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr20	13010428	13010429	chr20:13010429:G:A	rs76598140	G	A	G	Sox3.mouse_HMG_3	14	1	+	7.491408902009241	13.873355068436155	AGTGAATTACATTCGTG
chr20	13030302	13030303	chr20:13030303:T:C	rs17812078	T	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr20	13037801	13037802	chr20:13037802:G:A	rs6078895	G	A	g	Sox3.mouse_HMG_3	14	1	+	1.0761909732836155	7.4581371397105265	CATGAGTTTTATTCGTC
chr20	13037820	13037821	chr20:13037821:T:C	rs13038417	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr20	13292635	13292636	chr20:13292636:T:C	rs112573395	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr20	13397840	13397841	chr20:13397841:A:G	rs6079043	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr20	13426398	13426399	chr20:13426399:T:A	rs117727336	T	A	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr20	13610468	13610469	chr20:13610469:G:A	rs111417551	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr20	13723080	13723081	chr20:13723081:G:C	rs6079151	G	C	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr20	13806647	13806648	chr20:13806648:T:G	rs6042366	T	G	T	Sox3.mouse_HMG_3	10	1	+	3.651392109978908	3.7944929536195815	GAAGAATTGTTTTCAAA
chr20	14337474	14337475	chr20:14337475:G:A	rs569720783	G	A	G	Sox3.mouse_HMG_3	11	1	+	1.303529477513694	-3.346645248292444	AGTGAATTGGAGTAATA
chr20	14411388	14411389	chr20:14411389:G:A	rs78241873	G	A	G	Sox3.mouse_HMG_3	16	1	+	0.66855521150493	0.6326147550524044	GCTGAATTCCCTTAATG
chr20	14518483	14518484	chr20:14518484:C:T	rs35658161	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr20	14519037	14519038	chr20:14519038:A:G	rs33967173	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.7960919620877924	-2.918301449627276	TTTGTATTGTTTTCATA
chr20	14562655	14562656	chr20:14562656:T:C	rs146928122	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr20	14712474	14712475	chr20:14712475:G:T	rs182980350	G	T	G	Sox3.mouse_HMG_3	0	1	+	2.690992230604742	2.422071376804988	GTTGAATGCCCTGCATA
chr20	14725969	14725970	chr20:14725970:T:C	rs4813165	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr20	14826606	14826607	chr20:14826607:C:T	rs77009653	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr20	14920423	14920424	chr20:14920424:C:T	rs2423845	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr20	15241003	15241004	chr20:15241004:T:C	rs67738339	T	C	T	Sox3.mouse_HMG_3	6	1	+	0.07409533401357948	-6.533855307527217	TTTGTATGGCATCCAGA
chr20	15257225	15257226	chr20:15257226:G:A	rs4813174	G	A	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr20	15257248	15257249	chr20:15257249:G:T	rs4813175	G	T	T	Sox3.mouse_HMG_3	7	1	+	1.8313823771578743	0.9813494349278019	AATGAATGTTAATAAAT
chr20	15597176	15597177	chr20:15597177:G:A	rs117011844	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr20	15610000	15610001	chr20:15610001:G:T	rs460131	G	T	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr20	15684250	15684251	chr20:15684251:G:C	rs6043439	G	C	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr20	15860927	15860928	chr20:15860928:T:C	rs112157988	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr20	15900130	15900131	chr20:15900131:C:T	rs6043606	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr20	15913944	15913945	chr20:15913945:C:G	rs78034776	C	G	C	Sox3.mouse_HMG_3	11	1	-	9.554724887276741	4.904550161470602	AATGATTTGCAGTCATG
chr20	15979262	15979263	chr20:15979263:A:G	rs6131754	A	G	G	Sox3.mouse_HMG_3	10	1	+	-0.22526159830828552	-6.8332122398490815	CATGCTTTCCATTCAGG
chr20	16040140	16040141	chr20:16040141:C:T	rs775132	C	T	C	Sox3.mouse_HMG_3	15	1	-	1.9948201138493749	2.8536014607057956	GATGAATGGCAGAGAGG
chr20	16117214	16117215	chr20:16117215:T:C	rs6080128	T	C	T	Sox3.mouse_HMG_3	12	1	+	5.231920923544988	-0.9609326438557785	GATGAATCGTATTTATT
chr20	16679370	16679371	chr20:16679371:G:T	rs1885571	G	T	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr20	16691614	16691615	chr20:16691615:T:A	rs8116758	T	A	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr20	16694596	16694597	chr20:16694597:C:A	rs6044241	C	A	C	Sox3.mouse_HMG_3	7	1	-	0.017162632476514394	-0.832870309753557	GGAGATTGTTATTCAGG
chr20	16694609	16694610	chr20:16694610:T:C	rs6044242	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr20	16952428	16952429	chr20:16952429:G:A	rs73897669	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr20	17091713	17091714	chr20:17091714:C:T	rs7509169	C	T	C	Sox3.mouse_HMG_3	7	1	-	5.16693817529155	-1.3866105393661774	CATAAATGGTATTTATG
chr20	17173150	17173151	chr20:17173151:G:T	rs852101	G	T	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr20	17388720	17388721	chr20:17388721:G:A	rs115390527	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr20	17443863	17443864	chr20:17443864:C:T	rs6034829	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr20	17807562	17807563	chr20:17807563:G:C	chr20:17807563:G:C	G	C	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr20	18009144	18009145	chr20:18009145:C:T	rs6045137	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr20	18493151	18493152	chr20:18493152:C:T	rs2424218	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr20	18904904	18904905	chr20:18904905:C:T	rs75888453	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr20	18927073	18927074	chr20:18927074:A:T	rs6075429	A	T	A	Sox3.mouse_HMG_3	11	1	-	1.0446760920430642	-5.039934734058881	GCTGAATTTCATAAATG
chr20	18983715	18983716	chr20:18983716:T:C	rs6045728	T	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr20	19012003	19012004	chr20:19012004:A:G	rs4600727	A	G	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr20	19130611	19130612	chr20:19130612:G:A	rs6075475	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr20	19257136	19257137	chr20:19257137:G:A	rs16980264	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr20	19335398	19335399	chr20:19335399:T:G	rs6514992	T	G	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr20	19428412	19428413	chr20:19428413:G:T	rs3790200	G	T	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr20	19692447	19692448	chr20:19692448:A:G	rs117713601	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr20	19785854	19785855	chr20:19785855:G:A	rs73901290	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr20	19876417	19876418	chr20:19876418:G:C	rs34134500	G	C	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr20	19936009	19936010	chr20:19936010:G:T	rs13042178	G	T	G	Sox3.mouse_HMG_3	9	1	-	-0.02460747772479066	-6.07882610223311	CATGACTTGCAGGCAAA
chr20	19944665	19944666	chr20:19944666:A:G	rs6035483	A	G	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr20	19952543	19952544	chr20:19952544:G:A	rs1876813	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr20	19985850	19985851	chr20:19985851:A:G	rs7260833	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr20	19985872	19985873	chr20:19985873:C:A	rs199600	C	A	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr20	20210358	20210359	chr20:20210359:A:G	rs74643885	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr20	20452954	20452955	chr20:20452955:T:C	rs6046866	T	C	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr20	20760757	20760758	chr20:20760758:T:G	rs4814986	T	G	T	Sox3.mouse_HMG_3	7	1	+	8.096910631292806	8.94694357352288	TTTGAATTTCATGCATG
chr20	20863253	20863254	chr20:20863254:G:C	rs6075731	G	C	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr20	20863257	20863258	chr20:20863258:A:G	rs6082209	A	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr20	20969495	20969496	chr20:20969496:C:T	rs17735762	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr20	21074712	21074713	chr20:21074713:C:T	rs12624732	C	T	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr20	21075422	21075423	chr20:21075423:C:T	rs6132393	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr20	21104670	21104671	chr20:21104671:G:C	rs117191758	G	C	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr20	21342848	21342849	chr20:21342849:G:C	rs529345135	G	C	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr20	21726121	21726122	chr20:21726122:A:G	rs11699081	A	G	A	Sox3.mouse_HMG_3	14	1	+	-0.05907478163057456	-6.441020948057485	GTTCAGTGGCATTCAGG
chr20	21726125	21726126	chr20:21726126:G:A	rs57270260	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr20	22395420	22395421	chr20:22395421:C:T	rs175323	C	T	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr20	22743609	22743610	chr20:22743610:C:A	rs13044931	C	A	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr20	22743628	22743629	chr20:22743629:A:G	rs73900551	A	G	A	Sox3.mouse_HMG_3	16	1	-	1.9834752689015964	1.1165485294293176	GTTCAATGGCATTCCTT
chr20	22750874	22750875	chr20:22750875:C:G	rs6048326	C	G	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr20	23019528	23019529	chr20:23019529:G:A	rs74912816	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr20	23039086	23039087	chr20:23039087:T:C	rs2235953	T	C	T	Sox3.mouse_HMG_3	12	1	+	10.107946927247134	3.9150933598463658	AATGAATTGAAGTCATG
chr20	23049377	23049378	chr20:23049378:C:T	rs1800576	C	T	c	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr20	23115953	23115954	chr20:23115954:G:T	rs34151880	G	T	G	Sox3.mouse_HMG_3	15	1	+	1.4834897667923583	4.6060805778856	GATAATTTGTAGTCAGG
chr20	23143206	23143207	chr20:23143207:C:A	rs114916892	C	A	C	Sox3.mouse_HMG_3	7	1	-	-0.9036658123456041	-1.7536987545756757	GATGACTGCTTTTCCTG
chr20	23163792	23163793	chr20:23163793:G:A	rs79837060	G	A	g	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr20	23337825	23337826	chr20:23337826:G:A	rs6076052	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr20	23372047	23372048	chr20:23372048:C:A	rs7988	C	A	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr20	23422097	23422098	chr20:23422098:A:G	rs761725	A	G	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr20	23423301	23423302	chr20:23423302:A:G	rs2424553	A	G	G	Sox3.mouse_HMG_3	11	1	-	2.943496474928494	-3.1411143511734503	GATGACTTCTATTCTTC
chr20	23475900	23475901	chr20:23475901:A:G	rs1028523	A	G	A	Sox3.mouse_HMG_3	14	1	+	7.061588020418688	0.6796418539917773	GGTGAGTGGCAGTCATT
chr20	23598302	23598303	chr20:23598303:T:A	rs6036463	T	A	T	Sox3.mouse_HMG_3	10	1	-	4.68821670943183	-2.06283477574964	GTTGAACTTCATTCAAT
chr20	23697399	23697400	chr20:23697400:C:A	rs34438831	C	A	C	Sox3.mouse_HMG_3	0	1	+	2.165927520878115	3.064435118868391	CTTGAATTACAGTCGGG
chr20	23736668	23736669	chr20:23736669:G:A	rs6083242	G	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr20	23753970	23753971	chr20:23753971:G:T	rs4470397	G	T	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr20	23795181	23795182	chr20:23795182:T:C	rs6049129	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr20	23831907	23831908	chr20:23831908:C:G	rs3901412	C	G	G	Sox3.mouse_HMG_3	1	1	+	8.225824163222974	9.302553740641578	TCTGAACGGTATTCATG
chr20	24050085	24050086	chr20:24050086:C:T	rs73092922	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr20	24066516	24066517	chr20:24066517:G:C	rs6114452	G	C	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr20	24138878	24138879	chr20:24138879:G:A	rs6049425	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr20	24138920	24138921	chr20:24138921:T:C	rs77833939	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr20	24149988	24149989	chr20:24149989:A:C	rs6049435	A	C	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr20	24161447	24161448	chr20:24161448:A:G	rs78950780	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr20	24331836	24331837	chr20:24331837:C:T	rs7346006	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr20	24406510	24406511	chr20:24406511:C:T	rs34808015	C	T	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr20	24436790	24436791	chr20:24436791:A:C	rs6049686	A	C	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr20	24478236	24478237	chr20:24478237:C:T	rs6049718	C	T	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr20	24599095	24599096	chr20:24599096:A:G	rs4815282	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr20	24608823	24608824	chr20:24608824:A:C	chr20:24608824:A:C	A	C	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr20	24733275	24733276	chr20:24733276:G:A	rs6036896	G	A	G	Sox3.mouse_HMG_3	12	1	-	0.31430203360592857	6.507155601006695	GATGGATGGCATCCTTG
chr20	24799273	24799274	chr20:24799274:A:G	rs226695	A	G	G	Sox3.mouse_HMG_3	10	1	+	1.620029440048787	-4.987921201492009	GATGAGTTCCAGTCCTC
chr20	24826068	24826069	chr20:24826069:C:T	rs6036920	C	T	C	Sox3.mouse_HMG_3	5	1	-	1.983283707419051	8.472118629489916	TATGTGTGCTAGTCATC
chr20	24937902	24937903	chr20:24937903:A:G	rs6083686	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr20	25037886	25037887	chr20:25037887:G:A	rs1249795155	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr20	25117598	25117599	chr20:25117599:T:A	rs4813549	T	A	A	Sox3.mouse_HMG_3	10	1	-	6.266011176233206	-0.4850403089482638	GATAAATTGTATTCTTG
chr20	25126651	25126652	chr20:25126652:C:T	rs8115505	C	T	C	Sox3.mouse_HMG_3	10	1	+	3.432439417968973	3.432439417968973	TATGAATGCTCATCAAA
chr20	25126730	25126731	chr20:25126731:T:C	rs8122274	T	C	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr20	25160762	25160763	chr20:25160763:G:C	rs6107007	G	C	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr20	25247640	25247641	chr20:25247641:C:T	rs112461309	C	T	C	Sox3.mouse_HMG_3	9	1	+	0.3313282129000894	0.3389648898918354	GGTGGATGCCTTTCAAG
chr20	25254492	25254493	chr20:25254493:G:A	rs3787081	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr20	25378592	25378593	chr20:25378593:G:T	rs4815413	G	T	G	Sox3.mouse_HMG_3	3	1	-	-0.24980110343422657	0.7181247447415927	GGTCAATGCCGGTCATT
chr20	25384701	25384702	chr20:25384702:A:G	rs144667741	A	G	A	Sox3.mouse_HMG_3	7	1	-	-0.691003054254957	-6.094414234232276	GCTGCAGTGCAGTCATG
chr20	25384703	25384704	chr20:25384704:T:C	rs4813563	T	C	C	Sox3.mouse_HMG_3	5	1	-	-0.691003054254957	-7.179837976325819	GCTGCAGTGCAGTCATG
chr20	25444859	25444860	chr20:25444860:T:C	rs1029496521	T	C	T	Sox3.mouse_HMG_3	14	1	-	3.004878164391127	-3.3770680020357835	GTTGAAAAGTATTCATG
chr20	25637529	25637530	chr20:25637530:T:C	rs6050737	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr20	25670242	25670243	chr20:25670243:A:G	rs77584490	A	G	A	Sox3.mouse_HMG_3	15	1	-	2.5755267213028197	-2.138866690412249	AATGAATTGGAGCCATC
chr20	25907299	25907300	chr20:25907300:T:A	rs6138716	T	A	.	Sox3.mouse_HMG_3	6	1	+	4.7373089515023565	-2.013742533679113	ATTGAATGACAGTCCAA
chr20	25999973	25999974	chr20:25999974:C:T	rs139839080	C	T	.	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr20	26366587	26366588	chr20:26366588:T:C	rs1195880412	T	C	.	Sox3.mouse_HMG_3	1	1	+	0.7698298434070661	-0.4369528622597343	GTTGCATTCAAGTCATG
chr20	26554842	26554843	chr20:26554843:C:G	rs1286713693	C	G	.	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr20	28557699	28557700	chr20:28557700:A:T	rs1399571794	A	T	.	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr20	28557707	28557708	chr20:28557708:C:T	rs1171706564	C	T	.	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr20	28563456	28563457	chr20:28563457:C:T	chr20:28563457:C:T	C	T	.	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr20	29263867	29263868	chr20:29263868:T:A	rs1161910405	T	A	.	Sox3.mouse_HMG_3	6	1	+	2.0805085348436982	-4.670542950337771	TATAAATGCTAGACAGA
chr20	29263879	29263880	chr20:29263880:G:T	rs1420143201	G	T	.	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr20	29263897	29263898	chr20:29263898:T:C	rs1186552524	T	C	.	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr20	29741649	29741650	chr20:29741650:T:C	rs1463538636	T	C	.	Sox3.mouse_HMG_3	14	1	-	3.2209686306202725	-3.160977535806639	TATGACTTTTAGCCATG
chr20	29874654	29874655	chr20:29874655:A:G	rs1355316291	A	G	.	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr20	30406626	30406627	chr20:30406627:C:G	rs8119782	C	G	.	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr20	30537458	30537459	chr20:30537459:A:G	rs1321228234	A	G	.	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr20	30815649	30815650	chr20:30815650:C:G	rs1229546103	C	G	.	Sox3.mouse_HMG_3	16	1	-	0.1857191860191103	-1.8681370696581905	TGTGAACTCCAGTCCTG
chr20	30815683	30815684	chr20:30815684:G:A	rs1332060940	G	A	.	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr20	31052366	31052367	chr20:31052367:T:A	rs1192100751	T	A	.	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr20	31055109	31055110	chr20:31055110:A:C	rs1390735808	A	C	.	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr20	31058821	31058822	chr20:31058822:A:C	rs1273849235	A	C	.	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr20	31061734	31061735	chr20:31061735:A:C	rs1193652819	A	C	.	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr20	31062691	31062692	chr20:31062692:G:A	rs1416128291	G	A	.	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr20	31062728	31062729	chr20:31062729:G:T	rs1324040141	G	T	.	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr20	31072149	31072150	chr20:31072150:G:A	rs1014902181	G	A	.	Sox3.mouse_HMG_3	8	1	-	1.425341488471079	1.1632217435549732	TATCAATTCCAATCAAT
chr20	31072164	31072165	chr20:31072165:G:C	rs1033473168	G	C	.	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr20	31072513	31072514	chr20:31072514:G:T	rs1439122197	G	T	.	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr20	31072527	31072528	chr20:31072528:T:C	rs923527773	T	C	.	Sox3.mouse_HMG_3	10	1	-	6.80368497062075	0.1957343290799528	TTTCAATTCCATTCATT
chr20	31072557	31072558	chr20:31072558:T:C	rs906444085	T	C	.	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr20	31073812	31073813	chr20:31073813:A:C	rs1045747975	A	C	.	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr20	31073824	31073825	chr20:31073825:G:A	rs1313917420	G	A	.	Sox3.mouse_HMG_3	8	1	-	3.941869620711405	3.679749875795298	GTTCAATTCCATTCAAC
chr20	31073829	31073830	chr20:31073830:G:C	rs1448166452	G	C	.	Sox3.mouse_HMG_3	3	1	-	3.941869620711405	10.691360356416455	GTTCAATTCCATTCAAC
chr20	31162042	31162043	chr20:31162043:G:C	rs1239229376	G	C	.	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr20	31162066	31162067	chr20:31162067:G:A	rs1247989155	G	A	.	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr20	31168474	31168475	chr20:31168475:T:C	rs940707642	T	C	.	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr20	31185278	31185279	chr20:31185279:T:G	rs1360785556	T	G	.	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr20	31186030	31186031	chr20:31186031:A:C	rs1398426065	A	C	.	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr20	31712418	31712419	chr20:31712419:A:G	rs6060857	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr20	31854194	31854195	chr20:31854195:A:T	rs6089100	A	T	A	Sox3.mouse_HMG_3	5	1	+	8.886535746653813	2.279095082175104	GATGAATTGCACTCAAT
chr20	31880435	31880436	chr20:31880436:A:G	rs532924493	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr20	31880482	31880483	chr20:31880483:G:C	rs6058480	G	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr20	32003235	32003236	chr20:32003236:C:T	rs78428620	C	T	C	Sox3.mouse_HMG_3	8	1	-	-0.3331180013140276	-0.9562346484918407	GGTGAATGGGGGTCAGG
chr20	32284999	32285000	chr20:32285000:C:T	rs35290636	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr20	32334765	32334766	chr20:32334766:G:T	rs1424738085	G	T	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr20	32373537	32373538	chr20:32373538:G:A	rs4911223	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr20	32510761	32510762	chr20:32510762:G:T	rs293567	G	T	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr20	32526675	32526676	chr20:32526676:G:A	rs879829	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr20	32619869	32619870	chr20:32619870:A:G	rs555760650	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr20	32619905	32619906	chr20:32619906:T:C	rs458918	T	C	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr20	32742737	32742738	chr20:32742738:A:G	rs989997578	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr20	33021626	33021627	chr20:33021627:T:C	rs13043556	T	C	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr20	33209898	33209899	chr20:33209899:T:G	rs1169747323	T	G	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr20	33262694	33262695	chr20:33262695:C:A	rs12480728	C	A	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr20	33569579	33569580	chr20:33569580:T:C	rs905420026	T	C	T	Sox3.mouse_HMG_3	14	1	+	2.28178418575465	2.28178418575465	GATGAATTGTATTGTGA
chr20	33883507	33883508	chr20:33883508:T:A	rs6119413	T	A	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr20	34633901	34633902	chr20:34633902:G:A	rs192102685	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr20	34791797	34791798	chr20:34791798:A:T	rs79202837	A	T	A	Sox3.mouse_HMG_3	15	1	-	1.8695521498454257	-0.39425731439139544	TGAGAATTTCCTTCATG
chr20	34952783	34952784	chr20:34952784:C:T	rs6060128	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr20	34952812	34952813	chr20:34952813:C:T	rs12106012	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr20	35251463	35251464	chr20:35251464:C:T	rs60486449	C	T	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr20	35321948	35321949	chr20:35321949:T:C	rs6060370	T	C	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr20	35540103	35540104	chr20:35540104:C:T	rs75824338	C	T	T	Sox3.mouse_HMG_3	7	1	+	2.555399730788962	7.958810910766282	TATGAATCGTCTTCAAT
chr20	35540121	35540122	chr20:35540122:G:A	rs2104417	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr20	35640757	35640758	chr20:35640758:C:T	rs6058288	C	T	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr20	35790135	35790136	chr20:35790136:C:T	rs111433174	C	T	C	Sox3.mouse_HMG_3	13	1	+	0.9964970380325417	-5.6107635724294775	CTAGAATTACATGCATG
chr20	35875638	35875639	chr20:35875639:G:T	rs116579542	G	T	g	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr20	35875643	35875644	chr20:35875644:A:C	rs117813572	A	C	a	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr20	35894139	35894140	chr20:35894140:T:C	rs138301026	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr20	35894144	35894145	chr20:35894145:G:A	rs17093216	G	A	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr20	36418817	36418818	chr20:36418818:T:G	rs4494819	T	G	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr20	36425392	36425393	chr20:36425393:C:A	chr20:36425393:C:A	C	A	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr20	36884244	36884245	chr20:36884245:A:G	rs1291133	A	G	G	Sox3.mouse_HMG_3	6	1	-	2.3147758086567958	-4.293174832884003	AAGAAATGCCATTCAGA
chr20	36897236	36897237	chr20:36897237:A:C	rs1291143	A	C	C	Sox3.mouse_HMG_3	11	1	-	2.8918913197340563	1.4574552194382495	TATGATTGGCATGCAGG
chr20	36975521	36975522	chr20:36975522:G:T	rs186039564	G	T	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr20	37207485	37207486	chr20:37207486:A:G	rs1079657	A	G	G	Sox3.mouse_HMG_3	9	1	-	2.3953956159225367	2.3877589389307907	TAGGAATGATAATCAGA
chr20	37232026	37232027	chr20:37232027:G:A	rs909870	G	A	A	Sox3.mouse_HMG_3	3	1	+	2.4749210897159353	-3.3066437978132965	TCTGAATGGCAGTGAGT
chr20	37701661	37701662	chr20:37701662:C:T	rs116659433	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr20	37842907	37842908	chr20:37842908:A:G	rs6126259	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.7802449131448228	-4.708590008926041	GATGCATTGCAGCCAAG
chr20	38118426	38118427	chr20:38118427:A:G	rs2092358	A	G	g	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr20	38141436	38141437	chr20:38141437:G:A	rs12624511	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr20	38252224	38252225	chr20:38252225:C:T	rs77082727	C	T	c	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr20	38315625	38315626	chr20:38315626:A:G	rs554807689	A	G	a	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr20	38413421	38413422	chr20:38413422:A:G	rs146788738	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr20	38665052	38665053	chr20:38665053:A:G	rs732503	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr20	38791585	38791586	chr20:38791586:A:G	rs111828679	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr20	38811097	38811098	chr20:38811098:A:T	rs79947117	A	T	A	Sox3.mouse_HMG_3	12	1	-	2.6091163330680622	-3.503694526659168	AAGGAATGCCATTCTAG
chr20	39070792	39070793	chr20:39070793:T:G	rs66465343	T	G	T	Sox3.mouse_HMG_3	15	1	+	-0.32327827412963894	-3.4458690852228804	GCTGGAGTGCAGTCATG
chr20	39227429	39227430	chr20:39227430:G:A	rs6028341	G	A	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr20	39452446	39452447	chr20:39452447:T:C	rs2206434	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr20	39849990	39849991	chr20:39849991:C:T	rs143652643	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr20	39850013	39850014	chr20:39850014:C:T	rs148097573	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr20	40266145	40266146	chr20:40266146:A:G	rs6071994	A	G	G	Sox3.mouse_HMG_3	3	1	-	3.4188919311282544	3.575895679937919	CATTAATGATATTGATG
chr20	40336091	40336092	chr20:40336092:C:T	rs73609355	C	T	C	Sox3.mouse_HMG_3	11	1	-	1.283809337863107	-3.3663653879430315	TGAGAATTGCAGTGATG
chr20	40603656	40603657	chr20:40603657:A:G	rs6029202	A	G	A	Sox3.mouse_HMG_3	6	1	-	6.356944541403271	-0.25100610013752556	TCAGAATTTCATTCATT
chr20	40646829	40646830	chr20:40646830:G:A	rs6016399	G	A	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr20	40743997	40743998	chr20:40743998:G:A	rs73300124	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr20	40795632	40795633	chr20:40795633:G:T	rs2206663	G	T	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr20	40811613	40811614	chr20:40811614:G:A	rs6029347	G	A	A	Sox3.mouse_HMG_3	16	1	+	4.217706068663677	4.1817656122111515	TATGTATGGTTGTCATG
chr20	40811628	40811629	chr20:40811629:T:C	rs577411018	T	C	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr20	41187014	41187015	chr20:41187015:G:A	rs1003193011	G	A	G	Sox3.mouse_HMG_3	11	1	-	3.3880795831801036	9.472690409282048	TATGTATGACACTCAAA
chr20	41308392	41308393	chr20:41308393:A:G	rs141517418	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr20	41332168	41332169	chr20:41332169:A:G	rs6016546	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr20	42053882	42053883	chr20:42053883:C:T	rs6029947	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr20	42285265	42285266	chr20:42285266:T:C	rs79606907	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr20	42627874	42627875	chr20:42627875:T:C	rs10485695	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr20	42814748	42814749	chr20:42814749:A:G	rs208219	A	G	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr20	42980473	42980474	chr20:42980474:G:T	rs4812663	G	T	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr20	43188060	43188061	chr20:43188061:G:A	rs143435342	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr20	43188072	43188073	chr20:43188073:T:C	rs2235206	T	C	T	Sox3.mouse_HMG_3	9	1	+	1.584162140797269	1.5765254638055226	CGTGAGTGGTATTAATG
chr20	43188078	43188079	chr20:43188079:T:C	rs117819143	T	C	T	Sox3.mouse_HMG_3	15	1	+	1.584162140797269	-3.1302312709177995	CGTGAGTGGTATTAATG
chr20	43404962	43404963	chr20:43404963:C:T	rs57855348	C	T	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr20	43404968	43404969	chr20:43404969:A:C	chr20:43404969:A:C	A	C	A	Sox3.mouse_HMG_3	4	1	+	0.759158424963687	-5.991383083155699	GAAGACTTCCAGTCAAT
chr20	43446482	43446483	chr20:43446483:G:A	rs13038619	G	A	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr20	43459216	43459217	chr20:43459217:G:A	rs776429265	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr20	43590296	43590297	chr20:43590297:C:G	rs112932648	C	G	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr20	43833801	43833802	chr20:43833802:G:A	rs1347633493	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr20	43895206	43895207	chr20:43895207:C:T	rs79193026	C	T	C	Sox3.mouse_HMG_3	7	1	-	5.421908080200567	-1.1316406344571608	GGTGAATGGCAGCCAGG
chr20	43895228	43895229	chr20:43895229:A:G	rs6103499	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr20	44100490	44100491	chr20:44100491:T:C	rs6031380	T	C	T	Sox3.mouse_HMG_3	15	1	+	1.2405298732755903	-3.473863538439478	AATAAATGGGAATCATG
chr20	44100508	44100509	chr20:44100509:G:A	rs6031381	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr20	44522245	44522246	chr20:44522246:A:G	rs2425644	A	G	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr20	44542358	44542359	chr20:44542359:G:A	rs11696619	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr20	44638212	44638213	chr20:44638213:A:G	rs3787359	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr20	44709291	44709292	chr20:44709292:T:C	rs1022923	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr20	44914940	44914941	chr20:44914941:A:G	rs6130713	A	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr20	45177193	45177194	chr20:45177194:T:C	rs13043503	T	C	T	Sox3.mouse_HMG_3	2	1	-	2.4157802844258587	1.3941290368938786	AGAGAATGCTATTCACC
chr20	45179411	45179412	chr20:45179412:T:G	chr20:45179412:T:G	T	G	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr20	45268721	45268722	chr20:45268722:T:C	rs6104082	T	C	t	Sox3.mouse_HMG_3	9	1	+	2.6377720852634408	2.630135408271695	CCTGAATTGTAGCCAAG
chr20	45355031	45355032	chr20:45355032:A:G	rs73907919	A	G	A	Sox3.mouse_HMG_3	5	1	+	2.6813977823150426	-3.8074371397558195	GATGAATGCCATTTGGA
chr20	45611586	45611587	chr20:45611587:T:A	rs2425714	T	A	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr20	45857532	45857533	chr20:45857533:G:A	rs541836451	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr20	46023752	46023753	chr20:46023753:T:C	rs7363950	T	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr20	46023757	46023758	chr20:46023758:C:T	rs62215576	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr20	46279395	46279396	chr20:46279396:A:G	rs12479669	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr20	46369062	46369063	chr20:46369063:C:T	rs2297055	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr20	46485690	46485691	chr20:46485691:C:T	rs400597	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr20	46702653	46702654	chr20:46702654:A:T	rs6012016	A	T	T	Sox3.mouse_HMG_3	12	1	-	0.11398134695830409	-5.998829512768927	GCTGAAGGCTGTTCATT
chr20	46953703	46953704	chr20:46953704:A:G	rs11696503	A	G	a	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr20	47027206	47027207	chr20:47027207:A:G	rs1340775	A	G	A	Sox3.mouse_HMG_3	5	1	+	0.609409507703447	-5.879425414367416	GGTGAAATGGAGTCATT
chr20	47111859	47111860	chr20:47111860:A:G	rs6018285	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr20	47118484	47118485	chr20:47118485:C:G	rs6122555	C	G	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr20	47392646	47392647	chr20:47392647:G:T	rs113258056	G	T	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr20	47790514	47790515	chr20:47790515:A:G	rs73910766	A	G	A	Sox3.mouse_HMG_3	6	1	-	2.0292242155346454	-4.578726426006152	AGTGAATTGCACTAATG
chr20	47911145	47911146	chr20:47911146:T:C	rs3091938	T	C	C	Sox3.mouse_HMG_3	11	1	+	2.2220150033324035	-3.862595822769543	AGTGAAAGGTATGCATG
chr20	47922158	47922159	chr20:47922159:T:A	rs992584	T	A	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr20	47965190	47965191	chr20:47965191:C:T	rs6094928	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr20	48019637	48019638	chr20:48019638:G:T	rs62202693	G	T	G	Sox3.mouse_HMG_3	13	1	-	8.316692803155586	1.9340561291782097	GGTGAATTACATTCTTG
chr20	48107081	48107082	chr20:48107082:A:G	rs6018920	A	G	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr20	48107121	48107122	chr20:48107122:C:G	rs73126053	C	G	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr20	48175641	48175642	chr20:48175642:C:T	rs689438	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr20	48200121	48200122	chr20:48200122:C:T	rs6095008	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr20	48245133	48245134	chr20:48245134:C:G	rs60884881	C	G	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr20	48262498	48262499	chr20:48262499:T:C	rs226810	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr20	48268737	48268738	chr20:48268738:C:T	rs226815	C	T	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr20	48453941	48453942	chr20:48453942:T:C	rs73609624	T	C	T	Sox3.mouse_HMG_3	12	1	+	6.968729538589354	0.7758759711885888	CGTGAATGTGAGTCATG
chr20	48612618	48612619	chr20:48612619:T:G	rs4810837	T	G	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr20	48737910	48737911	chr20:48737911:A:G	rs79895253	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr20	48823682	48823683	chr20:48823683:C:G	rs4809728	C	G	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr20	48837633	48837634	chr20:48837634:G:A	rs34280360	G	A	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr20	48850969	48850970	chr20:48850970:A:G	rs6095327	A	G	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr20	48914616	48914617	chr20:48914617:G:C	rs6012557	G	C	G	Sox3.mouse_HMG_3	11	1	+	1.0306791885347084	-3.6194955372714293	TCTGCATTCCAGTCAAC
chr20	49052470	49052471	chr20:49052471:C:A	rs186651862	C	A	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr20	49505440	49505441	chr20:49505441:A:G	rs5602	A	G	g	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr20	49560556	49560557	chr20:49560557:A:G	rs74468948	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr20	49583418	49583419	chr20:49583419:G:A	rs477359	G	A	A	Sox3.mouse_HMG_3	9	1	-	1.5572832626721866	1.5649199396639335	TGCGAATTTCAGTCACA
chr20	49647723	49647724	chr20:49647724:C:T	rs8122923	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr20	49670555	49670556	chr20:49670556:C:T	rs6095605	C	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr20	49853749	49853750	chr20:49853750:C:T	rs77684695	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr20	50162469	50162470	chr20:50162470:T:C	rs6020306	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr20	50189777	50189778	chr20:50189778:A:G	rs1888086	A	G	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr20	50271514	50271515	chr20:50271515:A:G	rs368804984	A	G	A	Sox3.mouse_HMG_3	2	1	-	2.6815553837083037	-3.924323734522628	TTTGAAGGGTGTTCATG
chr20	50320282	50320283	chr20:50320283:A:T	rs9974000	A	T	A	Sox3.mouse_HMG_3	5	1	+	1.3902586475825889	-5.217182016896123	TGTGAATCCCAGTCTTG
chr20	50462791	50462792	chr20:50462792:A:G	rs4380304	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr20	50756448	50756449	chr20:50756449:G:A	rs73912230	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr20	50860426	50860427	chr20:50860427:G:A	rs6020800	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr20	50933451	50933452	chr20:50933452:T:C	rs1038353061	T	C	T	Sox3.mouse_HMG_3	14	1	+	4.591622164986929	4.591622164986929	GATGAATTTTCTTCTTG
chr20	51122110	51122111	chr20:51122111:A:G	rs230011	A	G	A	Sox3.mouse_HMG_3	2	1	+	0.4413998117083149	-0.5802514358236663	GCAGAATGTCTGTCATA
chr20	51122130	51122131	chr20:51122131:T:C	rs6096269	T	C	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr20	51142728	51142729	chr20:51142729:G:A	rs73909650	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr20	51312124	51312125	chr20:51312125:A:C	chr20:51312125:A:C	A	C	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr20	51525337	51525338	chr20:51525338:G:A	rs73277959	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr20	51554829	51554830	chr20:51554830:C:T	rs147317695	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr20	51554830	51554831	chr20:51554831:A:G	rs4811193	A	G	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr20	51554861	51554862	chr20:51554862:G:A	rs76423759	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr20	51614978	51614979	chr20:51614979:A:G	rs6063678	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr20	51739661	51739662	chr20:51739662:G:A	rs78663430	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr20	51739697	51739698	chr20:51739698:G:A	rs6067915	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr20	51781461	51781462	chr20:51781462:C:T	rs761212	C	T	c	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr20	51934152	51934153	chr20:51934153:A:T	rs4809880	A	T	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr20	51934153	51934154	chr20:51934154:C:A	rs4811268	C	A	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr20	51938784	51938785	chr20:51938785:G:A	rs1013466	G	A	g	Sox3.mouse_HMG_3	8	1	+	0.3924326945628578	-0.23068395261495533	GCTGAGAGGTAGTCATA
chr20	51971999	51972000	chr20:51972000:A:G	rs73618714	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr20	52154037	52154038	chr20:52154038:T:A	rs3787179	T	A	T	Sox3.mouse_HMG_3	14	1	-	1.7976369464627193	-4.584309219964191	TATGAATTTTTTTTAAA
chr20	52243121	52243122	chr20:52243122:T:G	rs4811315	T	G	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr20	52676384	52676385	chr20:52676385:C:T	rs6022039	C	T	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr20	52837618	52837619	chr20:52837619:G:C	rs4254558	G	C	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr20	52847474	52847475	chr20:52847475:C:T	rs60203304	C	T	C	Sox3.mouse_HMG_3	2	1	-	-0.5369834648142475	0.4846677827177337	CTGGAGTGCCAGTCATG
chr20	52871482	52871483	chr20:52871483:G:A	rs73148082	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr20	53053832	53053833	chr20:53053833:T:G	rs6091627	T	G	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr20	53104685	53104686	chr20:53104686:G:A	rs2800996	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr20	53149728	53149729	chr20:53149729:A:G	rs76552090	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr20	53188181	53188182	chr20:53188182:G:A	rs1293382	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr20	53196099	53196100	chr20:53196100:T:C	rs117318756	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.9040505882155103	-4.701828530015421	TTTGAATTCCATCGATA
chr20	53348929	53348930	chr20:53348930:C:T	rs2904358	C	T	c	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr20	53497645	53497646	chr20:53497646:C:T	rs6097457	C	T	C	Sox3.mouse_HMG_3	6	1	+	3.3600264396978066	9.967977081238605	GATGAACGACATGCAAA
chr20	53621623	53621624	chr20:53621624:G:A	rs78500454	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr20	53639656	53639657	chr20:53639657:C:A	rs1014787825	C	A	c	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr20	53748220	53748221	chr20:53748221:T:G	rs8117366	T	G	T	Sox3.mouse_HMG_3	0	1	+	4.892600894516738	5.161521748316492	TGTTAATGATAGTCATC
chr20	53748927	53748928	chr20:53748928:G:A	rs4811457	G	A	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr20	53825686	53825687	chr20:53825687:T:A	rs6022784	T	A	T	Sox3.mouse_HMG_3	6	1	+	3.2720518959919582	-3.478999589189515	GATGAATGATAGGCTTT
chr20	53935344	53935345	chr20:53935345:G:C	rs16998572	G	C	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr20	53940453	53940454	chr20:53940454:G:T	rs147088199	G	T	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr20	53943586	53943587	chr20:53943587:A:G	rs1055253	A	G	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr20	53984549	53984550	chr20:53984550:A:G	rs376991963	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr20	53984592	53984593	chr20:53984593:C:T	rs73140334	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr20	54054592	54054593	chr20:54054593:T:G	rs6022934	T	G	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr20	54130966	54130967	chr20:54130967:C:T	rs2585450	C	T	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr20	54133519	54133520	chr20:54133520:G:A	rs6097779	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr20	54169319	54169320	chr20:54169320:A:G	rs4809959	A	G	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr20	54257569	54257570	chr20:54257570:T:A	rs6023079	T	A	T	Sox3.mouse_HMG_3	5	1	-	2.787401560450254	-3.820039104028458	AATGAATGATGTTCCTC
chr20	54474190	54474191	chr20:54474191:T:A	rs6023270	T	A	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr20	54646876	54646877	chr20:54646877:T:C	rs11907426	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr20	54716216	54716217	chr20:54716217:G:A	rs2143709	G	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr20	54898728	54898729	chr20:54898729:G:A	rs1588602	G	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr20	54985101	54985102	chr20:54985102:G:A	rs6092021	G	A	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr20	55174362	55174363	chr20:55174363:T:C	rs11696349	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr20	55637583	55637584	chr20:55637584:C:A	rs1337233	C	A	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr20	55714880	55714881	chr20:55714881:A:G	rs1018494	A	G	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr20	55782395	55782396	chr20:55782396:A:G	rs7271925	A	G	A	Sox3.mouse_HMG_3	10	1	+	1.716173888759666	-4.89177675278113	CATGAAGGCTATTCGAG
chr20	56106718	56106719	chr20:56106719:A:T	rs6069581	A	T	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr20	56181706	56181707	chr20:56181707:T:G	rs977846004	T	G	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr20	56223447	56223448	chr20:56223448:C:T	rs79876173	C	T	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr20	56356214	56356215	chr20:56356215:C:T	rs6014704	C	T	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr20	56356232	56356233	chr20:56356233:A:G	rs6024820	A	G	A	Sox3.mouse_HMG_3	2	1	-	4.464702675692376	-2.1411764425385544	TATGAACGGTTTTCATT
chr20	56424162	56424163	chr20:56424163:C:G	rs146123258	C	G	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr20	56443475	56443476	chr20:56443476:A:C	rs7266908	A	C	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr20	56818554	56818555	chr20:56818555:A:C	rs34334717	A	C	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr20	56953272	56953273	chr20:56953273:G:A	rs73291993	G	A	G	Sox3.mouse_HMG_3	3	1	+	-0.904661236745725	-6.6862261242749526	CGCGACTGTCAGTCATG
chr20	57036636	57036637	chr20:57036637:G:C	rs1276382	G	C	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr20	57091606	57091607	chr20:57091607:T:G	rs6127935	T	G	T	Sox3.mouse_HMG_3	5	1	-	5.291194640289048	-1.316246024189662	AATGAATGGGAGGCATG
chr20	57091622	57091623	chr20:57091623:T:G	rs6025366	T	G	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr20	57104611	57104612	chr20:57104612:G:T	rs62203917	G	T	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr20	57250636	57250637	chr20:57250637:A:G	rs6070035	A	G	G	Sox3.mouse_HMG_3	15	1	+	8.648063111052657	7.789281764196238	CATGAATGGTGTTCAAA
chr20	57282854	57282855	chr20:57282855:G:A	rs8125534	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr20	57282870	57282871	chr20:57282871:T:A	rs142806231	T	A	T	Sox3.mouse_HMG_3	5	1	-	3.0593624863231077	-3.5480781781556034	TTTGAATGCCAGTCTCG
chr20	57288303	57288304	chr20:57288304:A:G	rs187632082	A	G	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr20	57389104	57389105	chr20:57389105:C:T	rs79357353	C	T	C	Sox3.mouse_HMG_3	5	1	+	-0.08436443695396778	-0.08436443695396778	AATGACTGATTGTCAGG
chr20	57430913	57430914	chr20:57430914:A:G	rs62204192	A	G	a	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr20	57440604	57440605	chr20:57440605:G:A	rs73178566	G	A	g	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr20	57645089	57645090	chr20:57645090:C:A	rs117804220	C	A	C	Sox3.mouse_HMG_3	1	1	+	1.5449327514751738	5.72179226533107	GCTGAATGTTAATCACC
chr20	57881986	57881987	chr20:57881987:A:G	rs967542896	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr20	57924826	57924827	chr20:57924827:T:G	chr20:57924827:T:G	T	G	T	Sox3.mouse_HMG_3	1	1	-	3.1238744832510905	-1.0529850306048025	CATCAATTCCATTCCTG
chr20	57934561	57934562	chr20:57934562:C:T	rs150695099	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr20	57991375	57991376	chr20:57991376:T:C	rs6092579	T	C	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr20	58072054	58072055	chr20:58072055:T:C	rs6015180	T	C	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr20	58213031	58213032	chr20:58213032:G:T	rs6026132	G	T	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr20	58224313	58224314	chr20:58224314:A:G	rs542364437	A	G	A	Sox3.mouse_HMG_3	0	1	+	2.4410111509800076	3.2662950521263507	ACTGAGTGGGATTCATG
chr20	58233356	58233357	chr20:58233357:A:T	rs565110	A	T	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr20	58260667	58260668	chr20:58260668:G:A	rs76479632	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr20	58378613	58378614	chr20:58378614:T:C	rs74423812	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr20	58447926	58447927	chr20:58447927:C:T	rs1387595300	C	T	C	Sox3.mouse_HMG_3	0	1	-	6.700420252013815	5.8751363508674705	GTTAAATGTTATTCAGG
chr20	58580515	58580516	chr20:58580516:T:C	rs998729	T	C	T	Sox3.mouse_HMG_3	11	1	+	0.9295058257557576	-5.155105000346188	CATTAATGTTTTTCAAG
chr20	58688721	58688722	chr20:58688722:A:G	rs13038286	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr20	58726257	58726258	chr20:58726258:T:C	rs2426783	T	C	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr20	58787114	58787115	chr20:58787115:T:C	rs6070600	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr20	58822359	58822360	chr20:58822360:C:G	rs142230159	C	G	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr20	58822369	58822370	chr20:58822370:G:A	rs79424898	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr20	58905311	58905312	chr20:58905312:G:T	rs3730169	G	T	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr20	58992487	58992488	chr20:58992488:A:G	rs184673	A	G	G	Sox3.mouse_HMG_3	6	1	-	0.9481885486241896	-5.659762092916607	AATGAGTGATACTCAGT
chr20	59164413	59164414	chr20:59164414:A:T	rs6026739	A	T	T	Sox3.mouse_HMG_3	1	1	-	3.922712813485475	6.892789621674568	TTTGAATTGTAGTAAAT
chr20	59221795	59221796	chr20:59221796:C:T	rs117436397	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr20	59269549	59269550	chr20:59269550:T:C	rs6026785	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr20	59320357	59320358	chr20:59320358:T:C	rs149768	T	C	C	Sox3.mouse_HMG_3	7	1	+	0.6456355722408971	-4.757775607736423	GAAGAAATTCAGTCAGA
chr20	59425047	59425048	chr20:59425048:C:T	rs11699593	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr20	59455434	59455435	chr20:59455435:A:C	rs905183927	A	C	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr20	59724033	59724034	chr20:59724034:C:T	rs78624401	C	T	C	Sox3.mouse_HMG_3	16	1	-	-0.5710885556331349	-0.6070290120856605	TGTGAAAGGTGTTCAGG
chr20	59751019	59751020	chr20:59751020:G:A	rs76237121	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr20	59814327	59814328	chr20:59814328:T:G	rs6092829	T	G	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr20	59826866	59826867	chr20:59826867:C:T	rs77366541	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr20	59831165	59831166	chr20:59831166:T:C	rs6092831	T	C	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr20	59831179	59831180	chr20:59831180:C:G	rs377231815	C	G	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr20	59941960	59941961	chr20:59941961:A:G	rs6027209	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr20	59972820	59972821	chr20:59972821:T:C	rs2426859	T	C	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr20	60046012	60046013	chr20:60046013:G:A	rs117097324	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr20	60069671	60069672	chr20:60069672:T:C	rs6100701	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr20	60251975	60251976	chr20:60251976:A:G	rs16983715	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr20	60331810	60331811	chr20:60331811:G:T	rs114751515	G	T	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr20	60362112	60362113	chr20:60362113:A:T	rs898688	A	T	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr20	60484281	60484282	chr20:60484282:G:A	rs75009095	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr20	60518173	60518174	chr20:60518174:C:T	rs17801929	C	T	C	Sox3.mouse_HMG_3	16	1	-	1.2341244337056814	1.1981839772531557	AATGAGTTGCTTTCAGG
chr20	60785457	60785458	chr20:60785458:G:A	rs2426915	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr20	60956777	60956778	chr20:60956778:A:C	rs13040840	A	C	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr20	60956826	60956827	chr20:60956827:G:T	rs35955505	G	T	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr20	61062885	61062886	chr20:61062886:G:T	rs2093154	G	T	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr20	61140886	61140887	chr20:61140887:T:C	rs68114568	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr20	61296467	61296468	chr20:61296468:G:T	rs3893279	G	T	G	Sox3.mouse_HMG_3	13	1	-	1.7919368867085115	-4.590699787268864	TATGAATCATGGTCAAA
chr20	61575868	61575869	chr20:61575869:A:G	rs2253219	A	G	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr20	61590948	61590949	chr20:61590949:C:T	rs2243597	C	T	c	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr20	61654294	61654295	chr20:61654295:C:T	rs13040602	C	T	-	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr20	61669147	61669148	chr20:61669148:C:T	rs73148395	C	T	c	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr20	61757881	61757882	chr20:61757882:G:A	rs13040995	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr20	61857847	61857848	chr20:61857848:G:T	rs6142878	G	T	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr20	61941417	61941418	chr20:61941418:A:T	rs57865163	A	T	A	Sox3.mouse_HMG_3	11	1	-	0.4663477631823967	-5.6182630629195485	CGTGCATTGCATGCATG
chr20	61945255	61945256	chr20:61945256:A:G	rs202140862	A	G	g	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr20	61948721	61948722	chr20:61948722:C:G	rs6061391	C	G	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr20	62182160	62182161	chr20:62182161:G:A	rs76572959	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr20	62188340	62188341	chr20:62188341:A:G	rs6121949	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr20	62585889	62585890	chr20:62585890:T:C	rs28707022	T	C	c	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr20	62735371	62735372	chr20:62735372:C:A	rs73918655	C	A	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr20	63019600	63019601	chr20:63019601:G:A	rs114147630	G	A	G	Sox3.mouse_HMG_3	13	1	-	0.22772822770900158	-6.379532382753019	CATCAAAGTTATTCAGG
chr20	63082687	63082688	chr20:63082688:C:T	rs58926663	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr20	63122760	63122761	chr20:63122761:A:G	rs78748903	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr20	63139132	63139133	chr20:63139133:G:A	rs75175692	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr20	63262036	63262037	chr20:63262037:C:T	rs80089062	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr20	63262037	63262038	chr20:63262038:G:A	rs77015723	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr20	63585454	63585455	chr20:63585455:C:T	rs311500	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr20	63596239	63596240	chr20:63596240:G:A	rs1151620	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr20	63596268	63596269	chr20:63596269:G:A	rs58847566	G	A	g	Sox3.mouse_HMG_3	6	1	-	-1.4521567358805612	5.155793905660236	GATGAGCGGCAGCCATG
chr20	63843322	63843323	chr20:63843323:G:A	rs115622739	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr20	64165233	64165234	chr20:64165234:C:T	rs192167175	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr21	6375345	6375346	chr21:6375346:T:C	rs1329261743	T	C	.	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr21	6375356	6375357	chr21:6375357:A:G	rs1388484349	A	G	.	Sox3.mouse_HMG_3	9	1	-	5.967341701704375	5.959705024712629	GTTGAATGGTGGTCAAA
chr21	7955542	7955543	chr21:7955543:C:T	rs1421310927	C	T	.	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr21	7955579	7955580	chr21:7955580:T:A	rs1417244447	T	A	.	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr21	8993171	8993172	chr21:8993172:G:T	rs35253397	G	T	.	Sox3.mouse_HMG_3	9	1	-	1.914582740081739	-4.139635884426579	TATGAATGGCAGAAAGA
chr21	8993182	8993183	chr21:8993183:G:A	rs369774701	G	A	.	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr21	8998363	8998364	chr21:8998364:G:A	rs1843418	G	A	.	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr21	9003237	9003238	chr21:9003238:T:C	rs368545774	T	C	.	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr21	9003246	9003247	chr21:9003247:C:G	rs370205177	C	G	.	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr21	9778988	9778989	chr21:9778989:G:A	rs1229317846	G	A	.	Sox3.mouse_HMG_3	3	1	+	6.471073378756689	0.6895084912274583	GATGAATTGGAGTCAGC
chr21	10021207	10021208	chr21:10021208:T:C	rs867112965	T	C	.	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr21	10417839	10417840	chr21:10417840:G:A	rs7278427	G	A	g	Sox3.mouse_HMG_3	15	1	-	-0.25605912791292873	4.45833428380214	GATGGATACCAGTCACG
chr21	10571883	10571884	chr21:10571884:C:T	rs10881151	C	T	c	Sox3.mouse_HMG_3	7	1	-	0.3797225134901754	-6.173826201167553	CTTGGATGGCAGGCATG
chr21	10685059	10685060	chr21:10685060:C:G	rs111669253	C	G	.	Sox3.mouse_HMG_3	3	1	+	1.7585726170045441	8.508063352709591	AATCAATTCCATTCGAG
chr21	10734450	10734451	chr21:10734451:T:G	rs771280033	T	G	.	Sox3.mouse_HMG_3	4	1	-	2.7982807782501053	-3.9522607298692787	AAGGAATGGTATTGAAA
chr21	10734458	10734459	chr21:10734459:A:G	rs28735724	A	G	.	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr21	13808517	13808518	chr21:13808518:C:T	rs17207852	C	T	.	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr21	14526851	14526852	chr21:14526852:C:G	rs2822742	C	G	G	Sox3.mouse_HMG_3	1	1	-	1.9589267973585767	0.8821972199399739	TGTAATTTTCATTCATG
chr21	14557360	14557361	chr21:14557361:G:C	rs9980490	G	C	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr21	14596014	14596015	chr21:14596015:A:G	rs465122	A	G	G	Sox3.mouse_HMG_3	1	1	+	4.278253616175746	1.1781236797384553	TATGGAGTTCATTCATA
chr21	14711469	14711470	chr21:14711470:C:T	rs148823909	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr21	14712594	14712595	chr21:14712595:C:G	rs3859697	C	G	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr21	14753237	14753238	chr21:14753238:T:C	rs2822900	T	C	C	Sox3.mouse_HMG_3	15	1	+	1.7271326485926664	-2.9872607631224017	TATGAATTCCAGACTTC
chr21	14772330	14772331	chr21:14772331:T:C	rs13046559	T	C	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr21	15016116	15016117	chr21:15016117:G:T	rs17306819	G	T	G	Sox3.mouse_HMG_3	3	1	-	2.0385066836911188	3.0064325318669374	AATCAAATACAGTCATG
chr21	15016129	15016130	chr21:15016130:C:G	rs77752902	C	G	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr21	15030485	15030486	chr21:15030486:A:G	rs74409708	A	G	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr21	15037567	15037568	chr21:15037568:G:T	rs2248589	G	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr21	15306832	15306833	chr21:15306833:A:G	rs982774	A	G	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr21	15566962	15566963	chr21:15566963:G:A	rs2065236	G	A	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr21	15848635	15848636	chr21:15848636:C:T	rs140598237	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr21	15858086	15858087	chr21:15858087:C:G	rs78470636	C	G	C	Sox3.mouse_HMG_3	0	1	-	1.613103444937396	-0.11068805419922267	GATCACTGGTATTCAGT
chr21	16087186	16087187	chr21:16087187:C:T	rs2823608	C	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr21	16190948	16190949	chr21:16190949:C:A	rs2051347	C	A	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr21	16242059	16242060	chr21:16242060:A:G	rs116857695	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr21	16370009	16370010	chr21:16370010:A:G	rs2823756	A	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr21	16439694	16439695	chr21:16439695:T:C	rs57190849	T	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr21	16464417	16464418	chr21:16464418:G:C	rs61549904	G	C	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr21	16624668	16624669	chr21:16624669:A:T	rs79910324	A	T	A	Sox3.mouse_HMG_3	10	1	+	4.000222749223526	-2.7508287359579446	AGTGCATTACATTCAGG
chr21	16829846	16829847	chr21:16829847:C:G	rs2037944	C	G	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr21	16830685	16830686	chr21:16830686:A:G	rs2223075	A	G	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr21	17673821	17673822	chr21:17673822:C:A	rs2824441	C	A	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr21	17883352	17883353	chr21:17883353:C:G	rs2824532	C	G	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr21	18472986	18472987	chr21:18472987:G:A	rs2824843	G	A	A	Sox3.mouse_HMG_3	0	1	+	2.9147701234260346	2.0894862222796915	GATGAATTCCATTAGAA
chr21	18588424	18588425	chr21:18588425:T:C	rs1735742	T	C	T	Sox3.mouse_HMG_3	1	1	-	4.128905580852898	1.028775644415607	TATGAATGTTGTTCCTT
chr21	18717087	18717088	chr21:18717088:T:C	rs2210241	T	C	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr21	18971065	18971066	chr21:18971066:T:C	rs465710	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr21	19176813	19176814	chr21:19176814:G:A	rs17785716	G	A	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr21	19235142	19235143	chr21:19235143:T:C	rs8133706	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr21	19296036	19296037	chr21:19296037:T:C	rs7280348	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr21	19824293	19824294	chr21:19824294:C:G	rs2825822	C	G	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr21	20207705	20207706	chr21:20207706:A:T	rs951076	A	T	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr21	20732376	20732377	chr21:20732377:C:G	rs2826494	C	G	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr21	21713868	21713869	chr21:21713869:A:G	rs559312039	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr21	21757005	21757006	chr21:21757006:A:G	rs2827008	A	G	A	Sox3.mouse_HMG_3	1	1	-	1.6505339266703942	0.44375122100359254	GTTGCACTCCATTCATG
chr21	21789029	21789030	chr21:21789030:A:G	rs34273942	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr21	21833487	21833488	chr21:21833488:G:A	rs972672	G	A	G	Sox3.mouse_HMG_3	16	1	-	3.5794607784835173	4.446387517955796	CATGAAGTATAGTCAAC
chr21	21859588	21859589	chr21:21859589:T:C	rs2253984	T	C	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr21	22020413	22020414	chr21:22020414:G:A	rs28713311	G	A	-	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr21	22248552	22248553	chr21:22248553:A:G	rs138890202	A	G	A	Sox3.mouse_HMG_3	9	1	-	5.174295002893667	5.166658325901921	TATCAATGTTATTCCTG
chr21	23184910	23184911	chr21:23184911:C:G	rs77855641	C	G	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr21	23184949	23184950	chr21:23184950:G:T	rs171976	G	T	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr21	23498859	23498860	chr21:23498860:C:G	rs62208226	C	G	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr21	23539339	23539340	chr21:23539340:A:C	rs11087875	A	C	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr21	23736276	23736277	chr21:23736277:T:G	rs13046096	T	G	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr21	24045968	24045969	chr21:24045969:C:T	rs1995509	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr21	24045992	24045993	chr21:24045993:G:A	rs9978742	G	A	G	Sox3.mouse_HMG_3	7	1	+	3.510605500684668	-3.0429432139730617	AATGCAGGGCAGTCATG
chr21	24113470	24113471	chr21:24113471:T:A	rs1699685	T	A	t	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr21	24119229	24119230	chr21:24119230:A:G	rs1699674	A	G	g	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr21	24219038	24219039	chr21:24219039:G:A	rs1910614	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr21	24406817	24406818	chr21:24406818:G:A	rs2829045	G	A	-	Sox3.mouse_HMG_3	3	1	+	3.2042304445100314	-2.5773344430191987	TATGAACTGTAATCAAG
chr21	24659043	24659044	chr21:24659044:T:C	rs1034338	T	C	N	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr21	25105436	25105437	chr21:25105437:C:G	rs9977187	C	G	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr21	25114966	25114967	chr21:25114967:T:G	rs2829544	T	G	G	Sox3.mouse_HMG_3	3	1	+	1.8815029348814536	8.787997419396167	AATTAAATACAGTCATG
chr21	25340589	25340590	chr21:25340590:A:T	rs62222165	A	T	A	Sox3.mouse_HMG_3	2	1	-	5.912913192393712	0.18558447805408818	AATGAAATACATTCAGT
chr21	25574087	25574088	chr21:25574088:C:T	rs190708267	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr21	25657427	25657428	chr21:25657428:C:G	rs2829850	C	G	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr21	25736284	25736285	chr21:25736285:T:C	rs61304969	T	C	T	Sox3.mouse_HMG_3	1	1	-	3.87418868210751	0.7740587456702175	AATGAATTTTATTTCTA
chr21	25834305	25834306	chr21:25834306:G:A	rs2226329	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr21	25837601	25837602	chr21:25837602:A:G	rs9982115	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr21	25998080	25998081	chr21:25998081:C:T	rs2070656	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr21	26071003	26071004	chr21:26071004:C:T	rs12626415	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr21	26086092	26086093	chr21:26086093:A:G	rs2830045	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr21	26463611	26463612	chr21:26463612:G:A	rs114447013	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr21	26463614	26463615	chr21:26463615:C:A	rs116538073	C	A	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr21	26482701	26482702	chr21:26482702:A:G	rs62216506	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr21	26756019	26756020	chr21:26756020:G:T	rs2830469	G	T	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr21	26838774	26838775	chr21:26838775:A:G	rs229043	A	G	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr21	26948582	26948583	chr21:26948583:C:G	rs34609314	C	G	C	Sox3.mouse_HMG_3	8	1	+	0.5371602052705619	0.9799428739484942	CATGAGCTCCAGTCATT
chr21	27056255	27056256	chr21:27056256:T:C	rs2088379	T	C	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr21	27101713	27101714	chr21:27101714:C:T	rs2830689	C	T	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr21	27102226	27102227	chr21:27102227:T:C	rs12710375	T	C	T	Sox3.mouse_HMG_3	5	1	-	1.0610147075633727	-5.427820214507491	GGTGAATATCAGTCCTA
chr21	27112743	27112744	chr21:27112744:C:T	rs8126792	C	T	C	Sox3.mouse_HMG_3	16	1	-	6.675615506870543	6.639675050418018	AATGAATTATAGTTAAG
chr21	27321684	27321685	chr21:27321685:T:C	rs239710	T	C	C	Sox3.mouse_HMG_3	16	1	-	2.4936109014137164	2.529551357866242	TATGTAAGGTATTCAGA
chr21	27445516	27445517	chr21:27445517:A:G	rs11701365	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr21	27531659	27531660	chr21:27531660:G:C	rs117321218	G	C	G	Sox3.mouse_HMG_3	13	1	-	2.3339231311678477	-4.273337479294172	AAAGAATTGCACTCAAT
chr21	27691717	27691718	chr21:27691718:A:G	rs2831090	A	G	A	Sox3.mouse_HMG_3	11	1	-	3.4041217496382608	-2.680489076463684	GATGAGTGTTATTCTAA
chr21	27949253	27949254	chr21:27949254:A:G	rs144530109	A	G	a	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr21	28180452	28180453	chr21:28180453:T:C	rs2831614	T	C	T	Sox3.mouse_HMG_3	14	1	-	5.746589013172035	-0.6353571532548751	TCTGATTTCTATTCATT
chr21	28196128	28196129	chr21:28196129:C:T	rs114443153	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr21	28224529	28224530	chr21:28224530:G:T	rs2831668	G	T	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr21	28427277	28427278	chr21:28427278:T:C	rs2831799	T	C	T	Sox3.mouse_HMG_3	15	1	+	2.0512715367674588	-2.6631218749476098	TTTGCATTGCATGCATG
chr21	28654727	28654728	chr21:28654728:A:G	rs118070407	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr21	28744390	28744391	chr21:28744391:A:G	rs2832044	A	G	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr21	28744430	28744431	chr21:28744431:T:C	rs2832045	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr21	28811902	28811903	chr21:28811903:A:C	rs2205442	A	C	A	Sox3.mouse_HMG_3	14	1	-	2.471603575469559	2.471603575469559	GATGAATTTTATTTTAG
chr21	28885069	28885070	chr21:28885070:G:C	rs112161401	G	C	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr21	28885095	28885096	chr21:28885096:G:A	rs1997605	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr21	28885104	28885105	chr21:28885105:G:T	rs182936245	G	T	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr21	29133658	29133659	chr21:29133659:G:A	rs76276670	G	A	g	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr21	29176646	29176647	chr21:29176647:C:A	rs7364112	C	A	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr21	29233531	29233532	chr21:29233532:A:C	rs12482584	A	C	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr21	29313241	29313242	chr21:29313242:C:T	rs2832281	C	T	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr21	29316748	29316749	chr21:29316749:G:T	rs1153291	G	T	T	Sox3.mouse_HMG_3	13	1	-	2.880020645904721	-3.502616028072656	TATGACCTACAGTCATG
chr21	29342276	29342277	chr21:29342277:G:A	rs411697	G	A	G	Sox3.mouse_HMG_3	3	1	-	4.539875506383929	4.382871757574264	TTTCAATTCCATTCAAT
chr21	29465513	29465514	chr21:29465514:C:T	rs146530540	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr21	29550343	29550344	chr21:29550344:A:G	rs9305399	A	G	G	Sox3.mouse_HMG_3	10	1	+	2.8363534315851284	-3.7715972099556696	ATTGAATGCCAAACATG
chr21	29627285	29627286	chr21:29627286:A:T	rs17831620	A	T	A	Sox3.mouse_HMG_3	10	1	+	1.9395819256740092	-4.8114695595074615	TTTGAATTCCATTACTA
chr21	29827474	29827475	chr21:29827475:G:T	rs548005005	G	T	G	Sox3.mouse_HMG_3	8	1	+	2.3670670345385973	1.6621646209445589	GCTGTATGGCACTCATA
chr21	29922698	29922699	chr21:29922699:T:C	rs460091	T	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr21	30673033	30673034	chr21:30673034:T:C	rs992875	T	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr21	31072498	31072499	chr21:31072499:A:C	rs2070407	A	C	A	Sox3.mouse_HMG_3	2	1	-	4.609003527473912	-2.1399764343976897	TATGACTGGTATTTATT
chr21	31087643	31087644	chr21:31087644:T:C	rs71321368	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr21	31222173	31222174	chr21:31222174:C:T	rs77926910	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr21	31284076	31284077	chr21:31284077:T:C	rs139658105	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr21	31352421	31352422	chr21:31352422:A:G	rs9647143	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr21	31424375	31424376	chr21:31424376:T:G	rs79234510	T	G	T	Sox3.mouse_HMG_3	0	1	+	0.6206052768810404	0.8895261306807936	TGTGGATGCCATCCAAG
chr21	31492386	31492387	chr21:31492387:C:T	rs2154515	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr21	31495498	31495499	chr21:31495499:C:T	rs4816399	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr21	31629892	31629893	chr21:31629893:C:A	rs55867217	C	A	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr21	31641634	31641635	chr21:31641635:T:A	rs111497183	T	A	T	Sox3.mouse_HMG_3	10	1	-	1.061859399927129	-5.689192085254342	CGTGAATGACATGCCTG
chr21	31675004	31675005	chr21:31675005:T:C	rs2833476	T	C	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr21	31793420	31793421	chr21:31793421:G:A	rs1057375650	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr21	31931933	31931934	chr21:31931934:A:G	rs57560507	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr21	31994839	31994840	chr21:31994840:G:A	rs9981748	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr21	31997333	31997334	chr21:31997334:G:T	rs9985101	G	T	G	Sox3.mouse_HMG_3	0	1	+	3.837819375143327	3.568898521343573	GATGGATGATATTCTTC
chr21	32030272	32030273	chr21:32030273:A:T	rs113972467	A	T	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr21	32098316	32098317	chr21:32098317:T:C	rs2833652	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr21	32340216	32340217	chr21:32340217:T:C	rs2833776	T	C	T	Sox3.mouse_HMG_3	5	1	-	1.394091574369039	-5.094743347701826	CATGCATTATTTTCATT
chr21	32423891	32423892	chr21:32423892:T:C	rs2833805	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr21	32427263	32427264	chr21:32427264:C:T	rs2833817	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr21	32514675	32514676	chr21:32514676:T:C	rs2833863	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr21	32537811	32537812	chr21:32537812:T:C	rs2833867	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr21	32585233	32585234	chr21:32585234:C:T	rs2833917	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr21	33086465	33086466	chr21:33086466:A:G	rs58912052	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr21	33199288	33199289	chr21:33199289:T:G	rs73903125	T	G	T	Sox3.mouse_HMG_3	5	1	-	4.121527638456715	-2.4859130260219953	GGTGAATTGCAGTTAGA
chr21	33215544	33215545	chr21:33215545:T:C	rs561315240	T	C	T	Sox3.mouse_HMG_3	11	1	+	10.203556129797526	4.118945303695581	ACTGAATGATATTCAAT
chr21	33371932	33371933	chr21:33371933:G:A	rs17711780	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr21	33374803	33374804	chr21:33374804:G:A	rs75476373	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr21	33374829	33374830	chr21:33374830:C:A	rs372523274	C	A	C	Sox3.mouse_HMG_3	12	1	+	0.7308693884073378	0.8109120960808742	TTTGAATTCCAGCCCTG
chr21	33495777	33495778	chr21:33495778:A:G	rs9975975	A	G	G	Sox3.mouse_HMG_3	8	1	-	1.594982417858618	1.857102162774724	TAAGGATGTCAGTCAGA
chr21	33655383	33655384	chr21:33655384:G:A	rs2070392	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr21	33894712	33894713	chr21:33894713:C:T	rs77596640	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr21	33924256	33924257	chr21:33924257:A:G	rs75422120	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr21	33962797	33962798	chr21:33962798:G:A	rs7283594	G	A	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr21	33981087	33981088	chr21:33981088:A:T	rs62226717	A	T	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr21	34541669	34541670	chr21:34541670:C:T	rs2040122	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr21	34574646	34574647	chr21:34574647:C:G	rs8132211	C	G	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr21	34645472	34645473	chr21:34645473:T:G	rs7283671	T	G	G	Sox3.mouse_HMG_3	5	1	-	3.9925175523041654	-2.6149231121745453	AATGAATTCTCTTCTTA
chr21	34872300	34872301	chr21:34872301:C:A	rs73201074	C	A	A	Sox3.mouse_HMG_3	15	1	-	1.5232120857746	4.645802896867842	CATGAATGTCACACAGG
chr21	34906644	34906645	chr21:34906645:A:G	rs1475840	A	G	A	Sox3.mouse_HMG_3	8	1	+	6.991766881504009	7.614883528681823	TTTGAATTACATGCATT
chr21	34906667	34906668	chr21:34906668:C:T	rs1011174187	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr21	34927464	34927465	chr21:34927465:T:C	rs55677152	T	C	T	Sox3.mouse_HMG_3	6	1	+	0.5952866576828539	-6.0126639838579425	GGTGAGTGCCATGCAAG
chr21	34997148	34997149	chr21:34997149:C:T	rs73900767	C	T	T	Sox3.mouse_HMG_3	15	1	+	2.0451294304225667	6.759522842137635	CTTAAATTGCATTCACT
chr21	35072926	35072927	chr21:35072927:G:T	rs17227266	G	T	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr21	35096879	35096880	chr21:35096880:C:T	rs984659	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr21	35098780	35098781	chr21:35098781:T:C	rs2834761	T	C	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr21	35202536	35202537	chr21:35202537:A:T	rs16992935	A	T	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr21	35222217	35222218	chr21:35222218:C:T	rs116806169	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr21	35234597	35234598	chr21:35234598:C:T	rs62217047	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr21	35266817	35266818	chr21:35266818:C:T	chr21:35266818:C:T	C	T	C	Sox3.mouse_HMG_3	9	1	+	0.6762808058461078	0.6839174828378556	TATGAATGACATTGCCG
chr21	35266823	35266824	chr21:35266824:C:T	rs558316982	C	T	C	Sox3.mouse_HMG_3	15	1	+	0.6762808058461078	5.390674217561176	TATGAATGACATTGCCG
chr21	35346777	35346778	chr21:35346778:T:C	rs2834916	T	C	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr21	35346788	35346789	chr21:35346789:A:G	rs13050967	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr21	35480297	35480298	chr21:35480298:G:T	rs560067133	G	T	G	Sox3.mouse_HMG_3	0	1	+	4.473978085202054	4.2050572314023	GATGATTTTTATTTATA
chr21	35520650	35520651	chr21:35520651:T:C	rs374148	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr21	35556774	35556775	chr21:35556775:A:T	rs2834975	A	T	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr21	35564485	35564486	chr21:35564486:A:C	rs62218716	A	C	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr21	35564492	35564493	chr21:35564493:G:A	rs77053502	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr21	35943981	35943982	chr21:35943982:G:A	rs1467366	G	A	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr21	35943982	35943983	chr21:35943983:T:C	rs1467365	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr21	36023002	36023003	chr21:36023003:T:C	rs4817760	T	C	T	Sox3.mouse_HMG_3	9	1	+	4.361709514062834	4.354072837071088	AATAAATCATAGTCATG
chr21	36023015	36023016	chr21:36023016:C:G	rs762362	C	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr21	36079191	36079192	chr21:36079192:A:G	rs775033887	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr21	36218105	36218106	chr21:36218106:A:G	rs138780067	A	G	A	Sox3.mouse_HMG_3	6	1	-	-0.2976586714787526	-6.90560931301955	ACTGAATGGCCGTCCTG
chr21	36330500	36330501	chr21:36330501:T:G	rs560155336	T	G	T	Sox3.mouse_HMG_3	12	1	+	3.641057507063963	-2.740017339257947	AATGTATTTCATTGATA
chr21	36481023	36481024	chr21:36481024:G:C	rs115270476	G	C	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr21	36500424	36500425	chr21:36500425:T:G	rs76415705	T	G	T	Sox3.mouse_HMG_3	15	1	+	4.260066972666032	1.137476161572791	GATACATTCCATTCATT
chr21	36538301	36538302	chr21:36538302:A:G	rs9305591	A	G	g	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr21	36566430	36566431	chr21:36566431:C:T	rs377239	C	T	C	Sox3.mouse_HMG_3	3	1	-	2.6821249276896983	-3.0994399598395352	TGAGATTTGCATTCATA
chr21	36679953	36679954	chr21:36679954:T:A	rs1571699	T	A	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr21	36889500	36889501	chr21:36889501:G:C	rs116465372	G	C	G	Sox3.mouse_HMG_3	13	1	-	7.122771817502448	0.5155112070404271	GATAAATGATAGTCAAC
chr21	36985974	36985975	chr21:36985975:G:A	rs58844217	G	A	g	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr21	36992684	36992685	chr21:36992685:G:A	rs2187102	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr21	37140140	37140141	chr21:37140141:A:T	rs2835625	A	T	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr21	37208007	37208008	chr21:37208008:A:G	rs7277820	A	G	G	Sox3.mouse_HMG_3	1	1	-	2.2510975402920637	1.044314834625263	CTAGAATGGTATTTATG
chr21	37476243	37476244	chr21:37476244:C:T	rs62222285	C	T	c	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr21	37507502	37507503	chr21:37507503:A:C	rs7281199	A	C	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr21	37507552	37507553	chr21:37507553:C:A	rs117924726	C	A	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr21	37557655	37557656	chr21:37557656:C:T	rs34271447	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr21	37642499	37642500	chr21:37642500:A:G	rs73222314	A	G	N	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr21	37799485	37799486	chr21:37799486:G:C	rs2835965	G	C	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr21	37828132	37828133	chr21:37828133:G:C	rs2835995	G	C	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr21	37994223	37994224	chr21:37994224:T:C	rs2836101	T	C	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr21	38080575	38080576	chr21:38080576:C:T	rs2836140	C	T	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr21	38277827	38277828	chr21:38277828:T:G	rs78742532	T	G	T	Sox3.mouse_HMG_3	14	1	-	1.4271626600692475	-4.954783506357663	AATGAATGAAGGTCAAA
chr21	38288446	38288447	chr21:38288447:C:T	rs2836290	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr21	38310596	38310597	chr21:38310597:C:G	rs73423919	C	G	C	Sox3.mouse_HMG_3	7	1	-	12.854031872548237	6.600587750340847	GATGAATGGCATTCTTA
chr21	38310610	38310611	chr21:38310611:G:A	rs9636933	G	A	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr21	38323746	38323747	chr21:38323747:T:A	rs147856762	T	A	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr21	38497002	38497003	chr21:38497003:T:C	rs2226683	T	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr21	38499620	38499621	chr21:38499621:G:C	rs76578877	G	C	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr21	38544322	38544323	chr21:38544323:T:C	rs2836497	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr21	38592940	38592941	chr21:38592941:T:A	rs13052090	T	A	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr21	38592942	38592943	chr21:38592943:C:T	rs13051259	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr21	38729527	38729528	chr21:38729528:A:T	rs2836647	A	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr21	38756796	38756797	chr21:38756797:T:C	rs13052279	T	C	C	Sox3.mouse_HMG_3	7	1	+	4.208175878551476	-1.1952353014258434	TATGAGGTTCATTCATG
chr21	38784642	38784643	chr21:38784643:G:A	rs1209922	G	A	G	Sox3.mouse_HMG_3	12	1	-	4.437398760157845	10.630252327558612	AATGAATGGCAGCCTTG
chr21	38784665	38784666	chr21:38784666:G:A	rs1209923	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr21	39015026	39015027	chr21:39015027:A:T	rs75454551	A	T	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr21	39125814	39125815	chr21:39125815:T:C	rs7510385	T	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr21	39151099	39151100	chr21:39151100:T:C	rs9305667	T	C	T	Sox3.mouse_HMG_3	10	1	-	2.3698902620528477	-4.2380603794879494	GATTAAAGACAGTCATT
chr21	39182634	39182635	chr21:39182635:G:A	rs73221192	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr21	39406255	39406256	chr21:39406256:C:T	rs11558767	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr21	39556608	39556609	chr21:39556609:A:G	rs2837076	A	G	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr21	39576140	39576141	chr21:39576141:G:A	rs551439	G	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr21	39598256	39598257	chr21:39598257:G:T	rs663956	G	T	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr21	39806208	39806209	chr21:39806209:C:G	rs378814	C	G	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr21	39942164	39942165	chr21:39942165:C:T	rs11910451	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr21	39955661	39955662	chr21:39955662:A:G	rs60357191	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.0648710111925297	-1.035258925244763	CATGGATTACAGCCATG
chr21	39983220	39983221	chr21:39983221:T:C	rs741774	T	C	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr21	40146473	40146474	chr21:40146474:T:G	rs2837456	T	G	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr21	40146927	40146928	chr21:40146928:A:G	rs2837459	A	G	G	Sox3.mouse_HMG_3	8	1	+	6.18936488055553	6.812481527733343	ACTGAATTACATTTATG
chr21	40146949	40146950	chr21:40146950:T:C	rs2837460	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr21	40516350	40516351	chr21:40516351:G:A	rs138537827	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr21	40534673	40534674	chr21:40534674:G:T	rs16999939	G	T	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr21	40547495	40547496	chr21:40547496:T:C	rs2837696	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr21	40641295	40641296	chr21:40641296:A:C	rs9980127	A	C	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr21	40641334	40641335	chr21:40641335:A:G	rs9980140	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr21	41099155	41099156	chr21:41099156:T:A	rs4239812	T	A	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr21	41111101	41111102	chr21:41111102:C:T	rs56767850	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr21	41160147	41160148	chr21:41160148:C:A	rs7276900	C	A	A	Sox3.mouse_HMG_3	16	1	-	4.389537054102272	3.20260753789725	AATGTATTGTATTTATG
chr21	41209473	41209474	chr21:41209474:G:A	rs117710348	G	A	G	Sox3.mouse_HMG_3	7	1	+	0.3158988859158345	-6.237649828741893	AAGGAATGCCAGTCTGG
chr21	41209497	41209498	chr21:41209498:C:T	rs746063	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr21	41210592	41210593	chr21:41210593:A:G	rs2410407	A	G	g	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr21	41245828	41245829	chr21:41245829:A:G	rs2837985	A	G	A	Sox3.mouse_HMG_3	4	1	-	0.9894401997063356	0.8463393560656631	TGTGTAGTTCATTCATG
chr21	41433194	41433195	chr21:41433195:C:T	rs458939	C	T	T	Sox3.mouse_HMG_3	11	1	-	1.9753421492854017	-2.6748325765207364	TTTGCATTTCAGTCAAC
chr21	41483307	41483308	chr21:41483308:C:T	rs9976780	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr21	41565374	41565375	chr21:41565375:C:G	rs2838066	C	G	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr21	41609475	41609476	chr21:41609476:A:G	rs13049357	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr21	41691253	41691254	chr21:41691254:A:T	rs73216946	A	T	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr21	41705197	41705198	chr21:41705198:T:C	rs11701738	T	C	T	Sox3.mouse_HMG_3	12	1	-	0.7390238864068721	0.47075989981219224	GTTGAAGGCTATACAAG
chr21	42007430	42007431	chr21:42007431:C:T	rs7278166	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr21	42048257	42048258	chr21:42048258:T:G	rs2839456	T	G	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr21	42063114	42063115	chr21:42063115:C:T	rs8128195	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr21	42195448	42195449	chr21:42195449:G:A	rs8131660	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr21	42195459	42195460	chr21:42195460:G:T	rs113637965	G	T	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr21	42195489	42195490	chr21:42195490:G:C	rs544719205	G	C	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr21	42207556	42207557	chr21:42207557:C:A	rs73225417	C	A	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr21	42226214	42226215	chr21:42226215:G:C	rs187470640	G	C	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr21	42255183	42255184	chr21:42255184:C:T	rs225377	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr21	42438380	42438381	chr21:42438381:C:T	rs116989574	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr21	42438381	42438382	chr21:42438382:G:A	rs1893593	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr21	42516438	42516439	chr21:42516439:T:C	rs74516908	T	C	T	Sox3.mouse_HMG_3	15	1	+	0.7292959214951851	-3.985097490219883	AGAGCATGTCAGTCATG
chr21	42585223	42585224	chr21:42585224:T:C	rs1788414	T	C	C	Sox3.mouse_HMG_3	4	1	+	5.975887717055386	5.832786873414713	GATGTATCCTATTCATG
chr21	42607810	42607811	chr21:42607811:C:T	rs73908237	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr21	42612862	42612863	chr21:42612863:A:T	rs374651	A	T	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr21	42614298	42614299	chr21:42614299:A:C	rs147724643	A	C	A	Sox3.mouse_HMG_3	14	1	+	9.551227300285206	3.169281133858295	AATAAATTGCATTCAAG
chr21	42722435	42722436	chr21:42722436:C:T	rs184802701	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr21	42748880	42748881	chr21:42748881:C:T	rs17115411	C	T	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr21	42837277	42837278	chr21:42837278:G:A	rs11203160	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr21	42844411	42844412	chr21:42844412:T:C	rs3746935	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr21	42973588	42973589	chr21:42973589:G:T	rs144981423	G	T	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr21	42976840	42976841	chr21:42976841:C:T	rs415763	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr21	43277979	43277980	chr21:43277980:C:T	chr21:43277980:C:T	C	T	.	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr21	43308473	43308474	chr21:43308474:A:G	rs546428	A	G	.	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr21	43358433	43358434	chr21:43358434:G:A	rs1475879	G	A	.	Sox3.mouse_HMG_3	1	1	+	0.6930996272553318	3.793229563692623	GGTGAATTGCATCCCTC
chr21	43812512	43812513	chr21:43812513:C:T	rs1048179336	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr21	44054240	44054241	chr21:44054241:G:A	rs1042119374	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr21	44335852	44335853	chr21:44335853:C:T	rs147855042	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr21	44454360	44454361	chr21:44454361:C:T	rs2186932	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr21	44479974	44479975	chr21:44479975:C:A	rs60036065	C	A	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr21	44845584	44845585	chr21:44845585:T:C	rs56399780	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr21	44867639	44867640	chr21:44867640:T:C	rs189287	T	C	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr21	44867664	44867665	chr21:44867665:C:T	rs2838721	C	T	C	Sox3.mouse_HMG_3	1	1	-	7.5583246777963256	10.658454614233616	CGTGAATGTCAGTCACA
chr21	44990116	44990117	chr21:44990117:A:C	rs115043955	A	C	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr21	44990154	44990155	chr21:44990155:C:T	rs36221483	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr21	45054742	45054743	chr21:45054743:G:A	rs55701646	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr21	45064696	45064697	chr21:45064697:T:C	rs72613652	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr21	45084122	45084123	chr21:45084123:C:G	rs2838773	C	G	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr21	45143904	45143905	chr21:45143905:C:T	rs13047590	C	T	T	Sox3.mouse_HMG_3	11	1	-	1.3646378619427069	-3.285536863863431	GATGAACTGCCGTCAAG
chr21	45254444	45254445	chr21:45254445:G:A	rs35064782	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr21	45431103	45431104	chr21:45431104:C:T	rs78754819	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr21	45508124	45508125	chr21:45508125:G:A	rs73370874	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr21	45527429	45527430	chr21:45527430:T:C	rs372709774	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr21	45527454	45527455	chr21:45527455:A:G	rs377378680	A	G	A	Sox3.mouse_HMG_3	14	1	+	-1.0669268418702977	-7.448873008297208	GGTGAGTGGCAGCCAGG
chr21	45527650	45527651	chr21:45527651:T:C	rs10522693	T	C	a	Sox3.mouse_HMG_3	12	1	+	3.9389972093254464	-2.2538563580753195	GGTGAGTGGCAGTCAGT
chr21	45553533	45553534	chr21:45553534:C:T	rs1035184202	C	T	C	Sox3.mouse_HMG_3	1	1	-	2.064277132437744	5.164407068875034	TGTGAATGTCCTTAATG
chr21	45580683	45580684	chr21:45580684:A:G	rs9982738	A	G	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr21	45584774	45584775	chr21:45584775:T:C	rs11700708	T	C	C	Sox3.mouse_HMG_3	14	1	-	1.9263395075006218	-4.455606658926289	CAAGAATGACATACAGA
chr21	45610992	45610993	chr21:45610993:G:A	rs35965307	G	A	g	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr21	45748422	45748423	chr21:45748423:C:T	rs117296616	C	T	c	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr21	45763981	45763982	chr21:45763982:A:G	rs3367	A	G	A	Sox3.mouse_HMG_3	12	1	+	9.215207560117559	8.94694357352288	TTTGAATGTCATACATG
chr21	45867505	45867506	chr21:45867506:C:T	rs535284653	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr21	45867538	45867539	chr21:45867539:C:T	rs3788219	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr21	46185420	46185421	chr21:46185421:C:T	rs12482934	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr21	46381351	46381352	chr21:46381352:A:C	rs145218324	A	C	A	Sox3.mouse_HMG_3	15	1	-	2.597215375305268	-0.5253754357879739	AAGGAATTACAGCCATG
chr21	46475503	46475504	chr21:46475504:C:T	rs2839276	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr21	46540633	46540634	chr21:46540634:G:A	rs9306157	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr21	46566087	46566088	chr21:46566088:T:G	rs2277827	T	G	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr21	46606529	46606530	chr21:46606530:T:A	rs2839366	T	A	T	Sox3.mouse_HMG_3	15	1	+	1.9044429112474066	-0.35936655298941456	TTTGAAATCCACTCATG
chr22	10716901	10716902	chr22:10716902:C:T	rs1253256349	C	T	.	Sox3.mouse_HMG_3	8	1	+	1.4293127200213407	1.1671929751052348	AATCAATGCTATTCCAT
chr22	10717059	10717060	chr22:10717060:G:C	chr22:10717060:G:C	G	C	.	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr22	10717061	10717062	chr22:10717062:C:T	rs878919857	C	T	.	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr22	10721715	10721716	chr22:10721716:C:G	rs1227534642	C	G	.	Sox3.mouse_HMG_3	9	1	-	1.4347674821034355	6.774696489477998	AATGGATTTGAGTCAAA
chr22	10773036	10773037	chr22:10773037:G:A	rs1262352817	G	A	.	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr22	11612612	11612613	chr22:11612613:G:T	rs879142869	G	T	.	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr22	15636846	15636847	chr22:15636847:G:A	rs715491	G	A	.	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr22	15815075	15815076	chr22:15815076:C:G	rs7291414	C	G	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr22	15937055	15937056	chr22:15937056:A:T	rs1384470218	A	T	.	Sox3.mouse_HMG_3	1	1	+	0.8577526214883464	-2.1123241867007487	AAAGAATGTTAGTGAGG
chr22	16929237	16929238	chr22:16929238:C:T	rs5994093	C	T	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr22	16953630	16953631	chr22:16953631:T:C	rs5748762	T	C	T	Sox3.mouse_HMG_3	0	1	+	5.254062652461514	3.7991920071246508	TCTGAATCTTAGTCATT
chr22	17162952	17162953	chr22:17162953:G:A	rs5994187	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr22	17181031	17181032	chr22:17181032:C:G	rs7289697	C	G	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr22	17284614	17284615	chr22:17284615:G:A	rs5749010	G	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr22	17329592	17329593	chr22:17329593:A:G	rs5992665	A	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr22	17350550	17350551	chr22:17350551:T:C	rs5994287	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr22	17350558	17350559	chr22:17350559:C:A	rs76076841	C	A	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr22	17364039	17364040	chr22:17364040:T:G	rs9606701	T	G	G	Sox3.mouse_HMG_3	9	1	+	0.35541513838723193	-4.992150545979078	CATGAAGGGTTGTCAAG
chr22	17377130	17377131	chr22:17377131:C:T	rs147379315	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr22	17465485	17465486	chr22:17465486:G:A	rs66526912	G	A	a	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr22	17472018	17472019	chr22:17472019:G:A	rs5747193	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr22	17486614	17486615	chr22:17486615:A:G	rs1040297256	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr22	17536818	17536819	chr22:17536819:A:G	rs174335	A	G	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr22	17542070	17542071	chr22:17542071:A:G	rs1296795	A	G	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr22	17834328	17834329	chr22:17834329:T:C	rs453005	T	C	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr22	17853441	17853442	chr22:17853442:A:C	rs377074467	A	C	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr22	17861192	17861193	chr22:17861193:G:A	rs997458	G	A	G	Sox3.mouse_HMG_3	9	1	-	4.701911897160725	4.709548574152471	GTAGAATTTCATTCAAC
chr22	18036233	18036234	chr22:18036234:T:C	rs9604826	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr22	18145947	18145948	chr22:18145948:C:T	rs361534	C	T	.	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr22	18150678	18150679	chr22:18150679:G:A	rs5993013	G	A	.	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr22	19014495	19014496	chr22:19014496:G:T	rs56157180	G	T	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr22	19063848	19063849	chr22:19063849:G:A	rs5993489	G	A	G	Sox3.mouse_HMG_3	2	1	-	0.33266477488531576	6.938543893116246	ACCGAGTTGTATTCATG
chr22	19063867	19063868	chr22:19063868:T:C	rs2238748	T	C	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr22	19083866	19083867	chr22:19083867:C:T	rs71328286	C	T	c	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr22	19443872	19443873	chr22:19443873:T:C	rs756649	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr22	19511163	19511164	chr22:19511164:A:T	rs9606043	A	T	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr22	19528254	19528255	chr22:19528255:A:G	rs113850893	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr22	19563690	19563691	chr22:19563691:A:G	rs1053801785	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr22	19568899	19568900	chr22:19568900:G:C	rs5746776	G	C	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr22	19580294	19580295	chr22:19580295:C:T	rs9604979	C	T	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr22	19598312	19598313	chr22:19598313:A:G	rs5746795	A	G	G	Sox3.mouse_HMG_3	6	1	-	-0.100419418398777	-6.708370059939574	ACTGCATGGTAGCCATG
chr22	19607090	19607091	chr22:19607091:T:G	rs9618621	T	G	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr22	19692293	19692294	chr22:19692294:C:T	rs13053440	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr22	19800212	19800213	chr22:19800213:C:T	rs748806	C	T	T	Sox3.mouse_HMG_3	14	1	+	2.4410897961786953	2.4410897961786953	CATAAATTACAGTCCTA
chr22	19873603	19873604	chr22:19873604:T:C	rs7285948	T	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr22	20053078	20053079	chr22:20053079:C:T	rs17817689	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr22	20264843	20264844	chr22:20264844:C:G	rs1472582839	C	G	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr22	20297081	20297082	chr22:20297082:G:A	rs9617874	G	A	.	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr22	20420701	20420702	chr22:20420702:T:C	rs140952073	T	C	T	Sox3.mouse_HMG_3	2	1	+	3.517964198903469	-3.08791491932746	GATGAATTTCAGTACTG
chr22	20532134	20532135	chr22:20532135:C:T	rs114996979	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr22	20572337	20572338	chr22:20572338:G:A	rs165918	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr22	20746553	20746554	chr22:20746554:C:T	rs2329483	C	T	c	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr22	20826522	20826523	chr22:20826523:C:A	rs5760858	C	A	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr22	20951635	20951636	chr22:20951636:T:C	chr22:20951636:T:C	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr22	21086940	21086941	chr22:21086941:A:T	rs60323645	A	T	N	Sox3.mouse_HMG_3	12	1	-	-0.5587521688612462	-6.671563028588476	TGGAAATGCCAGTCATC
chr22	21092789	21092790	chr22:21092790:T:A	rs11912450	T	A	t	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr22	21109255	21109256	chr22:21109256:T:C	rs2845420	T	C	t	Sox3.mouse_HMG_3	7	1	+	0.7686062818781845	-4.6348048980991345	TTTGAAATGCAGCCATA
chr22	21337783	21337784	chr22:21337784:C:T	rs3859755	C	T	.	Sox3.mouse_HMG_3	11	1	-	0.011254575867243544	-4.638920149938895	CATGAATGGCCGCCAGA
chr22	21579490	21579491	chr22:21579491:C:T	rs181366	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr22	21782108	21782109	chr22:21782109:T:G	rs9607272	T	G	t	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr22	21935024	21935025	chr22:21935025:G:A	rs5995269	G	A	A	Sox3.mouse_HMG_3	7	1	+	-0.09784739229471784	-6.651396106952446	AATGAAGGCTGTTCACA
chr22	22078698	22078699	chr22:22078699:A:G	rs4821687	A	G	g	Sox3.mouse_HMG_3	4	1	+	1.460354650105167	-4.922462077888901	ATTGAGTTAAATTCATG
chr22	22102371	22102372	chr22:22102372:A:G	rs6000949	A	G	.	Sox3.mouse_HMG_3	5	1	+	-0.015516803335009377	-6.504351725405876	GAAAAATGCCAGTCACT
chr22	22110069	22110070	chr22:22110070:C:T	rs8135908	C	T	.	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr22	22184347	22184348	chr22:22184348:A:G	rs6001219	A	G	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr22	22204063	22204064	chr22:22204064:T:G	rs4821846	T	G	T	Sox3.mouse_HMG_3	16	1	-	0.797646225258801	-1.2202695739659741	TAGGCATTTTATTCAGA
chr22	22231976	22231977	chr22:22231977:G:A	rs34019992	G	A	.	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr22	22241653	22241654	chr22:22241654:C:A	rs7289443	C	A	.	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr22	22382104	22382105	chr22:22382105:C:T	rs7289376	C	T	.	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr22	22389195	22389196	chr22:22389196:C:T	rs2097199	C	T	.	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr22	22400034	22400035	chr22:22400035:A:G	rs78884711	A	G	.	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr22	22480403	22480404	chr22:22480404:T:C	rs76062800	T	C	c	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr22	22666876	22666877	chr22:22666877:C:A	rs57729294	C	A	.	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr22	22687233	22687234	chr22:22687234:C:T	rs443756	C	T	.	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr22	22702867	22702868	chr22:22702868:C:G	rs5751521	C	G	.	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr22	22722566	22722567	chr22:22722567:C:G	rs4822295	C	G	.	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr22	22752750	22752751	chr22:22752751:A:G	rs73162903	A	G	.	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr22	22756157	22756158	chr22:22756158:G:C	rs865921385	G	C	.	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr22	22766639	22766640	chr22:22766640:A:G	rs2187972	A	G	.	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr22	22795388	22795389	chr22:22795389:T:C	rs6003307	T	C	.	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr22	22801804	22801805	chr22:22801805:A:G	rs2040346	A	G	.	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr22	22813239	22813240	chr22:22813240:A:T	rs145360226	A	T	.	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr22	22930480	22930481	chr22:22930481:T:C	rs403478	T	C	.	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr22	22946092	22946093	chr22:22946093:A:G	rs5996421	A	G	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr22	22952565	22952566	chr22:22952566:C:A	rs546959547	C	A	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr22	23031450	23031451	chr22:23031451:C:T	rs6003477	C	T	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr22	23057282	23057283	chr22:23057283:C:T	rs6003494	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr22	23147025	23147026	chr22:23147026:C:G	rs115667459	C	G	C	Sox3.mouse_HMG_3	2	1	-	4.298737458966714	4.441838302607388	GAGGAATTACCTTCATG
chr22	23187980	23187981	chr22:23187981:T:G	rs2267009	T	G	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr22	23216373	23216374	chr22:23216374:A:T	rs2267015	A	T	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr22	23284708	23284709	chr22:23284709:G:A	rs13054277	G	A	G	Sox3.mouse_HMG_3	1	1	+	0.417654208449487	3.517784144886778	GGTGGATTTCAGTCCTG
chr22	23460627	23460628	chr22:23460628:C:T	chr22:23460628:C:T	C	T	c	Sox3.mouse_HMG_3	16	1	-	-0.906222782993505	-0.9421632394460306	CGTGTCTGTCAGTCATG
chr22	23517508	23517509	chr22:23517509:G:T	rs114090144	G	T	g	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr22	23517552	23517553	chr22:23517553:T:A	rs184059905	T	A	t	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr22	23573464	23573465	chr22:23573465:G:A	rs73157031	G	A	.	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr22	23707389	23707390	chr22:23707390:G:A	rs60422275	G	A	g	Sox3.mouse_HMG_3	15	1	+	3.5740665644820577	4.432847911338478	TATAAGTGGCATTCAGA
chr22	23743059	23743060	chr22:23743060:G:A	rs5751721	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr22	23743064	23743065	chr22:23743065:C:T	rs17630135	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr22	23832322	23832323	chr22:23832323:G:A	rs9612481	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr22	23920025	23920026	chr22:23920026:C:A	rs76795716	C	A	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr22	23946479	23946480	chr22:23946480:A:G	rs1250864256	A	G	a	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr22	23956415	23956416	chr22:23956416:C:T	rs140117085	C	T	c	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr22	23987034	23987035	chr22:23987035:G:A	rs9624374	G	A	-	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr22	24009045	24009046	chr22:24009046:G:A	rs738809	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr22	24054571	24054572	chr22:24054572:A:G	rs2073396	A	G	G	Sox3.mouse_HMG_3	16	1	+	4.360131194283397	4.396071650735923	AATGGATTTCATACATA
chr22	24067171	24067172	chr22:24067172:T:G	rs62642523	T	G	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr22	24451637	24451638	chr22:24451638:T:A	rs1041750	T	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr22	24486778	24486779	chr22:24486779:G:A	chr22:24486779:G:A	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr22	24525640	24525641	chr22:24525641:G:A	rs62231900	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr22	24550545	24550546	chr22:24550546:A:C	rs62231934	A	C	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr22	24550553	24550554	chr22:24550554:G:C	rs7292105	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr22	25030773	25030774	chr22:25030774:T:C	rs76192804	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr22	25055448	25055449	chr22:25055449:G:A	rs1056714193	G	A	g	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr22	25086013	25086014	chr22:25086014:A:C	rs562706645	A	C	A	Sox3.mouse_HMG_3	0	1	+	1.8278165773844524	0.9293089793941769	AATGAATGTTATGCTGA
chr22	25086021	25086022	chr22:25086022:T:G	rs77161003	T	G	T	Sox3.mouse_HMG_3	8	1	+	1.8278165773844524	2.5327189909784904	AATGAATGTTATGCTGA
chr22	25207585	25207586	chr22:25207586:G:A	rs5760904	G	A	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr22	25354267	25354268	chr22:25354268:T:A	rs5761042	T	A	.	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr22	25354313	25354314	chr22:25354314:G:A	rs73404703	G	A	.	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr22	25355447	25355448	chr22:25355448:C:T	rs5752142	C	T	.	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr22	25493417	25493418	chr22:25493418:A:C	rs6004675	A	C	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr22	25552678	25552679	chr22:25552679:G:T	rs535738979	G	T	G	Sox3.mouse_HMG_3	9	1	-	-0.8364736626174325	-6.89069228712575	CTGGAATTGCAGGCATG
chr22	25644324	25644325	chr22:25644325:A:G	rs77927958	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr22	25661193	25661194	chr22:25661194:C:A	rs16980523	C	A	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr22	25723008	25723009	chr22:25723009:C:T	rs6519623	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr22	25758540	25758541	chr22:25758541:C:T	rs5761165	C	T	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr22	25764565	25764566	chr22:25764566:C:T	rs133893	C	T	c	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr22	25801960	25801961	chr22:25801961:C:A	rs910520	C	A	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr22	25801961	25801962	chr22:25801962:T:G	rs910521	T	G	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr22	25802010	25802011	chr22:25802011:T:C	rs5761210	T	C	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr22	25892900	25892901	chr22:25892901:G:A	rs9620565	G	A	G	Sox3.mouse_HMG_3	11	1	-	0.36897470049732406	6.453585526599269	CATGAATTTCACGCAGA
chr22	25901174	25901175	chr22:25901175:C:T	rs77999892	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr22	25901226	25901227	chr22:25901227:G:A	rs6004818	G	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr22	25996267	25996268	chr22:25996268:A:G	rs5761347	A	G	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr22	26106542	26106543	chr22:26106543:A:G	rs134707	A	G	G	Sox3.mouse_HMG_3	14	1	-	2.0255512197887544	2.0255512197887544	GGAGAATTGCATTCTTT
chr22	26226312	26226313	chr22:26226313:C:A	rs9613134	C	A	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr22	26238783	26238784	chr22:26238784:C:T	rs9620595	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr22	26259785	26259786	chr22:26259786:C:T	rs1207396	C	T	T	Sox3.mouse_HMG_3	8	1	-	3.7498013464854765	3.1266846993076634	TATGATTGGCATTCCAG
chr22	26503227	26503228	chr22:26503228:G:A	rs116156744	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr22	26644138	26644139	chr22:26644139:T:C	rs9625065	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr22	26707822	26707823	chr22:26707823:A:G	rs5761694	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr22	26725400	26725401	chr22:26725401:A:G	rs5761705	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr22	26767480	26767481	chr22:26767481:C:T	rs12484797	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr22	26812747	26812748	chr22:26812748:G:A	rs1894622	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr22	26836396	26836397	chr22:26836397:T:C	rs78042618	T	C	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr22	26847531	26847532	chr22:26847532:C:T	rs112029463	C	T	C	Sox3.mouse_HMG_3	8	1	-	0.36427295724614406	-0.25884368993166906	GGTGAATGGTGCTCAGG
chr22	26888100	26888101	chr22:26888101:C:A	rs3233	C	A	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr22	27129342	27129343	chr22:27129343:T:C	rs12168973	T	C	T	Sox3.mouse_HMG_3	9	1	+	0.8752280316230368	0.8675913546312908	CAGGAATTTTATACAAG
chr22	27146881	27146882	chr22:27146882:A:G	rs16983783	A	G	a	Sox3.mouse_HMG_3	0	1	+	5.496471115828693	6.321755016975036	ACTGAGTTGCAGTCATG
chr22	27233329	27233330	chr22:27233330:T:A	rs549204	T	A	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr22	27379835	27379836	chr22:27379836:T:C	rs7288551	T	C	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr22	27420822	27420823	chr22:27420823:G:A	rs733164	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr22	27733298	27733299	chr22:27733299:T:C	rs909700	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr22	27886705	27886706	chr22:27886706:C:A	rs138946417	C	A	A	Sox3.mouse_HMG_3	7	1	-	1.0001067404714485	0.15007379824137712	GGTGAATGTAATACAAA
chr22	28026028	28026029	chr22:28026029:A:G	rs7286519	A	G	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr22	28179450	28179451	chr22:28179451:C:T	rs544793164	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr22	28395875	28395876	chr22:28395876:C:T	rs9625467	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr22	28514688	28514689	chr22:28514689:G:A	rs75533475	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr22	28514690	28514691	chr22:28514691:G:A	rs117790963	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr22	28712448	28712449	chr22:28712449:C:T	rs17879919	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr22	28908211	28908212	chr22:28908212:A:T	rs469990	A	T	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr22	28925551	28925552	chr22:28925552:T:G	rs141774559	T	G	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr22	28986842	28986843	chr22:28986843:A:G	rs12627758	A	G	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr22	29022174	29022175	chr22:29022175:A:T	rs874917	A	T	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr22	29065161	29065162	chr22:29065162:T:A	rs134561	T	A	T	Sox3.mouse_HMG_3	8	1	+	8.787024838158434	8.868810604574659	TGTGAATGTTATTAATA
chr22	29306144	29306145	chr22:29306145:C:T	rs58026214	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr22	29306148	29306149	chr22:29306149:T:C	rs174761	T	C	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr22	29380060	29380061	chr22:29380061:T:C	rs5763179	T	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr22	29432136	29432137	chr22:29432137:C:T	rs202003076	C	T	c	Sox3.mouse_HMG_3	13	1	+	0.03789292332814864	-6.569367687133871	GATGGATTCCATTCGGC
chr22	29485478	29485479	chr22:29485479:G:A	rs3815335	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr22	29555660	29555661	chr22:29555661:A:T	rs7609	A	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr22	29599521	29599522	chr22:29599522:G:A	rs9608790	G	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr22	29853590	29853591	chr22:29853591:C:G	rs61540772	C	G	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr22	30040221	30040222	chr22:30040222:T:C	rs746870903	T	C	T	Sox3.mouse_HMG_3	14	1	-	-1.4665389508074638	-7.848485117234374	GCTGCATGGCAGACAAG
chr22	30185732	30185733	chr22:30185733:C:T	rs5753037	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr22	30382469	30382470	chr22:30382470:A:G	rs17658238	A	G	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr22	30565954	30565955	chr22:30565955:A:G	rs73881480	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr22	30565995	30565996	chr22:30565996:A:G	rs73394283	A	G	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr22	30619574	30619575	chr22:30619575:G:A	rs7288627	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr22	30619585	30619586	chr22:30619586:C:A	rs7288385	C	A	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr22	30619616	30619617	chr22:30619617:C:T	rs74714074	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr22	31079508	31079509	chr22:31079509:C:T	rs1003379305	C	T	c	Sox3.mouse_HMG_3	6	1	+	-0.6089762268002998	5.998974414740496	GGTGACCGCCATTCAGG
chr22	31184786	31184787	chr22:31184787:C:T	rs62237396	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr22	31191204	31191205	chr22:31191205:T:C	rs8143002	T	C	T	Sox3.mouse_HMG_3	4	1	-	1.8652648247268588	-4.517551903267209	AATGAATGACCCTCAGG
chr22	31244770	31244771	chr22:31244771:T:A	rs944272324	T	A	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr22	31280467	31280468	chr22:31280468:T:C	rs1858821	T	C	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr22	31445762	31445763	chr22:31445763:T:A	rs738657	T	A	t	Sox3.mouse_HMG_3	3	1	-	7.355103424993969	6.2301738280084855	TTTAAATTGTATTCATC
chr22	31600638	31600639	chr22:31600639:A:C	rs1018490	A	C	A	Sox3.mouse_HMG_3	4	1	+	0.6440489609145151	-6.10649254720487	CATGAACTCCAGTCTTT
chr22	31755227	31755228	chr22:31755228:A:G	rs5998114	A	G	G	Sox3.mouse_HMG_3	13	1	+	2.6512854481516968	2.426661511667053	GTTGAATTGCATTATTA
chr22	32150958	32150959	chr22:32150959:C:T	rs2019949	C	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr22	32188513	32188514	chr22:32188514:T:A	rs5998286	T	A	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr22	32232263	32232264	chr22:32232264:C:T	rs78335429	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr22	32283655	32283656	chr22:32283656:C:T	rs5998378	C	T	c	Sox3.mouse_HMG_3	0	1	-	0.29700817843674365	-0.5282757227095999	GGTGACTTACATTTATT
chr22	32314862	32314863	chr22:32314863:C:T	rs12166399	C	T	t	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr22	32319166	32319167	chr22:32319167:C:G	rs9609506	C	G	g	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr22	32344056	32344057	chr22:32344057:G:A	rs2076034	G	A	g	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr22	32564426	32564427	chr22:32564427:T:C	rs116787506	T	C	T	Sox3.mouse_HMG_3	1	1	+	8.254419852772052	7.047637147105253	ATTGAATGCTTTTCATA
chr22	32607257	32607258	chr22:32607258:T:C	rs147345735	T	C	t	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr22	32607329	32607330	chr22:32607330:A:T	rs139577711	A	T	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr22	32629254	32629255	chr22:32629255:A:G	rs2157168	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr22	32646222	32646223	chr22:32646223:C:T	rs131065	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr22	32802596	32802597	chr22:32802597:G:A	rs12169569	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr22	32862119	32862120	chr22:32862120:T:A	rs370344672	T	A	T	Sox3.mouse_HMG_3	15	1	+	2.1702557149609127	-0.0935537492759082	TTTAAACTACATTCATG
chr22	32986184	32986185	chr22:32986185:C:T	rs12166853	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr22	32986199	32986200	chr22:32986200:C:T	rs1256819498	C	T	C	Sox3.mouse_HMG_3	16	1	-	-0.5161225222118901	-0.5520629786644158	AGTAGATGGCAGTCAAG
chr22	32986235	32986236	chr22:32986236:G:A	rs114289214	G	A	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr22	32998081	32998082	chr22:32998082:C:T	rs133931	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr22	33014219	33014220	chr22:33014220:C:A	rs4560230	C	A	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr22	33113009	33113010	chr22:33113010:A:G	rs4445	A	G	G	Sox3.mouse_HMG_3	10	1	+	2.2316092654648436	-4.376341376075953	TATTAAATGCATTCAAG
chr22	33220101	33220102	chr22:33220102:G:A	rs9306274	G	A	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr22	33350637	33350638	chr22:33350638:G:A	rs17723309	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr22	33390264	33390265	chr22:33390265:T:C	rs9609775	T	C	T	Sox3.mouse_HMG_3	2	1	+	0.23117142510735844	-6.374707693123569	TATGAATTTCACTCTCA
chr22	33424269	33424270	chr22:33424270:G:T	rs8138344	G	T	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr22	33582144	33582145	chr22:33582145:T:C	rs130419	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr22	33720551	33720552	chr22:33720552:G:A	rs5749652	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr22	33738052	33738053	chr22:33738053:G:C	rs2283935	G	C	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr22	33823179	33823180	chr22:33823180:T:A	rs5754701	T	A	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr22	34111150	34111151	chr22:34111151:G:A	rs117114797	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr22	34121243	34121244	chr22:34121244:A:G	rs5749736	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr22	34282149	34282150	chr22:34282150:A:G	rs13054233	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr22	34494005	34494006	chr22:34494006:T:C	rs205241	T	C	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr22	34544949	34544950	chr22:34544950:T:G	rs5755093	T	G	G	Sox3.mouse_HMG_3	11	1	+	4.701250040879778	3.2668139405839707	TATGATTTATATCCATA
chr22	34579108	34579109	chr22:34579109:C:A	rs73403644	C	A	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr22	34813144	34813145	chr22:34813145:C:T	rs5999551	C	T	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr22	34833837	34833838	chr22:34833838:C:A	rs9610158	C	A	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr22	34886839	34886840	chr22:34886840:G:A	rs74348328	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr22	34886859	34886860	chr22:34886860:G:T	rs972637152	G	T	G	Sox3.mouse_HMG_3	3	1	+	2.6427047384942766	-4.263789746020438	ATTGAACTGGATTCATA
chr22	34964392	34964393	chr22:34964393:T:C	rs77945845	T	C	T	Sox3.mouse_HMG_3	14	1	-	-0.10243794447291843	-6.484384110899829	ACAGAATGGCATGCAAG
chr22	34972548	34972549	chr22:34972549:A:G	rs5995042	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr22	35274743	35274744	chr22:35274744:G:C	rs9607261	G	C	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr22	35303110	35303111	chr22:35303111:T:G	rs79884643	T	G	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr22	35418119	35418120	chr22:35418120:G:T	rs2071738	G	T	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr22	35444784	35444785	chr22:35444785:G:T	rs28609992	G	T	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr22	35490106	35490107	chr22:35490107:C:G	rs73154028	C	G	C	Sox3.mouse_HMG_3	13	1	+	2.1609058444687204	-4.446354765993299	AATGACTGCTACTCAGA
chr22	35566012	35566013	chr22:35566013:A:G	rs738368	A	G	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr22	35707903	35707904	chr22:35707904:C:T	rs10460756	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr22	35707937	35707938	chr22:35707938:A:T	rs9619564	A	T	A	Sox3.mouse_HMG_3	0	1	-	0.002917012533365959	-0.553446034813226	TTGGAATTATAGGCATG
chr22	35836106	35836107	chr22:35836107:G:A	rs79330410	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr22	36080616	36080617	chr22:36080617:A:G	rs6000118	A	G	g	Sox3.mouse_HMG_3	10	1	+	0.24166580069515065	-6.366284840845646	GATCAGTGATATTCAGC
chr22	36156968	36156969	chr22:36156969:G:A	rs777528499	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr22	36157162	36157163	chr22:36157163:C:T	rs559412045	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr22	36162803	36162804	chr22:36162804:T:A	rs57970118	T	A	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr22	36189515	36189516	chr22:36189516:T:C	rs1053982	T	C	t	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr22	36189560	36189561	chr22:36189561:C:A	rs5756090	C	A	c	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr22	36189565	36189566	chr22:36189566:G:A	rs9610436	G	A	g	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr22	36222122	36222123	chr22:36222123:A:T	rs71314967	A	T	A	Sox3.mouse_HMG_3	12	1	-	2.1465594143451567	-3.966251445382073	TCTGAATTTTATTCTCA
chr22	36261072	36261073	chr22:36261073:C:G	rs136160	C	G	c	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr22	36329648	36329649	chr22:36329649:T:C	rs543479414	T	C	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr22	36424676	36424677	chr22:36424677:T:G	rs28491141	T	G	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr22	36459788	36459789	chr22:36459789:G:A	rs911362099	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr22	36536257	36536258	chr22:36536258:T:C	rs6000315	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr22	36586330	36586331	chr22:36586331:T:C	rs41307219	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr22	36734566	36734567	chr22:36734567:A:G	rs147897770	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.1220029225822237	-3.5923904891328444	AATCAATGTCAGTCTTC
chr22	37101985	37101986	chr22:37101986:C:T	rs17750152	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr22	37345416	37345417	chr22:37345417:A:G	rs763080	A	G	A	Sox3.mouse_HMG_3	8	1	-	4.581812046785218	4.843931791701324	AATGCATGTTATGCATA
chr22	37400936	37400937	chr22:37400937:G:C	rs8138380	G	C	C	Sox3.mouse_HMG_3	15	1	+	0.8037725796872132	-0.7880300209346135	TAAGTATTTCATTCAGT
chr22	37457660	37457661	chr22:37457661:A:T	rs59219177	A	T	A	Sox3.mouse_HMG_3	14	1	+	0.4438455646857	-5.938100601741211	TAAGAATGTGCTTCATA
chr22	37462355	37462356	chr22:37462356:G:A	rs73414290	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr22	37487819	37487820	chr22:37487820:T:C	rs3761441	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr22	37809052	37809053	chr22:37809053:A:G	rs763137	A	G	g	Sox3.mouse_HMG_3	10	1	+	1.552123232132018	-5.05582740940878	GGTGAGTGGTAATCATC
chr22	37932589	37932590	chr22:37932590:A:G	rs34834842	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr22	38172936	38172937	chr22:38172937:A:T	rs2413503	A	T	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr22	38237012	38237013	chr22:38237013:C:T	rs56207984	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr22	38239237	38239238	chr22:38239238:T:C	rs148707198	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr22	38304757	38304758	chr22:38304758:G:A	rs73884679	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr22	38312500	38312501	chr22:38312501:G:A	rs56182369	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr22	38421099	38421100	chr22:38421100:C:T	rs138402	C	T	C	Sox3.mouse_HMG_3	3	1	-	2.2783398540284905	-3.5032250335007404	GAAGAATGGCAGGCAAT
chr22	38437589	38437590	chr22:38437590:C:G	rs196075	C	G	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr22	38472988	38472989	chr22:38472989:C:T	rs114021754	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr22	38676466	38676467	chr22:38676467:G:A	rs5750662	G	A	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr22	38699647	38699648	chr22:38699648:T:C	rs149593440	T	C	T	Sox3.mouse_HMG_3	9	1	+	4.26936405792734	4.261727380935594	GATAAATGGTAGTGATT
chr22	38754056	38754057	chr22:38754057:G:A	rs143646352	G	A	.	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr22	38884940	38884941	chr22:38884941:A:C	rs118862	A	C	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr22	38945951	38945952	chr22:38945952:T:C	rs5750711	T	C	T	Sox3.mouse_HMG_3	2	1	+	0.5802707252153738	-6.025608393015558	TATGACCTACAGTCAAA
chr22	38951664	38951665	chr22:38951665:G:T	rs373151669	G	T	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr22	39179215	39179216	chr22:39179216:A:G	rs12627955	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr22	39206128	39206129	chr22:39206129:T:C	rs2413576	T	C	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr22	39250416	39250417	chr22:39250417:A:G	rs56229619	A	G	A	Sox3.mouse_HMG_3	11	1	-	0.3407067715639942	-5.743904054537951	GGTGAATGCTCTGCAAG
chr22	39304752	39304753	chr22:39304753:C:T	rs17000979	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr22	39400537	39400538	chr22:39400538:A:G	rs188804754	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr22	39449541	39449542	chr22:39449542:A:G	rs5757681	A	G	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr22	39601624	39601625	chr22:39601625:C:T	rs713865	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr22	40209158	40209159	chr22:40209159:G:A	rs6001841	G	A	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr22	40236042	40236043	chr22:40236043:A:C	rs4821935	A	C	C	Sox3.mouse_HMG_3	0	1	-	0.012598744294223474	0.28151959809397753	TTGGAATGGCATACAGA
chr22	40432356	40432357	chr22:40432357:T:C	rs6001912	T	C	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr22	40578247	40578248	chr22:40578248:T:C	rs28444678	T	C	C	Sox3.mouse_HMG_3	15	1	-	-0.23610171109939349	-1.094883057955814	CATGAATTCTGGCCAAG
chr22	40594218	40594219	chr22:40594219:G:A	rs181387000	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr22	40740700	40740701	chr22:40740701:A:G	rs6002097	A	G	A	Sox3.mouse_HMG_3	2	1	-	-0.7581503467637318	-7.364029464994662	GATGATAGCCATCCATA
chr22	40747747	40747748	chr22:40747748:G:A	rs73172836	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr22	40749137	40749138	chr22:40749138:C:T	rs6002105	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr22	40765044	40765045	chr22:40765045:C:G	rs5758065	C	G	G	Sox3.mouse_HMG_3	9	1	+	0.059171538477957863	-5.280757468896607	GAACAATGACATACATG
chr22	41197932	41197933	chr22:41197933:C:T	rs2179727	C	T	C	Sox3.mouse_HMG_3	7	1	-	4.640422189299513	-1.9131265253582135	TAAGAAAGTTATTCATT
chr22	41197940	41197941	chr22:41197941:T:G	rs7288252	T	G	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr22	41394495	41394496	chr22:41394496:T:C	rs2273071	T	C	C	Sox3.mouse_HMG_3	15	1	+	-0.8061107129101355	-5.520504124625204	AAAGAAAGGGAGTCATG
chr22	41413323	41413324	chr22:41413324:G:T	rs115315487	G	T	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr22	41416814	41416815	chr22:41416815:T:C	rs202663	T	C	C	Sox3.mouse_HMG_3	4	1	-	4.082606946409559	-2.300209781584509	CCTGAATTACAGGCATG
chr22	41479844	41479845	chr22:41479845:C:T	rs887466835	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr22	41667098	41667099	chr22:41667099:G:C	rs74962528	G	C	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr22	41903530	41903531	chr22:41903531:A:G	rs17379759	A	G	A	Sox3.mouse_HMG_3	10	1	+	0.5705899843038263	-6.037360657236971	GTTGACTTTCATTCTTT
chr22	41948292	41948293	chr22:41948293:G:A	rs8140869	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr22	42002190	42002191	chr22:42002191:T:C	rs11090066	T	C	T	Sox3.mouse_HMG_3	12	1	+	1.201459148387451	-4.991394419013315	TTTGAATTACCTTTATG
chr22	42080410	42080411	chr22:42080411:G:A	rs73887920	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr22	42090313	42090314	chr22:42090314:A:G	rs746736649	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr22	42090399	42090400	chr22:42090400:C:G	rs13056622	C	G	C	Sox3.mouse_HMG_3	2	1	+	-0.5679318266219813	-0.7110326702626546	TACGAATGCTAGGCACG
chr22	42532917	42532918	chr22:42532918:A:G	rs56306647	A	G	-	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr22	42613980	42613981	chr22:42613981:G:A	rs150308198	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr22	42614002	42614003	chr22:42614003:A:G	rs144872028	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr22	42615229	42615230	chr22:42615230:C:T	rs192384900	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr22	42615231	42615232	chr22:42615232:A:G	rs75975947	A	G	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr22	42692071	42692072	chr22:42692072:G:A	rs28915391	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr22	42760462	42760463	chr22:42760463:A:G	rs5751360	A	G	-	Sox3.mouse_HMG_3	2	1	-	1.876649732271386	-4.729229385959546	CATGGATTACAGGCATG
chr22	42774875	42774876	chr22:42774876:C:T	rs7285149	C	T	t	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr22	42878765	42878766	chr22:42878766:A:G	rs9611951	A	G	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr22	42930103	42930104	chr22:42930104:C:T	rs4822231	C	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr22	42958123	42958124	chr22:42958124:T:C	rs5759057	T	C	T	Sox3.mouse_HMG_3	11	1	+	0.15532294610831587	-5.929287879993629	GCTAAGTGATATTCATC
chr22	43004613	43004614	chr22:43004614:T:G	rs10222268	T	G	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr22	43053501	43053502	chr22:43053502:T:C	rs2038063	T	C	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr22	43103892	43103893	chr22:43103893:C:T	rs6003063	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr22	43126699	43126700	chr22:43126700:T:C	rs1042646562	T	C	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr22	43202374	43202375	chr22:43202375:G:A	rs12484656	G	A	G	Sox3.mouse_HMG_3	8	1	-	0.6756298194325097	0.413510074516404	AATGAACTCCAGTCTTC
chr22	43562087	43562088	chr22:43562088:G:A	rs992660443	G	A	G	Sox3.mouse_HMG_3	8	1	+	2.992356882127388	2.369240234949575	AATGGAGTGCAGTCATA
chr22	43724240	43724241	chr22:43724241:T:C	rs5764245	T	C	t	Sox3.mouse_HMG_3	5	1	-	1.3092676408133028	-5.179567281257563	GCTGCATTGTATCCATG
chr22	43795774	43795775	chr22:43795775:A:G	rs5764304	A	G	A	Sox3.mouse_HMG_3	3	1	+	1.1713210303947803	6.9528859179240134	AATAAATGGTTTTCACA
chr22	43853388	43853389	chr22:43853389:G:A	rs470090	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr22	43964126	43964127	chr22:43964127:G:A	rs2073082	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr22	43964129	43964130	chr22:43964130:C:A	rs2073083	C	A	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr22	44178523	44178524	chr22:44178524:G:A	rs2092351	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr22	44223905	44223906	chr22:44223906:G:A	rs139248	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr22	44247990	44247991	chr22:44247991:T:C	rs9614401	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr22	44248031	44248032	chr22:44248032:C:T	rs41278857	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr22	44260112	44260113	chr22:44260113:G:A	rs118183745	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr22	44349003	44349004	chr22:44349004:G:A	rs949441	G	A	G	Sox3.mouse_HMG_3	9	1	+	-0.8366193026576851	-1.55090891979144	AATCAAAGCGATTCATG
chr22	44390951	44390952	chr22:44390952:T:A	rs5766044	T	A	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr22	44500458	44500459	chr22:44500459:C:T	rs5765694	C	T	c	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr22	44541410	44541411	chr22:44541411:G:A	rs57219831	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr22	44574544	44574545	chr22:44574545:C:A	rs11704130	C	A	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr22	44598022	44598023	chr22:44598023:G:A	rs12170776	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr22	44861490	44861491	chr22:44861491:C:T	rs55691021	C	T	C	Sox3.mouse_HMG_3	3	1	-	-1.604182711374933	-7.385747598904163	GCTGGATGCCTTTCAGG
chr22	44986729	44986730	chr22:44986730:C:T	rs4823429	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr22	45033967	45033968	chr22:45033968:T:C	rs132029	T	C	T	Sox3.mouse_HMG_3	15	1	+	0.6008162601591407	-4.113577151555927	TGTGAATTCCAGCCCTG
chr22	45158928	45158929	chr22:45158929:C:T	rs73432244	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr22	45158931	45158932	chr22:45158932:T:G	chr22:45158932:T:G	T	G	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr22	45158949	45158950	chr22:45158950:C:T	rs12483927	C	T	C	Sox3.mouse_HMG_3	2	1	+	1.59950748128341	8.205386599514341	GCCGAATGTCAGTCACA
chr22	45188053	45188054	chr22:45188054:A:G	rs6007500	A	G	A	Sox3.mouse_HMG_3	15	1	-	0.9936645240776136	-3.7207288876374545	TCTGACTTGTATTAATG
chr22	45204876	45204877	chr22:45204877:A:G	rs541401632	A	G	A	Sox3.mouse_HMG_3	9	1	-	0.39354541071199367	0.3859087337202477	TATTAATGCTAGTAAAT
chr22	45218818	45218819	chr22:45218819:T:C	rs5766554	T	C	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr22	45218821	45218822	chr22:45218822:C:T	rs5766555	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr22	45243127	45243128	chr22:45243128:G:A	rs116511844	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr22	45248489	45248490	chr22:45248490:C:T	rs5766586	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr22	45277049	45277050	chr22:45277050:A:G	rs80000651	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr22	45427712	45427713	chr22:45427713:C:T	rs9614663	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr22	45598622	45598623	chr22:45598623:C:T	rs3788675	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr22	45687143	45687144	chr22:45687144:G:A	rs9614504	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr22	45717830	45717831	chr22:45717831:G:C	rs138155	G	C	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr22	45777893	45777894	chr22:45777894:C:T	rs73444661	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr22	45778176	45778177	chr22:45778177:C:T	rs135991	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr22	45856215	45856216	chr22:45856216:A:G	rs5765672	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr22	45861474	45861475	chr22:45861475:T:C	rs5765677	T	C	C	Sox3.mouse_HMG_3	6	1	+	0.431923333568655	-6.176027307972143	GATGAATGGTACGCCTG
chr22	45905086	45905087	chr22:45905087:A:G	rs9330797	A	G	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr22	45984712	45984713	chr22:45984713:T:G	rs73446600	T	G	G	Sox3.mouse_HMG_3	7	1	+	1.5843145660199889	2.4343475082500614	AATGAATTATTTTCTAG
chr22	46099237	46099238	chr22:46099238:C:T	rs73456723	C	T	C	Sox3.mouse_HMG_3	0	1	-	2.185294909250108	1.3600110081037642	GGAGAATGCCAGTCCTG
chr22	46120363	46120364	chr22:46120364:G:C	rs547353535	G	C	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr22	46303712	46303713	chr22:46303713:T:A	chr22:46303713:T:A	T	A	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr22	46424672	46424673	chr22:46424673:T:C	rs6008821	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr22	46462185	46462186	chr22:46462186:G:T	rs6520016	G	T	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr22	46679695	46679696	chr22:46679696:A:T	rs184196406	A	T	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr22	46702822	46702823	chr22:46702823:T:C	rs79273339	T	C	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr22	46714974	46714975	chr22:46714975:C:T	rs7288442	C	T	C	Sox3.mouse_HMG_3	0	1	-	0.7702909855774324	-0.054992915568912504	GTTGAGTTACATTAATT
chr22	46801421	46801422	chr22:46801422:C:T	rs73182618	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr22	46854707	46854708	chr22:46854708:G:C	rs6008994	G	C	c	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr22	46854738	46854739	chr22:46854739:G:A	rs6008995	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr22	46931848	46931849	chr22:46931849:T:C	rs1983566	T	C	T	Sox3.mouse_HMG_3	9	1	+	2.4370191397424676	2.429382462750721	GTTGCATGTTATGCATA
chr22	46939330	46939331	chr22:46939331:G:A	rs56205905	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr22	46942541	46942542	chr22:46942542:G:A	rs4431	G	A	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr22	46957618	46957619	chr22:46957619:G:A	rs136085	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr22	46957624	46957625	chr22:46957625:A:G	rs8138194	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr22	47049015	47049016	chr22:47049016:C:G	rs131915	C	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr22	47061963	47061964	chr22:47061964:A:C	rs9941946	A	C	C	Sox3.mouse_HMG_3	10	1	+	-1.1170885842420635	-7.868140069423534	GGTGCATGCCAGTGATC
chr22	47062566	47062567	chr22:47062567:C:G	rs77455384	C	G	c	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr22	47062598	47062599	chr22:47062599:G:A	rs131927	G	A	A	Sox3.mouse_HMG_3	16	1	+	1.071938893022158	1.0359984365696324	AGTGACTTCTATTCCTG
chr22	47062602	47062603	chr22:47062603:C:T	rs131928	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr22	47191507	47191508	chr22:47191508:A:C	rs6007631	A	C	A	Sox3.mouse_HMG_3	8	1	+	1.6016924814910747	1.7820264599909559	TGTGAATTATTCTCATG
chr22	47208542	47208543	chr22:47208543:A:G	rs79469675	A	G	A	Sox3.mouse_HMG_3	0	1	+	0.28715550374179055	1.112439404888134	AATGCATGACAGCCAGA
chr22	47208568	47208569	chr22:47208569:T:C	rs135379	T	C	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr22	47310751	47310752	chr22:47310752:G:A	rs739115	G	A	G	Sox3.mouse_HMG_3	15	1	+	4.498187512908169	5.3569688597645895	TTTGGATTGTATTCAGT
chr22	47310768	47310769	chr22:47310769:G:A	rs5767665	G	A	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr22	47434436	47434437	chr22:47434437:C:T	rs141844844	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr22	47447659	47447660	chr22:47447660:T:C	rs130870	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr22	47540240	47540241	chr22:47540241:G:C	rs130474	G	C	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr22	47540254	47540255	chr22:47540255:C:A	rs130475	C	A	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr22	47543847	47543848	chr22:47543848:C:T	rs713648	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr22	47544746	47544747	chr22:47544747:G:A	rs6008252	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr22	47552838	47552839	chr22:47552839:G:A	rs5767804	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr22	47569553	47569554	chr22:47569554:T:C	rs6008273	T	C	C	Sox3.mouse_HMG_3	2	1	+	5.355766879915716	-1.2501122383152146	AGTGAATTTCATTCCTC
chr22	47615652	47615653	chr22:47615653:G:A	rs5767837	G	A	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr22	47680981	47680982	chr22:47680982:C:T	rs372222655	C	T	C	Sox3.mouse_HMG_3	9	1	+	0.5678612058749157	0.5754978828666617	GGTGAACCCCATTCAAA
chr22	47687368	47687369	chr22:47687369:A:T	rs4823672	A	T	T	Sox3.mouse_HMG_3	11	1	-	5.465575425048077	-0.6190354010538683	AACGGATGGTATTCATG
chr22	47776174	47776175	chr22:47776175:A:G	rs4447701	A	G	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr22	47885639	47885640	chr22:47885640:T:C	rs6008439	T	C	C	Sox3.mouse_HMG_3	2	1	+	-0.5504951026768159	-7.156374220907745	CTTGAATGTCAGTTCTG
chr22	47885647	47885648	chr22:47885648:A:G	rs1983704	A	G	A	Sox3.mouse_HMG_3	10	1	+	-0.5504951026768159	-7.158445744217612	CTTGAATGTCAGTTCTG
chr22	48050498	48050499	chr22:48050499:A:C	rs5767002	A	C	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr22	48323757	48323758	chr22:48323758:G:A	rs9615312	G	A	G	Sox3.mouse_HMG_3	7	1	+	-0.8405608996552217	-7.394109614312949	GCTGAGTGCCAGTAATT
chr22	48354632	48354633	chr22:48354633:A:G	rs5768555	A	G	g	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr22	48370087	48370088	chr22:48370088:G:A	rs13347233	G	A	G	Sox3.mouse_HMG_3	14	1	+	2.0443882865086804	8.426334452935592	ATTGATTGCCATTCGTG
chr22	48427992	48427993	chr22:48427993:C:T	rs141020851	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr22	48455265	48455266	chr22:48455266:C:A	rs9615893	C	A	C	Sox3.mouse_HMG_3	7	1	-	1.686050744448621	0.8360178022185498	GAAAAATGGTAATCATG
chr22	48485619	48485620	chr22:48485620:T:C	rs902797154	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr22	48605799	48605800	chr22:48605800:C:T	rs73889151	C	T	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr22	48616281	48616282	chr22:48616282:C:T	rs28638257	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr22	48669037	48669038	chr22:48669038:A:G	rs9617491	A	G	A	Sox3.mouse_HMG_3	5	1	+	-0.9234186469324894	-7.412253569003351	CAGGAATGGGATTAATG
chr22	48670947	48670948	chr22:48670948:G:A	rs12484312	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr22	48702237	48702238	chr22:48702238:A:G	rs73175175	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr22	48749455	48749456	chr22:48749456:C:T	rs77932923	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr22	48749487	48749488	chr22:48749488:G:A	rs131958	G	A	G	Sox3.mouse_HMG_3	15	1	+	0.6075572130137188	1.4663385598701393	TTTGAATTGGATACAGG
chr22	48758113	48758114	chr22:48758114:T:C	rs5771777	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr22	48758147	48758148	chr22:48758148:C:T	rs5771778	C	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr22	48759274	48759275	chr22:48759275:G:A	rs13056461	G	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr22	48774996	48774997	chr22:48774997:G:A	rs739154	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr22	48967929	48967930	chr22:48967930:G:A	rs73433971	G	A	N	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr22	49021022	49021023	chr22:49021023:T:G	rs17178433	T	G	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr22	49027102	49027103	chr22:49027103:C:G	rs17000231	C	G	C	Sox3.mouse_HMG_3	9	1	+	6.813604544805299	1.4736755374307353	TGTGAATGTCAATCAAA
chr22	49031185	49031186	chr22:49031186:A:G	rs5769819	A	G	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr22	49085777	49085778	chr22:49085778:T:C	rs5769884	T	C	T	Sox3.mouse_HMG_3	11	1	+	-0.033922127756955356	-6.1185329538589	CTTGAATGCTGTTCTTT
chr22	49094456	49094457	chr22:49094457:T:C	rs5769401	T	C	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr22	49140664	49140665	chr22:49140665:G:A	rs5769932	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr22	49159275	49159276	chr22:49159276:A:G	rs9616469	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr22	49182155	49182156	chr22:49182156:G:A	rs5769445	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr22	49187002	49187003	chr22:49187003:C:T	rs76806655	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr22	49227874	49227875	chr22:49227875:A:G	rs2688122	A	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr22	49238146	49238147	chr22:49238147:G:T	rs9616526	G	T	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr22	49238178	49238179	chr22:49238179:G:A	rs17226186	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr22	49265210	49265211	chr22:49265211:T:C	rs1880008	T	C	t	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr22	49265222	49265223	chr22:49265223:G:A	rs74556162	G	A	a	Sox3.mouse_HMG_3	13	1	-	-0.10736058802081705	-6.714621198482837	TTTGATTGGTATTCGGA
chr22	49265242	49265243	chr22:49265243:T:C	rs62220567	T	C	t	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr22	49337270	49337271	chr22:49337271:G:A	rs5769568	G	A	g	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr22	49337291	49337292	chr22:49337292:A:G	rs11702899	A	G	a	Sox3.mouse_HMG_3	8	1	+	6.9120855199072	7.535202167085016	GGTGAATTATATTGATT
chr22	49337313	49337314	chr22:49337314:C:G	rs848740	C	G	c	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr22	49391982	49391983	chr22:49391983:G:A	rs5770368	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr22	49391994	49391995	chr22:49391995:T:C	rs5770369	T	C	C	Sox3.mouse_HMG_3	6	1	+	3.67839742516502	-2.929553216375778	CATGAATGGAAGGCATG
chr22	49413213	49413214	chr22:49413214:G:A	rs6009666	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr22	49413256	49413257	chr22:49413257:G:A	rs6009667	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr22	49438780	49438781	chr22:49438781:T:C	rs6009257	T	C	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr22	49450415	49450416	chr22:49450416:C:T	rs148825644	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr22	49675890	49675891	chr22:49675891:T:G	rs5770637	T	G	g	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr22	49703684	49703685	chr22:49703685:T:C	rs11703480	T	C	T	Sox3.mouse_HMG_3	14	1	-	0.33510060816329257	-6.046845558263618	GGTGAATGAGCTTCAGG
chr22	49747979	49747980	chr22:49747980:C:T	rs75652317	C	T	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr22	49851286	49851287	chr22:49851287:A:G	rs12330122	A	G	A	Sox3.mouse_HMG_3	11	1	-	-0.8862791388421035	-6.97088996494405	GCTGCAGTCCATTCATT
chr22	49906270	49906271	chr22:49906271:C:T	rs11704238	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr22	50043821	50043822	chr22:50043822:G:A	rs8135472	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr22	50071828	50071829	chr22:50071829:T:C	rs2294394	T	C	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr22	50079796	50079797	chr22:50079797:A:C	rs11568176	A	C	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr22	50079809	50079810	chr22:50079810:T:C	rs2235349	T	C	T	Sox3.mouse_HMG_3	14	1	-	4.9426240666912635	-1.4393220997356466	GGTAAATGTTATTCACA
chr22	50140383	50140384	chr22:50140384:A:G	rs2340603	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr22	50289352	50289353	chr22:50289353:G:A	rs62241207	G	A	G	Sox3.mouse_HMG_3	1	1	+	4.682205181845976	7.782335118283267	CGTGAATGGCATTGAGA
chr22	50289362	50289363	chr22:50289363:T:C	rs28573806	T	C	C	Sox3.mouse_HMG_3	11	1	+	4.682205181845976	-1.402405644255969	CGTGAATGGCATTGAGA
chr22	50289364	50289365	chr22:50289365:G:A	rs145322724	G	A	G	Sox3.mouse_HMG_3	13	1	+	4.682205181845976	4.90682911833062	CGTGAATGGCATTGAGA
chr22	50293585	50293586	chr22:50293586:G:A	rs544254477	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr22	50293592	50293593	chr22:50293593:A:T	rs562453686	A	T	A	Sox3.mouse_HMG_3	12	1	-	0.3356228055270417	-5.777188054200188	GGCGCATTCCATTCATT
chr22	50625810	50625811	chr22:50625811:G:A	rs6151423	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr3	53488	53489	chr3:53489:C:G	rs17323863	C	G	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr3	53673	53674	chr3:53674:C:G	rs17075510	C	G	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr3	72449	72450	chr3:72450:T:C	rs954824	T	C	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr3	73648	73649	chr3:73649:A:C	rs79094998	A	C	A	Sox3.mouse_HMG_3	6	1	-	7.149488018210664	0.39843653302919213	GAGGAATGACATTCACA
chr3	546184	546185	chr3:546185:A:G	rs5012349	A	G	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr3	1349454	1349455	chr3:1349455:C:A	rs4684123	C	A	C	Sox3.mouse_HMG_3	7	1	-	2.533180710895997	1.6831477686659244	AATGAACGACATTAAAA
chr3	1403039	1403040	chr3:1403040:T:C	rs56408876	T	C	T	Sox3.mouse_HMG_3	15	1	-	1.453811181028759	0.5950298341723385	AATGACTTGCACTCAAT
chr3	1404268	1404269	chr3:1404269:C:T	rs57457678	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr3	1532771	1532772	chr3:1532772:T:C	rs11714228	T	C	T	Sox3.mouse_HMG_3	1	1	-	5.025767217131006	1.9256372806937134	TATGTATTCTAATCATG
chr3	1532779	1532780	chr3:1532780:T:C	rs76434754	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr3	1625052	1625053	chr3:1625053:G:C	rs1353815	G	C	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr3	1702065	1702066	chr3:1702066:T:A	rs4266172	T	A	T	Sox3.mouse_HMG_3	7	1	+	6.073063872289603	0.3695480998619475	ATTGAAATATATTCATT
chr3	1775036	1775037	chr3:1775037:G:A	rs13071826	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr3	1868042	1868043	chr3:1868043:G:A	rs9653977	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr3	1962566	1962567	chr3:1962567:T:C	rs17005939	T	C	T	Sox3.mouse_HMG_3	14	1	-	4.464901466491334	-1.9170446999355772	AATGAATTACATTTACT
chr3	2095845	2095846	chr3:2095846:T:C	rs78298421	T	C	T	Sox3.mouse_HMG_3	15	1	+	11.37166222004096	6.657268808325891	GATGTATTCCATTCATG
chr3	2095853	2095854	chr3:2095854:A:G	rs2729287	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	2142561	2142562	chr3:2142562:C:T	rs2727919	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	2270766	2270767	chr3:2270767:T:C	rs11915265	T	C	T	Sox3.mouse_HMG_3	16	1	+	3.6230444347122805	2.7561176952400017	AATAAATTACATTCCTT
chr3	2371817	2371818	chr3:2371818:A:T	rs6793455	A	T	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr3	2689222	2689223	chr3:2689223:T:C	rs908489	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr3	3032565	3032566	chr3:3032566:G:A	rs933737884	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr3	3034716	3034717	chr3:3034717:C:T	rs6790908	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr3	3034758	3034759	chr3:3034759:A:G	rs6803232	A	G	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	3143240	3143241	chr3:3143241:A:G	rs334756	A	G	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr3	3191694	3191695	chr3:3191695:T:A	rs3856853	T	A	T	Sox3.mouse_HMG_3	8	1	+	3.446154302070908	3.5279400684871325	TCTGAATTTTATTCTAT
chr3	3200615	3200616	chr3:3200616:A:C	rs959312	A	C	A	Sox3.mouse_HMG_3	12	1	-	2.788572577948492	-3.5925022683734174	AATGAAGGGCATTTAAA
chr3	3200643	3200644	chr3:3200644:T:C	rs4685615	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr3	3357625	3357626	chr3:3357626:A:C	rs1396429	A	C	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr3	3637115	3637116	chr3:3637116:C:G	rs9810463	C	G	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr3	3740034	3740035	chr3:3740035:G:A	rs6805805	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr3	4196438	4196439	chr3:4196439:G:A	rs1485248	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr3	4224612	4224613	chr3:4224613:G:T	rs313688	G	T	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr3	4351101	4351102	chr3:4351102:T:C	rs11928114	T	C	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr3	4351134	4351135	chr3:4351135:G:C	rs7638573	G	C	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr3	4379028	4379029	chr3:4379029:C:T	rs807785	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr3	4398989	4398990	chr3:4398990:C:T	rs17040622	C	T	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr3	4497134	4497135	chr3:4497135:G:A	rs304069	G	A	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr3	4720410	4720411	chr3:4720411:T:C	rs901851	T	C	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr3	4977120	4977121	chr3:4977121:A:G	rs370406958	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr3	5295441	5295442	chr3:5295442:G:A	rs1391961	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr3	5295454	5295455	chr3:5295455:C:T	rs343439	C	T	C	Sox3.mouse_HMG_3	7	1	-	2.4004050909636385	-4.153143623694091	ACTGACTGTCAGTCAGG
chr3	5332751	5332752	chr3:5332752:G:A	rs11130352	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr3	5332765	5332766	chr3:5332766:A:G	rs11130353	A	G	G	Sox3.mouse_HMG_3	10	1	+	0.6344250323506686	-5.973525609190129	GCTGGTTGGCAGTCATA
chr3	5756544	5756545	chr3:5756545:A:G	rs7609894	A	G	A	Sox3.mouse_HMG_3	9	1	-	1.385551985416878	1.377915308425132	AATGAGTTGTATTGAGG
chr3	6066857	6066858	chr3:6066858:T:C	rs57465575	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr3	6431664	6431665	chr3:6431665:A:C	rs156815	A	C	C	Sox3.mouse_HMG_3	2	1	-	1.4216760430295947	-5.327303918842009	AATCAATGCCATTCCAT
chr3	6529145	6529146	chr3:6529146:C:G	rs17045278	C	G	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr3	6697827	6697828	chr3:6697828:G:A	rs4263280	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	6711467	6711468	chr3:6711468:G:A	rs60658148	G	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr3	6805588	6805589	chr3:6805589:A:G	rs6803744	A	G	A	Sox3.mouse_HMG_3	10	1	+	4.518179384969837	-2.0897712565709607	TATTAATTATATACATG
chr3	7303894	7303895	chr3:7303895:A:T	rs56129834	A	T	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr3	7700724	7700725	chr3:7700725:G:A	rs3828422	G	A	G	Sox3.mouse_HMG_3	8	1	+	3.613856479094836	2.990739831917023	GATGAAAGGCATTGAAA
chr3	7854804	7854805	chr3:7854805:C:T	rs326417	C	T	t	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr3	8218997	8218998	chr3:8218998:G:A	rs6775971	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr3	8255525	8255526	chr3:8255526:T:G	rs1450327176	T	G	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr3	8415692	8415693	chr3:8415693:C:T	rs359032	C	T	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	8458939	8458940	chr3:8458940:C:G	rs79854418	C	G	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr3	8581494	8581495	chr3:8581495:T:C	rs1876610	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	8900921	8900922	chr3:8900922:G:T	rs373090	G	T	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr3	8962742	8962743	chr3:8962743:C:T	rs618784	C	T	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr3	9034407	9034408	chr3:9034408:A:G	rs146979661	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr3	9338648	9338649	chr3:9338649:G:A	rs17802367	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr3	9394901	9394902	chr3:9394902:G:A	rs62246274	G	A	G	Sox3.mouse_HMG_3	15	1	-	2.786655273901061	7.50104868561613	AATGAATTGCAGTTACC
chr3	9971588	9971589	chr3:9971589:A:G	rs3732968	A	G	A	Sox3.mouse_HMG_3	15	1	-	5.234254552718086	0.5198611410030183	ACTGAAATGCAGTCATG
chr3	10235444	10235445	chr3:10235445:C:G	rs11717636	C	G	G	Sox3.mouse_HMG_3	16	1	+	3.2355333963990565	5.289389652076357	CTTGAATTACAGGCATC
chr3	10251629	10251630	chr3:10251630:A:C	rs3846105	A	C	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr3	10392014	10392015	chr3:10392015:C:T	rs56246256	C	T	C	Sox3.mouse_HMG_3	6	1	-	1.6395521037919871	1.6395521037919871	GGAGAAGGGCATTCATC
chr3	10647939	10647940	chr3:10647940:C:A	rs7355964	C	A	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr3	10957033	10957034	chr3:10957034:C:A	rs80059062	C	A	C	Sox3.mouse_HMG_3	3	1	+	2.6947033957535416	3.66262924392936	AATCAATGGCAGGCATT
chr3	10999919	10999920	chr3:10999920:G:A	rs1568072	G	A	G	Sox3.mouse_HMG_3	3	1	+	2.4364744890867844	-3.345090398442447	AGTGAATGCCACTAATG
chr3	11173962	11173963	chr3:11173963:C:T	rs73132437	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr3	11205573	11205574	chr3:11205574:A:G	rs1874959	A	G	A	Sox3.mouse_HMG_3	1	1	+	3.02495600863194	-0.07517392780535326	CATGAATGATGTACATT
chr3	11448018	11448019	chr3:11448019:C:T	rs7644968	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	11921172	11921173	chr3:11921173:T:C	rs2014125	T	C	t	Sox3.mouse_HMG_3	14	1	-	4.482243982355764	-1.8997021840711463	CGTGAATTACATCCAAA
chr3	12139632	12139633	chr3:12139633:T:C	rs71304088	T	C	T	Sox3.mouse_HMG_3	10	1	-	2.1359837797897008	-4.471966861751096	TAGGAATTACATGCAAG
chr3	12240163	12240164	chr3:12240164:G:T	rs2439737	G	T	T	Sox3.mouse_HMG_3	3	1	+	2.1275772208441213	-4.778917263670593	AATGCCTGTTATTCAAG
chr3	12467839	12467840	chr3:12467840:T:C	rs767655744	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	12472624	12472625	chr3:12472625:A:G	rs709165	A	G	A	Sox3.mouse_HMG_3	11	1	-	8.096762283391644	2.012151457289699	GCTGGATGATATTCATG
chr3	12517688	12517689	chr3:12517689:G:A	rs17036872	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr3	12558018	12558019	chr3:12558019:G:C	rs527335404	G	C	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	13062765	13062766	chr3:13062766:T:C	rs360757	T	C	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr3	13417733	13417734	chr3:13417734:A:G	rs6769612	A	G	A	Sox3.mouse_HMG_3	6	1	-	6.560531128336384	-0.047419513204413066	TGTGACTGCTATTCAAA
chr3	13693121	13693122	chr3:13693122:C:A	rs4402916	C	A	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr3	13714798	13714799	chr3:13714799:T:C	rs111991996	T	C	T	Sox3.mouse_HMG_3	1	1	-	1.3627610825960337	-1.73736885384126	CATGAATGGTAGACCAG
chr3	13714803	13714804	chr3:13714804:G:T	rs113031999	G	T	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr3	13714808	13714809	chr3:13714809:C:A	rs62234799	C	A	c	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	13854308	13854309	chr3:13854309:T:C	rs3762721	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr3	13854319	13854320	chr3:13854320:C:G	rs3762720	C	G	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr3	13873440	13873441	chr3:13873441:T:G	rs9869134	T	G	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	13873478	13873479	chr3:13873479:C:G	rs11128664	C	G	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr3	14113952	14113953	chr3:14113953:T:C	rs9856296	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr3	14201192	14201193	chr3:14201193:C:T	rs17039107	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr3	14239369	14239370	chr3:14239370:G:T	rs4685090	G	T	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr3	14250580	14250581	chr3:14250581:G:A	rs4685095	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr3	14257127	14257128	chr3:14257128:C:T	rs6442436	C	T	C	Sox3.mouse_HMG_3	15	1	+	1.3451450421493623	6.05953845386443	GCTGAAGTGCAGTCACG
chr3	14284204	14284205	chr3:14284205:G:A	rs34995806	G	A	G	Sox3.mouse_HMG_3	3	1	+	0.8102096393460558	-4.971355248183176	CAAGACTGTCAGTCAAG
chr3	14289404	14289405	chr3:14289405:A:G	rs9869724	A	G	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr3	14296784	14296785	chr3:14296785:T:C	rs4684200	T	C	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr3	14397135	14397136	chr3:14397136:T:C	rs6442452	T	C	c	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	14428404	14428405	chr3:14428405:G:A	rs78122278	G	A	G	Sox3.mouse_HMG_3	10	1	+	1.6086813901316717	8.21663203167247	GAAGAATGCCGGTCAAT
chr3	14523509	14523510	chr3:14523510:G:A	rs4685173	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr3	14590682	14590683	chr3:14590683:C:T	rs79947800	C	T	C	Sox3.mouse_HMG_3	8	1	-	0.5435659296305635	-0.07955071754724963	GTTGAAAGGTTTTCAAG
chr3	14635165	14635166	chr3:14635166:A:G	rs73135785	A	G	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr3	14885721	14885722	chr3:14885722:A:C	rs55900850	A	C	C	Sox3.mouse_HMG_3	4	1	+	2.3213574245025814	-4.429184083616805	AGTGAATGGCATTTTTA
chr3	14949366	14949367	chr3:14949367:G:A	rs1021954279	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr3	15033516	15033517	chr3:15033517:C:T	rs3773483	C	T	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	15259193	15259194	chr3:15259194:G:A	rs10510435	G	A	A	Sox3.mouse_HMG_3	1	1	+	1.8917866452914778	4.991916581728771	TGTAACTGCTATTCATT
chr3	15272758	15272759	chr3:15272759:C:T	rs543082482	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr3	15373741	15373742	chr3:15373742:G:C	chr3:15373742:G:C	G	C	C	Sox3.mouse_HMG_3	14	1	+	5.016503991887647	5.016503991887647	TAAGAATGCCAGTCGTG
chr3	15515086	15515087	chr3:15515087:T:C	rs75149845	T	C	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr3	15796030	15796031	chr3:15796031:T:C	rs73040264	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	15933798	15933799	chr3:15933799:C:A	rs560237499	C	A	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr3	16113781	16113782	chr3:16113782:C:T	rs9874701	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	16290488	16290489	chr3:16290489:G:A	rs148771992	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	16330676	16330677	chr3:16330677:C:G	rs58824769	C	G	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	16431256	16431257	chr3:16431257:C:T	rs11720129	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr3	16521498	16521499	chr3:16521499:T:C	rs1529513	T	C	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	16565612	16565613	chr3:16565613:T:C	rs73031600	T	C	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr3	16708433	16708434	chr3:16708434:C:T	rs74931909	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	16738291	16738292	chr3:16738292:T:A	rs4296576	T	A	T	Sox3.mouse_HMG_3	1	1	+	5.3492439071224185	8.319320715311514	CTTGTATGGCAGTCATT
chr3	16762592	16762593	chr3:16762593:T:C	rs7633264	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.8843032413834122	-4.721575876847519	GATGAATTCTTTCCAGA
chr3	16923528	16923529	chr3:16923529:T:C	rs1025818	T	C	T	Sox3.mouse_HMG_3	11	1	+	2.8436000158615347	-3.241010810240409	AAGGAATTCTATTCTTT
chr3	17022897	17022898	chr3:17022898:G:T	rs79233455	G	T	G	Sox3.mouse_HMG_3	8	1	+	2.1542331376722004	1.4493307240781625	CATCTATTGCATTCATT
chr3	17045765	17045766	chr3:17045766:G:A	rs375833873	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr3	17120075	17120076	chr3:17120076:A:G	rs6442668	A	G	g	Sox3.mouse_HMG_3	4	1	+	2.3196066394323394	-4.063210088561729	CCTGAATTCTGTTCAGA
chr3	17161281	17161282	chr3:17161282:G:A	rs73819650	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr3	17193997	17193998	chr3:17193998:G:A	rs2596656	G	A	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr3	17196059	17196060	chr3:17196060:T:A	rs1030897450	T	A	T	Sox3.mouse_HMG_3	1	1	-	1.6736865394990852	-1.29639026869001	AATGAATGCTGTTGAGG
chr3	17707684	17707685	chr3:17707685:C:T	rs4566567	C	T	T	Sox3.mouse_HMG_3	3	1	+	5.245329133622246	5.088325384812581	GGTCAATGCCAGTCAAA
chr3	17833701	17833702	chr3:17833702:G:C	rs1004307	G	C	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr3	18088292	18088293	chr3:18088293:T:C	chr3:18088293:T:C	T	C	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr3	18449864	18449865	chr3:18449865:C:G	rs146807496	C	G	C	Sox3.mouse_HMG_3	16	1	-	5.487326771284724	3.433470515607423	AAAGAATTGCATTCCTG
chr3	18449874	18449875	chr3:18449875:A:G	rs57058896	A	G	A	Sox3.mouse_HMG_3	6	1	-	5.487326771284724	-1.1206238702560725	AAAGAATTGCATTCCTG
chr3	19065089	19065090	chr3:19065090:T:C	rs6800676	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr3	19146536	19146537	chr3:19146537:T:A	rs79684157	T	A	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr3	20233701	20233702	chr3:20233702:T:C	rs17191318	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr3	20669126	20669127	chr3:20669127:T:C	rs1566478	T	C	T	Sox3.mouse_HMG_3	14	1	-	4.877766089943098	-1.5041800764838127	AATGAATGTTCATCATA
chr3	20736675	20736676	chr3:20736676:C:T	rs57957027	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr3	20802522	20802523	chr3:20802523:T:C	rs2062566	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr3	20802526	20802527	chr3:20802527:T:C	rs2062565	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	20999844	20999845	chr3:20999845:T:G	rs67570653	T	G	T	Sox3.mouse_HMG_3	2	1	+	7.698016089198406	0.9490361273268008	ATTGAATGCCAGTCACT
chr3	21394235	21394236	chr3:21394236:C:T	rs79514645	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	21414677	21414678	chr3:21414678:C:T	rs376703	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr3	21414693	21414694	chr3:21414694:T:C	rs7637427	T	C	T	Sox3.mouse_HMG_3	12	1	+	2.3666083329460603	-3.8262452344547055	GATGATTGGTAGTGAAG
chr3	21438747	21438748	chr3:21438748:G:A	rs4501133	G	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	21501100	21501101	chr3:21501101:A:G	rs233169	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr3	21643722	21643723	chr3:21643723:T:C	rs115151472	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	21661381	21661382	chr3:21661382:A:G	rs1320290	A	G	a	Sox3.mouse_HMG_3	14	1	+	6.676327330005639	0.294381163578729	ACTGAATTGTTTTCATG
chr3	21752147	21752148	chr3:21752148:G:A	rs62236196	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr3	21826558	21826559	chr3:21826559:A:C	rs2670256	A	C	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	21879135	21879136	chr3:21879136:A:T	rs259550	A	T	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr3	22159547	22159548	chr3:22159548:G:C	rs141551913	G	C	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr3	22676971	22676972	chr3:22676972:C:T	rs1303791	C	T	C	Sox3.mouse_HMG_3	13	1	+	1.96745355679362	-4.6398070536684	CAAGAATTGCAGTCCTT
chr3	23056135	23056136	chr3:23056136:A:G	rs1385349749	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	23122257	23122258	chr3:23122258:T:C	rs4634143	T	C	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr3	23144353	23144354	chr3:23144354:T:G	rs138614507	T	G	T	Sox3.mouse_HMG_3	0	1	-	2.714715174008429	1.8162075760181542	AATGATTGCCATTCTAA
chr3	23315370	23315371	chr3:23315371:C:T	rs2132144	C	T	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr3	23377095	23377096	chr3:23377096:T:G	rs9859651	T	G	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr3	23391605	23391606	chr3:23391606:C:A	rs778485	C	A	A	Sox3.mouse_HMG_3	9	1	+	8.069329306250973	2.0151106817426543	AATAAATTACATTCAGG
chr3	23616538	23616539	chr3:23616539:T:G	rs6773562	T	G	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr3	23727029	23727030	chr3:23727030:A:G	rs72625868	A	G	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr3	24127821	24127822	chr3:24127822:A:T	rs2278802	A	T	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	24226214	24226215	chr3:24226215:T:A	rs851718	T	A	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	24347009	24347010	chr3:24347010:C:A	rs13072812	C	A	C	Sox3.mouse_HMG_3	15	1	-	4.576039401879225	7.698630212972466	TTTGAAATTTATTCAGA
chr3	24867891	24867892	chr3:24867892:C:T	rs145891807	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr3	24995011	24995012	chr3:24995012:C:T	rs115342535	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr3	25106005	25106006	chr3:25106006:A:G	rs7622091	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr3	25106009	25106010	chr3:25106010:T:C	rs6778399	T	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr3	25143989	25143990	chr3:25143990:A:G	rs35183943	A	G	A	Sox3.mouse_HMG_3	6	1	+	11.600525729807856	11.600525729807856	TATGAAAGATATTCATA
chr3	25283797	25283798	chr3:25283798:T:C	rs7430212	T	C	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr3	25291171	25291172	chr3:25291172:T:C	rs75262580	T	C	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr3	25371726	25371727	chr3:25371727:A:G	rs752152	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr3	25412064	25412065	chr3:25412065:C:T	rs7615918	C	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr3	25479073	25479074	chr3:25479074:A:G	rs1368262	A	G	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr3	25479090	25479091	chr3:25479091:C:A	rs1529672	C	A	C	Sox3.mouse_HMG_3	0	1	+	3.5062461046542452	4.40475370264452	CATGAATTCTGTACATA
chr3	25499420	25499421	chr3:25499421:G:C	rs75277010	G	C	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr3	25556440	25556441	chr3:25556441:C:T	rs140817964	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr3	25680279	25680280	chr3:25680280:A:G	rs73055815	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr3	26062084	26062085	chr3:26062085:A:G	rs13063917	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr3	26657365	26657366	chr3:26657366:A:C	rs11720649	A	C	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr3	26708208	26708209	chr3:26708209:T:G	rs12054097	T	G	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr3	27030118	27030119	chr3:27030119:C:G	rs2370909	C	G	C	Sox3.mouse_HMG_3	4	1	+	2.197450317894809	2.565175098020126	TCTGCATTCTAGTCAGA
chr3	27030122	27030123	chr3:27030123:C:G	rs2370910	C	G	C	Sox3.mouse_HMG_3	8	1	+	2.197450317894809	2.640232986572741	TCTGCATTCTAGTCAGA
chr3	27350054	27350055	chr3:27350055:T:C	rs4973764	T	C	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr3	27423748	27423749	chr3:27423749:G:A	rs140295984	G	A	g	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr3	27423750	27423751	chr3:27423751:T:C	rs144550371	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr3	27521701	27521702	chr3:27521702:T:C	rs73822361	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr3	27881924	27881925	chr3:27881925:C:T	rs6805319	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr3	28079314	28079315	chr3:28079315:G:A	rs959099974	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr3	28881786	28881787	chr3:28881787:C:T	rs73057974	C	T	C	Sox3.mouse_HMG_3	0	1	+	5.118762628385026	6.5736332737218905	CCTGAATTATTTTCATA
chr3	29144678	29144679	chr3:29144679:C:T	rs75881319	C	T	C	Sox3.mouse_HMG_3	7	1	-	-0.5834792736415968	-7.137027988299326	CAGGGATGCCAGTCAGG
chr3	29182070	29182071	chr3:29182071:A:G	rs9844665	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr3	29199500	29199501	chr3:29199501:A:G	rs6767257	A	G	A	Sox3.mouse_HMG_3	9	1	-	7.41757184169612	7.409935164704372	AATGAATTATATACAAT
chr3	29202742	29202743	chr3:29202743:G:T	rs2048896	G	T	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr3	29283075	29283076	chr3:29283076:G:C	rs547540076	G	C	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr3	29334656	29334657	chr3:29334657:T:C	rs61458296	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr3	29334691	29334692	chr3:29334692:G:A	rs60640803	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr3	29430811	29430812	chr3:29430812:G:A	rs2053281	G	A	A	Sox3.mouse_HMG_3	16	1	-	3.1817119893333685	4.048638728805647	TTTGAATTCCATTCTGC
chr3	29486704	29486705	chr3:29486705:T:C	rs80322015	T	C	T	Sox3.mouse_HMG_3	16	1	-	2.179998619364552	2.2159390758170776	AGTCAATGGCATGCATA
chr3	29486707	29486708	chr3:29486708:G:T	rs1260231260	G	T	G	Sox3.mouse_HMG_3	13	1	-	2.179998619364552	-4.202638054612825	AGTCAATGGCATGCATA
chr3	29606632	29606633	chr3:29606633:A:G	rs1457653	A	G	G	Sox3.mouse_HMG_3	0	1	-	3.5268551227610025	2.071984477424137	TATAAAATACAGTCATA
chr3	30027053	30027054	chr3:30027054:T:C	rs1506288	T	C	T	Sox3.mouse_HMG_3	9	1	+	2.759824869219318	2.752188192227572	AATGTATTCTATTGATT
chr3	30027070	30027071	chr3:30027071:G:T	rs1506289	G	T	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr3	30346991	30346992	chr3:30346992:C:A	rs7624205	C	A	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr3	30347701	30347702	chr3:30347702:A:T	rs78803316	A	T	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	30453598	30453599	chr3:30453599:C:T	rs921566260	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr3	30511318	30511319	chr3:30511319:C:T	rs7625124	C	T	C	Sox3.mouse_HMG_3	8	1	+	1.607517592194549	1.3453978472784431	AGAGAATGCCATTCTTT
chr3	30511619	30511620	chr3:30511620:C:T	rs143995594	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	30649165	30649166	chr3:30649166:G:T	rs3773624	G	T	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr3	30770096	30770097	chr3:30770097:A:G	rs2062775	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr3	30775011	30775012	chr3:30775012:G:T	rs7635358	G	T	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr3	30890038	30890039	chr3:30890039:C:G	rs9822397	C	G	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr3	31055857	31055858	chr3:31055858:C:T	chr3:31055858:C:T	C	T	C	Sox3.mouse_HMG_3	9	1	+	2.248562313851283	2.2561989908430298	GGTGATTGTCAGTCAGC
chr3	31164943	31164944	chr3:31164944:G:A	rs1613686	G	A	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	31275698	31275699	chr3:31275699:A:G	rs117409416	A	G	G	Sox3.mouse_HMG_3	1	1	+	2.1528524422124717	-0.9472774942248202	CATGAAGTGCATTGATT
chr3	31285048	31285049	chr3:31285049:G:A	rs78274884	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr3	31499807	31499808	chr3:31499808:G:A	rs12485487	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr3	31550829	31550830	chr3:31550830:G:A	rs542212467	G	A	G	Sox3.mouse_HMG_3	6	1	-	2.696402325303896	9.304352966844693	GATGAACTCTATTAAAA
chr3	31610892	31610893	chr3:31610893:C:A	rs187285766	C	A	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	31802128	31802129	chr3:31802129:C:T	rs149757216	C	T	c	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr3	31802179	31802180	chr3:31802180:C:G	rs114903825	C	G	c	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr3	31836418	31836419	chr3:31836419:T:C	rs113813929	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr3	31970577	31970578	chr3:31970578:C:T	rs9878129	C	T	T	Sox3.mouse_HMG_3	3	1	-	2.0361394811416647	-3.7454254063875663	GATGCATGGCTGTCAAA
chr3	32035148	32035149	chr3:32035149:T:A	rs4955127	T	A	T	Sox3.mouse_HMG_3	1	1	-	4.171535956576545	1.2014591483874502	TATGAAGTACATTTATG
chr3	32380430	32380431	chr3:32380431:G:A	rs34863445	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr3	32392741	32392742	chr3:32392742:G:A	rs59840034	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	32392763	32392764	chr3:32392764:G:A	rs75777134	G	A	G	Sox3.mouse_HMG_3	9	1	+	2.75922691217584	2.044937295042085	GTTGAATGGGAGTCACC
chr3	32392786	32392787	chr3:32392787:G:A	rs71323082	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr3	32602508	32602509	chr3:32602509:T:C	rs17029747	T	C	C	Sox3.mouse_HMG_3	5	1	-	1.554100130031549	-4.934734792039314	GATGCATGGTAGTCGGA
chr3	33140559	33140560	chr3:33140560:A:C	rs7623768	A	C	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr3	33173183	33173184	chr3:33173184:G:A	rs6793960	G	A	A	Sox3.mouse_HMG_3	13	1	-	0.8696289060981022	-5.737631704363919	GGTGATTTGTAGTCGTA
chr3	33758485	33758486	chr3:33758486:T:G	rs4679084	T	G	T	Sox3.mouse_HMG_3	11	1	+	3.9076810817897565	2.4732449814939494	CATGAATGATGTGCATA
chr3	33860640	33860641	chr3:33860641:T:C	rs113012740	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr3	34043780	34043781	chr3:34043781:G:A	rs35725816	G	A	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr3	34178518	34178519	chr3:34178519:A:G	rs17201529	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr3	34227683	34227684	chr3:34227684:A:G	rs34082876	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr3	34568822	34568823	chr3:34568823:G:A	rs9311059	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr3	34668920	34668921	chr3:34668921:C:G	rs12636214	C	G	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr3	35336809	35336810	chr3:35336810:G:A	rs4678768	G	A	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	35336842	35336843	chr3:35336843:A:C	rs4678769	A	C	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr3	35393967	35393968	chr3:35393968:A:G	rs814487	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr3	35492085	35492086	chr3:35492086:C:T	rs870776	C	T	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr3	35563031	35563032	chr3:35563032:G:T	rs1589653	G	T	G	Sox3.mouse_HMG_3	8	1	+	2.199757198665635	1.4948547850715974	TTTGGATTGTGTTCATG
chr3	35563036	35563037	chr3:35563037:C:T	rs2359625	C	T	C	Sox3.mouse_HMG_3	13	1	+	2.199757198665635	-4.407503411796385	TTTGGATTGTGTTCATG
chr3	35641943	35641944	chr3:35641944:G:A	rs4678788	G	A	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	35967189	35967190	chr3:35967190:C:A	rs10461001	C	A	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr3	36121944	36121945	chr3:36121945:T:C	rs144962571	T	C	T	Sox3.mouse_HMG_3	0	1	-	2.8488341053183603	3.6741180064647043	ACTGAAATTTATTCAGG
chr3	36363283	36363284	chr3:36363284:A:G	rs74965390	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr3	36392662	36392663	chr3:36392663:G:A	rs12636967	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr3	36531311	36531312	chr3:36531312:A:G	rs4482623	A	G	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr3	36561058	36561059	chr3:36561059:T:C	rs4678537	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr3	36908264	36908265	chr3:36908265:A:G	rs960232410	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr3	37467186	37467187	chr3:37467187:C:T	rs972607	C	T	C	Sox3.mouse_HMG_3	0	1	+	0.8731848778669513	2.3280555232038163	CGTGAGTGTCATGCATG
chr3	37475575	37475576	chr3:37475576:C:T	rs17227306	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr3	37546955	37546956	chr3:37546956:A:G	rs187892	A	G	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	37935312	37935313	chr3:37935313:A:C	rs9823784	A	C	A	Sox3.mouse_HMG_3	14	1	+	3.1739577913228807	-3.20798837510403	TATCATTTCTATTCATT
chr3	38025382	38025383	chr3:38025383:T:C	rs7627748	T	C	C	Sox3.mouse_HMG_3	6	1	+	-0.29121989996322584	-6.899170541504022	GGTGGATGGCAGTCTAG
chr3	38146502	38146503	chr3:38146503:T:C	rs172111	T	C	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr3	38228145	38228146	chr3:38228146:C:A	rs115498028	C	A	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr3	38279398	38279399	chr3:38279399:C:T	rs75856267	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr3	38355051	38355052	chr3:38355052:T:C	rs820296	T	C	C	Sox3.mouse_HMG_3	8	1	-	4.865018975684783	5.488135622862598	GAGGAATTACAGTCACA
chr3	38516824	38516825	chr3:38516825:C:T	rs7644530	C	T	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	38642798	38642799	chr3:38642799:C:T	rs80172327	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr3	39155129	39155130	chr3:39155130:C:T	rs111946296	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	39232873	39232874	chr3:39232874:G:A	rs147605270	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr3	39287886	39287887	chr3:39287887:A:G	rs115736326	A	G	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	39406880	39406881	chr3:39406881:G:C	rs148104292	G	C	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr3	39413823	39413824	chr3:39413824:G:A	rs12638378	G	A	G	Sox3.mouse_HMG_3	15	1	+	11.992321359940316	12.851102706796738	GTTGAATGGCATTCAGT
chr3	40387691	40387692	chr3:40387692:A:G	rs2305521	A	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	40398624	40398625	chr3:40398625:G:A	rs9864423	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr3	41024581	41024582	chr3:41024582:G:A	rs543133488	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr3	41053451	41053452	chr3:41053452:A:G	rs398137	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	41201185	41201186	chr3:41201186:C:T	rs77753231	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr3	41303393	41303394	chr3:41303394:A:G	rs10049199	A	G	A	Sox3.mouse_HMG_3	2	1	+	5.876462019803911	4.85481077227193	GAAGAGTGGTATTCATT
chr3	41303489	41303490	chr3:41303490:C:T	rs10049489	C	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	41411194	41411195	chr3:41411195:A:C	rs34196069	A	C	C	Sox3.mouse_HMG_3	14	1	+	6.028867063905	-0.35307910252191044	TCTGAATGGTCTTCATC
chr3	41769456	41769457	chr3:41769457:A:T	rs17280980	A	T	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr3	42024662	42024663	chr3:42024663:A:T	rs9814199	A	T	A	Sox3.mouse_HMG_3	4	1	+	3.0534004543116557	-3.554040210167055	TATGATTGCTATTGAAA
chr3	42052676	42052677	chr3:42052677:G:T	rs41460244	G	T	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr3	42059441	42059442	chr3:42059442:A:G	rs77147361	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr3	42129896	42129897	chr3:42129897:T:C	rs13071805	T	C	C	Sox3.mouse_HMG_3	5	1	-	11.299096516724127	4.810261594653263	GATGAATTTCATTCTTA
chr3	42160862	42160863	chr3:42160863:A:C	rs999058632	A	C	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	42168374	42168375	chr3:42168375:G:A	rs554905985	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr3	42185284	42185285	chr3:42185285:T:C	rs9311306	T	C	C	Sox3.mouse_HMG_3	14	1	-	5.024401306770898	-1.3575448596560147	GATGAATGTGAGTCACC
chr3	42431493	42431494	chr3:42431494:G:A	rs704966	G	A	G	Sox3.mouse_HMG_3	3	1	+	0.908969256613007	-4.872595630916223	AATGTATTGCAGTCCAG
chr3	42681777	42681778	chr3:42681778:G:A	rs74337917	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	43208804	43208805	chr3:43208805:C:A	rs9875582	C	A	A	Sox3.mouse_HMG_3	7	1	-	0.7160132185828887	-0.13401972364718273	CATGGATGGCTGTCAAG
chr3	43840660	43840661	chr3:43840661:G:A	rs4682917	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr3	43866750	43866751	chr3:43866751:T:C	rs4082418	T	C	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr3	44182903	44182904	chr3:44182904:C:T	rs4682940	C	T	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr3	44344905	44344906	chr3:44344906:A:G	rs73090412	A	G	-	Sox3.mouse_HMG_3	6	1	-	1.4297404558203048	-5.178210185720491	TGTGAATTGAATTCCTT
chr3	45085461	45085462	chr3:45085462:A:G	rs116108440	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr3	45200107	45200108	chr3:45200108:A:C	rs887744	A	C	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	45200114	45200115	chr3:45200115:A:G	rs7647073	A	G	A	Sox3.mouse_HMG_3	15	1	-	6.204118335471804	1.4897249237567367	GTTGAAGTCCATTCATC
chr3	45200129	45200130	chr3:45200130:C:G	rs245214	C	G	G	Sox3.mouse_HMG_3	0	1	-	6.204118335471804	4.480326836335186	GTTGAAGTCCATTCATC
chr3	45200136	45200137	chr3:45200137:A:G	rs245213	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr3	45253155	45253156	chr3:45253156:A:G	rs75341375	A	G	A	Sox3.mouse_HMG_3	15	1	-	4.707427586938353	-0.006965824776715479	GAGGAATGGCAGGCATG
chr3	45260917	45260918	chr3:45260918:T:C	rs33797	T	C	T	Sox3.mouse_HMG_3	6	1	+	2.4230951867351624	-4.184855454805634	AATTGATTTTATTCATT
chr3	45329408	45329409	chr3:45329409:G:C	rs62242417	G	C	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	45599427	45599428	chr3:45599428:T:C	rs2062131	T	C	T	Sox3.mouse_HMG_3	7	1	+	5.106328200337666	-0.2970829796396529	CGTGTATTTTATTCATT
chr3	45643893	45643894	chr3:45643894:G:A	rs6765732	G	A	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr3	45910185	45910186	chr3:45910186:T:C	rs12493471	T	C	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	45915936	45915937	chr3:45915937:C:T	rs9840179	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr3	45959931	45959932	chr3:45959932:C:T	rs77333392	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	46451937	46451938	chr3:46451938:C:T	rs6766188	C	T	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr3	46547209	46547210	chr3:46547210:A:G	rs9883208	A	G	G	Sox3.mouse_HMG_3	1	1	-	3.8361560148147253	2.629373309147925	GTTGAATGGCAAGCATG
chr3	46603418	46603419	chr3:46603419:T:G	rs6799581	T	G	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr3	46732019	46732020	chr3:46732020:G:T	rs59637204	G	T	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr3	46971728	46971729	chr3:46971729:T:C	rs17784031	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	47130916	47130917	chr3:47130917:T:C	rs62246443	T	C	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr3	47580719	47580720	chr3:47580720:A:G	rs3755637	A	G	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	47617996	47617997	chr3:47617997:C:T	rs1403578	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr3	49567470	49567471	chr3:49567471:G:A	rs11928090	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr3	49608529	49608530	chr3:49608530:T:C	rs868487975	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	49608566	49608567	chr3:49608567:C:T	rs112843883	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr3	50016080	50016081	chr3:50016081:C:G	rs57575459	C	G	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr3	50660109	50660110	chr3:50660110:A:G	rs78104031	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	50660723	50660724	chr3:50660724:C:T	rs12492982	C	T	C	Sox3.mouse_HMG_3	7	1	-	6.224110567781382	-0.32943814687634565	GCTGAATGCTATTCCTC
chr3	51735189	51735190	chr3:51735190:G:T	rs4687775	G	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr3	51899161	51899162	chr3:51899162:A:G	rs1847677	A	G	G	Sox3.mouse_HMG_3	2	1	-	0.9889302226442518	-5.616948895586678	TGTGAACTTCCTTCATG
chr3	51902932	51902933	chr3:51902933:T:C	rs7635125	T	C	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	51923400	51923401	chr3:51923401:C:A	rs979100427	C	A	c	Sox3.mouse_HMG_3	8	1	-	4.252515375528238	3.5476129619342	GATGGATTGTATTGATT
chr3	52220618	52220619	chr3:52220619:C:T	rs141638937	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr3	52220623	52220624	chr3:52220624:A:G	rs532061334	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	52537160	52537161	chr3:52537161:C:T	rs138748608	C	T	C	Sox3.mouse_HMG_3	6	1	-	1.6052261271911943	1.6052261271911943	GGTGAAGGGCAGGCATG
chr3	52537164	52537165	chr3:52537165:A:C	chr3:52537165:A:C	A	C	A	Sox3.mouse_HMG_3	2	1	-	1.6052261271911943	-5.143753834680411	GGTGAAGGGCAGGCATG
chr3	52600506	52600507	chr3:52600507:G:C	rs58409398	G	C	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr3	52857931	52857932	chr3:52857932:G:A	rs114377412	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr3	52873930	52873931	chr3:52873931:C:T	rs59094265	C	T	T	Sox3.mouse_HMG_3	13	1	+	5.793472698153498	-0.8137879123085215	CAGGAATTTCATTCAAT
chr3	53699840	53699841	chr3:53699841:G:A	rs7648561	G	A	G	Sox3.mouse_HMG_3	3	1	+	6.113751633082379	0.3321867455531493	TAGGAATTTTAGTCAGA
chr3	54044804	54044805	chr3:54044805:T:A	rs35734208	T	A	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	54086908	54086909	chr3:54086909:A:G	rs116500789	A	G	A	Sox3.mouse_HMG_3	2	1	-	1.6334199841299124	-4.972459134101016	TATGATTTTCACTCAGG
chr3	54131177	54131178	chr3:54131178:A:T	rs577271831	A	T	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	54269861	54269862	chr3:54269862:G:T	rs6773234	G	T	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr3	54366290	54366291	chr3:54366291:C:A	rs115396502	C	A	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr3	54374517	54374518	chr3:54374518:A:T	rs563924883	A	T	A	Sox3.mouse_HMG_3	7	1	-	3.85189858131272	-1.8516171911149355	AGTGAAGTCCATTCAAT
chr3	54383294	54383295	chr3:54383295:G:A	rs7645545	G	A	G	Sox3.mouse_HMG_3	6	1	-	0.6299236516974989	7.237874293238295	TGTGTACGACAGTCATG
chr3	54527719	54527720	chr3:54527720:T:G	rs78446385	T	G	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	54863667	54863668	chr3:54863668:T:A	rs187998204	T	A	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	55074834	55074835	chr3:55074835:A:G	rs17323229	A	G	A	Sox3.mouse_HMG_3	7	1	-	1.969551546626257	-3.4338596333510596	TATGATTTTCATTGAAG
chr3	55145278	55145279	chr3:55145279:C:T	rs56070844	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr3	55296012	55296013	chr3:55296013:G:A	rs67380230	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr3	55331264	55331265	chr3:55331265:G:A	rs9834227	G	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	55529315	55529316	chr3:55529316:T:C	rs1875110	T	C	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr3	55667539	55667540	chr3:55667540:T:C	rs9826672	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr3	55667542	55667543	chr3:55667543:A:C	rs9844301	A	C	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	55747936	55747937	chr3:55747937:T:G	rs1390196	T	G	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr3	55790839	55790840	chr3:55790840:G:T	rs62249348	G	T	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr3	56076994	56076995	chr3:56076995:T:C	rs10510779	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr3	56111686	56111687	chr3:56111687:T:G	chr3:56111687:T:G	T	G	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr3	56209178	56209179	chr3:56209179:C:T	rs10433552	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	56257668	56257669	chr3:56257669:T:G	rs34392996	T	G	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	56278111	56278112	chr3:56278112:C:G	rs2167618	C	G	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr3	56302698	56302699	chr3:56302699:C:T	rs115233160	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	56557458	56557459	chr3:56557459:A:G	rs373566721	A	G	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr3	56557479	56557480	chr3:56557480:C:A	rs73079894	C	A	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr3	56557492	56557493	chr3:56557493:C:G	rs75127739	C	G	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	56801063	56801064	chr3:56801064:C:T	rs62249769	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr3	56984149	56984150	chr3:56984150:A:C	rs6809587	A	C	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr3	57021179	57021180	chr3:57021180:T:C	rs142547657	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr3	57175168	57175169	chr3:57175169:T:G	rs6445860	T	G	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr3	57681799	57681800	chr3:57681800:T:C	rs73086499	T	C	T	Sox3.mouse_HMG_3	14	1	-	1.0324999864256577	-5.349446180001253	TCTGTATGCTTTTCATG
chr3	57892052	57892053	chr3:57892053:A:G	rs76674295	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr3	57983950	57983951	chr3:57983951:C:T	rs143347982	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	58196843	58196844	chr3:58196844:G:T	rs186673759	G	T	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr3	58222221	58222222	chr3:58222222:C:T	rs17059047	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr3	58423335	58423336	chr3:58423336:T:C	rs12631656	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr3	58463516	58463517	chr3:58463517:T:C	rs13066269	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr3	58562451	58562452	chr3:58562452:C:G	chr3:58562452:C:G	C	G	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr3	58568702	58568703	chr3:58568703:A:T	rs72876121	A	T	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr3	58568706	58568707	chr3:58568707:C:T	rs73838047	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr3	58640514	58640515	chr3:58640515:T:C	rs3749288	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr3	58708023	58708024	chr3:58708024:T:C	rs868110123	T	C	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr3	58824314	58824315	chr3:58824315:C:T	rs900902248	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr3	59304504	59304505	chr3:59304505:G:A	rs541326232	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr3	59304511	59304512	chr3:59304512:T:C	rs11928900	T	C	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr3	59334876	59334877	chr3:59334877:A:G	rs115220787	A	G	A	Sox3.mouse_HMG_3	10	1	+	9.157974058255729	2.5500234167149296	AATGAATTACAGGCATG
chr3	59422250	59422251	chr3:59422251:G:C	rs9822284	G	C	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	59453540	59453541	chr3:59453541:G:C	rs57752760	G	C	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	59453558	59453559	chr3:59453559:A:G	rs6795120	A	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr3	59758936	59758937	chr3:59758937:A:T	rs2605436	A	T	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr3	59775528	59775529	chr3:59775529:T:A	rs493783	T	A	A	Sox3.mouse_HMG_3	10	1	-	10.627515372513871	3.876463887332399	GATGATTTGCATTCATT
chr3	60060074	60060075	chr3:60060075:T:C	rs7638558	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr3	60179100	60179101	chr3:60179101:G:A	rs12492663	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr3	60190044	60190045	chr3:60190045:T:C	rs150484099	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr3	60228076	60228077	chr3:60228077:A:G	rs9832192	A	G	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	60283999	60284000	chr3:60284000:A:G	rs17062684	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr3	60324742	60324743	chr3:60324743:G:T	rs1882900	G	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	60580101	60580102	chr3:60580102:A:G	rs72887608	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	60622504	60622505	chr3:60622505:T:C	rs72889659	T	C	T	Sox3.mouse_HMG_3	11	1	+	4.117284004383944	-1.967326821718002	TGTGAATTGTATCCACA
chr3	60936073	60936074	chr3:60936074:T:C	rs78693890	T	C	T	Sox3.mouse_HMG_3	12	1	+	5.206998016777896	-0.9858555506228696	CATGAAAGTCAGTCAAT
chr3	61057379	61057380	chr3:61057380:T:C	rs17064376	T	C	T	Sox3.mouse_HMG_3	1	1	-	3.4957021578396628	0.3955722214023696	TATGGATGCCATTCCAA
chr3	61160589	61160590	chr3:61160590:C:T	rs9827045	C	T	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr3	61222527	61222528	chr3:61222528:G:A	rs17064660	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr3	61287867	61287868	chr3:61287868:C:T	rs1349798	C	T	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr3	61287889	61287890	chr3:61287890:T:C	rs1349799	T	C	C	Sox3.mouse_HMG_3	5	1	-	4.727070407625184	-1.761764514445681	AAGGAATTGCACTCATA
chr3	61296465	61296466	chr3:61296466:C:A	rs9877709	C	A	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	61371293	61371294	chr3:61371294:G:A	rs111267432	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr3	61467494	61467495	chr3:61467495:G:A	rs12152314	G	A	G	Sox3.mouse_HMG_3	15	1	+	4.251580766704915	5.110362113561336	GTTGAATTGCAGTTAGA
chr3	61597156	61597157	chr3:61597157:C:T	rs7612843	C	T	C	Sox3.mouse_HMG_3	0	1	-	2.1552941122483045	1.3300102111019603	GATTAATGTCATTAAGG
chr3	61646708	61646709	chr3:61646709:T:C	rs35540480	T	C	T	Sox3.mouse_HMG_3	15	1	+	3.918165513042175	-0.796227898672893	TATGCATTTTTTTCATA
chr3	61674894	61674895	chr3:61674895:T:G	rs7619562	T	G	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr3	61709253	61709254	chr3:61709254:A:G	rs73099140	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	61808754	61808755	chr3:61808755:A:G	rs1287239188	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr3	61904014	61904015	chr3:61904015:T:G	rs1881940	T	G	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr3	61928187	61928188	chr3:61928188:A:G	rs12715574	A	G	G	Sox3.mouse_HMG_3	14	1	+	0.7981458157494232	-5.583800350677487	GTTGAGTGGCCTTCAAG
chr3	61976106	61976107	chr3:61976107:A:G	rs151153258	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr3	61976127	61976128	chr3:61976128:C:T	rs4260433	C	T	C	Sox3.mouse_HMG_3	0	1	-	1.3011209867594713	0.4758370856131271	GCTGAAATGCATCCATG
chr3	62036533	62036534	chr3:62036534:C:T	rs9815544	C	T	C	Sox3.mouse_HMG_3	8	1	+	1.155839609862815	0.8937198649467091	CATGAAATCCACTCAAG
chr3	62101705	62101706	chr3:62101706:T:G	rs4688284	T	G	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr3	62607869	62607870	chr3:62607870:C:T	rs137931214	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	62607896	62607897	chr3:62607897:A:T	rs76457110	A	T	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr3	63086486	63086487	chr3:63086487:A:G	rs2121673	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.5636416177634846	-5.044309023777312	CAGGAATGGTAATCAGA
chr3	63088704	63088705	chr3:63088705:T:C	rs4688371	T	C	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr3	63089590	63089591	chr3:63089591:C:T	rs1374679	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr3	63128121	63128122	chr3:63128122:T:C	rs79278930	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	63224160	63224161	chr3:63224161:G:T	rs35860039	G	T	G	Sox3.mouse_HMG_3	0	1	+	-0.39636677393502073	-0.6652876277347739	GGTGAGTGGCAGGCAAG
chr3	63310745	63310746	chr3:63310746:A:G	rs4688392	A	G	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	63321063	63321064	chr3:63321064:T:A	rs7647850	T	A	G	Sox3.mouse_HMG_3	8	1	-	6.4596987127097165	6.377912946293493	TAAGAATGACATCCATG
chr3	63364987	63364988	chr3:63364988:A:G	rs2198137	A	G	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr3	63561644	63561645	chr3:63561645:T:A	rs4277682	T	A	T	Sox3.mouse_HMG_3	14	1	-	3.14895988562599	-3.2329862808009215	GATGCATGGCTGTCATT
chr3	63610600	63610601	chr3:63610601:A:C	rs6445369	A	C	C	Sox3.mouse_HMG_3	3	1	+	3.3234008472360026	2.355474999060184	AATAATTTTTATTCATT
chr3	63757253	63757254	chr3:63757254:T:G	rs9859021	T	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr3	63769352	63769353	chr3:63769353:C:A	rs17069353	C	A	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr3	63896799	63896800	chr3:63896800:T:C	rs3774709	T	C	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr3	63908179	63908180	chr3:63908180:A:T	chr3:63908180:A:T	A	T	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr3	64067111	64067112	chr3:64067112:G:T	rs12493866	G	T	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr3	64077916	64077917	chr3:64077917:C:T	rs1450983	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr3	64214932	64214933	chr3:64214933:T:C	rs991929474	T	C	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr3	64319013	64319014	chr3:64319014:A:G	rs58042464	A	G	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr3	64384548	64384549	chr3:64384549:A:T	rs13062075	A	T	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr3	64411668	64411669	chr3:64411669:C:T	rs920780	C	T	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr3	64652119	64652120	chr3:64652120:T:C	rs767497376	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr3	64652146	64652147	chr3:64652147:T:C	rs9853285	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr3	64976945	64976946	chr3:64976946:T:C	rs1878633	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr3	65082472	65082473	chr3:65082473:C:T	rs1482596	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr3	65236776	65236777	chr3:65236777:C:T	rs73128411	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr3	65269051	65269052	chr3:65269052:A:G	rs12639584	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	65479329	65479330	chr3:65479330:G:C	rs12637472	G	C	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr3	65535648	65535649	chr3:65535649:A:G	rs17073070	A	G	A	Sox3.mouse_HMG_3	5	1	+	9.953756985233525	3.4649220631626596	TATCAATGGCATTCAAA
chr3	65585024	65585025	chr3:65585025:C:G	rs7653877	C	G	G	Sox3.mouse_HMG_3	1	1	+	0.9913301004640886	2.0680596778826903	ACTGAATGCCTATCATG
chr3	65625926	65625927	chr3:65625927:T:C	rs17073219	T	C	T	Sox3.mouse_HMG_3	16	1	+	1.5439378560718762	0.6770111165995973	AATGTATTCCAGGCATT
chr3	65627310	65627311	chr3:65627311:C:T	rs60581715	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	65756681	65756682	chr3:65756682:A:T	rs6789531	A	T	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr3	65958390	65958391	chr3:65958391:G:A	rs9880270	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr3	66000623	66000624	chr3:66000624:A:G	rs115979085	A	G	A	Sox3.mouse_HMG_3	15	1	+	1.828891800896916	0.9701104540404955	GATGAAAGGTATTCCAC
chr3	66011351	66011352	chr3:66011352:C:G	rs17074297	C	G	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr3	66016202	66016203	chr3:66016203:C:T	rs73833344	C	T	T	Sox3.mouse_HMG_3	3	1	-	1.9950877326537024	-3.786477154875529	AATGACTGATAGTTATT
chr3	66581420	66581421	chr3:66581421:C:T	rs4856951	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr3	66789912	66789913	chr3:66789913:A:G	rs9822249	A	G	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr3	66797983	66797984	chr3:66797984:T:C	rs58161562	T	C	T	Sox3.mouse_HMG_3	14	1	-	6.867397473955302	0.48545130752839183	GTTGAATTAGAGTCATT
chr3	66823218	66823219	chr3:66823219:C:T	rs147814410	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr3	66890298	66890299	chr3:66890299:T:C	rs17045469	T	C	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	67212813	67212814	chr3:67212814:G:A	rs4128751	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr3	67383394	67383395	chr3:67383395:T:G	rs75660469	T	G	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	67462433	67462434	chr3:67462434:T:C	rs72918998	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr3	67496339	67496340	chr3:67496340:T:C	rs73088934	T	C	T	Sox3.mouse_HMG_3	6	1	+	9.9609723695881	3.3530217280473043	TATGAATTACATTCTTT
chr3	67504517	67504518	chr3:67504518:G:A	rs9872341	G	A	A	Sox3.mouse_HMG_3	8	1	-	1.1498689575622154	0.8877492126461096	GCTGAAATCCATTCACT
chr3	67643055	67643056	chr3:67643056:G:C	rs6798228	G	C	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr3	68518271	68518272	chr3:68518272:C:A	rs9647394	C	A	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr3	68538732	68538733	chr3:68538733:A:C	rs3828366	A	C	A	Sox3.mouse_HMG_3	16	1	+	1.4741299992008314	-0.5437858000239437	GATGAATTGCAAACACA
chr3	68666747	68666748	chr3:68666748:G:A	rs6781321	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	68744586	68744587	chr3:68744587:T:C	rs9682904	T	C	C	Sox3.mouse_HMG_3	12	1	+	5.58665482992409	-0.6061987374766764	GATAAATTCCAGTCAGC
chr3	68992383	68992384	chr3:68992384:G:A	rs12495686	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr3	69252858	69252859	chr3:69252859:A:G	rs2170801	A	G	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	69255961	69255962	chr3:69255962:T:C	rs9310143	T	C	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	69431886	69431887	chr3:69431887:T:C	rs9831196	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	69521476	69521477	chr3:69521477:G:T	rs11915976	G	T	G	Sox3.mouse_HMG_3	8	1	+	2.5867348409749034	1.8818324273808655	TACTAATTGCATTCATC
chr3	69629281	69629282	chr3:69629282:T:C	rs12486558	T	C	T	Sox3.mouse_HMG_3	0	1	+	6.255563699093532	4.800693053756666	TGTGAATTGTCTTCATC
chr3	69867793	69867794	chr3:69867794:C:T	rs76437415	C	T	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr3	69972747	69972748	chr3:69972748:A:C	rs6549254	A	C	A	Sox3.mouse_HMG_3	3	1	+	3.0064325318669374	2.0385066836911188	AATAAAATACAGTCATG
chr3	69986716	69986717	chr3:69986717:A:G	rs9840590	A	G	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr3	70251057	70251058	chr3:70251058:G:C	rs9814331	G	C	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	70283637	70283638	chr3:70283638:G:A	rs2049223	G	A	A	Sox3.mouse_HMG_3	16	1	+	0.2744435183569247	0.23850306190439907	GATTAAAGGGATTCATG
chr3	70557066	70557067	chr3:70557067:A:G	rs115469594	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	71102067	71102068	chr3:71102068:C:T	rs831436	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	71217980	71217981	chr3:71217981:G:A	rs1260144937	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr3	71220314	71220315	chr3:71220315:C:T	rs6549384	C	T	T	Sox3.mouse_HMG_3	7	1	-	6.036471232432801	-0.5170774822249278	GAGAAATGTCATTCATG
chr3	71247426	71247427	chr3:71247427:G:C	rs11712599	G	C	G	Sox3.mouse_HMG_3	9	1	-	1.0056773648511061	-4.334251642523458	AATCAATGGCATTCCGT
chr3	71247427	71247428	chr3:71247428:C:T	rs11720738	C	T	C	Sox3.mouse_HMG_3	8	1	-	1.0056773648511061	0.3825607176732929	AATCAATGGCATTCCGT
chr3	71524899	71524900	chr3:71524900:C:T	rs6764416	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	71578002	71578003	chr3:71578003:T:C	rs114458938	T	C	T	Sox3.mouse_HMG_3	16	1	-	3.8133041135321797	3.8492445699847053	TATAGATTTCAGTCATA
chr3	71701509	71701510	chr3:71701510:C:G	rs9790291	C	G	G	Sox3.mouse_HMG_3	12	1	+	7.624664214373376	7.4364429354522334	TATGAATGCTATCCACA
chr3	71711723	71711724	chr3:71711724:C:T	rs2029011	C	T	C	Sox3.mouse_HMG_3	4	1	-	6.186155368394474	12.568972096388546	ATTGGATTACAGTCATG
chr3	71718228	71718229	chr3:71718229:A:T	rs71298399	A	T	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr3	71797679	71797680	chr3:71797680:G:A	rs2322152	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr3	71951562	71951563	chr3:71951563:C:T	rs7642104	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr3	72044116	72044117	chr3:72044117:C:T	rs9840466	C	T	T	Sox3.mouse_HMG_3	11	1	-	1.9071257842564815	-2.743048941549657	GGCAAATGCCAGTCATG
chr3	72082742	72082743	chr3:72082743:A:T	rs2322273	A	T	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr3	72082749	72082750	chr3:72082750:A:G	rs2322274	A	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr3	72082774	72082775	chr3:72082775:A:G	rs2322275	A	G	a	Sox3.mouse_HMG_3	14	1	+	4.258097656151196	-2.1238485102757143	TATGAATCTTATTTATT
chr3	72114796	72114797	chr3:72114797:A:G	rs4677092	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr3	72211786	72211787	chr3:72211787:C:T	rs9822424	C	T	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	72296401	72296402	chr3:72296402:A:G	rs6549451	A	G	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr3	72296407	72296408	chr3:72296408:G:A	rs6809642	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr3	72296452	72296453	chr3:72296453:G:A	rs35966936	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr3	72397922	72397923	chr3:72397923:G:A	rs753317	G	A	G	Sox3.mouse_HMG_3	3	1	+	2.0584167330591923	-3.7231481544700396	TTTGAGTTCCATCCATG
chr3	72659692	72659693	chr3:72659693:G:C	rs17010085	G	C	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr3	72890615	72890616	chr3:72890616:C:T	rs6807627	C	T	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr3	72965747	72965748	chr3:72965748:G:A	rs4569580	G	A	G	Sox3.mouse_HMG_3	5	1	-	2.8843244264303465	2.8843244264303465	GTTGACTGTTATACATG
chr3	73037239	73037240	chr3:73037240:A:C	rs79773690	A	C	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr3	73149128	73149129	chr3:73149129:A:G	chr3:73149129:A:G	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr3	73158827	73158828	chr3:73158828:T:A	rs13090213	T	A	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr3	73296057	73296058	chr3:73296058:A:G	rs115010662	A	G	A	Sox3.mouse_HMG_3	12	1	-	6.104836726854258	-0.08801684054650794	TGTGAATAACAGTCATT
chr3	73378523	73378524	chr3:73378524:A:G	rs75176320	A	G	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr3	73423181	73423182	chr3:73423182:T:C	rs571629786	T	C	T	Sox3.mouse_HMG_3	9	1	+	2.632463895782176	2.62482721879043	TATGAAGGATAGTAATT
chr3	73466027	73466028	chr3:73466028:C:T	rs62246079	C	T	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr3	73552364	73552365	chr3:73552365:G:A	rs114302032	G	A	G	Sox3.mouse_HMG_3	3	1	+	3.2036277606897885	-2.5779371268394415	CATGAAGTGTCTTCATG
chr3	73569237	73569238	chr3:73569238:G:C	rs78584400	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	73591127	73591128	chr3:73591128:T:C	rs11128348	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr3	73766994	73766995	chr3:73766995:T:C	rs75821821	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr3	73773559	73773560	chr3:73773560:G:T	rs291538	G	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr3	73813381	73813382	chr3:73813382:C:T	rs560495302	C	T	C	Sox3.mouse_HMG_3	15	1	+	3.81230071049036	8.526694122205427	GGTGAATTTAATTCACA
chr3	74059516	74059517	chr3:74059517:T:C	rs6798236	T	C	C	Sox3.mouse_HMG_3	6	1	+	2.0432044277389863	-4.564746213801811	GAAGAATGGCTTTCACA
chr3	74059517	74059518	chr3:74059518:G:T	rs77285912	G	T	G	Sox3.mouse_HMG_3	7	1	+	2.0432044277389863	1.1931714855089148	GAAGAATGGCTTTCACA
chr3	74211493	74211494	chr3:74211494:A:G	rs61266041	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	74468004	74468005	chr3:74468005:C:G	rs7429595	C	G	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr3	74468024	74468025	chr3:74468025:A:G	rs1037385826	A	G	A	Sox3.mouse_HMG_3	15	1	+	1.609371421210449	0.7505900743540285	GAAGAATGCCAGTTAAT
chr3	74474120	74474121	chr3:74474121:C:T	rs6549599	C	T	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr3	74515664	74515665	chr3:74515665:C:A	rs7430822	C	A	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr3	74577143	74577144	chr3:74577144:G:A	rs13077765	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	75280943	75280944	chr3:75280944:C:T	rs79871787	C	T	c	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	75428116	75428117	chr3:75428117:G:T	rs36048024	G	T	.	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	75462225	75462226	chr3:75462226:G:A	rs35215758	G	A	.	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr3	76724963	76724964	chr3:76724964:A:T	rs59134157	A	T	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr3	76841269	76841270	chr3:76841270:A:C	rs6775462	A	C	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr3	77113498	77113499	chr3:77113499:G:A	rs116013070	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr3	77119039	77119040	chr3:77119040:G:C	rs7649552	G	C	C	Sox3.mouse_HMG_3	0	1	+	6.928338134363332	5.204546635226712	GATGAATGGTAGTGAGT
chr3	77255273	77255274	chr3:77255274:G:C	rs139723268	G	C	g	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr3	77693735	77693736	chr3:77693736:C:T	rs12054007	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr3	77772827	77772828	chr3:77772828:C:T	rs28469660	C	T	C	Sox3.mouse_HMG_3	3	1	+	1.4424644943752656	1.285460745565601	TCCCAATGGTATTCATA
chr3	78533560	78533561	chr3:78533561:A:G	rs4470471	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr3	78707652	78707653	chr3:78707653:G:A	rs984138	G	A	G	Sox3.mouse_HMG_3	14	1	-	0.9427827111641796	0.9427827111641796	GATGAATGGGATTTCTG
chr3	78741208	78741209	chr3:78741209:C:T	rs79830639	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	79056729	79056730	chr3:79056730:G:A	rs190027588	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	79518123	79518124	chr3:79518124:T:C	rs7626242	T	C	T	Sox3.mouse_HMG_3	1	1	-	4.355884055463843	1.2557541190265513	TATGAAATCTAGTCAGC
chr3	80005846	80005847	chr3:80005847:C:T	rs9825395	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr3	80283990	80283991	chr3:80283991:G:A	rs9871716	G	A	g	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr3	80408202	80408203	chr3:80408203:C:A	rs925681	C	A	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr3	80408212	80408213	chr3:80408213:G:A	rs925680	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr3	80507247	80507248	chr3:80507248:A:C	rs7630175	A	C	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	81162044	81162045	chr3:81162045:G:A	rs74864243	G	A	G	Sox3.mouse_HMG_3	13	1	-	4.131082956935112	-2.4761776535269076	AGTGAATGTCATCCAAC
chr3	81193936	81193937	chr3:81193937:A:G	rs1540588	A	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr3	81216381	81216382	chr3:81216382:G:C	rs7613151	G	C	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr3	81218382	81218383	chr3:81218383:T:C	rs17018692	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	81236936	81236937	chr3:81236937:A:T	rs745476471	A	T	A	Sox3.mouse_HMG_3	10	1	+	1.6700649365675846	-5.080986548613886	AATGAGTAGCAGTCAAA
chr3	81393870	81393871	chr3:81393871:T:A	rs34539016	T	A	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr3	81601691	81601692	chr3:81601692:T:G	rs751334443	T	G	T	Sox3.mouse_HMG_3	11	1	+	5.141022554228783	3.7065864539329767	TATAAATTACATTTATG
chr3	81955936	81955937	chr3:81955937:T:C	rs6548788	T	C	C	Sox3.mouse_HMG_3	1	1	-	2.5609151888515607	-0.5392147475857317	CAAGATTTATATTCATT
chr3	82304322	82304323	chr3:82304323:G:A	rs13064651	G	A	G	Sox3.mouse_HMG_3	12	1	+	7.388033581042068	7.656297567636749	AATGAATTTCATGCAGG
chr3	82656824	82656825	chr3:82656825:G:T	rs1477835	G	T	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr3	82939418	82939419	chr3:82939419:T:C	rs6782805	T	C	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr3	83141267	83141268	chr3:83141268:T:C	rs1356629	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	83221642	83221643	chr3:83221643:T:G	rs11714817	T	G	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	84042802	84042803	chr3:84042803:A:G	rs9873895	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr3	84042816	84042817	chr3:84042817:A:T	rs77392057	A	T	A	Sox3.mouse_HMG_3	11	1	-	2.839753674318703	-3.2448571517832425	GTTTAATGCCATACATG
chr3	85571859	85571860	chr3:85571860:A:G	rs57276248	A	G	A	Sox3.mouse_HMG_3	14	1	+	8.040737319100398	1.6587911526734882	CATGACTTATAGTCATG
chr3	85617466	85617467	chr3:85617467:C:T	rs9880010	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr3	85627207	85627208	chr3:85627208:G:A	rs55873202	G	A	G	Sox3.mouse_HMG_3	13	1	-	8.219350889898571	1.6120902794365515	CCTGAATTGTATTCAGT
chr3	86177196	86177197	chr3:86177197:T:G	rs7625548	T	G	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	86229800	86229801	chr3:86229801:T:C	rs13063456	T	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr3	86243467	86243468	chr3:86243468:T:C	rs932057	T	C	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	86511468	86511469	chr3:86511469:T:C	rs1494302	T	C	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	86653565	86653566	chr3:86653566:T:C	rs9869426	T	C	C	Sox3.mouse_HMG_3	2	1	+	3.909949084543343	-2.6959300336875875	AATGTATTTTATTCCTG
chr3	86653656	86653657	chr3:86653657:A:G	rs9811859	A	G	A	Sox3.mouse_HMG_3	8	1	-	2.1551670432101195	2.4172867881262254	GAAGAATGTTATTAAGT
chr3	86793501	86793502	chr3:86793502:C:T	rs59662471	C	T	T	Sox3.mouse_HMG_3	1	1	-	1.1955443015560574	4.29567423799335	GGTGAATGGTATAGAAG
chr3	86936902	86936903	chr3:86936903:C:A	rs4859084	C	A	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr3	86971401	86971402	chr3:86971402:C:A	rs17023716	C	A	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr3	86978409	86978410	chr3:86978410:A:G	rs1946747	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr3	87126347	87126348	chr3:87126348:C:T	rs77171792	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr3	87308438	87308439	chr3:87308439:C:T	rs1845427	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	87318186	87318187	chr3:87318187:A:T	rs2646238	A	T	T	Sox3.mouse_HMG_3	5	1	+	1.7563213599776588	-4.8511193045010526	AATGAAGTCCATTAAAG
chr3	87502664	87502665	chr3:87502665:G:A	rs1509783	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr3	88031712	88031713	chr3:88031713:T:C	chr3:88031713:T:C	T	C	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr3	88035017	88035018	chr3:88035018:G:C	chr3:88035018:G:C	G	C	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr3	88406348	88406349	chr3:88406349:G:A	rs1463473	G	A	A	Sox3.mouse_HMG_3	11	1	-	6.155838472880143	12.240449298982089	ACTGAATTGTACTCATT
chr3	88990810	88990811	chr3:88990811:G:A	rs6803153	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr3	89740937	89740938	chr3:89740938:T:C	rs72912079	T	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr3	89740980	89740981	chr3:89740981:C:T	rs79233031	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr3	94520880	94520881	chr3:94520881:G:A	rs9832797	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr3	95435054	95435055	chr3:95435055:T:C	rs6785886	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr3	95594725	95594726	chr3:95594726:G:C	rs7428249	G	C	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr3	95927210	95927211	chr3:95927211:T:A	rs7639257	T	A	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr3	95929467	95929468	chr3:95929468:C:A	rs9845093	C	A	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr3	96312801	96312802	chr3:96312802:T:A	rs1514435	T	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr3	96753529	96753530	chr3:96753530:G:C	rs79813534	G	C	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr3	97205527	97205528	chr3:97205528:T:C	rs79592798	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	97485698	97485699	chr3:97485699:T:C	rs13061165	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr3	97795373	97795374	chr3:97795374:G:A	rs4857292	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr3	97956265	97956266	chr3:97956266:C:T	rs74726303	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr3	97965909	97965910	chr3:97965910:G:A	rs9877544	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr3	97988818	97988819	chr3:97988819:G:A	rs9813695	G	A	g	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	98162472	98162473	chr3:98162473:C:G	rs75696957	C	G	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr3	98189004	98189005	chr3:98189005:A:G	rs13083770	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr3	98199769	98199770	chr3:98199770:C:T	rs9879316	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr3	98360634	98360635	chr3:98360635:C:T	rs9882458	C	T	.	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr3	98548813	98548814	chr3:98548814:C:G	chr3:98548814:C:G	C	G	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	98726479	98726480	chr3:98726480:A:G	rs865474	A	G	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr3	98898312	98898313	chr3:98898313:G:T	rs73138082	G	T	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr3	99013926	99013927	chr3:99013927:A:G	rs80057660	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	99052240	99052241	chr3:99052241:A:G	rs17313	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr3	99331002	99331003	chr3:99331003:A:G	rs72936399	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr3	99331013	99331014	chr3:99331014:G:A	rs71313533	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	99410170	99410171	chr3:99410171:G:T	rs2623321	G	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr3	99639554	99639555	chr3:99639555:C:T	rs2280504	C	T	T	Sox3.mouse_HMG_3	11	1	-	4.093931478031186	-0.5562432477749522	ATTGGATGCCAGTCAGG
chr3	99952518	99952519	chr3:99952519:G:A	rs557407193	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr3	99958391	99958392	chr3:99958392:G:A	rs138750432	G	A	G	Sox3.mouse_HMG_3	11	1	+	0.926300884301408	-3.723873841504731	TGTTAATGCCAGCCATG
chr3	100008422	100008423	chr3:100008423:C:A	rs142813823	C	A	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr3	100023356	100023357	chr3:100023357:C:T	rs528851638	C	T	C	Sox3.mouse_HMG_3	0	1	+	2.3510910843953923	3.8059617297322568	CATGGATGGCAGCCATT
chr3	100082783	100082784	chr3:100082784:A:C	rs13069311	A	C	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr3	100278079	100278080	chr3:100278080:C:T	rs61095099	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr3	100497303	100497304	chr3:100497304:T:C	rs6789867	T	C	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr3	100497324	100497325	chr3:100497325:T:C	rs60071944	T	C	T	Sox3.mouse_HMG_3	14	1	-	0.8907240361570126	-5.4912221302698985	ACTGAATGCTCTCCATG
chr3	100559171	100559172	chr3:100559172:A:G	rs6441329	A	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr3	100591750	100591751	chr3:100591751:C:T	rs6771421	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr3	100609326	100609327	chr3:100609327:C:A	rs76584155	C	A	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr3	100892768	100892769	chr3:100892769:C:T	rs11715875	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr3	100941205	100941206	chr3:100941206:G:T	rs73143064	G	T	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr3	101791789	101791790	chr3:101791790:C:T	rs9873837	C	T	C	Sox3.mouse_HMG_3	13	1	+	2.11821257378215	-4.48904803667987	AATGACTTCTATTCCTC
chr3	101900936	101900937	chr3:101900937:C:T	rs73865932	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	101941808	101941809	chr3:101941809:A:C	rs186876131	A	C	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr3	101994540	101994541	chr3:101994541:C:T	rs58133416	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	102035537	102035538	chr3:102035538:T:G	rs708232	T	G	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr3	102089281	102089282	chr3:102089282:G:A	rs1996523	G	A	g	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr3	102142031	102142032	chr3:102142032:A:C	rs79782087	A	C	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr3	102258499	102258500	chr3:102258500:C:T	rs34264319	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr3	102401411	102401412	chr3:102401412:G:A	rs114954084	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr3	102410789	102410790	chr3:102410790:T:C	rs141627861	T	C	T	Sox3.mouse_HMG_3	15	1	-	1.5131217216251371	0.6543403747687166	CAAGAAATCCATTCAAG
chr3	102591576	102591577	chr3:102591577:G:T	rs1284732	G	T	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr3	102600366	102600367	chr3:102600367:A:G	rs1284742	A	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr3	102904741	102904742	chr3:102904742:T:G	rs345586	T	G	T	Sox3.mouse_HMG_3	10	1	-	1.061859399927129	-5.689192085254342	CGTGAATGACATGCCTG
chr3	102977977	102977978	chr3:102977978:G:A	rs573766367	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr3	103372226	103372227	chr3:103372227:C:G	rs78760510	C	G	C	Sox3.mouse_HMG_3	13	1	+	1.9156439571061288	-4.691616653355892	TGTGATTGGCATCCATT
chr3	103510881	103510882	chr3:103510882:A:G	rs76928059	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	103842868	103842869	chr3:103842869:A:G	rs9850509	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr3	103845386	103845387	chr3:103845387:T:C	rs2608481	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr3	103889551	103889552	chr3:103889552:T:G	rs139249327	T	G	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr3	104263108	104263109	chr3:104263109:T:G	rs12497491	T	G	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr3	104876945	104876946	chr3:104876946:C:T	rs7646548	C	T	C	Sox3.mouse_HMG_3	12	1	-	4.6271045133189475	4.895368499913628	AGTGAATTGCAGGCATC
chr3	104876967	104876968	chr3:104876968:C:T	rs9825536	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr3	104880089	104880090	chr3:104880090:G:A	rs11921861	G	A	G	Sox3.mouse_HMG_3	3	1	+	2.1311597872975314	-3.6504051002316986	AATGAATGTCAGTTTTT
chr3	104948125	104948126	chr3:104948126:A:C	rs6806605	A	C	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	104948131	104948132	chr3:104948132:T:C	rs13066237	T	C	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	105144121	105144122	chr3:105144122:G:A	rs72996507	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr3	105174121	105174122	chr3:105174122:T:C	rs146898427	T	C	T	Sox3.mouse_HMG_3	2	1	+	2.815347300402881	-3.790531817828049	TGTGAAAGCTATTCACT
chr3	105174139	105174140	chr3:105174140:A:G	rs16850936	A	G	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr3	105285072	105285073	chr3:105285073:A:G	rs1716142	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	105394392	105394393	chr3:105394393:T:A	chr3:105394393:T:A	T	A	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr3	105394392	105394393	chr3:105394393:T:C	rs4894924	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr3	105606026	105606027	chr3:105606027:T:C	rs2120582	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr3	105618513	105618514	chr3:105618514:A:G	rs11716217	A	G	A	Sox3.mouse_HMG_3	12	1	-	4.1819436224005635	-2.0109099450002033	TAGGAGTTTTATTCATA
chr3	105746412	105746413	chr3:105746413:A:G	rs13059405	A	G	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	105867479	105867480	chr3:105867480:A:G	chr3:105867480:A:G	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr3	106023262	106023263	chr3:106023263:G:A	rs75847184	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr3	106030528	106030529	chr3:106030529:G:A	rs12485870	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr3	106088476	106088477	chr3:106088477:C:T	rs6793499	C	T	t	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	106248394	106248395	chr3:106248395:C:A	rs13060369	C	A	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	106283218	106283219	chr3:106283219:A:G	rs77253560	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	106283230	106283231	chr3:106283231:G:C	rs78573149	G	C	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr3	106380799	106380800	chr3:106380800:T:A	rs7609937	T	A	A	Sox3.mouse_HMG_3	14	1	-	3.666733060284426	-2.7152131061424845	GATGTATTAAAGTCATA
chr3	107001486	107001487	chr3:107001487:C:A	rs2203469	C	A	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	107001487	107001488	chr3:107001488:G:A	rs2203470	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	107142778	107142779	chr3:107142779:T:G	rs6798375	T	G	T	Sox3.mouse_HMG_3	11	1	+	3.5998511544679452	2.165415054172138	GCTGCATGCTATTCAGT
chr3	107430563	107430564	chr3:107430564:C:G	rs9824798	C	G	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr3	108018934	108018935	chr3:108018935:C:T	rs551545474	C	T	C	Sox3.mouse_HMG_3	8	1	-	4.480551791719466	3.857435144541652	GAGGAACGGCAGTCATG
chr3	108018959	108018960	chr3:108018960:A:G	rs7639961	A	G	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr3	108208912	108208913	chr3:108208913:C:G	rs1289743	C	G	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr3	108223937	108223938	chr3:108223938:G:A	rs62267926	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr3	108223967	108223968	chr3:108223968:T:G	rs1299076	T	G	T	Sox3.mouse_HMG_3	4	1	-	2.4494099879298696	-4.301131520189515	TGTGACTGTTATACATA
chr3	108488852	108488853	chr3:108488853:C:T	rs566890519	C	T	C	Sox3.mouse_HMG_3	7	1	-	3.16268299606112	-3.390865718596608	TATGAAAGTCACTCAAA
chr3	108589318	108589319	chr3:108589319:G:A	rs35935525	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr3	108729095	108729096	chr3:108729096:A:G	rs12637723	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr3	108729137	108729138	chr3:108729138:A:G	rs62268265	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	108811323	108811324	chr3:108811324:G:T	rs6804727	G	T	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr3	109122950	109122951	chr3:109122951:T:C	rs7636082	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr3	109152249	109152250	chr3:109152250:C:T	rs1606829	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	109382935	109382936	chr3:109382936:C:T	rs4855735	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	109554150	109554151	chr3:109554151:A:G	rs1533853	A	G	A	Sox3.mouse_HMG_3	5	1	+	7.352555942416285	0.8637210203454209	GATGAATAATATTCACA
chr3	109569318	109569319	chr3:109569319:A:G	rs77329263	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr3	109828866	109828867	chr3:109828867:G:A	rs677533	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr3	109929220	109929221	chr3:109929221:C:T	rs3844044	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr3	110181061	110181062	chr3:110181062:C:T	rs116857477	C	T	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr3	110188714	110188715	chr3:110188715:A:G	rs78812085	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.755309267417837	-4.73352565465303	GGAAAATTACAGTCATG
chr3	110382265	110382266	chr3:110382266:G:T	rs1512680	G	T	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr3	110383549	110383550	chr3:110383550:A:G	chr3:110383550:A:G	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr3	110430475	110430476	chr3:110430476:C:T	rs1398422	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	110580030	110580031	chr3:110580031:G:A	rs9855219	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr3	110679380	110679381	chr3:110679381:G:A	rs7637286	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr3	110756987	110756988	chr3:110756988:G:A	rs9857228	G	A	G	Sox3.mouse_HMG_3	1	1	+	1.330123386521809	4.430253322959101	CGTGAATGACATACCTG
chr3	110806725	110806726	chr3:110806726:T:A	rs10511289	T	A	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	110906827	110906828	chr3:110906828:T:G	rs12493974	T	G	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr3	111333211	111333212	chr3:111333212:A:G	rs2971366	A	G	a	Sox3.mouse_HMG_3	0	1	+	2.0906168102674236	2.9159007114137676	AATGAAAGTTGTTCAAA
chr3	111739925	111739926	chr3:111739926:G:A	rs9842396	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	111808397	111808398	chr3:111808398:G:A	rs6783431	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr3	111823548	111823549	chr3:111823549:A:G	rs4555492	A	G	G	Sox3.mouse_HMG_3	6	1	-	2.2784300060943545	-4.329520635446443	GAGGAATGTCATGCAGA
chr3	111828471	111828472	chr3:111828472:G:C	rs8179903	G	C	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	111952946	111952947	chr3:111952947:G:A	rs17492619	G	A	G	Sox3.mouse_HMG_3	0	1	+	6.881760645436721	6.056476744290377	GATGAGTGGCATTCACT
chr3	111970441	111970442	chr3:111970442:T:G	rs11708860	T	G	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr3	112021225	112021226	chr3:112021226:A:G	rs2218326	A	G	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr3	112102050	112102051	chr3:112102051:A:G	rs16859182	A	G	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	112469894	112469895	chr3:112469895:C:T	rs192781704	C	T	C	Sox3.mouse_HMG_3	9	1	+	1.4003470050283862	1.4079836820201321	GTTGAATGCCAGGGATA
chr3	112519494	112519495	chr3:112519495:T:C	rs77253692	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr3	113156012	113156013	chr3:113156013:A:T	rs9810734	A	T	A	Sox3.mouse_HMG_3	16	1	-	2.2530358716912646	3.404024931443761	GATGAATGCTTTTCCAT
chr3	113210983	113210984	chr3:113210984:G:C	rs76538338	G	C	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr3	113387148	113387149	chr3:113387149:T:C	rs116817864	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr3	113395131	113395132	chr3:113395132:A:C	rs78700263	A	C	A	Sox3.mouse_HMG_3	6	1	-	3.4380046187715303	-3.3130468664099393	GATGAATTGCATAGAAG
chr3	113494332	113494333	chr3:113494333:G:C	rs182783287	G	C	G	Sox3.mouse_HMG_3	13	1	-	3.5381418382316	-3.06911877223042	TTTGGATTTCAGTCAGG
chr3	113494335	113494336	chr3:113494336:T:A	rs140580918	T	A	T	Sox3.mouse_HMG_3	10	1	-	3.5381418382316	-3.212909646949872	TTTGGATTTCAGTCAGG
chr3	113494354	113494355	chr3:113494355:T:C	rs67201219	T	C	-	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	113575047	113575048	chr3:113575048:G:T	rs3821682	G	T	G	Sox3.mouse_HMG_3	7	1	+	3.9218760625783267	3.0718431203482552	CATAAATGGTAGTCTTA
chr3	113575967	113575968	chr3:113575968:T:C	rs142866919	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	113830733	113830734	chr3:113830734:T:A	rs191461399	T	A	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr3	113915111	113915112	chr3:113915112:T:C	rs974702	T	C	t	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr3	114356105	114356106	chr3:114356106:T:C	rs74898984	T	C	T	Sox3.mouse_HMG_3	6	1	+	3.0305489159064707	-3.577401725634326	AAGGAATTGCAGTAATG
chr3	114419080	114419081	chr3:114419081:T:C	chr3:114419081:T:C	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr3	114649645	114649646	chr3:114649646:C:T	rs143935683	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr3	114957835	114957836	chr3:114957836:G:A	rs6771110	G	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	115291531	115291532	chr3:115291532:A:G	rs971707	A	G	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr3	115659913	115659914	chr3:115659914:A:G	rs189136952	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr3	115881686	115881687	chr3:115881687:G:A	rs68160605	G	A	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	116066370	116066371	chr3:116066371:A:C	rs55813816	A	C	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr3	116135314	116135315	chr3:116135315:C:T	rs7635196	C	T	C	Sox3.mouse_HMG_3	1	1	-	1.5094694370700896	4.609599373507381	AGTGAATGCCCTTTATA
chr3	116412360	116412361	chr3:116412361:T:G	rs1731596	T	G	G	Sox3.mouse_HMG_3	4	1	-	3.6988670475484318	-3.051674460570953	ACTGAATGTTTTTCAGG
chr3	116561694	116561695	chr3:116561695:G:A	rs1795291	G	A	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr3	116576156	116576157	chr3:116576157:G:A	rs2102847	G	A	G	Sox3.mouse_HMG_3	8	1	-	0.7863292732835085	0.5242095283674026	GAAGAATTCCCTTCACG
chr3	116716804	116716805	chr3:116716805:C:A	rs1133335	C	A	C	Sox3.mouse_HMG_3	16	1	+	1.5263527927413585	3.5442685919661336	AATGAATGCCAGTGTTC
chr3	116716805	116716806	chr3:116716806:G:A	rs80058968	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr3	117582587	117582588	chr3:117582588:C:T	rs12491489	C	T	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	117660692	117660693	chr3:117660693:T:C	rs9877923	T	C	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr3	117706244	117706245	chr3:117706245:T:G	rs955769704	T	G	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr3	117794356	117794357	chr3:117794357:T:A	rs13084363	T	A	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	117936021	117936022	chr3:117936022:T:C	rs62264780	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr3	118018294	118018295	chr3:118018295:C:A	rs73178528	C	A	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr3	118076139	118076140	chr3:118076140:G:A	rs1587450	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr3	118577564	118577565	chr3:118577565:T:C	rs77108305	T	C	T	Sox3.mouse_HMG_3	6	1	+	1.170835075852165	-5.437115565688633	TCTGAATTGACTTCATG
chr3	118802111	118802112	chr3:118802112:T:G	rs798590	T	G	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr3	119207324	119207325	chr3:119207325:C:T	rs16829477	C	T	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr3	119239915	119239916	chr3:119239916:C:T	rs545381113	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr3	119600674	119600675	chr3:119600675:G:A	rs2688637	G	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr3	119671371	119671372	chr3:119671372:G:A	rs6794484	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr3	119671414	119671415	chr3:119671415:G:C	rs6794579	G	C	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	119675320	119675321	chr3:119675321:C:T	rs2293235	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr3	119781816	119781817	chr3:119781817:A:G	rs1523128	A	G	G	Sox3.mouse_HMG_3	10	1	+	2.42769197436842	-4.180258667172377	GATGAAATGCACTCAGA
chr3	119937290	119937291	chr3:119937291:T:C	rs77881395	T	C	T	Sox3.mouse_HMG_3	2	1	-	1.3254239206191045	0.30377267308712197	GCACAATTCCATTCATG
chr3	120116785	120116786	chr3:120116786:C:T	rs112321186	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr3	120327118	120327119	chr3:120327119:T:C	rs11554681	T	C	T	Sox3.mouse_HMG_3	9	1	+	3.9137843548424334	3.9061476778506865	TTTGGATGGTAGTCAGT
chr3	120327125	120327126	chr3:120327126:T:C	rs113457089	T	C	T	Sox3.mouse_HMG_3	16	1	+	3.9137843548424334	3.0468576153701545	TTTGGATGGTAGTCAGT
chr3	120362397	120362398	chr3:120362398:T:G	rs12638445	T	G	T	Sox3.mouse_HMG_3	10	1	-	3.597728957843562	-3.1533225273379086	AAAGAATGAGATTCAGA
chr3	120504037	120504038	chr3:120504038:G:A	rs55912247	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr3	120558596	120558597	chr3:120558597:G:C	rs143311419	G	C	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr3	120675756	120675757	chr3:120675757:T:A	rs2733825	T	A	T	Sox3.mouse_HMG_3	5	1	-	1.755601847451539	-4.851838817027172	TCTGAATCCTATTCCTG
chr3	120691940	120691941	chr3:120691941:C:A	rs143581696	C	A	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr3	120795502	120795503	chr3:120795503:A:G	rs16831698	A	G	-	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr3	120982830	120982831	chr3:120982831:G:A	rs9857987	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr3	121165975	121165976	chr3:121165976:A:C	rs78628617	A	C	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr3	121476058	121476059	chr3:121476059:T:C	rs6784324	T	C	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr3	122256192	122256193	chr3:122256193:G:A	rs991392962	G	A	G	Sox3.mouse_HMG_3	8	1	+	2.5084350990779187	1.8853184519001058	TGTGTATGGCCTTCATA
chr3	122299982	122299983	chr3:122299983:A:G	rs74589404	A	G	A	Sox3.mouse_HMG_3	11	1	-	2.457165789594163	-3.6274450365077824	TATGAATTCCATTGTAG
chr3	122544048	122544049	chr3:122544049:T:A	rs73192112	T	A	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr3	122548698	122548699	chr3:122548699:G:A	rs17267388	G	A	G	Sox3.mouse_HMG_3	6	1	+	2.42769197436842	2.42769197436842	GATGAAGTGCACTCAGA
chr3	122580875	122580876	chr3:122580876:C:T	rs7641610	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr3	122582474	122582475	chr3:122582475:C:T	rs2332238	C	T	C	Sox3.mouse_HMG_3	16	1	-	3.1327086423811448	3.096768185928619	AGAAAATGTCATTCATG
chr3	122921093	122921094	chr3:122921094:T:C	rs13088040	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr3	122947376	122947377	chr3:122947377:A:C	chr3:122947377:A:C	A	C	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr3	123069574	123069575	chr3:123069575:A:G	rs9815443	A	G	G	Sox3.mouse_HMG_3	10	1	+	3.852375231471253	-2.755575410069543	GTTGAATTCTAGTGAGG
chr3	123090267	123090268	chr3:123090268:T:G	rs141131868	T	G	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr3	123149590	123149591	chr3:123149591:A:G	rs2717219	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr3	123304209	123304210	chr3:123304210:G:A	chr3:123304210:G:A	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr3	123359231	123359232	chr3:123359232:G:A	rs2062432	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	123639430	123639431	chr3:123639431:A:C	rs1254403	A	C	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	123683399	123683400	chr3:123683400:T:G	chr3:123683400:T:G	T	G	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr3	123749895	123749896	chr3:123749896:C:T	rs570556581	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr3	124169630	124169631	chr3:124169631:G:T	rs4677919	G	T	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	124263683	124263684	chr3:124263684:A:G	rs76305045	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr3	124373704	124373705	chr3:124373705:C:T	rs9882580	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr3	124374949	124374950	chr3:124374950:G:A	rs12486057	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr3	124565477	124565478	chr3:124565478:T:C	rs2651625	T	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr3	124583510	124583511	chr3:124583511:C:A	rs34455219	C	A	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr3	124587355	124587356	chr3:124587356:G:A	rs13086167	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	124587364	124587365	chr3:124587365:A:G	rs13085691	A	G	a	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr3	124599546	124599547	chr3:124599547:C:T	rs333249	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	124599554	124599555	chr3:124599555:G:A	rs16835642	G	A	A	Sox3.mouse_HMG_3	7	1	+	3.0630563957241987	-3.4904923189335273	GATAACTGTTATTCAGG
chr3	124663876	124663877	chr3:124663877:A:G	rs73193775	A	G	A	Sox3.mouse_HMG_3	14	1	+	4.607623538567035	-1.7743226278598758	CATGCATTGGATTCATG
chr3	124690653	124690654	chr3:124690654:C:T	rs113927031	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr3	124723533	124723534	chr3:124723534:A:T	rs73197605	A	T	A	Sox3.mouse_HMG_3	14	1	+	5.085169181541389	-1.2967769848855217	TAAGAATTTTATTGATA
chr3	124929620	124929621	chr3:124929621:A:G	rs9824790	A	G	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr3	125540401	125540402	chr3:125540402:C:T	rs72979716	C	T	C	Sox3.mouse_HMG_3	14	1	-	1.2265983293985576	7.608544495825468	GTTGACTGATAGTCGTA
chr3	125605098	125605099	chr3:125605099:C:T	rs138897503	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr3	125621506	125621507	chr3:125621507:A:G	rs4572722	A	G	G	Sox3.mouse_HMG_3	5	1	+	4.457376724655978	-2.0314581974148864	GATGAATCACTTTCATT
chr3	125650988	125650989	chr3:125650989:G:C	rs2922168	G	C	G	Sox3.mouse_HMG_3	3	1	+	1.990542801764361	-4.75894793394069	CAGGAAAGACAGTCATG
chr3	125651677	125651678	chr3:125651678:T:C	rs6781860	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr3	125685860	125685861	chr3:125685861:C:A	rs188000085	C	A	.	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr3	125923445	125923446	chr3:125923446:T:C	rs111324805	T	C	.	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	126031578	126031579	chr3:126031579:T:A	rs2333407	T	A	T	Sox3.mouse_HMG_3	4	1	-	3.4420065896438494	-3.1654340748348613	AATAAGTTTTATTCATT
chr3	126049120	126049121	chr3:126049121:C:T	rs13067299	C	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr3	126314366	126314367	chr3:126314367:C:T	rs58214662	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr3	126320341	126320342	chr3:126320342:C:A	rs78151629	C	A	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr3	126320343	126320344	chr3:126320344:C:A	rs9854853	C	A	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr3	126396804	126396805	chr3:126396805:C:A	rs75529867	C	A	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr3	126448931	126448932	chr3:126448932:C:T	rs16837490	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr3	126457176	126457177	chr3:126457177:C:T	chr3:126457177:C:T	C	T	C	Sox3.mouse_HMG_3	11	1	-	1.1658658551218315	-3.4843088706843064	GCTGAATGGCAGACTTG
chr3	126481559	126481560	chr3:126481560:A:C	rs1799398	A	C	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr3	126680315	126680316	chr3:126680316:C:T	rs11714100	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr3	126889754	126889755	chr3:126889755:A:G	rs7633939	A	G	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr3	127134468	127134469	chr3:127134469:G:A	rs78612134	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	127180148	127180149	chr3:127180149:C:T	rs113995892	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	127527475	127527476	chr3:127527476:C:G	rs2720237	C	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr3	127731036	127731037	chr3:127731037:A:G	rs16827188	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	127889247	127889248	chr3:127889248:G:T	rs73205319	G	T	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr3	127955337	127955338	chr3:127955338:G:A	rs116661419	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr3	128260657	128260658	chr3:128260658:T:G	rs2955098	T	G	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr3	129026934	129026935	chr3:129026935:G:A	rs114655660	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr3	129080663	129080664	chr3:129080664:T:C	rs4927929	T	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr3	129308780	129308781	chr3:129308781:C:A	rs141752693	C	A	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr3	129441185	129441186	chr3:129441186:T:A	rs3138326	T	A	T	Sox3.mouse_HMG_3	15	1	-	5.428777605514895	7.692587069751716	GCTGAATGATTTTCAAA
chr3	129553852	129553853	chr3:129553853:G:C	rs61493596	G	C	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr3	129716751	129716752	chr3:129716752:G:A	rs77508678	G	A	G	Sox3.mouse_HMG_3	5	1	+	0.587615981557255	7.0764509036281185	ACTGCGTGCCATTCATG
chr3	129793890	129793891	chr3:129793891:A:G	rs2717240	A	G	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	129822811	129822812	chr3:129822812:T:C	rs11916937	T	C	t	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr3	130104466	130104467	chr3:130104467:G:C	rs2920722	G	C	g	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr3	130231422	130231423	chr3:130231423:A:G	rs2896565	A	G	A	Sox3.mouse_HMG_3	1	1	+	3.9983696369904393	0.8982397005531467	TATAAGTTTTATTCATT
chr3	130408416	130408417	chr3:130408417:G:A	rs139132023	G	A	G	Sox3.mouse_HMG_3	3	1	+	3.6877631390016195	-2.0938017485276115	GGCGAATTCTAGTCAGA
chr3	130408432	130408433	chr3:130408433:G:C	rs149381358	G	C	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr3	130786585	130786586	chr3:130786586:C:T	rs61245148	C	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr3	131880442	131880443	chr3:131880443:T:C	rs6769415	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	132254623	132254624	chr3:132254624:G:A	rs17343307	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr3	132318225	132318226	chr3:132318226:T:G	rs28608063	T	G	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr3	132446210	132446211	chr3:132446211:T:A	rs1979847	T	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr3	132658767	132658768	chr3:132658768:T:C	rs59426843	T	C	C	Sox3.mouse_HMG_3	9	1	+	4.70864959520215	4.701012918210404	TATAAATGCTAGTGATA
chr3	132793104	132793105	chr3:132793105:A:G	rs77320909	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr3	132801363	132801364	chr3:132801364:T:C	rs9823516	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr3	132974743	132974744	chr3:132974744:A:C	rs2369955	A	C	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	133018949	133018950	chr3:133018950:C:A	rs9835183	C	A	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr3	133034382	133034383	chr3:133034383:G:A	rs113891660	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr3	133081590	133081591	chr3:133081591:A:G	rs10512887	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr3	133081629	133081630	chr3:133081630:T:C	rs1521085	T	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr3	133125912	133125913	chr3:133125913:A:G	rs11710705	A	G	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr3	133213067	133213068	chr3:133213068:A:G	rs113520736	A	G	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr3	133213068	133213069	chr3:133213069:A:T	rs79243714	A	T	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr3	133371261	133371262	chr3:133371262:C:T	rs1795101	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr3	133444283	133444284	chr3:133444284:G:A	rs149609294	G	A	G	Sox3.mouse_HMG_3	6	1	-	2.133593847840409	8.741544489381209	CATGAACGGTAGCCATT
chr3	133468292	133468293	chr3:133468293:C:A	rs11928329	C	A	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr3	133718933	133718934	chr3:133718934:A:G	rs4287912	A	G	g	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr3	133836101	133836102	chr3:133836102:G:A	rs76501142	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr3	133839083	133839084	chr3:133839084:C:T	rs74917393	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr3	133879830	133879831	chr3:133879831:G:C	rs1917780	G	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr3	133916146	133916147	chr3:133916147:G:A	rs61465346	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	133965452	133965453	chr3:133965453:T:C	rs28547582	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr3	134144744	134144745	chr3:134144745:A:G	rs10935100	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr3	134194623	134194624	chr3:134194624:C:T	rs78541608	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr3	134253006	134253007	chr3:134253007:A:C	rs145997461	A	C	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr3	134326348	134326349	chr3:134326349:T:C	rs7609766	T	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr3	134590746	134590747	chr3:134590747:T:C	rs4955512	T	C	C	Sox3.mouse_HMG_3	15	1	-	0.7475489837894005	-0.11123236306702	GGTGAAAGGTATGCAAA
chr3	134748845	134748846	chr3:134748846:C:T	rs11711304	C	T	T	Sox3.mouse_HMG_3	4	1	+	0.7781525990515841	0.9212534426922574	GATGCAGGCTAGTCAGG
chr3	135125055	135125056	chr3:135125056:C:G	rs9826352	C	G	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr3	135176817	135176818	chr3:135176818:G:A	rs6799448	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr3	135524028	135524029	chr3:135524029:A:G	rs7622903	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr3	135621768	135621769	chr3:135621769:C:A	rs114527068	C	A	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr3	136024598	136024599	chr3:136024599:A:G	rs6439618	A	G	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr3	136251437	136251438	chr3:136251438:C:T	rs150295687	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr3	136586633	136586634	chr3:136586634:C:G	rs6806123	C	G	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	136938665	136938666	chr3:136938666:C:T	rs965823734	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr3	137451549	137451550	chr3:137451550:C:A	rs67273144	C	A	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr3	137511961	137511962	chr3:137511962:C:T	rs2344794	C	T	C	Sox3.mouse_HMG_3	13	1	+	3.725297900071181	-2.8819627103908383	CTGGAATGATAGTCATC
chr3	137865643	137865644	chr3:137865644:T:A	rs78047929	T	A	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr3	137946289	137946290	chr3:137946290:C:G	rs1373545	C	G	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr3	138338876	138338877	chr3:138338877:G:T	rs4678409	G	T	G	Sox3.mouse_HMG_3	13	1	-	3.455479354614549	-2.927157319362828	CATGGATTCCATGCATA
chr3	138898758	138898759	chr3:138898759:C:A	rs76127040	C	A	C	Sox3.mouse_HMG_3	11	1	-	0.8561081808280788	2.2905442811238856	TGTGAATGACAGTGCTG
chr3	139505720	139505721	chr3:139505721:A:G	rs7644878	A	G	a	Sox3.mouse_HMG_3	15	1	-	3.548895345287802	-1.1654980664272663	AATAAATTTTATTCTTT
chr3	139656044	139656045	chr3:139656045:T:C	chr3:139656045:T:C	T	C	T	Sox3.mouse_HMG_3	14	1	-	5.949050085921375	-0.43289608050553574	GCTGGATTCCAGTCATA
chr3	139710389	139710390	chr3:139710390:A:G	rs62270188	A	G	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr3	140143055	140143056	chr3:140143056:C:G	rs6799784	C	G	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr3	140365946	140365947	chr3:140365947:T:G	rs3943277	T	G	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr3	140378475	140378476	chr3:140378476:A:G	rs13099847	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr3	140442997	140442998	chr3:140442998:A:C	rs11712249	A	C	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	140468549	140468550	chr3:140468550:G:A	rs61110020	G	A	G	Sox3.mouse_HMG_3	6	1	-	2.0048645626117416	8.61281520415254	GATAAACGGTAGTCAAT
chr3	140508575	140508576	chr3:140508576:C:T	rs349502	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr3	140751669	140751670	chr3:140751670:G:T	rs76599798	G	T	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	141383516	141383517	chr3:141383517:C:G	rs150005986	C	G	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	141407888	141407889	chr3:141407889:G:A	rs865828870	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr3	141488255	141488256	chr3:141488256:G:T	chr3:141488256:G:T	G	T	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr3	141650329	141650330	chr3:141650330:C:T	rs4683407	C	T	C	Sox3.mouse_HMG_3	14	1	+	4.833580639302437	4.833580639302437	AATGAATTGCATGCCTG
chr3	142234247	142234248	chr3:142234248:T:A	rs11714119	T	A	A	Sox3.mouse_HMG_3	6	1	+	1.575987099116701	-5.1750643860647685	CAGGAATTCTTTTCATT
chr3	142725290	142725291	chr3:142725291:G:A	rs1403725	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr3	142863796	142863797	chr3:142863797:T:C	rs9871046	T	C	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr3	143038064	143038065	chr3:143038065:A:G	rs11929440	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr3	143232472	143232473	chr3:143232473:A:G	rs7637277	A	G	A	Sox3.mouse_HMG_3	2	1	-	3.4720788668837166	-3.1338002513472123	TATGCAGTGTATTCATT
chr3	143264056	143264057	chr3:143264057:A:G	rs9810857	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	143267595	143267596	chr3:143267596:A:G	rs7653038	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	143332241	143332242	chr3:143332242:G:A	rs373545849	G	A	G	Sox3.mouse_HMG_3	8	1	+	9.98688799065087	9.363771343473056	CATGAATGGTATTCTTT
chr3	143415878	143415879	chr3:143415879:A:G	rs7617737	A	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr3	143601467	143601468	chr3:143601468:A:G	rs56156616	A	G	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr3	143650935	143650936	chr3:143650936:G:A	rs1242073	G	A	A	Sox3.mouse_HMG_3	10	1	+	1.4861714739188596	8.094122115459655	TGTGAATGGTGGTCCTG
chr3	143979911	143979912	chr3:143979912:T:G	rs721572	T	G	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr3	144273724	144273725	chr3:144273725:T:C	rs75058573	T	C	.	Sox3.mouse_HMG_3	6	1	+	3.191975636075995	-3.4159750054648024	CATTAATTGTATTTATG
chr3	144770437	144770438	chr3:144770438:G:C	rs55985534	G	C	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	145153032	145153033	chr3:145153033:A:G	rs751961270	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	145220840	145220841	chr3:145220841:G:A	rs1348658	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr3	145753057	145753058	chr3:145753058:A:G	rs766452471	A	G	A	Sox3.mouse_HMG_3	5	1	+	3.7145329590312137	-2.77430196303965	GATGAATCACATGCAAA
chr3	146026884	146026885	chr3:146026885:T:C	rs1449454	T	C	T	Sox3.mouse_HMG_3	10	1	-	5.82035552388781	-0.7875951176529867	TGTGAGTGCTATTCAGA
chr3	146071908	146071909	chr3:146071909:A:G	rs1375587	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr3	146157261	146157262	chr3:146157262:G:A	rs73148997	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr3	146248793	146248794	chr3:146248794:C:T	rs9838866	C	T	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr3	146250116	146250117	chr3:146250117:A:G	rs10460850	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr3	146539519	146539520	chr3:146539520:G:C	rs1882974	G	C	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr3	146542940	146542941	chr3:146542941:G:C	rs2738911	G	C	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr3	146678218	146678219	chr3:146678219:A:G	rs11718101	A	G	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr3	146778514	146778515	chr3:146778515:G:A	rs16858887	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr3	146783486	146783487	chr3:146783487:A:G	rs28624889	A	G	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr3	146899742	146899743	chr3:146899743:C:A	rs72993849	C	A	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	146899753	146899754	chr3:146899754:C:T	rs75376709	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr3	146928144	146928145	chr3:146928145:A:G	rs73162902	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr3	147653316	147653317	chr3:147653317:G:C	rs2319334	G	C	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr3	147699752	147699753	chr3:147699753:T:C	rs746676330	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr3	148081424	148081425	chr3:148081425:T:C	rs548751840	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr3	148101743	148101744	chr3:148101744:T:A	rs9865208	T	A	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr3	148519969	148519970	chr3:148519970:C:T	rs13434324	C	T	c	Sox3.mouse_HMG_3	9	1	+	3.449916003148415	3.457552680140161	GATGCAGTGCAGTCATA
chr3	148642880	148642881	chr3:148642881:G:A	rs114133926	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr3	148709874	148709875	chr3:148709875:C:A	rs7640374	C	A	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr3	148794559	148794560	chr3:148794560:C:G	rs6807259	C	G	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	148794585	148794586	chr3:148794586:G:A	rs16860938	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	148902973	148902974	chr3:148902974:C:A	rs12496367	C	A	C	Sox3.mouse_HMG_3	9	1	+	3.2049547660664635	-2.849263858441856	TGAGAATTGCAATCATA
chr3	149299557	149299558	chr3:149299558:A:G	rs1813197	A	G	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr3	149472652	149472653	chr3:149472653:G:T	rs971947849	G	T	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr3	149472659	149472660	chr3:149472660:G:A	rs79948101	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr3	149490146	149490147	chr3:149490147:T:C	rs9289788	T	C	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	149490180	149490181	chr3:149490181:T:C	rs9289789	T	C	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr3	149492655	149492656	chr3:149492656:T:C	rs9857970	T	C	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr3	149589869	149589870	chr3:149589870:A:G	rs4681528	A	G	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr3	149815440	149815441	chr3:149815441:G:A	rs12494028	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr3	149881994	149881995	chr3:149881995:C:T	rs9864069	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	150071589	150071590	chr3:150071590:A:G	rs62268859	A	G	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr3	150218425	150218426	chr3:150218426:T:C	rs13323544	T	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr3	150233028	150233029	chr3:150233029:T:A	rs11919219	T	A	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr3	150233879	150233880	chr3:150233880:C:T	rs7649386	C	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	150306087	150306088	chr3:150306088:G:A	rs4681604	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	150538791	150538792	chr3:150538792:C:A	rs6770899	C	A	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr3	150541479	150541480	chr3:150541480:G:A	rs13078968	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr3	150799123	150799124	chr3:150799124:A:G	rs6440698	A	G	a	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	150805526	150805527	chr3:150805527:C:T	rs16862853	C	T	C	Sox3.mouse_HMG_3	7	1	-	5.736715511462079	-0.8168332031956484	GAAGAATGGTAGGCATG
chr3	151016287	151016288	chr3:151016288:T:C	rs187472984	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr3	151021287	151021288	chr3:151021288:A:G	rs3105875	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	151200220	151200221	chr3:151200221:C:T	rs3773616	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	151308335	151308336	chr3:151308336:A:G	rs149632105	A	G	A	Sox3.mouse_HMG_3	16	1	+	3.344009501664643	3.3799499581171686	TAAGAATTTTACTCAAA
chr3	151313197	151313198	chr3:151313198:A:G	rs976812476	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	151367386	151367387	chr3:151367387:G:T	rs1388619	G	T	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr3	151381952	151381953	chr3:151381953:A:G	rs6787801	A	G	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	151384294	151384295	chr3:151384295:T:C	rs3732766	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr3	151698932	151698933	chr3:151698933:T:C	rs74845607	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr3	151778215	151778216	chr3:151778216:C:T	rs16863645	C	T	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr3	151807047	151807048	chr3:151807048:C:G	rs114268364	C	G	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr3	152121635	152121636	chr3:152121636:G:A	rs646635	G	A	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr3	152121637	152121638	chr3:152121638:C:T	rs472976	C	T	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	152186247	152186248	chr3:152186248:T:A	rs10513405	T	A	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr3	152203041	152203042	chr3:152203042:A:G	rs7647028	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr3	152269833	152269834	chr3:152269834:A:G	rs77426051	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr3	152332898	152332899	chr3:152332899:T:C	rs146367172	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr3	152385810	152385811	chr3:152385811:A:G	rs13093929	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr3	152425664	152425665	chr3:152425665:A:G	rs34761467	A	G	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr3	152436659	152436660	chr3:152436660:A:G	rs76176631	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr3	152937340	152937341	chr3:152937341:A:C	rs2043853	A	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr3	152977604	152977605	chr3:152977605:C:A	rs1916280	C	A	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	153068704	153068705	chr3:153068705:G:A	rs554538	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr3	153429822	153429823	chr3:153429823:A:G	rs62276379	A	G	A	Sox3.mouse_HMG_3	8	1	-	2.5500645123575776	2.8121842572736835	AATGAATATTATTCTAG
chr3	153624552	153624553	chr3:153624553:A:T	rs762369763	A	T	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr3	153624567	153624568	chr3:153624568:A:C	rs6799174	A	C	C	Sox3.mouse_HMG_3	5	1	+	4.558920219402124	-2.048520445076587	CATGAATGGCATTTCTG
chr3	153753589	153753590	chr3:153753590:T:A	rs531369	T	A	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	153892280	153892281	chr3:153892281:A:T	rs787955	A	T	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr3	154023084	154023085	chr3:154023085:C:G	rs6785896	C	G	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	154023154	154023155	chr3:154023155:A:G	rs6809873	A	G	A	Sox3.mouse_HMG_3	14	1	-	3.991734850959568	3.991734850959568	AATGTATTATATTCTTG
chr3	154367210	154367211	chr3:154367211:T:C	rs187778160	T	C	T	Sox3.mouse_HMG_3	11	1	+	3.231819735885037	-2.8527910902169076	GATGAATAATATTGAAG
chr3	155498030	155498031	chr3:155498031:A:G	rs3942389	A	G	G	Sox3.mouse_HMG_3	11	1	-	3.7121190871192242	-2.3724917389827205	TAAGAATGGCATACAAT
chr3	155747946	155747947	chr3:155747947:C:T	rs755940918	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr3	155946254	155946255	chr3:155946255:A:G	rs12493963	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr3	156075109	156075110	chr3:156075110:T:C	rs140856528	T	C	C	Sox3.mouse_HMG_3	6	1	+	3.238848297653715	-3.3691023438870813	TTAAAATTCTATTCATG
chr3	156561140	156561141	chr3:156561141:A:G	rs6808173	A	G	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	157129098	157129099	chr3:157129099:C:T	rs78452574	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr3	157154286	157154287	chr3:157154287:G:A	rs12492801	G	A	G	Sox3.mouse_HMG_3	13	1	-	1.2880413556140045	-5.319219254848016	GGTAAATTTCAGACATG
chr3	157231412	157231413	chr3:157231413:C:T	rs62276504	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr3	157381801	157381802	chr3:157381802:A:G	rs9871290	A	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr3	157381848	157381849	chr3:157381849:G:A	rs13087207	G	A	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	157472206	157472207	chr3:157472207:A:G	rs67118252	A	G	A	Sox3.mouse_HMG_3	5	1	-	8.817429231427255	8.817429231427255	GATGATTTTTATTCAAA
chr3	157532965	157532966	chr3:157532966:A:G	rs11708768	A	G	a	Sox3.mouse_HMG_3	9	1	-	6.63898501933924	6.631348342347493	AATGAATTATGGTCAAA
chr3	157668132	157668133	chr3:157668133:G:A	rs73873917	G	A	G	Sox3.mouse_HMG_3	2	1	+	1.6000280988374516	2.6216793463694326	AAGGAGTTTCATTCATC
chr3	157832711	157832712	chr3:157832712:G:A	rs76733055	G	A	G	Sox3.mouse_HMG_3	10	1	+	2.659154075971662	9.26710471751246	TAAGAATTGCGTTCAGA
chr3	158388041	158388042	chr3:158388042:T:C	rs7641036	T	C	T	Sox3.mouse_HMG_3	14	1	-	2.7473776746220535	-3.634568491804857	TATTAATTTCATTTATT
chr3	158421348	158421349	chr3:158421349:G:T	rs76335475	G	T	G	Sox3.mouse_HMG_3	8	1	-	4.469404169784417	4.289070191284535	AATGACTTCTAATCATG
chr3	158626043	158626044	chr3:158626044:C:T	rs1845139	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr3	158661611	158661612	chr3:158661612:C:T	rs9872962	C	T	C	Sox3.mouse_HMG_3	10	1	+	2.0877308094292615	2.0877308094292615	TTTGAATTCCCTTCACT
chr3	158811327	158811328	chr3:158811328:G:A	rs12493280	G	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr3	159117163	159117164	chr3:159117164:A:G	rs4679854	A	G	A	Sox3.mouse_HMG_3	15	1	-	5.253472441664282	0.5390790299492143	GATTAGTGACATTCATG
chr3	159134671	159134672	chr3:159134672:G:C	rs10513536	G	C	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr3	159310898	159310899	chr3:159310899:C:T	rs2595253	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr3	159429919	159429920	chr3:159429920:A:G	rs75752598	A	G	A	Sox3.mouse_HMG_3	5	1	-	4.474223223911502	4.474223223911502	AATCATTGATATTCATG
chr3	160183781	160183782	chr3:160183782:A:G	rs185568306	A	G	A	Sox3.mouse_HMG_3	2	1	-	5.374546677626658	-1.231332440604272	TGTGAATTCTACTCAGA
chr3	160434287	160434288	chr3:160434288:T:C	rs3773371	T	C	T	Sox3.mouse_HMG_3	9	1	+	5.318928504598059	5.311291827606313	TCTGAATTATAGTGATG
chr3	160477940	160477941	chr3:160477941:T:C	rs13314803	T	C	t	Sox3.mouse_HMG_3	2	1	+	1.728256835453635	-4.8776222827772955	CCTGAATGCCAGTGAGA
chr3	160561622	160561623	chr3:160561623:G:A	rs4679894	G	A	G	Sox3.mouse_HMG_3	13	1	-	8.817584009002292	2.210323398540272	GTTGAAAGTTATTCATA
chr3	160641892	160641893	chr3:160641893:G:C	rs76877180	G	C	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr3	160641922	160641923	chr3:160641923:A:G	rs4635753	A	G	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	160707644	160707645	chr3:160707645:G:T	rs13092981	G	T	G	Sox3.mouse_HMG_3	13	1	-	2.1576299938041394	-4.225006680173237	TCTGAATGCTACACATA
chr3	161031473	161031474	chr3:161031474:C:T	rs16831792	C	T	c	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr3	161551729	161551730	chr3:161551730:T:C	rs6797876	T	C	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr3	161793588	161793589	chr3:161793589:T:A	rs36024447	T	A	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	162166218	162166219	chr3:162166219:C:A	chr3:162166219:C:A	C	A	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr3	162218669	162218670	chr3:162218670:G:T	rs34819866	G	T	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr3	162218671	162218672	chr3:162218672:T:G	rs12636428	T	G	T	Sox3.mouse_HMG_3	15	1	-	1.473330323994259	-0.9772536234839881	TATGAACTGTAGGCAAG
chr3	162482437	162482438	chr3:162482438:G:A	rs62293961	G	A	g	Sox3.mouse_HMG_3	2	1	+	1.8443099072519136	2.8659611547838946	AAGGAATTGCAGTCCTT
chr3	162763619	162763620	chr3:162763620:C:T	rs67493666	C	T	C	Sox3.mouse_HMG_3	11	1	-	4.33990781457269	-0.31026691123344796	TATGAATGTTAGAAATA
chr3	162777359	162777360	chr3:162777360:A:G	rs206894	A	G	g	Sox3.mouse_HMG_3	5	1	+	5.998459252670409	-0.49037566940045596	GATAAATGTCTTTCATA
chr3	162863866	162863867	chr3:162863867:A:G	rs9759127	A	G	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	163030563	163030564	chr3:163030564:C:G	rs4260465	C	G	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr3	163140946	163140947	chr3:163140947:C:A	rs34784505	C	A	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	163315764	163315765	chr3:163315765:C:A	rs60914031	C	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	163523328	163523329	chr3:163523329:C:T	rs34183566	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr3	163780062	163780063	chr3:163780063:A:G	rs34065866	A	G	A	Sox3.mouse_HMG_3	5	1	+	3.4283687377846768	-3.060466184286187	AATTAATGAAAGTCATG
chr3	163919605	163919606	chr3:163919606:T:A	rs3889963	T	A	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr3	164024751	164024752	chr3:164024752:C:G	rs11919394	C	G	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr3	164278072	164278073	chr3:164278073:G:A	rs77318161	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr3	164423903	164423904	chr3:164423904:G:C	rs7340644	G	C	g	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr3	164521896	164521897	chr3:164521897:T:C	rs6771842	T	C	C	Sox3.mouse_HMG_3	4	1	-	1.7289514844027873	-4.653865243591281	ATTGAATGATCTGCATG
chr3	165464691	165464692	chr3:165464692:A:G	rs62293358	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr3	165836432	165836433	chr3:165836433:A:G	rs4599347	A	G	A	Sox3.mouse_HMG_3	14	1	+	9.29562214224092	2.9136759758140096	CATGAAATATATTCATA
chr3	167106157	167106158	chr3:167106158:G:C	rs953316	G	C	G	Sox3.mouse_HMG_3	16	1	+	6.825719196243639	4.771862940566338	TTTGAATGGCACTCAGG
chr3	167651340	167651341	chr3:167651341:A:G	rs2420024	A	G	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr3	167668324	167668325	chr3:167668325:G:A	rs7356092	G	A	G	Sox3.mouse_HMG_3	13	1	-	3.4155531461008124	-3.1917074643612082	AATGAACACTAGTCATG
chr3	167750154	167750155	chr3:167750155:C:T	rs7631183	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	167773111	167773112	chr3:167773112:A:G	rs6775296	A	G	a	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr3	167862645	167862646	chr3:167862646:A:C	rs7618769	A	C	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr3	167862672	167862673	chr3:167862673:C:A	rs7651786	C	A	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr3	168021983	168021984	chr3:168021984:C:T	rs73174976	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr3	168044347	168044348	chr3:168044348:G:C	rs9810182	G	C	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr3	168071755	168071756	chr3:168071756:T:C	rs55854640	T	C	t	Sox3.mouse_HMG_3	14	1	-	2.0241855457694484	-4.357760620657463	CATGAATTACCTACATT
chr3	168081741	168081742	chr3:168081742:T:A	rs115930440	T	A	t	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr3	168091840	168091841	chr3:168091841:A:C	rs67748432	A	C	a	Sox3.mouse_HMG_3	0	1	+	2.7164337600580115	1.8179261620677367	ACTGAATTACAGTCTAG
chr3	168230577	168230578	chr3:168230578:G:A	rs9836029	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr3	168323058	168323059	chr3:168323059:G:T	rs71304676	G	T	g	Sox3.mouse_HMG_3	8	1	+	4.018902254301921	3.313999840707883	GATGAATGGCATTTCAG
chr3	168472933	168472934	chr3:168472934:G:T	rs329076	G	T	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr3	168484655	168484656	chr3:168484656:A:T	rs186635	A	T	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr3	169021529	169021530	chr3:169021530:A:G	rs377189214	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr3	169128912	169128913	chr3:169128913:C:T	rs12491785	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr3	169144942	169144943	chr3:169144943:T:A	rs16853245	T	A	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr3	169144971	169144972	chr3:169144972:T:G	rs73167967	T	G	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr3	169166035	169166036	chr3:169166036:C:T	rs6805301	C	T	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr3	169316190	169316191	chr3:169316191:T:C	rs149910962	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	169420641	169420642	chr3:169420642:C:A	rs6766070	C	A	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	169420650	169420651	chr3:169420651:C:A	rs6766149	C	A	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr3	169696253	169696254	chr3:169696254:T:A	rs10460793	T	A	T	Sox3.mouse_HMG_3	1	1	-	0.8984857938490693	-2.071591014340026	TATGAATGGGATTAGTG
chr3	169772148	169772149	chr3:169772149:C:T	rs35100673	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr3	169772157	169772158	chr3:169772158:A:G	rs3821383	A	G	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr3	169941593	169941594	chr3:169941594:T:A	rs960354	T	A	c	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr3	170323676	170323677	chr3:170323677:C:T	rs113008638	C	T	c	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr3	170467040	170467041	chr3:170467041:C:A	rs375072818	C	A	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr3	170599014	170599015	chr3:170599015:T:C	rs186169046	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr3	170629524	170629525	chr3:170629525:G:A	rs4955742	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr3	171116265	171116266	chr3:171116266:A:G	rs71306692	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr3	171190972	171190973	chr3:171190973:G:A	rs12495729	G	A	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	171234533	171234534	chr3:171234534:C:T	rs905129	C	T	T	Sox3.mouse_HMG_3	9	1	+	2.198923974638899	2.206560651630645	AATGGATTGCTTTCAAG
chr3	171307458	171307459	chr3:171307459:T:C	rs6799025	T	C	C	Sox3.mouse_HMG_3	15	1	+	3.0292961982057847	-1.6850972135092834	TATGCATTCTCTTCATT
chr3	171704110	171704111	chr3:171704111:T:C	rs9850783	T	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr3	171802039	171802040	chr3:171802040:C:T	rs112496157	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	172013896	172013897	chr3:172013897:G:A	rs73037136	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr3	172050283	172050284	chr3:172050284:A:G	rs9290439	A	G	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr3	172074719	172074720	chr3:172074720:C:G	rs916031184	C	G	C	Sox3.mouse_HMG_3	11	1	-	2.28350965086845	-2.3666650749376883	CATGACTGATAGTTATG
chr3	172082206	172082207	chr3:172082207:T:A	rs4894801	T	A	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr3	172103030	172103031	chr3:172103031:C:T	rs113335429	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr3	172201766	172201767	chr3:172201767:T:G	rs1031822885	T	G	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr3	172257475	172257476	chr3:172257476:A:G	rs34673120	A	G	a	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr3	172270897	172270898	chr3:172270898:T:C	rs73029379	T	C	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr3	172270916	172270917	chr3:172270917:T:C	rs77351096	T	C	T	Sox3.mouse_HMG_3	15	1	+	6.3188852527013095	1.6044918409862414	CTTGAATGCCAGTCTTG
chr3	172298396	172298397	chr3:172298397:C:A	chr3:172298397:C:A	C	A	C	Sox3.mouse_HMG_3	3	1	+	3.180758900206528	4.148684748382347	GATCATTTTTATTCATT
chr3	172520592	172520593	chr3:172520593:G:A	rs77571567	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr3	172520629	172520630	chr3:172520630:T:G	rs231982	T	G	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr3	172520630	172520631	chr3:172520631:C:A	rs3774316	C	A	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr3	172600234	172600235	chr3:172600235:T:A	rs6783761	T	A	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr3	172652293	172652294	chr3:172652294:G:A	rs9816419	G	A	g	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr3	172660640	172660641	chr3:172660641:T:G	rs186123361	T	G	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr3	172857329	172857330	chr3:172857330:A:G	rs141070580	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	172857521	172857522	chr3:172857522:C:T	rs150268941	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr3	172894738	172894739	chr3:172894739:C:A	rs2861040	C	A	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr3	173061856	173061857	chr3:173061857:T:C	rs7631047	T	C	C	Sox3.mouse_HMG_3	15	1	+	12.043136412219386	7.328743000504319	GAAGAATTATATTCATA
chr3	173065880	173065881	chr3:173065881:C:T	rs6784377	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr3	173065929	173065930	chr3:173065930:G:A	rs1399750	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr3	173066308	173066309	chr3:173066309:T:G	rs6800002	T	G	T	Sox3.mouse_HMG_3	1	1	-	2.0663777462457826	-2.1104817676101124	GATGATGTTTATTCAAA
chr3	173135215	173135216	chr3:173135216:T:C	rs6770106	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr3	173512280	173512281	chr3:173512281:A:T	rs1608395	A	T	T	Sox3.mouse_HMG_3	10	1	+	2.3538981763697437	-4.397153308811727	CTTGAATTCTAGTCTGG
chr3	173617352	173617353	chr3:173617353:T:A	rs77592068	T	A	T	Sox3.mouse_HMG_3	14	1	-	2.711709786862667	-3.670236379564244	TGTGAATGCTATAGATA
chr3	173814732	173814733	chr3:173814733:T:G	rs9868337	T	G	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr3	173863761	173863762	chr3:173863762:C:T	rs114638669	C	T	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr3	174160075	174160076	chr3:174160076:A:G	rs73046288	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr3	174330138	174330139	chr3:174330139:C:G	rs5015152	C	G	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr3	174330185	174330186	chr3:174330186:G:A	rs115241900	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr3	174330187	174330188	chr3:174330188:G:A	rs5015151	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr3	174346775	174346776	chr3:174346776:A:G	rs1520157	A	G	A	Sox3.mouse_HMG_3	8	1	+	2.3649096060874593	2.9880262532652724	GATGAATGATTTTCTGA
chr3	174396096	174396097	chr3:174396097:C:T	rs9873150	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr3	174399675	174399676	chr3:174399676:G:C	rs9862192	G	C	G	Sox3.mouse_HMG_3	14	1	+	1.5376974768304	1.5376974768304	TCTTAATGGCATTCGTG
chr3	174776482	174776483	chr3:174776483:A:G	rs146065168	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr3	174865380	174865381	chr3:174865381:G:T	rs11922249	G	T	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr3	175120582	175120583	chr3:175120583:C:T	rs9866306	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr3	175199209	175199210	chr3:175199210:C:A	rs9883893	C	A	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr3	175267670	175267671	chr3:175267671:C:T	rs113476271	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr3	175267672	175267673	chr3:175267673:T:G	rs62285941	T	G	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr3	175267720	175267721	chr3:175267721:C:T	rs56273725	C	T	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr3	175521843	175521844	chr3:175521844:T:C	rs145502001	T	C	T	Sox3.mouse_HMG_3	12	1	+	2.1311597872975314	-4.0616937801032345	AATGAATGTCAGTTGTT
chr3	175586130	175586131	chr3:175586131:C:T	rs73171406	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	175601357	175601358	chr3:175601358:T:C	rs11710630	T	C	C	Sox3.mouse_HMG_3	0	1	-	1.8440973025124054	2.6693812036587485	AGTGAAATGCATTCACT
chr3	176469071	176469072	chr3:176469072:C:A	rs4857614	C	A	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr3	176976777	176976778	chr3:176976778:A:G	rs41333946	A	G	A	Sox3.mouse_HMG_3	2	1	-	4.622271143129048	-1.9836079751018811	GATGAATGGCGGTGATG
chr3	177150264	177150265	chr3:177150265:T:C	rs7632766	T	C	T	Sox3.mouse_HMG_3	1	1	+	6.471405036975556	5.264622331308756	ATGGAATGGTATTCAAG
chr3	177195463	177195464	chr3:177195464:T:C	rs147485973	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr3	177370367	177370368	chr3:177370368:C:G	rs6443452	C	G	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr3	177447007	177447008	chr3:177447008:C:T	rs73173164	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr3	177468634	177468635	chr3:177468635:C:A	rs150704602	C	A	C	Sox3.mouse_HMG_3	3	1	-	2.0506656678852213	-4.855828816629493	TATGCAAGGCATTCAAT
chr3	177485196	177485197	chr3:177485197:T:C	rs2173622	T	C	T	Sox3.mouse_HMG_3	2	1	+	3.717173100529918	-2.888706017701014	CATGAATGTTCTTAATG
chr3	177522152	177522153	chr3:177522153:G:C	chr3:177522153:G:C	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	177625075	177625076	chr3:177625076:A:G	rs4989456	A	G	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr3	177653097	177653098	chr3:177653098:T:C	rs7637077	T	C	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr3	177713131	177713132	chr3:177713132:C:T	rs67889675	C	T	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	177830710	177830711	chr3:177830711:A:G	rs75596517	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	177832843	177832844	chr3:177832844:C:T	chr3:177832844:C:T	C	T	C	Sox3.mouse_HMG_3	10	1	-	0.11810762804827113	6.726058269589069	TGTGAATGGAGTTCAGG
chr3	177835255	177835256	chr3:177835256:G:A	rs77175887	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr3	178004140	178004141	chr3:178004141:A:T	rs56965193	A	T	T	Sox3.mouse_HMG_3	10	1	-	1.9657155613360013	8.716767046517472	TGTGAGTGTTTTTCATG
chr3	178387552	178387553	chr3:178387553:G:T	rs282875	G	T	T	Sox3.mouse_HMG_3	13	1	-	3.2692989388372293	-3.1133377351401466	AAAGAATGCTTTTCAAG
chr3	178568475	178568476	chr3:178568476:A:G	rs16829780	A	G	A	Sox3.mouse_HMG_3	16	1	+	3.24614227287354	3.2820827293260657	CATAAATGCCAGTGATA
chr3	178790485	178790486	chr3:178790486:T:C	rs567729554	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	179421691	179421692	chr3:179421692:C:G	rs190739105	C	G	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr3	179451715	179451716	chr3:179451716:C:T	rs116880111	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr3	179614005	179614006	chr3:179614006:A:G	rs183664286	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	179752206	179752207	chr3:179752207:A:G	rs2239639	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr3	179889397	179889398	chr3:179889398:G:C	rs3774247	G	C	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr3	180527944	180527945	chr3:180527945:A:C	rs77466428	A	C	C	Sox3.mouse_HMG_3	5	1	+	1.9099890043077228	-4.697451660170988	CCTGAATTGAAGTCAGG
chr3	180678711	180678712	chr3:180678712:G:A	rs13083968	G	A	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr3	181399685	181399686	chr3:181399686:G:A	rs6804481	G	A	A	Sox3.mouse_HMG_3	9	1	-	3.105515143956519	3.113151820948265	TATGAACTACAGTCTTG
chr3	181706626	181706627	chr3:181706627:C:G	rs12497248	C	G	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr3	181736203	181736204	chr3:181736204:C:A	rs80105037	C	A	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr3	182766408	182766409	chr3:182766409:G:A	rs2717280	G	A	A	Sox3.mouse_HMG_3	16	1	+	5.865044384966685	5.82910392851416	TGTGAGTTCTATTCAAG
chr3	182936765	182936766	chr3:182936766:C:A	rs6443837	C	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr3	183506976	183506977	chr3:183506977:T:C	rs79762338	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr3	183765642	183765643	chr3:183765643:C:A	rs115788651	C	A	C	Sox3.mouse_HMG_3	13	1	+	1.0760879312808014	-5.306548742696576	GCTGAAGTGCATTCCTA
chr3	183816698	183816699	chr3:183816699:G:C	rs2606225	G	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr3	183816705	183816706	chr3:183816706:G:T	rs2606226	G	T	G	Sox3.mouse_HMG_3	1	1	+	1.7240266339917207	1.8540797622399179	GGTAAATGTGAGTCATT
chr3	183827493	183827494	chr3:183827494:A:G	rs7349550	A	G	G	Sox3.mouse_HMG_3	14	1	+	3.527291025208876	-2.8546551412180348	AAGGAATGACAGACATG
chr3	183844487	183844488	chr3:183844488:A:C	rs3811725	A	C	A	Sox3.mouse_HMG_3	13	1	+	2.6139909791994773	8.996627653176855	AATGAATGCTTTTAAAG
chr3	183941674	183941675	chr3:183941675:A:T	rs6804242	A	T	T	Sox3.mouse_HMG_3	7	1	-	3.8395384530888315	-1.863977319338824	CCTGAATTGCATTCCAA
chr3	184345909	184345910	chr3:184345910:G:A	rs571039551	G	A	g	Sox3.mouse_HMG_3	5	1	+	6.8001169882995525	13.288951910370418	AGTGAGTGACAGTCATG
chr3	184402934	184402935	chr3:184402935:A:G	rs7611080	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	184449794	184449795	chr3:184449795:C:T	rs12496289	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr3	184538799	184538800	chr3:184538800:G:C	rs76777348	G	C	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr3	184540415	184540416	chr3:184540416:C:T	rs6793329	C	T	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr3	185024671	185024672	chr3:185024672:A:G	rs73885641	A	G	A	Sox3.mouse_HMG_3	8	1	+	4.0549232354552505	4.678039882633063	GGTGAAAGATATTCACA
chr3	185042525	185042526	chr3:185042526:G:A	rs80288863	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	185046642	185046643	chr3:185046643:C:T	rs62289505	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr3	185120244	185120245	chr3:185120245:T:A	rs149191260	T	A	T	Sox3.mouse_HMG_3	0	1	-	2.2268045035667177	2.7831675509133076	AATGAATAATTTTCAAA
chr3	185120306	185120307	chr3:185120307:A:C	rs73190986	A	C	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr3	185120320	185120321	chr3:185120321:G:A	rs73887815	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr3	185729525	185729526	chr3:185729526:G:A	rs78095050	G	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	185915620	185915621	chr3:185915621:T:C	rs16860324	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr3	186470820	186470821	chr3:186470821:G:T	rs9290833	G	T	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr3	186495994	186495995	chr3:186495995:A:G	rs11918665	A	G	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr3	186517346	186517347	chr3:186517347:A:C	rs1530642	A	C	A	Sox3.mouse_HMG_3	5	1	+	0.9753116444697674	-5.632129020008943	AATGAATTGCTGTCTTC
chr3	186743368	186743369	chr3:186743369:T:C	rs5030094	T	C	T	Sox3.mouse_HMG_3	5	1	-	2.653979129697209	-3.8348557923736557	AATCAATGGTCTTCAAA
chr3	186743391	186743392	chr3:186743392:T:C	rs2062632	T	C	t	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr3	186757658	186757659	chr3:186757659:T:C	rs61605278	T	C	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr3	186787916	186787917	chr3:186787917:A:C	rs12630327	A	C	.	Sox3.mouse_HMG_3	6	1	-	7.253908497172244	0.5028570119907724	TATGAATTTTTTTCAAT
chr3	186827054	186827055	chr3:186827055:C:T	rs528651826	C	T	C	Sox3.mouse_HMG_3	9	1	+	3.1470788000558225	3.1547154770475685	GTTGGATGACAGTCACG
chr3	186938791	186938792	chr3:186938792:A:G	rs141105270	A	G	A	Sox3.mouse_HMG_3	2	1	-	1.2834386535283644	-5.322440464702567	CATGCGTTTCAGTCATA
chr3	186938812	186938813	chr3:186938813:G:C	rs3864106	G	C	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	187031655	187031656	chr3:187031656:G:A	rs4012164	G	A	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr3	187031663	187031664	chr3:187031664:A:G	rs28412033	A	G	A	Sox3.mouse_HMG_3	12	1	-	1.1672588963689992	-5.025594671031768	GATGACTTGAAGTCAGA
chr3	187041141	187041142	chr3:187041142:G:C	rs9847687	G	C	C	Sox3.mouse_HMG_3	4	1	-	1.6893415961717535	2.05706637629707	AGAGCATGGTATTCATT
chr3	187183210	187183211	chr3:187183211:A:G	rs12491229	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr3	187255125	187255126	chr3:187255126:A:G	rs75314492	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr3	187407731	187407732	chr3:187407732:T:C	rs2653333	T	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr3	187748053	187748054	chr3:187748054:G:T	rs60757451	G	T	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr3	187748102	187748103	chr3:187748103:C:G	chr3:187748103:C:G	C	G	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr3	187779545	187779546	chr3:187779546:C:G	rs6444253	C	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr3	188136883	188136884	chr3:188136884:A:G	rs12488886	A	G	A	Sox3.mouse_HMG_3	5	1	+	4.35932655805148	-2.129508364019384	TATGTATTCTCTTCATG
chr3	188192777	188192778	chr3:188192778:T:A	rs34277939	T	A	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr3	188202588	188202589	chr3:188202589:A:G	rs141698035	A	G	A	Sox3.mouse_HMG_3	15	1	-	3.630008075655949	-1.0843853360591194	GATCAACTGCAGTCATG
chr3	188267911	188267912	chr3:188267912:C:G	rs1871520	C	G	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr3	188286086	188286087	chr3:188286087:T:C	rs77972081	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	188482708	188482709	chr3:188482709:T:A	rs74941116	T	A	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr3	188562639	188562640	chr3:188562640:G:A	rs13093461	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr3	188635974	188635975	chr3:188635975:G:T	rs16863480	G	T	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr3	188683859	188683860	chr3:188683860:C:G	rs62290011	C	G	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr3	188911560	188911561	chr3:188911561:G:C	rs188496785	G	C	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr3	188915139	188915140	chr3:188915140:T:G	rs143127091	T	G	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr3	189167410	189167411	chr3:189167411:G:A	rs74902382	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr3	189428805	189428806	chr3:189428806:G:A	rs17425644	G	A	G	Sox3.mouse_HMG_3	13	1	-	6.9237229558081035	0.316462345346084	TTTGAATTCCAGTCCTG
chr3	189455882	189455883	chr3:189455883:C:T	rs6791867	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr3	189562847	189562848	chr3:189562848:G:A	rs9859170	G	A	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr3	189664738	189664739	chr3:189664739:A:G	rs376144247	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr3	189673802	189673803	chr3:189673803:T:G	rs13085052	T	G	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr3	189711307	189711308	chr3:189711308:A:G	rs116808946	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	189820407	189820408	chr3:189820408:T:G	rs73199730	T	G	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr3	189898965	189898966	chr3:189898966:T:C	rs73892217	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	189898972	189898973	chr3:189898973:C:G	rs9867709	C	G	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	189945437	189945438	chr3:189945438:A:G	rs12629982	A	G	A	Sox3.mouse_HMG_3	14	1	+	1.9965352572937372	-4.385410909133173	TGTGACTTTCAGTCAGT
chr3	189945595	189945596	chr3:189945596:T:G	rs4687112	T	G	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr3	189961460	189961461	chr3:189961461:G:A	rs16864907	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	189977079	189977080	chr3:189977080:C:T	rs56153306	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr3	190038124	190038125	chr3:190038125:T:C	rs1666391	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr3	190370441	190370442	chr3:190370442:A:G	rs62278670	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr3	190385013	190385014	chr3:190385014:C:A	rs17444719	C	A	C	Sox3.mouse_HMG_3	15	1	-	1.6959488163996645	4.818539627492906	AAAGAACTCCATTCAGG
chr3	190447050	190447051	chr3:190447051:C:G	rs78113860	C	G	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr3	190553600	190553601	chr3:190553601:C:G	rs2080795	C	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr3	190566494	190566495	chr3:190566495:G:A	rs1040036762	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	190580964	190580965	chr3:190580965:C:T	rs6444434	C	T	T	Sox3.mouse_HMG_3	15	1	-	2.5010982026983974	3.359879549554818	TATGATTGACATACAGA
chr3	190716363	190716364	chr3:190716364:A:C	rs7652924	A	C	C	Sox3.mouse_HMG_3	4	1	+	3.943352388993496	-2.807189119125888	CATGAAAGCTATTAATA
chr3	190720334	190720335	chr3:190720335:T:C	rs147591885	T	C	T	Sox3.mouse_HMG_3	6	1	+	1.1305548311236306	-5.477395810417168	TTTGAATGCCAGTTTTA
chr3	191136501	191136502	chr3:191136502:G:T	rs6788488	G	T	G	Sox3.mouse_HMG_3	13	1	-	4.1207520126581585	-2.2618846613192174	TTTTAATTTCATTCAAT
chr3	191350295	191350296	chr3:191350296:A:G	rs76001579	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr3	191369357	191369358	chr3:191369358:C:T	rs4677725	C	T	T	Sox3.mouse_HMG_3	1	1	+	4.769673126274238	5.976455831941037	ACGGAATGTTATTCATC
chr3	191369687	191369688	chr3:191369688:G:A	rs4677727	G	A	A	Sox3.mouse_HMG_3	16	1	+	2.384113367262551	2.3481729108100255	TTTGAATGTCTTCCATG
chr3	191369703	191369704	chr3:191369704:A:G	rs16848983	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr3	191961677	191961678	chr3:191961678:C:G	rs13101138	C	G	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr3	191961683	191961684	chr3:191961684:G:T	rs3863984	G	T	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr3	192039008	192039009	chr3:192039009:C:T	rs566843657	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr3	192888429	192888430	chr3:192888430:C:T	rs116497731	C	T	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr3	193050131	193050132	chr3:193050132:A:C	rs9870131	A	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr3	193259106	193259107	chr3:193259107:T:C	rs10460912	T	C	T	Sox3.mouse_HMG_3	14	1	-	2.695603856134904	-3.686342310292007	GGTGAATCATATTTATG
chr3	193400490	193400491	chr3:193400491:G:A	rs3732525	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr3	193894780	193894781	chr3:193894781:C:T	rs79744420	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr3	194016416	194016417	chr3:194016417:A:G	rs4632490	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr3	194069985	194069986	chr3:194069986:C:T	rs12487368	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr3	194070005	194070006	chr3:194070006:A:G	rs58633572	A	G	A	Sox3.mouse_HMG_3	6	1	-	4.565979418205735	-2.041971223335062	GCTGAATGTTATGCAAT
chr3	194073199	194073200	chr3:194073200:T:A	rs4687508	T	A	T	Sox3.mouse_HMG_3	15	1	-	4.509082120141784	6.7728915843786055	AGTGAATGCTAATCAAC
chr3	194111792	194111793	chr3:194111793:C:T	rs9829944	C	T	c	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr3	194287581	194287582	chr3:194287582:T:G	rs77965493	T	G	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr3	194472098	194472099	chr3:194472099:G:C	rs61437873	G	C	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr3	194708783	194708784	chr3:194708784:T:C	rs76028542	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	194825059	194825060	chr3:194825060:G:A	rs7632234	G	A	G	Sox3.mouse_HMG_3	16	1	+	1.006556357631681	0.9706159011791553	GTTGGATTCTAGCCATG
chr3	194830338	194830339	chr3:194830339:T:C	rs4677757	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr3	194847170	194847171	chr3:194847171:A:G	rs56823724	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.742652047295818	-4.746182874775046	GTTGAATGATGGTCACT
chr3	194906452	194906453	chr3:194906453:A:T	rs74448326	A	T	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	194984425	194984426	chr3:194984426:A:G	rs2676846	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr3	194989177	194989178	chr3:194989178:T:G	rs2676853	T	G	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	195003538	195003539	chr3:195003539:C:T	rs56174451	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr3	195028855	195028856	chr3:195028856:G:T	rs2720934	G	T	T	Sox3.mouse_HMG_3	0	1	-	2.1565461558197656	3.05505375381004	CAAGAATTGCAGCCATT
chr3	195041512	195041513	chr3:195041513:C:T	rs146263692	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	195063208	195063209	chr3:195063209:C:A	rs34762962	C	A	C	Sox3.mouse_HMG_3	9	1	+	0.8555850214047971	-5.198633603103522	GATGAGTGGCCTTCAGC
chr3	195098241	195098242	chr3:195098242:T:A	rs56371459	T	A	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr3	195119423	195119424	chr3:195119424:C:T	rs150294037	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr3	195149075	195149076	chr3:195149076:A:G	rs7652491	A	G	A	Sox3.mouse_HMG_3	16	1	+	2.771434937414859	2.8073753938673844	GTTGAAAGGTTTTCATA
chr3	195195584	195195585	chr3:195195585:G:A	rs73890732	G	A	g	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr3	195195615	195195616	chr3:195195616:A:C	rs78459297	A	C	a	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr3	195513873	195513874	chr3:195513874:T:C	rs823499	T	C	.	Sox3.mouse_HMG_3	14	1	-	3.4025001005591244	-2.979446065867787	GATGAATGCATGTCATT
chr3	195584878	195584879	chr3:195584879:G:A	rs17838868	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr3	195696642	195696643	chr3:195696643:G:C	rs536769676	G	C	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr3	195696652	195696653	chr3:195696653:G:A	rs12330794	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr3	195711608	195711609	chr3:195711609:A:C	rs2641761	A	C	C	Sox3.mouse_HMG_3	1	1	-	9.919895520811668	9.789842392563472	GTTGAATGGCATTCCTG
chr3	195727659	195727660	chr3:195727660:G:A	rs115400399	G	A	N	Sox3.mouse_HMG_3	0	1	-	6.730856560481675	8.185727205818539	CATGAAAGATATTCAAT
chr3	195746748	195746749	chr3:195746749:A:G	rs712006	A	G	-	Sox3.mouse_HMG_3	14	1	-	3.124385257084536	3.124385257084536	CAGGAATTCCATTCTTG
chr3	195954764	195954765	chr3:195954765:G:A	rs3844935	G	A	-	Sox3.mouse_HMG_3	7	1	+	3.688772227170093	-2.8647764874876347	CGTGAATGTGATTCACG
chr3	195980967	195980968	chr3:195980968:C:G	rs368397555	C	G	-	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr3	196047669	196047670	chr3:196047670:T:A	rs6772320	T	A	T	Sox3.mouse_HMG_3	1	1	-	1.3214995720893088	-1.6485772360997855	TATGAGTGCCAGCCAGG
chr3	196071075	196071076	chr3:196071076:G:C	rs3761717	G	C	C	Sox3.mouse_HMG_3	12	1	+	2.6882141007324316	2.876435379653575	TATGTATGTCAGGCATT
chr3	196194439	196194440	chr3:196194440:G:A	rs9325434	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr3	196413107	196413108	chr3:196413108:A:T	rs4916493	A	T	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr3	196501640	196501641	chr3:196501641:G:A	rs73219648	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr3	196533480	196533481	chr3:196533481:G:A	rs6583317	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr3	196600136	196600137	chr3:196600137:C:T	rs9858309	C	T	T	Sox3.mouse_HMG_3	16	1	-	2.6615798671930415	2.625639410740516	AGTGAATGGTGATCATG
chr3	197216158	197216159	chr3:197216159:T:C	rs28524078	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr3	197471248	197471249	chr3:197471249:G:A	rs112447606	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr3	197485852	197485853	chr3:197485853:C:T	rs9824358	C	T	C	Sox3.mouse_HMG_3	16	1	-	5.370055259152222	5.3341148026996965	TCTCAATGCCATTCAAG
chr3	197595870	197595871	chr3:197595871:T:C	rs73890770	T	C	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr3	197601343	197601344	chr3:197601344:T:C	rs6583239	T	C	.	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr3	197899363	197899364	chr3:197899364:T:A	rs7642725	T	A	A	Sox3.mouse_HMG_3	4	1	-	4.107789891985464	-2.499650772493249	GTTGAATTGCTGTCAGA
chr3	197943257	197943258	chr3:197943258:T:C	rs1469652983	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	482497	482498	chr4:482498:C:T	rs7692639	C	T	-	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr4	578003	578004	chr4:578004:A:G	rs72611195	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr4	603273	603274	chr4:603274:T:C	rs143617741	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr4	1291032	1291033	chr4:1291033:A:G	rs2178441	A	G	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	1573230	1573231	chr4:1573231:C:T	rs114814748	C	T	C	Sox3.mouse_HMG_3	11	1	-	4.972861203484377	0.3226864776782391	TGTGAATGTGAGTCAAT
chr4	1661472	1661473	chr4:1661473:C:T	rs76507605	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr4	1661483	1661484	chr4:1661484:G:A	rs80355600	G	A	G	Sox3.mouse_HMG_3	16	1	-	3.270466739644578	4.137393479116857	TGTGAAGGTCATTCAGC
chr4	1967722	1967723	chr4:1967723:G:T	rs28541559	G	T	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr4	1994942	1994943	chr4:1994943:G:A	rs513895	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr4	2465474	2465475	chr4:2465475:A:G	rs3135149	A	G	G	Sox3.mouse_HMG_3	6	1	-	6.675627710032954	0.06767706849215649	TTTGAATGACAGACATT
chr4	2564448	2564449	chr4:2564449:C:T	rs79302885	C	T	c	Sox3.mouse_HMG_3	4	1	-	5.433147868658097	11.815964596652165	GATGGAAGTCATTCATG
chr4	2652119	2652120	chr4:2652120:A:C	rs2237002	A	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr4	3142419	3142420	chr4:3142420:A:C	rs363071	A	C	A	Sox3.mouse_HMG_3	2	1	-	1.238512229229966	-5.510467732641637	TTTGCATTCCCTTCATG
chr4	3259399	3259400	chr4:3259400:A:G	rs3135171	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr4	3595254	3595255	chr4:3595255:C:T	rs911032	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr4	3716871	3716872	chr4:3716872:C:A	rs2748780	C	A	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr4	3783023	3783024	chr4:3783024:G:A	rs4077781	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr4	3948398	3948399	chr4:3948399:T:C	rs62289009	T	C	-	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr4	4289129	4289130	chr4:4289130:A:G	rs77795925	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.7335713818888587	-4.87437925965194	TGTGAATGTCACCCATT
chr4	4306452	4306453	chr4:4306453:C:T	rs894487	C	T	C	Sox3.mouse_HMG_3	16	1	-	7.739981707825722	7.704041251373196	TGTGAACTTCATTCATG
chr4	4490083	4490084	chr4:4490084:C:T	rs1992391	C	T	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr4	4573005	4573006	chr4:4573006:C:G	chr4:4573006:C:G	C	G	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	4670734	4670735	chr4:4670735:G:C	rs5013993	G	C	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr4	4825419	4825420	chr4:4825420:T:C	rs6839681	T	C	C	Sox3.mouse_HMG_3	15	1	+	3.0288830393382	-1.6855103723768683	TATGAGATTTATTCATT
chr4	4825431	4825432	chr4:4825432:C:T	rs2968697	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr4	4928778	4928779	chr4:4928779:T:C	rs10012063	T	C	T	Sox3.mouse_HMG_3	12	1	+	4.288345636952553	-1.9045079304482133	AATAAATGGTACTCAAA
chr4	4936854	4936855	chr4:4936855:G:A	rs59364262	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr4	4936896	4936897	chr4:4936897:G:A	rs10030572	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr4	5024848	5024849	chr4:5024849:A:G	rs9998195	A	G	G	Sox3.mouse_HMG_3	5	1	+	1.3209414822985093	-5.167893439772354	TCTGTATGTCATCCATG
chr4	5079830	5079831	chr4:5079831:G:A	rs6841845	G	A	G	Sox3.mouse_HMG_3	0	1	-	2.7548659826910322	4.209736628027897	CATCAGTTTCATTCATG
chr4	5157404	5157405	chr4:5157405:C:T	rs67749484	C	T	C	Sox3.mouse_HMG_3	9	1	+	4.76440160957894	4.772038286570686	GATGATTTCCATTGATG
chr4	5163053	5163054	chr4:5163054:G:C	rs66471422	G	C	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr4	5204174	5204175	chr4:5204175:A:C	rs148435267	A	C	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr4	5291887	5291888	chr4:5291888:G:A	rs6847251	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr4	5324998	5324999	chr4:5324999:C:T	rs10028484	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr4	5325083	5325084	chr4:5325084:G:A	rs80083491	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr4	5745564	5745565	chr4:5745565:C:T	rs1001180	C	T	C	Sox3.mouse_HMG_3	10	1	+	2.060022256386479	2.060022256386479	CATGAATTATCCTCATT
chr4	5815815	5815816	chr4:5815816:C:T	rs10009439	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr4	5844086	5844087	chr4:5844087:C:A	rs17749484	C	A	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	5968757	5968758	chr4:5968758:G:C	rs7672568	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr4	6032557	6032558	chr4:6032558:C:T	rs79258309	C	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr4	6112771	6112772	chr4:6112772:G:A	rs773585603	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	6155842	6155843	chr4:6155843:T:C	rs4383685	T	C	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr4	6155845	6155846	chr4:6155846:C:T	rs74738226	C	T	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr4	6175407	6175408	chr4:6175408:C:T	rs4689355	C	T	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr4	6232482	6232483	chr4:6232483:A:C	rs16838435	A	C	A	Sox3.mouse_HMG_3	9	1	-	2.028592146053798	-3.3189735383125116	GATCAATGCTGTTCAAT
chr4	6361685	6361686	chr4:6361686:G:C	rs12647559	G	C	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr4	6438892	6438893	chr4:6438893:T:G	rs16838844	T	G	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr4	6679723	6679724	chr4:6679724:T:C	rs150041042	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr4	6687928	6687929	chr4:6687929:A:G	rs7696812	A	G	G	Sox3.mouse_HMG_3	2	1	-	9.369972419692182	2.7640933014612514	GATGAATGGTCTTCAGA
chr4	6873986	6873987	chr4:6873987:T:C	rs6446546	T	C	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr4	7000282	7000283	chr4:7000283:C:T	rs138849467	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr4	7261475	7261476	chr4:7261476:T:C	rs34557121	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr4	7263907	7263908	chr4:7263908:G:A	rs867350	G	A	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr4	7275241	7275242	chr4:7275242:A:G	rs11726538	A	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr4	7275270	7275271	chr4:7275271:C:T	rs73206454	C	T	C	Sox3.mouse_HMG_3	3	1	-	2.87350561323397	-2.908059274295261	CATGACTTCGAGTCATG
chr4	7275271	7275272	chr4:7275272:A:G	rs11726541	A	G	A	Sox3.mouse_HMG_3	2	1	-	2.87350561323397	-3.7323735049969597	CATGACTTCGAGTCATG
chr4	7299185	7299186	chr4:7299186:G:T	rs28552802	G	T	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr4	7303370	7303371	chr4:7303371:G:A	rs4689691	G	A	g	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	7559883	7559884	chr4:7559884:C:A	rs73214661	C	A	C	Sox3.mouse_HMG_3	10	1	-	4.463609606605066	4.320508762964392	TATGAATGCAGGTCATG
chr4	7573081	7573082	chr4:7573082:G:C	rs6446610	G	C	C	Sox3.mouse_HMG_3	1	1	+	2.13570667689648	1.0589770994778784	GGTGAGTGGCAGACATG
chr4	7852684	7852685	chr4:7852685:G:A	rs28631977	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr4	7852693	7852694	chr4:7852694:T:C	rs56258008	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr4	7856876	7856877	chr4:7856877:A:G	rs114196247	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.638049832894913	-3.0763435788201554	ATTGATTGACGTTCATG
chr4	7886167	7886168	chr4:7886168:G:A	rs35154266	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr4	7886176	7886177	chr4:7886177:G:A	rs35905776	G	A	G	Sox3.mouse_HMG_3	13	1	-	8.697047743874947	2.089787133412927	AATGACTTGTATTCAAA
chr4	7949036	7949037	chr4:7949037:T:C	rs5012708	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr4	8266938	8266939	chr4:8266939:G:A	rs77641576	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr4	8266972	8266973	chr4:8266973:G:A	rs11727999	G	A	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr4	8277361	8277362	chr4:8277362:A:G	rs187737413	A	G	A	Sox3.mouse_HMG_3	9	1	-	8.101905849867908	8.09426917287616	AATGAATGCTCTTCAGA
chr4	8547334	8547335	chr4:8547335:G:C	rs191333104	G	C	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr4	8586490	8586491	chr4:8586491:G:T	rs4696852	G	T	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	8587708	8587709	chr4:8587709:A:G	rs9799721	A	G	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr4	8619444	8619445	chr4:8619445:G:A	rs61734020	G	A	g	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr4	8748524	8748525	chr4:8748525:A:G	rs36187983	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr4	8780056	8780057	chr4:8780057:C:T	rs144433760	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr4	9381520	9381521	chr4:9381521:T:C	rs115761655	T	C	t	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr4	9453007	9453008	chr4:9453008:A:G	rs2091391	A	G	-	Sox3.mouse_HMG_3	14	1	+	3.918665854865541	-2.4632803115613697	TCAGAATGACAGTCAGG
chr4	9779873	9779874	chr4:9779874:T:G	rs538151019	T	G	t	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr4	9951472	9951473	chr4:9951473:T:C	rs10006833	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr4	10171311	10171312	chr4:10171312:A:G	rs74824607	A	G	a	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr4	10182173	10182174	chr4:10182174:A:G	rs887728	A	G	a	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr4	10227036	10227037	chr4:10227037:G:A	rs61017581	G	A	g	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr4	10312125	10312126	chr4:10312126:A:G	rs10939835	A	G	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr4	10312132	10312133	chr4:10312133:T:G	rs12503603	T	G	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr4	10441759	10441760	chr4:10441760:T:G	rs4422413	T	G	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr4	10715969	10715970	chr4:10715970:A:T	rs61794306	A	T	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr4	11159039	11159040	chr4:11159040:A:C	rs12498472	A	C	C	Sox3.mouse_HMG_3	5	1	+	3.045386408040386	-3.5620542564383246	GCTGAATTTTATCCAGT
chr4	11182282	11182283	chr4:11182283:A:T	rs9291506	A	T	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr4	11446435	11446436	chr4:11446436:G:T	rs28368267	G	T	G	Sox3.mouse_HMG_3	7	1	+	3.6674586380436534	2.817425695813582	TTTAAATGCTATACATA
chr4	11455739	11455740	chr4:11455740:T:A	rs114022538	T	A	T	Sox3.mouse_HMG_3	14	1	-	4.165483526589395	-2.2164626398375153	AATGAATTCCATGGATG
chr4	11471962	11471963	chr4:11471963:A:G	rs150033163	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.180970244828647	-4.42698039671215	AAAGAATGCCAGTGATC
chr4	11480743	11480744	chr4:11480744:A:G	rs73093380	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr4	11599246	11599247	chr4:11599247:G:A	rs16884346	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr4	11626716	11626717	chr4:11626717:T:A	rs2865154	T	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr4	11735747	11735748	chr4:11735748:T:C	rs1388861	T	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr4	11840140	11840141	chr4:11840141:C:G	rs1492494	C	G	G	Sox3.mouse_HMG_3	9	1	+	6.217521287247275	0.8775922798727127	GATTAATTTCAGTCAGA
chr4	11889258	11889259	chr4:11889259:C:T	rs12640691	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr4	11889268	11889269	chr4:11889269:C:G	rs10939378	C	G	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr4	11909471	11909472	chr4:11909472:C:T	rs1387458	C	T	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr4	11909507	11909508	chr4:11909508:A:G	rs1387457	A	G	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	12162814	12162815	chr4:12162815:G:T	rs7675664	G	T	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr4	12449662	12449663	chr4:12449663:A:G	rs6846557	A	G	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr4	12912903	12912904	chr4:12912904:T:A	rs28505148	T	A	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	12922841	12922842	chr4:12922842:T:C	rs1513955	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	13212973	13212974	chr4:13212974:T:A	rs2903473	T	A	T	Sox3.mouse_HMG_3	6	1	+	6.001477722416959	-0.7495737627645116	CCTGAATTCTAATCATG
chr4	13698922	13698923	chr4:13698923:T:C	rs11725299	T	C	T	Sox3.mouse_HMG_3	13	1	+	1.8858354870455882	8.493096097507607	GTTGAATGGTAGTTCTG
chr4	13860388	13860389	chr4:13860389:T:C	rs10939519	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr4	14234815	14234816	chr4:14234816:G:A	rs1365184	G	A	G	Sox3.mouse_HMG_3	11	1	+	3.8506991377869983	-0.7994755880191409	AATGAACAGCAGTCATG
chr4	14716693	14716694	chr4:14716694:A:G	rs75420187	A	G	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr4	14716703	14716704	chr4:14716704:G:A	rs78067842	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr4	14726627	14726628	chr4:14726628:T:C	rs11737830	T	C	C	Sox3.mouse_HMG_3	16	1	-	1.6359412821918997	1.6718817386444254	TATGACTTGCCTTCAGA
chr4	14770427	14770428	chr4:14770428:T:C	rs73128642	T	C	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr4	14771755	14771756	chr4:14771756:T:G	rs6827895	T	G	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr4	14810351	14810352	chr4:14810352:T:G	rs13146004	T	G	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr4	14856405	14856406	chr4:14856406:C:T	rs67701072	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr4	14856441	14856442	chr4:14856442:A:T	chr4:14856442:A:T	A	T	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr4	14891853	14891854	chr4:14891854:T:C	rs61304755	T	C	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr4	15004171	15004172	chr4:15004172:C:T	rs1281187483	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr4	15004213	15004214	chr4:15004214:C:T	rs191240869	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr4	15038416	15038417	chr4:15038417:A:G	rs2702518	A	G	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr4	15239915	15239916	chr4:15239916:A:G	rs113707114	A	G	a	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr4	15261029	15261030	chr4:15261030:G:A	rs7690758	G	A	G	Sox3.mouse_HMG_3	10	1	-	4.028688427900618	4.028688427900618	TTTGAATTTCCGTCAAG
chr4	15316296	15316297	chr4:15316297:A:G	rs75346824	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr4	15332589	15332590	chr4:15332590:T:C	rs4698368	T	C	T	Sox3.mouse_HMG_3	11	1	+	7.491408902009241	1.4067980759072978	AGTGAATTACATTCTTG
chr4	15400928	15400929	chr4:15400929:T:C	rs181357007	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr4	15400934	15400935	chr4:15400935:G:A	rs186438435	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr4	15400947	15400948	chr4:15400948:G:A	rs78244049	G	A	G	Sox3.mouse_HMG_3	13	1	-	3.2111150619744704	-3.3961455484875502	CATGAATTACCTACATG
chr4	15490553	15490554	chr4:15490554:C:T	rs7439105	C	T	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr4	15598739	15598740	chr4:15598740:A:G	rs74799497	A	G	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr4	15894717	15894718	chr4:15894718:C:T	rs727488	C	T	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr4	16123854	16123855	chr4:16123855:A:G	rs543469796	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.83987283718172	-4.768077804359078	GATGAATTCTATGGAGA
chr4	16225864	16225865	chr4:16225865:A:G	rs1276730854	A	G	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr4	16225870	16225871	chr4:16225871:C:T	rs539874505	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr4	16571198	16571199	chr4:16571199:T:G	rs11725152	T	G	T	Sox3.mouse_HMG_3	2	1	+	2.1979923010209887	-4.550987660850616	AATGAATGGTTTTAAGG
chr4	16852656	16852657	chr4:16852657:A:G	rs11729973	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr4	17287920	17287921	chr4:17287921:T:C	rs13149912	T	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr4	17447195	17447196	chr4:17447196:A:C	rs17515919	A	C	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr4	17447214	17447215	chr4:17447215:C:T	rs2315267	C	T	T	Sox3.mouse_HMG_3	14	1	-	3.229851939048415	9.611798105475327	AAGGAATGATAGTCGTA
chr4	17516237	17516238	chr4:17516238:A:G	rs1551092	A	G	G	Sox3.mouse_HMG_3	6	1	-	3.899952823361583	-2.707997818179214	ACTGAATGCCAGCCAAA
chr4	17650407	17650408	chr4:17650408:G:C	rs6849704	G	C	g	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	17939403	17939404	chr4:17939404:G:C	rs73098848	G	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr4	18048365	18048366	chr4:18048366:T:A	rs10516317	T	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	18636397	18636398	chr4:18636398:C:T	rs2320979	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr4	19002339	19002340	chr4:19002340:G:A	chr4:19002340:G:A	G	A	g	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr4	19278979	19278980	chr4:19278980:T:C	rs147260965	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr4	19479483	19479484	chr4:19479484:C:G	rs62296709	C	G	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr4	19492811	19492812	chr4:19492812:C:T	rs4386602	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr4	19684567	19684568	chr4:19684568:G:A	rs7673978	G	A	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr4	19740094	19740095	chr4:19740095:C:G	rs13146601	C	G	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr4	19935410	19935411	chr4:19935411:G:A	rs16868928	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr4	20054146	20054147	chr4:20054147:G:T	rs6821740	G	T	g	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr4	20122545	20122546	chr4:20122546:G:A	rs184687689	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr4	20160397	20160398	chr4:20160398:G:T	chr4:20160398:G:T	G	T	G	Sox3.mouse_HMG_3	11	1	+	2.138909865952174	3.573345966247981	TGTAAATGCTAGACATG
chr4	20248335	20248336	chr4:20248336:T:C	rs755217550	T	C	T	Sox3.mouse_HMG_3	14	1	-	2.3251641643814414	-4.05678200204547	GCTGAATTGTCTTCAGC
chr4	20249894	20249895	chr4:20249895:A:G	rs7663557	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr4	20256145	20256146	chr4:20256146:G:A	rs6831088	G	A	A	Sox3.mouse_HMG_3	13	1	-	5.225891816780399	-1.3813687936816208	AAAGACTTGCATTCATA
chr4	20395461	20395462	chr4:20395462:C:T	rs7694498	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	20430733	20430734	chr4:20430734:C:A	rs60021161	C	A	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr4	20477494	20477495	chr4:20477495:A:G	rs475942	A	G	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr4	20543457	20543458	chr4:20543458:T:A	rs649424	T	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr4	20543468	20543469	chr4:20543469:A:G	rs3775825	A	G	A	Sox3.mouse_HMG_3	6	1	-	3.5193568119362935	-3.088593829604503	ACTCAATTGTATTCAGA
chr4	21455502	21455503	chr4:21455503:A:G	rs6843295	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr4	21593260	21593261	chr4:21593261:A:G	rs73254306	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr4	21764027	21764028	chr4:21764028:T:C	rs76552739	T	C	T	Sox3.mouse_HMG_3	6	1	+	3.031185524043662	-3.5767651174971355	TATGTATTTTAGTAATG
chr4	21840278	21840279	chr4:21840279:C:T	rs925575	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr4	21845923	21845924	chr4:21845924:C:T	rs1398832	C	T	C	Sox3.mouse_HMG_3	13	1	-	1.9684398189916548	2.193063755476299	TATGACTGTTATTGAGG
chr4	21887665	21887666	chr4:21887666:T:C	rs75286671	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr4	22050885	22050886	chr4:22050886:T:C	rs13101318	T	C	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr4	22110906	22110907	chr4:22110907:C:A	rs7675542	C	A	A	Sox3.mouse_HMG_3	9	1	+	10.10695719835072	4.052738573842401	GTTGAATGCCAGTCAAC
chr4	22110908	22110909	chr4:22110909:G:A	rs7675853	G	A	A	Sox3.mouse_HMG_3	11	1	+	10.10695719835072	5.456782472544582	GTTGAATGCCAGTCAAC
chr4	22597199	22597200	chr4:22597200:C:T	rs116918252	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr4	22606755	22606756	chr4:22606756:T:C	rs2581952	T	C	c	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr4	22715786	22715787	chr4:22715787:T:G	rs1485829	T	G	T	Sox3.mouse_HMG_3	16	1	-	5.229633822647794	3.211718023423019	GATGAATTGGAGTCTTA
chr4	23005825	23005826	chr4:23005826:T:C	rs73801333	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr4	23169314	23169315	chr4:23169315:T:C	rs12649499	T	C	C	Sox3.mouse_HMG_3	16	1	+	2.8338918155599213	1.9669650760876425	AATGAATTCCTTTCTTT
chr4	23355486	23355487	chr4:23355487:A:T	rs73092564	A	T	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr4	23378004	23378005	chr4:23378005:T:C	rs12505190	T	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	23383198	23383199	chr4:23383199:C:T	rs145797303	C	T	C	Sox3.mouse_HMG_3	9	1	+	4.028838872573666	4.036475549565412	GAAAAATGGCAGTCAAA
chr4	23815785	23815786	chr4:23815786:G:A	rs2932968	G	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr4	23819700	23819701	chr4:23819701:T:C	rs60276093	T	C	T	Sox3.mouse_HMG_3	5	1	-	6.541565225704644	0.05273030363378017	TTTCAATTTCATTCATT
chr4	23855420	23855421	chr4:23855421:G:A	rs10002477	G	A	A	Sox3.mouse_HMG_3	15	1	+	2.0005901767373464	2.859371523593767	CATAATTGGCATTCAGA
chr4	23891745	23891746	chr4:23891746:T:C	rs2970869	T	C	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr4	23930008	23930009	chr4:23930009:A:G	rs733109	A	G	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr4	23970633	23970634	chr4:23970634:T:C	rs10470808	T	C	T	Sox3.mouse_HMG_3	15	1	+	7.670872318941965	2.9564789072268973	AGTGGATTCCATTCATG
chr4	24261203	24261204	chr4:24261204:G:C	rs1969191	G	C	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr4	24269810	24269811	chr4:24269811:G:A	rs28665197	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr4	24524957	24524958	chr4:24524958:T:C	rs10517052	T	C	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr4	24552546	24552547	chr4:24552547:G:A	rs58666069	G	A	G	Sox3.mouse_HMG_3	6	1	+	1.6793628707399841	1.6793628707399841	CATGGAGGCTATTCAAA
chr4	24770267	24770268	chr4:24770268:G:C	rs546212125	G	C	G	Sox3.mouse_HMG_3	11	1	+	12.227805923867221	7.577631198061082	CATGAATGCTAGTCAAT
chr4	24887596	24887597	chr4:24887597:C:T	rs148170627	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr4	24909613	24909614	chr4:24909614:C:T	rs1976942	C	T	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr4	25020561	25020562	chr4:25020562:C:T	rs6844475	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr4	25020562	25020563	chr4:25020563:G:A	rs62409670	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr4	25083146	25083147	chr4:25083147:C:G	rs112992584	C	G	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr4	25505922	25505923	chr4:25505923:C:A	rs6814628	C	A	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr4	25630473	25630474	chr4:25630474:C:T	rs7670749	C	T	c	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr4	25783203	25783204	chr4:25783204:C:T	rs10019801	C	T	C	Sox3.mouse_HMG_3	11	1	-	5.93648117260666	1.2863064468005228	ACTTAATGGTAGTCATG
chr4	25811972	25811973	chr4:25811973:T:G	rs16877608	T	G	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr4	25814289	25814290	chr4:25814290:T:A	rs546632623	T	A	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr4	25988890	25988891	chr4:25988891:C:G	rs6856497	C	G	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr4	26015676	26015677	chr4:26015677:T:C	rs1027997	T	C	C	Sox3.mouse_HMG_3	1	1	-	0.2585598219798333	-2.8415701144574594	CATGCATGCCGGTCATC
chr4	26317986	26317987	chr4:26317987:A:T	rs11726888	A	T	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr4	26887431	26887432	chr4:26887432:C:T	rs9998368	C	T	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr4	27235001	27235002	chr4:27235002:T:C	rs35076070	T	C	T	Sox3.mouse_HMG_3	6	1	+	2.0156051753974564	-4.592345466143342	CATGAATTCATGTCATG
chr4	27279145	27279146	chr4:27279146:A:G	rs7689900	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr4	27540578	27540579	chr4:27540579:A:C	rs16879469	A	C	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr4	27974903	27974904	chr4:27974904:C:A	rs12511556	C	A	-	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr4	28440150	28440151	chr4:28440151:A:G	rs115557380	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr4	28879867	28879868	chr4:28879868:T:G	rs151219473	T	G	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr4	29004766	29004767	chr4:29004767:A:G	rs73803034	A	G	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr4	29081848	29081849	chr4:29081849:T:C	rs4692380	T	C	T	Sox3.mouse_HMG_3	2	1	+	4.0996686595317975	-2.5062104586991305	AATGAATTTCAGTGACA
chr4	29309428	29309429	chr4:29309429:C:T	rs1836781	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr4	29337169	29337170	chr4:29337170:T:A	rs6817180	T	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr4	30273759	30273760	chr4:30273760:A:T	rs28844639	A	T	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr4	30329159	30329160	chr4:30329160:A:G	rs6846199	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr4	30768174	30768175	chr4:30768175:T:A	rs4995324	T	A	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr4	30954726	30954727	chr4:30954727:A:T	rs4499665	A	T	A	Sox3.mouse_HMG_3	0	1	-	2.519165738462091	1.9628026911154994	TTTTAATGGCATTGATG
chr4	30966576	30966577	chr4:30966577:A:G	rs7687580	A	G	G	Sox3.mouse_HMG_3	6	1	-	2.580438324249509	-4.02751231729129	AAAAAATGACAGTCAAA
chr4	31052478	31052479	chr4:31052479:A:G	rs75344881	A	G	A	Sox3.mouse_HMG_3	9	1	+	2.6069968707748936	3.3212864879086483	AATGAATTCAATCCAAA
chr4	31138446	31138447	chr4:31138447:G:A	rs79898222	G	A	G	Sox3.mouse_HMG_3	13	1	-	5.283496655561962	-1.323763954900058	AATGACTGCTACTCATA
chr4	31155704	31155705	chr4:31155705:A:T	rs7692536	A	T	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr4	31236033	31236034	chr4:31236034:T:C	rs77476657	T	C	T	Sox3.mouse_HMG_3	5	1	-	2.728163843641344	-3.760671078429521	AATGAATTGAAGCCATT
chr4	31291679	31291680	chr4:31291680:T:G	rs7661417	T	G	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	31340265	31340266	chr4:31340266:C:T	rs972558	C	T	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr4	31366259	31366260	chr4:31366260:A:G	rs6834233	A	G	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr4	32022665	32022666	chr4:32022666:T:C	rs71598180	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	32024088	32024089	chr4:32024089:C:G	rs4299633	C	G	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr4	32207741	32207742	chr4:32207742:C:T	rs57256734	C	T	t	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	32212570	32212571	chr4:32212571:T:G	rs73128224	T	G	T	Sox3.mouse_HMG_3	8	1	-	10.366044340394733	10.546378318894615	AATGACTTACATTCATG
chr4	32498964	32498965	chr4:32498965:G:C	rs1838628	G	C	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	32616807	32616808	chr4:32616808:A:G	rs1822922	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.0212551651467354	-1.078874771290557	TAGTAATGTCAGTCATT
chr4	32616818	32616819	chr4:32616819:T:G	rs28830474	T	G	T	Sox3.mouse_HMG_3	12	1	+	2.0212551651467354	-4.359819681175175	TAGTAATGTCAGTCATT
chr4	32791309	32791310	chr4:32791310:A:T	rs7667944	A	T	A	Sox3.mouse_HMG_3	11	1	-	5.079296112928112	-1.0053147131738327	TATAAATTGTATACATT
chr4	33276606	33276607	chr4:33276607:A:G	rs2585971	A	G	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr4	34182636	34182637	chr4:34182637:C:T	rs188933090	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr4	34734006	34734007	chr4:34734007:G:A	rs186080835	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr4	34932705	34932706	chr4:34932706:A:T	rs10222767	A	T	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr4	35124389	35124390	chr4:35124390:A:T	rs9992553	A	T	t	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr4	35250619	35250620	chr4:35250620:G:C	rs4241565	G	C	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr4	35520886	35520887	chr4:35520887:T:A	rs4859308	T	A	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr4	35556624	35556625	chr4:35556625:A:G	rs6856131	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr4	36342189	36342190	chr4:36342190:G:A	rs114503530	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr4	36393250	36393251	chr4:36393251:A:G	rs35430316	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr4	36489192	36489193	chr4:36489193:C:T	rs6829274	C	T	C	Sox3.mouse_HMG_3	13	1	+	6.144691569795941	-0.4625690406660794	TTTTAATTTTAGTCATG
chr4	36489209	36489210	chr4:36489210:T:C	rs66827186	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr4	36792374	36792375	chr4:36792375:T:C	rs56084160	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr4	36893358	36893359	chr4:36893359:G:C	rs6531489	G	C	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr4	36964609	36964610	chr4:36964610:T:A	rs1444313	T	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr4	37001593	37001594	chr4:37001594:G:A	rs10032425	G	A	G	Sox3.mouse_HMG_3	3	1	+	4.97390888680682	-0.807656000722411	AAGGAATTTTATTCAGC
chr4	37110658	37110659	chr4:37110659:C:T	rs7692540	C	T	C	Sox3.mouse_HMG_3	8	1	+	1.36142718753084	1.099307442614734	TATCAATGCCTGTCAAG
chr4	37122670	37122671	chr4:37122671:G:A	rs28454606	G	A	g	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr4	37132374	37132375	chr4:37132375:G:C	rs6531516	G	C	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr4	37474610	37474611	chr4:37474611:T:C	rs1382984	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr4	37511154	37511155	chr4:37511155:G:T	rs2973268	G	T	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	37665469	37665470	chr4:37665470:A:T	rs76662056	A	T	A	Sox3.mouse_HMG_3	6	1	-	5.26557427910032	-1.4854772060811496	GATGAATTGGAGTCCTG
chr4	37728384	37728385	chr4:37728385:T:C	rs77089929	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr4	37930197	37930198	chr4:37930198:A:G	rs12650634	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	37986175	37986176	chr4:37986176:C:T	rs62298550	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr4	38119741	38119742	chr4:38119742:G:A	rs630428	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	38203625	38203626	chr4:38203626:G:A	rs6811656	G	A	G	Sox3.mouse_HMG_3	7	1	+	7.682631354070175	1.1290826394124467	CATGCATGGTATTCAGG
chr4	38290350	38290351	chr4:38290351:T:C	rs11939640	T	C	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr4	38410013	38410014	chr4:38410014:C:G	rs6819138	C	G	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	38461431	38461432	chr4:38461432:C:G	rs4832771	C	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr4	38461566	38461567	chr4:38461567:G:A	rs73243402	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr4	38566459	38566460	chr4:38566460:C:G	chr4:38566460:C:G	C	G	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr4	38574710	38574711	chr4:38574711:G:A	rs566866548	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr4	38574725	38574726	chr4:38574726:A:G	rs115238566	A	G	A	Sox3.mouse_HMG_3	1	1	+	6.971653809732173	3.87152387329488	CAGGAATGTCATTCAGG
chr4	38662509	38662510	chr4:38662510:T:C	rs73232881	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr4	38681456	38681457	chr4:38681457:T:G	chr4:38681457:T:G	T	G	T	Sox3.mouse_HMG_3	0	1	+	2.9859879326026126	3.254908786402366	TAGGAATTACGTTCATT
chr4	38702112	38702113	chr4:38702113:C:A	rs17582575	C	A	C	Sox3.mouse_HMG_3	7	1	-	0.9582590816109948	0.10822613938092251	TGTGAAAGTAAGTCATG
chr4	38753296	38753297	chr4:38753297:A:G	rs781257077	A	G	a	Sox3.mouse_HMG_3	11	1	-	3.4323845332805023	-2.652226292821443	AAGGAATGTTATGCATT
chr4	38855581	38855582	chr4:38855582:C:T	rs73811223	C	T	T	Sox3.mouse_HMG_3	1	1	-	5.364532070077569	8.46466200651486	TGTGAATGCCAGTTATC
chr4	39062505	39062506	chr4:39062506:G:C	rs2711942	G	C	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr4	39062541	39062542	chr4:39062542:A:C	rs2711941	A	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr4	39729788	39729789	chr4:39729789:G:A	rs12642132	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr4	40207453	40207454	chr4:40207454:C:G	rs78806878	C	G	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr4	40242213	40242214	chr4:40242214:G:A	rs79539994	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	40243529	40243530	chr4:40243530:T:C	rs76788449	T	C	T	Sox3.mouse_HMG_3	10	1	-	1.807685163699259	-4.800265477841539	TCTGGATGCCATCCATG
chr4	40303727	40303728	chr4:40303728:A:T	rs4078470	A	T	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr4	40486431	40486432	chr4:40486432:C:T	rs278959	C	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr4	40594532	40594533	chr4:40594533:C:T	rs12644343	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	40629458	40629459	chr4:40629459:C:A	rs12498424	C	A	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	40686718	40686719	chr4:40686719:T:C	rs2035383	T	C	.	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	41208804	41208805	chr4:41208805:A:C	rs13127574	A	C	A	Sox3.mouse_HMG_3	2	1	-	3.4344498803944807	-3.314530081477125	AATGAATGGTATAGAAA
chr4	41213531	41213532	chr4:41213532:G:A	chr4:41213532:G:A	G	A	G	Sox3.mouse_HMG_3	11	1	+	2.1810257646322557	-2.469148961173881	TTTGAATTCTAGTCCCA
chr4	41346933	41346934	chr4:41346934:G:A	rs116648826	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	41426583	41426584	chr4:41426584:T:C	rs56273903	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr4	41437834	41437835	chr4:41437835:A:G	rs4515195	A	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr4	41807029	41807030	chr4:41807030:T:G	rs2043901	T	G	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr4	41887219	41887220	chr4:41887220:T:C	rs6821891	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr4	42428034	42428035	chr4:42428035:T:A	rs13105200	T	A	A	Sox3.mouse_HMG_3	2	1	+	5.672209359532147	-0.055119354807475984	TCTGAATGTTATCCAAG
chr4	42447003	42447004	chr4:42447004:A:G	rs4861195	A	G	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr4	42597117	42597118	chr4:42597118:C:A	rs9995629	C	A	C	Sox3.mouse_HMG_3	13	1	+	1.9709701283150391	-4.411666545662337	GATGCATGCTAGGCAAA
chr4	42654325	42654326	chr4:42654326:G:C	rs930956	G	C	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr4	42658873	42658874	chr4:42658874:A:C	rs2575568	A	C	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr4	42853726	42853727	chr4:42853727:A:G	rs10009737	A	G	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr4	43204944	43204945	chr4:43204945:C:T	rs3922846	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr4	43316884	43316885	chr4:43316885:A:G	rs17457694	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr4	43485190	43485191	chr4:43485191:A:G	rs10030806	A	G	G	Sox3.mouse_HMG_3	14	1	+	2.9033736638445564	-3.478572502582354	AATTTATTGTATTCATT
chr4	43592214	43592215	chr4:43592215:A:G	rs13152823	A	G	a	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr4	44149554	44149555	chr4:44149555:T:C	rs16856761	T	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr4	44433667	44433668	chr4:44433668:T:C	rs13144404	T	C	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr4	44552089	44552090	chr4:44552090:C:T	rs12647715	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr4	44927677	44927678	chr4:44927678:T:C	rs73244663	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr4	45220448	45220449	chr4:45220449:A:C	rs348557	A	C	C	Sox3.mouse_HMG_3	0	1	+	3.2958135461435574	2.3973059481532837	ACTGAATTCCAGCCATC
chr4	45580663	45580664	chr4:45580664:C:T	rs1456515	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr4	47145931	47145932	chr4:47145932:C:T	rs772498672	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr4	47178459	47178460	chr4:47178460:A:G	rs79921381	A	G	A	Sox3.mouse_HMG_3	10	1	+	3.3991274951000268	-3.2088231464407695	GAGGAATTTCATTCTTT
chr4	47209756	47209757	chr4:47209757:T:G	rs6839998	T	G	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr4	47334828	47334829	chr4:47334829:A:T	rs9291305	A	T	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr4	47566946	47566947	chr4:47566947:A:G	rs6854584	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr4	47572719	47572720	chr4:47572720:T:C	rs17462259	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr4	47845102	47845103	chr4:47845103:G:T	rs12509420	G	T	G	Sox3.mouse_HMG_3	8	1	+	2.4632792411287854	1.7583768275347476	AATAAAGGGCATTCAAT
chr4	47855599	47855600	chr4:47855600:T:C	rs10030927	T	C	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr4	47953740	47953741	chr4:47953741:T:C	rs17573709	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr4	47990430	47990431	chr4:47990431:A:C	rs79646436	A	C	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr4	48042985	48042986	chr4:48042986:A:G	rs5005127	A	G	A	Sox3.mouse_HMG_3	11	1	-	2.463234949301226	-3.6213758768007183	CCTGAATTGCATTGAAT
chr4	48128167	48128168	chr4:48128168:T:C	rs11941829	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr4	48481912	48481913	chr4:48481913:T:C	rs7697851	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.194243157028402	-0.9058867794088903	AAAGAAAGATATTCAGA
chr4	48608943	48608944	chr4:48608944:T:C	rs776604	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr4	48742596	48742597	chr4:48742597:C:G	rs146398299	C	G	C	Sox3.mouse_HMG_3	11	1	-	4.076703612900883	-0.5734711129052534	AATGAATAGCAGTCCTG
chr4	49147805	49147806	chr4:49147806:G:C	rs183775288	G	C	.	Sox3.mouse_HMG_3	3	1	+	1.7575218445902097	-4.9919688911148405	AATGCATTCCATTCCAG
chr4	49149964	49149965	chr4:49149965:A:G	rs28971796	A	G	.	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr4	49654341	49654342	chr4:49654342:T:C	rs62635639	T	C	.	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr4	49657841	49657842	chr4:49657842:A:C	rs62636966	A	C	.	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr4	51974201	51974202	chr4:51974202:A:G	rs116137317	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr4	52096298	52096299	chr4:52096299:T:C	rs61796830	T	C	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr4	52315191	52315192	chr4:52315192:A:G	rs17612939	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	52317843	52317844	chr4:52317844:C:G	rs349383	C	G	G	Sox3.mouse_HMG_3	2	1	+	4.512848426534258	4.369747582893584	TACGGATTATATTCATA
chr4	52367131	52367132	chr4:52367132:C:G	rs6841896	C	G	G	Sox3.mouse_HMG_3	15	1	-	6.329440019899749	4.737637419277923	TATGACTTACAGTCAGA
chr4	52846546	52846547	chr4:52846547:C:G	rs9995861	C	G	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr4	52904639	52904640	chr4:52904640:G:T	rs78581563	G	T	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	52982338	52982339	chr4:52982339:T:C	rs11133239	T	C	T	Sox3.mouse_HMG_3	6	1	+	6.156690443082447	-0.4512601984583524	AATGAATGGTAGACACA
chr4	53223409	53223410	chr4:53223410:G:A	rs11929903	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr4	53598693	53598694	chr4:53598694:G:A	rs62325483	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr4	53616964	53616965	chr4:53616965:C:T	rs2668554	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	53705898	53705899	chr4:53705899:G:T	rs17083333	G	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr4	54273848	54273849	chr4:54273849:T:C	rs869978	T	C	T	Sox3.mouse_HMG_3	2	1	+	3.1703540265460672	-3.4355250916848634	TATGAATGCTCTTAAAG
chr4	54319379	54319380	chr4:54319380:C:G	rs75632910	C	G	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr4	54496016	54496017	chr4:54496017:A:G	rs17084406	A	G	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr4	54749908	54749909	chr4:54749909:G:A	rs56742409	G	A	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr4	54828722	54828723	chr4:54828723:G:C	rs2726619	G	C	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr4	54842657	54842658	chr4:54842658:A:G	rs871694	A	G	A	Sox3.mouse_HMG_3	9	1	-	4.353608197916414	4.345971520924667	GGTGGATTGTAGTCAGA
chr4	55080503	55080504	chr4:55080504:G:A	rs11936206	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr4	55346080	55346081	chr4:55346081:T:C	rs114379639	T	C	T	Sox3.mouse_HMG_3	9	1	+	2.8984574255140645	2.8908207485223185	GATGAATCATATTCTGG
chr4	55544620	55544621	chr4:55544621:T:C	rs7667741	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr4	55571993	55571994	chr4:55571994:T:C	rs11735654	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr4	55768755	55768756	chr4:55768756:G:A	rs73238325	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr4	55768761	55768762	chr4:55768762:C:T	rs73238326	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr4	56204081	56204082	chr4:56204082:A:G	rs6817929	A	G	G	Sox3.mouse_HMG_3	5	1	+	6.092468148135844	-0.39636677393502073	GGTGAATGGCAGGCAAG
chr4	56218774	56218775	chr4:56218775:G:A	rs57219225	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr4	56229299	56229300	chr4:56229300:G:A	rs35884565	G	A	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr4	56301274	56301275	chr4:56301275:A:G	rs149379820	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr4	56301283	56301284	chr4:56301284:C:T	rs116644572	C	T	C	Sox3.mouse_HMG_3	0	1	+	2.793925156896468	4.248795802233332	CATGAATGCTTTGCATT
chr4	56464720	56464721	chr4:56464721:G:C	rs144706236	G	C	G	Sox3.mouse_HMG_3	3	1	+	0.9733555337739228	-5.776135201931126	GGTGAATAGCATGCAAG
chr4	56680632	56680633	chr4:56680633:T:C	rs28529347	T	C	T	Sox3.mouse_HMG_3	10	1	-	0.9573697514821762	-5.650580890058621	TGTGAGTGGCATCCAAG
chr4	56959023	56959024	chr4:56959024:C:T	rs7668814	C	T	C	Sox3.mouse_HMG_3	13	1	+	3.0606687050565453	-3.5465919054054753	AAAGAAGTACAGTCATG
chr4	57045066	57045067	chr4:57045067:G:A	rs1024542647	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr4	57077215	57077216	chr4:57077216:A:G	rs10009533	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	57133419	57133420	chr4:57133420:C:T	rs12512048	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr4	57169185	57169186	chr4:57169186:T:C	rs4865194	T	C	T	Sox3.mouse_HMG_3	5	1	-	3.9171113293537583	-2.571723592717105	CAGGAATGTTAGTCACA
chr4	57282349	57282350	chr4:57282350:A:G	rs73819044	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr4	57309711	57309712	chr4:57309712:T:A	rs2535527	T	A	A	Sox3.mouse_HMG_3	3	1	-	2.851916020174899	1.7269864231894163	GATAAATTGAAGTCAAA
chr4	57342706	57342707	chr4:57342707:A:G	rs60019169	A	G	a	Sox3.mouse_HMG_3	1	1	+	1.0147008672007678	-2.0854290692365236	TATTAGTGGCAGTCAGA
chr4	57358900	57358901	chr4:57358901:G:A	rs4242010	G	A	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr4	57379035	57379036	chr4:57379036:G:A	rs1524682	G	A	G	Sox3.mouse_HMG_3	12	1	+	5.247742728802658	5.516006715397338	AATGAATGTTAAGCATA
chr4	57704994	57704995	chr4:57704995:C:A	rs35659385	C	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr4	57705031	57705032	chr4:57705032:G:A	rs35459915	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr4	57854971	57854972	chr4:57854972:T:C	rs13149584	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr4	58103455	58103456	chr4:58103456:A:C	rs2610175	A	C	C	Sox3.mouse_HMG_3	10	1	-	4.029305831333515	4.172406674974188	TATCAATTACTTTCATG
chr4	58510084	58510085	chr4:58510085:A:T	rs6554538	A	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr4	58515338	58515339	chr4:58515339:C:G	rs7670257	C	G	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr4	59597646	59597647	chr4:59597647:G:T	rs141532782	G	T	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr4	60041141	60041142	chr4:60041142:T:A	rs12650665	T	A	T	Sox3.mouse_HMG_3	12	1	+	1.7775563074206921	-4.335254552306538	TAGGAATTACAGTCTTT
chr4	60043161	60043162	chr4:60043162:T:C	rs77552522	T	C	T	Sox3.mouse_HMG_3	6	1	+	2.2542300117404794	-4.353720629800318	TCTGAATTGGATTCTTG
chr4	60043171	60043172	chr4:60043172:G:T	rs141652040	G	T	G	Sox3.mouse_HMG_3	16	1	+	2.2542300117404794	1.067300495535458	TCTGAATTGGATTCTTG
chr4	60043175	60043176	chr4:60043176:A:C	rs7674629	A	C	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	60123200	60123201	chr4:60123201:T:C	rs62305006	T	C	-	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr4	60562982	60562983	chr4:60562983:C:T	rs1866496	C	T	C	Sox3.mouse_HMG_3	9	1	+	2.495412660127097	2.503049337118843	TATGCATTGCATTGAAA
chr4	60562993	60562994	chr4:60562994:C:T	rs17090191	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	60588821	60588822	chr4:60588822:G:A	rs72640633	G	A	.	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr4	61003562	61003563	chr4:61003563:G:T	rs35942294	G	T	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr4	61171567	61171568	chr4:61171568:T:C	rs1026142	T	C	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr4	61312734	61312735	chr4:61312735:G:A	rs73216313	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr4	61402434	61402435	chr4:61402435:A:G	rs17238975	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr4	61427234	61427235	chr4:61427235:G:A	rs75131683	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr4	61933910	61933911	chr4:61933911:A:G	rs17082493	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr4	62232326	62232327	chr4:62232327:C:T	rs10026975	C	T	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr4	62260373	62260374	chr4:62260374:T:A	rs73823366	T	A	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr4	62448958	62448959	chr4:62448959:A:T	rs2697200	A	T	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	62706303	62706304	chr4:62706304:T:G	rs72630526	T	G	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr4	62900017	62900018	chr4:62900018:C:T	rs11131417	C	T	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr4	63831877	63831878	chr4:63831878:T:C	rs17637125	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr4	63832065	63832066	chr4:63832066:G:A	rs7666558	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr4	64783784	64783785	chr4:64783785:A:C	rs6551872	A	C	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr4	64893409	64893410	chr4:64893410:G:A	rs537018557	G	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr4	65566190	65566191	chr4:65566191:T:C	rs11931601	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr4	65589187	65589188	chr4:65589188:G:A	rs7440592	G	A	A	Sox3.mouse_HMG_3	10	1	-	1.5770976617864056	1.5770976617864056	GTTGGATTTCCTTCATA
chr4	65623624	65623625	chr4:65623625:G:A	rs150547186	G	A	G	Sox3.mouse_HMG_3	3	1	+	7.550036628434612	1.7684717409053825	TTAGAATTCTAGTCATA
chr4	65657430	65657431	chr4:65657431:G:A	rs11131608	G	A	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr4	65786290	65786291	chr4:65786291:A:G	rs35860765	A	G	A	Sox3.mouse_HMG_3	12	1	-	1.9440838807401053	-4.24876968666066	TGTGAGTTCTAGTCACA
chr4	65909362	65909363	chr4:65909363:G:A	rs6551975	G	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr4	66275887	66275888	chr4:66275888:G:A	rs17082199	G	A	G	Sox3.mouse_HMG_3	3	1	+	4.509579230442788	-1.2719856570864454	GAAGCATTGCAGTCATG
chr4	66294788	66294789	chr4:66294789:C:T	rs13151607	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr4	66367626	66367627	chr4:66367627:G:A	rs73224630	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr4	66399053	66399054	chr4:66399054:G:T	rs34331779	G	T	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr4	66430824	66430825	chr4:66430825:T:G	rs17087160	T	G	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr4	66640426	66640427	chr4:66640427:T:C	rs17733721	T	C	T	Sox3.mouse_HMG_3	11	1	+	1.918025597840174	-4.166585228261772	TGTGAATTGGGTTCATT
chr4	66872538	66872539	chr4:66872539:G:A	rs75269928	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	67343598	67343599	chr4:67343599:C:G	rs6830232	C	G	C	Sox3.mouse_HMG_3	3	1	-	5.216708193140777	-1.5327825425642718	CCTGAATTTTATTTATG
chr4	67451624	67451625	chr4:67451625:A:G	rs6823235	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr4	67451663	67451664	chr4:67451664:A:C	rs6823254	A	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr4	67521584	67521585	chr4:67521585:T:A	rs115587029	T	A	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr4	67580702	67580703	chr4:67580703:T:C	rs3775870	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr4	67634722	67634723	chr4:67634723:C:T	rs354861	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr4	67712736	67712737	chr4:67712737:A:C	rs59462621	A	C	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	67722712	67722713	chr4:67722713:T:C	rs2012551	T	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr4	67996243	67996244	chr4:67996244:C:T	rs1438407	C	T	c	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr4	68180992	68180993	chr4:68180993:T:C	rs12507309	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr4	68268112	68268113	chr4:68268113:T:A	rs532360054	T	A	T	Sox3.mouse_HMG_3	13	1	+	3.4230060189903777	3.6476299554750216	TGTGAATTTCATTTAAC
chr4	68411022	68411023	chr4:68411023:A:T	rs138322149	A	T	t	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr4	68411050	68411051	chr4:68411051:A:G	rs141824722	A	G	a	Sox3.mouse_HMG_3	6	1	-	13.266491035714466	6.658540394173672	AATGAATGACAGTCAGG
chr4	68462019	68462020	chr4:68462020:C:G	rs144869660	C	G	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr4	68748163	68748164	chr4:68748164:C:T	rs428529	C	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr4	68927506	68927507	chr4:68927507:T:C	rs10903221	T	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr4	69225267	69225268	chr4:69225268:C:A	rs4694201	C	A	.	Sox3.mouse_HMG_3	3	1	-	3.531924328335376	-3.374570156179339	GATGAATCATATTGAAG
chr4	69526267	69526268	chr4:69526268:C:T	rs1432323	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr4	69531689	69531690	chr4:69531690:G:A	rs11723463	G	A	A	Sox3.mouse_HMG_3	7	1	+	1.7854036447820478	-4.768145069875679	TTTGAATGTGAGTCACC
chr4	69531705	69531706	chr4:69531706:T:C	rs28830586	T	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr4	69549645	69549646	chr4:69549646:G:A	rs6824895	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr4	69580298	69580299	chr4:69580299:C:T	rs13140492	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr4	69809592	69809593	chr4:69809593:A:G	chr4:69809593:A:G	A	G	A	Sox3.mouse_HMG_3	8	1	+	1.1805483497088842	1.8036649968866973	AGAGAATGACAGGCATG
chr4	70174736	70174737	chr4:70174737:G:C	rs926057470	G	C	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr4	70174965	70174966	chr4:70174966:T:C	rs17148312	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr4	70280178	70280179	chr4:70280179:A:T	rs4694283	A	T	A	Sox3.mouse_HMG_3	0	1	-	2.4006729545985053	1.8443099072519136	TAGGAATTGCAGTCCTT
chr4	70306423	70306424	chr4:70306424:A:G	rs1017833	A	G	A	Sox3.mouse_HMG_3	1	1	-	4.961122841465729	3.7543401357989286	TTTAAATGTTAGTCAGA
chr4	70719314	70719315	chr4:70719315:T:G	rs1486950288	T	G	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr4	70858619	70858620	chr4:70858620:C:T	rs147152654	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr4	70944976	70944977	chr4:70944977:G:A	rs75473930	G	A	G	Sox3.mouse_HMG_3	3	1	+	2.542392306008087	-3.2391725815211414	TATGAATTGCAGTGTTT
chr4	71151256	71151257	chr4:71151257:A:G	rs7689135	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	71846664	71846665	chr4:71846665:A:C	rs1607739	A	C	.	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr4	71879549	71879550	chr4:71879550:G:A	rs17767445	G	A	.	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	72209044	72209045	chr4:72209045:G:T	rs28542548	G	T	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr4	72287116	72287117	chr4:72287117:T:C	rs72653979	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr4	72352564	72352565	chr4:72352565:C:A	rs180703074	C	A	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr4	72992135	72992136	chr4:72992136:A:G	rs13135890	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr4	73446650	73446651	chr4:73446651:A:C	rs28693791	A	C	-	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr4	73561236	73561237	chr4:73561237:C:G	rs28696705	C	G	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr4	73608142	73608143	chr4:73608143:G:A	rs75085493	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr4	73687096	73687097	chr4:73687097:G:C	rs1247608	G	C	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr4	73734955	73734956	chr4:73734956:T:G	rs16849934	T	G	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	73813938	73813939	chr4:73813939:T:C	rs13151869	T	C	T	Sox3.mouse_HMG_3	9	1	+	2.643270316344373	2.635633639352627	TGTAAATTCTATCCATG
chr4	73870995	73870996	chr4:73870996:T:C	rs111913680	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr4	73897862	73897863	chr4:73897863:G:A	rs116640942	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr4	73932228	73932229	chr4:73932229:T:A	rs352023	T	A	A	Sox3.mouse_HMG_3	5	1	-	0.9943687452510255	-5.613071919227687	AGTGAAGTGCCTTCATG
chr4	74267995	74267996	chr4:74267996:G:A	rs16850813	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	74408538	74408539	chr4:74408539:G:A	rs1389961	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr4	74516572	74516573	chr4:74516573:G:A	rs186404022	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr4	74608909	74608910	chr4:74608910:T:C	rs6821984	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr4	74966634	74966635	chr4:74966635:A:G	rs75468816	A	G	g	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr4	75221989	75221990	chr4:75221990:G:C	rs34329922	G	C	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr4	75222002	75222003	chr4:75222003:C:T	rs190084034	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr4	75288561	75288562	chr4:75288562:G:T	rs11099494	G	T	G	Sox3.mouse_HMG_3	3	1	+	4.587429010740881	-2.3190654737738323	GATGTATGTTATCCATT
chr4	75696326	75696327	chr4:75696327:G:A	rs13146314	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr4	75696339	75696340	chr4:75696340:G:T	rs4859545	G	T	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr4	75696345	75696346	chr4:75696346:A:G	rs76807472	A	G	A	Sox3.mouse_HMG_3	15	1	-	2.149568905697511	-2.5648245060175574	TGAGAATGCCAGACATA
chr4	75699650	75699651	chr4:75699651:G:A	rs1967495	G	A	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr4	75804910	75804911	chr4:75804911:C:G	rs443952	C	G	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr4	76069213	76069214	chr4:76069214:T:G	rs80060995	T	G	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr4	76120303	76120304	chr4:76120304:T:G	rs62299350	T	G	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr4	76126114	76126115	chr4:76126115:G:A	rs11729695	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr4	76260858	76260859	chr4:76260859:T:C	rs62300777	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr4	76679720	76679721	chr4:76679721:T:C	rs3943037	T	C	T	Sox3.mouse_HMG_3	14	1	-	5.553710986031944	-0.828235180394967	GCTGGATGGCATTCAGA
chr4	76782710	76782711	chr4:76782711:A:C	rs878956648	A	C	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr4	76809914	76809915	chr4:76809915:T:C	rs59816244	T	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr4	76809941	76809942	chr4:76809942:T:C	rs66996499	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr4	76886472	76886473	chr4:76886473:A:G	rs78111759	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr4	76920950	76920951	chr4:76920951:C:T	rs79217667	C	T	C	Sox3.mouse_HMG_3	10	1	+	4.283831688983149	4.283831688983149	TTTGAATTTTCTTCAAT
chr4	77269622	77269623	chr4:77269623:G:A	rs12643786	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr4	77269664	77269665	chr4:77269665:C:T	rs556131598	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr4	77311151	77311152	chr4:77311152:C:G	rs12651380	C	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	77320523	77320524	chr4:77320524:T:C	rs2866050	T	C	T	Sox3.mouse_HMG_3	1	1	-	5.487326771284724	2.3871968348474315	AAAGAATTGCATTCCTG
chr4	78005246	78005247	chr4:78005247:G:A	rs143341496	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	78197378	78197379	chr4:78197379:A:G	rs1996389	A	G	A	Sox3.mouse_HMG_3	15	1	-	5.804968836434761	1.090575424719693	ATTGTATGCCAGTCATT
chr4	78230559	78230560	chr4:78230560:C:T	rs1470989	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr4	78300891	78300892	chr4:78300892:T:C	rs12500443	T	C	C	Sox3.mouse_HMG_3	5	1	-	0.5840570152513663	-5.904777906819497	GATGAAAGGCAGCCAGT
chr4	78414190	78414191	chr4:78414191:G:T	rs1484333	G	T	G	Sox3.mouse_HMG_3	13	1	-	2.682646263364818	-3.699990410612558	GATGAATTACAGACTTT
chr4	78528542	78528543	chr4:78528543:G:T	rs9996383	G	T	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr4	78775417	78775418	chr4:78775418:C:G	rs182140866	C	G	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr4	78775444	78775445	chr4:78775445:A:G	rs890303	A	G	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	78786192	78786193	chr4:78786193:G:A	rs6838118	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr4	79060565	79060566	chr4:79060566:G:T	rs2622350	G	T	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr4	79211805	79211806	chr4:79211806:T:C	rs76689659	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr4	79552321	79552322	chr4:79552322:T:C	rs2165388	T	C	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr4	79588875	79588876	chr4:79588876:T:C	rs2903639	T	C	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr4	79743191	79743192	chr4:79743192:C:T	rs11721671	C	T	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr4	79743226	79743227	chr4:79743227:C:A	rs6833556	C	A	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	79743229	79743230	chr4:79743230:C:T	rs57185567	C	T	c	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr4	79847415	79847416	chr4:79847416:C:T	rs113286239	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr4	79851765	79851766	chr4:79851766:G:A	rs10021224	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr4	79854341	79854342	chr4:79854342:T:C	rs72651588	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr4	79883081	79883082	chr4:79883082:A:C	rs77432521	A	C	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr4	79980201	79980202	chr4:79980202:G:A	rs58036879	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr4	80077814	80077815	chr4:80077815:A:T	rs56339730	A	T	A	Sox3.mouse_HMG_3	4	1	+	4.970269837409162	-1.637170827069549	AATGATTCATATTCATG
chr4	80139681	80139682	chr4:80139682:A:G	rs2867702	A	G	A	Sox3.mouse_HMG_3	6	1	-	2.3884225791351152	-4.219528062405682	TGTTAATGGCGTTCATG
chr4	80140370	80140371	chr4:80140371:G:A	rs72868359	G	A	G	Sox3.mouse_HMG_3	7	1	+	2.0846580923060554	-4.4688906223516724	CATGAATGTCATACTAG
chr4	80172607	80172608	chr4:80172608:A:G	rs73831041	A	G	A	Sox3.mouse_HMG_3	2	1	-	1.2952494636620557	-5.310629654568874	TATGAATATCTGTCAAG
chr4	80226259	80226260	chr4:80226260:T:C	rs13141810	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr4	80264878	80264879	chr4:80264879:A:G	rs17466289	A	G	A	Sox3.mouse_HMG_3	2	1	-	1.6271290795523916	-4.97875003867854	GCTGAATGCCATTTGTA
chr4	80926675	80926676	chr4:80926676:A:G	rs115922515	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr4	81467490	81467491	chr4:81467491:T:C	rs77853436	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr4	81508910	81508911	chr4:81508911:C:T	rs142978951	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr4	81600842	81600843	chr4:81600843:G:A	chr4:81600843:G:A	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr4	81631683	81631684	chr4:81631684:T:G	rs10008592	T	G	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr4	81684795	81684796	chr4:81684796:C:T	rs11099495	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr4	82267667	82267668	chr4:82267668:C:T	rs17005556	C	T	T	Sox3.mouse_HMG_3	14	1	-	1.4716031985264568	7.853549364953367	CATGAAATACAGTCGTA
chr4	82370486	82370487	chr4:82370487:A:C	rs3828538	A	C	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr4	82564216	82564217	chr4:82564217:C:T	rs7694399	C	T	C	Sox3.mouse_HMG_3	13	1	+	10.591538838446532	3.984278227984513	AATGAATTACATTCCTG
chr4	82704772	82704773	chr4:82704773:G:C	rs72661289	G	C	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr4	82726643	82726644	chr4:82726644:A:G	rs9684074	A	G	A	Sox3.mouse_HMG_3	15	1	+	2.2165271667940676	1.357745819937647	TATGACTGATATACAAT
chr4	82747284	82747285	chr4:82747285:T:C	rs72906481	T	C	T	Sox3.mouse_HMG_3	6	1	+	5.305127393513286	-1.3028232480275093	GATAGATGATATTCATT
chr4	82901673	82901674	chr4:82901674:A:C	rs1379618	A	C	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr4	83106303	83106304	chr4:83106304:G:A	rs9685274	G	A	G	Sox3.mouse_HMG_3	9	1	-	2.595317700685227	2.602954377676973	TAAGAATTACAATCAGG
chr4	83204968	83204969	chr4:83204969:G:A	rs11730345	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr4	83204975	83204976	chr4:83204976:A:C	rs11726618	A	C	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr4	83204999	83205000	chr4:83205000:C:T	rs7680103	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr4	83556309	83556310	chr4:83556310:C:T	rs138610202	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr4	83640106	83640107	chr4:83640107:G:C	rs952239574	G	C	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	83679582	83679583	chr4:83679583:T:G	rs57980547	T	G	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr4	83791622	83791623	chr4:83791623:C:T	rs4693097	C	T	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr4	84108740	84108741	chr4:84108741:C:T	rs1950128	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr4	84108760	84108761	chr4:84108761:G:A	rs1950127	G	A	A	Sox3.mouse_HMG_3	16	1	+	2.850012833219763	2.8140723767672373	GAAGAATACCAGTCAAG
chr4	84686611	84686612	chr4:84686612:T:C	rs62303075	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr4	84728403	84728404	chr4:84728404:A:C	rs11097024	A	C	C	Sox3.mouse_HMG_3	12	1	-	4.921484536526664	-1.4595903097952456	CTGGAATTACAGTCATG
chr4	84937175	84937176	chr4:84937176:T:C	rs6848127	T	C	C	Sox3.mouse_HMG_3	5	1	-	4.981418121520024	-1.50741680055084	CTTGAATTTCAGTGATG
chr4	85402559	85402560	chr4:85402560:C:T	rs77363717	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr4	85499644	85499645	chr4:85499645:C:T	rs13434422	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr4	85608187	85608188	chr4:85608188:A:G	rs4453927	A	G	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr4	85794250	85794251	chr4:85794251:T:A	rs12503243	T	A	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr4	85833213	85833214	chr4:85833214:C:T	rs74363751	C	T	C	Sox3.mouse_HMG_3	8	1	-	1.6063209135729777	0.9832042663951641	TATCAATGGAAGTCAGA
chr4	85853639	85853640	chr4:85853640:A:C	rs345332	A	C	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr4	85898299	85898300	chr4:85898300:C:T	rs17410566	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr4	85938263	85938264	chr4:85938264:T:C	rs550805904	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr4	86536482	86536483	chr4:86536483:A:G	rs4607180	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr4	86847363	86847364	chr4:86847364:T:G	rs13149938	T	G	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr4	86957409	86957410	chr4:86957410:G:A	rs78051727	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr4	87038232	87038233	chr4:87038233:G:A	rs17012279	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr4	87038986	87038987	chr4:87038987:C:T	rs767314	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr4	87079055	87079056	chr4:87079056:A:C	rs144464693	A	C	A	Sox3.mouse_HMG_3	14	1	+	3.864545604980404	-2.5174005614465065	GATGAATCTTATCCAAG
chr4	87357230	87357231	chr4:87357231:G:T	rs115741611	G	T	G	Sox3.mouse_HMG_3	7	1	+	5.428073422347771	4.5780404801177	AATGGCTGGTATTCATA
chr4	87544006	87544007	chr4:87544007:G:A	chr4:87544007:G:A	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr4	87624114	87624115	chr4:87624115:G:A	rs182457640	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr4	87696330	87696331	chr4:87696331:A:G	rs56235599	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr4	87807040	87807041	chr4:87807041:C:T	rs9993794	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr4	87856262	87856263	chr4:87856263:A:T	rs72877143	A	T	A	Sox3.mouse_HMG_3	6	1	-	1.9658131375474293	-4.785238347634041	GATGAGTGATTTTCAAT
chr4	87969591	87969592	chr4:87969592:G:A	rs12502049	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr4	88148374	88148375	chr4:88148375:T:A	rs2725242	T	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr4	88159342	88159343	chr4:88159343:A:T	rs59172759	A	T	A	Sox3.mouse_HMG_3	10	1	+	1.291382117643139	-5.45966936753833	GGTGAATGGGATTCTGA
chr4	88282940	88282941	chr4:88282941:C:T	rs17732955	C	T	C	Sox3.mouse_HMG_3	13	1	+	2.3445736925315304	-4.262686917930489	TAAGGATTGCAGTCAAG
chr4	88336265	88336266	chr4:88336266:A:G	rs34947320	A	G	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr4	88525818	88525819	chr4:88525819:A:G	rs146924243	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr4	88894252	88894253	chr4:88894253:A:G	rs2704581	A	G	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr4	89055582	89055583	chr4:89055583:T:C	rs9996559	T	C	T	Sox3.mouse_HMG_3	4	1	-	3.456493437627978	-2.9263232903660903	GAAGATTGGTAGTCATC
chr4	89056382	89056383	chr4:89056383:C:T	rs17014988	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr4	89550093	89550094	chr4:89550094:T:A	rs2870004	T	A	A	Sox3.mouse_HMG_3	6	1	+	2.140677613366579	-4.610373871814892	TATGAATTATTTTCTAG
chr4	89826731	89826732	chr4:89826732:G:C	rs1811443	G	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr4	89869085	89869086	chr4:89869086:G:A	rs1372513	G	A	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr4	90515151	90515152	chr4:90515152:G:A	rs180921001	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr4	90544321	90544322	chr4:90544322:A:G	rs116046009	A	G	A	Sox3.mouse_HMG_3	11	1	-	5.518634546179614	-0.56597627992233	AGTGAGTTCTATTCATC
chr4	90739551	90739552	chr4:90739552:G:A	rs7687983	G	A	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr4	90841832	90841833	chr4:90841833:A:G	rs10021524	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr4	90875450	90875451	chr4:90875451:A:C	rs56664095	A	C	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr4	90996264	90996265	chr4:90996265:A:G	rs2035116	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr4	91256294	91256295	chr4:91256295:C:T	rs145929371	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr4	91256297	91256298	chr4:91256298:G:A	rs57373593	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr4	91529995	91529996	chr4:91529996:C:A	rs1516700	C	A	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	91916432	91916433	chr4:91916433:A:G	rs17303960	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	92385573	92385574	chr4:92385574:T:C	rs10012465	T	C	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr4	93299369	93299370	chr4:93299370:G:A	rs1207180921	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr4	93445207	93445208	chr4:93445208:G:A	rs1485033	G	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr4	93630336	93630337	chr4:93630337:C:T	rs10050006	C	T	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr4	93776828	93776829	chr4:93776829:T:C	rs893707	T	C	C	Sox3.mouse_HMG_3	15	1	-	6.188890494205041	5.330109147348621	TCTGAATGGTATGCAAG
chr4	93780001	93780002	chr4:93780002:A:C	rs114704088	A	C	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr4	94359975	94359976	chr4:94359976:A:G	chr4:94359976:A:G	A	G	a	Sox3.mouse_HMG_3	5	1	+	4.247233974577866	-2.241600947492999	TATGAATGCTTTTAATT
chr4	94520413	94520414	chr4:94520414:C:T	rs28491414	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr4	94520440	94520441	chr4:94520441:C:T	rs2433325	C	T	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	94714808	94714809	chr4:94714809:T:C	rs11934616	T	C	T	Sox3.mouse_HMG_3	14	1	-	4.126796704949811	-2.2551494614770995	TGTGAATGGTATTGAGC
chr4	94913591	94913592	chr4:94913592:G:C	rs116074099	G	C	g	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr4	95187411	95187412	chr4:95187412:A:G	rs3755880	A	G	a	Sox3.mouse_HMG_3	15	1	+	3.0332250914062318	2.1744437445498113	GATGCATTGTATTCCAG
chr4	95642577	95642578	chr4:95642578:C:G	rs7681580	C	G	G	Sox3.mouse_HMG_3	7	1	+	2.9531367395289823	9.206580861736374	AATGAAGCCTATTCATC
chr4	95705957	95705958	chr4:95705958:A:G	rs7680769	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	95705967	95705968	chr4:95705968:G:A	rs7681281	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	95772541	95772542	chr4:95772542:T:A	rs72684035	T	A	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr4	95836160	95836161	chr4:95836161:A:G	rs1369982	A	G	A	Sox3.mouse_HMG_3	11	1	-	4.104487616200873	-1.980123209901072	AATGAATGCTATATATT
chr4	96221231	96221232	chr4:96221232:T:C	rs116561397	T	C	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	96352505	96352506	chr4:96352506:A:G	rs9998383	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr4	96672643	96672644	chr4:96672644:T:A	chr4:96672644:T:A	T	A	T	Sox3.mouse_HMG_3	10	1	-	1.8382003478518565	-4.912851137329614	GATGATTTTCATACAGA
chr4	97013513	97013514	chr4:97013514:T:C	rs76548242	T	C	T	Sox3.mouse_HMG_3	1	1	-	3.9910443434091025	0.8909144069718118	AATGATTTATATTAATG
chr4	97514237	97514238	chr4:97514238:T:C	rs966380	T	C	T	Sox3.mouse_HMG_3	8	1	-	3.4795286885643355	4.102645335742149	AATGCAATATATTCATG
chr4	97628149	97628150	chr4:97628150:T:G	rs115727694	T	G	T	Sox3.mouse_HMG_3	2	1	+	3.687680064104919	-3.061299897766684	TTTGCATTCTATTCAGT
chr4	98491812	98491813	chr4:98491813:A:G	rs149719458	A	G	A	Sox3.mouse_HMG_3	5	1	+	2.395043926329459	-4.093790995741406	TTTTAATTTCATTCAGC
chr4	98556260	98556261	chr4:98556261:T:A	rs13134231	T	A	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr4	98656693	98656694	chr4:98656694:A:T	rs4699664	A	T	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr4	98722320	98722321	chr4:98722321:G:A	rs17566763	G	A	g	Sox3.mouse_HMG_3	4	1	+	3.4052258931864694	9.788042621180537	GAGGGATGCTATTCAAA
chr4	98745090	98745091	chr4:98745091:T:C	rs2866023	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.9962108714722486	-0.10391906496504233	TATGAATTATACCCAAG
chr4	98759583	98759584	chr4:98759584:A:G	rs11933538	A	G	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr4	99384771	99384772	chr4:99384772:A:G	rs2584458	A	G	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr4	99414428	99414429	chr4:99414429:T:C	rs284785	T	C	T	Sox3.mouse_HMG_3	2	1	+	2.659098784023505	-3.9467803342074266	AATGAGTGAAAGTCATT
chr4	99438330	99438331	chr4:99438331:A:G	rs60003800	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr4	99652983	99652984	chr4:99652984:G:A	rs1018895130	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr4	99724665	99724666	chr4:99724666:C:T	rs72917476	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	99821450	99821451	chr4:99821451:G:A	rs6814895	G	A	A	Sox3.mouse_HMG_3	11	1	+	3.293305268959768	-1.3568694568463708	TATGTATTCTAGTAATG
chr4	100014874	100014875	chr4:100014875:C:T	rs6811559	C	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr4	100086031	100086032	chr4:100086032:C:T	rs12502279	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr4	100125035	100125036	chr4:100125036:A:C	rs4602501	A	C	A	Sox3.mouse_HMG_3	10	1	+	4.4618557076808205	-2.289195777500649	CATATATGTTATTCATG
chr4	100192963	100192964	chr4:100192964:A:T	rs3765637	A	T	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr4	100241513	100241514	chr4:100241514:C:T	rs116692903	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr4	100289686	100289687	chr4:100289687:C:T	rs72690310	C	T	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr4	100417976	100417977	chr4:100417977:T:C	rs75944035	T	C	T	Sox3.mouse_HMG_3	16	1	-	6.6791970115452735	6.715137467997799	GGAGAATTATATTCAAA
chr4	100419951	100419952	chr4:100419952:G:A	rs4323110	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr4	100510927	100510928	chr4:100510928:G:A	rs3775367	G	A	G	Sox3.mouse_HMG_3	8	1	+	1.7315697394873004	1.1084530923094877	AATGACTGGTAGGCAAA
chr4	100549499	100549500	chr4:100549500:G:C	rs11728780	G	C	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr4	100632594	100632595	chr4:100632595:G:T	rs6834962	G	T	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr4	100656781	100656782	chr4:100656782:C:T	rs13105095	C	T	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr4	100782415	100782416	chr4:100782416:C:A	rs7689970	C	A	A	Sox3.mouse_HMG_3	7	1	-	0.7898230851563235	-0.060209857073749706	CGTGATCGCCATTCATG
chr4	100827640	100827641	chr4:100827641:T:C	rs62305834	T	C	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr4	100962882	100962883	chr4:100962883:G:A	rs977603	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr4	101230960	101230961	chr4:101230961:T:C	rs78180740	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr4	101251268	101251269	chr4:101251269:T:C	rs3804410	T	C	T	Sox3.mouse_HMG_3	15	1	+	3.622809586221701	-1.0915838254933672	AATGAAATATATTTATG
chr4	101588704	101588705	chr4:101588705:T:C	rs2723060	T	C	C	Sox3.mouse_HMG_3	12	1	+	3.75097934792412	-2.4418742194766465	TCTTAATTTTAGTCATT
chr4	101824827	101824828	chr4:101824828:C:T	rs1125271	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr4	102390515	102390516	chr4:102390516:A:C	rs1117522	A	C	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr4	102723419	102723420	chr4:102723420:C:T	rs75796437	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr4	102825964	102825965	chr4:102825965:T:G	rs17196685	T	G	T	Sox3.mouse_HMG_3	14	1	-	2.276647459722655	-4.1052987067042555	ATTGAAGGTCAGTCAGT
chr4	102825988	102825989	chr4:102825989:T:G	rs189301948	T	G	-	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	102825989	102825990	chr4:102825990:T:A	rs140906364	T	A	-	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr4	103567006	103567007	chr4:103567007:T:A	rs418405	T	A	T	Sox3.mouse_HMG_3	2	1	+	5.206655867107753	-0.5206728472318692	TCTGAATGATAGTAATT
chr4	103567009	103567010	chr4:103567010:A:G	rs139571249	A	G	A	Sox3.mouse_HMG_3	5	1	+	5.206655867107753	-1.2821790549631107	TCTGAATGATAGTAATT
chr4	103567030	103567031	chr4:103567031:T:C	rs447619	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr4	104895251	104895252	chr4:104895252:G:A	rs148944051	G	A	G	Sox3.mouse_HMG_3	7	1	+	1.9223356000670093	-4.631213114590718	CTTGAATGTGAGTCAGC
chr4	104971819	104971820	chr4:104971820:T:C	rs28438377	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr4	105141283	105141284	chr4:105141284:C:T	rs114613199	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr4	105150862	105150863	chr4:105150863:C:G	rs4699159	C	G	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr4	105280625	105280626	chr4:105280626:G:A	rs73838073	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr4	105401138	105401139	chr4:105401139:A:G	rs17035557	A	G	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr4	105642249	105642250	chr4:105642250:T:A	rs1447099	T	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr4	107870545	107870546	chr4:107870546:C:T	rs10005091	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr4	108008261	108008262	chr4:108008262:C:G	rs3796987	C	G	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr4	108270998	108270999	chr4:108270999:G:A	rs72662212	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr4	108304129	108304130	chr4:108304130:A:G	rs13353615	A	G	a	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr4	108370954	108370955	chr4:108370955:T:C	rs6842122	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr4	108547754	108547755	chr4:108547755:C:T	rs11097994	C	T	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr4	108703612	108703613	chr4:108703613:T:C	rs141613601	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr4	108804766	108804767	chr4:108804767:G:C	rs2044993	G	C	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr4	108893769	108893770	chr4:108893770:A:G	rs4615248	A	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr4	108957706	108957707	chr4:108957707:C:T	rs12639812	C	T	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr4	108992287	108992288	chr4:108992288:G:A	rs28734824	G	A	A	Sox3.mouse_HMG_3	0	1	+	2.689430402949276	1.8641465018029306	GTTGAAGGCCATTAATA
chr4	108992289	108992290	chr4:108992290:T:G	rs28538944	T	G	G	Sox3.mouse_HMG_3	2	1	+	2.689430402949276	-4.0595495589223285	GTTGAAGGCCATTAATA
chr4	108992312	108992313	chr4:108992313:T:C	rs4330419	T	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr4	109052964	109052965	chr4:109052965:C:T	rs7687817	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr4	109060607	109060608	chr4:109060608:C:T	rs3113684	C	T	T	Sox3.mouse_HMG_3	7	1	-	1.425100272305415	-5.128448442352313	AATGAGAGACATTCAGA
chr4	109172528	109172529	chr4:109172529:T:C	rs35719907	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr4	109492639	109492640	chr4:109492640:T:C	rs1342215463	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr4	109589552	109589553	chr4:109589553:C:G	rs9997315	C	G	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr4	109669664	109669665	chr4:109669665:G:A	rs4698776	G	A	a	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr4	109991174	109991175	chr4:109991175:T:C	rs151164818	T	C	T	Sox3.mouse_HMG_3	15	1	+	2.853469117322492	-1.860924294392576	AATGAATTTTAGCAATA
chr4	110617289	110617290	chr4:110617290:C:A	rs76739087	C	A	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr4	110669087	110669088	chr4:110669088:C:T	rs2122076	C	T	C	Sox3.mouse_HMG_3	8	1	+	3.405453136564934	3.143333391648828	AAAGAATGCCATTGAAG
chr4	110683681	110683682	chr4:110683682:C:T	rs1009664407	C	T	C	Sox3.mouse_HMG_3	7	1	-	0.6368571401656056	-5.9166915744921225	GCCGAATGGCAGTCCTA
chr4	110799840	110799841	chr4:110799841:T:G	rs2129979	T	G	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr4	110923292	110923293	chr4:110923293:T:C	rs441624	T	C	C	Sox3.mouse_HMG_3	14	1	-	4.706629620437715	-1.6753165459891957	ATTTAATGTCATTCAGA
chr4	111208198	111208199	chr4:111208199:C:T	rs9790778	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr4	111270956	111270957	chr4:111270957:G:A	rs10434010	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	111283331	111283332	chr4:111283332:A:G	rs558313363	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr4	111992801	111992802	chr4:111992802:A:T	rs17589233	A	T	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr4	112039142	112039143	chr4:112039143:G:C	rs79605084	G	C	g	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr4	112039168	112039169	chr4:112039169:C:A	chr4:112039169:C:A	C	A	c	Sox3.mouse_HMG_3	8	1	+	4.628793019765544	4.448459041265663	CAGGAATTCTAGTCAAT
chr4	112214840	112214841	chr4:112214841:G:A	rs77798961	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr4	112285328	112285329	chr4:112285329:C:G	rs537667151	C	G	C	Sox3.mouse_HMG_3	7	1	-	4.790712196910446	-1.4627319252969426	AACGAATGCCATTTATG
chr4	112356256	112356257	chr4:112356257:C:T	rs79814021	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	112546676	112546677	chr4:112546677:A:T	rs79954018	A	T	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr4	112853890	112853891	chr4:112853891:A:G	rs17045059	A	G	A	Sox3.mouse_HMG_3	15	1	-	5.13164651053955	0.417253098824482	AATGAATGACACTTATG
chr4	112853908	112853909	chr4:112853909:A:C	rs11098179	A	C	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr4	112861769	112861770	chr4:112861770:T:C	rs895763	T	C	C	Sox3.mouse_HMG_3	0	1	+	4.498787683113503	3.04391703777664	TATGAATTGCACTAATT
chr4	113057122	113057123	chr4:113057123:C:T	rs313985	C	T	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	113183527	113183528	chr4:113183528:A:G	rs6847102	A	G	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr4	113367905	113367906	chr4:113367906:G:A	rs114788911	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.2258169054483858	-4.555747982080846	TGTGGATGCCAGGCATA
chr4	113467663	113467664	chr4:113467664:A:G	rs2285703	A	G	A	Sox3.mouse_HMG_3	9	1	-	2.8197262667711276	2.8120895897793816	TATTATTGATATTCATC
chr4	113503782	113503783	chr4:113503783:C:T	rs78455205	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr4	113756604	113756605	chr4:113756605:T:C	rs1859233	T	C	T	Sox3.mouse_HMG_3	12	1	+	2.5781473409414515	-3.6147062264593153	AATGAGTGTTATTAAAA
chr4	113767122	113767123	chr4:113767123:A:G	rs75843396	A	G	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr4	114017158	114017159	chr4:114017159:A:T	rs4834375	A	T	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr4	114121279	114121280	chr4:114121280:A:G	rs10021913	A	G	G	Sox3.mouse_HMG_3	5	1	+	7.103430793019556	0.6145958709486926	ATTGAATGCTTTTCATT
chr4	114280759	114280760	chr4:114280760:C:T	rs10049636	C	T	C	Sox3.mouse_HMG_3	11	1	-	2.8693352792021143	-1.7808394466040234	ACTGAATTCTAGGCAAA
chr4	114534995	114534996	chr4:114534996:G:A	rs12503513	G	A	G	Sox3.mouse_HMG_3	9	1	-	3.8122953487903404	3.8199320257820863	AAAGAATGGCATTTAAA
chr4	114650423	114650424	chr4:114650424:A:G	rs10857033	A	G	G	Sox3.mouse_HMG_3	11	1	-	2.467720033559126	-3.6168907925428195	TTGGAATGCTATGCATG
chr4	114729764	114729765	chr4:114729765:C:T	rs111247876	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr4	115332338	115332339	chr4:115332339:T:G	rs6533853	T	G	T	Sox3.mouse_HMG_3	2	1	+	5.937246178648462	-0.8117337832231402	GGTGAGTGACATTCAGG
chr4	115847050	115847051	chr4:115847051:G:A	rs1011610111	G	A	G	Sox3.mouse_HMG_3	12	1	+	1.9958769096748297	2.2641408962695095	AATGAATGTTTGGCATT
chr4	116439085	116439086	chr4:116439086:A:G	rs13110347	A	G	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr4	116577190	116577191	chr4:116577191:T:A	rs71606781	T	A	t	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr4	116603613	116603614	chr4:116603614:C:G	rs7679562	C	G	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	116619988	116619989	chr4:116619989:C:T	rs7674092	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr4	116942670	116942671	chr4:116942671:C:G	rs4834600	C	G	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr4	116973595	116973596	chr4:116973596:T:C	rs1992343	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr4	117383622	117383623	chr4:117383623:G:A	rs191277255	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr4	117484160	117484161	chr4:117484161:T:C	rs17874752	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr4	117814778	117814779	chr4:117814779:A:G	rs11562851	A	G	A	Sox3.mouse_HMG_3	9	1	-	4.734501036513103	4.726864359521357	CCTGATTTGTATTCATT
chr4	117850730	117850731	chr4:117850731:G:A	rs28791500	G	A	A	Sox3.mouse_HMG_3	3	1	+	6.00203335708974	0.22046846956050792	TGTGAAATGCATTCAAA
chr4	118839466	118839467	chr4:118839467:T:A	rs114820866	T	A	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr4	118850325	118850326	chr4:118850326:G:A	rs17324912	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr4	118894946	118894947	chr4:118894947:A:G	rs62326783	A	G	A	Sox3.mouse_HMG_3	11	1	-	1.3953508193418935	-4.689260006760052	TGTGACTTCCATTGATG
chr4	119028192	119028193	chr4:119028193:A:G	rs6534120	A	G	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr4	119203149	119203150	chr4:119203150:A:G	rs10006304	A	G	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr4	119304192	119304193	chr4:119304193:T:C	rs1397611	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	119315089	119315090	chr4:119315090:A:G	rs17595468	A	G	A	Sox3.mouse_HMG_3	5	1	+	4.624776511756399	-1.8640584103144633	ACTAAATGTCATTCAGA
chr4	119518093	119518094	chr4:119518094:A:G	rs534526888	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr4	120008105	120008106	chr4:120008106:A:C	rs76188907	A	C	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr4	120549064	120549065	chr4:120549065:A:G	rs4833650	A	G	A	Sox3.mouse_HMG_3	6	1	-	6.226004802530462	-0.3819458390103374	ACTGAGTTTCATTCATG
chr4	120549072	120549073	chr4:120549073:G:C	rs4833168	G	C	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr4	120669250	120669251	chr4:120669251:C:G	rs34776884	C	G	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr4	120671619	120671620	chr4:120671620:A:G	rs766624	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr4	120693637	120693638	chr4:120693638:T:G	rs115706117	T	G	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr4	120693657	120693658	chr4:120693658:A:C	rs13117731	A	C	A	Sox3.mouse_HMG_3	6	1	-	8.840079206683065	2.0890277215015933	TTAGAATTATATTCATG
chr4	121058028	121058029	chr4:121058029:T:A	rs1511092	T	A	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	121198293	121198294	chr4:121198294:C:T	rs17051321	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr4	121334035	121334036	chr4:121334036:A:G	rs6842132	A	G	A	Sox3.mouse_HMG_3	8	1	-	1.7425173762914457	2.0046371212075513	AGTGAGTGTTATTCCTA
chr4	121340440	121340441	chr4:121340441:A:T	rs12651331	A	T	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr4	121688711	121688712	chr4:121688712:G:C	rs6845202	G	C	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr4	121710247	121710248	chr4:121710248:A:T	rs908473212	A	T	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr4	121827840	121827841	chr4:121827841:A:C	rs1048433	A	C	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr4	121873859	121873860	chr4:121873860:G:A	rs17005276	G	A	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr4	121942251	121942252	chr4:121942252:T:C	rs13124223	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	122003183	122003184	chr4:122003184:G:A	rs6534331	G	A	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr4	122412021	122412022	chr4:122412022:T:C	rs12499753	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr4	122456326	122456327	chr4:122456327:C:A	rs2069763	C	A	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr4	122637067	122637068	chr4:122637068:A:G	rs1533237	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr4	122666674	122666675	chr4:122666675:A:T	rs72671045	A	T	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr4	122688005	122688006	chr4:122688006:T:G	rs443176	T	G	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr4	122710384	122710385	chr4:122710385:C:G	rs115116780	C	G	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr4	122908532	122908533	chr4:122908533:C:T	rs4833846	C	T	C	Sox3.mouse_HMG_3	8	1	-	2.227947278256055	1.604830631078241	TGTGGATGGTATACATT
chr4	123102917	123102918	chr4:123102918:A:G	rs11098692	A	G	A	Sox3.mouse_HMG_3	0	1	+	4.132784415793215	4.95806831693956	AATGCATTAAATTCATA
chr4	123233061	123233062	chr4:123233062:A:G	rs4479722	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr4	123466019	123466020	chr4:123466020:A:G	rs112955199	A	G	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr4	123594356	123594357	chr4:123594357:G:C	rs2589836	G	C	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr4	123651870	123651871	chr4:123651871:C:T	rs1364875	C	T	T	Sox3.mouse_HMG_3	15	1	-	4.7196502225819845	5.578431569438405	TTTGATTTTTATTCAGA
chr4	123682957	123682958	chr4:123682958:A:C	rs112339757	A	C	A	Sox3.mouse_HMG_3	14	1	+	7.96755106677222	1.5856049003453097	GTTGAATTTTTTTCATA
chr4	123706174	123706175	chr4:123706175:G:T	rs59869804	G	T	G	Sox3.mouse_HMG_3	3	1	+	2.8471258121808587	-4.059368672333855	AAAGAATATTAGTCATT
chr4	123716913	123716914	chr4:123716914:C:T	rs9654204	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr4	123772896	123772897	chr4:123772897:C:G	chr4:123772897:C:G	C	G	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr4	123815302	123815303	chr4:123815303:C:T	rs721455	C	T	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr4	123998583	123998584	chr4:123998584:G:A	rs1519241	G	A	A	Sox3.mouse_HMG_3	7	1	+	3.8794724739213367	-2.674076240736393	AATGAGCGGCAGTCATA
chr4	124020343	124020344	chr4:124020344:A:T	rs1040242	A	T	A	Sox3.mouse_HMG_3	16	1	+	2.712433031340728	1.5614439715882318	AATGGATGGCATCCAGA
chr4	124323427	124323428	chr4:124323428:T:C	rs6843899	T	C	C	Sox3.mouse_HMG_3	10	1	-	4.817207764094544	-1.7907428774462524	GATGAGTTTTATTAATA
chr4	124549721	124549722	chr4:124549722:G:C	rs17008358	G	C	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr4	124632664	124632665	chr4:124632665:T:G	rs313884	T	G	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr4	124637407	124637408	chr4:124637408:A:G	rs9307543	A	G	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr4	124686359	124686360	chr4:124686360:G:C	rs34944124	G	C	G	Sox3.mouse_HMG_3	11	1	+	3.7239398882139394	-0.926234837592198	TGTGAATTACAGACAGA
chr4	124760709	124760710	chr4:124760710:T:A	rs78381897	T	A	T	Sox3.mouse_HMG_3	6	1	+	1.8452601879494859	-4.905791297231985	TGTGAATTGTGTTGATG
chr4	124959084	124959085	chr4:124959085:G:C	rs12499593	G	C	G	Sox3.mouse_HMG_3	7	1	+	7.367927421486493	1.114483299279104	TTTGTATGACAGTCATG
chr4	125222533	125222534	chr4:125222534:T:C	rs13119981	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr4	125619556	125619557	chr4:125619557:A:G	rs72677781	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr4	125732862	125732863	chr4:125732863:C:T	rs4407521	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr4	125952023	125952024	chr4:125952024:T:A	rs965778	T	A	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr4	126038925	126038926	chr4:126038926:G:A	rs10020123	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr4	126267855	126267856	chr4:126267856:C:G	rs11730201	C	G	C	Sox3.mouse_HMG_3	11	1	-	3.3422403395675992	-1.3079343862385393	TGTGAATTCCAGTAAAT
chr4	126267883	126267884	chr4:126267884:C:A	rs75781349	C	A	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr4	126688636	126688637	chr4:126688637:G:A	rs17011435	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	126727615	126727616	chr4:126727616:G:C	rs112810011	G	C	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr4	126740339	126740340	chr4:126740340:C:A	rs17011535	C	A	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr4	126794458	126794459	chr4:126794459:T:A	rs76180920	T	A	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr4	126799307	126799308	chr4:126799308:A:T	rs12641236	A	T	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr4	126844070	126844071	chr4:126844071:C:T	rs79042149	C	T	c	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr4	126935947	126935948	chr4:126935948:C:T	rs62324472	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr4	126939893	126939894	chr4:126939894:T:C	rs10002550	T	C	T	Sox3.mouse_HMG_3	9	1	+	3.762212536646847	3.7545758596551	TATTAATTTTCTTCATA
chr4	127049723	127049724	chr4:127049724:T:C	rs56822169	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr4	127179280	127179281	chr4:127179281:T:C	rs4470646	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr4	127327707	127327708	chr4:127327708:G:A	rs1372965	G	A	G	Sox3.mouse_HMG_3	13	1	-	0.8943779471818296	-5.71288266328019	AGTGATTGGTAGTCGTA
chr4	127416255	127416256	chr4:127416256:G:A	rs2034077	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr4	127449074	127449075	chr4:127449075:C:T	rs55702172	C	T	C	Sox3.mouse_HMG_3	13	1	+	5.115451126037737	-1.4918094844242824	TTTGTATGGTATTCAAC
chr4	127449360	127449361	chr4:127449361:C:T	rs79228965	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	128258430	128258431	chr4:128258431:A:G	rs1851399	A	G	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr4	128298915	128298916	chr4:128298916:C:T	rs72683964	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr4	128347602	128347603	chr4:128347603:A:G	rs61587462	A	G	A	Sox3.mouse_HMG_3	15	1	-	3.654287800089163	-1.060105611625905	AATGAATTGTATGCTTT
chr4	128347606	128347607	chr4:128347607:A:G	chr4:128347607:A:G	A	G	A	Sox3.mouse_HMG_3	11	1	-	3.654287800089163	-2.430323026012783	AATGAATTGTATGCTTT
chr4	128380397	128380398	chr4:128380398:G:T	rs17013197	G	T	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr4	128387036	128387037	chr4:128387037:G:A	rs34526083	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr4	128387046	128387047	chr4:128387047:C:G	rs1040370123	C	G	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr4	128428250	128428251	chr4:128428251:C:T	rs144188006	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr4	128428269	128428270	chr4:128428270:T:C	rs72928249	T	C	T	Sox3.mouse_HMG_3	0	1	-	1.156056630906456	1.9813405320528	AGTGAATGGCAGAGATA
chr4	128527462	128527463	chr4:128527463:G:A	rs143211813	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr4	128638317	128638318	chr4:128638318:G:A	rs1216351	G	A	A	Sox3.mouse_HMG_3	16	1	-	3.387798851539699	4.254725591011978	GATGAAAGTTATTCCTC
chr4	128660835	128660836	chr4:128660836:G:A	rs76655811	G	A	G	Sox3.mouse_HMG_3	13	1	-	9.399738427666826	2.792477817204804	GATGAATATTAGTCATT
chr4	129139074	129139075	chr4:129139075:A:G	rs11946237	A	G	G	Sox3.mouse_HMG_3	2	1	-	7.298154015533217	0.6922748973022848	GATGAACGATATTCACA
chr4	129153948	129153949	chr4:129153949:A:G	rs11933725	A	G	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr4	129549978	129549979	chr4:129549979:G:C	rs12648417	G	C	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr4	129604732	129604733	chr4:129604733:A:G	rs62309525	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr4	129616070	129616071	chr4:129616071:C:T	rs610734	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr4	129671701	129671702	chr4:129671702:G:T	rs17050588	G	T	T	Sox3.mouse_HMG_3	13	1	+	6.642033510279411	6.642033510279411	CTTGAATTCCATTGATA
chr4	129734517	129734518	chr4:129734518:T:C	rs10020857	T	C	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr4	129944158	129944159	chr4:129944159:G:A	rs186178905	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr4	130053822	130053823	chr4:130053823:A:C	rs11729475	A	C	A	Sox3.mouse_HMG_3	16	1	-	4.605248833336075	5.792178349541097	TCTCAATTGCAGTCATT
chr4	130223694	130223695	chr4:130223695:T:C	rs35850570	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr4	130396414	130396415	chr4:130396415:A:G	rs1509434	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr4	130602365	130602366	chr4:130602366:A:G	rs74846031	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr4	131514507	131514508	chr4:131514508:G:C	rs55733408	G	C	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr4	131555170	131555171	chr4:131555171:G:T	rs116371452	G	T	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr4	131590186	131590187	chr4:131590187:C:A	rs6858325	C	A	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr4	131645480	131645481	chr4:131645481:G:A	rs34192276	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr4	132108947	132108948	chr4:132108948:G:C	rs75232366	G	C	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	132108948	132108949	chr4:132108949:T:A	rs10010474	T	A	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr4	132108958	132108959	chr4:132108959:G:A	rs541911541	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr4	132594013	132594014	chr4:132594014:A:T	rs72682559	A	T	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr4	133128805	133128806	chr4:133128806:C:G	rs2419947	C	G	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr4	133556725	133556726	chr4:133556726:G:T	rs1389332	G	T	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr4	133643058	133643059	chr4:133643059:G:A	rs1354857	G	A	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr4	134148302	134148303	chr4:134148303:T:C	rs73859881	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	134623246	134623247	chr4:134623247:T:C	rs11945519	T	C	t	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr4	134658107	134658108	chr4:134658108:G:A	rs28773473	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr4	134749278	134749279	chr4:134749279:C:A	rs61103193	C	A	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr4	134816911	134816912	chr4:134816912:G:A	rs13434583	G	A	G	Sox3.mouse_HMG_3	9	1	-	5.486061826936982	5.493698503928728	ACTTAATGCCAGTCATG
chr4	134816926	134816927	chr4:134816927:C:T	rs62314823	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr4	134859216	134859217	chr4:134859217:T:G	rs10029269	T	G	T	Sox3.mouse_HMG_3	14	1	-	4.116846882814042	-2.2650992836128694	TATGACTGATAGCCATA
chr4	135460051	135460052	chr4:135460052:C:T	rs12646042	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr4	135594434	135594435	chr4:135594435:C:T	rs1842261	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr4	135674195	135674196	chr4:135674196:C:G	rs77090745	C	G	-	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr4	135714874	135714875	chr4:135714875:C:A	rs112927385	C	A	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr4	135735277	135735278	chr4:135735278:G:T	rs11736828	G	T	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr4	136450435	136450436	chr4:136450436:T:C	rs62309713	T	C	T	Sox3.mouse_HMG_3	7	1	+	1.724108932747525	-3.679302247229793	TTTGAAATACAATCATG
chr4	136490479	136490480	chr4:136490480:T:C	rs77493841	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr4	136591571	136591572	chr4:136591572:C:A	rs11099398	C	A	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr4	136603323	136603324	chr4:136603324:C:A	rs4304024	C	A	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	137129870	137129871	chr4:137129871:T:A	rs60836162	T	A	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr4	137648683	137648684	chr4:137648684:G:A	rs13152713	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	137739665	137739666	chr4:137739666:G:A	rs144743514	G	A	G	Sox3.mouse_HMG_3	16	1	+	2.181532790364499	2.1455923339119733	GCAGAATGCTTTTCATG
chr4	137830857	137830858	chr4:137830858:C:T	rs141968519	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr4	137952397	137952398	chr4:137952398:T:C	rs6851757	T	C	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr4	138176185	138176186	chr4:138176186:C:T	rs11728401	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr4	138400703	138400704	chr4:138400704:C:T	rs17050355	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr4	138400929	138400930	chr4:138400930:A:G	rs17050357	A	G	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr4	138562942	138562943	chr4:138562943:T:C	rs2872734	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr4	138686613	138686614	chr4:138686614:A:T	rs139277772	A	T	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr4	138736011	138736012	chr4:138736012:T:C	rs1291936268	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr4	138772513	138772514	chr4:138772514:G:T	rs28726321	G	T	G	Sox3.mouse_HMG_3	9	1	-	1.5001903090978936	-4.554028315410424	GATGACTGGCAGTGAGG
chr4	138827195	138827196	chr4:138827196:T:C	rs62322115	T	C	T	Sox3.mouse_HMG_3	7	1	+	4.548045031542656	-0.8553661484346609	GATGAATTTCTTTCCTA
chr4	138842894	138842895	chr4:138842895:T:C	rs6854489	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr4	138954159	138954160	chr4:138954160:C:G	rs909941895	C	G	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	139212835	139212836	chr4:139212836:C:G	rs13127042	C	G	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr4	139314398	139314399	chr4:139314399:A:G	rs67332629	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr4	139540386	139540387	chr4:139540387:G:A	rs62321266	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr4	139559623	139559624	chr4:139559624:T:C	rs6846949	T	C	T	Sox3.mouse_HMG_3	11	1	+	5.705781978291938	-0.37882884781000603	AGTTAATTTTATTCATT
chr4	139625326	139625327	chr4:139625327:C:A	rs10018489	C	A	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr4	139815825	139815826	chr4:139815826:A:G	rs10015851	A	G	A	Sox3.mouse_HMG_3	9	1	-	8.35020181933481	8.342565142343062	GATGAATTGTAGGCAAG
chr4	139914142	139914143	chr4:139914143:A:G	rs17370238	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr4	139989809	139989810	chr4:139989810:G:A	rs7696858	G	A	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr4	140048238	140048239	chr4:140048239:A:G	rs67285285	A	G	A	Sox3.mouse_HMG_3	11	1	-	10.04996965407834	3.965358827976394	AAAGAATGATATTCATC
chr4	140083382	140083383	chr4:140083383:A:C	rs140413966	A	C	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr4	140238081	140238082	chr4:140238082:T:G	rs17005652	T	G	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr4	140310842	140310843	chr4:140310843:G:C	rs1512172	G	C	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr4	140636786	140636787	chr4:140636787:T:C	rs78282365	T	C	T	Sox3.mouse_HMG_3	16	1	+	2.23084419273688	1.3639174532646012	GATGAATGAGAGCCAAT
chr4	140647657	140647658	chr4:140647658:C:T	rs12108355	C	T	C	Sox3.mouse_HMG_3	7	1	-	1.1305613068001599	-5.422987407857568	TTTGAATGTCAGGCTTG
chr4	140647665	140647666	chr4:140647666:G:A	rs76270430	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr4	140689018	140689019	chr4:140689019:T:C	rs4956475	T	C	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr4	140735190	140735191	chr4:140735191:T:C	rs12500421	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr4	140949493	140949494	chr4:140949494:G:A	rs4956494	G	A	A	Sox3.mouse_HMG_3	11	1	+	4.5579253082677855	-0.09224941753835258	TATGAATGCTAGCAATG
chr4	140965120	140965121	chr4:140965121:T:C	rs12499713	T	C	T	Sox3.mouse_HMG_3	6	1	+	6.052409192125137	-0.555541449415662	CATGAATGCTTTTCAGT
chr4	141059262	141059263	chr4:141059263:G:T	rs115034222	G	T	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr4	141079779	141079780	chr4:141079780:T:G	rs9884757	T	G	T	Sox3.mouse_HMG_3	12	1	-	3.7765324800608555	3.696489772387319	CATAAATGCCAGACATG
chr4	141260393	141260394	chr4:141260394:C:A	rs1583440	C	A	A	Sox3.mouse_HMG_3	12	1	-	1.9092880076676662	8.290362853989578	TATGAATTGTAGGCTTC
chr4	141899923	141899924	chr4:141899924:G:T	rs6842837	G	T	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr4	142065300	142065301	chr4:142065301:C:T	rs189211	C	T	T	Sox3.mouse_HMG_3	16	1	+	4.117492772850989	4.984419512323268	AAAGAATGCTATACATC
chr4	142096072	142096073	chr4:142096073:T:C	rs336301	T	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr4	142168348	142168349	chr4:142168349:G:T	rs6816247	G	T	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr4	142302190	142302191	chr4:142302191:A:G	rs3775689	A	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr4	142302221	142302222	chr4:142302222:T:C	rs3822151	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr4	142314567	142314568	chr4:142314568:T:C	rs11945996	T	C	t	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr4	142347731	142347732	chr4:142347732:A:G	rs1994555	A	G	G	Sox3.mouse_HMG_3	12	1	-	2.793053836791467	-3.3997997306093	CATGAATGCTTTTCTTT
chr4	143203118	143203119	chr4:143203119:G:T	rs75729676	G	T	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr4	143203124	143203125	chr4:143203125:T:C	rs7435424	T	C	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr4	143263039	143263040	chr4:143263040:C:T	rs300925	C	T	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr4	143296812	143296813	chr4:143296813:T:A	rs76830746	T	A	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr4	143296837	143296838	chr4:143296838:T:C	rs17017571	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	143532346	143532347	chr4:143532347:T:C	rs7698480	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr4	143726892	143726893	chr4:143726893:T:G	rs1375989	T	G	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr4	143854709	143854710	chr4:143854710:G:A	rs62337340	G	A	.	Sox3.mouse_HMG_3	1	1	+	3.5098953021428043	6.610025238580096	CGTGAATGGCAGGCAGG
chr4	143979065	143979066	chr4:143979066:G:A	rs4835470	G	A	g	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr4	143986488	143986489	chr4:143986489:T:C	rs6537231	T	C	c	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	144178412	144178413	chr4:144178413:G:A	rs10015396	G	A	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr4	144178430	144178431	chr4:144178431:C:T	rs72729545	C	T	C	Sox3.mouse_HMG_3	3	1	-	1.9826014697831253	-3.798963417746104	ATTGCAAGGTATTCATG
chr4	144852360	144852361	chr4:144852361:A:G	rs4408979	A	G	A	Sox3.mouse_HMG_3	15	1	-	2.780164309191499	-1.9342291025235694	CATGGATCTTAGTCATG
chr4	145320683	145320684	chr4:145320684:A:C	rs13105189	A	C	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr4	145437119	145437120	chr4:145437120:C:T	rs472730	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	145502245	145502246	chr4:145502246:A:G	rs17020248	A	G	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr4	145614140	145614141	chr4:145614141:T:C	rs7689024	T	C	T	Sox3.mouse_HMG_3	6	1	+	2.1065877195096694	-4.501362922031128	AATGAATTTTTGTTATG
chr4	145710124	145710125	chr4:145710125:C:A	rs113976546	C	A	C	Sox3.mouse_HMG_3	13	1	+	3.5098934663081387	-2.872743207669238	AATGTATTTGAGTCATG
chr4	145879601	145879602	chr4:145879602:C:T	rs570678742	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr4	145887384	145887385	chr4:145887385:A:C	chr4:145887385:A:C	A	C	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr4	147057687	147057688	chr4:147057688:G:A	rs137958905	G	A	G	Sox3.mouse_HMG_3	8	1	+	1.190865628342603	0.5677489811647898	TATGAAAGGTCTTCAAC
chr4	147078668	147078669	chr4:147078669:A:T	rs6856928	A	T	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr4	147341191	147341192	chr4:147341192:C:T	rs2562880	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	147388198	147388199	chr4:147388199:G:A	rs150075382	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr4	147388216	147388217	chr4:147388217:A:C	rs13140736	A	C	A	Sox3.mouse_HMG_3	11	1	-	12.182313157937397	10.747877057641588	CATGAATGATATTCACA
chr4	147430206	147430207	chr4:147430207:G:A	rs11722693	G	A	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr4	147527717	147527718	chr4:147527718:A:G	rs4639051	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr4	147809489	147809490	chr4:147809490:A:T	rs4835456	A	T	A	Sox3.mouse_HMG_3	2	1	-	5.146302570013861	-0.5810261443257629	GTTGAATTGCAGTGAAG
chr4	148049009	148049010	chr4:148049010:A:T	rs35038176	A	T	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr4	148086340	148086341	chr4:148086341:T:C	rs6832062	T	C	C	Sox3.mouse_HMG_3	10	1	-	2.7964781502123346	-3.8114724913284626	AATGGATTACATTTATT
chr4	148348483	148348484	chr4:148348484:C:T	rs992556	C	T	C	Sox3.mouse_HMG_3	2	1	+	2.6438977140462905	9.24977683227722	CACGAAATTTATTCATG
chr4	148737522	148737523	chr4:148737523:G:C	rs10002630	G	C	C	Sox3.mouse_HMG_3	7	1	+	1.547268736695796	-4.706175385511595	TGAGAAAGCCAGTCATG
chr4	148799966	148799967	chr4:148799967:T:C	rs12509344	T	C	C	Sox3.mouse_HMG_3	14	1	+	1.9375546029012947	1.9375546029012947	CATGAATGGCAGTGTTT
chr4	149897509	149897510	chr4:149897510:G:A	rs6852150	G	A	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr4	149910059	149910060	chr4:149910060:A:G	rs554444116	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	150059486	150059487	chr4:150059487:T:C	rs10014266	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr4	150236709	150236710	chr4:150236710:T:C	rs1459747	T	C	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr4	150283699	150283700	chr4:150283700:C:T	rs114767081	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	150346098	150346099	chr4:150346099:C:T	rs4696299	C	T	c	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr4	150363814	150363815	chr4:150363815:T:C	rs17504324	T	C	t	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	150363829	150363830	chr4:150363830:G:A	rs7657948	G	A	a	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr4	150679647	150679648	chr4:150679648:G:C	chr4:150679648:G:C	G	C	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr4	150680931	150680932	chr4:150680932:C:T	rs4336207	C	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr4	150875531	150875532	chr4:150875532:C:T	rs115786319	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr4	150938521	150938522	chr4:150938522:T:C	rs1201198	T	C	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr4	150986306	150986307	chr4:150986307:G:A	rs772926105	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	151226288	151226289	chr4:151226289:G:A	rs10520102	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr4	151470077	151470078	chr4:151470078:T:C	rs9994482	T	C	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr4	151574165	151574166	chr4:151574166:C:T	rs61653326	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr4	152460942	152460943	chr4:152460943:T:G	rs78745268	T	G	T	Sox3.mouse_HMG_3	7	1	+	2.680686222461923	3.5307191646919933	GATGACTTTTATTAATC
chr4	152663479	152663480	chr4:152663480:G:C	rs6855314	G	C	G	Sox3.mouse_HMG_3	11	1	+	0.6305315396924025	-4.019643186113736	TGTGAAGGTCAGTCTTG
chr4	152982963	152982964	chr4:152982964:T:C	rs59757285	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr4	152993655	152993656	chr4:152993656:C:T	rs35159935	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr4	152993658	152993659	chr4:152993659:G:A	rs58019250	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr4	152999426	152999427	chr4:152999427:G:A	rs12504106	G	A	G	Sox3.mouse_HMG_3	9	1	-	1.5193754794799663	1.5270121564717123	GCTGAGTGTCATTCCTG
chr4	152999455	152999456	chr4:152999456:C:T	rs12054542	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr4	153074895	153074896	chr4:153074896:T:C	rs35730774	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr4	153101359	153101360	chr4:153101360:T:G	rs4696413	T	G	T	Sox3.mouse_HMG_3	2	1	+	3.6142683008812817	-3.134711660990323	AATAAAGGGCATTCAAA
chr4	153119446	153119447	chr4:153119447:C:T	rs186926385	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr4	153144060	153144061	chr4:153144061:G:A	rs11726660	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr4	153144087	153144088	chr4:153144088:A:C	rs11734829	A	C	C	Sox3.mouse_HMG_3	2	1	-	0.3384865683037799	-6.410493393567824	GATGGAGGACATTCAGC
chr4	153180177	153180178	chr4:153180178:C:T	rs12509529	C	T	T	Sox3.mouse_HMG_3	9	1	+	1.974300038154255	1.981936715146002	AATGATTTGCCTTCAAG
chr4	153219257	153219258	chr4:153219258:T:G	rs28484806	T	G	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr4	153222700	153222701	chr4:153222701:C:T	rs533123973	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr4	153337943	153337944	chr4:153337944:G:C	rs76036887	G	C	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr4	153337984	153337985	chr4:153337985:T:C	rs9631758	T	C	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	153342923	153342924	chr4:153342924:A:G	rs11942354	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	153345710	153345711	chr4:153345711:A:T	rs939574903	A	T	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr4	153438584	153438585	chr4:153438585:T:C	rs17029999	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr4	153465270	153465271	chr4:153465271:C:G	rs6850866	C	G	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr4	153505426	153505427	chr4:153505427:G:A	rs6535918	G	A	A	Sox3.mouse_HMG_3	2	1	+	2.5031710809991194	3.5248223285311004	CAGGGATGCCAGTCATA
chr4	153518966	153518967	chr4:153518967:C:T	rs114696175	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr4	153519998	153519999	chr4:153519999:T:C	rs34536783	T	C	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr4	153519998	153519999	chr4:153519999:T:G	chr4:153519999:T:G	T	G	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr4	153523323	153523324	chr4:153523324:G:C	rs17030067	G	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	153524445	153524446	chr4:153524446:T:C	rs12500924	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr4	153524454	153524455	chr4:153524455:A:G	rs79860579	A	G	A	Sox3.mouse_HMG_3	15	1	-	2.643547114141791	-2.0708462975732775	AAACAATGTCAGTCATT
chr4	153536106	153536107	chr4:153536107:G:A	rs991431615	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr4	153549602	153549603	chr4:153549603:G:C	rs9994000	G	C	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr4	153549606	153549607	chr4:153549607:A:G	rs10016276	A	G	A	Sox3.mouse_HMG_3	1	1	+	5.28040461766748	2.1802746812301885	TATGATTGTTATTCTTA
chr4	153905255	153905256	chr4:153905256:C:T	rs7667041	C	T	C	Sox3.mouse_HMG_3	5	1	-	1.5444457740544792	8.033280696125344	CATGAGTTACAGTGATG
chr4	153988315	153988316	chr4:153988316:A:G	rs62332124	A	G	A	Sox3.mouse_HMG_3	14	1	+	1.542568036242677	-4.839378130184233	AATGTATGATAGCCATC
chr4	154037167	154037168	chr4:154037168:A:G	rs11947566	A	G	G	Sox3.mouse_HMG_3	5	1	+	1.744130441377476	-4.744704480693389	GCTGAATGACAATTATA
chr4	154079040	154079041	chr4:154079041:A:G	rs75103276	A	G	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr4	154084383	154084384	chr4:154084384:C:G	rs2404912	C	G	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr4	154467847	154467848	chr4:154467848:A:C	rs56137436	A	C	A	Sox3.mouse_HMG_3	5	1	+	5.301511316604246	-1.3059293478744642	GCAGAATGATATTCAAT
chr4	154872388	154872389	chr4:154872389:G:A	rs2133808	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr4	155419388	155419389	chr4:155419389:G:A	chr4:155419389:G:A	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr4	155536279	155536280	chr4:155536280:C:T	rs72968309	C	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr4	155629278	155629279	chr4:155629279:G:T	rs62328640	G	T	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	155631373	155631374	chr4:155631374:G:A	rs11941811	G	A	A	Sox3.mouse_HMG_3	13	1	-	4.578690507220973	-2.0285701032410466	GATTATTGGTATTCATT
chr4	155648048	155648049	chr4:155648049:G:A	rs2062175	G	A	G	Sox3.mouse_HMG_3	9	1	-	3.9218299983362654	3.929466675328013	TTTGAATTGCAATCAGC
chr4	155982459	155982460	chr4:155982460:G:T	rs4691200	G	T	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr4	156085914	156085915	chr4:156085915:C:T	rs11100042	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr4	156109457	156109458	chr4:156109458:A:G	rs11737334	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	156136480	156136481	chr4:156136481:C:T	rs12512018	C	T	C	Sox3.mouse_HMG_3	7	1	-	1.2627188398677751	-5.290829874789953	GTTGAATGATAGTTCTG
chr4	156173695	156173696	chr4:156173696:C:T	rs11100050	C	T	T	Sox3.mouse_HMG_3	5	1	-	1.1558771527217921	7.644712074792657	GCTGAGTTGTGTTCATG
chr4	156245912	156245913	chr4:156245913:G:C	rs13123051	G	C	G	Sox3.mouse_HMG_3	15	1	+	6.5484508482966675	4.956648247674841	AATGAATGTTGGTCAGA
chr4	156420920	156420921	chr4:156420921:A:G	rs10517637	A	G	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr4	156481369	156481370	chr4:156481370:T:C	rs1490568	T	C	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr4	156583507	156583508	chr4:156583508:T:C	rs68191523	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	156629028	156629029	chr4:156629029:C:A	rs17316908	C	A	C	Sox3.mouse_HMG_3	5	1	+	0.6465307823348712	7.253971446813583	AATGACTGCCAGCCAGG
chr4	156629057	156629058	chr4:156629058:C:T	rs115346770	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr4	156629059	156629060	chr4:156629060:A:G	rs1521725	A	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr4	156673096	156673097	chr4:156673097:C:G	rs10517640	C	G	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr4	156677029	156677030	chr4:156677030:T:C	rs939691	T	C	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr4	156791324	156791325	chr4:156791325:C:T	rs10030455	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	156886605	156886606	chr4:156886606:C:T	rs114193077	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr4	157096574	157096575	chr4:157096575:A:G	rs75718387	A	G	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr4	157096616	157096617	chr4:157096617:T:G	rs940695745	T	G	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr4	157247394	157247395	chr4:157247395:G:A	rs10461267	G	A	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr4	157448277	157448278	chr4:157448278:G:A	rs6843849	G	A	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr4	157665009	157665010	chr4:157665010:C:T	rs2345335	C	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr4	157812852	157812853	chr4:157812853:C:G	rs115816321	C	G	C	Sox3.mouse_HMG_3	13	1	+	12.3346752689062	5.727414658444178	TTTGAATGGCAGTCAAG
chr4	158137811	158137812	chr4:158137812:A:C	rs7671501	A	C	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr4	158243487	158243488	chr4:158243488:G:A	rs3805144	G	A	G	Sox3.mouse_HMG_3	10	1	-	2.909609579592206	2.909609579592206	TATGATTGCTCTTCAAA
chr4	158938777	158938778	chr4:158938778:C:T	rs17037755	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr4	159051842	159051843	chr4:159051843:G:C	rs116757451	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr4	159195308	159195309	chr4:159195309:C:T	rs11939106	C	T	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr4	159281943	159281944	chr4:159281944:C:T	rs75566961	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr4	159396440	159396441	chr4:159396441:A:G	rs7697362	A	G	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr4	159562797	159562798	chr4:159562798:C:T	rs6823356	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr4	160202606	160202607	chr4:160202607:C:G	rs79025849	C	G	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr4	160247325	160247326	chr4:160247326:A:G	rs67618152	A	G	a	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr4	160251760	160251761	chr4:160251761:A:G	rs147104532	A	G	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr4	160315891	160315892	chr4:160315892:G:A	rs4364218	G	A	a	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr4	160407592	160407593	chr4:160407593:T:G	rs11729110	T	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr4	161291497	161291498	chr4:161291498:C:T	rs723537	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	161744401	161744402	chr4:161744402:T:A	rs17041437	T	A	T	Sox3.mouse_HMG_3	16	1	+	2.5530596804754393	3.7040487402279356	GTTGAATTATATTCTCT
chr4	161854263	161854264	chr4:161854264:G:A	rs1440585	G	A	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr4	161883420	161883421	chr4:161883421:A:G	rs1440591	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr4	161983296	161983297	chr4:161983297:C:T	rs10028812	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	162242029	162242030	chr4:162242030:T:G	rs74360194	T	G	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	162892357	162892358	chr4:162892358:C:A	rs75694467	C	A	C	Sox3.mouse_HMG_3	16	1	-	4.652486475872876	3.465556959667854	AATGAAAGCTGTTCATG
chr4	163382332	163382333	chr4:163382333:T:C	rs28507826	T	C	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr4	163681056	163681057	chr4:163681057:C:T	rs6826691	C	T	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr4	163816406	163816407	chr4:163816407:A:G	rs1353215	A	G	G	Sox3.mouse_HMG_3	15	1	+	4.411711252195886	3.5529299053394654	TATAAATAGTATTCAAG
chr4	164058491	164058492	chr4:164058492:T:C	rs6536786	T	C	T	Sox3.mouse_HMG_3	2	1	+	6.4287093680259515	-0.1771697502049785	GTTGCATGGCATTCAGG
chr4	164221924	164221925	chr4:164221925:C:T	rs150898009	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	164745478	164745479	chr4:164745479:A:G	rs28673641	A	G	g	Sox3.mouse_HMG_3	14	1	+	4.179935925595123	-2.202010240831788	TTTGTATTTTAGTCAAG
chr4	164749119	164749120	chr4:164749120:C:G	rs28587555	C	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr4	164770473	164770474	chr4:164770474:G:A	rs114533578	G	A	G	Sox3.mouse_HMG_3	8	1	+	2.1853933395847713	1.5622766924069582	TGGAAATGGCATTCATT
chr4	164934042	164934043	chr4:164934043:A:G	rs56411534	A	G	a	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr4	164951434	164951435	chr4:164951435:A:G	rs4541460	A	G	-	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr4	165190759	165190760	chr4:165190760:A:G	rs13110248	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr4	165203229	165203230	chr4:165203230:G:A	rs17172935	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr4	165258523	165258524	chr4:165258524:C:A	rs56058696	C	A	C	Sox3.mouse_HMG_3	13	1	-	2.458162316576527	2.458162316576527	GTAGAATTACATTGATA
chr4	165332772	165332773	chr4:165332773:G:C	rs3943705	G	C	G	Sox3.mouse_HMG_3	15	1	-	1.6913579528219862	3.283160553443813	GACAAATGCCATTCACA
chr4	165418171	165418172	chr4:165418172:G:A	rs13141616	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr4	165418208	165418209	chr4:165418209:C:T	rs10471062	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	166065041	166065042	chr4:166065042:G:A	rs6536942	G	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr4	166066870	166066871	chr4:166066871:A:T	rs7686255	A	T	A	Sox3.mouse_HMG_3	10	1	+	2.7609676891426096	-3.99008379603886	GATTTATGTTATTCAAA
chr4	166298189	166298190	chr4:166298190:A:G	rs57312560	A	G	A	Sox3.mouse_HMG_3	14	1	+	5.584843772682495	-0.7971023937444153	AAGGAATGGCATACATG
chr4	167053224	167053225	chr4:167053225:T:C	chr4:167053225:T:C	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr4	167934561	167934562	chr4:167934562:C:T	rs74477550	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr4	168361702	168361703	chr4:168361703:G:C	rs13118834	G	C	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	168408820	168408821	chr4:168408821:T:G	rs62334122	T	G	T	Sox3.mouse_HMG_3	0	1	+	1.6745950049686522	1.9435158587684058	TATGGATTGCAGTGATC
chr4	168454073	168454074	chr4:168454074:G:C	rs2712140	G	C	C	Sox3.mouse_HMG_3	3	1	+	1.2147869855089621	-5.534703750196086	GATGGGTGCTATTCACA
chr4	168511521	168511522	chr4:168511522:C:T	rs61051061	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr4	168604072	168604073	chr4:168604073:T:C	rs62335530	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr4	168605472	168605473	chr4:168605473:C:G	rs78582393	C	G	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	168605492	168605493	chr4:168605493:G:A	rs62335532	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr4	168735944	168735945	chr4:168735945:T:G	rs1500800	T	G	T	Sox3.mouse_HMG_3	15	1	-	5.157350424232056	2.7067664767538084	GTGGAATGTTAGTCAAG
chr4	168769188	168769189	chr4:168769189:A:G	rs78542922	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr4	168881413	168881414	chr4:168881414:C:A	rs184538527	C	A	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	168881414	168881415	chr4:168881415:G:A	rs1048164539	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr4	169044952	169044953	chr4:169044953:C:T	rs34478693	C	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr4	169056750	169056751	chr4:169056751:G:A	rs12498384	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr4	169313251	169313252	chr4:169313252:T:A	rs4692710	T	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr4	169315080	169315081	chr4:169315081:G:A	rs185478652	G	A	g	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr4	169315110	169315111	chr4:169315111:C:T	rs182780195	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	169384787	169384788	chr4:169384788:A:G	rs57077731	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.7119511177918625	-3.0024422939232056	GTAGGATTCCATTCATT
chr4	169657850	169657851	chr4:169657851:C:A	rs17627811	C	A	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr4	169943831	169943832	chr4:169943832:G:A	rs11733764	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr4	170527556	170527557	chr4:170527557:T:C	rs4692842	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr4	170873035	170873036	chr4:170873036:C:T	rs1367998	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr4	171236164	171236165	chr4:171236165:T:C	rs10016739	T	C	C	Sox3.mouse_HMG_3	11	1	+	5.827351705504535	-0.2572591205974095	TAAGAATGTTCTTCATG
chr4	171236187	171236188	chr4:171236188:G:A	rs10024424	G	A	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr4	171641883	171641884	chr4:171641884:A:G	rs13151144	A	G	A	Sox3.mouse_HMG_3	7	1	-	2.5219227486247853	-2.8814884313525324	GAAGAATTCCATTGAGG
chr4	171880096	171880097	chr4:171880097:T:C	rs17057538	T	C	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr4	171928521	171928522	chr4:171928522:A:G	rs79106567	A	G	A	Sox3.mouse_HMG_3	5	1	+	2.8843227461517786	-3.6045121759190852	CATGAATCATGTTCATT
chr4	171982263	171982264	chr4:171982264:C:T	rs17057824	C	T	C	Sox3.mouse_HMG_3	7	1	-	8.220549560588418	1.6670008459306893	GGTGAATGATAGTCACT
chr4	172022705	172022706	chr4:172022706:A:T	rs7700075	A	T	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr4	172022739	172022740	chr4:172022740:G:A	rs17057887	G	A	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr4	172104926	172104927	chr4:172104927:T:C	rs2067512	T	C	C	Sox3.mouse_HMG_3	8	1	+	2.9217856852096107	3.1839054301257166	GATGAATTTCATAAAAA
chr4	172344842	172344843	chr4:172344843:G:A	rs28691833	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr4	172376412	172376413	chr4:172376413:G:A	rs73868985	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr4	172376445	172376446	chr4:172376446:G:A	rs79173293	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr4	172766735	172766736	chr4:172766736:T:G	rs7699455	T	G	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr4	173151603	173151604	chr4:173151604:G:A	rs7689781	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr4	173178470	173178471	chr4:173178471:G:A	rs36050097	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr4	173252558	173252559	chr4:173252559:C:G	chr4:173252559:C:G	C	G	C	Sox3.mouse_HMG_3	13	1	+	8.658448316110851	2.05118770564883	TTTGAATTACATTCACT
chr4	173302913	173302914	chr4:173302914:A:C	rs12186296	A	C	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr4	173346074	173346075	chr4:173346075:C:T	rs12640749	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr4	173491422	173491423	chr4:173491423:A:C	rs986557562	A	C	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	173626543	173626544	chr4:173626544:G:A	rs11946245	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr4	173781291	173781292	chr4:173781292:G:A	rs115950673	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr4	173793430	173793431	chr4:173793431:C:T	rs12508054	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	174604141	174604142	chr4:174604142:T:C	rs115393805	T	C	T	Sox3.mouse_HMG_3	0	1	+	2.203522289656624	0.7486516443197586	TTTGAAAGCTATTTATA
chr4	174650837	174650838	chr4:174650838:C:G	rs11934522	C	G	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr4	174682141	174682142	chr4:174682142:G:A	rs72706156	G	A	G	Sox3.mouse_HMG_3	8	1	+	6.236815935178098	5.6136992880002845	GTTTAATGGCATTCAGA
chr4	174749466	174749467	chr4:174749467:T:C	rs1485935	T	C	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr4	174764696	174764697	chr4:174764697:G:C	rs6813964	G	C	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr4	175325526	175325527	chr4:175325527:G:T	rs183211026	G	T	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr4	176237581	176237582	chr4:176237582:A:C	rs72706399	A	C	A	Sox3.mouse_HMG_3	10	1	+	4.424896943089413	-2.3261545420920573	ATTGAACTCTATTCAGA
chr4	176453920	176453921	chr4:176453921:A:G	rs4558817	A	G	A	Sox3.mouse_HMG_3	15	1	-	5.463999527201455	0.7496061154863871	GAAGATTTACATTCATG
chr4	176594382	176594383	chr4:176594383:T:C	rs17695394	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr4	176665807	176665808	chr4:176665808:T:C	rs6857881	T	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr4	176884292	176884293	chr4:176884293:G:A	rs74520285	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr4	176971839	176971840	chr4:176971840:G:A	rs76026178	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr4	176971862	176971863	chr4:176971863:A:T	rs74608970	A	T	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr4	177177788	177177789	chr4:177177789:G:A	rs142377765	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr4	177389611	177389612	chr4:177389612:T:G	rs13108563	T	G	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr4	177472266	177472267	chr4:177472267:G:A	rs114004116	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr4	177495386	177495387	chr4:177495387:C:T	rs28695903	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr4	177620753	177620754	chr4:177620754:C:T	rs6552248	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr4	177807820	177807821	chr4:177807821:G:A	rs11131824	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr4	177957969	177957970	chr4:177957970:G:C	rs6826177	G	C	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr4	178052999	178053000	chr4:178053000:T:C	rs1599604	T	C	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr4	178133774	178133775	chr4:178133775:A:G	rs77587531	A	G	A	Sox3.mouse_HMG_3	16	1	+	5.074392380788437	5.110332837240962	TTTGAATTGTAGTCCAA
chr4	178182146	178182147	chr4:178182147:G:A	rs13145748	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr4	178344368	178344369	chr4:178344369:G:A	rs6848351	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr4	178652346	178652347	chr4:178652347:C:G	rs4241740	C	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr4	179284581	179284582	chr4:179284582:T:C	rs17067323	T	C	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr4	179415959	179415960	chr4:179415960:C:A	rs1455659	C	A	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr4	179479743	179479744	chr4:179479744:G:T	rs79512302	G	T	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr4	179545336	179545337	chr4:179545337:G:A	rs62343170	G	A	G	Sox3.mouse_HMG_3	6	1	-	3.1944608838434183	9.802411525384215	AATGAACTGCATTGATT
chr4	180281998	180281999	chr4:180281999:G:A	rs17069057	G	A	G	Sox3.mouse_HMG_3	6	1	-	2.5588858109092936	9.166836452450088	TGTGAACGATAATCATA
chr4	180360337	180360338	chr4:180360338:G:A	rs62334834	G	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr4	180528201	180528202	chr4:180528202:G:A	rs11943526	G	A	G	Sox3.mouse_HMG_3	16	1	+	0.840819350328148	0.8048788938756224	TGTGAATCACCGTCATG
chr4	180636014	180636015	chr4:180636015:C:G	rs888911	C	G	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	180764940	180764941	chr4:180764941:T:G	rs3095895	T	G	T	Sox3.mouse_HMG_3	16	1	-	4.773162932897621	2.7552471336728455	AATAGATTACATTCATA
chr4	181278698	181278699	chr4:181278699:A:T	rs55830684	A	T	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr4	181287710	181287711	chr4:181287711:A:G	rs1454695	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr4	181431158	181431159	chr4:181431159:T:C	rs116027606	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr4	181461930	181461931	chr4:181461931:T:C	rs11132063	T	C	T	Sox3.mouse_HMG_3	6	1	+	6.299598641186243	-0.30835200035455335	ATTGAATGCCAGACATT
chr4	181468509	181468510	chr4:181468510:C:T	rs4861964	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr4	181861391	181861392	chr4:181861392:T:A	rs10520514	T	A	T	Sox3.mouse_HMG_3	4	1	-	2.105886603566085	-4.501554060912627	TCTGATTGGCATACATG
chr4	181885564	181885565	chr4:181885565:T:G	rs41463944	T	G	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr4	181968301	181968302	chr4:181968302:G:A	rs7671091	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr4	182142159	182142160	chr4:182142160:A:G	rs11132114	A	G	G	Sox3.mouse_HMG_3	15	1	-	4.02778253573663	-0.6866108759784382	GATGAATGATATCCCTC
chr4	182595567	182595568	chr4:182595568:G:T	rs1514480	G	T	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	183030431	183030432	chr4:183030432:T:C	rs747368	T	C	t	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr4	183119205	183119206	chr4:183119206:C:T	rs72691683	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr4	183143310	183143311	chr4:183143311:A:C	rs56038937	A	C	A	Sox3.mouse_HMG_3	5	1	+	6.555127614115629	-0.05231305036308109	TTTGCATTCCAGTCATG
chr4	183155066	183155067	chr4:183155067:G:T	rs6552642	G	T	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr4	183414152	183414153	chr4:183414153:T:C	rs4415002	T	C	C	Sox3.mouse_HMG_3	14	1	-	5.340194850780286	-1.0417513156466252	TGTAAATTCCAGTCATC
chr4	183596032	183596033	chr4:183596033:A:G	rs4568277	A	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr4	183660474	183660475	chr4:183660475:T:G	rs11132202	T	G	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr4	183660539	183660540	chr4:183660540:A:G	rs55807103	A	G	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr4	183867865	183867866	chr4:183867866:C:T	rs11946426	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr4	184026073	184026074	chr4:184026074:A:G	rs7692728	A	G	A	Sox3.mouse_HMG_3	2	1	-	1.0393420066493693	-5.56653711158156	CATGAACTGCCTTCAAA
chr4	184064855	184064856	chr4:184064856:C:T	rs6827220	C	T	T	Sox3.mouse_HMG_3	3	1	-	2.94336077103419	-2.8382041164950413	CAGGAATTACATTAATG
chr4	184326964	184326965	chr4:184326965:T:C	rs6828196	T	C	T	Sox3.mouse_HMG_3	0	1	+	1.91176755843129	0.4568969130944247	TGTGAATTTAATTCCTG
chr4	184327633	184327634	chr4:184327634:A:G	rs536630849	A	G	A	Sox3.mouse_HMG_3	4	1	-	5.9426486725381364	5.799547828897464	CATGTATTTTATTCAAT
chr4	184424935	184424936	chr4:184424936:A:G	rs10011243	A	G	G	Sox3.mouse_HMG_3	15	1	-	4.391751108844684	-0.3226423028703843	GATGAATGTCATGGATT
chr4	184432251	184432252	chr4:184432252:T:A	rs889132244	T	A	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr4	184432278	184432279	chr4:184432279:C:T	rs72703773	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	184434726	184434727	chr4:184434727:G:A	rs12643218	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr4	184443768	184443769	chr4:184443769:G:A	rs184840226	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr4	184970279	184970280	chr4:184970280:T:C	rs13108248	T	C	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr4	184980724	184980725	chr4:184980725:G:T	rs58635817	G	T	g	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr4	185004600	185004601	chr4:185004601:C:T	rs72706936	C	T	C	Sox3.mouse_HMG_3	16	1	-	1.251559944622443	1.2156194881699174	TGTGATTTCCTTTCATG
chr4	185118046	185118047	chr4:185118047:C:A	rs10026207	C	A	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr4	185142186	185142187	chr4:185142187:G:A	rs10024068	G	A	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr4	185195631	185195632	chr4:185195632:T:C	rs3108247	T	C	C	Sox3.mouse_HMG_3	4	1	-	3.5091683357021077	-2.873648392291961	CATGAGTTATACTCATG
chr4	185522948	185522949	chr4:185522949:C:T	rs3811825	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr4	185730958	185730959	chr4:185730959:T:C	rs767017012	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr4	185753101	185753102	chr4:185753102:T:C	rs1039233	T	C	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr4	185793041	185793042	chr4:185793042:C:T	rs62335688	C	T	c	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr4	185793065	185793066	chr4:185793066:A:G	rs56306516	A	G	A	Sox3.mouse_HMG_3	14	1	+	3.0321014458306843	-3.349844720596227	AATGAATGGTGGCCATT
chr4	185871899	185871900	chr4:185871900:T:C	rs2603723	T	C	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr4	185888750	185888751	chr4:185888751:G:A	rs9998012	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr4	185888792	185888793	chr4:185888793:T:C	rs4862587	T	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr4	186128280	186128281	chr4:186128281:G:A	rs1715067	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr4	186201149	186201150	chr4:186201150:C:T	rs3817184	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr4	186266997	186266998	chr4:186266998:A:C	rs3822057	A	C	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr4	186472989	186472990	chr4:186472990:T:C	rs77491810	T	C	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr4	186473003	186473004	chr4:186473004:A:G	rs75209726	A	G	A	Sox3.mouse_HMG_3	8	1	-	1.8115830934764834	2.073702838392589	GGTGAATTTACTTCATG
chr4	186725210	186725211	chr4:186725211:G:T	rs76458105	G	T	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr4	186915987	186915988	chr4:186915988:C:T	rs80300384	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr4	186926920	186926921	chr4:186926921:G:A	rs6829485	G	A	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	187042367	187042368	chr4:187042368:T:C	rs72703109	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr4	187109144	187109145	chr4:187109145:G:A	rs72713720	G	A	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr4	187135517	187135518	chr4:187135518:G:A	rs9995596	G	A	A	Sox3.mouse_HMG_3	7	1	+	2.814900513558796	-3.7386482010989317	AATCCATGTTAGTCATG
chr4	187289527	187289528	chr4:187289528:T:G	rs34007530	T	G	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr4	187289551	187289552	chr4:187289552:A:G	rs28567978	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr4	187364763	187364764	chr4:187364764:G:A	rs1531438	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr4	188078152	188078153	chr4:188078153:G:C	rs59533340	G	C	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr4	188325027	188325028	chr4:188325028:T:G	rs12501096	T	G	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr4	188450912	188450913	chr4:188450913:G:A	rs6850750	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr4	188458572	188458573	chr4:188458573:T:C	rs34235108	T	C	C	Sox3.mouse_HMG_3	11	1	+	2.28627808207849	-3.7983327440234547	ATTGAATGATATCCCTG
chr4	189129541	189129542	chr4:189129542:T:C	rs4623064	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr4	189129547	189129548	chr4:189129548:C:A	rs4618357	C	A	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr4	189200714	189200715	chr4:189200715:T:C	rs73025337	T	C	T	Sox3.mouse_HMG_3	6	1	+	4.079077239586048	-2.5288734019547503	GATTAATGACAGCCATA
chr4	189502970	189502971	chr4:189502971:C:A	rs28736290	C	A	c	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr4	189792979	189792980	chr4:189792980:T:G	chr4:189792980:T:G	T	G	T	Sox3.mouse_HMG_3	6	1	+	1.2083855866714617	-5.54266589851001	GGTGAGTGACAGGCATA
chr4	189875704	189875705	chr4:189875705:T:C	rs7699562	T	C	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr5	14756	14757	chr5:14757:T:A	rs28494547	T	A	.	Sox3.mouse_HMG_3	2	1	+	1.053164006347187	-4.674164707992434	TATGATTGCTATCCACG
chr5	14781	14782	chr5:14782:A:G	rs77276016	A	G	.	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr5	77857	77858	chr5:77858:G:A	rs73730598	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr5	199562	199563	chr5:199563:T:G	rs11741320	T	G	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr5	294489	294490	chr5:294490:A:G	rs10037273	A	G	g	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr5	591022	591023	chr5:591023:G:A	rs56328416	G	A	g	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr5	594871	594872	chr5:594872:A:C	rs72703078	A	C	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr5	999547	999548	chr5:999548:C:T	rs72705182	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr5	1268731	1268732	chr5:1268732:A:C	rs6899038	A	C	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr5	1287224	1287225	chr5:1287225:A:G	rs2736099	A	G	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr5	1778904	1778905	chr5:1778905:T:C	rs6881166	T	C	T	Sox3.mouse_HMG_3	1	1	-	4.503312446987638	1.4031825105503468	GACGAATGATAGACATG
chr5	1926966	1926967	chr5:1926967:G:C	rs6897356	G	C	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr5	2037493	2037494	chr5:2037494:C:T	rs11953998	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr5	2078528	2078529	chr5:2078529:G:A	rs72708664	G	A	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr5	2078554	2078555	chr5:2078555:T:C	rs72708665	T	C	C	Sox3.mouse_HMG_3	4	1	-	6.538227993956496	0.15541126596242794	TATGAACTTTATTCAGT
chr5	2078594	2078595	chr5:2078595:T:C	rs72708667	T	C	T	Sox3.mouse_HMG_3	1	1	-	7.854915147378256	4.754785210940963	TATGATTTGTAGTCAAG
chr5	2138055	2138056	chr5:2138056:C:A	rs13187481	C	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr5	2138059	2138060	chr5:2138060:G:C	rs13186322	G	C	G	Sox3.mouse_HMG_3	0	1	+	1.5375654920716606	-0.1862260070649563	GATGAATTGCATCCTGT
chr5	2377292	2377293	chr5:2377293:A:C	rs559207918	A	C	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr5	2377314	2377315	chr5:2377315:T:C	rs674289	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	2394739	2394740	chr5:2394740:T:C	rs316599	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr5	2517475	2517476	chr5:2517476:A:G	rs59789375	A	G	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr5	2640235	2640236	chr5:2640236:A:G	rs323652	A	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr5	2801440	2801441	chr5:2801441:C:G	rs7706770	C	G	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr5	2915628	2915629	chr5:2915629:G:T	rs36067542	G	T	G	Sox3.mouse_HMG_3	8	1	-	2.8513273295386545	2.6709933510387724	GATGAAATCTACTCAAA
chr5	3300985	3300986	chr5:3300986:C:T	rs3922573	C	T	T	Sox3.mouse_HMG_3	13	1	+	0.4766809152750071	-6.130579695187013	GGTGATTGCCATGCAAG
chr5	3315953	3315954	chr5:3315954:G:A	rs116270893	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	3604563	3604564	chr5:3604564:C:A	rs6867483	C	A	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr5	3607301	3607302	chr5:3607302:C:A	rs1664711	C	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr5	3687453	3687454	chr5:3687454:C:A	rs4866462	C	A	A	Sox3.mouse_HMG_3	7	1	-	1.1111547781992228	0.2611218359691515	TGTGAAAGTCAGTCACT
chr5	3858914	3858915	chr5:3858915:T:C	rs2967824	T	C	C	Sox3.mouse_HMG_3	9	1	+	6.939809661198619	6.932172984206873	GCTGAATTTTGTTCATG
chr5	3867207	3867208	chr5:3867208:G:A	rs6555236	G	A	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr5	3980207	3980208	chr5:3980208:T:C	rs74852359	T	C	T	Sox3.mouse_HMG_3	9	1	+	2.7822982924252777	2.7746616154335317	GAATAATGTTATTCAGA
chr5	4016750	4016751	chr5:4016751:T:A	rs570723	T	A	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr5	4533386	4533387	chr5:4533387:G:T	rs7733851	G	T	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr5	4636426	4636427	chr5:4636427:G:A	rs79754841	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr5	4662209	4662210	chr5:4662210:G:A	rs7447371	G	A	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr5	4666050	4666051	chr5:4666051:A:G	rs7726500	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	4666056	4666057	chr5:4666057:G:A	rs66559905	G	A	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	4721095	4721096	chr5:4721096:C:T	rs62343949	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	4737313	4737314	chr5:4737314:G:T	rs116416878	G	T	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr5	5122890	5122891	chr5:5122891:A:G	rs10036983	A	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr5	5221186	5221187	chr5:5221187:A:G	rs1560062	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr5	5357545	5357546	chr5:5357546:C:T	rs78232271	C	T	c	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr5	5361443	5361444	chr5:5361444:C:T	rs16875423	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr5	5365245	5365246	chr5:5365246:G:A	rs770525303	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr5	5420521	5420522	chr5:5420522:C:T	rs1366117	C	T	T	Sox3.mouse_HMG_3	3	1	-	2.0290271835356837	-3.752537703993548	TGTGAAAGTCATTCTTA
chr5	5883001	5883002	chr5:5883002:G:A	rs10512838	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr5	6248354	6248355	chr5:6248355:C:A	chr5:6248355:C:A	C	A	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	6349889	6349890	chr5:6349890:G:T	rs56085350	G	T	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr5	6530227	6530228	chr5:6530228:C:T	rs62330592	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr5	6598084	6598085	chr5:6598085:G:A	rs146172829	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr5	6598118	6598119	chr5:6598119:T:A	rs35380069	T	A	A	Sox3.mouse_HMG_3	15	1	+	4.188939828848577	1.925130364611756	AATAAATGACAGTAATA
chr5	6635685	6635686	chr5:6635686:T:G	rs500182	T	G	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr5	6635691	6635692	chr5:6635692:C:G	rs1560149	C	G	C	Sox3.mouse_HMG_3	15	1	-	1.5690573957382992	-0.022745204883527492	CATGAATGACACACAGA
chr5	6635725	6635726	chr5:6635726:A:G	rs500058	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr5	6642123	6642124	chr5:6642124:T:C	rs8192164	T	C	T	Sox3.mouse_HMG_3	10	1	-	2.998324523921237	-3.6096261176195594	AAAGAATTCTATTCTTC
chr5	6847983	6847984	chr5:6847984:C:G	rs888964705	C	G	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr5	6995239	6995240	chr5:6995240:C:T	rs76230695	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr5	7168312	7168313	chr5:7168313:A:G	rs556672544	A	G	A	Sox3.mouse_HMG_3	6	1	-	6.030620624901632	-0.5773300166391653	CCTGTATGTTATTCATA
chr5	7432549	7432550	chr5:7432550:T:C	rs7737816	T	C	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr5	7517304	7517305	chr5:7517305:T:G	rs10038196	T	G	T	Sox3.mouse_HMG_3	8	1	+	2.525052616123973	3.2299550297180106	GGGGAATGTCATCCATG
chr5	7563221	7563222	chr5:7563222:G:C	rs4451024	G	C	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr5	7563238	7563239	chr5:7563239:A:G	rs4521443	A	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr5	7779933	7779934	chr5:7779934:C:T	rs74488857	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr5	8139603	8139604	chr5:8139604:G:T	rs336148	G	T	G	Sox3.mouse_HMG_3	12	1	+	1.6024401882998813	7.983515034621791	AATTAATTCCATGCAAG
chr5	8151388	8151389	chr5:8151389:T:C	rs10045169	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr5	8292070	8292071	chr5:8292071:C:A	rs13184953	C	A	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr5	8314959	8314960	chr5:8314960:A:G	rs11948658	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	8919665	8919666	chr5:8919666:A:G	rs12519046	A	G	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	9131889	9131890	chr5:9131890:A:G	rs17238371	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr5	9152475	9152476	chr5:9152476:A:G	rs10055926	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr5	9213087	9213088	chr5:9213088:G:A	rs40676	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr5	9440685	9440686	chr5:9440686:A:G	rs117543215	A	G	A	Sox3.mouse_HMG_3	5	1	-	3.170889786169882	3.170889786169882	TATAATTGGTATTCAAT
chr5	9646899	9646900	chr5:9646900:A:C	rs2106687	A	C	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr5	9963181	9963182	chr5:9963182:T:C	rs7734975	T	C	T	Sox3.mouse_HMG_3	5	1	-	3.9286010743890643	-2.5602338476818005	GCTGAATTCCCTTCAGG
chr5	10070647	10070648	chr5:10070648:C:T	rs1876153	C	T	T	Sox3.mouse_HMG_3	9	1	+	1.4035999920931652	1.411236669084913	GATGAATGGCACTTAGC
chr5	10123244	10123245	chr5:10123245:T:C	rs77644055	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr5	10213078	10213079	chr5:10213079:C:T	rs6868531	C	T	C	Sox3.mouse_HMG_3	3	1	-	2.6691241361055402	-3.1124407514236907	GATGAAGGACAGTGATT
chr5	10548503	10548504	chr5:10548504:A:T	rs12515831	A	T	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr5	10605458	10605459	chr5:10605459:T:C	rs10055045	T	C	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr5	10654205	10654206	chr5:10654206:G:A	rs147665923	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr5	10672526	10672527	chr5:10672527:G:A	rs185680270	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr5	10683806	10683807	chr5:10683807:G:A	rs5745288	G	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr5	10690636	10690637	chr5:10690637:T:G	rs5745271	T	G	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	10789167	10789168	chr5:10789168:G:A	rs13159508	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr5	10789181	10789182	chr5:10789182:C:T	rs116603609	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr5	10854493	10854494	chr5:10854494:T:C	rs11742561	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.7425499090736882	-0.3575800273636023	CATGATTTTCATTTATA
chr5	11104557	11104558	chr5:11104558:G:T	rs739955	G	T	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr5	11235196	11235197	chr5:11235197:T:C	rs740471	T	C	T	Sox3.mouse_HMG_3	15	1	+	4.094498681688317	-0.619894730026751	AATGAAATGCTTTCATG
chr5	11361953	11361954	chr5:11361954:G:A	rs58801460	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	11453333	11453334	chr5:11453334:C:T	rs61760267	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr5	11709298	11709299	chr5:11709299:C:T	rs116195138	C	T	C	Sox3.mouse_HMG_3	13	1	+	5.028972655018169	-1.5782879554438507	GATGAAAGTCTTTCATA
chr5	11786271	11786272	chr5:11786272:A:C	rs28602675	A	C	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr5	11851934	11851935	chr5:11851935:C:T	rs4499830	C	T	T	Sox3.mouse_HMG_3	9	1	+	2.699810862211147	2.707447539202893	TATAATTTCCAGTCATT
chr5	11956744	11956745	chr5:11956745:C:T	rs55685445	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	12176372	12176373	chr5:12176373:A:T	rs32285	A	T	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr5	12575069	12575070	chr5:12575070:A:G	rs6554726	A	G	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr5	12833788	12833789	chr5:12833789:T:G	rs4631175	T	G	t	Sox3.mouse_HMG_3	6	1	+	3.4242816513008054	-3.3267698338806646	CCTGAATTCTGTTCATC
chr5	12865547	12865548	chr5:12865548:G:A	rs4557406	G	A	G	Sox3.mouse_HMG_3	8	1	-	1.1436834486468976	0.8815637037307917	GGTGAATGCCAGTAACC
chr5	13568016	13568017	chr5:13568017:C:T	rs59364960	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr5	13988226	13988227	chr5:13988227:T:C	rs57632565	T	C	T	Sox3.mouse_HMG_3	4	1	-	3.1295987533053724	-3.253217974688697	TACGATTTACATTCATT
chr5	14048495	14048496	chr5:14048496:A:G	rs339956	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.5181116605221174	-5.089838981018679	GTGGAATGGTGGTCATG
chr5	14190810	14190811	chr5:14190811:A:G	rs28030	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	14306667	14306668	chr5:14306668:A:C	rs73059509	A	C	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	14326257	14326258	chr5:14326258:G:A	rs112149892	G	A	A	Sox3.mouse_HMG_3	10	1	+	1.8871951767368265	8.495145818277624	GATGATTGCTGGTCAAA
chr5	14341159	14341160	chr5:14341160:T:G	rs139023965	T	G	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr5	14413458	14413459	chr5:14413459:C:T	rs30610	C	T	C	Sox3.mouse_HMG_3	0	1	-	1.7806735451579068	0.955389644011563	GCTGAATGCCTATCATA
chr5	14415973	14415974	chr5:14415974:C:T	rs1169361342	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr5	14417819	14417820	chr5:14417820:A:G	rs42404	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr5	14471556	14471557	chr5:14471557:T:A	rs27091	T	A	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr5	14487172	14487173	chr5:14487173:T:C	rs75624251	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr5	14666272	14666273	chr5:14666273:A:G	rs77409750	A	G	A	Sox3.mouse_HMG_3	15	1	-	2.7784816471177036	-1.9359117645973645	TCTGAATGAGAATCATG
chr5	14942473	14942474	chr5:14942474:G:T	chr5:14942474:G:T	G	T	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	15324649	15324650	chr5:15324650:G:C	rs4499832	G	C	.	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr5	15363203	15363204	chr5:15363204:G:A	rs16903856	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr5	15416367	15416368	chr5:15416368:A:G	rs10475063	A	G	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr5	16468054	16468055	chr5:16468055:G:A	rs58042035	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr5	16642120	16642121	chr5:16642121:T:C	rs11743295	T	C	t	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr5	16741116	16741117	chr5:16741117:G:C	rs25894	G	C	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr5	16742471	16742472	chr5:16742472:T:C	rs140851293	T	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr5	17012579	17012580	chr5:17012580:A:G	rs4701675	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr5	17109839	17109840	chr5:17109840:G:A	rs615665	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr5	17197013	17197014	chr5:17197014:C:G	rs2929716	C	G	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr5	17213097	17213098	chr5:17213098:C:G	rs2929709	C	G	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	17223058	17223059	chr5:17223059:C:T	rs60587781	C	T	C	Sox3.mouse_HMG_3	11	1	-	2.586385231469138	-2.0637894943370005	AATGAAGTCCAGTCCTG
chr5	17326968	17326969	chr5:17326969:C:T	rs28718406	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr5	17365428	17365429	chr5:17365429:C:T	rs9312951	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr5	17402640	17402641	chr5:17402641:C:T	rs568577906	C	T	c	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	17453965	17453966	chr5:17453966:C:T	rs2459827	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr5	17727583	17727584	chr5:17727584:C:T	rs6872318	C	T	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr5	17793187	17793188	chr5:17793188:G:A	rs9292838	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr5	17852366	17852367	chr5:17852367:T:C	rs62349569	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr5	17878574	17878575	chr5:17878575:T:C	rs4095551	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr5	18102470	18102471	chr5:18102471:A:C	rs78269841	A	C	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr5	18274749	18274750	chr5:18274750:G:A	rs12516489	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr5	18698921	18698922	chr5:18698922:A:G	rs28375793	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr5	19986234	19986235	chr5:19986235:T:C	rs75561095	T	C	T	Sox3.mouse_HMG_3	12	1	-	3.103027122259604	2.8347631356649243	AATGAAGTCCATACATT
chr5	20028688	20028689	chr5:20028689:T:C	rs4292450	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr5	20166878	20166879	chr5:20166879:C:T	rs2388129	C	T	C	Sox3.mouse_HMG_3	8	1	+	2.607044809758195	2.344925064842089	AATGAATGCCCTTCTAG
chr5	20166903	20166904	chr5:20166904:A:T	rs2892440	A	T	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr5	20467476	20467477	chr5:20467477:G:C	rs10043943	G	C	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr5	21016994	21016995	chr5:21016995:G:C	rs17239328	G	C	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr5	21319583	21319584	chr5:21319584:C:T	rs10941887	C	T	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr5	21751946	21751947	chr5:21751947:A:G	rs6451993	A	G	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr5	22166394	22166395	chr5:22166395:A:G	rs4701274	A	G	A	Sox3.mouse_HMG_3	1	1	-	5.320128723460445	4.1133460177936465	ATTGACTTCTATTCAAG
chr5	22521761	22521762	chr5:22521762:G:A	rs9293021	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	22560175	22560176	chr5:22560176:A:C	rs115200211	A	C	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr5	22596603	22596604	chr5:22596604:A:G	rs17354991	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.041312477652723	-1.0588174587845685	CATGACTGGTATTTAAA
chr5	22664320	22664321	chr5:22664321:A:G	rs6882492	A	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr5	23589409	23589410	chr5:23589410:C:A	rs1080851	C	A	C	Sox3.mouse_HMG_3	13	1	+	3.365776942762002	-3.0168597312153747	GATGATTGAAAGTCATT
chr5	23728271	23728272	chr5:23728272:T:A	rs6861302	T	A	A	Sox3.mouse_HMG_3	11	1	+	2.952718674887265	-3.1318921512146805	CCTGTATTTTATTCAAG
chr5	23764833	23764834	chr5:23764834:A:G	rs554554553	A	G	A	Sox3.mouse_HMG_3	2	1	-	2.6834302911286247	-3.922448827102304	TATGTAGGTTATTCAAG
chr5	24154951	24154952	chr5:24154952:A:G	rs2115122	A	G	G	Sox3.mouse_HMG_3	0	1	+	3.3313424488731735	4.156626350019519	ATAGAATGGCATTCCTA
chr5	24154982	24154983	chr5:24154983:C:A	rs13361951	C	A	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr5	24481125	24481126	chr5:24481126:C:T	rs34852709	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr5	24486695	24486696	chr5:24486696:C:T	rs1169561	C	T	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr5	24644816	24644817	chr5:24644817:T:A	rs72752047	T	A	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr5	25570428	25570429	chr5:25570429:G:T	rs79421956	G	T	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr5	25573738	25573739	chr5:25573739:G:A	rs10068429	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr5	25573745	25573746	chr5:25573746:A:G	rs10061502	A	G	G	Sox3.mouse_HMG_3	0	1	+	2.4808113270610055	3.3060952282073495	AATGATTGTTATTTATC
chr5	25670648	25670649	chr5:25670649:T:A	rs62357270	T	A	T	Sox3.mouse_HMG_3	15	1	+	1.500428900402215	-0.7633805638346061	TATAAATGGGATGCATG
chr5	25695267	25695268	chr5:25695268:T:C	rs10056274	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr5	25735203	25735204	chr5:25735204:G:A	rs30851	G	A	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr5	25963753	25963754	chr5:25963754:G:A	rs72750923	G	A	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr5	26226489	26226490	chr5:26226490:C:G	rs6898004	C	G	-	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr5	26226505	26226506	chr5:26226506:T:C	rs10942168	T	C	-	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr5	26872626	26872627	chr5:26872627:C:T	rs12515805	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr5	27140943	27140944	chr5:27140944:C:T	rs72737296	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr5	27619362	27619363	chr5:27619363:G:T	rs10940680	G	T	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr5	27907605	27907606	chr5:27907606:C:T	rs1991500	C	T	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr5	28109252	28109253	chr5:28109253:G:A	rs58609842	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr5	28397625	28397626	chr5:28397626:A:T	rs4443428	A	T	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr5	28397664	28397665	chr5:28397665:C:T	rs4282327	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr5	28519196	28519197	chr5:28519197:T:C	rs116015288	T	C	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr5	29005648	29005649	chr5:29005649:A:G	rs4867163	A	G	a	Sox3.mouse_HMG_3	15	1	-	7.662334415946724	2.9479410042316556	ACTGATTGGCATTCATG
chr5	29258633	29258634	chr5:29258634:A:G	rs5023619	A	G	A	Sox3.mouse_HMG_3	15	1	+	5.401857652882835	4.543076306026414	ATTAAATTGTATTCAAT
chr5	29304619	29304620	chr5:29304620:T:C	rs55897959	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr5	29717555	29717556	chr5:29717556:A:G	rs3114508	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	29717590	29717591	chr5:29717591:A:T	rs76030189	A	T	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr5	29786830	29786831	chr5:29786831:T:C	rs62348709	T	C	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr5	29822723	29822724	chr5:29822724:C:T	rs74633708	C	T	C	Sox3.mouse_HMG_3	8	1	+	0.22939948161796364	-0.03272026329814226	AGTGAGTGCCTGTCATG
chr5	30014448	30014449	chr5:30014449:T:C	rs10037779	T	C	T	Sox3.mouse_HMG_3	15	1	+	1.3788603090343916	-3.3355331026806767	GGTGTATGGCCGTCATG
chr5	30014449	30014450	chr5:30014450:G:A	rs10045931	G	A	G	Sox3.mouse_HMG_3	16	1	+	1.3788603090343916	1.342919852581866	GGTGTATGGCCGTCATG
chr5	30050660	30050661	chr5:30050661:G:T	rs79866259	G	T	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr5	30108328	30108329	chr5:30108329:A:C	rs9292367	A	C	C	Sox3.mouse_HMG_3	2	1	-	10.669216998223646	3.9202370363520425	TATGCATTTTATTCATA
chr5	30242486	30242487	chr5:30242487:G:A	rs4295402	G	A	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	30562378	30562379	chr5:30562379:A:T	rs10035301	A	T	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr5	31013765	31013766	chr5:31013766:G:A	rs62358280	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr5	31066723	31066724	chr5:31066724:A:C	chr5:31066724:A:C	A	C	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr5	31235597	31235598	chr5:31235598:T:C	rs142523129	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr5	31255853	31255854	chr5:31255854:T:C	rs7349771	T	C	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr5	31376313	31376314	chr5:31376314:C:T	rs334289	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr5	32004283	32004284	chr5:32004284:G:C	rs994043784	G	C	G	Sox3.mouse_HMG_3	8	1	+	4.661984333560144	4.219201664882212	AGTGAATGGTATTAAGT
chr5	32004294	32004295	chr5:32004295:C:A	rs74480011	C	A	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr5	32144323	32144324	chr5:32144324:A:T	rs762432029	A	T	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr5	32455959	32455960	chr5:32455960:A:G	rs57818346	A	G	A	Sox3.mouse_HMG_3	6	1	-	6.684658353806522	0.07670771226572526	GCTGAATTGTATGCATT
chr5	32683332	32683333	chr5:32683333:C:T	rs17539669	C	T	C	Sox3.mouse_HMG_3	6	1	+	3.0506607024628627	9.65861134400366	TTTGAACGGTATTCTTG
chr5	32692182	32692183	chr5:32692183:T:C	rs818126	T	C	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr5	33011234	33011235	chr5:33011235:A:G	rs1508821	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr5	33118758	33118759	chr5:33118759:G:C	rs186998069	G	C	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr5	33272450	33272451	chr5:33272451:T:C	rs148175654	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr5	33291404	33291405	chr5:33291405:G:A	rs114014888	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr5	33316691	33316692	chr5:33316692:T:C	rs73087149	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr5	33337035	33337036	chr5:33337036:A:C	rs145960036	A	C	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr5	33585925	33585926	chr5:33585926:T:C	rs409592	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr5	33978205	33978206	chr5:33978206:A:G	rs1357556583	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	34329313	34329314	chr5:34329314:A:C	rs11747776	A	C	-	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	34466950	34466951	chr5:34466951:C:G	rs6898389	C	G	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr5	34690555	34690556	chr5:34690556:G:C	rs7735792	G	C	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr5	34710078	34710079	chr5:34710079:G:A	rs146757107	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr5	34794112	34794113	chr5:34794113:G:C	rs336459	G	C	C	Sox3.mouse_HMG_3	0	1	+	2.323112391496699	0.5993208923600806	GAGGAATTCCATTTAAA
chr5	34806330	34806331	chr5:34806331:A:C	rs71615831	A	C	A	Sox3.mouse_HMG_3	2	1	-	8.115689347124178	1.3667093852525733	GATGAACTGCAGTCAAG
chr5	35047105	35047106	chr5:35047106:G:A	rs37381	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr5	35202829	35202830	chr5:35202830:T:A	rs73078878	T	A	T	Sox3.mouse_HMG_3	10	1	-	7.840344504634663	1.089293019453193	GCTAAATTACATTCATG
chr5	35469689	35469690	chr5:35469690:T:C	rs146673086	T	C	T	Sox3.mouse_HMG_3	15	1	+	4.647431299253083	-0.06696211246198525	AAGGATTGCCATTCATG
chr5	35599301	35599302	chr5:35599302:G:A	rs7700662	G	A	G	Sox3.mouse_HMG_3	9	1	-	2.3235749790025655	2.3312116559943132	AATGAATTTCTGTAATG
chr5	35647712	35647713	chr5:35647713:T:C	rs4703367	T	C	C	Sox3.mouse_HMG_3	14	1	-	6.10526636357656	-0.2766798028503501	TAGGAATGGCATACATA
chr5	36360370	36360371	chr5:36360371:G:C	rs11744294	G	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr5	36459480	36459481	chr5:36459481:C:T	rs566000970	C	T	C	Sox3.mouse_HMG_3	9	1	+	2.4571405131525124	2.4647771901442583	TTTGAATGCCTTTCCTG
chr5	36459481	36459482	chr5:36459482:T:C	rs2455277	T	C	C	Sox3.mouse_HMG_3	10	1	+	2.4571405131525124	2.4571405131525124	TTTGAATGCCTTTCCTG
chr5	36730901	36730902	chr5:36730902:A:G	rs245674	A	G	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr5	36769473	36769474	chr5:36769474:G:A	rs1466861	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr5	36948188	36948189	chr5:36948189:C:G	rs71617774	C	G	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr5	37788051	37788052	chr5:37788052:A:G	rs575219101	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr5	37816385	37816386	chr5:37816386:C:T	rs72745196	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr5	37938301	37938302	chr5:37938302:T:C	rs6895414	T	C	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr5	38782368	38782369	chr5:38782369:C:G	rs62353349	C	G	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr5	38800013	38800014	chr5:38800014:T:C	rs72730811	T	C	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr5	38800019	38800020	chr5:38800020:T:C	rs17457765	T	C	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr5	38888199	38888200	chr5:38888200:G:T	rs116792249	G	T	G	Sox3.mouse_HMG_3	9	1	-	2.516730045263996	-3.5374885792443242	TGTGAATGACATGCCTG
chr5	39016041	39016042	chr5:39016042:G:T	rs186068391	G	T	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr5	39232442	39232443	chr5:39232443:G:A	rs74697430	G	A	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	39258289	39258290	chr5:39258290:G:A	rs113741668	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr5	39355545	39355546	chr5:39355546:G:A	rs1421095	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr5	39463094	39463095	chr5:39463095:G:A	rs17335879	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr5	39655303	39655304	chr5:39655304:C:T	rs10068611	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr5	39706830	39706831	chr5:39706831:A:G	rs10077158	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr5	40025859	40025860	chr5:40025860:A:G	rs17218399	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr5	40221078	40221079	chr5:40221079:A:C	rs148909977	A	C	A	Sox3.mouse_HMG_3	10	1	+	4.43375251968715	-2.31729896549432	TATGAGTTACATTTATG
chr5	40221083	40221084	chr5:40221084:T:C	rs12521583	T	C	T	Sox3.mouse_HMG_3	15	1	+	4.43375251968715	-0.28064089202791775	TATGAGTTACATTTATG
chr5	40223997	40223998	chr5:40223998:C:G	rs180844636	C	G	C	Sox3.mouse_HMG_3	7	1	-	3.0422177371305628	-3.2112263850768255	CAAAAATGTTATTCAAA
chr5	40391001	40391002	chr5:40391002:C:T	rs6865484	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr5	40446773	40446774	chr5:40446774:T:C	rs67224409	T	C	C	Sox3.mouse_HMG_3	7	1	+	2.035893934483019	-3.367517245494299	TATGAAATTCATTTATC
chr5	40548134	40548135	chr5:40548135:G:C	chr5:40548135:G:C	G	C	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr5	40670717	40670718	chr5:40670718:A:G	rs4599576	A	G	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr5	41186269	41186270	chr5:41186270:A:C	rs77298425	A	C	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr5	42119958	42119959	chr5:42119959:C:A	rs9292840	C	A	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	42555828	42555829	chr5:42555829:G:A	rs7703713	G	A	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	42621996	42621997	chr5:42621997:T:C	rs1031889346	T	C	T	Sox3.mouse_HMG_3	10	1	-	3.6491038974792938	-2.9588467440615025	AATTAATTACATTCCTA
chr5	42686833	42686834	chr5:42686834:C:T	rs4315928	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr5	42855460	42855461	chr5:42855461:C:G	rs148692136	C	G	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr5	42879470	42879471	chr5:42879471:T:A	rs309937	T	A	T	Sox3.mouse_HMG_3	12	1	+	4.401926015621211	-1.710884844106019	TATAAATGCTAATCAAA
chr5	43134981	43134982	chr5:43134982:C:T	rs72750768	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr5	43258425	43258426	chr5:43258426:A:G	rs10462048	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	43674743	43674744	chr5:43674744:C:T	rs768357	C	T	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr5	44057318	44057319	chr5:44057319:A:G	rs55663749	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr5	44219148	44219149	chr5:44219149:G:A	rs10063178	G	A	A	Sox3.mouse_HMG_3	7	1	+	2.9429387227921744	-3.6106099918655534	AATGAGAGGCATTCAAG
chr5	44325219	44325220	chr5:44325220:A:T	rs4498258	A	T	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	44385401	44385402	chr5:44385402:G:T	rs17227564	G	T	G	Sox3.mouse_HMG_3	11	1	+	3.7841434630851394	5.218579563380946	TATGAATGATTGTCTTA
chr5	44400556	44400557	chr5:44400557:T:C	rs16901841	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr5	44538410	44538411	chr5:44538411:A:C	rs6866555	A	C	A	Sox3.mouse_HMG_3	10	1	+	1.0480168005978832	-5.703034684583587	GATGAATTGCACACAGC
chr5	44659716	44659717	chr5:44659717:A:G	rs75382491	A	G	A	Sox3.mouse_HMG_3	8	1	-	0.3914247631756562	0.653544508091763	GATGAATGTGTCTCATG
chr5	44715160	44715161	chr5:44715161:A:G	rs35246196	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr5	44939190	44939191	chr5:44939191:G:A	rs12517690	G	A	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr5	45456974	45456975	chr5:45456975:T:C	rs13354798	T	C	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	45509472	45509473	chr5:45509473:G:A	rs17293295	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr5	50301287	50301288	chr5:50301288:A:G	rs1109691	A	G	a	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr5	50666331	50666332	chr5:50666332:T:A	rs66912405	T	A	t	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr5	50666339	50666340	chr5:50666340:G:C	rs78868018	G	C	g	Sox3.mouse_HMG_3	13	1	-	2.4157594532708684	-4.191501157191151	AAGGAATTATAGTCTTG
chr5	50666344	50666345	chr5:50666345:T:C	rs62366936	T	C	t	Sox3.mouse_HMG_3	8	1	-	2.4157594532708684	3.0388761004486824	AAGGAATTATAGTCTTG
chr5	51583034	51583035	chr5:51583035:C:T	chr5:51583035:C:T	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr5	51662188	51662189	chr5:51662189:A:G	rs72765668	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr5	52029728	52029729	chr5:52029729:G:A	rs11741882	G	A	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr5	52063049	52063050	chr5:52063050:A:T	rs12153748	A	T	A	Sox3.mouse_HMG_3	7	1	-	5.481439810111565	-0.2220759623160905	TTTGGATTTTAGTCATT
chr5	52492105	52492106	chr5:52492106:A:G	rs10940253	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	52605502	52605503	chr5:52605503:C:T	rs350416	C	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr5	52607294	52607295	chr5:52607295:T:A	rs350417	T	A	T	Sox3.mouse_HMG_3	16	1	-	2.659483345665688	1.5084942859131916	GGTGACTCATATTCATA
chr5	52657486	52657487	chr5:52657487:A:G	rs35949279	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr5	52724790	52724791	chr5:52724791:T:C	rs658771	T	C	T	Sox3.mouse_HMG_3	4	1	-	2.5321382249451614	-3.8506785030489072	ATTGAATGCTGTTCACT
chr5	52857111	52857112	chr5:52857112:C:T	rs6894627	C	T	T	Sox3.mouse_HMG_3	13	1	+	5.005482283858836	-1.601778326603183	GCTGCATTCTATTCATC
chr5	52934939	52934940	chr5:52934940:T:C	rs16880533	T	C	T	Sox3.mouse_HMG_3	0	1	-	2.1318033829033065	2.9570872840496496	AGTGATTGGCATTTATG
chr5	52985468	52985469	chr5:52985469:C:A	rs1365611546	C	A	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr5	52985499	52985500	chr5:52985500:A:G	rs116426727	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr5	53009165	53009166	chr5:53009166:A:G	rs153141	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr5	53028090	53028091	chr5:53028091:G:A	rs897908196	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr5	53407108	53407109	chr5:53407109:T:C	rs62359266	T	C	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr5	53607784	53607785	chr5:53607785:A:G	rs377077	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr5	53752379	53752380	chr5:53752380:A:G	rs271217	A	G	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr5	53895312	53895313	chr5:53895313:C:T	rs7729734	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr5	54062427	54062428	chr5:54062428:C:A	rs6874203	C	A	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr5	54194906	54194907	chr5:54194907:T:C	rs1345815	T	C	C	Sox3.mouse_HMG_3	15	1	+	3.1958828348652952	-1.5185105768497733	GAGGACTTCTAGTCATG
chr5	54290002	54290003	chr5:54290003:G:A	rs6891928	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	54646018	54646019	chr5:54646019:T:G	chr5:54646019:T:G	T	G	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	54659552	54659553	chr5:54659553:C:T	rs58268788	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr5	54695737	54695738	chr5:54695738:A:C	rs1373990	A	C	C	Sox3.mouse_HMG_3	2	1	-	1.6193528085750517	-5.1296271532965525	GTTGAAGGCAAGTCATG
chr5	54696503	54696504	chr5:54696504:C:T	rs77149778	C	T	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr5	54703938	54703939	chr5:54703939:G:A	rs4865585	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr5	54837192	54837193	chr5:54837193:G:A	rs760359472	G	A	G	Sox3.mouse_HMG_3	7	1	+	3.7113361659446875	-2.842212548713041	GATAAATGTGAGTCAAA
chr5	55351771	55351772	chr5:55351772:A:G	rs10071980	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr5	55764796	55764797	chr5:55764797:G:A	rs13183395	G	A	G	Sox3.mouse_HMG_3	4	1	+	4.133473541892515	10.516290269886584	AATGGAAGGTATTCATT
chr5	55764827	55764828	chr5:55764828:G:A	rs7730742	G	A	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr5	55857124	55857125	chr5:55857125:A:G	rs1423577	A	G	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr5	55923887	55923888	chr5:55923888:A:G	rs162085	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr5	56100920	56100921	chr5:56100921:G:A	rs181616836	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	56279730	56279731	chr5:56279731:A:C	rs152318	A	C	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr5	56284948	56284949	chr5:56284949:G:A	rs150364	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr5	56314133	56314134	chr5:56314134:A:G	rs67896921	A	G	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr5	56534308	56534309	chr5:56534309:G:A	rs180796683	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr5	56634752	56634753	chr5:56634753:A:G	rs1279627	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr5	56684743	56684744	chr5:56684744:G:A	rs16886024	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr5	56736791	56736792	chr5:56736792:A:G	rs12659430	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr5	56840740	56840741	chr5:56840741:T:C	rs10471993	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr5	57082654	57082655	chr5:57082655:A:G	rs331044	A	G	A	Sox3.mouse_HMG_3	4	1	+	1.6646834949280926	-4.718133233065978	AGTAATTTCCATTCATG
chr5	57438218	57438219	chr5:57438219:A:C	rs72763469	A	C	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr5	57503730	57503731	chr5:57503731:C:A	rs546137131	C	A	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr5	57650747	57650748	chr5:57650748:C:T	rs77960486	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr5	57818381	57818382	chr5:57818382:G:A	rs7723284	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr5	58013203	58013204	chr5:58013204:C:G	rs1454916	C	G	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr5	58013244	58013245	chr5:58013245:C:T	rs11749915	C	T	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr5	58020889	58020890	chr5:58020890:T:C	rs7731553	T	C	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr5	58056653	58056654	chr5:58056654:T:C	rs7736730	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	58475259	58475260	chr5:58475260:A:G	rs6450476	A	G	G	Sox3.mouse_HMG_3	14	1	+	0.3558535241285996	-6.026092642298311	GGAGAATGGTGGTCATC
chr5	58475275	58475276	chr5:58475276:A:G	rs4699927	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr5	58619426	58619427	chr5:58619427:G:C	rs10055649	G	C	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr5	58999186	58999187	chr5:58999187:A:G	rs7714708	A	G	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr5	59005264	59005265	chr5:59005265:T:A	rs79927844	T	A	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr5	59020168	59020169	chr5:59020169:A:G	rs72764055	A	G	A	Sox3.mouse_HMG_3	5	1	+	3.6394187632456108	-2.849416158825255	TAAAAATTTCATTCAAA
chr5	59188127	59188128	chr5:59188128:G:A	rs71626140	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr5	59337334	59337335	chr5:59337335:A:C	rs114161505	A	C	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr5	59357849	59357850	chr5:59357850:T:A	rs115754550	T	A	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr5	59647947	59647948	chr5:59647948:T:C	rs298022	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr5	59783047	59783048	chr5:59783048:G:T	rs148231790	G	T	G	Sox3.mouse_HMG_3	14	1	-	2.0453380242131765	8.427284190640087	TATGAGTTATAGTCCTT
chr5	60309147	60309148	chr5:60309148:T:A	rs16877890	T	A	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr5	60471096	60471097	chr5:60471097:G:A	rs7700547	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr5	60487749	60487750	chr5:60487750:A:G	rs79563697	A	G	A	Sox3.mouse_HMG_3	2	1	-	6.973320662373224	0.3674415441422936	CATGAATCACAGTCAAG
chr5	60493372	60493373	chr5:60493373:T:C	rs75467925	T	C	T	Sox3.mouse_HMG_3	14	1	-	8.708064425360014	2.3261182589331044	CATGAATTCCAGACATG
chr5	60812843	60812844	chr5:60812844:G:C	rs10062465	G	C	.	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	61261416	61261417	chr5:61261417:C:T	rs12523409	C	T	C	Sox3.mouse_HMG_3	3	1	-	10.183839019039606	4.402274131510374	AATGAATGAGATTCAAA
chr5	61527169	61527170	chr5:61527170:C:T	rs13179091	C	T	T	Sox3.mouse_HMG_3	15	1	+	3.697283383341191	8.411676795056259	GTTGAATTACATGCACA
chr5	61663663	61663664	chr5:61663664:G:A	rs40148	G	A	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr5	61683402	61683403	chr5:61683403:T:C	rs4700426	T	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	61687199	61687200	chr5:61687200:G:C	rs13188780	G	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr5	61735296	61735297	chr5:61735297:A:G	rs168802	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr5	62089078	62089079	chr5:62089079:A:C	rs969752	A	C	C	Sox3.mouse_HMG_3	4	1	+	6.800470936443554	0.049929428324169356	GGTGAATTTCAGTCCTG
chr5	62403203	62403204	chr5:62403204:G:A	rs77256376	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr5	62722659	62722660	chr5:62722660:G:A	rs2363270	G	A	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	62733999	62734000	chr5:62734000:A:G	rs16890992	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	62792317	62792318	chr5:62792318:T:C	rs4700519	T	C	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr5	63916967	63916968	chr5:63916968:T:G	rs77739313	T	G	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr5	64145312	64145313	chr5:64145313:T:C	rs12520115	T	C	T	Sox3.mouse_HMG_3	6	1	+	6.660503731756526	0.05255309021572818	TTTGAATGGCTGTCATT
chr5	64180802	64180803	chr5:64180803:T:C	chr5:64180803:T:C	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr5	64970909	64970910	chr5:64970910:G:A	rs10077685	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr5	65190520	65190521	chr5:65190521:A:G	rs544467222	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr5	65253520	65253521	chr5:65253521:C:T	rs79791445	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr5	65329684	65329685	chr5:65329685:C:T	rs2307121	C	T	C	Sox3.mouse_HMG_3	9	1	+	2.8309808220738866	2.8386174990656325	TTTGAACTGCAGTCAGT
chr5	65612057	65612058	chr5:65612058:G:C	rs37332	G	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	65862880	65862881	chr5:65862881:T:C	rs17185365	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr5	66034180	66034181	chr5:66034181:A:G	rs16894756	A	G	a	Sox3.mouse_HMG_3	12	1	-	3.7614252744504917	-2.431428292950275	TAAGAATTCCTGTCATA
chr5	66209335	66209336	chr5:66209336:C:T	rs554262082	C	T	-	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr5	66540047	66540048	chr5:66540048:C:T	rs4547878	C	T	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr5	66639103	66639104	chr5:66639104:C:G	rs78395908	C	G	c	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr5	66782485	66782486	chr5:66782486:G:A	rs33696	G	A	A	Sox3.mouse_HMG_3	3	1	+	1.4771812651726115	-4.304383622356621	CAAGAAGTCCATTCAAA
chr5	66887300	66887301	chr5:66887301:C:G	rs190474	C	G	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	66959497	66959498	chr5:66959498:A:G	rs2280174	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr5	66988468	66988469	chr5:66988469:A:G	rs1703249	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr5	67193736	67193737	chr5:67193737:A:G	rs5744478	A	G	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr5	67246138	67246139	chr5:67246139:A:G	rs73112096	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr5	67246156	67246157	chr5:67246157:A:G	rs78356845	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.8335931680167399	-2.8808002436983284	TTTCATTTGTATTCATG
chr5	67246184	67246185	chr5:67246185:A:G	rs979841980	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr5	67291008	67291009	chr5:67291009:G:A	rs112358388	G	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr5	67536860	67536861	chr5:67536861:T:G	chr5:67536861:T:G	T	G	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	67544098	67544099	chr5:67544099:C:G	rs138860839	C	G	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	67636409	67636410	chr5:67636410:C:G	rs3934546	C	G	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr5	67809565	67809566	chr5:67809566:A:G	rs16897030	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr5	67817818	67817819	chr5:67817819:C:T	rs73114638	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr5	68028049	68028050	chr5:68028050:A:T	rs467093	A	T	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr5	68129581	68129582	chr5:68129582:C:T	rs61128998	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	68528862	68528863	chr5:68528863:C:T	rs56194430	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr5	68684215	68684216	chr5:68684216:C:T	rs1319561	C	T	C	Sox3.mouse_HMG_3	9	1	+	1.1694373506812508	1.1770740276729967	AAGGAATTCCATACAGG
chr5	68752018	68752019	chr5:68752019:G:A	rs78934949	G	A	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr5	68885109	68885110	chr5:68885110:G:T	rs58388027	G	T	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr5	68966625	68966626	chr5:68966626:T:C	rs4443379	T	C	c	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr5	69033234	69033235	chr5:69033235:G:A	rs6866288	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr5	69033236	69033237	chr5:69033237:C:T	rs164800	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr5	69129871	69129872	chr5:69129872:A:G	rs6886492	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr5	69235865	69235866	chr5:69235866:G:A	rs2930949	G	A	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr5	69360513	69360514	chr5:69360514:T:C	rs2010354	T	C	.	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	71632423	71632424	chr5:71632424:T:C	rs277982	T	C	T	Sox3.mouse_HMG_3	1	1	-	7.264131351512415	4.164001415075122	AATGAATGTTTGTCAAA
chr5	71781460	71781461	chr5:71781461:G:C	rs35827712	G	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	71914569	71914570	chr5:71914570:A:G	rs66602696	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr5	72077175	72077176	chr5:72077176:T:G	rs922071	T	G	T	Sox3.mouse_HMG_3	16	1	-	7.599980390624343	5.582064591399568	GATGGATTTCAGTCAAA
chr5	72134720	72134721	chr5:72134721:T:C	rs753762097	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	72216974	72216975	chr5:72216975:T:C	rs17375040	T	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr5	72434286	72434287	chr5:72434287:C:T	chr5:72434287:C:T	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr5	72518221	72518222	chr5:72518222:T:G	chr5:72518222:T:G	T	G	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	72523989	72523990	chr5:72523990:T:G	rs246575	T	G	G	Sox3.mouse_HMG_3	16	1	+	3.082776765591163	4.269706281796185	CCTGAATTCTAGTCCTT
chr5	72524089	72524090	chr5:72524090:T:C	rs61091125	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr5	72602127	72602128	chr5:72602128:C:T	rs33426	C	T	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr5	72892974	72892975	chr5:72892975:C:T	rs62360683	C	T	C	Sox3.mouse_HMG_3	9	1	+	3.202979621009745	3.2106162980014927	AATGAATGGCTTCCAAA
chr5	73229561	73229562	chr5:73229562:A:G	rs115375424	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr5	73254565	73254566	chr5:73254566:C:T	rs7715700	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr5	73279090	73279091	chr5:73279091:A:G	rs10040279	A	G	G	Sox3.mouse_HMG_3	10	1	+	2.6260571755650437	-3.9818934659757526	TGTGAATTTGATTCCTG
chr5	73394632	73394633	chr5:73394633:T:C	rs4398617	T	C	t	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	73442067	73442068	chr5:73442068:A:G	rs874973	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr5	73781523	73781524	chr5:73781524:A:G	rs4413512	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr5	73817046	73817047	chr5:73817047:A:G	rs6873586	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr5	73963237	73963238	chr5:73963238:G:A	rs145856091	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr5	74100592	74100593	chr5:74100593:G:A	rs1159846	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr5	74127699	74127700	chr5:74127700:A:G	rs17555780	A	G	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr5	74150038	74150039	chr5:74150039:A:G	rs176658	A	G	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr5	74285922	74285923	chr5:74285923:G:C	rs62357259	G	C	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr5	74310200	74310201	chr5:74310201:A:G	rs292199	A	G	a	Sox3.mouse_HMG_3	2	1	-	8.580628974998362	1.9747498567674329	AATGAAAGGTATTCAGG
chr5	74397041	74397042	chr5:74397042:G:A	rs4703633	G	A	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr5	74469166	74469167	chr5:74469167:A:G	rs77949436	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.3662357866219876	-0.7338941498153038	TATGAAATACATACAAA
chr5	74492148	74492149	chr5:74492149:C:G	rs185498199	C	G	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr5	74562308	74562309	chr5:74562309:G:A	rs74929071	G	A	G	Sox3.mouse_HMG_3	9	1	-	1.5085726799033887	1.516209356895133	TGTGAATGCCATTATTT
chr5	74639245	74639246	chr5:74639246:A:C	rs115912312	A	C	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr5	74642975	74642976	chr5:74642976:G:A	rs1028967246	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr5	74653734	74653735	chr5:74653735:C:T	rs59854202	C	T	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr5	74765418	74765419	chr5:74765419:T:C	rs72764655	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	74935287	74935288	chr5:74935288:T:C	rs115379355	T	C	T	Sox3.mouse_HMG_3	10	1	-	5.356880584114166	-1.2510700574266305	CTTGACTGGTAGTCATT
chr5	74991987	74991988	chr5:74991988:C:T	rs10474423	C	T	C	Sox3.mouse_HMG_3	11	1	-	2.3969384181943965	-2.2532363076117417	GATGAATGCCTGCCATC
chr5	75575301	75575302	chr5:75575302:C:T	rs5744646	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr5	75614146	75614147	chr5:75614147:C:T	rs11748027	C	T	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr5	75640504	75640505	chr5:75640505:G:A	rs77987663	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr5	75844173	75844174	chr5:75844174:G:A	rs10056626	G	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	76005783	76005784	chr5:76005784:T:C	rs6866605	T	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr5	76175465	76175466	chr5:76175466:A:G	rs4493648	A	G	.	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr5	76231030	76231031	chr5:76231031:T:C	rs765186300	T	C	T	Sox3.mouse_HMG_3	14	1	-	2.0279070226569624	-4.354039143769948	GAGAAATTTCATTCAGA
chr5	76372065	76372066	chr5:76372066:G:T	rs77758792	G	T	G	Sox3.mouse_HMG_3	15	1	+	0.9010921720916596	4.0236829831849015	AATGACTGGCAGGCAGG
chr5	76431545	76431546	chr5:76431546:C:T	rs114683094	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr5	76431552	76431553	chr5:76431553:G:A	rs56032324	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr5	76513460	76513461	chr5:76513461:T:C	rs72775791	T	C	T	Sox3.mouse_HMG_3	14	1	-	4.557967684744198	-1.8239784816827136	TAGGAATTTTATACATA
chr5	76595177	76595178	chr5:76595178:A:C	rs9293690	A	C	A	Sox3.mouse_HMG_3	1	1	+	9.216347959048921	5.039488445193025	AATGCATTCCATTCATT
chr5	76625146	76625147	chr5:76625147:A:G	rs457717	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr5	76669482	76669483	chr5:76669483:T:G	rs149585623	T	G	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr5	76684541	76684542	chr5:76684542:A:T	rs7709577	A	T	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr5	77339733	77339734	chr5:77339734:T:G	rs894081629	T	G	T	Sox3.mouse_HMG_3	14	1	-	0.9275408457811598	-5.454405320645751	GCAGAATGACAGTAATG
chr5	77561087	77561088	chr5:77561088:T:C	chr5:77561088:T:C	T	C	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	77620726	77620727	chr5:77620727:T:A	rs56820959	T	A	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	77703300	77703301	chr5:77703301:G:C	chr5:77703301:G:C	G	C	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr5	77970793	77970794	chr5:77970794:A:G	rs355419	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr5	78286373	78286374	chr5:78286374:C:T	rs12656940	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	78286388	78286389	chr5:78286389:T:C	rs56156114	T	C	T	Sox3.mouse_HMG_3	12	1	+	2.079853856668061	-4.112999710732706	CATGAATGAGATTAAGG
chr5	78508432	78508433	chr5:78508433:T:C	rs73138147	T	C	T	Sox3.mouse_HMG_3	14	1	-	0.6176130358817722	-5.764333130545139	TCTGATTTGCTTTCATG
chr5	78510766	78510767	chr5:78510767:G:A	rs67068840	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	78549323	78549324	chr5:78549324:T:C	rs10057293	T	C	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr5	78598223	78598224	chr5:78598224:T:C	rs344657	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr5	78640872	78640873	chr5:78640873:T:C	rs1005890902	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	78655075	78655076	chr5:78655076:T:C	rs341919	T	C	T	Sox3.mouse_HMG_3	10	1	-	1.7822685415925739	-4.8256820999482235	ATTGTATGTCATTCTTG
chr5	78772160	78772161	chr5:78772161:C:T	rs2132537	C	T	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr5	78904361	78904362	chr5:78904362:C:T	rs337860	C	T	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr5	78972864	78972865	chr5:78972865:C:T	rs10060752	C	T	C	Sox3.mouse_HMG_3	11	1	-	3.873581789281987	-0.7765929365241504	TATGATTGTCAGTAATG
chr5	78972874	78972875	chr5:78972875:T:C	rs75355074	T	C	T	Sox3.mouse_HMG_3	1	1	-	3.873581789281987	0.7734518528446959	TATGATTGTCAGTAATG
chr5	79455873	79455874	chr5:79455874:C:T	rs28507717	C	T	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr5	79469188	79469189	chr5:79469189:T:C	rs9293784	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr5	79536258	79536259	chr5:79536259:G:A	rs41527045	G	A	A	Sox3.mouse_HMG_3	0	1	-	3.737668258180138	5.192538903517002	CCTGAATTCTAATCAAG
chr5	79694661	79694662	chr5:79694662:T:C	rs16877044	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr5	79932695	79932696	chr5:79932696:G:T	rs12658005	G	T	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	79956051	79956052	chr5:79956052:A:G	rs1032341	A	G	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	80054902	80054903	chr5:80054903:T:C	rs10474605	T	C	C	Sox3.mouse_HMG_3	6	1	+	2.3628721877009404	-4.245078453839857	AATGAATCACACTCAGG
chr5	80054925	80054926	chr5:80054926:T:C	rs1214989898	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr5	80057162	80057163	chr5:80057163:G:A	rs10474606	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	80090280	80090281	chr5:80090281:T:C	rs2438644	T	C	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr5	80091950	80091951	chr5:80091951:A:C	rs1015705634	A	C	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr5	80127444	80127445	chr5:80127445:A:G	rs73125917	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr5	80165603	80165604	chr5:80165604:T:C	rs75946551	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr5	80176903	80176904	chr5:80176904:A:G	rs6866987	A	G	A	Sox3.mouse_HMG_3	16	1	-	6.442169191044163	5.575242451571885	ATTGAATTATATTCTTT
chr5	80198975	80198976	chr5:80198976:C:A	rs13359567	C	A	C	Sox3.mouse_HMG_3	1	1	-	3.4982309372622113	3.6282840655104094	GGTGACTTACAGTCAGA
chr5	80493725	80493726	chr5:80493726:A:G	rs249001	A	G	A	Sox3.mouse_HMG_3	5	1	+	4.512077369703319	-1.9767575523675438	GGTAAATTCTAGTCAGA
chr5	80787811	80787812	chr5:80787812:G:A	rs33010	G	A	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	80836964	80836965	chr5:80836965:A:G	rs245375	A	G	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	80930794	80930795	chr5:80930795:A:G	rs489018	A	G	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr5	81067683	81067684	chr5:81067684:G:A	rs26421	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr5	81108526	81108527	chr5:81108527:T:C	rs78530156	T	C	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	81397228	81397229	chr5:81397229:C:T	chr5:81397229:C:T	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr5	81546072	81546073	chr5:81546073:C:T	rs2973341	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr5	81546094	81546095	chr5:81546095:A:G	rs10942267	A	G	A	Sox3.mouse_HMG_3	6	1	-	3.2353705526644365	-3.3725800888763615	AATAAATGATAGCCATT
chr5	81554346	81554347	chr5:81554347:A:G	rs35340025	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr5	81755521	81755522	chr5:81755522:A:G	rs116066531	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr5	82105979	82105980	chr5:82105980:T:A	rs324911	T	A	A	Sox3.mouse_HMG_3	0	1	-	3.837074552970921	4.393437600317513	AATTAATTCTATTCTTA
chr5	82307624	82307625	chr5:82307625:G:A	rs226208	G	A	G	Sox3.mouse_HMG_3	16	1	+	2.064499306176628	2.0285588497241025	TGTGAATTGCATGGATG
chr5	82886159	82886160	chr5:82886160:A:G	rs146811146	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr5	83027293	83027294	chr5:83027294:G:C	rs75682503	G	C	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr5	83027320	83027321	chr5:83027321:T:C	rs16900113	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr5	83099529	83099530	chr5:83099530:A:T	rs17284218	A	T	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr5	83100054	83100055	chr5:83100055:C:T	rs13180356	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr5	83338131	83338132	chr5:83338132:G:A	rs10514254	G	A	G	Sox3.mouse_HMG_3	11	1	+	3.953329880554655	-0.6968448452514828	CCAGAATGGTAGTCAAG
chr5	83479084	83479085	chr5:83479085:A:G	rs33599	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr5	83655588	83655589	chr5:83655589:C:A	rs13155729	C	A	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr5	83727219	83727220	chr5:83727220:T:G	rs28571929	T	G	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr5	83924220	83924221	chr5:83924221:C:T	rs35871321	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr5	84010799	84010800	chr5:84010800:C:A	rs2193957	C	A	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr5	84535500	84535501	chr5:84535501:G:A	rs116713052	G	A	G	Sox3.mouse_HMG_3	8	1	-	3.761374235315465	3.499254490399359	TTTGAGTGCGATTCATG
chr5	84790665	84790666	chr5:84790666:A:G	rs73772670	A	G	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr5	84817608	84817609	chr5:84817609:A:C	rs34600720	A	C	a	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr5	84875724	84875725	chr5:84875725:A:C	chr5:84875725:A:C	A	C	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	85263390	85263391	chr5:85263391:A:G	rs4544857	A	G	.	Sox3.mouse_HMG_3	14	1	+	2.662981297938293	-3.7189648684886176	TGTGAGAGGCATTCATG
chr5	85332301	85332302	chr5:85332302:T:C	rs434346	T	C	N	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	85480011	85480012	chr5:85480012:C:T	rs77970613	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr5	85671443	85671444	chr5:85671444:G:A	rs11748520	G	A	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr5	85805819	85805820	chr5:85805820:T:C	rs6896477	T	C	t	Sox3.mouse_HMG_3	6	1	+	3.3521799558973076	-3.2557706856434896	TATGGATGACATGCAAG
chr5	85816811	85816812	chr5:85816812:A:G	rs4920841	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr5	85816820	85816821	chr5:85816821:A:G	rs1500145	A	G	G	Sox3.mouse_HMG_3	1	1	+	2.50463600036156	-0.5954939360757328	CATAAATGATATTAAAG
chr5	85857892	85857893	chr5:85857893:G:A	rs1587467	G	A	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr5	86172151	86172152	chr5:86172152:A:G	rs13181836	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr5	86185731	86185732	chr5:86185732:A:C	rs73142334	A	C	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr5	86619098	86619099	chr5:86619099:T:A	rs971223594	T	A	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr5	86878446	86878447	chr5:86878447:G:A	rs10054518	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr5	87099180	87099181	chr5:87099181:A:T	rs73773217	A	T	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr5	87099207	87099208	chr5:87099208:C:T	rs79267348	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr5	87121311	87121312	chr5:87121312:A:G	rs191150154	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr5	87602304	87602305	chr5:87602305:A:G	rs1120520	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr5	87769577	87769578	chr5:87769578:C:T	rs926624820	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr5	88093454	88093455	chr5:88093455:C:T	rs979617679	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr5	88145962	88145963	chr5:88145963:G:A	rs116594600	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr5	88244889	88244890	chr5:88244890:T:C	rs780402	T	C	C	Sox3.mouse_HMG_3	11	1	+	3.1378433182920205	-2.9467675078099242	TAGGAATTTTATTCTTT
chr5	89271751	89271752	chr5:89271752:T:C	rs148428442	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr5	89272595	89272596	chr5:89272596:G:A	rs147611028	G	A	G	Sox3.mouse_HMG_3	2	1	+	3.759673631023233	4.781324878555214	AAGGAATGGCTTTCATT
chr5	89343806	89343807	chr5:89343807:C:T	rs151150373	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	89527196	89527197	chr5:89527197:G:A	rs6878642	G	A	A	Sox3.mouse_HMG_3	2	1	-	6.615553635867759	13.22143275409869	TACAAATGGCATTCATG
chr5	89607007	89607008	chr5:89607008:A:G	rs7726306	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr5	89709912	89709913	chr5:89709913:A:C	rs4254935	A	C	A	Sox3.mouse_HMG_3	6	1	-	2.942715607420368	-3.8083358777611043	GATCAATCTCAGTCATT
chr5	90222015	90222016	chr5:90222016:T:C	rs10059737	T	C	T	Sox3.mouse_HMG_3	14	1	-	1.9045356919531895	-4.477410474473721	GCTGAATGACAGTAACA
chr5	90338112	90338113	chr5:90338113:G:A	rs6895123	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr5	90390384	90390385	chr5:90390385:C:A	rs2935527	C	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	90866306	90866307	chr5:90866307:A:G	rs2443087	A	G	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	91118589	91118590	chr5:91118590:A:C	rs2973446	A	C	C	Sox3.mouse_HMG_3	1	1	-	2.4764097036198747	2.3463565753716766	GTTAAATTCCTTTCATG
chr5	91269458	91269459	chr5:91269459:C:T	rs72786338	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr5	91382192	91382193	chr5:91382193:T:C	rs1213649361	T	C	T	Sox3.mouse_HMG_3	9	1	+	1.851296857934253	1.843660180942507	AATGACAGATAGTCATT
chr5	91503934	91503935	chr5:91503935:A:G	rs10041527	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr5	91865495	91865496	chr5:91865496:T:G	rs7704835	T	G	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr5	91978061	91978062	chr5:91978062:A:T	rs10074517	A	T	A	Sox3.mouse_HMG_3	11	1	-	3.5042451483954693	-2.580365677706477	GATGAATGTCATGCCAA
chr5	92712087	92712088	chr5:92712088:A:G	rs10075131	A	G	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr5	92770085	92770086	chr5:92770086:T:C	rs17604522	T	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr5	93150916	93150917	chr5:93150917:T:C	rs114243455	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr5	93576045	93576046	chr5:93576046:C:T	rs1844343	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr5	94433897	94433898	chr5:94433898:T:C	rs75542324	T	C	t	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr5	94659883	94659884	chr5:94659884:A:G	rs11948061	A	G	-	Sox3.mouse_HMG_3	10	1	+	2.770380030644332	-3.8375706108964653	TGTGCATGGCATTCGTG
chr5	94693369	94693370	chr5:94693370:G:A	rs56018722	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr5	94704435	94704436	chr5:94704436:C:T	chr5:94704436:C:T	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr5	94738006	94738007	chr5:94738007:T:C	rs771514236	T	C	T	Sox3.mouse_HMG_3	10	1	-	7.48821081819511	0.8802601766543128	GATGAATGGCATTTAGC
chr5	95177641	95177642	chr5:95177642:C:T	rs71630704	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr5	95584261	95584262	chr5:95584262:A:G	rs6866194	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr5	95584296	95584297	chr5:95584297:G:T	rs188918161	G	T	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr5	95698553	95698554	chr5:95698554:C:G	rs153913	C	G	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	95726738	95726739	chr5:95726739:A:G	rs75966684	A	G	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr5	95758586	95758587	chr5:95758587:A:C	rs1021220653	A	C	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr5	96257926	96257927	chr5:96257927:A:G	rs79647256	A	G	A	Sox3.mouse_HMG_3	12	1	+	3.5228574716577565	3.2545934850630767	GATAAATTTCATACAAA
chr5	96344525	96344526	chr5:96344526:A:G	rs2910933	A	G	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr5	96344534	96344535	chr5:96344535:C:A	rs2936431	C	A	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr5	96388499	96388500	chr5:96388500:G:A	rs73772387	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	96653082	96653083	chr5:96653083:T:C	rs4400148	T	C	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr5	96715906	96715907	chr5:96715907:C:T	rs563937617	C	T	C	Sox3.mouse_HMG_3	6	1	+	6.896232527754347	13.504183169295146	GCTGAACTTCATTCATA
chr5	96715922	96715923	chr5:96715923:T:C	rs113974305	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr5	96716285	96716286	chr5:96716286:T:G	rs469532	T	G	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr5	96726912	96726913	chr5:96726913:C:T	rs17478897	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr5	96726913	96726914	chr5:96726914:G:A	rs75508776	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr5	96877466	96877467	chr5:96877467:C:A	rs1230361	C	A	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	96904132	96904133	chr5:96904133:G:A	rs2549787	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr5	97086123	97086124	chr5:97086124:G:A	rs865808958	G	A	G	Sox3.mouse_HMG_3	16	1	-	2.184626975296107	3.051553714768386	CATGAATTGTAATAATC
chr5	97118249	97118250	chr5:97118250:C:T	rs1035507	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr5	97617413	97617414	chr5:97617414:C:A	rs9935874	C	A	c	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr5	97936398	97936399	chr5:97936399:T:C	rs73776246	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr5	97936400	97936401	chr5:97936401:T:G	rs17087923	T	G	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	98144359	98144360	chr5:98144360:G:T	rs4315946	G	T	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr5	98634943	98634944	chr5:98634944:T:C	rs1421634	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr5	98648945	98648946	chr5:98648946:T:C	rs139121681	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr5	98680026	98680027	chr5:98680027:A:G	rs10479228	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr5	98784137	98784138	chr5:98784138:A:C	rs2617512	A	C	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr5	98784159	98784160	chr5:98784160:A:G	rs970079	A	G	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr5	98827239	98827240	chr5:98827240:T:G	rs751878	T	G	G	Sox3.mouse_HMG_3	7	1	+	4.294374393652188	5.144407335882259	GTTAAATTGGATTCATA
chr5	98954808	98954809	chr5:98954809:A:G	rs161742	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr5	99187025	99187026	chr5:99187026:A:G	rs73134035	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr5	99256156	99256157	chr5:99256157:T:C	rs1116078	T	C	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr5	99450032	99450033	chr5:99450033:T:C	rs190092100	T	C	.	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr5	99906592	99906593	chr5:99906593:T:C	rs2968274	T	C	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	100122565	100122566	chr5:100122566:T:C	rs4429827	T	C	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	100175467	100175468	chr5:100175468:G:A	rs7730800	G	A	G	Sox3.mouse_HMG_3	3	1	+	6.584985415644214	0.8034205281149844	TTGGAATGCTATTCAAG
chr5	100423551	100423552	chr5:100423552:G:A	rs4703098	G	A	.	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr5	100448411	100448412	chr5:100448412:T:G	rs4703100	T	G	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	100530798	100530799	chr5:100530799:A:G	rs461591	A	G	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	100541320	100541321	chr5:100541321:G:A	rs26031	G	A	A	Sox3.mouse_HMG_3	0	1	-	1.3125969895345433	2.767467634871408	CAGGAATGATATTTAAG
chr5	100613457	100613458	chr5:100613458:C:T	rs9885471	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	100667270	100667271	chr5:100667271:A:C	rs17775441	A	C	A	Sox3.mouse_HMG_3	6	1	-	0.8384769009468829	-5.912574584234588	ACTGATTGCCATGCATG
chr5	100868111	100868112	chr5:100868112:T:C	rs11746550	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	101638933	101638934	chr5:101638934:G:T	rs75764034	G	T	G	Sox3.mouse_HMG_3	4	1	+	2.1706467549657296	1.9460228184810857	TGAGGATGCTATTCATT
chr5	101643189	101643190	chr5:101643190:T:G	rs2061861	T	G	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr5	101675992	101675993	chr5:101675993:G:C	rs66956014	G	C	G	Sox3.mouse_HMG_3	13	1	-	2.085672249050398	-4.521588361411623	AGTAAATGTGAGTCATG
chr5	101786883	101786884	chr5:101786884:T:C	rs1479078	T	C	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr5	102226686	102226687	chr5:102226687:T:C	rs425765	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr5	102407998	102407999	chr5:102407999:T:C	rs1376899	T	C	T	Sox3.mouse_HMG_3	11	1	+	8.96078401491883	2.8761731888168827	AATGAGTGTTATTCAAA
chr5	102617411	102617412	chr5:102617412:C:T	rs10067699	C	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	102750214	102750215	chr5:102750215:C:G	rs441226	C	G	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr5	102856561	102856562	chr5:102856562:G:C	rs558675721	G	C	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr5	102902063	102902064	chr5:102902064:T:A	rs17154813	T	A	T	Sox3.mouse_HMG_3	5	1	-	1.5939463441855068	-5.013494320293204	GTTAAATGTCTGTCATA
chr5	102970617	102970618	chr5:102970618:G:A	rs12652973	G	A	G	Sox3.mouse_HMG_3	2	1	+	9.364407266010303	10.386058513542284	GAGGAATGGCATTCAGA
chr5	103118734	103118735	chr5:103118735:C:T	rs34781	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	103122408	103122409	chr5:103122409:C:G	rs34786	C	G	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr5	103271883	103271884	chr5:103271884:A:T	rs35802	A	T	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr5	103435286	103435287	chr5:103435287:A:G	rs2115251	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr5	103441318	103441319	chr5:103441319:C:T	rs10479253	C	T	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr5	103569488	103569489	chr5:103569489:A:T	rs294054	A	T	a	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr5	103569499	103569500	chr5:103569500:G:A	rs556322806	G	A	g	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr5	103636338	103636339	chr5:103636339:C:T	rs57834247	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr5	104053135	104053136	chr5:104053136:A:T	rs56289164	A	T	G	Sox3.mouse_HMG_3	2	1	-	3.9276046302425476	-1.799724084097075	GATGAATTATAATTATT
chr5	104147499	104147500	chr5:104147500:A:G	rs139938108	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	104223400	104223401	chr5:104223401:G:A	rs9686541	G	A	A	Sox3.mouse_HMG_3	13	1	-	3.3623625596689752	-3.2448980507930454	CATGTATTATATACATG
chr5	104547171	104547172	chr5:104547172:T:C	rs7706890	T	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	104733167	104733168	chr5:104733168:G:A	rs62361863	G	A	G	Sox3.mouse_HMG_3	13	1	-	1.5975399244300734	-5.0097206860319465	CATGAACTGCATCCAAA
chr5	104817890	104817891	chr5:104817891:G:A	rs715375	G	A	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr5	104886776	104886777	chr5:104886777:A:C	rs3106500	A	C	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr5	105266063	105266064	chr5:105266064:C:T	rs74949901	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr5	105448700	105448701	chr5:105448701:T:C	rs10073707	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr5	105498315	105498316	chr5:105498316:G:T	rs746040375	G	T	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	105689074	105689075	chr5:105689075:T:C	rs13169693	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr5	106047478	106047479	chr5:106047479:G:T	rs75252900	G	T	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr5	106072961	106072962	chr5:106072962:T:C	rs142214697	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr5	106307274	106307275	chr5:106307275:T:G	rs4637521	T	G	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr5	106521493	106521494	chr5:106521494:A:G	rs7701553	A	G	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr5	106646355	106646356	chr5:106646356:C:T	rs28510213	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr5	106698014	106698015	chr5:106698015:A:G	rs6596693	A	G	A	Sox3.mouse_HMG_3	11	1	-	1.5685841613889828	-4.516026664712963	GGGGAATTACATGCATG
chr5	106796303	106796304	chr5:106796304:T:C	rs73200401	T	C	T	Sox3.mouse_HMG_3	15	1	+	1.3669571775450455	-3.347436234170023	AGAGAATGCTAGTAATG
chr5	106875194	106875195	chr5:106875195:G:A	rs78339743	G	A	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr5	107030513	107030514	chr5:107030514:T:C	rs4264928	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	107122827	107122828	chr5:107122828:T:G	rs114117784	T	G	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr5	107337684	107337685	chr5:107337685:T:C	rs444702	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr5	107425470	107425471	chr5:107425471:T:C	chr5:107425471:T:C	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr5	107459441	107459442	chr5:107459442:T:A	rs12523318	T	A	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr5	107459490	107459491	chr5:107459491:T:C	rs3844750	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr5	107665161	107665162	chr5:107665162:G:C	rs74415514	G	C	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr5	107982752	107982753	chr5:107982753:C:T	rs288194	C	T	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr5	108036699	108036700	chr5:108036700:A:G	rs137893808	A	G	A	Sox3.mouse_HMG_3	9	1	-	2.11178807075017	2.104151393758422	GATGAATGGTAGCCGGA
chr5	108168425	108168426	chr5:108168426:G:A	rs34422	G	A	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	108340516	108340517	chr5:108340517:T:C	rs72793334	T	C	T	Sox3.mouse_HMG_3	12	1	+	1.701893061879815	-4.490960505520951	CAAGAATTACATTCTAG
chr5	108641416	108641417	chr5:108641417:A:C	rs67718253	A	C	A	Sox3.mouse_HMG_3	7	1	-	6.942900211658214	7.792933153888286	CATGCATTTCATTCAAA
chr5	109409142	109409143	chr5:109409143:C:A	rs75761375	C	A	A	Sox3.mouse_HMG_3	8	1	-	5.400574165633742	4.695671752039704	GATGACTGGTAATCATT
chr5	109656763	109656764	chr5:109656764:A:G	rs25916	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	109707527	109707528	chr5:109707528:C:T	rs12656748	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr5	109786754	109786755	chr5:109786755:T:C	rs76001272	T	C	T	Sox3.mouse_HMG_3	5	1	-	8.412430200642241	1.9235952785713768	AATGAATAGTAGTCATC
chr5	110262828	110262829	chr5:110262829:C:G	rs6864455	C	G	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	110321367	110321368	chr5:110321368:G:C	rs13167376	G	C	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	110376772	110376773	chr5:110376773:G:A	rs115518504	G	A	G	Sox3.mouse_HMG_3	7	1	+	1.9482225595783798	-4.605326155079347	ATGGAATGGTTTTCATA
chr5	110845537	110845538	chr5:110845538:T:G	rs10447257	T	G	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr5	110916779	110916780	chr5:110916780:G:A	rs17132507	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	111131375	111131376	chr5:111131376:A:G	rs1457113	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr5	111144604	111144605	chr5:111144605:T:C	rs7734269	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr5	111154392	111154393	chr5:111154393:C:G	chr5:111154393:C:G	C	G	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr5	111232885	111232886	chr5:111232886:G:C	rs56197011	G	C	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr5	111448090	111448091	chr5:111448091:A:C	rs952118718	A	C	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	111476683	111476684	chr5:111476684:C:T	rs31621	C	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	111698519	111698520	chr5:111698520:A:G	rs26052	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr5	111848736	111848737	chr5:111848737:A:G	rs6882628	A	G	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr5	111869867	111869868	chr5:111869868:A:G	rs74555799	A	G	A	Sox3.mouse_HMG_3	15	1	-	3.4788709844933265	-1.2355224272217415	CAAGAAATTCATTCATA
chr5	111917571	111917572	chr5:111917572:T:C	rs12520308	T	C	C	Sox3.mouse_HMG_3	10	1	-	3.6217620513586786	-2.9861885901821186	GATGGATTACATTTATT
chr5	111974572	111974573	chr5:111974573:A:G	rs2279652	A	G	A	Sox3.mouse_HMG_3	11	1	-	2.4586173722085265	-3.625993453893418	AATTAATGTCATACAAG
chr5	112197088	112197089	chr5:112197089:T:A	rs80158387	T	A	T	Sox3.mouse_HMG_3	10	1	-	2.083670164354454	-4.667381320827016	AATGAAAGTCATTGAAA
chr5	112263698	112263699	chr5:112263699:C:A	rs75442414	C	A	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr5	112315956	112315957	chr5:112315957:C:A	rs75415287	C	A	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr5	112333014	112333015	chr5:112333015:T:C	rs12517378	T	C	T	Sox3.mouse_HMG_3	2	1	+	2.045459091832911	-4.5604200263980195	CATAAATTGCATTTAAG
chr5	112476287	112476288	chr5:112476288:G:T	rs72797814	G	T	G	Sox3.mouse_HMG_3	10	1	-	1.3725325379977884	8.123584023179259	AGTGACTGATCTTCATG
chr5	112492199	112492200	chr5:112492200:A:G	rs341325	A	G	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	112552390	112552391	chr5:112552391:A:G	rs58167369	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	112596475	112596476	chr5:112596476:G:T	rs6594627	G	T	T	Sox3.mouse_HMG_3	11	1	+	1.9829838539531095	3.4174199542489156	TATGAGTTGCAGCCATC
chr5	112708315	112708316	chr5:112708316:T:C	rs141935736	T	C	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	112983414	112983415	chr5:112983415:T:A	rs33549	T	A	t	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr5	113082209	113082210	chr5:113082210:G:A	rs6859485	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr5	113150566	113150567	chr5:113150567:T:C	rs79406686	T	C	T	Sox3.mouse_HMG_3	15	1	+	2.324084956064653	-2.3903084556504153	AATGCATTTCAGTAATG
chr5	113166085	113166086	chr5:113166086:A:G	rs12654269	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.8831983140874866	-2.8311950976275817	GGGGAATGGTAGACATG
chr5	113166103	113166104	chr5:113166104:T:C	rs12652257	T	C	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr5	113218345	113218346	chr5:113218346:C:T	rs114422833	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr5	113279346	113279347	chr5:113279347:G:A	rs13190054	G	A	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr5	113295297	113295298	chr5:113295298:C:T	rs565170095	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr5	113295299	113295300	chr5:113295300:T:C	rs116785475	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr5	113344375	113344376	chr5:113344376:C:A	rs34625553	C	A	C	Sox3.mouse_HMG_3	3	1	-	3.6912450559302385	-3.2152494285844746	GAAGAATTGCAGTCTTT
chr5	113400994	113400995	chr5:113400995:G:T	rs11241206	G	T	G	Sox3.mouse_HMG_3	7	1	+	4.210069391671931	3.3600364494418598	TATGTAAGGCAGTCATG
chr5	113625104	113625105	chr5:113625105:A:C	rs12719164	A	C	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	113687021	113687022	chr5:113687022:C:G	rs1529462	C	G	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	113950625	113950626	chr5:113950626:C:T	rs17340025	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr5	114063625	114063626	chr5:114063626:G:A	rs13185767	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr5	114301964	114301965	chr5:114301965:A:G	rs17430083	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr5	114497726	114497727	chr5:114497727:G:A	rs1834400	G	A	A	Sox3.mouse_HMG_3	13	1	-	1.1476261764367575	-5.459634434025262	CATGAATGGGCTTCAGT
chr5	114685041	114685042	chr5:114685042:G:C	rs116252606	G	C	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	114912689	114912690	chr5:114912690:G:T	rs10478203	G	T	G	Sox3.mouse_HMG_3	6	1	-	6.188711334174685	6.045610490534012	TGTGAACTGTATTCAAG
chr5	115056710	115056711	chr5:115056711:C:A	rs4235768	C	A	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	115214733	115214734	chr5:115214734:T:A	rs180938557	T	A	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	115271894	115271895	chr5:115271895:G:A	rs75742647	G	A	G	Sox3.mouse_HMG_3	0	1	-	1.2135840260541255	2.6684546713909896	CATGAGTTGTAGTCCTT
chr5	115351431	115351432	chr5:115351432:T:C	rs57239247	T	C	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	115448355	115448356	chr5:115448356:G:C	rs790666	G	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr5	115489970	115489971	chr5:115489971:T:C	rs6887979	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr5	115625365	115625366	chr5:115625366:A:T	rs73782726	A	T	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr5	115636240	115636241	chr5:115636241:G:A	rs256953	G	A	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr5	115648249	115648250	chr5:115648250:C:G	rs7723429	C	G	g	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr5	115653260	115653261	chr5:115653261:G:T	rs13164059	G	T	t	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr5	115814827	115814828	chr5:115814828:T:G	rs26531	T	G	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr5	115938538	115938539	chr5:115938539:T:C	rs17138436	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr5	116095007	116095008	chr5:116095008:T:C	rs9687859	T	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr5	116256884	116256885	chr5:116256885:C:T	rs10073364	C	T	C	Sox3.mouse_HMG_3	2	1	-	2.1343336764838114	3.1559849240157924	CAGGAATGACAGTGATG
chr5	116265378	116265379	chr5:116265379:G:A	rs37179	G	A	G	Sox3.mouse_HMG_3	8	1	+	2.1358618656396073	1.5127452184617936	TCAGAATTGTAATCATA
chr5	116273251	116273252	chr5:116273252:A:G	rs4337887	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	116386793	116386794	chr5:116386794:G:A	rs7703121	G	A	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr5	116447856	116447857	chr5:116447857:C:T	rs17139805	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr5	116447900	116447901	chr5:116447901:G:A	rs139130681	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr5	116518899	116518900	chr5:116518900:C:G	rs1553530	C	G	g	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr5	116575671	116575672	chr5:116575672:C:T	rs149814862	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr5	116843177	116843178	chr5:116843178:C:T	rs13180934	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	116944933	116944934	chr5:116944934:C:T	rs73266918	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	117096310	117096311	chr5:117096311:T:C	rs73260816	T	C	C	Sox3.mouse_HMG_3	15	1	+	6.447286568678111	1.7328931569630428	CCTGAGTGCTATTCATG
chr5	117244698	117244699	chr5:117244699:A:G	rs73783751	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr5	118548992	118548993	chr5:118548993:A:T	rs145389132	A	T	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	119050081	119050082	chr5:119050082:C:G	rs11954738	C	G	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr5	119050082	119050083	chr5:119050083:T:A	rs11958239	T	A	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	119272463	119272464	chr5:119272464:G:A	rs75304199	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr5	119272479	119272480	chr5:119272480:G:A	rs13361153	G	A	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	119987194	119987195	chr5:119987195:T:G	rs255799	T	G	T	Sox3.mouse_HMG_3	10	1	-	3.6877631390016195	-3.063288346179852	GGCGAATTCTAGTCAGA
chr5	120160362	120160363	chr5:120160363:T:C	rs145031237	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr5	120446127	120446128	chr5:120446128:T:C	chr5:120446128:T:C	T	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr5	120447227	120447228	chr5:120447228:C:T	rs73785926	C	T	C	Sox3.mouse_HMG_3	4	1	+	1.1913756054046885	1.3344764490453618	TATGCAGGGTATTCAAC
chr5	120517262	120517263	chr5:120517263:A:G	rs17491078	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	120644601	120644602	chr5:120644602:C:T	rs62377787	C	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr5	120649607	120649608	chr5:120649608:G:A	rs11949516	G	A	G	Sox3.mouse_HMG_3	7	1	+	4.9642718385809	-1.5892768760768288	ACTGAATGACATTAAAA
chr5	121252756	121252757	chr5:121252757:A:C	rs654262	A	C	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr5	121366708	121366709	chr5:121366709:A:T	rs7705198	A	T	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr5	121366714	121366715	chr5:121366715:G:C	rs112237220	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	121631322	121631323	chr5:121631323:C:T	rs4574579	C	T	T	Sox3.mouse_HMG_3	0	1	-	6.712156266569612	5.886872365423267	GTTGAATTTTGGTCATG
chr5	121706809	121706810	chr5:121706810:G:C	rs12656268	G	C	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr5	121784297	121784298	chr5:121784298:G:C	rs6899041	G	C	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr5	121963090	121963091	chr5:121963091:G:T	rs77298376	G	T	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr5	121963099	121963100	chr5:121963100:A:C	rs113476723	A	C	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr5	122181989	122181990	chr5:122181990:T:C	rs115937779	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.931855928494512	-0.16827400794278113	GATGAATTATATCCTAA
chr5	122190391	122190392	chr5:122190392:C:A	rs144914388	C	A	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr5	122316829	122316830	chr5:122316830:G:A	rs7701494	G	A	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	122385407	122385408	chr5:122385408:A:G	rs192510830	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	122493299	122493300	chr5:122493300:A:C	rs963083457	A	C	A	Sox3.mouse_HMG_3	9	1	-	1.287154364944403	-4.060411319421907	ACTGGCTGGTATTCATG
chr5	122649342	122649343	chr5:122649343:C:T	rs11241653	C	T	C	Sox3.mouse_HMG_3	2	1	-	4.104029908694065	5.125681156226046	GAGGAATTGCATTCTTT
chr5	122869949	122869950	chr5:122869950:G:A	rs59410349	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr5	122907028	122907029	chr5:122907029:C:T	rs112801206	C	T	C	Sox3.mouse_HMG_3	1	1	-	4.449009205094852	7.549139141532146	AGTCAATGTTATTCAAT
chr5	122907036	122907037	chr5:122907037:G:T	rs34844238	G	T	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr5	123000339	123000340	chr5:123000340:G:A	rs6866400	G	A	G	Sox3.mouse_HMG_3	13	1	-	2.2019926905910268	-4.405267919870993	TATGAATTTTGTTCGAG
chr5	123276492	123276493	chr5:123276493:C:T	rs11739802	C	T	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr5	123422472	123422473	chr5:123422473:A:T	rs62377766	A	T	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr5	123784118	123784119	chr5:123784119:G:A	rs4836040	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr5	123803356	123803357	chr5:123803357:A:G	rs10059555	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr5	123820159	123820160	chr5:123820160:A:G	rs257014	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr5	123820165	123820166	chr5:123820166:A:G	rs117799513	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr5	123845422	123845423	chr5:123845423:G:A	rs34744654	G	A	A	Sox3.mouse_HMG_3	5	1	-	1.0301903121521332	1.0301903121521332	GTTGACTGCCTGTCATA
chr5	123878510	123878511	chr5:123878511:G:A	rs1909996	G	A	G	Sox3.mouse_HMG_3	6	1	-	1.0130662786865259	7.621016920227324	GTTGAACGGCATGCAAA
chr5	123975911	123975912	chr5:123975912:A:G	rs59372219	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr5	124043452	124043453	chr5:124043453:G:C	rs10478600	G	C	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr5	124126560	124126561	chr5:124126561:T:C	rs6873606	T	C	C	Sox3.mouse_HMG_3	14	1	-	9.138056470240151	2.7561103038132417	TTTGAATTTGATTCATG
chr5	124289627	124289628	chr5:124289628:G:T	chr5:124289628:G:T	G	T	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr5	124316256	124316257	chr5:124316257:A:T	rs17151579	A	T	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr5	124456434	124456435	chr5:124456435:A:G	rs60733790	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr5	124463284	124463285	chr5:124463285:G:A	rs4574539	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr5	124624753	124624754	chr5:124624754:G:A	rs6871217	G	A	G	Sox3.mouse_HMG_3	11	1	+	1.7315697394873004	-2.9186049863188375	AATGACTGGTAGGCAAA
chr5	124662281	124662282	chr5:124662282:C:T	rs10042129	C	T	C	Sox3.mouse_HMG_3	13	1	+	1.4417182771545944	-5.1655423333074255	GAGGAATTCAAGTCAAA
chr5	124839479	124839480	chr5:124839480:A:G	rs75439582	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr5	124839564	124839565	chr5:124839565:A:G	rs75874734	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr5	124952430	124952431	chr5:124952431:C:T	rs114764957	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr5	124980337	124980338	chr5:124980338:C:T	rs4357030	C	T	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	125002974	125002975	chr5:125002975:T:A	rs4240387	T	A	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr5	125137741	125137742	chr5:125137742:T:A	rs114517684	T	A	T	Sox3.mouse_HMG_3	5	1	-	1.2747620645770856	-5.332678599901626	GAAGAATGGTAACCATG
chr5	125137762	125137763	chr5:125137763:G:A	rs72787490	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr5	125299154	125299155	chr5:125299155:T:C	rs11957587	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr5	125316712	125316713	chr5:125316713:G:A	rs7721712	G	A	G	Sox3.mouse_HMG_3	13	1	-	0.874898090515208	-5.732362519946813	TTTTAATGCTAGTCGTG
chr5	125316713	125316714	chr5:125316714:A:G	rs62373358	A	G	A	Sox3.mouse_HMG_3	12	1	-	0.874898090515208	-5.317955476885559	TTTTAATGCTAGTCGTG
chr5	125317190	125317191	chr5:125317191:C:T	rs17463085	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr5	125373205	125373206	chr5:125373206:A:G	rs1517809	A	G	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr5	125424662	125424663	chr5:125424663:G:A	rs35658248	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr5	125894613	125894614	chr5:125894614:G:A	rs115062595	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr5	125977120	125977121	chr5:125977121:C:A	rs1432354	C	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	125979592	125979593	chr5:125979593:T:A	rs444610	T	A	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr5	126222138	126222139	chr5:126222139:G:A	rs138785810	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr5	126403111	126403112	chr5:126403112:A:C	rs2112480	A	C	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr5	126433206	126433207	chr5:126433207:G:A	rs34781836	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr5	126596735	126596736	chr5:126596736:C:T	rs186759885	C	T	C	Sox3.mouse_HMG_3	3	1	+	3.0295114025120222	2.8725076537023577	GATCAATTTCTTTCATT
chr5	126697174	126697175	chr5:126697175:G:T	rs77423366	G	T	G	Sox3.mouse_HMG_3	9	1	-	3.6053032531370217	-2.448915371371297	GGGAAATGGCATTCATA
chr5	126817052	126817053	chr5:126817053:C:A	rs2973603	C	A	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr5	127002172	127002173	chr5:127002173:G:A	rs74514577	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr5	127002206	127002207	chr5:127002207:A:G	rs73786290	A	G	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	127002222	127002223	chr5:127002223:G:T	rs150799427	G	T	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr5	127097553	127097554	chr5:127097554:C:T	rs76581668	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr5	127275249	127275250	chr5:127275250:A:C	rs59762062	A	C	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr5	127299627	127299628	chr5:127299628:C:A	rs189889369	C	A	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	127320037	127320038	chr5:127320038:G:C	rs246886	G	C	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr5	127320056	127320057	chr5:127320057:C:T	rs246887	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr5	127506110	127506111	chr5:127506111:A:G	rs151273	A	G	G	Sox3.mouse_HMG_3	14	1	+	3.9254172283132034	-2.456528938113708	AATAAATGTTGGTCATG
chr5	127564252	127564253	chr5:127564253:G:A	rs74706298	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr5	127698157	127698158	chr5:127698158:G:T	rs1234542	G	T	G	Sox3.mouse_HMG_3	0	1	+	-0.056834206635725026	-0.3257550604354791	GATGGAAGCCAGTCAAC
chr5	127891883	127891884	chr5:127891884:G:C	rs151852	G	C	N	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr5	128513855	128513856	chr5:128513856:C:G	chr5:128513856:C:G	C	G	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr5	128513859	128513860	chr5:128513860:T:C	chr5:128513860:T:C	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	128626604	128626605	chr5:128626605:A:G	rs13185878	A	G	G	Sox3.mouse_HMG_3	16	1	+	1.6398058376213733	1.675746294073899	AATGCATGTCATCCAGA
chr5	128629353	128629354	chr5:128629354:A:T	rs13173006	A	T	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr5	128646034	128646035	chr5:128646035:A:G	rs4351202	A	G	G	Sox3.mouse_HMG_3	0	1	+	1.72874400665913	2.554027907805474	AATCAATTCAAGTCATT
chr5	128750262	128750263	chr5:128750263:C:A	rs137974904	C	A	C	Sox3.mouse_HMG_3	12	1	-	2.1995541286764544	8.580628974998366	AATGAATGGTCTGCAGG
chr5	128989331	128989332	chr5:128989332:T:G	rs7730969	T	G	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr5	129095729	129095730	chr5:129095730:G:A	rs73232500	G	A	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr5	129130188	129130189	chr5:129130189:T:G	rs76601561	T	G	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr5	129383138	129383139	chr5:129383139:C:T	rs17165195	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	129508709	129508710	chr5:129508710:C:T	rs10071253	C	T	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr5	129664511	129664512	chr5:129664512:G:T	rs985880609	G	T	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr5	129849015	129849016	chr5:129849016:C:A	rs413699	C	A	a	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr5	130099057	130099058	chr5:130099058:A:G	rs2863821	A	G	G	Sox3.mouse_HMG_3	15	1	-	2.046180840286927	-2.6682125714281413	TATCAATTACAGACATT
chr5	130138577	130138578	chr5:130138578:C:G	rs185811409	C	G	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr5	130138604	130138605	chr5:130138605:T:G	rs62393193	T	G	T	Sox3.mouse_HMG_3	5	1	-	2.2074312131978022	-4.4000094512809085	AATGAAATGTATTCTAG
chr5	130289413	130289414	chr5:130289414:G:C	rs1990022	G	C	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr5	130590348	130590349	chr5:130590349:C:T	rs72797733	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr5	130815372	130815373	chr5:130815373:C:T	rs72801714	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr5	130854807	130854808	chr5:130854808:T:C	rs12653266	T	C	T	Sox3.mouse_HMG_3	7	1	+	7.364894487888426	1.961483307911108	AATGAAGTGTAGTCATC
chr5	130980866	130980867	chr5:130980867:T:C	rs2419936	T	C	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	131797929	131797930	chr5:131797930:G:A	rs111664258	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr5	132004338	132004339	chr5:132004339:C:T	rs10074490	C	T	C	Sox3.mouse_HMG_3	8	1	-	2.1444496383003955	1.5213329911225817	TCTGAGTGGCATCCATG
chr5	132079372	132079373	chr5:132079373:G:C	rs25886	G	C	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr5	132179719	132179720	chr5:132179720:C:T	rs101194	C	T	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr5	132202924	132202925	chr5:132202925:A:T	rs76029035	A	T	A	Sox3.mouse_HMG_3	2	1	-	2.0707947396276314	-3.6565339747119934	TCTGATTTTCAGTCAGA
chr5	132395413	132395414	chr5:132395414:C:T	rs62385689	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr5	132678096	132678097	chr5:132678097:G:A	rs2243266	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr5	132799679	132799680	chr5:132799680:T:C	rs256869	T	C	T	Sox3.mouse_HMG_3	15	1	+	5.959604582323667	1.245211170608599	GAGGAATGCCACTCATA
chr5	133203790	133203791	chr5:133203791:T:C	rs4533941	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr5	133386910	133386911	chr5:133386911:A:G	rs17685127	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr5	133514644	133514645	chr5:133514645:A:G	rs116577322	A	G	A	Sox3.mouse_HMG_3	2	1	-	3.6492280889053412	-2.95665102932559	GATGAATGCTTTTAATC
chr5	133795013	133795014	chr5:133795014:T:A	rs6421904	T	A	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr5	134276115	134276116	chr5:134276116:C:G	rs326626	C	G	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr5	134506369	134506370	chr5:134506370:C:A	rs190603843	C	A	C	Sox3.mouse_HMG_3	12	1	+	4.979125411522635	5.059168119196172	GGTGAATGCCAGCCAGG
chr5	135025371	135025372	chr5:135025372:G:A	rs28415457	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr5	135047131	135047132	chr5:135047132:C:G	rs72800402	C	G	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr5	135047139	135047140	chr5:135047140:T:C	rs254554	T	C	T	Sox3.mouse_HMG_3	6	1	+	1.6262292416648612	-4.981721399875937	TCTGGATGCTATTCTTG
chr5	135072575	135072576	chr5:135072576:G:C	rs12517780	G	C	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr5	135153633	135153634	chr5:135153634:C:T	rs617409	C	T	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr5	135211287	135211288	chr5:135211288:C:T	rs150593879	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr5	135239066	135239067	chr5:135239067:C:T	rs141691356	C	T	C	Sox3.mouse_HMG_3	8	1	-	1.9713150465991465	1.3481983994213333	GGTAAATTGCATTCCTT
chr5	135332640	135332641	chr5:135332641:C:T	rs2134147	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr5	135636474	135636475	chr5:135636475:G:A	rs112800818	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr5	135693704	135693705	chr5:135693705:T:C	rs4246783	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	135723338	135723339	chr5:135723339:C:G	rs13190526	C	G	G	Sox3.mouse_HMG_3	13	1	+	4.331400910064742	-2.2758597003972776	TCTGAATGGTATCCAGT
chr5	135877368	135877369	chr5:135877369:G:T	rs13354479	G	T	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr5	135993664	135993665	chr5:135993665:A:G	rs30741	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr5	136046551	136046552	chr5:136046552:G:A	rs3749786	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr5	136063492	136063493	chr5:136063493:C:A	rs17169782	C	A	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr5	136188055	136188056	chr5:136188056:T:C	rs3734125	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr5	136211554	136211555	chr5:136211555:A:G	rs11743293	A	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	137102082	137102083	chr5:137102083:C:T	rs1160840	C	T	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr5	137128121	137128122	chr5:137128122:A:G	rs2905975	A	G	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	137218894	137218895	chr5:137218895:A:G	rs181343415	A	G	A	Sox3.mouse_HMG_3	8	1	-	4.322550533490857	4.584670278406963	GATGATTTTCTTTCATA
chr5	137252401	137252402	chr5:137252402:A:G	rs114647932	A	G	A	Sox3.mouse_HMG_3	5	1	+	6.630744231563888	0.14190930949302283	CGTGGATGGCAGTCATG
chr5	137273912	137273913	chr5:137273913:T:C	rs17171273	T	C	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	137595942	137595943	chr5:137595943:G:A	rs2189083	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr5	137622602	137622603	chr5:137622603:C:A	rs142046053	C	A	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr5	137625481	137625482	chr5:137625482:G:A	rs11950275	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr5	138180091	138180092	chr5:138180092:G:C	rs10038448	G	C	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr5	138815047	138815048	chr5:138815048:T:G	rs4835703	T	G	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	139020273	139020274	chr5:139020274:G:T	rs10075951	G	T	T	Sox3.mouse_HMG_3	7	1	+	4.74269356016661	3.8926606179365386	GCTGAATGCCTTTCAGA
chr5	139050106	139050107	chr5:139050107:C:T	rs6882583	C	T	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr5	139283107	139283108	chr5:139283108:T:G	rs877826	T	G	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr5	139292549	139292550	chr5:139292550:C:G	rs140057995	C	G	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr5	139504088	139504089	chr5:139504089:T:C	rs145530582	T	C	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr5	140164976	140164977	chr5:140164977:G:A	rs156082	G	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr5	141611578	141611579	chr5:141611579:A:C	rs77737136	A	C	a	Sox3.mouse_HMG_3	14	1	+	1.2254695812096619	-5.1564765852172485	AATGAAAGACAGACAAA
chr5	141725791	141725792	chr5:141725792:T:C	rs114804753	T	C	t	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr5	141954488	141954489	chr5:141954489:A:G	rs164086	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	141956698	141956699	chr5:141956699:G:T	rs164075	G	T	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr5	142028801	142028802	chr5:142028802:A:G	rs72796098	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr5	142028805	142028806	chr5:142028806:T:C	rs153154	T	C	C	Sox3.mouse_HMG_3	14	1	-	7.890113533092077	1.508167366665165	AATGAATTCTATACAGA
chr5	142060949	142060950	chr5:142060950:C:T	rs252148	C	T	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr5	142341679	142341680	chr5:142341680:G:T	rs930892	G	T	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr5	142568320	142568321	chr5:142568321:C:T	rs13355152	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr5	142877059	142877060	chr5:142877060:G:A	rs114543421	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr5	143026194	143026195	chr5:143026195:T:C	rs12188243	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr5	143026226	143026227	chr5:143026227:C:A	rs112767667	C	A	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr5	143106456	143106457	chr5:143106457:T:G	rs74292672	T	G	T	Sox3.mouse_HMG_3	5	1	-	2.172000733807362	-4.435439930671349	AATGCATTGTATTCCAA
chr5	143172960	143172961	chr5:143172961:T:C	rs17209139	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr5	143406073	143406074	chr5:143406074:T:C	rs72557305	T	C	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr5	143471822	143471823	chr5:143471823:C:T	rs75508794	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	143782770	143782771	chr5:143782771:C:T	rs723677	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	143792990	143792991	chr5:143792991:G:A	rs13180110	G	A	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr5	143827534	143827535	chr5:143827535:T:A	rs2161116	T	A	A	Sox3.mouse_HMG_3	1	1	+	2.1950207682364065	5.1650975764255	TTTGAATGTCTTTCTTG
chr5	143895190	143895191	chr5:143895191:T:C	rs2112195	T	C	T	Sox3.mouse_HMG_3	0	1	+	4.022448561595761	2.5675779162588963	TATGAATGTATGTCATA
chr5	143896980	143896981	chr5:143896981:A:G	rs72795642	A	G	G	Sox3.mouse_HMG_3	15	1	-	4.664207617329407	-0.05018579438566073	TATAAATGTCAGTCCTA
chr5	144017531	144017532	chr5:144017532:A:G	rs77864057	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr5	144027544	144027545	chr5:144027545:T:C	rs411200	T	C	C	Sox3.mouse_HMG_3	1	1	-	11.081830571467211	7.981700635029918	AATAAATTTTATTCATA
chr5	144121878	144121879	chr5:144121879:C:A	rs143651641	C	A	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	144177434	144177435	chr5:144177435:A:G	rs1113686	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr5	144357245	144357246	chr5:144357246:G:C	rs184942	G	C	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr5	144359431	144359432	chr5:144359432:G:A	rs13187326	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	144645502	144645503	chr5:144645503:T:G	rs185438	T	G	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	145013923	145013924	chr5:145013924:G:A	rs36031558	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	145203496	145203497	chr5:145203497:A:T	rs35282350	A	T	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr5	145635600	145635601	chr5:145635601:G:C	rs73313746	G	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	145923460	145923461	chr5:145923461:C:T	rs79956300	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	145938934	145938935	chr5:145938935:C:A	rs73792742	C	A	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr5	145939049	145939050	chr5:145939050:A:G	rs73792743	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	146051866	146051867	chr5:146051867:G:A	rs173586	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr5	146182718	146182719	chr5:146182719:G:T	rs13186701	G	T	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr5	146182728	146182729	chr5:146182729:A:G	chr5:146182729:A:G	A	G	A	Sox3.mouse_HMG_3	16	1	-	2.5675350504866286	1.7006083110143497	TGGGAATTGTAGTCAGT
chr5	146182756	146182757	chr5:146182757:G:A	rs901781149	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr5	146321787	146321788	chr5:146321788:A:G	rs6864357	A	G	G	Sox3.mouse_HMG_3	14	1	+	4.852871348335878	-1.5290748180910327	GATGGAATCTATTCATG
chr5	146545371	146545372	chr5:146545372:G:T	rs7709368	G	T	g	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr5	146592529	146592530	chr5:146592530:T:C	rs10515574	T	C	C	Sox3.mouse_HMG_3	14	1	-	7.23249432629925	0.8505481598723379	ACTGAATTCTAGTCAAC
chr5	146650120	146650121	chr5:146650121:A:G	rs543739507	A	G	A	Sox3.mouse_HMG_3	1	1	+	4.624408264942165	1.5242783285048707	AATAAATGTCAGTCACT
chr5	146657473	146657474	chr5:146657474:C:T	rs462664	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr5	146724888	146724889	chr5:146724889:G:T	rs13340393	G	T	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	146920590	146920591	chr5:146920591:T:C	rs319161	T	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr5	146940442	146940443	chr5:146940443:A:C	rs1036204	A	C	A	Sox3.mouse_HMG_3	10	1	+	8.275859347221317	1.5248078620398469	TAAGAATGCCAGTCAGG
chr5	146966334	146966335	chr5:146966335:C:T	rs200812354	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr5	147081440	147081441	chr5:147081441:G:A	rs568577969	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr5	147224063	147224064	chr5:147224064:A:G	rs116415196	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	147407701	147407702	chr5:147407702:A:T	rs7714137	A	T	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr5	147455413	147455414	chr5:147455414:A:G	rs72833351	A	G	A	Sox3.mouse_HMG_3	5	1	+	4.063700233636539	-2.4251346884343237	GATGAATGCCAAGCAAA
chr5	147484481	147484482	chr5:147484482:G:A	rs1243317734	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr5	147516819	147516820	chr5:147516820:G:A	rs6580467	G	A	G	Sox3.mouse_HMG_3	8	1	+	2.277645507219354	1.6545288600415409	AAAGAAAGGTAGTCAAG
chr5	147621129	147621130	chr5:147621130:T:G	rs2304038	T	G	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr5	147691307	147691308	chr5:147691308:C:G	rs72835145	C	G	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr5	147764354	147764355	chr5:147764355:G:A	rs776789404	G	A	G	Sox3.mouse_HMG_3	1	1	-	5.311894474934219	6.518677180601019	TCTGAATTCCTGTCATA
chr5	147781355	147781356	chr5:147781356:G:T	rs2436425	G	T	G	Sox3.mouse_HMG_3	13	1	-	7.391411292365563	1.0087746183881872	GGTGAAATGTATTCATT
chr5	147788395	147788396	chr5:147788396:T:C	rs7736356	T	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr5	147902641	147902642	chr5:147902642:T:C	rs10035311	T	C	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr5	148455098	148455099	chr5:148455099:C:G	rs116612619	C	G	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	148627382	148627383	chr5:148627383:C:A	rs35990035	C	A	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr5	148745446	148745447	chr5:148745447:T:C	rs59598688	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr5	148819435	148819436	chr5:148819436:C:T	rs4705059	C	T	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr5	148819440	148819441	chr5:148819441:G:A	rs4705060	G	A	G	Sox3.mouse_HMG_3	1	1	+	0.777016702055978	3.8771466384932696	TGGTAATGGCAGTCATA
chr5	148912779	148912780	chr5:148912780:C:T	rs74666686	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	148961157	148961158	chr5:148961158:A:C	rs4513681	A	C	C	Sox3.mouse_HMG_3	10	1	+	1.6989320909920345	-5.052119394189435	AATGAAAAGTATTCAAT
chr5	149133860	149133861	chr5:149133861:G:T	rs79239742	G	T	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr5	149230164	149230165	chr5:149230165:C:T	rs2918266	C	T	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr5	149367728	149367729	chr5:149367729:C:T	rs767945775	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	149394173	149394174	chr5:149394174:G:C	rs6874589	G	C	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr5	149472532	149472533	chr5:149472533:G:T	rs62377964	G	T	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr5	149473600	149473601	chr5:149473601:G:C	rs17654062	G	C	G	Sox3.mouse_HMG_3	0	1	-	1.4393695763905199	3.1631610755271393	CGTGAATGCCAGGCACA
chr5	149524528	149524529	chr5:149524529:A:T	rs10058728	A	T	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr5	149760336	149760337	chr5:149760337:A:C	rs62382302	A	C	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr5	149916459	149916460	chr5:149916460:G:T	rs113606843	G	T	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr5	150001855	150001856	chr5:150001856:A:T	rs116251868	A	T	A	Sox3.mouse_HMG_3	6	1	-	2.603972312998838	-4.147079172182632	AATGAATGGCATATAGG
chr5	150017082	150017083	chr5:150017083:C:T	rs7700709	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr5	150022884	150022885	chr5:150022885:C:A	rs6863283	C	A	C	Sox3.mouse_HMG_3	3	1	-	3.6089451674410684	-3.2975493170736447	CATGAGCTGTATTCATG
chr5	150046339	150046340	chr5:150046340:C:T	rs6894582	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr5	150067820	150067821	chr5:150067821:C:T	rs10040529	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	150129547	150129548	chr5:150129548:C:T	rs1864971	C	T	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	150178476	150178477	chr5:150178477:G:C	rs58884648	G	C	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr5	150402856	150402857	chr5:150402857:C:A	rs7722480	C	A	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr5	150444221	150444222	chr5:150444222:G:A	rs2070844	G	A	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr5	150458064	150458065	chr5:150458065:C:T	rs11745194	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	150653907	150653908	chr5:150653908:C:T	rs33412	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr5	151316229	151316230	chr5:151316230:G:T	rs9324689	G	T	G	Sox3.mouse_HMG_3	13	1	-	4.361001755850553	-2.021634918126823	AATGAATTTCATACCTA
chr5	151319158	151319159	chr5:151319159:C:G	rs80335201	C	G	C	Sox3.mouse_HMG_3	7	1	-	1.527129791177139	-4.726314331030252	TCTGAATGCTTTACATG
chr5	151336196	151336197	chr5:151336197:T:C	rs6579853	T	C	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr5	151741855	151741856	chr5:151741856:G:A	rs150056963	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	152097467	152097468	chr5:152097468:T:C	rs440768	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	152394132	152394133	chr5:152394133:A:T	rs17545367	A	T	T	Sox3.mouse_HMG_3	5	1	+	3.8916045975284392	-2.7158360669502715	AGAGAATTGTAGTCAAT
chr5	152397742	152397743	chr5:152397743:A:G	rs72791442	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr5	152397755	152397756	chr5:152397756:T:C	rs10476784	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr5	153005713	153005714	chr5:153005714:C:G	rs4958333	C	G	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr5	153044429	153044430	chr5:153044430:A:T	rs67942753	A	T	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr5	153211565	153211566	chr5:153211566:A:G	rs17581550	A	G	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr5	153438050	153438051	chr5:153438051:A:C	rs1600143	A	C	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr5	153524002	153524003	chr5:153524003:A:G	rs572798	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr5	153658601	153658602	chr5:153658602:C:T	rs78546986	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	153906261	153906262	chr5:153906262:A:C	rs1903441	A	C	C	Sox3.mouse_HMG_3	15	1	+	2.8434037479211707	0.39281980044292375	AATGAATCTCATGCAAG
chr5	153907403	153907404	chr5:153907404:A:G	rs898709	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.7411993272006334	-4.8667513143401635	GATGATTTGTAGTAAAG
chr5	153969698	153969699	chr5:153969699:C:T	rs17617521	C	T	C	Sox3.mouse_HMG_3	8	1	-	2.00853001087372	1.385413363695907	AGAGAATTGTATTCACC
chr5	153969714	153969715	chr5:153969715:A:T	rs7715318	A	T	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr5	154078073	154078074	chr5:154078074:A:G	rs942903664	A	G	A	Sox3.mouse_HMG_3	6	1	-	3.4718722477316586	-3.1360783938091386	TTTGAATGCTAGTCTGT
chr5	154444636	154444637	chr5:154444637:A:G	rs972596	A	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr5	154460102	154460103	chr5:154460103:G:A	rs374290336	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr5	155107329	155107330	chr5:155107330:C:G	chr5:155107330:C:G	C	G	c	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	155430587	155430588	chr5:155430588:C:T	rs10077633	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr5	155563398	155563399	chr5:155563399:T:C	rs77394709	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr5	155898484	155898485	chr5:155898485:A:G	rs1157296	A	G	A	Sox3.mouse_HMG_3	7	1	-	2.606395711345985	-2.797015468631332	CATGACATTTATTCATA
chr5	156138055	156138056	chr5:156138056:G:C	rs79048803	G	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	156380857	156380858	chr5:156380858:T:C	rs1472756	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr5	156590074	156590075	chr5:156590075:A:G	rs3797574	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr5	156590078	156590079	chr5:156590079:A:G	rs157292	A	G	G	Sox3.mouse_HMG_3	1	1	+	5.977850408286463	2.877720471849173	TATGAATGGCATTGTTA
chr5	156837112	156837113	chr5:156837113:G:A	rs80042789	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr5	157499433	157499434	chr5:157499434:T:C	rs13361953	T	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	157500999	157501000	chr5:157501000:C:T	rs56168343	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr5	157524233	157524234	chr5:157524234:T:C	rs72811312	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr5	157675114	157675115	chr5:157675115:C:T	rs142164982	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr5	157719379	157719380	chr5:157719380:C:T	rs34506990	C	T	C	Sox3.mouse_HMG_3	3	1	-	0.9441331770583787	-4.837431710470852	CGTGAATGTCATGCCTA
chr5	157778141	157778142	chr5:157778142:T:C	rs142342213	T	C	T	Sox3.mouse_HMG_3	1	1	-	0.9004009060033498	-2.199729030433941	AATGAATGGCAGTTTGG
chr5	157864236	157864237	chr5:157864237:G:A	rs912871952	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr5	157871640	157871641	chr5:157871641:T:C	rs150603207	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr5	157871643	157871644	chr5:157871644:G:A	rs1145585	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr5	157871674	157871675	chr5:157871675:C:T	rs10054868	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr5	157871685	157871686	chr5:157871686:T:C	rs7735412	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	157871687	157871688	chr5:157871688:G:A	rs572319624	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr5	158224683	158224684	chr5:158224684:C:T	rs62385093	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr5	158288357	158288358	chr5:158288358:A:G	rs74451510	A	G	G	Sox3.mouse_HMG_3	11	1	-	6.5277879637581915	0.4431771376562472	TCTGAATTTTTTTCATG
chr5	158415730	158415731	chr5:158415731:C:T	rs72804565	C	T	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr5	158841670	158841671	chr5:158841671:C:G	rs17056298	C	G	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	158873117	158873118	chr5:158873118:C:T	rs10866709	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr5	159094628	159094629	chr5:159094629:C:T	rs72813951	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr5	159300547	159300548	chr5:159300548:T:C	rs1433047	T	C	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr5	159337168	159337169	chr5:159337169:T:C	rs7709212	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	159441474	159441475	chr5:159441475:C:A	rs72802201	C	A	C	Sox3.mouse_HMG_3	16	1	-	1.470232315636397	0.28330279943137515	GAGGGATTTTATTCAGG
chr5	159580769	159580770	chr5:159580770:C:A	rs10065906	C	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr5	159805468	159805469	chr5:159805469:C:A	rs1432710	C	A	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr5	160045401	160045402	chr5:160045402:T:C	rs77655898	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	160210192	160210193	chr5:160210193:C:G	rs7722849	C	G	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr5	160309437	160309438	chr5:160309438:C:T	rs2421781	C	T	t	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	160376027	160376028	chr5:160376028:C:G	rs2910165	C	G	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr5	160833960	160833961	chr5:160833961:G:T	rs111693639	G	T	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr5	161113465	161113466	chr5:161113466:T:C	rs57381744	T	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr5	161307698	161307699	chr5:161307699:T:C	rs252971	T	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr5	161733693	161733694	chr5:161733694:A:T	rs4413566	A	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr5	162966507	162966508	chr5:162966508:G:A	rs140827196	G	A	.	Sox3.mouse_HMG_3	1	1	-	2.748963763609087	3.955746469275886	ACTGAATGCCAGCCAAT
chr5	163006142	163006143	chr5:163006143:T:C	rs75909715	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	163580505	163580506	chr5:163580506:C:G	rs12518984	C	G	G	Sox3.mouse_HMG_3	11	1	-	4.666336111439078	0.016161385632938785	AATGGATGAGAGTCATG
chr5	163977287	163977288	chr5:163977288:C:A	rs1363493	C	A	A	Sox3.mouse_HMG_3	7	1	-	7.879130335279022	7.029097393048948	AATGAATGTTAGTCTTC
chr5	164052817	164052818	chr5:164052818:A:G	rs111956543	A	G	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr5	164070299	164070300	chr5:164070300:G:A	rs978114	G	A	A	Sox3.mouse_HMG_3	13	1	-	7.123594833616594	0.5163342231545731	GATGAATTCTATACACA
chr5	164327267	164327268	chr5:164327268:G:A	rs55839926	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr5	165035855	165035856	chr5:165035856:A:C	rs11949154	A	C	A	Sox3.mouse_HMG_3	5	1	+	7.9231935760647145	1.3157529115860027	AATGCATTACATTCAAA
chr5	166493792	166493793	chr5:166493793:G:C	rs76893889	G	C	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr5	166621602	166621603	chr5:166621603:A:G	rs6555705	A	G	G	Sox3.mouse_HMG_3	2	1	-	3.0114414865530685	-3.594437631677862	CATGTATTTTATTCTTG
chr5	166773147	166773148	chr5:166773148:C:T	rs11743528	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr5	167032258	167032259	chr5:167032259:A:G	rs1566632	A	G	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr5	167049352	167049353	chr5:167049353:G:A	rs147557657	G	A	G	Sox3.mouse_HMG_3	13	1	-	4.480551791719466	-2.1267088187425545	GACGAAAGGCAGTCATG
chr5	167219806	167219807	chr5:167219807:A:G	rs10058890	A	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr5	167750946	167750947	chr5:167750947:G:A	rs6879227	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	167889313	167889314	chr5:167889314:C:T	rs10866614	C	T	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr5	168109710	168109711	chr5:168109711:G:C	rs10043220	G	C	G	Sox3.mouse_HMG_3	4	1	-	0.32410483372357146	0.6918296138488889	TGTGCATGGGAGTCATC
chr5	168401204	168401205	chr5:168401205:G:C	rs9313410	G	C	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr5	168532301	168532302	chr5:168532302:C:G	rs244895	C	G	G	Sox3.mouse_HMG_3	9	1	+	2.182960487898079	-3.156968519476486	AGTGAATGCCGTACATG
chr5	168598319	168598320	chr5:168598320:C:T	rs158575	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr5	168650694	168650695	chr5:168650695:A:T	rs72837886	A	T	A	Sox3.mouse_HMG_3	5	1	+	1.520311775830786	-5.087128888647925	TTTGAATCCCAGTCCTG
chr5	168766188	168766189	chr5:168766189:A:G	rs17070438	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	169169990	169169991	chr5:169169991:C:T	rs10462981	C	T	C	Sox3.mouse_HMG_3	6	1	-	-0.6100591180523114	-0.6100591180523114	GAGGAAGGGCATTCCTG
chr5	169205147	169205148	chr5:169205148:C:T	rs297860	C	T	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr5	169467107	169467108	chr5:169467108:C:T	rs7727768	C	T	T	Sox3.mouse_HMG_3	8	1	+	2.5677393927563577	2.305619647840252	CATGAATGCTCTTTATT
chr5	169696568	169696569	chr5:169696569:T:C	rs10516068	T	C	T	Sox3.mouse_HMG_3	2	1	+	2.3370204523415548	-4.268858665889377	AATGTATGTTTTTCATC
chr5	169742825	169742826	chr5:169742826:C:G	rs143655922	C	G	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	169930498	169930499	chr5:169930499:T:G	rs259892	T	G	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr5	170100161	170100162	chr5:170100162:C:T	rs145196747	C	T	C	Sox3.mouse_HMG_3	13	1	+	2.9642491707499596	-3.64301143971206	AATGAATTACAGCCGTG
chr5	170148171	170148172	chr5:170148172:T:G	rs4867926	T	G	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr5	170168775	170168776	chr5:170168776:A:G	rs889007	A	G	A	Sox3.mouse_HMG_3	15	1	-	7.177995655323478	2.46360224360841	TTTGGATTCTATTCATT
chr5	170176777	170176778	chr5:170176778:A:G	rs10065762	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr5	170466914	170466915	chr5:170466915:T:A	rs11134629	T	A	T	Sox3.mouse_HMG_3	14	1	-	8.786765365647799	2.4048191992208863	TATGATTTTCATTCATC
chr5	170750238	170750239	chr5:170750239:A:T	rs147768444	A	T	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	170753025	170753026	chr5:170753026:A:C	rs67212584	A	C	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	170753150	170753151	chr5:170753151:G:T	rs10042481	G	T	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	170818474	170818475	chr5:170818475:G:A	rs9986294	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.264785259557481	-4.51677962797175	CAAGAATGAGAGTCAGA
chr5	170960516	170960517	chr5:170960517:T:C	rs4868051	T	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	171270636	171270637	chr5:171270637:A:G	rs144699677	A	G	A	Sox3.mouse_HMG_3	6	1	-	2.9692968901339145	-3.6386537514068844	AATGAATGCTATGTATC
chr5	171394777	171394778	chr5:171394778:T:C	rs59975074	T	C	T	Sox3.mouse_HMG_3	5	1	-	5.0363401734126985	-1.4524947486581667	GGTGAATGCTATTAAAC
chr5	171418382	171418383	chr5:171418383:G:A	rs115965207	G	A	T	Sox3.mouse_HMG_3	11	1	+	2.3318042526119624	-2.318370473194176	AATGTTTTATAGTCATG
chr5	171695044	171695045	chr5:171695045:C:T	rs80011093	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr5	172047169	172047170	chr5:172047170:G:A	rs11959830	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr5	172185244	172185245	chr5:172185245:A:G	rs72845183	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr5	172328677	172328678	chr5:172328678:T:C	rs3925650	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr5	172503189	172503190	chr5:172503190:G:T	chr5:172503190:G:T	G	T	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr5	172902674	172902675	chr5:172902675:A:C	rs1421841	A	C	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr5	173292163	173292164	chr5:173292164:C:T	rs73318988	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr5	173292183	173292184	chr5:173292184:C:T	rs4868251	C	T	C	Sox3.mouse_HMG_3	1	1	+	1.8175579443957304	3.024340650062531	GCTGAATTTGATTAATG
chr5	173292207	173292208	chr5:173292208:G:T	rs4868252	G	T	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr5	173323116	173323117	chr5:173323117:C:A	rs2277949	C	A	C	Sox3.mouse_HMG_3	11	1	-	4.1670388067272235	5.6014749070230305	GCTGAATGCCTGTCAAA
chr5	173354397	173354398	chr5:173354398:A:G	rs7717113	A	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr5	173469126	173469127	chr5:173469127:C:T	rs17075987	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr5	173820679	173820680	chr5:173820680:C:T	rs73806631	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr5	174100016	174100017	chr5:174100017:T:C	rs68171940	T	C	T	Sox3.mouse_HMG_3	5	1	+	0.778622117322885	0.778622117322885	AATGATTGGCCTTCAGT
chr5	174119715	174119716	chr5:174119716:C:T	rs6867781	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr5	174119716	174119717	chr5:174119717:G:A	rs899063038	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr5	174135298	174135299	chr5:174135299:A:C	rs2546995	A	C	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr5	174178005	174178006	chr5:174178006:A:G	rs62393850	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr5	174221579	174221580	chr5:174221580:A:G	rs10476102	A	G	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr5	174324385	174324386	chr5:174324386:G:C	rs149539148	G	C	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr5	174355168	174355169	chr5:174355169:A:G	rs1863954	A	G	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr5	174551440	174551441	chr5:174551441:A:G	rs11739925	A	G	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr5	174993062	174993063	chr5:174993063:T:C	rs10061567	T	C	t	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr5	175154103	175154104	chr5:175154104:G:A	rs17807505	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr5	175378371	175378372	chr5:175378372:T:C	rs2607181	T	C	C	Sox3.mouse_HMG_3	11	1	+	4.322520780698795	-1.7620900454031494	TATGCATTTTATTAATG
chr5	175411276	175411277	chr5:175411277:A:G	rs10476155	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr5	175544942	175544943	chr5:175544943:A:C	rs17065214	A	C	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr5	175622788	175622789	chr5:175622789:T:C	rs2913233	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.0173987696014555	-1.0827311668358364	AATGAAGGCCATACAGG
chr5	175936128	175936129	chr5:175936129:T:C	rs62389151	T	C	T	Sox3.mouse_HMG_3	4	1	-	5.749250066752756	-0.6335666612413127	TCTGAATTAGATTCAAG
chr5	175939015	175939016	chr5:175939016:C:A	rs12520433	C	A	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr5	176369563	176369564	chr5:176369564:T:C	rs66997553	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr5	176410992	176410993	chr5:176410993:C:G	rs114309703	C	G	.	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr5	176693553	176693554	chr5:176693554:C:T	rs115281116	C	T	C	Sox3.mouse_HMG_3	13	1	+	1.490188991303885	-5.117071619158135	AATGAACGTCATCCAAT
chr5	177025284	177025285	chr5:177025285:C:T	rs1323406904	C	T	C	Sox3.mouse_HMG_3	5	1	-	2.6979165791105935	9.186751501181458	AATGTGTTATATTCATT
chr5	177242028	177242029	chr5:177242029:A:G	rs918459	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr5	177468815	177468816	chr5:177468816:G:A	rs446104	G	A	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr5	177468816	177468817	chr5:177468817:C:A	rs371070	C	A	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr5	177761130	177761131	chr5:177761131:A:G	rs62399963	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr5	178186834	178186835	chr5:178186835:C:T	rs2961664	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr5	178281501	178281502	chr5:178281502:C:T	rs2973766	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr5	178314867	178314868	chr5:178314868:T:C	rs2913778	T	C	C	Sox3.mouse_HMG_3	12	1	+	0.8212157084451301	-5.371637858955638	TCTGATTGAGAGTCATG
chr5	178521075	178521076	chr5:178521076:T:A	rs6600940	T	A	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr5	178541838	178541839	chr5:178541839:A:G	rs4976789	A	G	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr5	178787173	178787174	chr5:178787174:G:C	rs76086388	G	C	g	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr5	179319340	179319341	chr5:179319341:C:A	rs117958765	C	A	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr5	179319439	179319440	chr5:179319440:A:G	rs113925146	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr5	179488782	179488783	chr5:179488783:G:C	chr5:179488783:G:C	G	C	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr5	179488782	179488783	chr5:179488783:G:T	rs7735038	G	T	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr5	179558268	179558269	chr5:179558269:G:A	rs4701132	G	A	g	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr5	179927965	179927966	chr5:179927966:A:G	rs155784	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr5	180174902	180174903	chr5:180174903:C:A	rs62406137	C	A	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr5	180400141	180400142	chr5:180400142:T:C	rs1360587540	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr5	180688816	180688817	chr5:180688817:C:T	rs11249743	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr5	180697197	180697198	chr5:180697198:T:C	rs7702228	T	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr5	180812319	180812320	chr5:180812320:T:C	rs2256371	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr5	180882376	180882377	chr5:180882377:T:C	rs62405693	T	C	-	Sox3.mouse_HMG_3	15	1	-	2.139669945922532	1.2808885990661114	AATGAAGGGTATACAAT
chr5	181259956	181259957	chr5:181259957:C:T	rs943957	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr6	166188	166189	chr6:166189:T:A	rs6596788	T	A	N	Sox3.mouse_HMG_3	11	1	+	2.217599047737489	-3.867011778364456	TCTGAATTGGATTAATA
chr6	221514	221515	chr6:221515:C:T	rs12195328	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	452290	452291	chr6:452291:C:T	rs9392543	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	518858	518859	chr6:518859:C:T	rs2493016	C	T	C	Sox3.mouse_HMG_3	16	1	-	2.031334516187052	1.9953940597345263	TCTGAATTACATTTACG
chr6	599443	599444	chr6:599444:G:C	rs74687163	G	C	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr6	635319	635320	chr6:635320:C:A	rs9405871	C	A	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr6	681197	681198	chr6:681198:T:C	rs9504741	T	C	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr6	740914	740915	chr6:740915:C:A	rs2788233	C	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr6	951143	951144	chr6:951144:C:T	rs1336302	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr6	1437107	1437108	chr6:1437108:C:T	rs62389789	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	1439814	1439815	chr6:1439815:A:T	rs11242688	A	T	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr6	1449975	1449976	chr6:1449976:A:G	rs2816242	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr6	1477445	1477446	chr6:1477446:T:A	rs4435986	T	A	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr6	1487597	1487598	chr6:1487598:T:C	rs9392296	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr6	1765571	1765572	chr6:1765572:T:A	rs1076703	T	A	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	1765572	1765573	chr6:1765573:C:A	rs742535	C	A	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr6	2118228	2118229	chr6:2118229:T:C	rs114133038	T	C	T	Sox3.mouse_HMG_3	5	1	-	4.397360377673739	-2.0914745443971245	TATGCATTACATTCCTG
chr6	2204039	2204040	chr6:2204040:A:G	rs234954	A	G	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr6	2438894	2438895	chr6:2438895:A:G	rs10458139	A	G	G	Sox3.mouse_HMG_3	10	1	+	1.1698796229248687	-5.438071018615928	GATTACTTATATTCAGG
chr6	2507116	2507117	chr6:2507117:A:G	rs9501856	A	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	2507157	2507158	chr6:2507158:T:C	rs879097	T	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	2626965	2626966	chr6:2626966:A:G	rs9378721	A	G	A	Sox3.mouse_HMG_3	14	1	+	4.361788404447903	-2.0201577619790068	AATGAATTCCAGTGACA
chr6	2644395	2644396	chr6:2644396:C:T	rs2170614	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr6	2743439	2743440	chr6:2743440:T:C	rs17135660	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr6	2781383	2781384	chr6:2781384:C:G	rs56290903	C	G	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr6	2967955	2967956	chr6:2967956:G:A	rs13194790	G	A	g	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr6	2990830	2990831	chr6:2990831:T:C	rs530618291	T	C	t	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr6	3068112	3068113	chr6:3068113:A:G	rs143307760	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr6	3084894	3084895	chr6:3084895:G:T	rs7753662	G	T	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr6	3194354	3194355	chr6:3194355:C:G	rs9503441	C	G	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr6	3363922	3363923	chr6:3363923:T:G	rs9501994	T	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	3363965	3363966	chr6:3363966:T:C	rs77794278	T	C	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr6	3612630	3612631	chr6:3612631:G:A	chr6:3612631:G:A	G	A	G	Sox3.mouse_HMG_3	8	1	+	2.1479696932701398	1.524853046092326	GATGGATTGCAGCCAAG
chr6	3743380	3743381	chr6:3743381:C:T	rs144414546	C	T	C	Sox3.mouse_HMG_3	9	1	+	3.6502114524393936	3.6578481294311396	CATAAATTACATTTATA
chr6	3769860	3769861	chr6:3769861:A:T	rs9503735	A	T	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr6	3769867	3769868	chr6:3769868:T:C	rs115429791	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr6	3787023	3787024	chr6:3787024:G:A	rs9503740	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr6	3839309	3839310	chr6:3839310:T:C	rs6927199	T	C	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr6	3958545	3958546	chr6:3958546:C:T	rs9503847	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr6	4113033	4113034	chr6:4113034:G:A	rs853418	G	A	A	Sox3.mouse_HMG_3	8	1	+	0.6561272738871122	0.03301062670929822	GCTGAAGCGCAGTCATG
chr6	4133620	4133621	chr6:4133621:C:T	rs3177253	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr6	4173418	4173419	chr6:4173419:T:A	rs671199	T	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	4221451	4221452	chr6:4221452:G:T	rs2810797	G	T	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr6	4223907	4223908	chr6:4223908:C:T	rs113605535	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr6	4481069	4481070	chr6:4481070:C:T	rs1011087	C	T	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr6	4481095	4481096	chr6:4481096:G:C	rs1571630	G	C	G	Sox3.mouse_HMG_3	16	1	+	6.9859673680404	4.932111112363099	CATGAAATTTATTCAAG
chr6	4484079	4484080	chr6:4484080:A:G	rs1009604	A	G	A	Sox3.mouse_HMG_3	16	1	+	2.9565044695685945	2.99244492602112	ACTGATTTTTATTCAGA
chr6	4567292	4567293	chr6:4567293:A:G	rs393589	A	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr6	4600159	4600160	chr6:4600160:G:A	rs9328262	G	A	G	Sox3.mouse_HMG_3	0	1	+	1.8564052352214429	1.0311213340750993	GTTGAATCACATTCCTT
chr6	4600160	4600161	chr6:4600161:T:C	rs142487494	T	C	T	Sox3.mouse_HMG_3	1	1	+	1.8564052352214429	0.649622529554644	GTTGAATCACATTCCTT
chr6	4610575	4610576	chr6:4610576:A:C	rs112793412	A	C	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr6	4962942	4962943	chr6:4962943:C:A	rs1246939	C	A	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr6	4963038	4963039	chr6:4963039:A:G	rs1271709002	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr6	5098409	5098410	chr6:5098410:C:T	rs389707	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr6	5098419	5098420	chr6:5098420:C:T	rs389691	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr6	5152356	5152357	chr6:5152357:C:T	rs72811665	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr6	5152380	5152381	chr6:5152381:A:G	rs73719706	A	G	A	Sox3.mouse_HMG_3	5	1	+	5.62609626127434	-0.8627386607965233	AATGAATGACACACATG
chr6	5152408	5152409	chr6:5152409:G:A	rs116562612	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr6	5320388	5320389	chr6:5320389:A:G	rs708036	A	G	G	Sox3.mouse_HMG_3	6	1	-	3.461340202979025	-3.1466104385617726	GGTGAATCTCAGTCAAC
chr6	5395051	5395052	chr6:5395052:T:C	rs2032989	T	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr6	5398598	5398599	chr6:5398599:G:A	rs371495753	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr6	5583901	5583902	chr6:5583902:T:G	rs78815639	T	G	T	Sox3.mouse_HMG_3	8	1	-	1.6969415056835	1.8772754841833812	AATGCATCACATTCAGG
chr6	5583919	5583920	chr6:5583920:C:T	rs6903542	C	T	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr6	5622559	5622560	chr6:5622560:T:C	rs9392702	T	C	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr6	5627195	5627196	chr6:5627196:C:T	rs876783	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr6	5732519	5732520	chr6:5732520:C:T	rs1439311899	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr6	5892731	5892732	chr6:5892732:G:A	rs6914257	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	5946905	5946906	chr6:5946906:A:G	rs4959364	A	G	A	Sox3.mouse_HMG_3	8	1	-	6.313182284521661	6.575302029437767	TGTGAACTTTAGTCATG
chr6	5967796	5967797	chr6:5967797:C:A	rs6905724	C	A	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr6	6226150	6226151	chr6:6226151:C:T	rs1742926	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr6	6393339	6393340	chr6:6393340:G:A	rs17142157	G	A	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr6	6458318	6458319	chr6:6458319:T:C	rs6923439	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr6	6458332	6458333	chr6:6458333:T:C	rs9405301	T	C	T	Sox3.mouse_HMG_3	14	1	-	1.687248994090716	-4.694697172336195	CATGAAAGTTATACAAA
chr6	6599352	6599353	chr6:6599353:G:C	rs115740248	G	C	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr6	6599354	6599355	chr6:6599355:A:G	rs3789765	A	G	g	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr6	6684214	6684215	chr6:6684215:A:G	rs7741738	A	G	G	Sox3.mouse_HMG_3	15	1	-	0.35942747959992816	-4.35496593211514	GAGAAATGGCATTCCTG
chr6	6684223	6684224	chr6:6684224:A:G	rs77958770	A	G	G	Sox3.mouse_HMG_3	6	1	-	0.35942747959992816	-6.24852316194087	GAGAAATGGCATTCCTG
chr6	6702035	6702036	chr6:6702036:A:G	rs116279281	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr6	6702041	6702042	chr6:6702042:C:G	rs113732471	C	G	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr6	6702042	6702043	chr6:6702043:G:T	rs115594493	G	T	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr6	6702045	6702046	chr6:6702046:A:C	rs371814563	A	C	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr6	6702053	6702054	chr6:6702054:A:G	rs180873255	A	G	A	Sox3.mouse_HMG_3	15	1	-	4.325664694791394	-0.38872871692367417	TATGAATGCCAGCGATG
chr6	6742915	6742916	chr6:6742916:T:G	rs1294421	T	G	G	Sox3.mouse_HMG_3	12	1	+	6.394255450326837	0.013180604004927932	ACTGAATCCTATTCATT
chr6	6752033	6752034	chr6:6752034:A:G	rs77340724	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr6	6825644	6825645	chr6:6825645:A:G	rs1892457	A	G	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	6825650	6825651	chr6:6825651:C:T	rs79128679	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr6	6931484	6931485	chr6:6931485:C:T	rs34009325	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	6952796	6952797	chr6:6952797:G:A	rs115318261	G	A	g	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr6	7106082	7106083	chr6:7106083:G:C	rs2842895	G	C	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr6	7189624	7189625	chr6:7189625:G:A	rs59431963	G	A	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	7277812	7277813	chr6:7277813:C:G	rs9502577	C	G	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr6	7496443	7496444	chr6:7496444:T:G	rs7767346	T	G	T	Sox3.mouse_HMG_3	5	1	-	1.7352938581672837	-4.8721468063114255	AGTGCATGCCATTCTTA
chr6	7496450	7496451	chr6:7496451:G:A	rs7742396	G	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	7496458	7496459	chr6:7496459:G:A	rs2757603	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr6	7644609	7644610	chr6:7644610:A:T	rs9392167	A	T	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr6	7705855	7705856	chr6:7705856:A:G	rs6908257	A	G	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr6	7846996	7846997	chr6:7846997:G:A	rs56377413	G	A	G	Sox3.mouse_HMG_3	13	1	-	2.4728142490157654	-4.134446361446255	TTTAAATGCCAGTCACT
chr6	7894461	7894462	chr6:7894462:T:C	rs7749719	T	C	C	Sox3.mouse_HMG_3	8	1	-	5.360471904372668	5.983588551550481	TATTAATGATAATCATA
chr6	7953755	7953756	chr6:7953756:C:T	rs6597289	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr6	8029727	8029728	chr6:8029728:G:A	rs2744007	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr6	8070451	8070452	chr6:8070452:G:T	rs73368485	G	T	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr6	8170676	8170677	chr6:8170677:A:G	rs77189302	A	G	a	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr6	8174768	8174769	chr6:8174769:A:G	rs9505376	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr6	8239583	8239584	chr6:8239584:T:C	rs113465798	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	8392048	8392049	chr6:8392049:G:A	rs9393008	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr6	8436400	8436401	chr6:8436401:A:G	rs17143798	A	G	A	Sox3.mouse_HMG_3	16	1	+	6.663379415393136	6.6993198718456615	GATGAATTGGATTAATA
chr6	8545870	8545871	chr6:8545871:T:C	rs330109	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr6	8589682	8589683	chr6:8589683:C:G	rs980083	C	G	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr6	8628945	8628946	chr6:8628946:T:A	rs330102	T	A	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr6	8840026	8840027	chr6:8840027:C:T	rs150997764	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	8941937	8941938	chr6:8941938:G:C	rs12199574	G	C	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr6	9250538	9250539	chr6:9250539:G:T	rs139829300	G	T	G	Sox3.mouse_HMG_3	2	1	-	1.9385695799628917	2.8171199838541994	AACGGATTATATTCATC
chr6	9256923	9256924	chr6:9256924:A:G	rs9368221	A	G	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr6	9291063	9291064	chr6:9291064:T:C	rs998644	T	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	9456216	9456217	chr6:9456217:C:G	rs112741188	C	G	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	9523960	9523961	chr6:9523961:G:T	rs9296557	G	T	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr6	9765659	9765660	chr6:9765660:C:T	rs9383052	C	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr6	9831353	9831354	chr6:9831354:G:A	rs1206964	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr6	10195466	10195467	chr6:10195467:A:G	rs2327253	A	G	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr6	10259873	10259874	chr6:10259874:G:A	rs35463525	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr6	10259890	10259891	chr6:10259891:A:G	rs9350238	A	G	G	Sox3.mouse_HMG_3	6	1	-	1.76464854451987	-4.843302097020927	AATGAATTCTCTTCCAG
chr6	10270228	10270229	chr6:10270229:C:T	rs554465469	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr6	10276215	10276216	chr6:10276216:T:C	rs9465760	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	10276241	10276242	chr6:10276242:G:A	rs9465761	G	A	G	Sox3.mouse_HMG_3	11	1	+	2.9973213503168514	-1.6528533754892876	GAGGAATTGAAGTCATT
chr6	10337831	10337832	chr6:10337832:G:A	rs182140625	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr6	10549345	10549346	chr6:10549346:A:G	rs77186463	A	G	A	Sox3.mouse_HMG_3	9	1	-	8.176213941006422	8.168577264014676	AATGAAATATATTCATC
chr6	10555055	10555056	chr6:10555056:T:C	rs3756948	T	C	T	Sox3.mouse_HMG_3	15	1	+	10.960691295014868	6.246297883299799	TATCAATTCCATTCATG
chr6	10603423	10603424	chr6:10603424:A:G	rs11963593	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr6	10725324	10725325	chr6:10725325:G:A	rs192134678	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	10962016	10962017	chr6:10962017:A:G	rs2295600	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	11224971	11224972	chr6:11224972:A:G	rs116725549	A	G	A	Sox3.mouse_HMG_3	8	1	-	2.252596692242056	2.514716437158162	AGTATATGTCATTCATG
chr6	11318485	11318486	chr6:11318486:C:T	rs551658710	C	T	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	11318493	11318494	chr6:11318494:A:G	rs571523884	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr6	11318520	11318521	chr6:11318521:T:G	rs149518270	T	G	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr6	11329278	11329279	chr6:11329279:T:A	rs16871271	T	A	T	Sox3.mouse_HMG_3	10	1	-	1.6255737275734552	-5.1254777576080155	GCTGAATGTCATTACTG
chr6	11359591	11359592	chr6:11359592:A:G	rs9357126	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr6	11447213	11447214	chr6:11447214:T:A	rs11969639	T	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr6	11526136	11526137	chr6:11526137:G:C	rs570714	G	C	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr6	11565022	11565023	chr6:11565023:G:T	rs12204597	G	T	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	11615328	11615329	chr6:11615329:C:G	chr6:11615329:C:G	C	G	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr6	11641298	11641299	chr6:11641299:T:A	rs56054060	T	A	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr6	11666658	11666659	chr6:11666659:G:A	rs74867933	G	A	G	Sox3.mouse_HMG_3	6	1	-	1.5601012486907122	8.16805189023151	GCTGAACTGTAATCATG
chr6	11682789	11682790	chr6:11682790:A:G	rs548095839	A	G	A	Sox3.mouse_HMG_3	6	1	-	4.011196230357917	-2.5967544111828804	TATGTATGGCACTCAAA
chr6	11837290	11837291	chr6:11837291:T:G	rs4711435	T	G	G	Sox3.mouse_HMG_3	2	1	+	9.213836375824695	2.4648564139530915	CATGAATTTTTTTCATA
chr6	11852938	11852939	chr6:11852939:G:A	rs147221197	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	11855381	11855382	chr6:11855382:T:G	rs6457906	T	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	11868309	11868310	chr6:11868310:C:G	rs6918454	C	G	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	11910109	11910110	chr6:11910110:T:C	rs988797476	T	C	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr6	12001023	12001024	chr6:12001024:A:G	rs35209346	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr6	12151538	12151539	chr6:12151539:C:T	chr6:12151539:C:T	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr6	12172833	12172834	chr6:12172834:A:G	rs9380878	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	12231316	12231317	chr6:12231317:C:T	rs1029326	C	T	C	Sox3.mouse_HMG_3	0	1	-	1.0281658678237717	0.20288196667742597	GTTGAATTGCAGTGTTG
chr6	12391740	12391741	chr6:12391741:G:A	rs994632	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr6	12420704	12420705	chr6:12420705:C:T	rs1329138253	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr6	12431150	12431151	chr6:12431151:G:A	rs9394874	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr6	12544315	12544316	chr6:12544316:G:A	rs17616631	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr6	12567704	12567705	chr6:12567705:C:G	rs114080094	C	G	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr6	12622299	12622300	chr6:12622300:T:C	rs12201148	T	C	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr6	12648362	12648363	chr6:12648363:C:T	rs147854933	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	12753212	12753213	chr6:12753213:T:C	rs150885542	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	12785187	12785188	chr6:12785188:A:T	rs138210367	A	T	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr6	12818632	12818633	chr6:12818633:G:C	rs1332840	G	C	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr6	13330752	13330753	chr6:13330753:A:G	rs1512412	A	G	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	13422160	13422161	chr6:13422161:C:T	rs2119482	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr6	13422171	13422172	chr6:13422172:C:A	rs2119481	C	A	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr6	13575407	13575408	chr6:13575408:G:A	rs931433767	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr6	13575412	13575413	chr6:13575413:C:T	chr6:13575413:C:T	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr6	13575449	13575450	chr6:13575450:G:A	rs2804926	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr6	14025267	14025268	chr6:14025268:G:A	rs534340448	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	14089103	14089104	chr6:14089104:G:T	rs77008887	G	T	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr6	14290857	14290858	chr6:14290858:T:C	rs2274822	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr6	14317813	14317814	chr6:14317814:C:G	rs36117822	C	G	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	14317824	14317825	chr6:14317825:G:C	rs146428353	G	C	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr6	14347832	14347833	chr6:14347833:G:C	rs743019	G	C	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	14742566	14742567	chr6:14742567:G:A	rs2500076	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	14748185	14748186	chr6:14748186:A:G	rs73372198	A	G	A	Sox3.mouse_HMG_3	1	1	+	3.9912248738974823	0.8910949374601913	AATGAATTATGTTCTTG
chr6	14748215	14748216	chr6:14748216:C:T	rs6929261	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr6	14791078	14791079	chr6:14791079:T:C	rs77561210	T	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr6	14792244	14792245	chr6:14792245:A:C	rs768543	A	C	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	14839223	14839224	chr6:14839224:A:G	rs10080876	A	G	A	Sox3.mouse_HMG_3	6	1	-	0.8269427184781949	-5.781007923062603	CATTCATGCCAGTCATT
chr6	15208212	15208213	chr6:15208213:T:G	rs71551032	T	G	G	Sox3.mouse_HMG_3	6	1	+	3.820160297195762	-2.930891187985708	AATGAGTCTTATTCATT
chr6	15366228	15366229	chr6:15366229:G:T	rs80257052	G	T	G	Sox3.mouse_HMG_3	8	1	+	5.914018221570628	5.20911580797659	AATAAAAGGCATTCATG
chr6	15497362	15497363	chr6:15497363:T:C	rs58121172	T	C	C	Sox3.mouse_HMG_3	0	1	+	1.4995979270474806	0.04472728171061591	TAAGAATGGTATTGAGC
chr6	15691694	15691695	chr6:15691695:A:G	rs16876794	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr6	15767897	15767898	chr6:15767898:A:G	rs220890	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr6	15840383	15840384	chr6:15840384:C:T	rs41465249	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	15893864	15893865	chr6:15893865:C:T	rs150701694	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	15922951	15922952	chr6:15922952:C:A	rs6932531	C	A	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr6	15957885	15957886	chr6:15957886:A:C	rs9358075	A	C	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	16004972	16004973	chr6:16004973:G:A	rs9477012	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	16036803	16036804	chr6:16036804:T:A	rs4716030	T	A	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr6	16406191	16406192	chr6:16406192:A:T	rs432986	A	T	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	16472790	16472791	chr6:16472791:A:G	chr6:16472791:A:G	A	G	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr6	16724149	16724150	chr6:16724150:C:T	rs145287942	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr6	16729507	16729508	chr6:16729508:G:A	rs1150635	G	A	g	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr6	16776094	16776095	chr6:16776095:C:T	rs649395	C	T	C	Sox3.mouse_HMG_3	13	1	+	2.820419932948165	-3.7868406775138546	AGTGAATTATTTTCAGT
chr6	16898958	16898959	chr6:16898959:A:G	rs34798178	A	G	A	Sox3.mouse_HMG_3	13	1	-	4.062844777874938	10.67010538833696	GATGAATGCTATATATC
chr6	16961770	16961771	chr6:16961771:T:A	rs535781072	T	A	T	Sox3.mouse_HMG_3	2	1	+	4.339188305214297	-1.3881404091253253	GTTGAATTCCAGACAGG
chr6	17836762	17836763	chr6:17836763:A:G	rs12525646	A	G	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	17884948	17884949	chr6:17884949:C:A	rs78500633	C	A	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	18010480	18010481	chr6:18010481:G:T	rs7753762	G	T	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr6	18261207	18261208	chr6:18261208:T:C	rs77526641	T	C	C	Sox3.mouse_HMG_3	0	1	+	0.4532917710769886	-1.0015788742598761	TCTGGATGCCAGACATG
chr6	18277431	18277432	chr6:18277432:C:G	rs214559	C	G	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	18284484	18284485	chr6:18284485:C:T	rs214544	C	T	C	Sox3.mouse_HMG_3	0	1	-	3.2107798266326233	2.3854959254862793	GAAGAATGGTAGTGAAA
chr6	18328142	18328143	chr6:18328143:C:A	rs11752401	C	A	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr6	18339750	18339751	chr6:18339751:A:C	rs9396852	A	C	A	Sox3.mouse_HMG_3	7	1	-	0.5288273668043222	1.3788603090343934	GGTGATATGCAGTCATG
chr6	18751238	18751239	chr6:18751239:G:C	rs1033820	G	C	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr6	18816948	18816949	chr6:18816949:A:G	rs34855809	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr6	19027394	19027395	chr6:19027395:G:T	rs73380574	G	T	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr6	19325508	19325509	chr6:19325509:C:T	rs184161281	C	T	C	Sox3.mouse_HMG_3	8	1	+	4.610765436794143	4.348645691878037	AATGAGTTCAATTCATG
chr6	19362656	19362657	chr6:19362657:A:C	rs9465360	A	C	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr6	19477284	19477285	chr6:19477285:G:A	rs758369792	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr6	20368014	20368015	chr6:20368015:T:G	rs17509429	T	G	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	20417744	20417745	chr6:20417745:G:T	rs746720	G	T	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr6	20500534	20500535	chr6:20500535:A:G	rs12205104	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr6	20543177	20543178	chr6:20543178:A:G	rs554161743	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr6	20543236	20543237	chr6:20543237:A:G	rs6928571	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr6	20657768	20657769	chr6:20657769:A:G	rs61613763	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr6	20811616	20811617	chr6:20811617:C:T	rs4710951	C	T	T	Sox3.mouse_HMG_3	11	1	-	3.503683841582097	-1.1464908842240407	GCTGAATTCTGGTCAAG
chr6	20811631	20811632	chr6:20811632:A:G	rs1429380463	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	20843919	20843920	chr6:20843920:G:A	rs9356756	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr6	20920747	20920748	chr6:20920748:G:A	rs9465934	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	20994072	20994073	chr6:20994073:C:T	rs9350310	C	T	c	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	21079125	21079126	chr6:21079126:A:G	rs11967298	A	G	A	Sox3.mouse_HMG_3	6	1	-	5.767055880854461	-0.8408947606863362	AATGAATTTTATTCTCA
chr6	21164896	21164897	chr6:21164897:G:A	rs6941714	G	A	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr6	21327220	21327221	chr6:21327221:G:A	rs9358413	G	A	G	Sox3.mouse_HMG_3	7	1	+	3.0339873039509517	-3.519561410706776	GTTGAAGGATATTCACT
chr6	21354770	21354771	chr6:21354771:T:C	rs1005886	T	C	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr6	21402202	21402203	chr6:21402203:A:G	rs1534993	A	G	G	Sox3.mouse_HMG_3	12	1	-	0.9775310666407514	-5.215322500760015	GATGATTTCCAATCAGT
chr6	21748836	21748837	chr6:21748837:C:T	rs57764806	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr6	21753413	21753414	chr6:21753414:T:G	rs1322884	T	G	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr6	21753450	21753451	chr6:21753451:G:A	rs1322885	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	21853369	21853370	chr6:21853370:G:A	rs13213091	G	A	A	Sox3.mouse_HMG_3	3	1	+	2.5377897854305056	-3.2437751020987236	TATGAACTGTTTTCAAG
chr6	21914362	21914363	chr6:21914363:G:A	rs150603529	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr6	21914385	21914386	chr6:21914386:A:G	rs74512194	A	G	A	Sox3.mouse_HMG_3	12	1	-	2.2157726570380003	-3.9770809103627656	AATAAATGGCTGTCAAG
chr6	21950739	21950740	chr6:21950740:T:C	rs6927510	T	C	C	Sox3.mouse_HMG_3	5	1	-	1.4675368023046522	-5.021298119766213	TATGTAAGCCAGTCAAA
chr6	22147912	22147913	chr6:22147913:G:A	rs76515418	G	A	G	Sox3.mouse_HMG_3	16	1	+	3.0782061844344133	3.0422657279818877	TGTAAATGCTGTTCATG
chr6	22343983	22343984	chr6:22343984:A:G	rs1033440	A	G	A	Sox3.mouse_HMG_3	2	1	-	2.154794779949297	-4.451084338281633	TATGAACGTCACTCAAT
chr6	22586884	22586885	chr6:22586885:C:T	rs7773580	C	T	C	Sox3.mouse_HMG_3	15	1	-	1.512009993990534	2.3707913408469548	CAAGAATGCTCTTCAGG
chr6	22647827	22647828	chr6:22647828:A:G	rs10485013	A	G	G	Sox3.mouse_HMG_3	2	1	-	2.5061914312440514	-4.099687686986878	GATGAATGACAATGAAT
chr6	22647840	22647841	chr6:22647841:T:A	rs1040536	T	A	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr6	22661477	22661478	chr6:22661478:A:T	rs4236017	A	T	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	22749671	22749672	chr6:22749672:G:A	rs4077636	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr6	22764297	22764298	chr6:22764298:G:A	rs34485627	G	A	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr6	22827900	22827901	chr6:22827901:T:C	rs115632904	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.925167329966865	-0.17496260647042616	TATGAGTTTTAGTTATG
chr6	22883026	22883027	chr6:22883027:T:A	rs1928075	T	A	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	23250748	23250749	chr6:23250749:C:T	rs114435103	C	T	C	Sox3.mouse_HMG_3	2	1	+	5.4426087654698785	12.048487883700812	GACGAATGATGTTCATG
chr6	23281653	23281654	chr6:23281654:C:T	rs149111301	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr6	23389976	23389977	chr6:23389977:T:A	rs1998741	T	A	t	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr6	23682114	23682115	chr6:23682115:G:A	rs12212513	G	A	G	Sox3.mouse_HMG_3	1	1	+	2.2521848704556127	5.352314806892904	GGTGATTGTCATTGATG
chr6	23720228	23720229	chr6:23720229:C:T	rs35148131	C	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr6	23955367	23955368	chr6:23955368:C:G	rs489365	C	G	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr6	24141691	24141692	chr6:24141692:G:A	rs10946675	G	A	G	Sox3.mouse_HMG_3	3	1	+	4.13046642662642	-1.651098460902812	TCTGAATGATAGTCCAG
chr6	24287300	24287301	chr6:24287301:C:T	rs3789227	C	T	-	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr6	24614834	24614835	chr6:24614835:G:A	rs7763790	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr6	24742951	24742952	chr6:24742952:A:G	rs73394533	A	G	A	Sox3.mouse_HMG_3	1	1	+	8.212660614983339	5.112530678546048	TATGAATTTCATACAGG
chr6	24780034	24780035	chr6:24780035:A:G	rs1555430	A	G	G	Sox3.mouse_HMG_3	4	1	+	2.177554456000424	-4.205262271993642	TTTGAGGGATATTCATG
chr6	24880232	24880233	chr6:24880233:A:G	rs911255058	A	G	A	Sox3.mouse_HMG_3	5	1	+	9.90280140099557	3.4139664789247046	TATAAATGTTAGTCATT
chr6	24888726	24888727	chr6:24888727:A:C	rs2747678	A	C	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr6	25002811	25002812	chr6:25002812:C:T	rs9356952	C	T	C	Sox3.mouse_HMG_3	10	1	+	1.3089657018269725	1.3089657018269725	GGTGAATGAACGTCATG
chr6	25173919	25173920	chr6:25173920:G:A	rs1815094	G	A	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr6	25283271	25283272	chr6:25283272:G:A	rs9358849	G	A	g	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr6	25334353	25334354	chr6:25334354:T:C	rs2206197	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr6	25402074	25402075	chr6:25402075:A:G	rs880226	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr6	25455305	25455306	chr6:25455306:A:G	rs77371797	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr6	25485925	25485926	chr6:25485926:C:T	rs10498727	C	T	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	25488036	25488037	chr6:25488037:C:A	rs4712944	C	A	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr6	25548344	25548345	chr6:25548345:A:G	rs368638	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr6	25969880	25969881	chr6:25969881:T:A	rs1436309	T	A	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	26158606	26158607	chr6:26158607:A:T	rs41266799	A	T	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr6	26306053	26306054	chr6:26306054:T:C	rs9366648	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr6	26311092	26311093	chr6:26311093:T:A	rs16891525	T	A	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr6	26354551	26354552	chr6:26354552:A:C	rs9379851	A	C	C	Sox3.mouse_HMG_3	9	1	-	4.035473570540266	-1.312092113826045	AATGAATTTTTTACATG
chr6	26435584	26435585	chr6:26435585:C:T	rs4711110	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	26520774	26520775	chr6:26520775:G:T	rs750226593	G	T	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	26520775	26520776	chr6:26520776:C:G	rs758065901	C	G	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr6	26576957	26576958	chr6:26576958:A:G	rs55930917	A	G	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr6	26849982	26849983	chr6:26849983:G:A	rs12189867	G	A	-	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr6	27188315	27188316	chr6:27188316:G:C	rs12196889	G	C	G	Sox3.mouse_HMG_3	3	1	+	4.724577942530245	-2.0249127931748037	TATGAATTAATTTCATG
chr6	27471345	27471346	chr6:27471346:C:A	rs2142705	C	A	C	Sox3.mouse_HMG_3	13	1	+	3.5730049703636615	-2.8096317036137153	CATAAATGTAAGTCATG
chr6	28259657	28259658	chr6:28259658:A:G	rs12000	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	28350703	28350704	chr6:28350704:A:G	rs213239	A	G	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr6	28558877	28558878	chr6:28558878:A:C	rs414745	A	C	C	Sox3.mouse_HMG_3	0	1	+	4.8323573402376985	3.933849742247423	ATTGAATTCCATCCAGA
chr6	28673911	28673912	chr6:28673912:A:G	rs16894191	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr6	28673916	28673917	chr6:28673917:T:C	chr6:28673917:T:C	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	28673916	28673917	chr6:28673917:T:G	rs76948677	T	G	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	28673917	28673918	chr6:28673918:C:G	rs117949213	C	G	c	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr6	28673924	28673925	chr6:28673925:A:G	rs574307414	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr6	28673957	28673958	chr6:28673958:G:A	rs115444115	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr6	28710829	28710830	chr6:28710830:T:C	rs140041878	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr6	28735460	28735461	chr6:28735461:T:C	rs527579768	T	C	T	Sox3.mouse_HMG_3	2	1	+	4.349235130812384	-2.256643987418548	CATGAATGTTAAGCATA
chr6	28735466	28735467	chr6:28735467:T:C	rs1233572	T	C	C	Sox3.mouse_HMG_3	8	1	+	4.349235130812384	4.61135487572849	CATGAATGTTAAGCATA
chr6	28735486	28735487	chr6:28735487:T:G	rs9501014	T	G	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	28768706	28768707	chr6:28768707:C:T	rs9257157	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr6	28768707	28768708	chr6:28768708:G:A	rs112001540	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	28901232	28901233	chr6:28901233:C:T	rs209129	C	T	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	29017267	29017268	chr6:29017268:G:A	rs551564798	G	A	G	Sox3.mouse_HMG_3	11	1	+	1.4307348709601486	-3.21943985484599	GGTGAGTGCTAGTAATG
chr6	29107884	29107885	chr6:29107885:A:C	rs11754944	A	C	a	Sox3.mouse_HMG_3	2	1	-	2.0824964916703923	-4.666483470201211	AATTAATGCCCTTCAAG
chr6	29143060	29143061	chr6:29143061:G:A	rs7763908	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr6	29641822	29641823	chr6:29641823:T:C	rs62392946	T	C	t	Sox3.mouse_HMG_3	5	1	-	8.397260879932993	1.9084259578621292	TATGAAGTTCATTCAAA
chr6	29730258	29730259	chr6:29730259:A:C	rs9258191	A	C	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	29739122	29739123	chr6:29739123:G:A	rs929158	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	29756423	29756424	chr6:29756424:C:G	rs1633069	C	G	c	Sox3.mouse_HMG_3	16	1	+	3.193944110873337	5.247800366550638	GAACAATTTTATTCATC
chr6	29770509	29770510	chr6:29770510:A:G	rs1611270	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr6	29770520	29770521	chr6:29770521:G:T	rs1611271	G	T	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr6	29826098	29826099	chr6:29826099:C:A	rs1736937	C	A	-	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr6	29892807	29892808	chr6:29892808:A:T	rs73725492	A	T	-	Sox3.mouse_HMG_3	3	1	-	3.13669892192833	4.261628518913813	GAGTAATTCCATTCATT
chr6	29892809	29892810	chr6:29892810:T:C	rs73725493	T	C	-	Sox3.mouse_HMG_3	1	1	-	3.13669892192833	0.03656898549103749	GAGTAATTCCATTCATT
chr6	29924541	29924542	chr6:29924542:G:A	rs9259804	G	A	-	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	29932213	29932214	chr6:29932214:C:G	rs1465450284	C	G	-	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr6	29935789	29935790	chr6:29935790:T:A	rs9259941	T	A	-	Sox3.mouse_HMG_3	2	1	+	3.2388860129884303	-2.488442701351193	AATGAATGACAGTCTCC
chr6	29947691	29947692	chr6:29947692:T:C	rs7745413	T	C	-	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	29947715	29947716	chr6:29947716:T:A	rs9260248	T	A	-	Sox3.mouse_HMG_3	1	1	-	3.13669892192833	0.1666221137392373	GAGTAATTCCATTCATT
chr6	29947853	29947854	chr6:29947854:G:A	rs9260253	G	A	-	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr6	29947896	29947897	chr6:29947897:T:C	rs9260254	T	C	-	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr6	29981552	29981553	chr6:29981553:T:C	rs17180521	T	C	t	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	29991359	29991360	chr6:29991360:G:A	rs9260944	G	A	a	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr6	29998842	29998843	chr6:29998843:A:G	rs9261040	A	G	-	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr6	30207264	30207265	chr6:30207265:T:C	rs114487278	T	C	T	Sox3.mouse_HMG_3	9	1	+	4.535858745540695	4.528222068548949	GTTGAAAGTTATTCAAC
chr6	30319391	30319392	chr6:30319392:T:C	rs56847466	T	C	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr6	30555771	30555772	chr6:30555772:A:C	chr6:30555772:A:C	A	C	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr6	30573112	30573113	chr6:30573113:C:T	rs2269709	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	30609394	30609395	chr6:30609395:G:C	rs114938123	G	C	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	30691350	30691351	chr6:30691351:A:G	rs116473430	A	G	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr6	30768373	30768374	chr6:30768374:C:T	rs12526186	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr6	30845319	30845320	chr6:30845320:G:A	rs2535333	G	A	G	Sox3.mouse_HMG_3	0	1	-	4.161989336364421	5.616859981701286	CATGAATGACATGCCTG
chr6	30869512	30869513	chr6:30869513:C:T	rs114059502	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr6	30969113	30969114	chr6:30969114:G:C	rs139593512	G	C	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr6	31040892	31040893	chr6:31040893:A:T	rs9262561	A	T	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	31113997	31113998	chr6:31113998:G:T	rs17196870	G	T	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr6	31190727	31190728	chr6:31190728:T:C	rs12527342	T	C	T	Sox3.mouse_HMG_3	9	1	+	7.394929856016587	7.38729317902484	AGTGAGTGGTAGTCATA
chr6	31285786	31285787	chr6:31285787:C:T	rs73728778	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	31293443	31293444	chr6:31293444:G:A	rs75652792	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	31348456	31348457	chr6:31348457:A:C	rs9265985	A	C	a	Sox3.mouse_HMG_3	7	1	-	3.5629166303099877	4.412949572540058	GATGATTTCTAGTCTTG
chr6	31416553	31416554	chr6:31416554:G:C	rs9266844	G	C	-	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr6	31430280	31430281	chr6:31430281:G:A	rs114635873	G	A	-	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr6	31468803	31468804	chr6:31468804:T:C	rs2844507	T	C	-	Sox3.mouse_HMG_3	15	1	+	1.6832341654327847	-3.0311592462822836	CGTGGATGGCATTCTTG
chr6	31497020	31497021	chr6:31497021:C:T	rs2534675	C	T	-	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr6	31497026	31497027	chr6:31497027:G:C	rs3828904	G	C	-	Sox3.mouse_HMG_3	13	1	-	2.1927348821485673	-4.414525728313453	GCTGAATGTCACACATG
chr6	31618316	31618317	chr6:31618317:C:T	rs2736177	C	T	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr6	32178355	32178356	chr6:32178356:A:G	rs74395371	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr6	32224782	32224783	chr6:32224783:G:A	rs2267644	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr6	32268117	32268118	chr6:32268118:T:G	rs3132931	T	G	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr6	32415529	32415530	chr6:32415530:T:G	rs9268534	T	G	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	32415538	32415539	chr6:32415539:T:C	rs79199238	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	32441527	32441528	chr6:32441528:A:G	rs6926374	A	G	A	Sox3.mouse_HMG_3	2	1	-	2.006648451963608	-4.599230666267322	TATGATTGACATTGAGA
chr6	32442359	32442360	chr6:32442360:T:C	rs3129883	T	C	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr6	32474378	32474379	chr6:32474379:G:T	rs60545961	G	T	.	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr6	32474379	32474380	chr6:32474380:T:C	rs6901373	T	C	.	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr6	32474402	32474403	chr6:32474403:T:C	rs12197312	T	C	.	Sox3.mouse_HMG_3	5	1	-	1.534880222366642	-4.953954699704221	GGTAAATGCCATACAAA
chr6	32540035	32540036	chr6:32540036:C:G	rs72853918	C	G	.	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr6	32586667	32586668	chr6:32586668:G:A	rs9270094	G	A	.	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr6	32604959	32604960	chr6:32604960:G:A	rs28638783	G	A	.	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr6	32604985	32604986	chr6:32604986:G:C	rs9270938	G	C	.	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	32640435	32640436	chr6:32640436:G:A	rs9272637	G	A	.	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr6	32640473	32640474	chr6:32640474:C:G	rs28383408	C	G	.	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	32685358	32685359	chr6:32685359:A:G	rs28746965	A	G	a	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr6	32685367	32685368	chr6:32685368:A:C	rs28746966	A	C	a	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr6	32689242	32689243	chr6:32689243:C:G	rs9405042	C	G	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	32693737	32693738	chr6:32693738:A:C	rs2647008	A	C	A	Sox3.mouse_HMG_3	4	1	+	4.728829266008575	-2.0217122421108087	TATAAATGGCATCCAAA
chr6	32813136	32813137	chr6:32813137:G:A	rs2070120	G	A	G	Sox3.mouse_HMG_3	13	1	-	3.016055539101867	-3.591205071360153	GGTAAAGGACATTCATG
chr6	32816320	32816321	chr6:32816321:G:A	rs9404998	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr6	32868981	32868982	chr6:32868982:C:T	rs9276834	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr6	32884159	32884160	chr6:32884160:T:C	rs4947355	T	C	T	Sox3.mouse_HMG_3	11	1	+	3.3777640894637955	-2.7068467366381492	AATTACTTTCATTCATG
chr6	33053478	33053479	chr6:33053479:G:A	rs3130586	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr6	33143953	33143954	chr6:33143954:T:C	rs3130147	T	C	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	33144618	33144619	chr6:33144619:T:C	rs114350520	T	C	T	Sox3.mouse_HMG_3	5	1	-	1.5228810697813229	-4.96595385228954	GATGAAAGGCAGACAAT
chr6	33229766	33229767	chr6:33229767:C:T	rs213196	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr6	33538464	33538465	chr6:33538465:G:C	rs367897	G	C	c	Sox3.mouse_HMG_3	10	1	-	4.5556817085344035	4.698782552175076	GATGAATTTTCTTCTTA
chr6	33589963	33589964	chr6:33589964:T:C	rs375555	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr6	33607231	33607232	chr6:33607232:G:A	rs444697	G	A	G	Sox3.mouse_HMG_3	11	1	+	2.2596618315170534	-2.3905128942890843	AATGAATCTCAGTGATT
chr6	33703428	33703429	chr6:33703429:T:C	rs6929190	T	C	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr6	33703478	33703479	chr6:33703479:G:A	rs78647257	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr6	33823452	33823453	chr6:33823453:C:T	rs10947443	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr6	34359604	34359605	chr6:34359605:C:T	rs60100381	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr6	34588075	34588076	chr6:34588076:G:A	chr6:34588076:G:A	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr6	34925979	34925980	chr6:34925980:G:A	rs2473614	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr6	35311825	35311826	chr6:35311826:A:G	rs77743942	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	35311834	35311835	chr6:35311835:T:A	rs190026036	T	A	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	35596647	35596648	chr6:35596648:G:T	rs73746495	G	T	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	35602837	35602838	chr6:35602838:G:T	rs916772590	G	T	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	35788304	35788305	chr6:35788305:C:G	rs9462110	C	G	C	Sox3.mouse_HMG_3	0	1	-	1.2604325768159577	-0.4633589223206609	GGGGACTTTCATTCATG
chr6	36018578	36018579	chr6:36018579:G:A	rs80299928	G	A	g	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr6	36024348	36024349	chr6:36024349:G:A	rs12664506	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr6	36119198	36119199	chr6:36119199:A:C	rs11759192	A	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	36280262	36280263	chr6:36280263:T:A	rs58483070	T	A	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr6	36389482	36389483	chr6:36389483:T:C	rs77454007	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr6	36444435	36444436	chr6:36444436:T:C	rs11757842	T	C	t	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	36730382	36730383	chr6:36730383:G:A	rs236463	G	A	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr6	36741211	36741212	chr6:36741212:A:G	rs10947627	A	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	36759303	36759304	chr6:36759304:C:T	rs76063794	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	36856622	36856623	chr6:36856623:C:T	rs2071823	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	36873020	36873021	chr6:36873021:G:A	rs12661551	G	A	G	Sox3.mouse_HMG_3	13	1	-	6.742940925440079	0.13568031497805944	GATGAATTTCAGGCAGA
chr6	37212578	37212579	chr6:37212579:G:A	rs1150789	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr6	37559721	37559722	chr6:37559722:G:T	rs9369007	G	T	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr6	38050244	38050245	chr6:38050245:G:A	rs77000809	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	38229853	38229854	chr6:38229854:T:C	rs73410497	T	C	T	Sox3.mouse_HMG_3	4	1	-	5.319990000697591	-1.0628267272964755	GATAAATGACAGACATG
chr6	38302415	38302416	chr6:38302416:T:G	chr6:38302416:T:G	T	G	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr6	38338338	38338339	chr6:38338339:G:A	rs74330219	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr6	38345403	38345404	chr6:38345404:G:A	rs1931759	G	A	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr6	38542213	38542214	chr6:38542214:C:G	rs116417791	C	G	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr6	38604188	38604189	chr6:38604189:A:G	rs116437343	A	G	A	Sox3.mouse_HMG_3	0	1	-	6.567665352446021	5.112794707109156	TGTGAACTCCAGTCATG
chr6	38776779	38776780	chr6:38776780:T:C	rs1738262	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr6	38801334	38801335	chr6:38801335:G:A	rs732447	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr6	38847617	38847618	chr6:38847618:A:T	rs72851599	A	T	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr6	39154755	39154756	chr6:39154756:C:A	rs7751196	C	A	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr6	39340254	39340255	chr6:39340255:A:G	rs16891961	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr6	39495785	39495786	chr6:39495786:T:C	rs9462553	T	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr6	39563695	39563696	chr6:39563696:A:T	rs9394613	A	T	A	Sox3.mouse_HMG_3	1	1	+	1.7877148691523075	-1.1823619390367874	TATTAATGCTTTTCAGG
chr6	39563697	39563698	chr6:39563698:T:A	rs9369127	T	A	A	Sox3.mouse_HMG_3	3	1	+	1.7877148691523075	2.912644466137791	TATTAATGCTTTTCAGG
chr6	39922522	39922523	chr6:39922523:A:C	rs2984659	A	C	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr6	39952205	39952206	chr6:39952206:C:T	rs11963231	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr6	39975942	39975943	chr6:39975943:G:A	rs2475499	G	A	G	Sox3.mouse_HMG_3	0	1	+	0.2764700598306651	-0.5488138413156791	GGTGAAATCCAGGCATA
chr6	40301569	40301570	chr6:40301570:T:A	rs2038864	T	A	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr6	40522202	40522203	chr6:40522203:A:G	rs454023	A	G	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr6	40551054	40551055	chr6:40551055:G:A	rs681515	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr6	40632246	40632247	chr6:40632247:A:C	rs9357335	A	C	C	Sox3.mouse_HMG_3	12	1	-	2.0390174575245643	-4.342057388797346	AAGGAAATACAGTCATG
chr6	40635317	40635318	chr6:40635318:T:C	rs4301303	T	C	T	Sox3.mouse_HMG_3	11	1	+	4.369417941255875	-1.7151928848460711	TATGAAGTATATGCATA
chr6	40636251	40636252	chr6:40636252:C:G	rs114892934	C	G	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr6	40904273	40904274	chr6:40904274:G:A	rs62396111	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr6	40953703	40953704	chr6:40953704:G:A	rs9367088	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	40953703	40953704	chr6:40953704:G:T	chr6:40953704:G:T	G	T	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	41038940	41038941	chr6:41038941:T:C	rs9394755	T	C	C	Sox3.mouse_HMG_3	10	1	-	5.616407919843235	-0.9915427216975619	AACAAATGCCATTCATG
chr6	41209196	41209197	chr6:41209197:A:G	rs4714434	A	G	N	Sox3.mouse_HMG_3	0	1	-	4.353250630536157	2.8983799851992913	TATCACTTCCATTCATG
chr6	41227408	41227409	chr6:41227409:A:G	rs6921119	A	G	-	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr6	41286976	41286977	chr6:41286977:T:C	rs79239238	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr6	41316228	41316229	chr6:41316229:A:G	rs7761652	A	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr6	41338956	41338957	chr6:41338957:G:A	rs9471581	G	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr6	41652982	41652983	chr6:41652983:T:G	rs1008895	T	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr6	41790097	41790098	chr6:41790098:C:A	rs8393	C	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr6	41968042	41968043	chr6:41968043:C:T	rs61375651	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr6	42076792	42076793	chr6:42076793:G:C	rs149336162	G	C	G	Sox3.mouse_HMG_3	3	1	+	1.5493275981464418	-5.200163137558608	TCTGAATTTGATTCCTG
chr6	42091873	42091874	chr6:42091874:G:A	rs112175639	G	A	G	Sox3.mouse_HMG_3	16	1	+	1.5547550967000372	1.5188146402475116	CATGAGTGGCATTCGGG
chr6	42189954	42189955	chr6:42189955:T:C	rs7746021	T	C	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr6	42196892	42196893	chr6:42196893:G:A	rs62414729	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr6	42212665	42212666	chr6:42212666:G:A	rs9367134	G	A	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr6	42215174	42215175	chr6:42215175:A:G	rs6458276	A	G	G	Sox3.mouse_HMG_3	10	1	+	0.5155639186165397	-6.092386722924258	GATCACTTGTAGTCAGG
chr6	42216661	42216662	chr6:42216662:C:T	rs13197564	C	T	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr6	42371734	42371735	chr6:42371735:A:G	rs75967841	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr6	42629326	42629327	chr6:42629327:A:G	rs7741465	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr6	42944850	42944851	chr6:42944851:A:G	rs6927188	A	G	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr6	43518072	43518073	chr6:43518073:G:A	rs73426739	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr6	43579418	43579419	chr6:43579419:T:C	rs78825821	T	C	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr6	43742158	43742159	chr6:43742159:C:T	rs12665719	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	43829057	43829058	chr6:43829058:T:C	rs731678	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr6	43931790	43931791	chr6:43931791:C:T	rs864430	C	T	T	Sox3.mouse_HMG_3	13	1	+	4.269033175968292	-2.338227434493728	TATAAATCCTATTCAAG
chr6	43974651	43974652	chr6:43974652:T:C	rs4714729	T	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr6	43977121	43977122	chr6:43977122:G:A	rs1740071	G	A	A	Sox3.mouse_HMG_3	0	1	+	1.945187250372988	1.1199033492266426	GGAGTATGTCATTCATT
chr6	44333597	44333598	chr6:44333598:G:A	rs76323006	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr6	44576223	44576224	chr6:44576224:T:A	rs184475	T	A	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr6	44651365	44651366	chr6:44651366:A:C	rs75149745	A	C	g	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr6	44772117	44772118	chr6:44772118:T:C	rs112182394	T	C	T	Sox3.mouse_HMG_3	12	1	+	3.5780639691770526	-2.614789598223713	AATAAATTCCATTTATT
chr6	44808398	44808399	chr6:44808399:T:G	rs4644056	T	G	T	Sox3.mouse_HMG_3	14	1	-	7.793973671843252	1.412027505416342	TGTGATTTATATTCATA
chr6	45452184	45452185	chr6:45452185:T:C	rs2677099	T	C	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr6	45453109	45453110	chr6:45453110:C:T	rs2677100	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	45486956	45486957	chr6:45486957:T:C	rs115587374	T	C	T	Sox3.mouse_HMG_3	1	1	-	3.145304141771859	0.04517420533456651	AATGAAAGTTAGTAATA
chr6	45567482	45567483	chr6:45567483:C:G	rs74498911	C	G	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	45691289	45691290	chr6:45691290:T:C	rs9395111	T	C	C	Sox3.mouse_HMG_3	1	1	-	2.865045129020957	-0.23508480741633409	AATGAATAATATACAAA
chr6	45719052	45719053	chr6:45719053:G:A	rs2782659	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	46046946	46046947	chr6:46046947:A:G	rs16874161	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.977536876603021	-0.12259305983427149	GATGATTTATTGTCATA
chr6	46492409	46492410	chr6:46492410:T:A	rs9381458	T	A	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	46613363	46613364	chr6:46613364:C:T	rs9463216	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr6	46782299	46782300	chr6:46782300:C:G	rs10948308	C	G	G	Sox3.mouse_HMG_3	3	1	-	2.624674606756116	-4.1248161289489325	AATGACTCTTATTCAAG
chr6	46909608	46909609	chr6:46909609:C:A	rs78336833	C	A	C	Sox3.mouse_HMG_3	7	1	-	2.793756600849106	1.9437236586190352	AGAGAATGCCATTAATG
chr6	46975026	46975027	chr6:46975027:C:G	rs10948315	C	G	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	46994214	46994215	chr6:46994215:C:A	rs1226500	C	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	47034280	47034281	chr6:47034281:T:C	rs116018772	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr6	47065643	47065644	chr6:47065644:A:G	rs1226536	A	G	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr6	47126602	47126603	chr6:47126603:C:T	rs1738817	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr6	47182931	47182932	chr6:47182932:C:T	rs2223918	C	T	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	47243129	47243130	chr6:47243130:T:C	rs73473620	T	C	T	Sox3.mouse_HMG_3	12	1	+	3.8285539149938925	-2.3642996524068742	CATTAATTAGATTCATG
chr6	47440688	47440689	chr6:47440689:T:C	rs79660381	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr6	47651016	47651017	chr6:47651017:A:G	rs9349421	A	G	G	Sox3.mouse_HMG_3	15	1	-	2.389127657726206	-2.325265753988862	CATTAAGTATATTCATA
chr6	47656562	47656563	chr6:47656563:A:G	rs9369730	A	G	G	Sox3.mouse_HMG_3	2	1	-	2.958889694548847	-3.646989423682083	TATGGATGAGAGTCAAG
chr6	47656573	47656574	chr6:47656574:C:T	rs76859817	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr6	47716854	47716855	chr6:47716855:G:A	rs1360157	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr6	47855349	47855350	chr6:47855350:G:C	rs562163	G	C	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr6	47986745	47986746	chr6:47986746:T:C	rs2180739	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr6	48512309	48512310	chr6:48512310:G:A	rs2586828	G	A	g	Sox3.mouse_HMG_3	8	1	+	1.9363577548279014	1.3132411076500878	TTATAATGGTAGTCATA
chr6	48665853	48665854	chr6:48665854:C:T	rs243123	C	T	.	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr6	48917360	48917361	chr6:48917361:A:G	rs12190836	A	G	A	Sox3.mouse_HMG_3	3	1	-	4.452601022195202	4.609604771004866	AATTAATGTCATTAATG
chr6	49053090	49053091	chr6:49053091:A:G	rs4601115	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr6	50188035	50188036	chr6:50188036:C:T	rs1340840	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr6	50278104	50278105	chr6:50278105:C:T	rs548827645	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	50602675	50602676	chr6:50602676:T:C	rs562247	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	50602680	50602681	chr6:50602681:C:A	rs562219	C	A	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	50663076	50663077	chr6:50663077:A:G	rs280319	A	G	G	Sox3.mouse_HMG_3	7	1	+	2.031054896997335	8.584603611655062	TTTGAAAATTATTCATG
chr6	50821064	50821065	chr6:50821065:A:C	rs3798519	A	C	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	50864743	50864744	chr6:50864744:C:A	rs9381907	C	A	C	Sox3.mouse_HMG_3	0	1	-	4.8999427002997935	4.6310218465000395	GATGAATGCCAGACTTG
chr6	50922914	50922915	chr6:50922915:T:C	rs114522790	T	C	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	51365734	51365735	chr6:51365735:A:G	rs1409891	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr6	51778625	51778626	chr6:51778626:T:A	rs9370053	T	A	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr6	51830848	51830849	chr6:51830849:A:T	rs1571084	A	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr6	52000577	52000578	chr6:52000578:T:C	rs12212158	T	C	C	Sox3.mouse_HMG_3	15	1	-	8.532884113737722	7.674102766881303	TATGAATGACAGACAAA
chr6	52152381	52152382	chr6:52152382:G:A	rs11751016	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	52200190	52200191	chr6:52200191:C:G	rs11755816	C	G	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr6	52200210	52200211	chr6:52200211:A:G	rs11751159	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr6	52340835	52340836	chr6:52340836:C:T	rs7774677	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr6	52508185	52508186	chr6:52508186:G:C	rs79109258	G	C	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr6	52670823	52670824	chr6:52670824:C:A	rs6934298	C	A	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr6	52731939	52731940	chr6:52731940:C:A	rs2748993	C	A	C	Sox3.mouse_HMG_3	0	1	+	1.061859399927129	1.9603669979174045	CGTGAATGACATGCCTG
chr6	52749825	52749826	chr6:52749826:G:A	rs185909289	G	A	g	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr6	52779188	52779189	chr6:52779189:G:C	rs9395819	G	C	-	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr6	52961271	52961272	chr6:52961272:A:G	rs547957	A	G	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr6	52994437	52994438	chr6:52994438:A:G	rs9474367	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr6	53031572	53031573	chr6:53031573:C:T	rs222455	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr6	53111518	53111519	chr6:53111519:C:T	rs2816349	C	T	C	Sox3.mouse_HMG_3	13	1	+	2.417745783514053	-4.189514826947967	GGGGAATGACATTCCTG
chr6	53154860	53154861	chr6:53154861:C:T	rs6934728	C	T	c	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr6	53302650	53302651	chr6:53302651:G:A	rs79129577	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	53302699	53302700	chr6:53302700:C:A	rs149817145	C	A	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr6	53307042	53307043	chr6:53307043:C:T	rs13202564	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	53411666	53411667	chr6:53411667:G:A	rs7748351	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr6	53429754	53429755	chr6:53429755:A:T	rs1401158	A	T	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr6	53605283	53605284	chr6:53605284:C:A	rs475333	C	A	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr6	53708974	53708975	chr6:53708975:A:G	rs59649693	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	53772394	53772395	chr6:53772395:A:G	rs10755766	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr6	53962582	53962583	chr6:53962583:C:T	rs763813	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	54290872	54290873	chr6:54290873:G:A	rs2136136	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr6	54431865	54431866	chr6:54431866:A:G	rs171492	A	G	g	Sox3.mouse_HMG_3	5	1	+	2.487598715778875	-4.001236206291988	AAAGAAGGGTAGTCATC
chr6	54431878	54431879	chr6:54431879:T:C	rs243818	T	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr6	54801444	54801445	chr6:54801445:A:C	rs4715482	A	C	A	Sox3.mouse_HMG_3	11	1	-	1.7907765386893224	0.35634043839351515	ATTGATTGTTATGCATG
chr6	54907139	54907140	chr6:54907140:C:T	rs239828	C	T	C	Sox3.mouse_HMG_3	16	1	+	1.7759050887520789	2.6428318282243577	CTTGAATGCCAGTTAAC
chr6	55281586	55281587	chr6:55281587:G:A	rs3800543	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr6	55419973	55419974	chr6:55419974:T:C	rs7746284	T	C	C	Sox3.mouse_HMG_3	6	1	+	5.078684484346658	-1.5292661571941415	ACAGAATTGTAGTCATT
chr6	55667840	55667841	chr6:55667841:G:A	rs4457162	G	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr6	55876271	55876272	chr6:55876272:T:C	rs9464298	T	C	C	Sox3.mouse_HMG_3	11	1	+	7.473426863081656	1.3888160369797111	CATAAATTGTATTCAAT
chr6	56037297	56037298	chr6:56037298:C:G	rs62406117	C	G	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr6	56041189	56041190	chr6:56041190:G:A	rs181630051	G	A	G	Sox3.mouse_HMG_3	16	1	-	2.3518511467876295	3.2187778862599083	TATGAATGCCAGATATC
chr6	56041207	56041208	chr6:56041208:A:T	rs7749409	A	T	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	56102597	56102598	chr6:56102598:T:C	rs6459124	T	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr6	56300006	56300007	chr6:56300007:T:C	rs4401668	T	C	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr6	56542308	56542309	chr6:56542309:C:T	rs62412509	C	T	C	Sox3.mouse_HMG_3	8	1	+	4.234882193164957	3.972762448248851	CTTCAATGCTATTCAGA
chr6	56595784	56595785	chr6:56595785:A:C	rs72879282	A	C	-	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr6	56595785	56595786	chr6:56595786:C:T	rs72879285	C	T	-	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	56687108	56687109	chr6:56687109:C:G	rs555001199	C	G	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr6	56724848	56724849	chr6:56724849:C:G	rs78290654	C	G	C	Sox3.mouse_HMG_3	9	1	-	4.030316057202203	9.370245064576764	TATGTATTTGAGTCATA
chr6	56804225	56804226	chr6:56804226:G:T	rs13201733	G	T	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr6	57423965	57423966	chr6:57423966:T:C	rs9475938	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr6	58198388	58198389	chr6:58198389:A:G	rs10498815	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	58198389	58198390	chr6:58198390:G:C	rs9500313	G	C	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr6	58402498	58402499	chr6:58402499:C:A	rs111370950	C	A	.	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr6	60329509	60329510	chr6:60329510:C:T	rs1221858838	C	T	.	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	62060338	62060339	chr6:62060339:C:A	rs4421181	C	A	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	62122234	62122235	chr6:62122235:T:A	rs2344796	T	A	T	Sox3.mouse_HMG_3	2	1	+	1.5250331001090174	-4.202295614230605	GATGAATTACAGCAAAG
chr6	62148048	62148049	chr6:62148049:G:A	rs1401352	G	A	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr6	62276045	62276046	chr6:62276046:T:C	rs9454834	T	C	T	Sox3.mouse_HMG_3	6	1	+	1.4753727067451774	-5.132577934795623	CCTGAGTTGCAGTCAGG
chr6	62437537	62437538	chr6:62437538:T:C	rs2639404	T	C	T	Sox3.mouse_HMG_3	14	1	-	3.5035042615204732	-2.8784419049064374	AATAAATGTCATCCAAG
chr6	62641067	62641068	chr6:62641068:G:T	rs2782384	G	T	T	Sox3.mouse_HMG_3	16	1	+	3.951869968706677	2.764940452501655	TATAAATGACATTAAAG
chr6	63000053	63000054	chr6:63000054:T:A	rs7750310	T	A	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr6	63349586	63349587	chr6:63349587:A:G	rs994110153	A	G	A	Sox3.mouse_HMG_3	15	1	-	2.725378344223106	-1.989015067491962	GTCGAATTGCAATCATA
chr6	63808871	63808872	chr6:63808872:G:A	rs4710440	G	A	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	64020167	64020168	chr6:64020168:A:G	rs12190415	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr6	64081514	64081515	chr6:64081515:T:C	rs9342117	T	C	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr6	64417976	64417977	chr6:64417977:T:C	rs34720667	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr6	64580486	64580487	chr6:64580487:G:A	rs3898512	G	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr6	64676841	64676842	chr6:64676842:G:A	rs7759743	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr6	65055962	65055963	chr6:65055963:A:G	rs9363328	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	65348448	65348449	chr6:65348449:T:C	rs9363348	T	C	T	Sox3.mouse_HMG_3	5	1	+	2.8844071687798167	2.8844071687798167	TATGATTTGCATTTATC
chr6	65469718	65469719	chr6:65469719:A:T	rs9354253	A	T	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr6	65798478	65798479	chr6:65798479:T:C	rs13199085	T	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	65962326	65962327	chr6:65962327:C:A	rs10223722	C	A	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr6	66081295	66081296	chr6:66081296:G:T	rs3912417	G	T	g	Sox3.mouse_HMG_3	13	1	-	1.743981307573366	-4.638655366404011	AGTCAATGCTATTCTTA
chr6	66307649	66307650	chr6:66307650:T:C	rs9345809	T	C	T	Sox3.mouse_HMG_3	10	1	-	2.330581418260228	-4.27736922328057	TATGAATGCCAGAAAAA
chr6	66328320	66328321	chr6:66328321:C:T	rs59914835	C	T	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr6	67267983	67267984	chr6:67267984:C:A	rs67645556	C	A	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr6	67963135	67963136	chr6:67963136:T:G	rs1877775	T	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr6	68078864	68078865	chr6:68078865:C:T	rs34275016	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr6	68164384	68164385	chr6:68164385:C:G	rs71555380	C	G	C	Sox3.mouse_HMG_3	11	1	-	1.3363906011037388	-3.3137841247023996	GATGAATGATAGGCCGG
chr6	68196817	68196818	chr6:68196818:A:G	rs9363867	A	G	a	Sox3.mouse_HMG_3	9	1	-	1.0296865511112412	1.0220498741194934	TATGAATGATGGCCAGG
chr6	68498035	68498036	chr6:68498036:A:G	rs3971978	A	G	A	Sox3.mouse_HMG_3	11	1	-	1.76888799228064	-4.315722833821305	GATGAAGTGTCTTCAGA
chr6	69887042	69887043	chr6:69887043:A:C	rs3805956	A	C	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr6	70312217	70312218	chr6:70312218:G:C	rs77896971	G	C	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr6	70312218	70312219	chr6:70312219:G:T	rs1398315184	G	T	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	70547697	70547698	chr6:70547698:A:T	rs117829260	A	T	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr6	70563749	70563750	chr6:70563750:C:T	rs9455159	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr6	70900310	70900311	chr6:70900311:G:C	rs73505638	G	C	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr6	70957846	70957847	chr6:70957847:G:C	rs6900011	G	C	C	Sox3.mouse_HMG_3	7	1	+	2.636531971512464	-3.616912150694926	GTAGAATGGCCTTCATT
chr6	70957864	70957865	chr6:70957865:A:G	rs62420338	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	71279338	71279339	chr6:71279339:C:T	rs4707906	C	T	c	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr6	71482671	71482672	chr6:71482672:T:C	rs478959	T	C	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr6	71490843	71490844	chr6:71490844:T:C	rs113576254	T	C	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr6	71529581	71529582	chr6:71529582:G:A	rs169211	G	A	A	Sox3.mouse_HMG_3	10	1	-	9.552990700523445	9.552990700523445	TATGAATGCTCTTCAAG
chr6	71588491	71588492	chr6:71588492:G:A	rs72925179	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr6	71595371	71595372	chr6:71595372:A:G	rs1486606	A	G	G	Sox3.mouse_HMG_3	11	1	-	1.499028892240103	-4.585581933861842	CATGGATGATTTTCAAA
chr6	71965568	71965569	chr6:71965569:C:A	rs947287183	C	A	C	Sox3.mouse_HMG_3	3	1	-	0.5835482996272545	-6.32294618488746	GATGAATGGTTGCCAAC
chr6	72023646	72023647	chr6:72023647:C:T	rs489348	C	T	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	72214232	72214233	chr6:72214233:A:G	rs2463698	A	G	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr6	72218875	72218876	chr6:72218876:T:C	rs2496542	T	C	T	Sox3.mouse_HMG_3	2	1	+	2.7263010962938443	-3.8795780219370855	TATGAATTCCATAGAAG
chr6	72748902	72748903	chr6:72748903:C:T	rs183833980	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr6	72748903	72748904	chr6:72748904:G:A	rs115164479	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr6	73873198	73873199	chr6:73873199:A:T	rs3012564	A	T	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	73923949	73923950	chr6:73923950:A:G	rs557901588	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr6	73924061	73924062	chr6:73924062:G:A	rs189895967	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	73980685	73980686	chr6:73980686:G:T	rs113885978	G	T	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr6	74212656	74212657	chr6:74212657:C:T	rs2781211	C	T	T	Sox3.mouse_HMG_3	16	1	-	1.7973836355892299	1.7614431791367042	GATGAATAATAGTGAAG
chr6	74255834	74255835	chr6:74255835:C:T	rs9359074	C	T	c	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr6	74333536	74333537	chr6:74333537:A:G	rs1191290256	A	G	A	Sox3.mouse_HMG_3	10	1	+	6.499465603079422	-0.1084850384613748	AGTGAATTTTATACATT
chr6	74652196	74652197	chr6:74652197:G:T	rs76320840	G	T	G	Sox3.mouse_HMG_3	8	1	+	0.5553830041991203	-0.14951940939491748	GAAGAATGGCATTTCTG
chr6	74654512	74654513	chr6:74654513:T:C	rs2485091	T	C	T	Sox3.mouse_HMG_3	2	1	+	9.556212682471783	2.950333564240853	TATGAATGCCAGTAATT
chr6	74654543	74654544	chr6:74654544:T:G	rs62438603	T	G	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr6	74941421	74941422	chr6:74941422:C:T	rs74890844	C	T	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr6	75482327	75482328	chr6:75482328:A:G	rs10806039	A	G	A	Sox3.mouse_HMG_3	5	1	+	6.680847471701631	0.19201254963076653	ATTCAATGGTATTCATC
chr6	75922487	75922488	chr6:75922488:G:A	rs188333091	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	76043896	76043897	chr6:76043897:G:A	rs73468825	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr6	76474788	76474789	chr6:76474789:G:A	rs1873315	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr6	76512250	76512251	chr6:76512251:A:T	rs9341581	A	T	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	76659623	76659624	chr6:76659624:G:A	rs3004002	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	76864541	76864542	chr6:76864542:G:A	rs9361159	G	A	G	Sox3.mouse_HMG_3	9	1	-	5.865560338476488	5.873197015468234	TAAGAAGGACATTCATA
chr6	76867444	76867445	chr6:76867445:A:C	rs34606836	A	C	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr6	77021945	77021946	chr6:77021946:C:T	rs10806080	C	T	c	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr6	77124184	77124185	chr6:77124185:C:T	rs144007850	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	77296236	77296237	chr6:77296237:T:G	rs1592219	T	G	T	Sox3.mouse_HMG_3	0	1	-	3.1159847657639026	2.217477167773627	ATGGAATGCTATTCAGC
chr6	78605639	78605640	chr6:78605640:A:C	rs1570075	A	C	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	78640993	78640994	chr6:78640994:T:C	rs62425669	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr6	78701687	78701688	chr6:78701688:A:C	rs75903811	A	C	C	Sox3.mouse_HMG_3	2	1	+	4.218125958200412	3.3395755543091035	AAAAAATTCTAGTCATG
chr6	79168021	79168022	chr6:79168022:T:C	rs6911361	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	79420215	79420216	chr6:79420216:A:C	rs196686	A	C	C	Sox3.mouse_HMG_3	7	1	-	2.9882563654468726	3.838289307676944	CAGAAATTGTATTCATT
chr6	79635157	79635158	chr6:79635158:C:A	rs114060241	C	A	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr6	79863783	79863784	chr6:79863784:G:A	rs346299	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr6	79874434	79874435	chr6:79874435:T:C	rs41346150	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	80181394	80181395	chr6:80181395:A:T	rs2490244	A	T	T	Sox3.mouse_HMG_3	12	1	-	1.0655770879355078	-5.047233771791722	GATGGCTGACAGTCAGA
chr6	80287441	80287442	chr6:80287442:T:C	rs653581	T	C	C	Sox3.mouse_HMG_3	0	1	+	5.21741107978057	3.7625404344437055	TATAAATGCTATTCCTT
chr6	80317181	80317182	chr6:80317182:A:G	rs806843	A	G	a	Sox3.mouse_HMG_3	1	1	-	10.787376590073833	9.580593884407033	TTTGAATTTTAGTCAAG
chr6	80332033	80332034	chr6:80332034:G:A	rs1159505	G	A	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	80339676	80339677	chr6:80339677:A:C	rs77171662	A	C	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	80402471	80402472	chr6:80402472:T:A	rs1583570	T	A	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	80722422	80722423	chr6:80722423:G:A	rs62424616	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr6	80733705	80733706	chr6:80733706:T:G	rs7773045	T	G	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr6	80733757	80733758	chr6:80733758:T:C	rs9294180	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	80781328	80781329	chr6:80781329:T:G	rs7747514	T	G	T	Sox3.mouse_HMG_3	11	1	+	2.9444312022990244	1.5099951020032172	TGAGAATTGCATGCATG
chr6	80781334	80781335	chr6:80781335:C:T	rs80238754	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr6	80781343	80781344	chr6:80781344:C:T	rs147910032	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr6	80781344	80781345	chr6:80781345:G:A	rs75176608	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr6	81172713	81172714	chr6:81172714:G:A	rs118137685	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr6	81238197	81238198	chr6:81238198:C:G	rs9361775	C	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	81452393	81452394	chr6:81452394:T:C	rs142023394	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr6	81559035	81559036	chr6:81559036:A:C	rs4448140	A	C	A	Sox3.mouse_HMG_3	15	1	-	5.560342992708723	2.4377521816154815	GATGAGTGATATTTATG
chr6	81561130	81561131	chr6:81561131:C:T	chr6:81561131:C:T	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr6	81561135	81561136	chr6:81561136:T:A	rs7739492	T	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	82030823	82030824	chr6:82030824:G:A	rs59219161	G	A	G	Sox3.mouse_HMG_3	0	1	+	3.6788521695247063	2.8535682683783623	GGGGAATGGCAGTCAGT
chr6	82329502	82329503	chr6:82329503:A:G	rs7762072	A	G	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr6	82398130	82398131	chr6:82398131:A:G	chr6:82398131:A:G	A	G	A	Sox3.mouse_HMG_3	2	1	-	8.881929958821626	2.2760508405906936	CATGAATGTGAGTCATT
chr6	82398135	82398136	chr6:82398136:T:C	rs9341920	T	C	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr6	82521614	82521615	chr6:82521615:C:T	rs35301711	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr6	82590125	82590126	chr6:82590126:C:T	rs114339045	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr6	82877642	82877643	chr6:82877643:T:C	rs9361982	T	C	T	Sox3.mouse_HMG_3	10	1	-	1.7570151739282365	-4.850935467612561	ACACAATGGCATTCATA
chr6	82957318	82957319	chr6:82957319:G:T	rs34566948	G	T	G	Sox3.mouse_HMG_3	8	1	-	4.736409798007913	4.556075819508032	TGTGAATTCCTTTCAGG
chr6	82957325	82957326	chr6:82957326:C:T	rs7739323	C	T	T	Sox3.mouse_HMG_3	1	1	-	4.736409798007913	7.8365397344452035	TGTGAATTCCTTTCAGG
chr6	83252957	83252958	chr6:83252958:T:C	rs145736814	T	C	T	Sox3.mouse_HMG_3	1	1	-	6.688797045199306	3.588667108762012	AATGAATGTTTTTCAGT
chr6	83520784	83520785	chr6:83520785:G:A	rs9449650	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr6	84043718	84043719	chr6:84043719:C:G	rs1928279	C	G	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	84249716	84249717	chr6:84249717:C:T	rs7739877	C	T	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr6	84270558	84270559	chr6:84270559:T:C	rs34359927	T	C	T	Sox3.mouse_HMG_3	6	1	+	1.1454678638300824	-5.462482777710716	GCTTAATGCTGTTCATG
chr6	84491627	84491628	chr6:84491628:G:A	rs79690168	G	A	G	Sox3.mouse_HMG_3	1	1	+	1.7285941281618948	4.828724064599186	CGTGACTTTCAGTCAGG
chr6	84554092	84554093	chr6:84554093:T:C	rs62448922	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	84554871	84554872	chr6:84554872:A:C	rs7770073	A	C	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr6	84862028	84862029	chr6:84862029:T:A	rs9353228	T	A	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr6	85111975	85111976	chr6:85111976:G:A	rs867744	G	A	A	Sox3.mouse_HMG_3	7	1	+	2.823775723582835	-3.729772991074893	ATTGAACGTGATTCATG
chr6	85115968	85115969	chr6:85115969:A:G	rs6901432	A	G	G	Sox3.mouse_HMG_3	10	1	+	6.507335655023385	-0.10061498651741174	GATGAATGGCATTACTG
chr6	85361265	85361266	chr6:85361266:C:T	rs6929086	C	T	C	Sox3.mouse_HMG_3	9	1	+	6.997970760727322	7.005607437719069	CATGAATGACAGCCAAA
chr6	85361285	85361286	chr6:85361286:A:T	rs490055	A	T	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr6	85361637	85361638	chr6:85361638:A:T	rs140652535	A	T	A	Sox3.mouse_HMG_3	1	1	-	8.470991320248174	11.441068128437271	TTTGAATGGTATTAATT
chr6	85395439	85395440	chr6:85395440:C:T	rs553753560	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	85418332	85418333	chr6:85418333:C:T	rs112652370	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	85594420	85594421	chr6:85594421:G:A	rs752980126	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr6	85644805	85644806	chr6:85644806:C:G	chr6:85644806:C:G	C	G	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr6	86352894	86352895	chr6:86352895:T:G	rs4526166	T	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr6	86518074	86518075	chr6:86518075:G:C	rs112173228	G	C	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr6	86537668	86537669	chr6:86537669:G:A	rs1007878	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr6	86962095	86962096	chr6:86962096:A:G	rs78382687	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	87154622	87154623	chr6:87154623:C:G	rs78334590	C	G	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr6	87293580	87293581	chr6:87293581:T:C	rs11759727	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr6	87689848	87689849	chr6:87689849:T:A	rs62417757	T	A	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr6	87732127	87732128	chr6:87732128:C:G	rs894681289	C	G	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr6	87732146	87732147	chr6:87732147:A:C	rs138864874	A	C	A	Sox3.mouse_HMG_3	16	1	-	1.3564108877017	2.543340403906722	GTTGAATTCCAAGCATT
chr6	87817131	87817132	chr6:87817132:G:T	rs2787897	G	T	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	87818013	87818014	chr6:87818014:C:T	rs2763286	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr6	87869841	87869842	chr6:87869842:G:A	rs4129674	G	A	A	Sox3.mouse_HMG_3	15	1	-	3.068858206426119	7.783251618141187	TCTGAATTGCATCCACG
chr6	88072643	88072644	chr6:88072644:A:G	rs806444	A	G	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr6	88606715	88606716	chr6:88606716:A:G	rs17795830	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr6	89172466	89172467	chr6:89172467:T:C	rs9362622	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr6	89172487	89172488	chr6:89172488:G:T	rs7775147	G	T	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr6	89242803	89242804	chr6:89242804:C:T	rs144832023	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr6	89242834	89242835	chr6:89242835:T:C	rs1002317268	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.6808848110184504	-0.41924512541884096	TATGGATTTCAATCAAA
chr6	89272611	89272612	chr6:89272612:C:G	rs62416349	C	G	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr6	89613904	89613905	chr6:89613905:T:C	rs1179906	T	C	C	Sox3.mouse_HMG_3	7	1	+	2.9044559127146155	-2.4989552672627022	CATGTATTCTCTTCATG
chr6	89669016	89669017	chr6:89669017:T:A	rs761730	T	A	T	Sox3.mouse_HMG_3	12	1	+	1.425100272305415	-4.687710587421815	AATGAGAGACATTCAGA
chr6	89689183	89689184	chr6:89689184:G:A	rs6914142	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr6	89877760	89877761	chr6:89877761:C:A	rs660543	C	A	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	89979310	89979311	chr6:89979311:A:G	rs12664541	A	G	A	Sox3.mouse_HMG_3	10	1	-	4.989285316221466	4.989285316221466	GGTGAATGTTTGTCAAA
chr6	89997310	89997311	chr6:89997311:A:G	rs4707585	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr6	90004702	90004703	chr6:90004703:G:A	rs12665440	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr6	90155457	90155458	chr6:90155458:A:G	rs1158329	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr6	90292315	90292316	chr6:90292316:G:A	rs543402108	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr6	90304531	90304532	chr6:90304532:G:A	rs16882645	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr6	90478556	90478557	chr6:90478557:A:G	rs9451433	A	G	A	Sox3.mouse_HMG_3	1	1	+	1.6734432848922063	-1.4266866515450858	TAGGAACTGCATTCAGG
chr6	90484429	90484430	chr6:90484430:A:G	rs1221220	A	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	90522528	90522529	chr6:90522529:T:A	rs9353737	T	A	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr6	90631877	90631878	chr6:90631878:C:T	rs9353748	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr6	90700677	90700678	chr6:90700678:C:A	rs1145740	C	A	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr6	91097820	91097821	chr6:91097821:A:G	rs9353793	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	91304799	91304800	chr6:91304800:G:A	rs111323976	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr6	92174109	92174110	chr6:92174110:G:T	rs11753774	G	T	G	Sox3.mouse_HMG_3	3	1	-	2.2042275013656782	3.172153349541497	AATCAATTTCTTTCATT
chr6	92300010	92300011	chr6:92300011:G:C	rs12525836	G	C	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	92811429	92811430	chr6:92811430:C:A	rs6922609	C	A	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	92849051	92849052	chr6:92849052:A:C	rs1319822	A	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	92849087	92849088	chr6:92849088:A:G	rs12210424	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	93319469	93319470	chr6:93319470:A:T	rs164300	A	T	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr6	93319472	93319473	chr6:93319473:T:G	rs35982242	T	G	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr6	93621693	93621694	chr6:93621694:G:T	rs73528476	G	T	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr6	94004399	94004400	chr6:94004400:C:T	rs118021986	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	94131154	94131155	chr6:94131155:A:G	rs596498	A	G	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	94258999	94259000	chr6:94259000:C:A	rs1468752	C	A	C	Sox3.mouse_HMG_3	13	1	+	1.8261974258082214	-4.556439248169156	TGTAAATGCCAGTCTTA
chr6	94291300	94291301	chr6:94291301:G:A	rs117999939	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr6	94376969	94376970	chr6:94376970:A:G	rs401745	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	94521444	94521445	chr6:94521445:G:C	rs222541	G	C	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr6	94597491	94597492	chr6:94597492:G:A	rs9452849	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr6	95169864	95169865	chr6:95169865:T:C	rs36173287	T	C	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr6	95266928	95266929	chr6:95266929:A:G	rs74219788	A	G	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr6	96171038	96171039	chr6:96171039:A:C	rs12191880	A	C	A	Sox3.mouse_HMG_3	6	1	-	3.4907736394638524	-3.260277845717617	AATGATTGGCAATCAAG
chr6	96622116	96622117	chr6:96622117:T:C	rs211169	T	C	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr6	97026591	97026592	chr6:97026592:C:G	rs6930620	C	G	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr6	97246347	97246348	chr6:97246348:A:G	rs113417022	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr6	97437197	97437198	chr6:97437198:G:A	rs200823	G	A	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr6	98717289	98717290	chr6:98717290:A:G	rs4129546	A	G	G	Sox3.mouse_HMG_3	3	1	+	2.0005901767373455	7.782155064266577	CATATATGGCATTCAGA
chr6	98794762	98794763	chr6:98794763:T:C	rs13216442	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr6	99085404	99085405	chr6:99085405:C:T	rs2747729	C	T	c	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr6	99137266	99137267	chr6:99137267:T:C	rs56861883	T	C	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr6	99146980	99146981	chr6:99146981:T:C	rs1003242	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr6	99255749	99255750	chr6:99255750:C:A	rs58089101	C	A	C	Sox3.mouse_HMG_3	3	1	-	1.5829405373772243	-5.323553947137491	TGTGAATGGCTTTCTTT
chr6	99590563	99590564	chr6:99590564:T:C	rs4142022	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr6	99822830	99822831	chr6:99822831:T:C	rs143323879	T	C	T	Sox3.mouse_HMG_3	0	1	-	4.047325036513064	4.872608937659408	ACTGAATTGCTGTCATT
chr6	100008955	100008956	chr6:100008956:T:C	rs60364384	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr6	100591402	100591403	chr6:100591403:G:C	rs108422	G	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr6	100735417	100735418	chr6:100735418:T:C	rs79448396	T	C	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr6	100735430	100735431	chr6:100735431:G:C	rs76168351	G	C	G	Sox3.mouse_HMG_3	3	1	+	0.9486374665161019	-5.800853269188948	TTTGATTGCTAGTGATG
chr6	100767909	100767910	chr6:100767910:C:T	rs9399688	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr6	100767910	100767911	chr6:100767911:C:T	rs79803731	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr6	100863912	100863913	chr6:100863913:G:A	rs34445308	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	100891101	100891102	chr6:100891102:T:C	rs6919745	T	C	C	Sox3.mouse_HMG_3	15	1	+	2.7025400952879437	-2.011853316427125	TATCACTTACAGTCATA
chr6	101020864	101020865	chr6:101020865:C:A	rs1415469	C	A	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr6	101387222	101387223	chr6:101387223:A:G	rs77562146	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr6	101387239	101387240	chr6:101387240:T:C	rs1338161	T	C	C	Sox3.mouse_HMG_3	9	1	+	2.553203507350533	2.5455668303587853	AATGAATGTTAGCCCTT
chr6	101395541	101395542	chr6:101395542:G:A	rs185334625	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr6	101395578	101395579	chr6:101395579:A:C	rs569081331	A	C	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr6	101631124	101631125	chr6:101631125:G:C	rs2786249	G	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr6	101730976	101730977	chr6:101730977:T:C	rs9322605	T	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	101829133	101829134	chr6:101829134:C:T	rs77365969	C	T	C	Sox3.mouse_HMG_3	1	1	-	1.5010376629381361	4.601167599375429	GGTGAATCACATTTATT
chr6	102065989	102065990	chr6:102065990:C:T	rs1034253	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr6	102641594	102641595	chr6:102641595:C:A	rs11970397	C	A	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr6	102814340	102814341	chr6:102814341:T:G	rs36023659	T	G	t	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr6	103163641	103163642	chr6:103163642:G:A	rs112496394	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr6	103511112	103511113	chr6:103511113:A:G	rs6917514	A	G	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr6	103617922	103617923	chr6:103617923:T:C	rs7765535	T	C	C	Sox3.mouse_HMG_3	4	1	-	2.687908353119395	-3.694908374874672	AGTTAATGGCAGTCAAC
chr6	103629777	103629778	chr6:103629778:G:A	rs9377547	G	A	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr6	103687858	103687859	chr6:103687859:G:C	rs72989328	G	C	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr6	103849289	103849290	chr6:103849290:A:G	rs9404478	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	103860817	103860818	chr6:103860818:T:C	rs13198601	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr6	103982747	103982748	chr6:103982748:A:T	rs72998583	A	T	A	Sox3.mouse_HMG_3	14	1	+	6.574639145683495	0.19269297925658457	GCTGAATGCCAGTTATA
chr6	104322146	104322147	chr6:104322147:C:A	rs433624	C	A	C	Sox3.mouse_HMG_3	4	1	+	1.6468043749436465	8.397345883063032	ATTGCATGTTATTCCTG
chr6	104532420	104532421	chr6:104532421:C:T	rs1890511	C	T	T	Sox3.mouse_HMG_3	13	1	+	3.244636336800226	-3.362624273661795	CATGATTTTTATACATA
chr6	104633216	104633217	chr6:104633217:C:T	rs76672836	C	T	c	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr6	104639651	104639652	chr6:104639652:C:T	rs556222081	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr6	104722505	104722506	chr6:104722506:G:T	rs7743022	G	T	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr6	104897149	104897150	chr6:104897150:T:C	rs17065381	T	C	T	Sox3.mouse_HMG_3	2	1	+	3.430234919623917	-3.175644198607012	TATGAATTGTAATCCAG
chr6	104897160	104897161	chr6:104897161:C:T	rs9377679	C	T	C	Sox3.mouse_HMG_3	13	1	+	3.430234919623917	-3.1770256908381027	TATGAATTGTAATCCAG
chr6	105588657	105588658	chr6:105588658:T:G	rs9386458	T	G	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr6	105893824	105893825	chr6:105893825:A:C	rs73772350	A	C	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr6	106421612	106421613	chr6:106421613:T:C	rs1340611	T	C	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	106489316	106489317	chr6:106489317:G:A	rs76189228	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr6	106530914	106530915	chr6:106530915:A:G	rs35843244	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr6	106535252	106535253	chr6:106535253:T:G	rs9486381	T	G	T	Sox3.mouse_HMG_3	8	1	+	2.910277296930352	3.61517971052439	TATGTATTTTTTTCATT
chr6	106618132	106618133	chr6:106618133:T:C	rs9400033	T	C	T	Sox3.mouse_HMG_3	6	1	-	3.650133049355732	3.650133049355732	TATGAAAGCTATACATC
chr6	106618136	106618137	chr6:106618137:A:G	rs9373883	A	G	a	Sox3.mouse_HMG_3	2	1	-	3.650133049355732	-2.9557460688751975	TATGAAAGCTATACATC
chr6	106670398	106670399	chr6:106670399:C:T	rs12663120	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr6	107109679	107109680	chr6:107109680:C:G	rs151006311	C	G	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr6	107459823	107459824	chr6:107459824:G:A	rs117345871	G	A	G	Sox3.mouse_HMG_3	9	1	-	1.4155423114303947	1.4231789884221406	TATGCATGCCACTCAGT
chr6	107729017	107729018	chr6:107729018:G:T	rs4945787	G	T	T	Sox3.mouse_HMG_3	13	1	-	-0.6036041479033594	-6.986240821880735	GATGAGGGCCATCCATG
chr6	107737115	107737116	chr6:107737116:G:A	rs78766640	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	107819077	107819078	chr6:107819078:C:T	rs17589005	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr6	107820366	107820367	chr6:107820367:C:T	rs1446357408	C	T	c	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr6	107832240	107832241	chr6:107832241:A:G	rs7754063	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	107959474	107959475	chr6:107959475:A:C	rs73504810	A	C	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr6	108156624	108156625	chr6:108156625:A:G	rs59135983	A	G	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr6	108184481	108184482	chr6:108184482:A:G	rs79655871	A	G	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr6	108242640	108242641	chr6:108242641:C:A	rs149888849	C	A	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr6	108589867	108589868	chr6:108589868:A:C	rs17532552	A	C	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr6	108745532	108745533	chr6:108745533:A:C	rs508197	A	C	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr6	109198962	109198963	chr6:109198963:G:A	rs386696	G	A	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr6	109205619	109205620	chr6:109205620:G:A	rs378447	G	A	A	Sox3.mouse_HMG_3	7	1	+	10.505030363064073	3.951481648406344	CATGAATGCTGTTCATG
chr6	109322894	109322895	chr6:109322895:T:C	rs925513854	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr6	109322921	109322922	chr6:109322922:A:G	rs77497373	A	G	G	Sox3.mouse_HMG_3	14	1	+	6.500232966874916	0.11828680044800532	CTTGATTGGCAGTCATA
chr6	109760414	109760415	chr6:109760415:G:A	rs9481003	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr6	109892265	109892266	chr6:109892266:T:C	rs6941085	T	C	C	Sox3.mouse_HMG_3	1	1	+	3.430190037173647	2.2234073315068468	GTTGGGTGGCATTCATG
chr6	110182098	110182099	chr6:110182099:C:A	rs74436730	C	A	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr6	110390681	110390682	chr6:110390682:C:T	rs2207357	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr6	110521346	110521347	chr6:110521347:C:T	rs9386909	C	T	T	Sox3.mouse_HMG_3	10	1	-	-0.23591314330546886	6.372037498235328	GATGAAAGGCGGTCACG
chr6	110619092	110619093	chr6:110619093:C:T	rs1524579	C	T	C	Sox3.mouse_HMG_3	5	1	-	-0.2487863223503275	6.240048599720535	CATGAGGGGCAGTCAGG
chr6	110811674	110811675	chr6:110811675:T:G	rs148728391	T	G	T	Sox3.mouse_HMG_3	4	1	-	3.179790026533243	-3.570751481586143	AATAAATTTTCTTCATT
chr6	110813531	110813532	chr6:110813532:T:G	rs1279578	T	G	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr6	111012056	111012057	chr6:111012057:A:G	rs9384782	A	G	G	Sox3.mouse_HMG_3	2	1	-	4.465808498787931	-2.140070619442999	AATGAAAGCCCTTCATA
chr6	111074421	111074422	chr6:111074422:C:T	rs56351290	C	T	C	Sox3.mouse_HMG_3	11	1	-	1.5960249069245835	-3.0541498188815552	GTTGACTGCTAGCCATA
chr6	111228553	111228554	chr6:111228554:A:G	rs6902442	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr6	111573218	111573219	chr6:111573219:A:G	rs61149152	A	G	A	Sox3.mouse_HMG_3	5	1	-	2.211488440670243	2.211488440670243	TCTGATTTCCATTCACG
chr6	111597661	111597662	chr6:111597662:G:A	rs174393	G	A	A	Sox3.mouse_HMG_3	13	1	-	0.7827684907501226	-5.8244921197118975	GCTGAATGGTTTTCTTT
chr6	111597664	111597665	chr6:111597665:A:C	rs4947128	A	C	A	Sox3.mouse_HMG_3	10	1	-	0.7827684907501226	0.9258693343907959	GCTGAATGGTTTTCTTT
chr6	111683922	111683923	chr6:111683923:T:G	rs2237257	T	G	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	111889829	111889830	chr6:111889830:A:G	rs6906459	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	112047265	112047266	chr6:112047266:G:A	rs11153332	G	A	-	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr6	112172571	112172572	chr6:112172572:C:T	rs34737104	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr6	112235887	112235888	chr6:112235888:G:C	rs12206703	G	C	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr6	112438997	112438998	chr6:112438998:C:T	rs1276639	C	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	112636805	112636806	chr6:112636806:G:A	rs77012185	G	A	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	113073960	113073961	chr6:113073961:C:T	rs76478376	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr6	113207440	113207441	chr6:113207441:A:G	rs9400600	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr6	113350643	113350644	chr6:113350644:G:A	rs2029555	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	113427869	113427870	chr6:113427870:T:C	rs62424191	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr6	113433201	113433202	chr6:113433202:T:C	rs2294231	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr6	113660985	113660986	chr6:113660986:G:A	rs9398360	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	113776868	113776869	chr6:113776869:C:T	rs11153443	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr6	113776890	113776891	chr6:113776891:T:C	rs9481398	T	C	T	Sox3.mouse_HMG_3	8	1	-	4.166740213885673	4.789856861063485	GGTAAATTACATTCACA
chr6	113881777	113881778	chr6:113881778:A:G	rs113177884	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr6	113927156	113927157	chr6:113927157:A:G	rs557753122	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	114042773	114042774	chr6:114042774:G:A	rs12197917	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr6	114376731	114376732	chr6:114376732:C:G	rs186197374	C	G	C	Sox3.mouse_HMG_3	11	1	-	3.684826294791593	-0.9653484310145437	GGTGAATTTTAGTAAGG
chr6	114493844	114493845	chr6:114493845:T:G	rs9320495	T	G	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr6	114565830	114565831	chr6:114565831:T:C	rs1041212	T	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr6	114650342	114650343	chr6:114650343:C:T	rs6906296	C	T	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr6	114651135	114651136	chr6:114651136:T:C	rs9398379	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	114733094	114733095	chr6:114733095:A:G	rs9372406	A	G	A	Sox3.mouse_HMG_3	16	1	+	2.118234575931977	2.1541750323845026	TAAAAATGGGATTCATA
chr6	114874703	114874704	chr6:114874704:C:T	rs7741124	C	T	C	Sox3.mouse_HMG_3	9	1	+	3.7586696741106067	3.7663063511023545	TATGAATTCCATTATTT
chr6	114878346	114878347	chr6:114878347:T:G	rs115379334	T	G	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr6	114992592	114992593	chr6:114992593:T:C	rs3932658	T	C	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr6	115610870	115610871	chr6:115610871:A:C	rs140300384	A	C	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	115811797	115811798	chr6:115811798:G:A	rs74785232	G	A	g	Sox3.mouse_HMG_3	10	1	-	5.9009510500966185	5.9009510500966185	GATGAATGCTCGTCACA
chr6	116008651	116008652	chr6:116008652:A:G	chr6:116008652:A:G	A	G	A	Sox3.mouse_HMG_3	12	1	-	0.6593104995318717	-5.533543067868894	TCAGAATGACAGTCCTG
chr6	116280443	116280444	chr6:116280444:A:T	rs62423798	A	T	A	Sox3.mouse_HMG_3	14	1	+	4.788535433437285	-1.5934107329896254	GATGCATAGTATTCATT
chr6	116313770	116313771	chr6:116313771:T:G	rs12189722	T	G	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	116410920	116410921	chr6:116410921:A:G	rs17196517	A	G	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	116485887	116485888	chr6:116485888:T:C	rs17077996	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr6	116497559	116497560	chr6:116497560:G:C	rs10485185	G	C	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr6	116545785	116545786	chr6:116545786:A:G	rs17078051	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr6	117393182	117393183	chr6:117393183:C:G	rs1535330	C	G	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr6	117448564	117448565	chr6:117448565:T:C	rs9489193	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr6	118470271	118470272	chr6:118470272:T:G	rs4502975	T	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	118515526	118515527	chr6:118515527:C:A	chr6:118515527:C:A	C	A	C	Sox3.mouse_HMG_3	8	1	+	5.336331188072859	5.155997209572978	AAAGAATTCAATTCATA
chr6	118539503	118539504	chr6:118539504:T:C	rs76862799	T	C	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr6	118559476	118559477	chr6:118559477:T:G	rs12198461	T	G	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr6	118697713	118697714	chr6:118697714:A:T	rs1771755	A	T	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr6	118743485	118743486	chr6:118743486:G:A	rs9387599	G	A	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr6	118908674	118908675	chr6:118908675:A:G	rs9489539	A	G	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr6	119025695	119025696	chr6:119025696:A:T	rs140242896	A	T	A	Sox3.mouse_HMG_3	1	1	+	1.372350520511211	-1.597726287677884	CATGACTGTTATTTAAG
chr6	119226625	119226626	chr6:119226626:C:T	rs9489627	C	T	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	119243877	119243878	chr6:119243878:A:G	rs7753492	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr6	119280689	119280690	chr6:119280690:T:A	rs17442596	T	A	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr6	119281348	119281349	chr6:119281349:T:C	rs115482058	T	C	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr6	119524656	119524657	chr6:119524657:C:T	rs6913097	C	T	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr6	120180895	120180896	chr6:120180896:C:T	rs155160	C	T	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr6	120197538	120197539	chr6:120197539:T:C	rs261771	T	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	120302327	120302328	chr6:120302328:C:G	rs77578484	C	G	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr6	120869706	120869707	chr6:120869707:A:C	rs2817948	A	C	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr6	121334970	121334971	chr6:121334971:G:A	rs141141160	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr6	121365648	121365649	chr6:121365649:G:A	rs7747777	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	121523204	121523205	chr6:121523205:C:A	rs4143301	C	A	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr6	121597746	121597747	chr6:121597747:A:G	rs9387980	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr6	121653142	121653143	chr6:121653143:C:T	rs149627031	C	T	c	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr6	121678279	121678280	chr6:121678280:A:C	rs6914088	A	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr6	121774771	121774772	chr6:121774772:A:G	rs62430077	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	121823718	121823719	chr6:121823719:A:G	rs113002545	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr6	121959586	121959587	chr6:121959587:T:G	rs7752132	T	G	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr6	122010586	122010587	chr6:122010587:G:C	rs9375092	G	C	-	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr6	122010595	122010596	chr6:122010596:C:T	rs9401481	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr6	122010635	122010636	chr6:122010636:A:G	rs7761209	A	G	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	122358497	122358498	chr6:122358498:C:T	rs13218584	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	122361277	122361278	chr6:122361278:G:C	rs9388062	G	C	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	122373073	122373074	chr6:122373074:G:A	rs1339529	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr6	122788179	122788180	chr6:122788180:A:G	rs6919681	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.6678102642419943	-3.9401403772988037	TATGATTTCCATGCATC
chr6	122919353	122919354	chr6:122919354:A:G	rs1564902	A	G	A	Sox3.mouse_HMG_3	7	1	-	2.549662073672015	-2.853749106305303	AATGTATTACAGTCCTG
chr6	122970516	122970517	chr6:122970517:T:C	rs4412222	T	C	T	Sox3.mouse_HMG_3	16	1	+	1.6128344771122674	0.7459077376399885	GATGAATTGCTTTTAAT
chr6	122999667	122999668	chr6:122999668:A:C	rs11154135	A	C	A	Sox3.mouse_HMG_3	4	1	+	3.9519167504896355	-2.7986247576297494	GAAAAATTTTATTCAAG
chr6	123017368	123017369	chr6:123017369:T:C	rs12660608	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	123306531	123306532	chr6:123306532:T:G	rs9320925	T	G	T	Sox3.mouse_HMG_3	8	1	-	1.7640801876696186	1.9444141661695007	AGAGAATTACATTCTTG
chr6	123306549	123306550	chr6:123306550:T:G	rs55991401	T	G	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr6	123536167	123536168	chr6:123536168:T:A	rs6931021	T	A	G	Sox3.mouse_HMG_3	11	1	+	1.47304134244489	-4.611569483657056	TGTGAATGCCATCTATT
chr6	123734070	123734071	chr6:123734071:C:A	rs73551471	C	A	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr6	123925309	123925310	chr6:123925310:A:G	rs142498098	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	124028238	124028239	chr6:124028239:G:T	rs17086515	G	T	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr6	124599693	124599694	chr6:124599694:C:G	rs17052134	C	G	C	Sox3.mouse_HMG_3	7	1	-	3.3612532120335232	-2.892190910173866	ATTCAATGATATTCACA
chr6	124601200	124601201	chr6:124601201:A:G	rs9401756	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr6	124721522	124721523	chr6:124721523:C:G	rs118068412	C	G	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	124721525	124721526	chr6:124721526:C:T	rs141172209	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr6	124753302	124753303	chr6:124753303:A:C	rs12661994	A	C	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	124858810	124858811	chr6:124858811:T:C	rs12192826	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	124868686	124868687	chr6:124868687:T:C	rs60980833	T	C	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr6	125008466	125008467	chr6:125008467:G:A	rs1931657	G	A	A	Sox3.mouse_HMG_3	8	1	-	6.469744457456039	6.207624712539933	TATGCATGCGATTCATG
chr6	125101932	125101933	chr6:125101933:T:C	rs1744622	T	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr6	125200191	125200192	chr6:125200192:A:G	rs554004	A	G	A	Sox3.mouse_HMG_3	1	1	+	10.315457380083608	7.215327443646315	CATGAATTGCATTAATG
chr6	125250709	125250710	chr6:125250710:T:C	rs9491339	T	C	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr6	125262646	125262647	chr6:125262647:G:A	rs189094595	G	A	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	125262662	125262663	chr6:125262663:A:G	rs3799721	A	G	A	Sox3.mouse_HMG_3	5	1	+	3.188213326120392	-3.3006215959504717	TATGAATAATATTCTAG
chr6	125443069	125443070	chr6:125443070:A:G	rs77684532	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	125769769	125769770	chr6:125769770:G:T	rs117868697	G	T	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr6	125781323	125781324	chr6:125781324:T:C	chr6:125781324:T:C	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	125781339	125781340	chr6:125781340:C:G	rs3734635	C	G	G	Sox3.mouse_HMG_3	5	1	+	4.957101742508737	5.075707484916585	TGTGACTTGCAGTCATC
chr6	125957908	125957909	chr6:125957909:A:T	rs75748479	A	T	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr6	126154078	126154079	chr6:126154079:T:G	rs117102925	T	G	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	126266821	126266822	chr6:126266822:G:T	rs9482734	G	T	T	Sox3.mouse_HMG_3	7	1	+	3.2109236756474093	2.360890733417338	AATGACTGCCTGTCATG
chr6	126715896	126715897	chr6:126715897:C:T	rs10484759	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr6	126845260	126845261	chr6:126845261:G:A	rs11757289	G	A	A	Sox3.mouse_HMG_3	13	1	-	6.297383552670724	-0.3098770577912968	GATGAATTACTTTCACA
chr6	127328204	127328205	chr6:127328205:C:T	rs11961994	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr6	127328238	127328239	chr6:127328239:C:T	rs9372865	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr6	127914407	127914408	chr6:127914408:A:G	chr6:127914408:A:G	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	128131174	128131175	chr6:128131175:G:A	rs140121947	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr6	128365770	128365771	chr6:128365771:T:C	rs77400266	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr6	128518132	128518133	chr6:128518133:G:A	rs62426791	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr6	128725620	128725621	chr6:128725621:C:A	rs12663546	C	A	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr6	129038977	129038978	chr6:129038978:C:T	rs9398893	C	T	C	Sox3.mouse_HMG_3	8	1	+	1.0145835326594406	0.7524637877433346	GTTTAATGCCCTTCATT
chr6	129402525	129402526	chr6:129402526:T:C	rs73774810	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr6	129441227	129441228	chr6:129441228:G:A	rs929400698	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr6	129517053	129517054	chr6:129517054:C:G	rs7773753	C	G	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr6	129646554	129646555	chr6:129646555:A:T	rs12192821	A	T	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr6	129730606	129730607	chr6:129730607:C:T	rs6899920	C	T	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	129730779	129730780	chr6:129730780:T:G	rs34699829	T	G	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	129741709	129741710	chr6:129741710:T:C	rs9492364	T	C	C	Sox3.mouse_HMG_3	4	1	-	5.172043745866782	-1.2107729821272863	TATGAATGTTTTTAATG
chr6	129775251	129775252	chr6:129775252:A:T	rs34833653	A	T	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr6	129844838	129844839	chr6:129844839:A:G	rs1480513	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr6	129902404	129902405	chr6:129902405:C:T	rs9375676	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr6	130065825	130065826	chr6:130065826:T:G	rs9375703	T	G	T	Sox3.mouse_HMG_3	4	1	-	1.8649188937831604	-4.885622614336223	TAAGAATGCTAGTAAGA
chr6	130223345	130223346	chr6:130223346:A:T	rs185255819	A	T	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr6	130223363	130223364	chr6:130223364:T:C	rs4895867	T	C	C	Sox3.mouse_HMG_3	2	1	-	2.0710716893357124	1.0494204418037332	CGAGAATTACATTCAGC
chr6	130525901	130525902	chr6:130525902:C:T	rs9402237	C	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr6	130743141	130743142	chr6:130743142:T:A	rs114497715	T	A	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	130743150	130743151	chr6:130743151:T:C	chr6:130743151:T:C	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr6	130743150	130743151	chr6:130743151:T:G	rs17059488	T	G	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr6	130810509	130810510	chr6:130810510:C:T	rs11758228	C	T	C	Sox3.mouse_HMG_3	8	1	-	1.4342574835982655	0.8111408364204524	AATGAGTTGTAGCCATC
chr6	130909542	130909543	chr6:130909543:A:G	rs73617128	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	130968939	130968940	chr6:130968940:A:G	rs112453237	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.524820116903615	-3.1895732948114532	GTTGAATGCCTGACATA
chr6	131096828	131096829	chr6:131096829:A:G	rs9483216	A	G	A	Sox3.mouse_HMG_3	9	1	-	3.450858445719607	3.4432217687278612	TATGGATGCTAGACATT
chr6	131184090	131184091	chr6:131184091:G:T	rs76670887	G	T	g	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr6	131216484	131216485	chr6:131216485:G:A	rs191667577	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr6	131250301	131250302	chr6:131250302:G:A	rs950852896	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr6	131432083	131432084	chr6:131432084:G:T	rs17596690	G	T	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr6	131765026	131765027	chr6:131765027:G:T	rs1018909047	G	T	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr6	131976353	131976354	chr6:131976354:G:A	rs9388952	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr6	132078991	132078992	chr6:132078992:A:C	rs7748412	A	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	132131692	132131693	chr6:132131693:G:A	rs75859648	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr6	132298881	132298882	chr6:132298882:A:G	rs1977075	A	G	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr6	132821365	132821366	chr6:132821366:C:T	rs12207011	C	T	.	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr6	132927912	132927913	chr6:132927913:A:T	rs72556061	A	T	A	Sox3.mouse_HMG_3	1	1	+	2.727446414316855	-0.24263039387224006	GATTAATGACCTTCAAG
chr6	132951643	132951644	chr6:132951644:A:G	rs9483517	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	132971482	132971483	chr6:132971483:G:A	rs422692	G	A	A	Sox3.mouse_HMG_3	1	1	-	3.1212945016773213	4.328077207344121	GCTGAATGATGTTCACA
chr6	133316674	133316675	chr6:133316675:C:T	rs12525252	C	T	C	Sox3.mouse_HMG_3	12	1	-	1.4698204744316146	1.7380844610262944	CATGAATGAGAGGCAAA
chr6	133396964	133396965	chr6:133396965:G:A	rs120490	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	133408738	133408739	chr6:133408739:C:T	rs148476122	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr6	133671652	133671653	chr6:133671653:T:C	rs9483604	T	C	C	Sox3.mouse_HMG_3	4	1	-	2.4104729351292997	-3.972343792864767	TGGGAATGGTTTTCATG
chr6	133709524	133709525	chr6:133709525:T:C	rs6904690	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr6	133777811	133777812	chr6:133777812:T:C	rs574431929	T	C	T	Sox3.mouse_HMG_3	5	1	-	4.974751982882445	-1.51408293918842	GATGAATGATATACCTT
chr6	133899588	133899589	chr6:133899589:C:G	rs2327434	C	G	C	Sox3.mouse_HMG_3	13	1	+	0.46635103095785935	-6.140909579504162	AGTCAATCCCAGTCATG
chr6	134247641	134247642	chr6:134247642:T:A	rs192669181	T	A	T	Sox3.mouse_HMG_3	8	1	-	1.698037601076375	1.6162518346601502	GTCGAGTTACATTCATA
chr6	134247650	134247651	chr6:134247651:C:T	rs17063566	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr6	134247782	134247783	chr6:134247783:C:T	rs734738	C	T	C	Sox3.mouse_HMG_3	3	1	-	1.6641276079344105	-4.117437279594823	AGTGAATGGCATAAATT
chr6	134537472	134537473	chr6:134537473:A:G	rs7774306	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr6	134575389	134575390	chr6:134575390:C:T	rs228435	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr6	134704614	134704615	chr6:134704615:A:G	rs9389206	A	G	A	Sox3.mouse_HMG_3	16	1	-	4.479380779080811	3.6124540396085325	ACTGAATAATAGTCATT
chr6	134744265	134744266	chr6:134744266:C:G	rs9385700	C	G	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr6	134935356	134935357	chr6:134935357:G:C	rs6569982	G	C	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	134997251	134997252	chr6:134997252:A:G	rs7773126	A	G	G	Sox3.mouse_HMG_3	15	1	-	2.3690373874711703	-2.345356024243898	AATGCTTTCTAGTCATG
chr6	135022360	135022361	chr6:135022361:C:G	rs949547	C	G	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr6	135136402	135136403	chr6:135136403:A:G	rs1883354	A	G	G	Sox3.mouse_HMG_3	5	1	+	0.8207057313830446	-5.668129190687821	TCTGAATGAGGGTCATG
chr6	135210661	135210662	chr6:135210662:T:C	rs210948	T	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr6	135255105	135255106	chr6:135255106:A:G	rs4896135	A	G	a	Sox3.mouse_HMG_3	11	1	-	1.5688008045068937	-4.515810021595051	AATGAAGGACATGCAGG
chr6	135907080	135907081	chr6:135907081:G:A	rs2327672	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr6	136012809	136012810	chr6:136012810:A:C	rs6931583	A	C	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr6	136290680	136290681	chr6:136290681:T:A	rs111654480	T	A	T	Sox3.mouse_HMG_3	10	1	-	6.666427091303991	-0.08462439387748	TTTAAATTCTATTCAAA
chr6	136508891	136508892	chr6:136508892:T:C	rs142027878	T	C	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	136720226	136720227	chr6:136720227:G:A	rs1028565	G	A	A	Sox3.mouse_HMG_3	13	1	-	5.347931749581245	-1.2593288608807744	TCTGAGTTTCAGTCATG
chr6	136740944	136740945	chr6:136740945:G:A	rs911179	G	A	G	Sox3.mouse_HMG_3	0	1	+	1.9721154670564576	1.1468315659101136	GGTGAATTTTTTTCACT
chr6	137054264	137054265	chr6:137054265:C:A	rs276586	C	A	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr6	137655085	137655086	chr6:137655086:T:C	rs522563	T	C	C	Sox3.mouse_HMG_3	14	1	-	2.0594586906546617	-4.322487475772249	TTTGCTTGATATTCATG
chr6	137727289	137727290	chr6:137727290:G:A	rs6917696	G	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	137793999	137794000	chr6:137794000:A:C	rs113531891	A	C	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr6	137819984	137819985	chr6:137819985:G:A	rs117612537	G	A	g	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr6	138309040	138309041	chr6:138309041:G:C	rs6903681	G	C	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr6	138426349	138426350	chr6:138426350:A:C	rs151157016	A	C	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr6	138444130	138444131	chr6:138444131:C:G	rs1928276	C	G	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr6	138493279	138493280	chr6:138493280:T:C	rs4896369	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr6	138493891	138493892	chr6:138493892:C:T	rs143296558	C	T	C	Sox3.mouse_HMG_3	14	1	-	5.975714098456118	12.35766026488303	GAAGAATGGCATTCGTT
chr6	138573942	138573943	chr6:138573943:A:T	rs114775932	A	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	138609927	138609928	chr6:138609928:T:C	rs12523677	T	C	T	Sox3.mouse_HMG_3	14	1	-	0.5545124426319625	-5.8274337237949485	GAAGGATGGCATTGATG
chr6	138662696	138662697	chr6:138662697:A:G	rs6933459	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr6	138762561	138762562	chr6:138762562:T:C	rs4896399	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	138762604	138762605	chr6:138762605:T:C	rs6911335	T	C	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr6	138957541	138957542	chr6:138957542:G:C	rs9321686	G	C	G	Sox3.mouse_HMG_3	15	1	+	1.2804235727294029	-0.311379027892424	GAAGGATGTCATTCAGC
chr6	139003893	139003894	chr6:139003894:A:T	rs11961842	A	T	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	139080734	139080735	chr6:139080735:G:A	rs10872503	G	A	G	Sox3.mouse_HMG_3	1	1	+	2.6671984166476292	5.767328353084923	TGTGAATGCTATTATTA
chr6	139219458	139219459	chr6:139219459:T:C	rs183180242	T	C	T	Sox3.mouse_HMG_3	1	1	-	5.432498722291981	2.3323687858546878	GATGATTTGCATTCCTG
chr6	139354155	139354156	chr6:139354156:A:G	rs191597371	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	139406721	139406722	chr6:139406722:T:C	rs74539375	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr6	139638754	139638755	chr6:139638755:C:T	rs6917394	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr6	139762278	139762279	chr6:139762279:G:T	rs17069288	G	T	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr6	139927217	139927218	chr6:139927218:T:C	rs76378876	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr6	139991454	139991455	chr6:139991455:C:T	rs10499215	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr6	140101751	140101752	chr6:140101752:G:A	chr6:140101752:G:A	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr6	140486421	140486422	chr6:140486422:A:G	rs150847579	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr6	140621412	140621413	chr6:140621413:C:T	rs7773113	C	T	c	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr6	140661767	140661768	chr6:140661768:A:C	rs9321781	A	C	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr6	141161405	141161406	chr6:141161406:C:A	rs78584677	C	A	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	141238968	141238969	chr6:141238969:G:A	rs6928489	G	A	G	Sox3.mouse_HMG_3	3	1	+	3.0907347949058765	-2.6908300926233544	CATGAATGTGATACAAA
chr6	142112827	142112828	chr6:142112828:G:T	rs369532260	G	T	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	142242264	142242265	chr6:142242265:A:G	rs7761913	A	G	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	142387526	142387527	chr6:142387527:G:A	rs73580445	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	142415181	142415182	chr6:142415182:T:C	rs182040723	T	C	T	Sox3.mouse_HMG_3	1	1	-	3.4733656116255798	0.3732356751882875	TATAAATGTTTTTCAAA
chr6	142820554	142820555	chr6:142820555:A:G	rs117346551	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr6	142839933	142839934	chr6:142839934:G:A	rs198651	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	143234923	143234924	chr6:143234924:G:A	rs17072335	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr6	143268072	143268073	chr6:143268073:A:G	rs9390073	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr6	143329748	143329749	chr6:143329749:A:T	rs9399438	A	T	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr6	143566774	143566775	chr6:143566775:C:A	rs9484767	C	A	C	Sox3.mouse_HMG_3	16	1	+	7.5527157676729875	9.570631566897763	AATGAATTCCAGACATC
chr6	143566790	143566791	chr6:143566791:C:T	rs9484768	C	T	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr6	143697601	143697602	chr6:143697602:A:G	rs112282354	A	G	A	Sox3.mouse_HMG_3	14	1	+	3.678429901175518	-2.703516265251392	TATGAGTGTTAATCATC
chr6	143842834	143842835	chr6:143842835:C:T	rs140664741	C	T	C	Sox3.mouse_HMG_3	8	1	-	1.285235671661415	0.662119024483601	CATGAACTGCTTTCATC
chr6	143986788	143986789	chr6:143986789:C:T	rs12660374	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr6	144263885	144263886	chr6:144263886:G:A	rs7748053	G	A	A	Sox3.mouse_HMG_3	14	1	+	3.3611683821011358	9.743114548528048	TATGTATTATATTCGTT
chr6	144590706	144590707	chr6:144590707:C:T	rs114530236	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr6	144597755	144597756	chr6:144597756:G:A	rs1918745	G	A	A	Sox3.mouse_HMG_3	3	1	+	2.41964897267131	-3.3619159148579234	TGTGAAGCCCATTCATA
chr6	144886816	144886817	chr6:144886817:C:T	rs62429687	C	T	C	Sox3.mouse_HMG_3	13	1	+	3.011037633350049	-3.596222977111972	GGAGAATGAGAGTCATA
chr6	144907926	144907927	chr6:144907927:T:C	rs4896763	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr6	144954093	144954094	chr6:144954094:G:A	rs9390264	G	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	144957378	144957379	chr6:144957379:T:A	rs150056988	T	A	T	Sox3.mouse_HMG_3	5	1	+	3.156578176696221	9.76401884117493	GATGATCTATAGTCATG
chr6	144957391	144957392	chr6:144957392:A:G	rs7773726	A	G	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr6	145110519	145110520	chr6:145110520:G:T	rs621529	G	T	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr6	145113334	145113335	chr6:145113335:C:T	rs572490	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	145113335	145113336	chr6:145113336:C:T	rs12200054	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr6	145408353	145408354	chr6:145408354:T:C	rs9376932	T	C	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr6	145483247	145483248	chr6:145483248:C:T	rs12197582	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr6	145669857	145669858	chr6:145669858:C:T	rs980372467	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr6	145669892	145669893	chr6:145669893:T:C	rs702306	T	C	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr6	145963606	145963607	chr6:145963607:G:A	rs117100009	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr6	146361625	146361626	chr6:146361626:A:G	rs2268663	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr6	146850363	146850364	chr6:146850364:G:A	rs9322078	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr6	146926013	146926014	chr6:146926014:G:A	rs77646177	G	A	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr6	147172852	147172853	chr6:147172853:C:T	rs2818866	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr6	147177497	147177498	chr6:147177498:T:A	rs76681091	T	A	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr6	147206231	147206232	chr6:147206232:A:G	rs148421027	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr6	147209944	147209945	chr6:147209945:G:T	rs2786189	G	T	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr6	147285023	147285024	chr6:147285024:A:G	rs77912184	A	G	A	Sox3.mouse_HMG_3	15	1	-	6.053062955818902	1.3386695441038339	CCAGAATTTCATTCATA
chr6	147627620	147627621	chr6:147627621:A:G	rs56327851	A	G	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	147974891	147974892	chr6:147974892:G:A	rs17589656	G	A	G	Sox3.mouse_HMG_3	1	1	-	3.926158063646615	5.1329407693134135	ACTGAAGTCCATTCAAA
chr6	148329257	148329258	chr6:148329258:C:A	rs2493910	C	A	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr6	148608950	148608951	chr6:148608951:C:A	rs2208833	C	A	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr6	148617171	148617172	chr6:148617172:C:T	rs17078502	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr6	148629401	148629402	chr6:148629402:A:G	rs6909491	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	148943797	148943798	chr6:148943798:T:G	rs6941568	T	G	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	148945739	148945740	chr6:148945740:C:T	rs6941730	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	149076220	149076221	chr6:149076221:A:G	rs147943299	A	G	A	Sox3.mouse_HMG_3	5	1	+	3.0848328928400663	-3.4040020292307975	TATCAATCATATTCAAA
chr6	149119737	149119738	chr6:149119738:A:G	rs4308587	A	G	A	Sox3.mouse_HMG_3	8	1	-	5.053797935220977	5.315917680137083	CATGAATTTAAGTCAAT
chr6	149167279	149167280	chr6:149167280:T:C	rs35694796	T	C	T	Sox3.mouse_HMG_3	8	1	+	0.3809207338542573	0.6430404787703632	GCTGAATGTCAGCCTTG
chr6	149182422	149182423	chr6:149182423:G:A	rs182606398	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr6	149285751	149285752	chr6:149285752:G:T	rs9485371	G	T	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr6	149314663	149314664	chr6:149314664:T:C	rs201641387	T	C	t	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr6	149616920	149616921	chr6:149616921:A:C	rs9766037	A	C	a	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr6	149686940	149686941	chr6:149686941:T:C	rs147487922	T	C	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	150169780	150169781	chr6:150169781:A:G	rs9397708	A	G	A	Sox3.mouse_HMG_3	6	1	-	9.428224120065204	2.8202734785244052	AATAAATGATAGTCATT
chr6	150256902	150256903	chr6:150256903:A:G	rs116742209	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr6	150256929	150256930	chr6:150256930:C:T	rs114438361	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr6	150256930	150256931	chr6:150256931:A:G	rs9384299	A	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr6	150301374	150301375	chr6:150301375:C:T	rs9480183	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr6	150322893	150322894	chr6:150322894:C:T	rs12527319	C	T	C	Sox3.mouse_HMG_3	16	1	-	3.1977771564129664	3.161836699960441	TCTGGATTTTAGTCAAG
chr6	150329220	150329221	chr6:150329221:A:G	rs78038575	A	G	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	150427246	150427247	chr6:150427247:A:G	rs12663702	A	G	A	Sox3.mouse_HMG_3	6	1	-	3.03891640521805	-3.5690342363227465	AATGCATGATAGTTATG
chr6	150721768	150721769	chr6:150721769:G:A	rs6940569	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	150880438	150880439	chr6:150880439:A:G	rs4869952	A	G	G	Sox3.mouse_HMG_3	2	1	-	1.0303503965095566	-5.5755287217213745	AATGAAATCCTGTCATT
chr6	150940402	150940403	chr6:150940403:G:A	rs4869959	G	A	G	Sox3.mouse_HMG_3	16	1	-	3.2244430241027895	4.091369763575068	CATGAATGGTACCCATC
chr6	150992780	150992781	chr6:150992781:G:A	rs117106795	G	A	G	Sox3.mouse_HMG_3	8	1	+	1.8867068071505897	1.2635901599727766	GTTGAATGGTAGGGATG
chr6	151056920	151056921	chr6:151056921:T:C	rs117922034	T	C	C	Sox3.mouse_HMG_3	9	1	+	5.838764102969233	5.831127425977486	AATGAATTTTTTTCAGT
chr6	151247806	151247807	chr6:151247807:T:C	rs6934340	T	C	C	Sox3.mouse_HMG_3	15	1	+	1.7817841696958838	-2.9326092420191845	ACTGGATGGTATACATG
chr6	151294590	151294591	chr6:151294591:A:G	rs1124264	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr6	151379905	151379906	chr6:151379906:C:T	rs12525200	C	T	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	151457306	151457307	chr6:151457307:A:G	rs78376808	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr6	151706819	151706820	chr6:151706820:T:C	rs851980	T	C	T	Sox3.mouse_HMG_3	5	1	-	6.2817902654719004	-0.20704465659896387	ACTGAATAGCAGTCATG
chr6	152097439	152097440	chr6:152097440:T:C	rs3778099	T	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr6	152775367	152775368	chr6:152775368:G:T	rs1410489	G	T	G	Sox3.mouse_HMG_3	8	1	-	1.6527855039969523	1.4724515254970703	GTGGAATTCCATTTATG
chr6	152782149	152782150	chr6:152782150:T:A	rs646661	T	A	T	Sox3.mouse_HMG_3	6	1	+	2.3077831067823373	-4.443268378399131	TGTTAATCCTATTCATG
chr6	152859207	152859208	chr6:152859208:C:T	rs9371640	C	T	T	Sox3.mouse_HMG_3	16	1	-	2.94146491905844	2.9055244626059142	TAGGAATTGGATTCAGG
chr6	152859208	152859209	chr6:152859209:C:T	rs561558	C	T	C	Sox3.mouse_HMG_3	15	1	-	2.94146491905844	3.8002462659148604	TAGGAATTGGATTCAGG
chr6	152874501	152874502	chr6:152874502:C:T	rs9371270	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr6	152916140	152916141	chr6:152916141:A:C	rs9397568	A	C	C	Sox3.mouse_HMG_3	9	1	-	4.237472605875484	-1.110093078490826	TAATAATGTTAGTCATG
chr6	153209246	153209247	chr6:153209247:G:C	rs317074	G	C	C	Sox3.mouse_HMG_3	8	1	+	0.9920453573545533	0.5492626886766214	GTTGATTTGCAGTCTTA
chr6	153367771	153367772	chr6:153367772:C:T	rs1221922	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr6	153492049	153492050	chr6:153492050:C:T	rs12525348	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr6	153684841	153684842	chr6:153684842:C:T	rs2350396	C	T	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	153988426	153988427	chr6:153988427:G:A	rs114987492	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr6	153988458	153988459	chr6:153988459:A:G	rs1675903	A	G	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	154140138	154140139	chr6:154140139:T:C	rs12660296	T	C	T	Sox3.mouse_HMG_3	6	1	+	5.449548739080425	-1.1584019024603716	AGTGAATGGGAGTCAGG
chr6	154245607	154245608	chr6:154245608:G:T	rs11155954	G	T	G	Sox3.mouse_HMG_3	0	1	-	7.828873610340811	8.727381208331085	CATGCATGTCATTCAAG
chr6	154247040	154247041	chr6:154247041:G:C	rs9322453	G	C	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr6	154262244	154262245	chr6:154262245:T:C	rs7761411	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr6	154262266	154262267	chr6:154262267:A:G	rs7757439	A	G	A	Sox3.mouse_HMG_3	2	1	-	10.743569037485635	4.137689919254705	AATGAATTCTATTCTTA
chr6	154302071	154302072	chr6:154302072:C:A	rs73571021	C	A	C	Sox3.mouse_HMG_3	16	1	+	2.3843583322855992	4.402274131510374	AATAAATGAGATTCAAC
chr6	154418465	154418466	chr6:154418466:C:G	rs9479841	C	G	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr6	154670453	154670454	chr6:154670454:C:T	rs62434226	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	154815443	154815444	chr6:154815444:A:G	rs7763063	A	G	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr6	154896622	154896623	chr6:154896623:A:G	rs6557381	A	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	154951825	154951826	chr6:154951826:T:C	rs17636683	T	C	T	Sox3.mouse_HMG_3	15	1	-	1.3618905210288756	0.5031091741724552	CATGGATGGTAGACAAG
chr6	155041678	155041679	chr6:155041679:T:C	rs1564920	T	C	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr6	155190979	155190980	chr6:155190980:A:G	rs2352421	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr6	155282536	155282537	chr6:155282537:A:G	rs12216139	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr6	155484146	155484147	chr6:155484147:C:T	rs7738860	C	T	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	155586348	155586349	chr6:155586349:A:G	rs62427469	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr6	155611921	155611922	chr6:155611922:C:A	rs1846372	C	A	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr6	156193405	156193406	chr6:156193406:C:T	rs11156089	C	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	156193463	156193464	chr6:156193464:G:T	rs12191984	G	T	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr6	156551674	156551675	chr6:156551675:G:A	rs73571206	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr6	156791034	156791035	chr6:156791035:A:C	rs9372015	A	C	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr6	156845307	156845308	chr6:156845308:C:T	rs287899	C	T	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr6	156862917	156862918	chr6:156862918:A:T	rs12212399	A	T	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	156868621	156868622	chr6:156868622:A:T	rs12213563	A	T	A	Sox3.mouse_HMG_3	12	1	-	2.6000827724820157	-3.512728087245214	CATGAATGGTACTGAAG
chr6	156883296	156883297	chr6:156883297:C:A	rs9384507	C	A	C	Sox3.mouse_HMG_3	3	1	-	1.6369223230608363	-5.269572161453878	TATGAATATTAGGCAAA
chr6	156940710	156940711	chr6:156940711:G:A	rs6905411	G	A	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr6	157230096	157230097	chr6:157230097:C:A	rs9406310	C	A	C	Sox3.mouse_HMG_3	8	1	+	4.325830828685717	4.145496850185836	TATGAATTCCAAACATT
chr6	157432626	157432627	chr6:157432627:T:C	rs17165322	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr6	157453645	157453646	chr6:157453646:C:T	rs9457514	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr6	157473083	157473084	chr6:157473084:G:C	rs241581	G	C	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr6	157483277	157483278	chr6:157483278:T:C	rs150664548	T	C	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr6	157580092	157580093	chr6:157580093:G:C	rs2217446	G	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr6	157629548	157629549	chr6:157629549:A:G	rs62423249	A	G	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr6	157722149	157722150	chr6:157722150:T:C	rs614079	T	C	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr6	157882555	157882556	chr6:157882556:G:A	rs2746219	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr6	157940866	157940867	chr6:157940867:C:T	rs912879	C	T	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	157994649	157994650	chr6:157994650:C:T	rs188078173	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	158211675	158211676	chr6:158211676:A:G	rs9366023	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr6	158259649	158259650	chr6:158259650:A:G	rs9459828	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr6	158311786	158311787	chr6:158311787:T:G	rs9456285	T	G	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr6	158354299	158354300	chr6:158354300:A:G	rs705953	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr6	158371228	158371229	chr6:158371229:C:A	rs11756453	C	A	C	Sox3.mouse_HMG_3	3	1	-	4.4629632976944675	-2.4435311868202465	GAAGAATGTTACTCAAA
chr6	158409661	158409662	chr6:158409662:A:T	rs189643905	A	T	A	Sox3.mouse_HMG_3	5	1	+	3.767517021658211	-2.8399236428205006	TGTGAATTATAGACAGG
chr6	158465697	158465698	chr6:158465698:C:T	rs140465978	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	158465709	158465710	chr6:158465710:T:C	rs11755760	T	C	T	Sox3.mouse_HMG_3	1	1	+	3.889719020014735	2.682936314347935	GTTGAATTACAGTCTGG
chr6	158474941	158474942	chr6:158474942:T:C	rs7759723	T	C	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr6	158474973	158474974	chr6:158474974:C:G	rs627967	C	G	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr6	158796525	158796526	chr6:158796526:G:A	rs7760064	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr6	158911175	158911176	chr6:158911176:G:A	rs76100675	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr6	158971320	158971321	chr6:158971321:C:T	rs10455835	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr6	158988008	158988009	chr6:158988009:C:T	rs4709255	C	T	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	158988025	158988026	chr6:158988026:G:A	rs4709256	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.1830569650844551	-4.598507922444776	GAAGAATTCCCTTCAAC
chr6	159049209	159049210	chr6:159049210:G:T	rs212408	G	T	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr6	159110811	159110812	chr6:159110812:T:G	rs7754714	T	G	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr6	159182467	159182468	chr6:159182468:T:C	rs73593351	T	C	C	Sox3.mouse_HMG_3	0	1	+	8.357468548553445	6.902597903216581	TTTGAATTCCATTAATG
chr6	159229689	159229690	chr6:159229690:C:T	rs57447691	C	T	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr6	159465131	159465132	chr6:159465132:A:G	rs4709330	A	G	G	Sox3.mouse_HMG_3	11	1	-	1.6735261351242763	-4.4110846909776695	TGTGATTTACATACATA
chr6	159578153	159578154	chr6:159578154:G:T	rs10945621	G	T	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr6	159578190	159578191	chr6:159578191:A:G	rs12194439	A	G	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr6	159717843	159717844	chr6:159717844:A:C	rs2475565	A	C	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr6	159982523	159982524	chr6:159982524:T:A	rs3798202	T	A	T	Sox3.mouse_HMG_3	0	1	+	1.6560609128025545	1.0996978654559637	TGTGAATTTCACTTATG
chr6	160088563	160088564	chr6:160088564:T:C	chr6:160088564:T:C	T	C	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr6	160198647	160198648	chr6:160198648:T:A	rs3912160	T	A	T	Sox3.mouse_HMG_3	2	1	+	2.628983678877643	-3.098345035461981	CTTGAATTTCAATCAGT
chr6	160275679	160275680	chr6:160275680:C:T	rs139010364	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr6	160294825	160294826	chr6:160294826:C:A	rs3120152	C	A	c	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr6	160328988	160328989	chr6:160328989:C:T	rs2457562	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr6	160596087	160596088	chr6:160596088:G:T	rs9456552	G	T	.	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr6	160798733	160798734	chr6:160798734:T:G	rs116047615	T	G	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	160820856	160820857	chr6:160820857:A:G	rs2565724	A	G	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr6	161032361	161032362	chr6:161032362:A:G	rs4709486	A	G	G	Sox3.mouse_HMG_3	5	1	+	1.2586970104709825	-5.230137911599883	TATGAATGGTATCAAGC
chr6	161214911	161214912	chr6:161214912:A:G	rs16892311	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	161257708	161257709	chr6:161257709:T:C	rs73019329	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	161257718	161257719	chr6:161257719:A:C	rs9458173	A	C	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr6	161308286	161308287	chr6:161308287:G:A	rs12206835	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr6	161308298	161308299	chr6:161308299:G:C	rs12206836	G	C	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr6	161353774	161353775	chr6:161353775:C:T	rs117687416	C	T	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr6	161369671	161369672	chr6:161369672:C:T	rs537335440	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr6	161583698	161583699	chr6:161583699:G:A	rs994465	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr6	161632202	161632203	chr6:161632203:A:G	rs9456692	A	G	A	Sox3.mouse_HMG_3	8	1	+	2.3261764102746425	2.9492930574524565	TTTTAATGATAGTCACA
chr6	161640109	161640110	chr6:161640110:A:G	rs2315546	A	G	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	161814818	161814819	chr6:161814819:G:A	rs3016540	G	A	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr6	161891667	161891668	chr6:161891668:G:C	rs7756242	G	C	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr6	162099830	162099831	chr6:162099831:A:T	rs189835959	A	T	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr6	162201564	162201565	chr6:162201565:G:A	rs75263798	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr6	162230764	162230765	chr6:162230765:T:A	rs6910505	T	A	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr6	162854653	162854654	chr6:162854654:A:G	rs117786524	A	G	A	Sox3.mouse_HMG_3	2	1	-	4.949701601761871	-1.656177516469059	AATGAATGTCAGTTACA
chr6	163132280	163132281	chr6:163132281:A:G	rs520929	A	G	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr6	163284410	163284411	chr6:163284411:A:G	rs17470751	A	G	C	Sox3.mouse_HMG_3	4	1	+	3.0492865878847093	-3.33353014010936	CATGAATTTCTTCCATG
chr6	163309301	163309302	chr6:163309302:C:A	rs11757855	C	A	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	163342377	163342378	chr6:163342378:G:T	rs73603787	G	T	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr6	163367968	163367969	chr6:163367969:C:G	chr6:163367969:C:G	C	G	C	Sox3.mouse_HMG_3	13	1	-	6.906737009343234	13.51399761980525	AATGAATGACATTGAGT
chr6	163412502	163412503	chr6:163412503:T:A	rs2784865	T	A	T	Sox3.mouse_HMG_3	14	1	-	1.7884139679851472	-4.593532198441764	GCTGAATGCCCTACATG
chr6	163499286	163499287	chr6:163499287:A:G	rs73244787	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr6	163676316	163676317	chr6:163676317:C:A	rs35281400	C	A	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr6	163739506	163739507	chr6:163739507:A:C	rs141987439	A	C	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr6	163750831	163750832	chr6:163750832:T:A	rs755220441	T	A	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr6	163815168	163815169	chr6:163815169:C:A	rs77635798	C	A	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr6	163860464	163860465	chr6:163860465:T:C	rs56095211	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr6	163871897	163871898	chr6:163871898:T:C	rs16895468	T	C	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr6	164109835	164109836	chr6:164109836:A:G	rs6931934	A	G	A	Sox3.mouse_HMG_3	12	1	+	2.280436002369323	2.012172015774643	GGTGAATGCCAGACACT
chr6	164507314	164507315	chr6:164507315:T:C	rs11962134	T	C	T	Sox3.mouse_HMG_3	14	1	-	5.095526000070334	-1.286420166356576	AATGTATGACAATCATA
chr6	164507342	164507343	chr6:164507343:T:C	rs11752155	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr6	164564772	164564773	chr6:164564773:G:A	rs4709863	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr6	164795069	164795070	chr6:164795070:G:A	rs78564368	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr6	164882578	164882579	chr6:164882579:A:G	rs9347939	A	G	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr6	165652744	165652745	chr6:165652745:G:A	rs2983527	G	A	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr6	165700728	165700729	chr6:165700729:T:C	rs9355545	T	C	C	Sox3.mouse_HMG_3	15	1	-	9.031666196386293	8.172884849529872	CATAAATGCTATTCAAA
chr6	165783750	165783751	chr6:165783751:A:G	rs9364815	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr6	165823927	165823928	chr6:165823928:T:C	rs6905881	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	166068976	166068977	chr6:166068977:C:T	rs1900055	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr6	166202479	166202480	chr6:166202480:A:T	rs35299243	A	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr6	166202496	166202497	chr6:166202497:A:G	rs4709105	A	G	G	Sox3.mouse_HMG_3	7	1	-	3.485346482538855	-1.9180646974384645	GATGAAATGCTGTCATG
chr6	166432169	166432170	chr6:166432170:C:T	rs77156971	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr6	166573278	166573279	chr6:166573279:A:G	rs11755586	A	G	a	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr6	166755340	166755341	chr6:166755341:G:C	rs471953	G	C	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr6	166813751	166813752	chr6:166813752:G:A	rs1099648	G	A	G	Sox3.mouse_HMG_3	11	1	+	5.0156334303204915	0.3654587045143525	TAAGGATGCCAGTCATG
chr6	166855670	166855671	chr6:166855671:T:A	rs9355601	T	A	T	Sox3.mouse_HMG_3	16	1	-	3.278059384255357	2.127070324502861	GATGAATGTCATTTGAA
chr6	166976753	166976754	chr6:166976754:A:G	rs444210	A	G	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr6	166978461	166978462	chr6:166978462:T:C	rs189568909	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr6	167058362	167058363	chr6:167058363:A:C	rs6456151	A	C	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr6	167106633	167106634	chr6:167106634:C:T	rs55739710	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr6	167106634	167106635	chr6:167106635:G:A	rs111909252	G	A	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr6	167106680	167106681	chr6:167106681:C:A	rs192594775	C	A	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr6	167106681	167106682	chr6:167106682:A:G	rs184584230	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr6	167284607	167284608	chr6:167284608:C:T	rs9459960	C	T	t	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr6	167284618	167284619	chr6:167284619:A:C	rs9457295	A	C	a	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr6	167687443	167687444	chr6:167687444:T:C	rs62426006	T	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr6	167688495	167688496	chr6:167688496:G:A	rs62426007	G	A	G	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr6	167699765	167699766	chr6:167699766:G:A	rs1179994893	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr6	167745587	167745588	chr6:167745588:G:A	rs990617187	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr6	167790012	167790013	chr6:167790013:A:G	rs142332094	A	G	a	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr6	167920699	167920700	chr6:167920700:T:C	rs2040448	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr6	167932585	167932586	chr6:167932586:C:T	rs114428063	C	T	C	Sox3.mouse_HMG_3	9	1	+	3.812169268400039	3.819805945391785	GATAAATGCCATACAGG
chr6	168032009	168032010	chr6:168032010:T:C	rs73260877	T	C	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr6	168062084	168062085	chr6:168062085:C:T	rs3823460	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr6	168170156	168170157	chr6:168170157:T:C	rs11759166	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr6	168195212	168195213	chr6:168195213:C:T	rs12209471	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr6	168262077	168262078	chr6:168262078:G:A	rs185354008	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr6	168319243	168319244	chr6:168319244:C:T	rs4292501	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr6	168439483	168439484	chr6:168439484:T:C	rs75304237	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr6	168568393	168568394	chr6:168568394:A:G	rs9456200	A	G	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr6	168568890	168568891	chr6:168568891:A:T	rs2092937	A	T	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr6	168581003	168581004	chr6:168581004:A:G	rs9455665	A	G	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr6	168602086	168602087	chr6:168602087:T:C	rs2880405	T	C	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr6	168638816	168638817	chr6:168638817:T:C	rs10945529	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr6	168742618	168742619	chr6:168742619:C:T	rs909507	C	T	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr6	168828917	168828918	chr6:168828918:A:C	rs4708500	A	C	C	Sox3.mouse_HMG_3	12	1	-	2.1328802839091336	-4.248194562412777	AATACATGACATTCAGA
chr6	168883693	168883694	chr6:168883694:A:C	rs35693117	A	C	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr6	168904671	168904672	chr6:168904672:A:G	rs10945335	A	G	G	Sox3.mouse_HMG_3	16	1	-	4.479380779080811	3.6124540396085325	ACTGAATAATAGTCATT
chr6	168943213	168943214	chr6:168943214:T:C	rs4708561	T	C	C	Sox3.mouse_HMG_3	14	1	-	0.6126428182159063	-5.769303348211005	GGTGCAGGACAGTCATG
chr6	168944033	168944034	chr6:168944034:C:T	rs7760037	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr6	168967654	168967655	chr6:168967655:T:G	rs17181376	T	G	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr6	168968044	168968045	chr6:168968045:A:G	rs17786022	A	G	a	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr6	169247934	169247935	chr6:169247935:T:C	rs11756439	T	C	T	Sox3.mouse_HMG_3	11	1	+	5.7954230666168485	-0.2891877594850951	TATGAATGGTGTTTATG
chr6	169777929	169777930	chr6:169777930:C:G	rs7771373	C	G	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr6	169799984	169799985	chr6:169799985:G:T	rs9478112	G	T	G	Sox3.mouse_HMG_3	8	1	-	3.522788079315462	3.342454100815581	GATAAATTCTATTAAAA
chr6	169934394	169934395	chr6:169934395:C:T	rs905052600	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr6	170043363	170043364	chr6:170043364:C:A	rs9460107	C	A	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr6	170055453	170055454	chr6:170055454:A:C	rs12202971	A	C	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr6	170055470	170055471	chr6:170055471:A:C	rs12202978	A	C	C	Sox3.mouse_HMG_3	15	1	-	0.19956746982111573	-2.923023341272126	GGTGCATGGTGGTCATT
chr6	170112807	170112808	chr6:170112808:A:G	rs903630	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr6	170127529	170127530	chr6:170127530:C:T	rs117637904	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr6	170127530	170127531	chr6:170127531:G:A	rs78515075	G	A	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr6	170161199	170161200	chr6:170161200:T:C	rs77210917	T	C	C	Sox3.mouse_HMG_3	8	1	-	1.4377271062690398	2.0608437534468536	AATGAGTGAGAGTCAGG
chr6	170226191	170226192	chr6:170226192:G:A	rs1027199931	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr6	170231950	170231951	chr6:170231951:A:G	rs7770638	A	G	A	Sox3.mouse_HMG_3	8	1	-	4.1783571918981215	4.440476936814227	GAGGAATGTGATTCAAA
chr6	170422406	170422407	chr6:170422407:G:C	rs6456211	G	C	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr7	148816	148817	chr7:148817:C:G	rs6970236	C	G	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr7	231306	231307	chr7:231307:G:A	rs60281906	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr7	380967	380968	chr7:380968:A:G	rs140032324	A	G	a	Sox3.mouse_HMG_3	15	1	-	1.552356539435584	-3.1620368722794843	AGTGAAGGCTGTTCATG
chr7	506876	506877	chr7:506877:A:C	rs4074396	A	C	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr7	1020651	1020652	chr7:1020652:C:T	rs11763020	C	T	c	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	1185231	1185232	chr7:1185232:G:A	rs80291942	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr7	1847088	1847089	chr7:1847089:T:A	rs6977733	T	A	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr7	1854012	1854013	chr7:1854013:G:A	rs112058788	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr7	1854046	1854047	chr7:1854047:G:C	chr7:1854047:G:C	G	C	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr7	2213350	2213351	chr7:2213351:G:A	rs1002170	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr7	2354657	2354658	chr7:2354658:C:G	rs569784120	C	G	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr7	2354660	2354661	chr7:2354661:C:T	rs2301942	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr7	2354680	2354681	chr7:2354681:C:G	rs2301943	C	G	C	Sox3.mouse_HMG_3	0	1	-	1.71930181937852	-0.004489679758098886	GCTTAATTCCATTCAGC
chr7	2354696	2354697	chr7:2354697:A:T	rs77477547	A	T	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr7	2384167	2384168	chr7:2384168:C:T	rs10280755	C	T	C	Sox3.mouse_HMG_3	5	1	-	-0.20238017315417567	6.286454748916689	GCTGAGGGACAGTCATG
chr7	2822980	2822981	chr7:2822981:C:A	rs577164001	C	A	C	Sox3.mouse_HMG_3	11	1	-	7.191953302057392	8.626389402353201	GTTGAATTCCAGTAATG
chr7	3032089	3032090	chr7:3032090:C:T	rs7780254	C	T	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr7	3111062	3111063	chr7:3111063:G:A	rs4722426	G	A	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr7	3188940	3188941	chr7:3188941:A:G	rs17133145	A	G	g	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr7	3216777	3216778	chr7:3216778:T:C	rs62439547	T	C	T	Sox3.mouse_HMG_3	8	1	+	2.387600285043275	2.649720029959381	CATAAATGTTATTCTAA
chr7	3286448	3286449	chr7:3286449:T:A	rs181950476	T	A	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr7	3407818	3407819	chr7:3407819:G:A	rs56064609	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr7	3439330	3439331	chr7:3439331:T:A	rs1403162	T	A	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr7	3439338	3439339	chr7:3439339:C:T	rs1403163	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr7	3439365	3439366	chr7:3439366:C:T	rs185495713	C	T	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr7	3660707	3660708	chr7:3660708:C:T	rs10260149	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr7	3928162	3928163	chr7:3928163:A:C	rs17134054	A	C	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr7	4034365	4034366	chr7:4034366:C:T	rs10237838	C	T	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr7	4054624	4054625	chr7:4054625:T:C	rs2342497	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr7	4081945	4081946	chr7:4081946:A:G	rs11979803	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr7	4376970	4376971	chr7:4376971:G:C	rs73671472	G	C	G	Sox3.mouse_HMG_3	11	1	+	1.357027375342899	-3.2931473504632387	CGTGAGTTGCAGTCAAC
chr7	4448321	4448322	chr7:4448322:G:C	rs314599	G	C	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr7	4843489	4843490	chr7:4843490:T:C	rs17135213	T	C	T	Sox3.mouse_HMG_3	15	1	-	1.2693976245602172	0.4106162777037967	AATGATTTTCTTTCAAG
chr7	5182526	5182527	chr7:5182527:C:A	rs10261990	C	A	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	5446450	5446451	chr7:5446451:A:G	rs4236391	A	G	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr7	5831694	5831695	chr7:5831695:T:C	rs117834553	T	C	.	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	5865537	5865538	chr7:5865538:C:T	rs12667171	C	T	.	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr7	5987356	5987357	chr7:5987357:G:A	rs1805321	G	A	.	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr7	6020986	6020987	chr7:6020987:A:C	rs2345055	A	C	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr7	6022894	6022895	chr7:6022895:G:A	rs3801031	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr7	6022896	6022897	chr7:6022897:T:G	rs3801032	T	G	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	6370896	6370897	chr7:6370897:A:G	rs4724800	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	6438708	6438709	chr7:6438709:G:C	rs73342954	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr7	6506387	6506388	chr7:6506388:G:A	rs75926488	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr7	6602275	6602276	chr7:6602276:A:T	rs7808982	A	T	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr7	6929217	6929218	chr7:6929218:C:G	rs9770219	C	G	.	Sox3.mouse_HMG_3	0	1	-	2.2059786232856915	0.4821871241490725	GCTGAATCCCATCCATG
chr7	7159838	7159839	chr7:7159839:G:C	rs137980438	G	C	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr7	7385822	7385823	chr7:7385823:C:T	rs73674516	C	T	C	Sox3.mouse_HMG_3	3	1	-	3.051360040202744	-2.730204847326485	AATGAATTGCCTTTATT
chr7	7492911	7492912	chr7:7492912:A:G	rs7459128	A	G	A	Sox3.mouse_HMG_3	6	1	-	3.718534757047039	-2.8894158844937587	TGAGAATGTCAGTCAAC
chr7	7565014	7565015	chr7:7565015:C:T	rs115300490	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	7565024	7565025	chr7:7565025:G:A	rs972600	G	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr7	7667811	7667812	chr7:7667812:T:C	rs13232471	T	C	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr7	7667851	7667852	chr7:7667852:A:G	rs17169379	A	G	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr7	7697075	7697076	chr7:7697076:G:C	rs74960414	G	C	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr7	7760582	7760583	chr7:7760583:A:G	rs11764499	A	G	a	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr7	7972273	7972274	chr7:7972274:A:G	rs74577698	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr7	8121570	8121571	chr7:8121571:T:C	rs7793383	T	C	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr7	8199724	8199725	chr7:8199725:A:G	rs56306201	A	G	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	8439451	8439452	chr7:8439452:C:T	rs767661	C	T	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr7	8520571	8520572	chr7:8520572:T:C	rs2057750	T	C	C	Sox3.mouse_HMG_3	14	1	-	2.3046347342660822	-4.077311432160828	GATGATGTTCATTCATC
chr7	8522314	8522315	chr7:8522315:T:C	rs2040765	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr7	8522329	8522330	chr7:8522330:A:G	rs2040766	A	G	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr7	8648470	8648471	chr7:8648471:C:T	rs6949582	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	8914227	8914228	chr7:8914228:A:G	rs10486269	A	G	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr7	8938406	8938407	chr7:8938407:T:G	rs10269033	T	G	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	8975977	8975978	chr7:8975978:T:C	rs4725150	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr7	8976020	8976021	chr7:8976021:T:C	rs16875030	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	9023758	9023759	chr7:9023759:G:T	rs10262777	G	T	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr7	9128407	9128408	chr7:9128408:G:T	rs293191	G	T	t	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr7	9283258	9283259	chr7:9283259:G:T	rs10952153	G	T	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	9283259	9283260	chr7:9283260:C:T	rs10952154	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr7	9352105	9352106	chr7:9352106:C:T	rs17206741	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr7	9602784	9602785	chr7:9602785:C:G	rs2657247	C	G	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr7	9627871	9627872	chr7:9627872:T:G	rs11763802	T	G	T	Sox3.mouse_HMG_3	14	1	-	4.366719542738265	-2.015226623688646	AATAAAGTTTATTCATG
chr7	9856855	9856856	chr7:9856856:T:C	rs10260827	T	C	T	Sox3.mouse_HMG_3	2	1	+	5.463124528196425	-1.1427545900345066	TTTGAATTTCCTTCAAG
chr7	9945595	9945596	chr7:9945596:T:C	rs75380147	T	C	T	Sox3.mouse_HMG_3	11	1	+	2.382563589749822	-3.702047236352123	TTTGAATGCTGTTGATG
chr7	9960322	9960323	chr7:9960323:C:T	rs56147953	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr7	10894394	10894395	chr7:10894395:A:G	rs28550415	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr7	11234350	11234351	chr7:11234351:T:C	rs2714405	T	C	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	11466911	11466912	chr7:11466912:C:T	rs2240049	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr7	11520734	11520735	chr7:11520735:A:G	rs1023525	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr7	11540165	11540166	chr7:11540166:G:A	rs10242744	G	A	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr7	11707796	11707797	chr7:11707797:T:G	rs892599474	T	G	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr7	11729683	11729684	chr7:11729684:T:C	rs1526558	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr7	11738006	11738007	chr7:11738007:G:A	rs138669544	G	A	G	Sox3.mouse_HMG_3	3	1	+	3.6769979635164884	-2.104566924012742	AATGTATTTCATTTATG
chr7	11760457	11760458	chr7:11760458:G:A	rs57645050	G	A	G	Sox3.mouse_HMG_3	7	1	+	1.1830101410998997	-5.37053857355783	TGTGAATGTTCCTCATT
chr7	12080231	12080232	chr7:12080232:A:T	rs17648896	A	T	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr7	12123493	12123494	chr7:12123494:A:T	rs1003432	A	T	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr7	12138507	12138508	chr7:12138508:G:T	rs4721045	G	T	T	Sox3.mouse_HMG_3	8	1	+	4.05335631795117	3.3484539043571306	CATGAATTGTCTTCACT
chr7	12197673	12197674	chr7:12197674:G:C	rs967126	G	C	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr7	12210509	12210510	chr7:12210510:G:A	rs73299028	G	A	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	12389114	12389115	chr7:12389115:G:A	rs848017	G	A	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr7	12437212	12437213	chr7:12437213:T:C	rs17444465	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	12466272	12466273	chr7:12466273:G:A	rs887066	G	A	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr7	12468650	12468651	chr7:12468651:A:T	rs847963	A	T	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	12530750	12530751	chr7:12530751:G:A	rs4365982	G	A	A	Sox3.mouse_HMG_3	5	1	+	2.149942262493415	8.63877718456428	AGTGAGTGACACTCATG
chr7	12588272	12588273	chr7:12588273:G:A	rs76515721	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr7	12718526	12718527	chr7:12718527:G:A	rs4719328	G	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr7	12771527	12771528	chr7:12771528:A:G	rs73681503	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr7	12771896	12771897	chr7:12771897:G:T	rs775008583	G	T	G	Sox3.mouse_HMG_3	16	1	+	0.8975400131212365	-0.2893895030837853	AATGAATTCCTTTAAGG
chr7	12851686	12851687	chr7:12851687:C:T	rs7790527	C	T	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr7	12863645	12863646	chr7:12863646:T:G	rs4288268	T	G	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr7	12930033	12930034	chr7:12930034:T:G	rs116906555	T	G	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr7	12957507	12957508	chr7:12957508:G:T	rs117067536	G	T	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr7	13061250	13061251	chr7:13061251:T:C	rs13245067	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr7	13198222	13198223	chr7:13198223:T:C	rs194025	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr7	13357121	13357122	chr7:13357122:C:T	rs1469637	C	T	T	Sox3.mouse_HMG_3	5	1	-	2.579196737574472	9.068031659645337	AATTAGTTCTATTCATT
chr7	13411738	13411739	chr7:13411739:A:T	rs192059188	A	T	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr7	13462904	13462905	chr7:13462905:C:A	rs10266590	C	A	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr7	13508726	13508727	chr7:13508727:A:T	rs2692484	A	T	A	Sox3.mouse_HMG_3	14	1	+	0.6590605490692107	-5.722885617357701	GTTGAAATGCAGTGATG
chr7	13603847	13603848	chr7:13603848:G:A	rs139855498	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr7	13832667	13832668	chr7:13832668:T:G	rs12699562	T	G	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr7	13908400	13908401	chr7:13908401:C:G	rs17736124	C	G	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	13985535	13985536	chr7:13985536:C:T	rs57331876	C	T	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr7	14224690	14224691	chr7:14224691:C:T	rs56836294	C	T	C	Sox3.mouse_HMG_3	16	1	+	2.4836407846375317	3.3505675241098105	TGTGAATTCTAGTCCAC
chr7	14288703	14288704	chr7:14288704:T:C	rs17168044	T	C	T	Sox3.mouse_HMG_3	9	1	+	4.135247064516249	4.127610387524502	TTTGATTGTTAGTCAGA
chr7	14385313	14385314	chr7:14385314:T:G	rs10245285	T	G	T	Sox3.mouse_HMG_3	2	1	+	2.853361063465494	-3.89561889840611	TATTAATGGCACTCAGA
chr7	14446142	14446143	chr7:14446143:C:G	rs59778011	C	G	G	Sox3.mouse_HMG_3	8	1	-	0.9964402685608911	0.5536575998829592	AGGGAATTGCCTTCATG
chr7	14504530	14504531	chr7:14504531:T:C	rs12533779	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr7	14504561	14504562	chr7:14504562:A:G	rs10256038	A	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr7	14691169	14691170	chr7:14691170:T:G	rs12699655	T	G	t	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr7	14833694	14833695	chr7:14833695:G:T	rs7790062	G	T	C	Sox3.mouse_HMG_3	7	1	+	3.7933939946719475	2.943361052441876	CATGCATGACATGCATG
chr7	15043435	15043436	chr7:15043436:G:A	rs218080	G	A	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr7	15084582	15084583	chr7:15084583:A:G	rs17379758	A	G	A	Sox3.mouse_HMG_3	0	1	-	2.2212265962913738	0.7663559509545084	TGTAAATTCCATTGATG
chr7	15085403	15085404	chr7:15085404:A:G	rs556557226	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr7	15085405	15085406	chr7:15085406:C:T	rs917798	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	15225692	15225693	chr7:15225693:G:C	rs7778853	G	C	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr7	15335580	15335581	chr7:15335581:A:C	chr7:15335581:A:C	A	C	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr7	15342349	15342350	chr7:15342350:C:T	rs6967336	C	T	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr7	15400482	15400483	chr7:15400483:C:T	rs4721433	C	T	T	Sox3.mouse_HMG_3	14	1	+	1.117793812237844	1.117793812237844	TATGAGTGTCATTCCGT
chr7	15400492	15400493	chr7:15400493:A:G	rs4719444	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr7	15559045	15559046	chr7:15559046:A:C	rs78741498	A	C	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr7	15608101	15608102	chr7:15608102:G:T	rs17168895	G	T	G	Sox3.mouse_HMG_3	7	1	+	4.031302616270045	3.1812696740399735	GAGGATTGTTATTCATT
chr7	15649221	15649222	chr7:15649222:A:C	rs10228856	A	C	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr7	15856558	15856559	chr7:15856559:G:A	rs76279145	G	A	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr7	15937321	15937322	chr7:15937322:A:T	rs10225607	A	T	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr7	15937322	15937323	chr7:15937323:T:C	rs10270667	T	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	15938007	15938008	chr7:15938008:T:A	rs10274526	T	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr7	16052429	16052430	chr7:16052430:T:A	rs4721471	T	A	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr7	16061046	16061047	chr7:16061047:T:C	rs11769952	T	C	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr7	16123148	16123149	chr7:16123149:G:A	rs17359183	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr7	16189267	16189268	chr7:16189268:T:C	rs4001545	T	C	C	Sox3.mouse_HMG_3	4	1	-	2.3453538710723736	-4.037462856921695	CAGTAATTTTATTCATG
chr7	16189283	16189284	chr7:16189284:G:A	rs17169323	G	A	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	16204302	16204303	chr7:16204303:A:G	rs11761915	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr7	16215536	16215537	chr7:16215537:C:T	rs56161298	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr7	16224223	16224224	chr7:16224224:A:C	rs1918269	A	C	C	Sox3.mouse_HMG_3	7	1	-	7.314458779652689	8.164491721882762	AATGAATTCTAGACAAA
chr7	16224225	16224226	chr7:16224226:T:A	rs1527216	T	A	A	Sox3.mouse_HMG_3	5	1	-	7.314458779652689	0.7070181151739778	AATGAATTCTAGACAAA
chr7	16345138	16345139	chr7:16345139:A:G	rs2158486	A	G	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	16404917	16404918	chr7:16404918:C:A	rs186009387	C	A	C	Sox3.mouse_HMG_3	0	1	-	4.626920210191348	4.357999356391594	GATAAATGGTATTTAAG
chr7	16413153	16413154	chr7:16413154:T:C	rs74345653	T	C	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr7	16417249	16417250	chr7:16417250:C:T	rs79240539	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr7	16428481	16428482	chr7:16428482:C:G	rs1882382	C	G	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr7	16493094	16493095	chr7:16493095:A:G	rs2158792	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.5486484443705915	-0.5514814920666987	TATGAATTGTGGTAATT
chr7	16670940	16670941	chr7:16670941:A:G	rs11763990	A	G	A	Sox3.mouse_HMG_3	6	1	-	2.412309746493546	-4.195640895047251	GAAGAATGGCATTCCCA
chr7	16685462	16685463	chr7:16685463:G:T	rs17626550	G	T	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr7	16697360	16697361	chr7:16697361:A:T	rs35397611	A	T	A	Sox3.mouse_HMG_3	5	1	+	1.2534810703967232	-5.353959594081988	GTTGGATTGCAGGCATG
chr7	16697376	16697377	chr7:16697377:A:T	rs35618693	A	T	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr7	16847202	16847203	chr7:16847203:C:T	rs1525743	C	T	c	Sox3.mouse_HMG_3	1	1	-	4.269566012263793	7.369695948701086	AGTGAGTTATATTCAGG
chr7	17037882	17037883	chr7:17037883:G:C	rs13238728	G	C	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr7	17042331	17042332	chr7:17042332:G:A	rs74698823	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	17042356	17042357	chr7:17042357:A:G	rs17345341	A	G	A	Sox3.mouse_HMG_3	14	1	+	2.274181907646139	-4.1077642587807714	TATGTATTGCATACAGA
chr7	17126532	17126533	chr7:17126533:A:C	rs34490654	A	C	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr7	17235972	17235973	chr7:17235973:T:C	rs12539940	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	17239717	17239718	chr7:17239718:T:G	rs73680637	T	G	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr7	17404549	17404550	chr7:17404550:T:C	rs566263978	T	C	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr7	17531286	17531287	chr7:17531287:T:G	rs139475333	T	G	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr7	17546817	17546818	chr7:17546818:A:G	rs117043877	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	17773114	17773115	chr7:17773115:C:T	rs2110015	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr7	17919510	17919511	chr7:17919511:C:A	rs2714858	C	A	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr7	18224885	18224886	chr7:18224886:C:T	rs73681731	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	18279038	18279039	chr7:18279039:C:T	rs56221959	C	T	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr7	18390521	18390522	chr7:18390522:A:T	rs116314955	A	T	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	18610628	18610629	chr7:18610629:T:A	rs541984779	T	A	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr7	18698626	18698627	chr7:18698627:T:C	rs78785747	T	C	T	Sox3.mouse_HMG_3	16	1	+	7.408523656457545	6.541596916985267	AGTGAATGGCTTTCATT
chr7	18736232	18736233	chr7:18736233:T:C	rs57312000	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr7	18857222	18857223	chr7:18857223:G:A	rs35041323	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr7	19177267	19177268	chr7:19177268:T:C	rs181643436	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr7	19177384	19177385	chr7:19177385:G:A	rs191599846	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	19215016	19215017	chr7:19215017:T:C	rs10264031	T	C	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr7	19437648	19437649	chr7:19437649:G:A	rs6979828	G	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr7	19521695	19521696	chr7:19521696:A:G	rs116992456	A	G	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	19576136	19576137	chr7:19576137:G:A	rs7802880	G	A	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	19620876	19620877	chr7:19620877:A:G	rs17141738	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.2212448007315024	-5.386705840809293	CATTAATGATTTTCATC
chr7	19707941	19707942	chr7:19707942:G:A	chr7:19707942:G:A	G	A	G	Sox3.mouse_HMG_3	13	1	-	0.6242613668596995	-5.982999243602321	CATGATTGCCCTTCAGG
chr7	19708412	19708413	chr7:19708413:G:C	rs73680669	G	C	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr7	19961651	19961652	chr7:19961652:G:T	rs13221825	G	T	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	20034204	20034205	chr7:20034205:G:A	rs38128	G	A	G	Sox3.mouse_HMG_3	9	1	-	4.733249284204644	4.74088596119639	AATGCATTGCATACATG
chr7	20087341	20087342	chr7:20087342:A:G	rs7786493	A	G	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr7	20108091	20108092	chr7:20108092:T:C	rs2110328	T	C	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	20137709	20137710	chr7:20137710:G:A	rs10254700	G	A	A	Sox3.mouse_HMG_3	13	1	-	6.496303588437671	-0.11095702202434932	CATGAATTGCCTTCAAT
chr7	20264663	20264664	chr7:20264664:C:T	rs6976594	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	20270893	20270894	chr7:20270894:C:A	rs1385457063	C	A	C	Sox3.mouse_HMG_3	7	1	-	3.1780414620983644	2.328008519868294	GTTCAATGGTATTCCTG
chr7	20301913	20301914	chr7:20301914:T:C	rs10464297	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr7	20302254	20302255	chr7:20302255:G:C	rs140101270	G	C	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr7	20404097	20404098	chr7:20404098:A:G	rs6972297	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.1947322349853358	-5.4132184065554645	GAACAATTGCATTCACA
chr7	20476131	20476132	chr7:20476132:G:T	rs6461502	G	T	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr7	20596841	20596842	chr7:20596842:A:G	rs17143143	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr7	20596855	20596856	chr7:20596856:T:C	rs1858941	T	C	T	Sox3.mouse_HMG_3	6	1	+	3.639775342860947	-2.968175298679852	AAAGAATTTAAGTCATA
chr7	20596884	20596885	chr7:20596885:G:A	rs1858942	G	A	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr7	21341351	21341352	chr7:21341352:G:T	rs4294095	G	T	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr7	21365075	21365076	chr7:21365076:C:G	rs183341459	C	G	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr7	21532765	21532766	chr7:21532766:C:A	rs113226321	C	A	C	Sox3.mouse_HMG_3	7	1	-	3.6219049778730277	2.7718720356429563	AATAAAGGGTATTCAAA
chr7	21656393	21656394	chr7:21656394:T:A	rs13244343	T	A	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr7	21708011	21708012	chr7:21708012:A:G	rs2074759	A	G	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr7	21718604	21718605	chr7:21718605:A:G	rs2965412	A	G	A	Sox3.mouse_HMG_3	15	1	-	6.499373791387997	1.784980379672929	TGTGAATTATTTTCATT
chr7	21718620	21718621	chr7:21718621:A:G	rs73682683	A	G	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr7	21768417	21768418	chr7:21768418:G:A	rs10268330	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr7	22127869	22127870	chr7:22127870:C:T	rs3807541	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	22365514	22365515	chr7:22365515:C:T	rs111657713	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	22377685	22377686	chr7:22377686:G:A	rs9648285	G	A	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr7	22430363	22430364	chr7:22430364:T:C	rs79801346	T	C	T	Sox3.mouse_HMG_3	1	1	-	3.127923107929316	0.027793171492025315	TATTAGTTCCATTCATT
chr7	22430369	22430370	chr7:22430370:A:T	rs78486986	A	T	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr7	22440145	22440146	chr7:22440146:C:T	rs2528847	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr7	22493366	22493367	chr7:22493367:C:A	rs16881812	C	A	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr7	22493413	22493414	chr7:22493414:C:G	rs148687847	C	G	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	22577424	22577425	chr7:22577425:T:C	rs17366457	T	C	T	Sox3.mouse_HMG_3	1	1	+	1.5077806089630517	0.3009979032962531	ATTGGATTACATACATG
chr7	22589665	22589666	chr7:22589666:C:T	rs2905349	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr7	22669383	22669384	chr7:22669384:C:A	rs2905324	C	A	C	Sox3.mouse_HMG_3	13	1	+	3.2303454410678194	-3.1522912329095574	CATGAACTCCATGCATA
chr7	22716773	22716774	chr7:22716774:C:T	rs140729376	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr7	22720382	22720383	chr7:22720383:C:A	rs13438415	C	A	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr7	22720391	22720392	chr7:22720392:C:G	rs73683966	C	G	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	22781399	22781400	chr7:22781400:C:T	rs13243243	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr7	22886491	22886492	chr7:22886492:A:C	rs143478954	A	C	A	Sox3.mouse_HMG_3	4	1	+	5.064769926184555	-1.685771581934831	GATAAATTGTAGACATA
chr7	22912223	22912224	chr7:22912224:G:A	rs4719720	G	A	a	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr7	22912259	22912260	chr7:22912260:C:T	rs28425746	C	T	c	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	23076239	23076240	chr7:23076240:A:G	rs12539467	A	G	A	Sox3.mouse_HMG_3	1	1	+	3.143892641699376	0.04376270526208481	AATGAATTCCAGCAATG
chr7	23313690	23313691	chr7:23313691:T:G	rs156419	T	G	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr7	23396807	23396808	chr7:23396808:G:A	rs12700428	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr7	23471701	23471702	chr7:23471702:G:A	rs1001912682	G	A	G	Sox3.mouse_HMG_3	13	1	-	-0.44010533413420805	-7.047365944596226	TATGTATGGCTCTCATG
chr7	23514993	23514994	chr7:23514994:A:G	rs1542608	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr7	23981712	23981713	chr7:23981713:C:T	rs929947	C	T	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	24235133	24235134	chr7:24235134:A:C	rs12666025	A	C	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr7	24422700	24422701	chr7:24422701:G:A	rs1858957	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr7	24422937	24422938	chr7:24422938:C:T	rs6461804	C	T	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	24428919	24428920	chr7:24428920:T:C	rs12533743	T	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr7	24575653	24575654	chr7:24575654:A:G	rs80279245	A	G	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	24858234	24858235	chr7:24858235:G:A	rs6955303	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr7	24927135	24927136	chr7:24927136:C:A	rs115	C	A	C	Sox3.mouse_HMG_3	11	1	-	3.081796644826899	4.516232745122706	AATGAGTTCCAGACATA
chr7	24927159	24927160	chr7:24927160:G:A	rs73276222	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr7	24971032	24971033	chr7:24971033:C:T	rs150	C	T	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	24971831	24971832	chr7:24971832:T:C	rs537108862	T	C	T	Sox3.mouse_HMG_3	8	1	+	4.9128600483893425	5.174979793305448	TATCACTGTTATTCATA
chr7	25116604	25116605	chr7:25116605:G:A	rs11489282	G	A	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr7	25245259	25245260	chr7:25245260:T:C	rs2717874	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	25325780	25325781	chr7:25325781:A:G	rs10281820	A	G	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr7	25391429	25391430	chr7:25391430:A:G	rs148429484	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.5232586739485867	-3.1911347377664816	TCAGAATGGTAGACATA
chr7	25391440	25391441	chr7:25391441:T:C	rs530603602	T	C	T	Sox3.mouse_HMG_3	4	1	-	1.5232586739485867	-4.859558054045482	TCAGAATGGTAGACATA
chr7	25670789	25670790	chr7:25670790:T:C	rs4719821	T	C	C	Sox3.mouse_HMG_3	10	1	-	1.485050319031756	-5.12290032250904	GGTGCCTTCCATTCATA
chr7	25778081	25778082	chr7:25778082:C:T	rs75792884	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr7	25983469	25983470	chr7:25983470:A:G	rs6947773	A	G	g	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr7	26008454	26008455	chr7:26008455:G:A	rs17153037	G	A	G	Sox3.mouse_HMG_3	3	1	+	0.012852686661008805	-5.768712200868222	CATGAAGGTCAGGCAAG
chr7	26009859	26009860	chr7:26009860:G:A	rs6968895	G	A	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr7	26216328	26216329	chr7:26216329:A:G	rs11983671	A	G	A	Sox3.mouse_HMG_3	15	1	-	1.4623831354270636	-3.2520102762880048	CATGATTTCCTGTCATG
chr7	26599216	26599217	chr7:26599217:G:T	rs4722618	G	T	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr7	26632166	26632167	chr7:26632167:C:G	rs6944239	C	G	G	Sox3.mouse_HMG_3	3	1	-	2.003744823065362	-4.745745912639688	CATGGATGTCATCCAAG
chr7	26978250	26978251	chr7:26978251:G:A	rs774253	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr7	27134907	27134908	chr7:27134908:T:A	rs117874630	T	A	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	27165660	27165661	chr7:27165661:C:G	rs188239370	C	G	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr7	27165662	27165663	chr7:27165663:A:G	rs3801776	A	G	G	Sox3.mouse_HMG_3	1	1	+	3.736627667491848	0.6364977310545554	GATGTTTTGCAGTCATA
chr7	27197338	27197339	chr7:27197339:C:T	rs757181	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	27552727	27552728	chr7:27552728:C:T	rs759269	C	T	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr7	27577484	27577485	chr7:27577485:T:A	rs17155501	T	A	T	Sox3.mouse_HMG_3	14	1	-	4.082539434019648	-2.299406732407262	AAAGATTTGTATTCATT
chr7	27611444	27611445	chr7:27611445:G:T	rs6946582	G	T	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr7	27616230	27616231	chr7:27616231:T:C	rs7788376	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr7	27641575	27641576	chr7:27641576:A:G	rs6946305	A	G	G	Sox3.mouse_HMG_3	2	1	-	7.059014091588464	0.45313497335753616	AATGAATTTCATTCTAT
chr7	27901372	27901373	chr7:27901373:C:T	chr7:27901373:C:T	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr7	28083357	28083358	chr7:28083358:C:A	rs10951191	C	A	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr7	28165683	28165684	chr7:28165684:T:C	rs552707	T	C	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr7	28191846	28191847	chr7:28191847:T:G	rs66729157	T	G	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr7	28298460	28298461	chr7:28298461:T:C	rs2175738	T	C	T	Sox3.mouse_HMG_3	10	1	-	7.387165202775094	0.7792145612342958	TTTGAATGGCATTCTAG
chr7	28395909	28395910	chr7:28395910:A:G	rs76459238	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.0295203334455012	-5.578430308095296	AGGGAATGGCATGCATT
chr7	28424138	28424139	chr7:28424139:C:T	rs174021	C	T	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr7	28482693	28482694	chr7:28482694:T:A	rs217518	T	A	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr7	28625612	28625613	chr7:28625613:A:G	rs36114730	A	G	A	Sox3.mouse_HMG_3	12	1	+	2.5129854441660036	2.2447214575713237	GCTGAATTCCATACAGC
chr7	28625628	28625629	chr7:28625629:C:T	rs12667066	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	28625629	28625630	chr7:28625630:G:A	rs528317120	G	A	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr7	28639842	28639843	chr7:28639843:A:G	rs41315	A	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	28639846	28639847	chr7:28639847:C:T	rs186788692	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr7	28805412	28805413	chr7:28805413:T:C	rs2282911	T	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	28865729	28865730	chr7:28865730:G:C	rs73294985	G	C	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	28932689	28932690	chr7:28932690:A:G	rs10233884	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr7	28953725	28953726	chr7:28953726:C:A	rs137864032	C	A	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr7	28977994	28977995	chr7:28977995:C:T	rs77344596	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr7	28983780	28983781	chr7:28983781:C:T	rs1499229	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	29332114	29332115	chr7:29332115:C:T	rs39130	C	T	c	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr7	29349679	29349680	chr7:29349680:G:A	rs990376	G	A	A	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr7	29489232	29489233	chr7:29489233:C:T	rs77641648	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr7	29494528	29494529	chr7:29494529:G:T	rs73684715	G	T	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr7	29606588	29606589	chr7:29606589:C:T	rs823367	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr7	29606624	29606625	chr7:29606625:C:T	rs75098184	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr7	29622762	29622763	chr7:29622763:C:T	rs569743582	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	29654613	29654614	chr7:29654614:C:T	rs1728550	C	T	t	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr7	29654619	29654620	chr7:29654620:A:T	rs10272065	A	T	a	Sox3.mouse_HMG_3	5	1	+	2.3825150125670858	-4.224925651911627	GATGAATGCTAGAGAAA
chr7	30140792	30140793	chr7:30140793:A:G	rs10260668	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr7	30173057	30173058	chr7:30173058:T:A	rs11762739	T	A	T	Sox3.mouse_HMG_3	11	1	-	3.41330314930341	9.497913975405357	AATGAATTTGAATCATC
chr7	30173074	30173075	chr7:30173075:G:T	rs116418160	G	T	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr7	30247745	30247746	chr7:30247746:G:C	rs881552	G	C	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr7	30479413	30479414	chr7:30479414:C:T	rs2736726	C	T	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr7	30750615	30750616	chr7:30750616:T:C	rs6959671	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr7	30831767	30831768	chr7:30831768:A:T	rs74432030	A	T	A	Sox3.mouse_HMG_3	12	1	-	2.1634375289393866	-3.949373330787844	GGGGAATGATGTTCATA
chr7	30928238	30928239	chr7:30928239:T:A	rs55834230	T	A	T	Sox3.mouse_HMG_3	1	1	-	0.44928039489725813	-2.520796413291836	GATGAATCCTAGTCCAC
chr7	31136791	31136792	chr7:31136792:T:C	rs77912590	T	C	T	Sox3.mouse_HMG_3	5	1	-	2.0593531172913027	-4.429481804779562	TATCAATGGTTTTCAAT
chr7	31342889	31342890	chr7:31342890:A:C	rs2191888	A	C	A	Sox3.mouse_HMG_3	11	1	-	4.029579952291209	2.5951438519954015	AATGAAGTACATCCATG
chr7	31431095	31431096	chr7:31431096:G:A	rs74965413	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr7	31478283	31478284	chr7:31478284:C:T	rs10224657	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr7	31527238	31527239	chr7:31527239:A:C	rs12701109	A	C	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr7	31692539	31692540	chr7:31692540:T:C	rs142761417	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr7	32256997	32256998	chr7:32256998:A:C	rs34930080	A	C	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr7	32470806	32470807	chr7:32470807:T:C	rs77667608	T	C	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr7	32473191	32473192	chr7:32473192:T:C	rs4723159	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	33384546	33384547	chr7:33384547:C:T	rs114073539	C	T	C	Sox3.mouse_HMG_3	0	1	+	6.159578364931232	7.614449010268096	CATGTATTCCAGTCATC
chr7	33392830	33392831	chr7:33392831:T:G	rs79825247	T	G	T	Sox3.mouse_HMG_3	5	1	-	2.1152579427550666	-4.492182721723645	GATAAATTATCTTCAGA
chr7	33580263	33580264	chr7:33580264:A:G	rs896194	A	G	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr7	33669101	33669102	chr7:33669102:G:T	rs77673435	G	T	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	33700563	33700564	chr7:33700564:G:A	rs10269704	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr7	33728705	33728706	chr7:33728706:C:G	rs75009627	C	G	C	Sox3.mouse_HMG_3	8	1	-	2.8016990702092497	2.3589164015313178	TTTAAATTGTATTTATG
chr7	33958139	33958140	chr7:33958140:T:C	rs149590458	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	34090962	34090963	chr7:34090963:A:T	rs10277432	A	T	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr7	34182376	34182377	chr7:34182377:A:G	rs7341527	A	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr7	34573953	34573954	chr7:34573954:A:G	rs17169870	A	G	A	Sox3.mouse_HMG_3	14	1	+	3.032317129700947	-3.3496290367259647	AATAATTTTCAGTCATA
chr7	34660441	34660442	chr7:34660442:A:G	rs11761093	A	G	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr7	34748563	34748564	chr7:34748564:G:C	rs324398	G	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	35025644	35025645	chr7:35025645:T:C	rs329254	T	C	.	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	35047961	35047962	chr7:35047962:G:T	rs35206184	G	T	.	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	35286505	35286506	chr7:35286506:T:C	rs1448726323	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr7	35377839	35377840	chr7:35377840:C:T	rs2052689	C	T	C	Sox3.mouse_HMG_3	9	1	+	0.729444539245334	0.73708121623708	TGAGAATGCCAGTCTTT
chr7	35488230	35488231	chr7:35488231:G:A	rs73087406	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr7	35522259	35522260	chr7:35522260:T:C	rs867177	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.1193761164119318	-5.486503001819	CATAAATGGAAGTCAGA
chr7	35571114	35571115	chr7:35571115:C:T	chr7:35571115:C:T	C	T	C	Sox3.mouse_HMG_3	13	1	+	2.769049788487112	-3.838210821974908	GTTGGATGAGATTCATT
chr7	36048331	36048332	chr7:36048332:C:T	rs57626362	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr7	36077826	36077827	chr7:36077827:G:C	rs12701480	G	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr7	36181987	36181988	chr7:36181988:A:G	rs28712776	A	G	A	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr7	36464460	36464461	chr7:36464461:T:C	rs17170599	T	C	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr7	36590968	36590969	chr7:36590969:G:T	rs2727800	G	T	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr7	36621281	36621282	chr7:36621282:A:G	rs2727821	A	G	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	36777414	36777415	chr7:36777415:T:A	rs181872891	T	A	T	Sox3.mouse_HMG_3	6	1	+	1.9374995308647274	-4.813551954316744	ATTGTGTGCCATTCATG
chr7	36844521	36844522	chr7:36844522:A:G	rs6462716	A	G	G	Sox3.mouse_HMG_3	1	1	+	16.871295804729822	13.771165868292531	TATGAATGTTAGTCATG
chr7	36970568	36970569	chr7:36970569:T:C	rs12537494	T	C	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr7	36970607	36970608	chr7:36970608:T:C	rs149565535	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr7	37112992	37112993	chr7:37112993:A:T	rs59119882	A	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	37112996	37112997	chr7:37112997:C:T	rs75518675	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr7	37117536	37117537	chr7:37117537:T:C	rs78305301	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr7	37210829	37210830	chr7:37210830:G:A	rs6980211	G	A	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	37290776	37290777	chr7:37290777:A:C	rs2723964	A	C	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr7	37297671	37297672	chr7:37297672:C:T	rs6964891	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr7	37297677	37297678	chr7:37297678:G:A	rs6965164	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr7	37330558	37330559	chr7:37330559:A:G	rs2717943	A	G	A	Sox3.mouse_HMG_3	6	1	-	1.4255803715298436	-5.1823702700109555	GATTGATGGCAGTCAGG
chr7	37375684	37375685	chr7:37375685:C:T	rs17136677	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	37375685	37375686	chr7:37375686:G:A	rs17136675	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr7	37410861	37410862	chr7:37410862:A:G	rs79815326	A	G	A	Sox3.mouse_HMG_3	11	1	-	2.936364804028285	-3.1482460220736606	CATGAATTGCATCCTTT
chr7	37443872	37443873	chr7:37443873:T:A	rs11972497	T	A	T	Sox3.mouse_HMG_3	1	1	-	7.732927225930823	4.762850417741729	CATGAAGGCCAGTCATT
chr7	37505168	37505169	chr7:37505169:G:T	rs12113018	G	T	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr7	37510368	37510369	chr7:37510369:G:T	rs12536939	G	T	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr7	38007246	38007247	chr7:38007247:T:C	rs1524050	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr7	38213262	38213263	chr7:38213263:G:A	rs12531618	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr7	38214039	38214040	chr7:38214040:A:G	rs12671662	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	38237855	38237856	chr7:38237856:C:A	rs183718493	C	A	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	38382992	38382993	chr7:38382993:T:G	rs73118105	T	G	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr7	38593050	38593051	chr7:38593051:T:C	rs12701637	T	C	T	Sox3.mouse_HMG_3	11	1	+	1.8280134237460322	-4.256597402355913	AATTAAAGTTATTCAAG
chr7	38751511	38751512	chr7:38751512:T:C	rs7795874	T	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	38908360	38908361	chr7:38908361:C:T	rs6973844	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	38942302	38942303	chr7:38942303:A:G	rs115729418	A	G	A	Sox3.mouse_HMG_3	12	1	+	8.246945205637132	7.978681219042453	AATGAATTATAGACATT
chr7	39182319	39182320	chr7:39182320:G:T	rs62442237	G	T	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr7	39252511	39252512	chr7:39252512:G:T	rs9655034	G	T	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr7	39291785	39291786	chr7:39291786:C:G	rs12701717	C	G	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr7	39602657	39602658	chr7:39602658:C:T	rs111921911	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr7	39609377	39609378	chr7:39609378:G:A	rs4723882	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr7	39622733	39622734	chr7:39622734:T:C	rs73689214	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr7	40136364	40136365	chr7:40136365:G:A	rs115025708	G	A	G	Sox3.mouse_HMG_3	1	1	+	1.2343617624115444	4.3344916988488364	TGTGATTTCCATTCACC
chr7	40356766	40356767	chr7:40356767:C:G	rs71536678	C	G	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr7	40759026	40759027	chr7:40759027:G:T	rs79207887	G	T	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr7	40793353	40793354	chr7:40793354:T:G	rs17439729	T	G	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr7	40800047	40800048	chr7:40800048:C:T	rs10243080	C	T	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr7	40831171	40831172	chr7:40831172:C:T	rs10247275	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr7	40918743	40918744	chr7:40918744:C:A	rs17689310	C	A	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr7	41006878	41006879	chr7:41006879:T:C	rs73083549	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr7	41316325	41316326	chr7:41316326:C:T	rs37296	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	41378341	41378342	chr7:41378342:T:C	rs2330116	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr7	41537454	41537455	chr7:41537455:G:T	rs145846431	G	T	G	Sox3.mouse_HMG_3	13	1	-	8.525906789515126	2.1432701155377503	TATGCATGGTAGTCAAA
chr7	41580280	41580281	chr7:41580281:A:T	rs183176058	A	T	A	Sox3.mouse_HMG_3	12	1	+	2.1168599519610964	8.229670811688326	GTTGAATTCTTTACATA
chr7	41760500	41760501	chr7:41760501:G:A	rs142537935	G	A	G	Sox3.mouse_HMG_3	0	1	+	2.187226264838733	1.3619423636923906	GACCAATTATATTCAAG
chr7	41824485	41824486	chr7:41824486:A:G	rs56337902	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr7	41826797	41826798	chr7:41826798:A:C	rs11763434	A	C	A	Sox3.mouse_HMG_3	6	1	-	2.104953513430807	-4.646097971750665	CATGATTGTTACTCATC
chr7	41880387	41880388	chr7:41880388:A:T	rs560686477	A	T	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr7	41884517	41884518	chr7:41884518:T:A	rs4563778	T	A	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr7	41936545	41936546	chr7:41936546:T:C	rs62441498	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr7	41936562	41936563	chr7:41936563:G:A	rs1056193	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr7	42066076	42066077	chr7:42066077:G:A	rs117132688	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr7	42078423	42078424	chr7:42078424:C:T	rs111993851	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr7	42081985	42081986	chr7:42081986:T:C	rs866417	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.737125373442554	-4.868753744788377	GATGATTTTCTGTCATT
chr7	42151269	42151270	chr7:42151270:T:C	rs34738679	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr7	42181705	42181706	chr7:42181706:G:A	rs3779173	G	A	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr7	42293277	42293278	chr7:42293278:C:T	rs2330440	C	T	C	Sox3.mouse_HMG_3	16	1	-	0.09040438786403482	0.05446393141150918	AAGGATTGCCAGTCAGG
chr7	42399819	42399820	chr7:42399820:C:G	rs2195892	C	G	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	42399845	42399846	chr7:42399846:T:A	rs2195891	T	A	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr7	42574619	42574620	chr7:42574620:C:T	rs1524594	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	42574647	42574648	chr7:42574648:T:G	rs192673816	T	G	T	Sox3.mouse_HMG_3	0	1	-	3.996366802189479	3.0978592041992044	AGTGACTGGTATTCACA
chr7	42726296	42726297	chr7:42726297:A:G	rs76138919	A	G	A	Sox3.mouse_HMG_3	10	1	+	1.5771878660903285	-5.0307627754504685	AATGCATTACATTCCAG
chr7	42726310	42726311	chr7:42726311:C:T	rs1209725990	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr7	43175242	43175243	chr7:43175243:G:A	rs9655043	G	A	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr7	43237839	43237840	chr7:43237840:G:A	rs111882544	G	A	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr7	43393492	43393493	chr7:43393493:C:G	rs79427113	C	G	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr7	43493392	43493393	chr7:43493393:A:G	rs79096823	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr7	43520554	43520555	chr7:43520555:A:C	rs6463197	A	C	C	Sox3.mouse_HMG_3	10	1	+	0.9894401997063356	-5.7616112854751345	TGTGTAGTTCATTCATG
chr7	43585834	43585835	chr7:43585835:G:A	chr7:43585835:G:A	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr7	44270628	44270629	chr7:44270629:C:T	rs10226804	C	T	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr7	44312751	44312752	chr7:44312752:A:C	rs6966275	A	C	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr7	44368457	44368458	chr7:44368458:C:T	rs114846832	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr7	44637498	44637499	chr7:44637499:C:T	rs2268310	C	T	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr7	44640324	44640325	chr7:44640325:C:T	rs114597574	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr7	44759747	44759748	chr7:44759748:T:C	rs73109470	T	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr7	44774572	44774573	chr7:44774573:G:A	rs13231886	G	A	G	Sox3.mouse_HMG_3	3	1	+	0.9519844003864999	-4.829580487142733	GATGTAATACAGTCATC
chr7	44796029	44796030	chr7:44796030:T:C	rs946497791	T	C	T	Sox3.mouse_HMG_3	4	1	-	2.3511118083455607	-4.031704919648508	TATGAAATGCTTTCAAA
chr7	44801264	44801265	chr7:44801265:G:A	rs10249442	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr7	45007231	45007232	chr7:45007232:C:A	rs1476618	C	A	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr7	45054234	45054235	chr7:45054235:A:G	rs1898961	A	G	A	Sox3.mouse_HMG_3	1	1	+	2.1773996784253846	-0.9227302580119086	TATGTGTTATATTCAAG
chr7	45263186	45263187	chr7:45263187:T:C	rs12672306	T	C	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr7	45436004	45436005	chr7:45436005:A:G	rs73694093	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr7	45445316	45445317	chr7:45445317:T:A	rs146209848	T	A	T	Sox3.mouse_HMG_3	4	1	-	1.0709136215849768	-5.536527042893733	CCTGAATTACATACACG
chr7	45581775	45581776	chr7:45581776:T:C	rs6957861	T	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr7	45596231	45596232	chr7:45596232:C:T	rs142962261	C	T	C	Sox3.mouse_HMG_3	9	1	+	7.571490993100001	7.579127670091747	TTTTAATTTCATTCATG
chr7	45683330	45683331	chr7:45683331:A:G	rs7778387	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr7	45695430	45695431	chr7:45695431:C:G	rs919571797	C	G	C	Sox3.mouse_HMG_3	8	1	-	4.604731920770904	4.161949252092972	CATGCATGGCATCCATG
chr7	45953439	45953440	chr7:45953440:C:A	rs2462327	C	A	C	Sox3.mouse_HMG_3	0	1	-	3.368713334355819	3.099792480556065	GATGAATAATAGACATT
chr7	46059644	46059645	chr7:46059645:G:A	rs35984236	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	46098873	46098874	chr7:46098874:A:C	rs13246216	A	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr7	46145595	46145596	chr7:46145596:A:G	rs144223310	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr7	46321364	46321365	chr7:46321365:T:G	rs12536255	T	G	t	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr7	46432764	46432765	chr7:46432765:C:T	rs12537559	C	T	C	Sox3.mouse_HMG_3	11	1	-	3.8800721624821426	-0.7701025633239957	AATGAAAGGCAGGCATG
chr7	46595095	46595096	chr7:46595096:T:A	rs142713141	T	A	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr7	46604191	46604192	chr7:46604192:A:T	rs138891943	A	T	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr7	46606764	46606765	chr7:46606765:C:T	rs983189330	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr7	46654754	46654755	chr7:46654755:G:A	rs113275110	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr7	46764857	46764858	chr7:46764858:A:G	rs6944447	A	G	G	Sox3.mouse_HMG_3	11	1	-	4.465205851460025	-1.6194049746419195	AATGAAAGACATTTATG
chr7	46773171	46773172	chr7:46773172:T:C	rs10244537	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr7	47049741	47049742	chr7:47049742:T:C	rs6945274	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	47236268	47236269	chr7:47236269:C:T	rs2728461	C	T	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	47313188	47313189	chr7:47313189:G:A	rs62446267	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	47370481	47370482	chr7:47370482:G:A	rs116992534	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr7	47409042	47409043	chr7:47409043:A:C	rs865031	A	C	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr7	47442458	47442459	chr7:47442459:G:A	rs1623328	G	A	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	47454865	47454866	chr7:47454866:C:G	rs73095128	C	G	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr7	47551088	47551089	chr7:47551089:G:A	rs144027430	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr7	47693463	47693464	chr7:47693464:T:C	rs4720611	T	C	C	Sox3.mouse_HMG_3	11	1	+	10.98548465650461	4.9008738304026656	CTTGAATTCCATTCAAA
chr7	47693471	47693472	chr7:47693472:C:T	rs4720612	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	47714672	47714673	chr7:47714673:G:A	rs117255278	G	A	G	Sox3.mouse_HMG_3	13	1	-	1.2368998624446568	-5.370360748017363	GCAGAATGGTACTCATC
chr7	47766478	47766479	chr7:47766479:T:C	rs10276437	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr7	47835965	47835966	chr7:47835966:C:T	rs4543454	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	47843450	47843451	chr7:47843451:C:T	rs73331759	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr7	47843763	47843764	chr7:47843764:T:C	rs9639016	T	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr7	47889590	47889591	chr7:47889591:C:A	rs10268695	C	A	C	Sox3.mouse_HMG_3	13	1	+	1.998260140567618	-4.384376533409758	CCTGAATTCCAGTCCAG
chr7	47956680	47956681	chr7:47956681:G:A	rs79969910	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr7	48096240	48096241	chr7:48096241:A:G	rs75399009	A	G	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	48112553	48112554	chr7:48112554:G:T	rs530041701	G	T	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr7	48352044	48352045	chr7:48352045:G:C	rs4145714	G	C	g	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr7	48392474	48392475	chr7:48392475:C:T	rs6946995	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr7	48431836	48431837	chr7:48431837:C:T	rs7357104	C	T	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr7	48565382	48565383	chr7:48565383:T:G	rs4917163	T	G	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr7	48565413	48565414	chr7:48565414:G:T	rs6944801	G	T	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	48703599	48703600	chr7:48703600:A:G	rs73098424	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr7	49015008	49015009	chr7:49015009:A:T	rs28831089	A	T	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr7	49044987	49044988	chr7:49044988:G:A	rs4598208	G	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr7	49626779	49626780	chr7:49626780:C:A	rs73694923	C	A	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	49849244	49849245	chr7:49849245:T:C	rs691084	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	49891037	49891038	chr7:49891038:A:G	rs623107	A	G	A	Sox3.mouse_HMG_3	16	1	-	3.871079462339317	3.004152722867038	ATTGATTTTTATTCAAT
chr7	50143026	50143027	chr7:50143027:A:T	rs13231420	A	T	A	Sox3.mouse_HMG_3	5	1	+	4.225843768410826	-2.381596896067885	CTTGAATTTTTTTCATC
chr7	50148686	50148687	chr7:50148687:A:G	rs3891340	A	G	A	Sox3.mouse_HMG_3	16	1	-	1.6848487737395414	0.8179220342672626	GCTGAATTCTAGGCAGT
chr7	50197486	50197487	chr7:50197487:T:C	rs6957965	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr7	50371499	50371500	chr7:50371500:G:A	rs78451034	G	A	G	Sox3.mouse_HMG_3	12	1	+	1.3866697776571544	1.6549337642518342	CTTGAATGGGAGGCATA
chr7	50473044	50473045	chr7:50473045:T:C	rs7803247	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr7	50536130	50536131	chr7:50536131:A:G	rs10239830	A	G	A	Sox3.mouse_HMG_3	12	1	+	1.191972135499585	0.923708148904905	GATGAAGGACAGACAGA
chr7	50577674	50577675	chr7:50577675:G:A	rs11489736	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	50583541	50583542	chr7:50583542:T:C	rs66792686	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr7	50610941	50610942	chr7:50610942:A:G	rs80020793	A	G	A	Sox3.mouse_HMG_3	11	1	-	3.7663063511023545	-2.3183044749995916	TATGAATTCTATTACTT
chr7	50610942	50610943	chr7:50610943:T:C	rs114914176	T	C	T	Sox3.mouse_HMG_3	10	1	-	3.7663063511023545	-2.8416442904384445	TATGAATTCTATTACTT
chr7	50674847	50674848	chr7:50674848:C:T	rs2214964	C	T	T	Sox3.mouse_HMG_3	11	1	-	5.689731712340511	1.039556986534374	CTGGAATGTCAGTCATG
chr7	50731255	50731256	chr7:50731256:C:T	rs28599932	C	T	T	Sox3.mouse_HMG_3	6	1	+	5.428434006852842	12.03638464839364	AATGAACGGTATTCCTA
chr7	50803610	50803611	chr7:50803611:T:C	rs79830371	T	C	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr7	50806321	50806322	chr7:50806322:C:T	rs7802338	C	T	c	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr7	50806336	50806337	chr7:50806337:C:T	rs148853173	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	50870746	50870747	chr7:50870747:G:A	rs10480959	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	50898702	50898703	chr7:50898703:T:A	rs2329559	T	A	a	Sox3.mouse_HMG_3	7	1	+	1.0789147358881832	-4.624601036539474	CACCAATTGCATTCAAG
chr7	51014777	51014778	chr7:51014778:T:C	rs6956095	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr7	51115732	51115733	chr7:51115733:A:G	rs1370402	A	G	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr7	51290295	51290296	chr7:51290296:T:A	rs77726646	T	A	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr7	51307807	51307808	chr7:51307808:A:G	rs35265128	A	G	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr7	51439860	51439861	chr7:51439861:C:T	rs28778375	C	T	c	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr7	51444980	51444981	chr7:51444981:T:C	rs1317141	T	C	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	51517316	51517317	chr7:51517317:A:G	rs4498493	A	G	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr7	51862326	51862327	chr7:51862327:C:T	rs670754	C	T	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr7	51904920	51904921	chr7:51904921:A:G	rs7796595	A	G	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr7	51994147	51994148	chr7:51994148:T:C	rs6977657	T	C	t	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	52252170	52252171	chr7:52252171:T:C	rs2464951	T	C	T	Sox3.mouse_HMG_3	2	1	+	5.52538275908657	-1.0804963591443604	TATAAATTTTATACATA
chr7	52322176	52322177	chr7:52322177:G:A	rs73117940	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.5829455244066868	-4.198619363122545	AGAGAATTCTTTTCATG
chr7	52352682	52352683	chr7:52352683:A:G	rs296298	A	G	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr7	52550256	52550257	chr7:52550257:A:G	rs17135137	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr7	52708849	52708850	chr7:52708850:T:C	rs1649715	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	52742229	52742230	chr7:52742230:G:A	rs1230524	G	A	G	Sox3.mouse_HMG_3	3	1	+	3.8050568738746238	-1.9765080136546072	AATGCATTACATTCCTA
chr7	52742241	52742242	chr7:52742242:T:C	rs12234864	T	C	C	Sox3.mouse_HMG_3	15	1	+	3.8050568738746238	-0.9093365378404443	AATGCATTACATTCCTA
chr7	52963023	52963024	chr7:52963024:A:G	rs75090715	A	G	A	Sox3.mouse_HMG_3	11	1	+	1.7819593503773599	6.432134076183497	AATGTATTGCAATCAGG
chr7	53001047	53001048	chr7:53001048:T:C	rs62454486	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr7	53324682	53324683	chr7:53324683:A:T	rs71544160	A	T	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr7	53381529	53381530	chr7:53381530:C:T	rs4947801	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	54759705	54759706	chr7:54759706:T:C	rs118082693	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr7	54789015	54789016	chr7:54789016:C:G	rs145200002	C	G	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr7	54789017	54789018	chr7:54789018:G:A	rs1997375	G	A	A	Sox3.mouse_HMG_3	0	1	+	1.4793973746386808	0.6541134734923344	GTTCACTTATATTCATG
chr7	54969203	54969204	chr7:54969204:C:G	rs1005176	C	G	G	Sox3.mouse_HMG_3	1	1	-	0.6084011021841982	-0.468328475234405	AGTGACTCCCAGTCATG
chr7	54969480	54969481	chr7:54969481:T:C	rs187215881	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	55056274	55056275	chr7:55056275:C:T	rs11773818	C	T	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr7	55111515	55111516	chr7:55111516:G:T	rs759158	G	T	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr7	55185555	55185556	chr7:55185556:C:T	rs116606194	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr7	55395823	55395824	chr7:55395824:A:G	rs9649858	A	G	a	Sox3.mouse_HMG_3	14	1	+	5.813082655810447	-0.568863510616463	CGAGAATTACAGTCATG
chr7	55413695	55413696	chr7:55413696:T:C	rs1568824	T	C	C	Sox3.mouse_HMG_3	15	1	-	5.001089657895018	4.142308311038597	TCTGAATGGTATTCTAT
chr7	55517431	55517432	chr7:55517432:G:A	rs12056276	G	A	G	Sox3.mouse_HMG_3	11	1	+	1.1644042434959139	-3.4857704823102242	AATGAAGTGCAGCCATC
chr7	55798603	55798604	chr7:55798604:G:A	rs113597534	G	A	.	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr7	56090346	56090347	chr7:56090347:T:C	rs11771788	T	C	C	Sox3.mouse_HMG_3	10	1	-	0.5079272416247937	-6.100023399916004	GATCATTTGCAGTCAGG
chr7	56831976	56831977	chr7:56831977:G:C	rs4960526	G	C	G	Sox3.mouse_HMG_3	3	1	+	0.012687959507638125	-6.736802776197411	CTGGAATGGCAGTCTTG
chr7	62350272	62350273	chr7:62350273:T:C	rs79542864	T	C	.	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr7	62404903	62404904	chr7:62404904:G:C	rs892376677	G	C	N	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	63066470	63066471	chr7:63066471:A:G	rs34135206	A	G	A	Sox3.mouse_HMG_3	10	1	+	1.0402837318970826	-5.567666909643715	TCTGAAATGCAGTCACA
chr7	63449252	63449253	chr7:63449253:C:G	rs549072102	C	G	.	Sox3.mouse_HMG_3	12	1	-	0.021195956604385113	0.2094172355255286	CTGGAATGGTAGGCATG
chr7	64045166	64045167	chr7:64045167:C:G	rs11979814	C	G	.	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr7	64240632	64240633	chr7:64240633:A:G	rs11978020	A	G	-	Sox3.mouse_HMG_3	15	1	-	0.9860278470858663	-3.728365564629202	TCTGGATTGCATTTATG
chr7	64459876	64459877	chr7:64459877:C:T	rs11772218	C	T	c	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr7	64871619	64871620	chr7:64871620:G:A	rs62455061	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	64903774	64903775	chr7:64903775:T:C	rs10232081	T	C	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr7	65233862	65233863	chr7:65233863:T:A	rs7796077	T	A	a	Sox3.mouse_HMG_3	2	1	+	1.4364661028318262	-4.290862611507797	AATAAATGCCAGCCAGA
chr7	65233882	65233883	chr7:65233883:C:T	rs117242656	C	T	c	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr7	65441002	65441003	chr7:65441003:T:C	rs17784082	T	C	t	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	65504402	65504403	chr7:65504403:C:T	rs56651260	C	T	.	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr7	65562707	65562708	chr7:65562708:T:C	rs1431360439	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr7	66255896	66255897	chr7:66255897:A:G	rs12537823	A	G	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr7	66307770	66307771	chr7:66307771:T:C	rs4718333	T	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr7	66307806	66307807	chr7:66307807:C:T	rs144288104	C	T	c	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	66534028	66534029	chr7:66534029:A:G	rs62465429	A	G	a	Sox3.mouse_HMG_3	6	1	-	1.728453655566405	-4.879496985974392	TGTTAATTGCATTCTTA
chr7	66742519	66742520	chr7:66742520:A:C	rs560900824	A	C	a	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr7	67329873	67329874	chr7:67329874:A:C	rs10237064	A	C	.	Sox3.mouse_HMG_3	7	1	-	1.2360802328668326	2.0861131750969033	GATGAAATTCATTTAGG
chr7	67753584	67753585	chr7:67753585:C:T	rs2864459	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr7	68159041	68159042	chr7:68159042:C:T	rs75517856	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr7	68306813	68306814	chr7:68306814:G:C	rs1524869	G	C	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	68349743	68349744	chr7:68349744:T:A	rs7794971	T	A	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr7	68425723	68425724	chr7:68425724:C:T	rs12540145	C	T	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr7	68487491	68487492	chr7:68487492:T:C	rs903526	T	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	69342518	69342519	chr7:69342519:T:C	rs73147806	T	C	T	Sox3.mouse_HMG_3	16	1	-	2.0268169680519437	2.0627574245044693	TGTGATTTGCATTAATA
chr7	69430913	69430914	chr7:69430914:T:G	rs185779717	T	G	T	Sox3.mouse_HMG_3	14	1	-	1.2975917842793632	-5.084354382147548	TGTGAAGTACATGCATG
chr7	69537499	69537500	chr7:69537500:G:A	rs376325500	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr7	69644279	69644280	chr7:69644280:A:G	rs2533440	A	G	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr7	69657071	69657072	chr7:69657072:T:C	rs548842691	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr7	69793993	69793994	chr7:69793994:A:C	rs10229588	A	C	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	70037329	70037330	chr7:70037330:A:G	rs6961682	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr7	70099514	70099515	chr7:70099515:C:T	rs78613045	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr7	70567290	70567291	chr7:70567291:A:G	rs4718962	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr7	71159633	71159634	chr7:71159634:C:T	rs728136	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr7	71349612	71349613	chr7:71349613:A:G	rs1922513	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr7	71521746	71521747	chr7:71521747:A:G	rs147560620	A	G	A	Sox3.mouse_HMG_3	9	1	-	1.0576069854345613	1.0499703084428154	GATTGATGATATTCAGT
chr7	71521758	71521759	chr7:71521759:G:A	rs56670487	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr7	71984483	71984484	chr7:71984484:C:G	rs844699	C	G	G	Sox3.mouse_HMG_3	13	1	+	5.21528931759357	-1.3919712928684491	GAAGAATTTGAGTCATG
chr7	73652625	73652626	chr7:73652626:C:T	rs6974571	C	T	C	Sox3.mouse_HMG_3	7	1	-	5.099990567017285	-1.4535581476404433	GGTAAATGTTAGTCAGA
chr7	73652626	73652627	chr7:73652627:A:G	rs6974424	A	G	G	Sox3.mouse_HMG_3	6	1	-	5.099990567017285	-1.5079600745235127	GGTAAATGTTAGTCAGA
chr7	73851086	73851087	chr7:73851087:A:G	rs4717112	A	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	73979402	73979403	chr7:73979403:A:G	rs190834488	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr7	74299022	74299023	chr7:74299023:C:T	rs141564109	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr7	74578673	74578674	chr7:74578674:C:A	rs184499734	C	A	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr7	74584571	74584572	chr7:74584572:A:G	rs145386676	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	74656337	74656338	chr7:74656338:G:C	rs193022232	G	C	G	Sox3.mouse_HMG_3	7	1	+	2.4267108312583137	-3.8267332909490763	AATGAATGACTTTCGAG
chr7	75547001	75547002	chr7:75547002:T:C	rs1167801	T	C	T	Sox3.mouse_HMG_3	6	1	-	0.4887972002107721	0.4887972002107721	CATGCAAGCTATTCAGG
chr7	76113115	76113116	chr7:76113116:C:T	rs2158869	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	76202221	76202222	chr7:76202222:C:T	rs186918872	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	76346521	76346522	chr7:76346522:A:G	rs61536380	A	G	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr7	77201247	77201248	chr7:77201248:C:T	rs191952530	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr7	77427792	77427793	chr7:77427793:T:C	rs7778041	T	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr7	77427819	77427820	chr7:77427820:A:G	rs183695412	A	G	A	Sox3.mouse_HMG_3	2	1	-	4.156300356655747	-2.449578761575184	TCTGAATGGCAGACAGG
chr7	77566177	77566178	chr7:77566178:A:G	rs7788619	A	G	G	Sox3.mouse_HMG_3	14	1	+	0.7523308615624384	-5.629615304864473	GGTTACTGCTAGTCATA
chr7	78110850	78110851	chr7:78110851:G:A	rs3823793	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr7	78139538	78139539	chr7:78139539:A:C	rs542342188	A	C	A	Sox3.mouse_HMG_3	5	1	+	12.008014830112455	5.400574165633742	GATGAATGGTACTCATT
chr7	78372536	78372537	chr7:78372537:G:A	rs66733412	G	A	G	Sox3.mouse_HMG_3	13	1	-	2.674544912578119	-3.932715697883901	CATGTATGTTATTCTTT
chr7	78449292	78449293	chr7:78449293:A:C	rs990527	A	C	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr7	78472337	78472338	chr7:78472338:A:G	rs113916245	A	G	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr7	78587458	78587459	chr7:78587459:A:T	rs6968443	A	T	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr7	78635624	78635625	chr7:78635625:C:T	rs79598146	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr7	78677614	78677615	chr7:78677615:C:A	rs73380234	C	A	C	Sox3.mouse_HMG_3	11	1	-	1.638204930456727	3.072641030752534	TGCAAATGCCAGTCATG
chr7	78692295	78692296	chr7:78692296:A:G	rs7785088	A	G	A	Sox3.mouse_HMG_3	4	1	+	7.634210690502636	1.2513939625085682	ACTGAATGGTATTTATA
chr7	78722716	78722717	chr7:78722717:G:A	rs7805425	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr7	78852863	78852864	chr7:78852864:G:T	rs491394	G	T	G	Sox3.mouse_HMG_3	15	1	+	2.440634765434549	5.56322557652779	TTTGGATTATAGTCAGT
chr7	78899505	78899506	chr7:78899506:T:G	rs17469166	T	G	T	Sox3.mouse_HMG_3	12	1	-	5.668048848580507	5.588006140906971	TATGAAGGCTATACATA
chr7	79338355	79338356	chr7:79338356:G:T	rs562191221	G	T	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr7	79452209	79452210	chr7:79452210:G:C	rs12154329	G	C	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr7	79665263	79665264	chr7:79665264:A:G	rs6949332	A	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	79665279	79665280	chr7:79665280:G:C	rs6966691	G	C	G	Sox3.mouse_HMG_3	5	1	+	3.384186598745034	3.2655808563371864	AATGAGTGCTACTCATC
chr7	79691230	79691231	chr7:79691231:G:T	rs10499845	G	T	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr7	80151670	80151671	chr7:80151671:G:A	rs550453332	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	80189640	80189641	chr7:80189641:A:G	rs28435776	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr7	80410378	80410379	chr7:80410379:A:G	rs17153841	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr7	80455072	80455073	chr7:80455073:A:G	rs799977	A	G	G	Sox3.mouse_HMG_3	11	1	-	15.704102004914049	9.619491178812105	AATGAATGCCATTCAAA
chr7	80668856	80668857	chr7:80668857:C:T	rs3211931	C	T	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr7	80673073	80673074	chr7:80673074:C:T	rs3211952	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr7	80724912	80724913	chr7:80724913:G:A	rs1880957	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	80763899	80763900	chr7:80763900:T:C	rs3823478	T	C	T	Sox3.mouse_HMG_3	5	1	-	3.9244950864168784	-2.5643398356539837	CGTCAATGATATTCAGA
chr7	80774207	80774208	chr7:80774208:A:G	rs72612620	A	G	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr7	80774237	80774238	chr7:80774238:T:G	rs73137708	T	G	T	Sox3.mouse_HMG_3	4	1	-	7.038894647017952	0.2883531388985675	TCTGAATGGTGTTCATT
chr7	80827160	80827161	chr7:80827161:G:T	rs67118064	G	T	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr7	81121457	81121458	chr7:81121458:G:C	rs6467574	G	C	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr7	81129922	81129923	chr7:81129923:A:G	rs3847121	A	G	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	81138945	81138946	chr7:81138946:G:A	rs3914075	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr7	81151835	81151836	chr7:81151836:G:A	rs58500032	G	A	G	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr7	81333281	81333282	chr7:81333282:A:C	rs1014079	A	C	A	Sox3.mouse_HMG_3	7	1	-	1.7379609415506527	2.587993883780724	TATGATATCTAGTCATT
chr7	81694543	81694544	chr7:81694544:G:T	rs2190219	G	T	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr7	82109630	82109631	chr7:82109631:C:T	rs4732423	C	T	T	Sox3.mouse_HMG_3	5	1	+	2.1202637908170248	2.1202637908170248	TTTGACTGTTGTTCATG
chr7	82212287	82212288	chr7:82212288:A:C	rs77007797	A	C	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr7	82288948	82288949	chr7:82288949:G:A	rs116894339	G	A	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr7	82319370	82319371	chr7:82319371:C:G	rs6467891	C	G	c	Sox3.mouse_HMG_3	16	1	+	2.951522077885865	5.005378333563166	TATACATTATATTCATC
chr7	82425194	82425195	chr7:82425195:T:G	rs80247894	T	G	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr7	82470848	82470849	chr7:82470849:C:T	rs6957160	C	T	T	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr7	82578468	82578469	chr7:82578469:G:A	rs2189984	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr7	83159268	83159269	chr7:83159269:C:T	rs34552524	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr7	83207999	83208000	chr7:83208000:A:G	rs12707571	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr7	83326199	83326200	chr7:83326200:T:C	rs73709839	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.372133179829171	-0.7279967566081206	GATGAAATAAAGTCATT
chr7	83361601	83361602	chr7:83361602:C:G	rs17284571	C	G	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr7	84002367	84002368	chr7:84002368:A:G	rs10250543	A	G	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr7	84041064	84041065	chr7:84041065:G:T	rs6965653	G	T	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr7	84091975	84091976	chr7:84091976:A:T	rs6965990	A	T	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	84102335	84102336	chr7:84102336:G:A	rs4732540	G	A	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	84148434	84148435	chr7:84148435:T:C	rs6959163	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	84399319	84399320	chr7:84399320:G:A	rs6948391	G	A	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr7	84612912	84612913	chr7:84612913:T:C	rs115143474	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr7	84640715	84640716	chr7:84640716:G:A	rs11496186	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	84648158	84648159	chr7:84648159:T:C	rs61691105	T	C	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr7	85154736	85154737	chr7:85154737:C:T	rs1019203	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr7	85204783	85204784	chr7:85204784:A:T	rs1473150	A	T	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr7	85224490	85224491	chr7:85224491:T:A	rs36001788	T	A	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr7	85285374	85285375	chr7:85285375:G:A	rs6944323	G	A	G	Sox3.mouse_HMG_3	11	1	+	7.378391340685285	2.7282166148791474	GATAAATTTCAGTCAGG
chr7	85482212	85482213	chr7:85482213:C:T	rs2140461	C	T	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	85591952	85591953	chr7:85591953:T:C	rs12704144	T	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr7	85776020	85776021	chr7:85776021:A:C	rs10273682	A	C	A	Sox3.mouse_HMG_3	1	1	-	8.932051927220378	8.801998798972178	GTTGAATTCTACTCATG
chr7	85908318	85908319	chr7:85908319:A:G	rs1052819341	A	G	A	Sox3.mouse_HMG_3	0	1	-	0.7703015041152013	-0.6845691412216632	TCTGAATTCCATGCCTG
chr7	85940821	85940822	chr7:85940822:C:T	rs11773194	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr7	86184606	86184607	chr7:86184607:C:T	rs6465042	C	T	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	86236900	86236901	chr7:86236901:C:T	rs7458310	C	T	C	Sox3.mouse_HMG_3	9	1	+	3.7241312754109392	3.731767952402685	AGTGAATGTCGTTCAGT
chr7	87002980	87002981	chr7:87002981:G:C	rs1617490	G	C	c	Sox3.mouse_HMG_3	10	1	+	0.1614704049054947	0.018369561264821366	GATGAATGGCGCTCCTA
chr7	87332045	87332046	chr7:87332046:T:C	rs802031	T	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	87552532	87552533	chr7:87552533:G:T	rs3789244	G	T	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr7	87566571	87566572	chr7:87566572:T:C	rs28381848	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr7	88104807	88104808	chr7:88104808:T:C	rs78689128	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr7	88269279	88269280	chr7:88269280:T:C	rs17349864	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.8753652382193353	-0.2247646982179572	CATCAGTGGCAGTCATG
chr7	88345199	88345200	chr7:88345200:G:A	rs4728747	G	A	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr7	88665673	88665674	chr7:88665674:A:G	rs2538915	A	G	G	Sox3.mouse_HMG_3	4	1	-	2.848729256514492	2.7056284128738195	TATATATTATATTCAAA
chr7	88665686	88665687	chr7:88665687:T:C	rs12531232	T	C	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr7	88818806	88818807	chr7:88818807:T:C	rs6968172	T	C	T	Sox3.mouse_HMG_3	15	1	+	2.598190469078368	-2.1162029426367006	TGGGAATGCTAATCATA
chr7	88864709	88864710	chr7:88864710:G:A	rs1358100	G	A	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr7	89023740	89023741	chr7:89023741:C:T	rs116597366	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr7	89202518	89202519	chr7:89202519:A:T	rs60477414	A	T	A	Sox3.mouse_HMG_3	16	1	+	5.280584671684173	4.129595611931677	TATGAATGTTATTTCTA
chr7	89934271	89934272	chr7:89934272:G:A	rs117927146	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	89962746	89962747	chr7:89962747:G:C	rs61291068	G	C	G	Sox3.mouse_HMG_3	8	1	+	9.978934991589618	9.536152322911683	GGTGAATGGCATCCATG
chr7	90018085	90018086	chr7:90018086:G:A	rs740291	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	90216588	90216589	chr7:90216589:G:A	rs11563440	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr7	90455427	90455428	chr7:90455428:A:G	rs6465265	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	90671991	90671992	chr7:90671992:G:A	rs7788547	G	A	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	90777447	90777448	chr7:90777448:A:G	rs111369837	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr7	90852764	90852765	chr7:90852765:G:A	rs3802028	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr7	90857898	90857899	chr7:90857899:C:T	rs73222754	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr7	90973907	90973908	chr7:90973908:C:T	rs11976902	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr7	92025489	92025490	chr7:92025490:G:C	rs76691055	G	C	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr7	92799957	92799958	chr7:92799958:G:A	rs149753505	G	A	G	Sox3.mouse_HMG_3	1	1	+	2.4425744801629854	5.542704416600279	TGTGAATGCTATTTCTA
chr7	92837715	92837716	chr7:92837716:T:G	rs12672969	T	G	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	92988004	92988005	chr7:92988005:T:A	rs7795033	T	A	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr7	93333066	93333067	chr7:93333067:A:T	rs28595783	A	T	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	93508135	93508136	chr7:93508136:A:G	rs9656015	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	93623087	93623088	chr7:93623088:T:C	rs957728	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr7	93737204	93737205	chr7:93737205:A:G	rs13235693	A	G	A	Sox3.mouse_HMG_3	2	1	-	1.0657571419521987	-5.540121976278731	GATGACTGACAGTAAGA
chr7	94030921	94030922	chr7:94030922:T:G	rs9886082	T	G	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr7	94041216	94041217	chr7:94041217:A:G	rs10487243	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.5384771495215492	-4.069473492019248	GATCAATGCCATTAAGA
chr7	94042594	94042595	chr7:94042595:T:C	rs10953106	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr7	94059870	94059871	chr7:94059871:A:C	rs142988029	A	C	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	94059901	94059902	chr7:94059902:C:A	rs7802947	C	A	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr7	94190815	94190816	chr7:94190816:A:C	rs1341374276	A	C	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr7	94368511	94368512	chr7:94368512:C:T	rs78228321	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	94374670	94374671	chr7:94374671:C:T	rs144574541	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr7	94414909	94414910	chr7:94414910:T:C	rs42525	T	C	C	Sox3.mouse_HMG_3	14	1	-	2.4616436667932513	-3.9203024996336593	AATGAATATTAGACATT
chr7	94424881	94424882	chr7:94424882:C:T	rs41317734	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr7	94561775	94561776	chr7:94561776:G:C	rs10499907	G	C	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	94561780	94561781	chr7:94561781:C:T	rs75259633	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr7	94644325	94644326	chr7:94644326:T:C	rs17166406	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr7	94701172	94701173	chr7:94701173:A:G	rs1915990	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr7	94777112	94777113	chr7:94777113:A:G	rs4376436	A	G	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr7	95092544	95092545	chr7:95092545:T:C	rs28602619	T	C	T	Sox3.mouse_HMG_3	10	1	-	3.0457414635792794	-3.562209177961517	TATGTACTTCATTCATT
chr7	95405508	95405509	chr7:95405509:A:T	rs9641164	A	T	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr7	95794871	95794872	chr7:95794872:A:G	rs74854159	A	G	A	Sox3.mouse_HMG_3	15	1	-	6.493408256782087	1.7790148450670187	TCTCAATTTTATTCATA
chr7	95803927	95803928	chr7:95803928:C:T	rs34415911	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr7	95859434	95859435	chr7:95859435:C:T	rs116007013	C	T	C	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr7	95951764	95951765	chr7:95951765:G:A	rs114166052	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr7	96212127	96212128	chr7:96212128:G:A	rs75421365	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	96304181	96304182	chr7:96304182:C:T	rs547247144	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr7	96388254	96388255	chr7:96388255:T:G	rs12670656	T	G	T	Sox3.mouse_HMG_3	0	1	-	2.992356882127388	2.0938492841371126	AATGGATTGCTGTCATA
chr7	96408974	96408975	chr7:96408975:C:T	rs78582447	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr7	96932136	96932137	chr7:96932137:G:T	rs4729322	G	T	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr7	96962355	96962356	chr7:96962356:A:G	rs73232633	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr7	97319152	97319153	chr7:97319153:T:C	rs4506130	T	C	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr7	97466271	97466272	chr7:97466272:A:T	rs759423	A	T	A	Sox3.mouse_HMG_3	6	1	-	2.0433716097607295	-4.70767987542074	TATGAATGCCCTTTAGA
chr7	98083788	98083789	chr7:98083789:C:G	rs7790479	C	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	98110190	98110191	chr7:98110191:T:A	rs17169293	T	A	T	Sox3.mouse_HMG_3	8	1	-	1.8143018252326417	1.732516058816417	GATAAATGATCTTCAGT
chr7	98380601	98380602	chr7:98380602:T:C	rs7787858	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	98630907	98630908	chr7:98630908:A:T	rs55875706	A	T	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr7	98630914	98630915	chr7:98630915:C:G	rs1728987	C	G	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr7	98708871	98708872	chr7:98708872:G:C	rs7790277	G	C	G	Sox3.mouse_HMG_3	2	1	+	1.4702760429526682	1.6133768865933416	TAGGACTTTCAGTCATT
chr7	98802164	98802165	chr7:98802165:T:G	chr7:98802165:T:G	T	G	t	Sox3.mouse_HMG_3	12	1	+	0.03320987781603568	-6.347864968505874	TCTGACTGGCTGTCATG
chr7	98802183	98802184	chr7:98802184:T:G	rs1437548315	T	G	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr7	98802186	98802187	chr7:98802187:A:C	rs4729491	A	C	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	99001016	99001017	chr7:99001017:C:T	rs219829	C	T	T	Sox3.mouse_HMG_3	13	1	+	2.159738166043879	-4.447522444418141	CATGTGTGGTATTCAAA
chr7	99239292	99239293	chr7:99239293:C:T	rs4236542	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr7	99273373	99273374	chr7:99273374:A:G	rs28608208	A	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr7	99368939	99368940	chr7:99368940:G:A	rs73163169	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr7	99623951	99623952	chr7:99623952:A:G	rs559029709	A	G	A	Sox3.mouse_HMG_3	1	1	-	1.0909836499135324	-0.11579905575326777	GTTGAATGGGAGTAATC
chr7	100213196	100213197	chr7:100213197:A:G	rs112084126	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr7	100217623	100217624	chr7:100217624:T:C	rs1727138	T	C	t	Sox3.mouse_HMG_3	2	1	+	3.232889705389419	-3.3729894128415108	TATTTATGGTATTCAAG
chr7	100357740	100357741	chr7:100357741:G:A	rs3087502	G	A	g	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr7	100680308	100680309	chr7:100680309:A:G	rs142574429	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	100932431	100932432	chr7:100932432:C:T	rs78413681	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	100932473	100932474	chr7:100932474:A:C	rs76227289	A	C	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr7	100932474	100932475	chr7:100932475:A:C	rs73163712	A	C	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	101031846	101031847	chr7:101031847:G:A	rs76440115	G	A	-	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr7	101062409	101062410	chr7:101062410:C:G	rs6465782	C	G	G	Sox3.mouse_HMG_3	3	1	-	1.2031993528215248	-5.546291382883525	GATGATTTGAAGTCAGG
chr7	101139178	101139179	chr7:101139179:G:A	rs1050955	G	A	G	Sox3.mouse_HMG_3	12	1	+	1.5094948930464112	1.777758879641091	GTTGAATTGTATGCTTT
chr7	101553406	101553407	chr7:101553407:C:T	rs13235234	C	T	.	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr7	101564992	101564993	chr7:101564993:C:T	rs73413466	C	T	C	Sox3.mouse_HMG_3	1	1	-	0.7991895936774882	3.89931953011478	CGTGAATGTCCTCCATG
chr7	101598529	101598530	chr7:101598530:C:T	rs138414382	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr7	101651691	101651692	chr7:101651692:T:C	rs202112968	T	C	T	Sox3.mouse_HMG_3	1	1	+	5.946401205921197	4.739618500254398	GTTGGATTGCATTCAGG
chr7	101811335	101811336	chr7:101811336:C:T	rs2529232	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr7	101863181	101863182	chr7:101863182:A:G	rs75577283	A	G	A	Sox3.mouse_HMG_3	12	1	-	2.948791534935693	-3.2440620324650737	GATGAATCTTTGTCATT
chr7	101875672	101875673	chr7:101875673:G:T	chr7:101875673:G:T	G	T	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	101903035	101903036	chr7:101903036:C:T	rs6961094	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr7	101941353	101941354	chr7:101941354:G:A	rs1541437	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr7	101993965	101993966	chr7:101993966:T:C	rs202159	T	C	C	Sox3.mouse_HMG_3	14	1	-	6.798246517501241	0.41630035107432906	CATGAATGGCAGCCAGG
chr7	102071624	102071625	chr7:102071625:C:T	rs10234321	C	T	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr7	102096269	102096270	chr7:102096270:G:A	rs201451	G	A	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr7	102106933	102106934	chr7:102106934:A:C	rs965863	A	C	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	102620113	102620114	chr7:102620114:A:G	rs376973054	A	G	.	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr7	102934941	102934942	chr7:102934942:T:C	rs143161618	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr7	103162644	103162645	chr7:103162645:A:G	rs562641568	A	G	a	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr7	103826686	103826687	chr7:103826687:T:C	rs11977571	T	C	T	Sox3.mouse_HMG_3	15	1	+	2.3343277574496706	-2.3800656542653975	AATCAATTCTAGTGATA
chr7	103857319	103857320	chr7:103857320:T:C	rs1404430	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr7	103857320	103857321	chr7:103857321:A:T	rs1404429	A	T	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	103875764	103875765	chr7:103875765:G:C	rs7784979	G	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr7	103875797	103875798	chr7:103875798:G:A	rs7784991	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr7	103875812	103875813	chr7:103875813:A:C	rs7784621	A	C	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr7	103932698	103932699	chr7:103932699:C:A	rs10487175	C	A	A	Sox3.mouse_HMG_3	3	1	-	1.429492039071729	-5.477002445442985	GATGAATGGGAATCCTA
chr7	103958223	103958224	chr7:103958224:T:C	rs6943822	T	C	T	Sox3.mouse_HMG_3	2	1	+	3.832166970017288	-2.7737121482136438	TATGGAGTGCATTCATT
chr7	104036703	104036704	chr7:104036704:T:C	rs4729945	T	C	t	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr7	104366726	104366727	chr7:104366727:A:C	rs7792363	A	C	A	Sox3.mouse_HMG_3	12	1	-	4.129537224897756	-2.251537621424154	CATAAAATGCATTCATA
chr7	104785363	104785364	chr7:104785364:G:A	rs4283980	G	A	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	104895124	104895125	chr7:104895125:T:C	rs3815553	T	C	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr7	105011720	105011721	chr7:105011721:T:C	rs2891761	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr7	105066912	105066913	chr7:105066913:C:T	rs12705297	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr7	105153147	105153148	chr7:105153148:T:C	rs138735129	T	C	T	Sox3.mouse_HMG_3	8	1	-	0.5526026643857107	1.1757193115635238	GATGATTGAGAGTCACG
chr7	105204646	105204647	chr7:105204647:T:C	rs41562	T	C	T	Sox3.mouse_HMG_3	0	1	+	1.402374431809898	-0.052496213526966096	TGTGAGTGCCATTCCTT
chr7	105204676	105204677	chr7:105204677:A:C	rs2237611	A	C	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr7	105519611	105519612	chr7:105519612:C:T	rs75116202	C	T	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr7	105680445	105680446	chr7:105680446:G:C	rs564926	G	C	G	Sox3.mouse_HMG_3	11	1	-	1.7003382697861582	6.350512995592297	GATGAATTCTCCTCAAT
chr7	105698795	105698796	chr7:105698796:C:G	rs11766337	C	G	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr7	105816930	105816931	chr7:105816931:G:C	rs6965296	G	C	G	Sox3.mouse_HMG_3	3	1	+	5.017589095682245	-1.7319016400228042	GGTGAAAGTCAGTCAAG
chr7	106089538	106089539	chr7:106089539:G:C	rs13226202	G	C	G	Sox3.mouse_HMG_3	13	1	-	2.652527191135462	-3.9547334193265575	GTTGGTTGACATTCATA
chr7	106138186	106138187	chr7:106138187:A:G	rs2005764	A	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	106167707	106167708	chr7:106167708:G:A	rs11768663	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr7	106420493	106420494	chr7:106420494:T:C	rs73723440	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	106425986	106425987	chr7:106425987:G:A	rs2704974	G	A	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr7	106470936	106470937	chr7:106470937:G:A	rs10241714	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr7	106523869	106523870	chr7:106523870:G:A	rs17367541	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr7	106611074	106611075	chr7:106611075:A:G	rs41820	A	G	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr7	106611105	106611106	chr7:106611106:T:C	rs965099483	T	C	T	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr7	106641644	106641645	chr7:106641645:G:A	rs893484777	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr7	106714527	106714528	chr7:106714528:A:C	rs342269	A	C	C	Sox3.mouse_HMG_3	2	1	-	2.9249872759501745	-3.8239926859214295	TATGTGTTTTAGTCATG
chr7	106770364	106770365	chr7:106770365:T:C	rs6959745	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr7	107170551	107170552	chr7:107170552:A:T	rs12536574	A	T	A	Sox3.mouse_HMG_3	4	1	+	4.801616043014899	-1.8058246214638123	TTTGAATTATATTGAGA
chr7	107405793	107405794	chr7:107405794:T:C	rs114647349	T	C	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr7	107685770	107685771	chr7:107685771:C:G	rs3801940	C	G	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr7	107719559	107719560	chr7:107719560:C:T	rs2028030	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr7	107725405	107725406	chr7:107725406:C:T	rs11972418	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr7	107817268	107817269	chr7:107817269:G:C	rs7799731	G	C	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr7	108058283	108058284	chr7:108058284:C:T	rs150841402	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr7	108197373	108197374	chr7:108197374:A:T	rs383341	A	T	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr7	108198987	108198988	chr7:108198988:C:T	rs369800	C	T	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr7	108246219	108246220	chr7:108246220:C:T	rs7777322	C	T	C	Sox3.mouse_HMG_3	1	1	+	0.00501430621604948	1.2117970118828503	TCTGAATGCCTGCCATG
chr7	108385798	108385799	chr7:108385799:G:A	rs12333431	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	108395716	108395717	chr7:108395717:G:A	rs12669879	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr7	108434075	108434076	chr7:108434076:C:A	rs10264851	C	A	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr7	108449810	108449811	chr7:108449811:C:T	rs17423264	C	T	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr7	108838248	108838249	chr7:108838249:A:G	rs1464836	A	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	108957955	108957956	chr7:108957956:C:T	rs111434581	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr7	109231875	109231876	chr7:109231876:T:C	rs148784959	T	C	T	Sox3.mouse_HMG_3	1	1	-	4.177846418064676	1.0777164816273828	GATCAATGTGATTCAAA
chr7	109503529	109503530	chr7:109503530:A:T	rs74529775	A	T	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr7	110236404	110236405	chr7:110236405:A:T	rs1115906	A	T	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr7	110253249	110253250	chr7:110253250:T:C	rs117376637	T	C	T	Sox3.mouse_HMG_3	15	1	-	0.5292249619496692	-0.3295563849067513	TTTGAGTGGCTTTCAAG
chr7	110465847	110465848	chr7:110465848:G:T	rs16873085	G	T	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr7	110522292	110522293	chr7:110522293:A:C	rs1567239	A	C	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr7	110522316	110522317	chr7:110522317:A:T	rs10953662	A	T	T	Sox3.mouse_HMG_3	6	1	-	6.665181583144321	-0.08586990203715006	GGTGAATTCTTGTCATA
chr7	110973705	110973706	chr7:110973706:C:T	rs758954	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr7	111004517	111004518	chr7:111004518:G:C	rs917763	G	C	G	Sox3.mouse_HMG_3	0	1	+	7.900276113566756	6.176484614430136	GATAAATGTCAGTCAAT
chr7	111165022	111165023	chr7:111165023:T:G	rs189727432	T	G	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	111229709	111229710	chr7:111229710:T:C	rs40362	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr7	111363114	111363115	chr7:111363115:A:G	rs79575423	A	G	A	Sox3.mouse_HMG_3	6	1	-	2.1926304987359755	-4.4153201428048225	TTTGGCTTGCATTCATG
chr7	111486857	111486858	chr7:111486858:A:T	rs2396358	A	T	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	111787890	111787891	chr7:111787891:T:C	rs118075237	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	111855896	111855897	chr7:111855897:G:A	rs12154389	G	A	G	Sox3.mouse_HMG_3	13	1	-	3.65830515513911	-2.94895545532291	GATGGAGTCCATTCATT
chr7	112005499	112005500	chr7:112005500:G:A	rs147226736	G	A	G	Sox3.mouse_HMG_3	2	1	-	2.6670516332364826	9.272930751467413	GGCTAATGGTATTCATG
chr7	112132459	112132460	chr7:112132460:T:C	rs78135136	T	C	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	112199367	112199368	chr7:112199368:G:A	rs10248735	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr7	112286447	112286448	chr7:112286448:G:A	rs78451118	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	112420674	112420675	chr7:112420675:C:T	rs28594984	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr7	112420693	112420694	chr7:112420694:T:C	rs114081746	T	C	T	Sox3.mouse_HMG_3	11	1	+	6.377155482030467	0.29254465592852297	ACTGACTTCTATTCATG
chr7	112592660	112592661	chr7:112592661:C:T	rs62476688	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr7	112628837	112628838	chr7:112628838:G:A	rs2520568	G	A	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr7	112709746	112709747	chr7:112709747:C:T	rs10261844	C	T	c	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr7	112799540	112799541	chr7:112799541:C:A	rs116278977	C	A	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	113102747	113102748	chr7:113102748:A:G	rs10278935	A	G	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr7	113368259	113368260	chr7:113368260:A:G	rs7790807	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	113873772	113873773	chr7:113873773:T:C	rs10223945	T	C	T	Sox3.mouse_HMG_3	8	1	+	1.5033051914627145	1.7654249363788204	GAAGAAGGTTAGTCAGA
chr7	114416563	114416564	chr7:114416564:G:C	rs10241421	G	C	G	Sox3.mouse_HMG_3	13	1	-	1.1120961886034884	-5.495164421858531	GGTGAAAGTGATTCAAG
chr7	114657124	114657125	chr7:114657125:G:A	rs936145	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr7	114660661	114660662	chr7:114660662:T:C	rs12154391	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr7	114786240	114786241	chr7:114786241:G:T	rs17137266	G	T	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr7	114981404	114981405	chr7:114981405:G:A	rs7799732	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr7	115059586	115059587	chr7:115059587:A:G	rs2709478	A	G	G	Sox3.mouse_HMG_3	2	1	-	2.8196179844279188	-3.786261133803011	TATGCATAATATTCAAG
chr7	115101252	115101253	chr7:115101253:C:T	rs185801249	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr7	115117799	115117800	chr7:115117800:G:A	rs79381303	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr7	115117812	115117813	chr7:115117813:G:A	rs77545667	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr7	115156135	115156136	chr7:115156136:C:G	rs71563610	C	G	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr7	115442351	115442352	chr7:115442352:A:G	rs12666306	A	G	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr7	115636052	115636053	chr7:115636053:C:T	rs1026702273	C	T	C	Sox3.mouse_HMG_3	7	1	-	0.8824205150389353	-5.671128199618793	GAAGAATGGAGTTCATG
chr7	115678407	115678408	chr7:115678408:T:A	rs75318878	T	A	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr7	116211122	116211123	chr7:116211123:G:A	rs143664050	G	A	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr7	116347996	116347997	chr7:116347997:C:T	rs73453023	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr7	116400484	116400485	chr7:116400485:T:C	rs1180286	T	C	C	Sox3.mouse_HMG_3	12	1	+	4.59703296891399	-1.5958205984867755	TGTGAATTACATTCTAT
chr7	116435308	116435309	chr7:116435309:A:G	rs67982517	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	116511100	116511101	chr7:116511101:T:C	rs6466579	T	C	T	Sox3.mouse_HMG_3	10	1	-	10.830274502285537	4.222323860744739	GATAAATTACATTCATT
chr7	116570325	116570326	chr7:116570326:T:C	rs112353092	T	C	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr7	117124867	117124868	chr7:117124868:C:T	rs186146156	C	T	c	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr7	117184062	117184063	chr7:117184063:G:A	rs55912105	G	A	G	Sox3.mouse_HMG_3	8	1	+	4.9445316239183885	4.321414976740575	AATGAAAGGCTTTCATG
chr7	117250939	117250940	chr7:117250940:G:A	rs78086821	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr7	117274042	117274043	chr7:117274043:G:A	rs186214842	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr7	117411894	117411895	chr7:117411895:T:A	rs12333572	T	A	A	Sox3.mouse_HMG_3	5	1	-	5.25624745238689	-1.3511932120918206	TATAAATTTTATTCTTA
chr7	117467652	117467653	chr7:117467653:C:A	rs43033	C	A	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr7	117645479	117645480	chr7:117645480:A:G	rs35131082	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr7	117795909	117795910	chr7:117795910:T:C	rs28626909	T	C	C	Sox3.mouse_HMG_3	4	1	-	2.731581455732825	-3.6512352722612436	GATGATTGGGAGTCAGA
chr7	117902473	117902474	chr7:117902474:G:A	chr7:117902474:G:A	G	A	G	Sox3.mouse_HMG_3	12	1	+	2.33679246699635	2.60505645359103	GTTAAATGATATGCATT
chr7	117975262	117975263	chr7:117975263:T:C	rs10226992	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr7	117996368	117996369	chr7:117996369:T:C	rs915161657	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	118076810	118076811	chr7:118076811:T:G	rs17140765	T	G	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	118196364	118196365	chr7:118196365:T:C	rs62466476	T	C	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr7	118311170	118311171	chr7:118311171:G:A	rs75987474	G	A	g	Sox3.mouse_HMG_3	0	1	-	2.5808989972437812	4.035769642580646	CATGGATGAGAGTCATT
chr7	118311189	118311190	chr7:118311190:A:T	rs368110530	A	T	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr7	118668934	118668935	chr7:118668935:A:G	rs1721219	A	G	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr7	118711756	118711757	chr7:118711757:A:G	rs4730888	A	G	a	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr7	119665953	119665954	chr7:119665954:T:G	rs148103724	T	G	T	Sox3.mouse_HMG_3	10	1	-	2.6695938083982576	-4.081457676783212	GAGGAATTGCAGTCTTT
chr7	119929754	119929755	chr7:119929755:C:T	rs35494028	C	T	T	Sox3.mouse_HMG_3	3	1	-	3.5133136321317258	-2.2682512553975043	TATGCTTGTTAGTCATG
chr7	119969014	119969015	chr7:119969015:G:A	rs75842770	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr7	120110365	120110366	chr7:120110366:C:T	rs149430305	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr7	120110390	120110391	chr7:120110391:C:A	rs114258196	C	A	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr7	120110399	120110400	chr7:120110400:C:T	rs76432237	C	T	c	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr7	120733728	120733729	chr7:120733729:C:T	rs7807447	C	T	C	Sox3.mouse_HMG_3	15	1	+	2.4514207245974364	7.1658141363125045	GCTGAATTTTATTCTCG
chr7	120988782	120988783	chr7:120988783:C:G	rs112499014	C	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr7	120989426	120989427	chr7:120989427:T:C	rs2525740	T	C	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr7	120991774	120991775	chr7:120991775:A:C	rs78992258	A	C	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr7	120991785	120991786	chr7:120991786:C:T	rs146257969	C	T	G	Sox3.mouse_HMG_3	9	1	+	2.2020219669113983	2.209658643903146	GATGAATTTCGTTTAAA
chr7	120991791	120991792	chr7:120991792:A:C	rs2525741	A	C	C	Sox3.mouse_HMG_3	15	1	+	2.2020219669113983	-0.24856198056684908	GATGAATTTCGTTTAAA
chr7	121015621	121015622	chr7:121015622:G:T	rs4730984	G	T	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr7	121021370	121021371	chr7:121021371:T:G	rs7778149	T	G	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	121059376	121059377	chr7:121059377:C:T	rs7808593	C	T	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr7	121438090	121438091	chr7:121438091:G:A	rs9656283	G	A	G	Sox3.mouse_HMG_3	0	1	+	0.8379791947968821	0.01269529365053812	GATAAATGGCTTTCACT
chr7	121634987	121634988	chr7:121634988:T:C	rs12706362	T	C	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	121842974	121842975	chr7:121842975:C:A	rs58970730	C	A	C	Sox3.mouse_HMG_3	9	1	+	2.171007118451321	-3.8832115060569983	GTTGAATGGCCTCCATT
chr7	122257283	122257284	chr7:122257284:A:G	rs59757897	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr7	122749342	122749343	chr7:122749343:T:A	rs2190252	T	A	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr7	122843186	122843187	chr7:122843187:A:T	rs2501450	A	T	A	Sox3.mouse_HMG_3	1	1	+	8.164491721882762	5.194414913693665	AATGAATGCTAGACAAA
chr7	123581179	123581180	chr7:123581180:T:A	rs79891719	T	A	T	Sox3.mouse_HMG_3	12	1	+	1.0357089809527806	-5.0771018787744495	CATGAATGTTGCTCAGG
chr7	123699866	123699867	chr7:123699867:C:T	rs7798111	C	T	C	Sox3.mouse_HMG_3	9	1	+	4.916459842746749	4.924096519738497	GATGAATTTCATTAGTA
chr7	123699887	123699888	chr7:123699888:T:A	rs574395125	T	A	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr7	123770634	123770635	chr7:123770635:A:G	rs10276975	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr7	124208386	124208387	chr7:124208387:C:A	rs6974549	C	A	C	Sox3.mouse_HMG_3	3	1	+	3.3523905621121095	4.320316410287928	CAGCAATGTTATTCATG
chr7	124250419	124250420	chr7:124250420:A:T	rs7804597	A	T	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr7	124566409	124566410	chr7:124566410:A:G	rs140861262	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	124723092	124723093	chr7:124723093:A:C	rs186973404	A	C	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr7	124801343	124801344	chr7:124801344:T:C	rs1034795	T	C	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr7	124801347	124801348	chr7:124801348:A:T	rs1034794	A	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr7	124840522	124840523	chr7:124840523:C:T	rs34014883	C	T	C	Sox3.mouse_HMG_3	9	1	+	3.0284077209229663	3.0360443979147123	GATAAATTTCATTTAAA
chr7	125224172	125224173	chr7:125224173:T:A	rs73440532	T	A	-	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr7	125844314	125844315	chr7:125844315:T:C	rs1419592	T	C	T	Sox3.mouse_HMG_3	10	1	-	5.997379175352886	-0.6105714661879101	AGTGAATTTCATTTATT
chr7	126114054	126114055	chr7:126114055:C:G	rs10258634	C	G	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr7	126651167	126651168	chr7:126651168:C:T	rs10954131	C	T	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr7	126790944	126790945	chr7:126790945:C:A	rs10248154	C	A	c	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	126882064	126882065	chr7:126882065:A:G	rs141549404	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	126993926	126993927	chr7:126993927:C:T	rs114099534	C	T	C	Sox3.mouse_HMG_3	3	1	-	3.4223242021304863	-2.359240685398744	TAAGAATTGCAGTCCTT
chr7	127245664	127245665	chr7:127245665:A:G	rs17862333	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr7	127507573	127507574	chr7:127507574:A:G	rs12671806	A	G	A	Sox3.mouse_HMG_3	14	1	+	2.6164771154244955	-3.765469051002416	CATGAATTTTACACATT
chr7	127779182	127779183	chr7:127779183:A:G	rs6968199	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.6636031579200883	-4.825231764150776	CGTGAATGGTAGTGACA
chr7	128021487	128021488	chr7:128021488:G:A	rs75789733	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr7	128075112	128075113	chr7:128075113:A:C	rs322833	A	C	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr7	128109085	128109086	chr7:128109086:A:T	rs74930402	A	T	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr7	128155353	128155354	chr7:128155354:G:A	rs1421418843	G	A	.	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	128218114	128218115	chr7:128218115:G:A	rs78332539	G	A	G	Sox3.mouse_HMG_3	9	1	-	8.116903092553034	8.124539769544782	GATAAATGACATTCACA
chr7	128244623	128244624	chr7:128244624:A:G	rs961374996	A	G	a	Sox3.mouse_HMG_3	10	1	+	0.6589811787333357	-5.948969462807462	GTTGAAAGCTATCCAAG
chr7	128322183	128322184	chr7:128322184:G:C	rs6467172	G	C	C	Sox3.mouse_HMG_3	7	1	+	2.315750723814153	-3.937693398393236	AATGGAAGTTATTCAAA
chr7	128420670	128420671	chr7:128420671:T:G	rs11973781	T	G	T	Sox3.mouse_HMG_3	2	1	+	1.6155196761990354	-5.133460285672569	TATGCATGCTTTTCAAT
chr7	128705116	128705117	chr7:128705117:G:T	rs72607753	G	T	.	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr7	128847838	128847839	chr7:128847839:G:A	rs2291568	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr7	128990258	128990259	chr7:128990259:T:C	rs6969930	T	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	129185393	129185394	chr7:129185394:G:A	rs78721167	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr7	129215283	129215284	chr7:129215284:G:A	rs80213676	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	129271848	129271849	chr7:129271849:A:C	chr7:129271849:A:C	A	C	A	Sox3.mouse_HMG_3	10	1	+	3.094684052104456	-3.6563674330770137	AATGAATTACACTTATT
chr7	129440778	129440779	chr7:129440779:A:G	rs17552854	A	G	A	Sox3.mouse_HMG_3	1	1	+	9.331588745987139	6.231458809549848	TATGAATGCCAGTTATT
chr7	129561285	129561286	chr7:129561286:A:T	rs56052358	A	T	A	Sox3.mouse_HMG_3	2	1	-	0.8995303444361935	-4.827798369903429	AATGGATGGCAGTGAGG
chr7	129646595	129646596	chr7:129646596:A:G	rs6949152	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr7	129758680	129758681	chr7:129758681:C:T	rs28480046	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	129758708	129758709	chr7:129758709:G:C	rs9649538	G	C	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr7	129861494	129861495	chr7:129861495:T:C	rs17162136	T	C	t	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	130091714	130091715	chr7:130091715:C:T	rs17164379	C	T	T	Sox3.mouse_HMG_3	1	1	+	6.3117996168965504	7.518582322563351	TCTGAATGTTAGTAATG
chr7	130128310	130128311	chr7:130128311:C:G	rs75791996	C	G	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr7	130280398	130280399	chr7:130280399:T:C	rs10215911	T	C	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr7	130305408	130305409	chr7:130305409:C:A	rs79647391	C	A	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	130348847	130348848	chr7:130348848:A:T	rs1009905	A	T	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr7	130419471	130419472	chr7:130419472:C:T	rs186975929	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr7	130712634	130712635	chr7:130712635:G:T	rs544051666	G	T	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr7	130979967	130979968	chr7:130979968:T:C	rs205741	T	C	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	130979978	130979979	chr7:130979979:C:T	rs205742	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr7	130982157	130982158	chr7:130982158:T:C	rs117480641	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr7	130989376	130989377	chr7:130989377:T:G	rs372941352	T	G	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr7	131082037	131082038	chr7:131082038:A:C	rs6467345	A	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	131124169	131124170	chr7:131124170:C:T	rs73147700	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr7	131365998	131365999	chr7:131365999:G:A	rs4099560	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.929678286688976	-3.851886600840257	TGTGAAAGCTCTTCATA
chr7	131366005	131366006	chr7:131366006:C:T	rs970918505	C	T	C	Sox3.mouse_HMG_3	10	1	+	1.929678286688976	1.929678286688976	TGTGAAAGCTCTTCATA
chr7	131536795	131536796	chr7:131536796:A:T	rs1733876	A	T	T	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr7	131849009	131849010	chr7:131849010:C:G	rs10264040	C	G	C	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr7	131849056	131849057	chr7:131849057:G:A	rs2333896	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr7	131850829	131850830	chr7:131850830:A:G	rs113825498	A	G	G	Sox3.mouse_HMG_3	16	1	+	1.474546041941324	1.5104864983938497	CAGGAATTACAGGCATA
chr7	131905466	131905467	chr7:131905467:T:G	rs1991190	T	G	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr7	132067433	132067434	chr7:132067434:C:T	rs79840332	C	T	C	Sox3.mouse_HMG_3	10	1	-	9.085114792319125	15.693065433859925	GGTGAATGCCGTTCATA
chr7	132165016	132165017	chr7:132165017:G:T	rs145860702	G	T	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr7	132169824	132169825	chr7:132169825:G:A	rs7786869	G	A	A	Sox3.mouse_HMG_3	1	1	+	0.6170852838148169	3.7172152202521094	CGTGATTTGTATGCATG
chr7	132169859	132169860	chr7:132169860:C:T	rs57305701	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr7	132377002	132377003	chr7:132377003:C:T	rs75255442	C	T	C	Sox3.mouse_HMG_3	12	1	+	0.7956680652498269	6.988521632650593	CATGAATGCCAGCAAAA
chr7	132387806	132387807	chr7:132387807:T:C	rs75598664	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr7	132487164	132487165	chr7:132487165:T:G	rs156926	T	G	T	Sox3.mouse_HMG_3	0	1	-	2.0737486798636042	1.1752410818733288	AGTGAATGTTATCAATG
chr7	132581218	132581219	chr7:132581219:A:G	rs12533690	A	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	132718125	132718126	chr7:132718126:T:C	rs583367	T	C	T	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr7	132986773	132986774	chr7:132986774:C:T	rs4731927	C	T	T	Sox3.mouse_HMG_3	3	1	-	4.38324003102711	-1.398324856502122	AATGTATGTCTTTCATG
chr7	133583710	133583711	chr7:133583711:G:T	rs3909550	G	T	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr7	133588281	133588282	chr7:133588282:T:A	rs62470021	T	A	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	133676113	133676114	chr7:133676114:T:C	rs10263225	T	C	T	Sox3.mouse_HMG_3	12	1	+	6.704140432120105	0.5112868647193388	TGAGAATTGCAGTCATT
chr7	133901335	133901336	chr7:133901336:A:G	rs12707127	A	G	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	134290430	134290431	chr7:134290431:A:G	rs7486	A	G	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr7	134301481	134301482	chr7:134301482:A:G	rs2244548	A	G	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	134565672	134565673	chr7:134565673:A:G	rs151297697	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr7	134599379	134599380	chr7:134599380:A:G	rs142013796	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	134612050	134612051	chr7:134612051:A:G	rs7788830	A	G	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	134720849	134720850	chr7:134720850:T:A	rs10488453	T	A	T	Sox3.mouse_HMG_3	9	1	+	1.2224734638170667	-4.839381837682997	TGTGTCTTATATTCATG
chr7	134755648	134755649	chr7:134755649:A:G	rs6958004	A	G	A	Sox3.mouse_HMG_3	15	1	-	0.0031389376573094374	-4.711254474057759	GCTGACTGCCAGTTATG
chr7	134787797	134787798	chr7:134787798:G:C	rs3800708	G	C	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr7	134787808	134787809	chr7:134787809:C:T	rs3800709	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr7	134865086	134865087	chr7:134865087:A:G	rs3800745	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	135146885	135146886	chr7:135146886:T:C	rs75952361	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr7	135147797	135147798	chr7:135147798:G:C	rs751551076	G	C	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr7	135174939	135174940	chr7:135174940:C:T	rs292523	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	135371362	135371363	chr7:135371363:A:C	rs116539335	A	C	A	Sox3.mouse_HMG_3	10	1	+	3.5841680844021813	-3.166883400779289	AATAAATGCTATTCTAG
chr7	135620776	135620777	chr7:135620777:T:C	rs554428041	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	135774389	135774390	chr7:135774390:C:G	rs73723932	C	G	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr7	135792021	135792022	chr7:135792022:G:A	rs72611509	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr7	135965614	135965615	chr7:135965615:T:C	rs10261276	T	C	t	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr7	135971351	135971352	chr7:135971352:A:G	rs4142515	A	G	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr7	136258515	136258516	chr7:136258516:G:A	rs1365353	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	136345288	136345289	chr7:136345289:C:T	rs138941198	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	137147552	137147553	chr7:137147553:C:T	rs832968	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr7	137206711	137206712	chr7:137206712:T:G	rs4732247	T	G	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr7	137737398	137737399	chr7:137737399:A:T	rs9784934	A	T	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	137887184	137887185	chr7:137887185:C:T	rs6963146	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	137986793	137986794	chr7:137986794:A:G	rs11770714	A	G	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr7	138127121	138127122	chr7:138127122:T:C	rs2440799	T	C	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	138272930	138272931	chr7:138272931:A:G	rs1362987	A	G	G	Sox3.mouse_HMG_3	2	1	-	2.606584928505938	-3.9992941897249907	GTTGAATTGTAATCACC
chr7	138317336	138317337	chr7:138317337:A:G	rs368043	A	G	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr7	138564057	138564058	chr7:138564058:A:T	rs10254440	A	T	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr7	139048129	139048130	chr7:139048130:T:C	rs9886296	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr7	139079313	139079314	chr7:139079314:G:A	rs2236424	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr7	139183324	139183325	chr7:139183325:T:C	rs75889703	T	C	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr7	139366263	139366264	chr7:139366264:A:G	rs117900283	A	G	A	Sox3.mouse_HMG_3	12	1	-	2.4764097036198747	-3.716443863780893	GTTAAATTCCTTTCATG
chr7	139447813	139447814	chr7:139447814:G:A	rs10277605	G	A	g	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr7	139551079	139551080	chr7:139551080:T:C	rs11773832	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr7	139647814	139647815	chr7:139647815:T:C	rs73156868	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr7	139818765	139818766	chr7:139818766:G:A	rs76278415	G	A	g	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr7	139818819	139818820	chr7:139818820:T:C	rs77943929	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	139942906	139942907	chr7:139942907:C:T	rs17161280	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr7	140164961	140164962	chr7:140164962:T:C	rs62491434	T	C	C	Sox3.mouse_HMG_3	1	1	+	6.4791600798573254	5.272377374190526	GTTGAATGATAATCAGG
chr7	140164995	140164996	chr7:140164996:A:T	rs62491435	A	T	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr7	140349120	140349121	chr7:140349121:A:G	rs189695004	A	G	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr7	140456922	140456923	chr7:140456923:G:A	rs78256678	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	140667352	140667353	chr7:140667353:C:T	rs10260676	C	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	140745520	140745521	chr7:140745521:T:C	rs907094688	T	C	T	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr7	141223613	141223614	chr7:141223614:G:A	rs11978917	G	A	g	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr7	141698787	141698788	chr7:141698788:A:T	rs10261374	A	T	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr7	141714516	141714517	chr7:141714517:A:G	rs2072180	A	G	A	Sox3.mouse_HMG_3	2	1	-	2.616205969465849	-3.9896731487650836	TATACATTTCATTCAAA
chr7	141776149	141776150	chr7:141776150:C:G	rs62477702	C	G	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	141873057	141873058	chr7:141873058:A:G	rs1285895	A	G	a	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr7	142046313	142046314	chr7:142046314:T:C	rs10258756	T	C	C	Sox3.mouse_HMG_3	1	1	+	1.3884141817542883	0.18163147608748842	GTTGACTTTCTTTCATG
chr7	142380568	142380569	chr7:142380569:A:G	rs11763563	A	G	A	Sox3.mouse_HMG_3	0	1	-	5.2921879088394155	3.837317263502549	TATAAATTTTATTCCTG
chr7	142630311	142630312	chr7:142630312:T:G	rs7385399	T	G	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr7	142760626	142760627	chr7:142760627:A:C	rs369005346	A	C	a	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr7	142793522	142793523	chr7:142793523:G:A	rs73452817	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	142810130	142810131	chr7:142810131:A:C	rs57055421	A	C	C	Sox3.mouse_HMG_3	8	1	+	0.9760336869755271	1.1563676654754083	GATGAATTATTGGCAAG
chr7	142848586	142848587	chr7:142848587:G:A	rs6951992	G	A	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr7	142914226	142914227	chr7:142914227:G:T	rs4252491	G	T	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr7	143126834	143126835	chr7:143126835:C:T	rs10281506	C	T	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	143130860	143130861	chr7:143130861:G:A	rs315284	G	A	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr7	143343481	143343482	chr7:143343482:T:A	rs2367944	T	A	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	144063907	144063908	chr7:144063908:G:A	rs2951354	G	A	g	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr7	144384527	144384528	chr7:144384528:C:T	rs60008677	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr7	144728894	144728895	chr7:144728895:G:A	rs61093896	G	A	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr7	144763601	144763602	chr7:144763602:T:C	rs34096470	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr7	144842639	144842640	chr7:144842640:C:A	rs747927023	C	A	C	Sox3.mouse_HMG_3	7	1	-	1.28514899177969	0.435116049549618	TGAGAAGGTCAGTCATG
chr7	144974583	144974584	chr7:144974584:C:T	rs146020120	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr7	145142993	145142994	chr7:145142994:G:C	rs60206927	G	C	G	Sox3.mouse_HMG_3	9	1	-	2.8738044887429144	-2.466124518631651	CATGAGAGGCAGTCATG
chr7	145845981	145845982	chr7:145845982:T:C	rs6975640	T	C	T	Sox3.mouse_HMG_3	14	1	-	2.925603282296165	-3.4563428841307466	TATGGAATACAGTCATA
chr7	146224075	146224076	chr7:146224076:A:T	rs2539747	A	T	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr7	146424797	146424798	chr7:146424798:A:T	rs1639516	A	T	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	147050496	147050497	chr7:147050497:G:A	rs17170312	G	A	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr7	147190649	147190650	chr7:147190650:C:G	rs10239280	C	G	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr7	147271465	147271466	chr7:147271466:C:G	rs141073227	C	G	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr7	147334729	147334730	chr7:147334730:T:C	rs826796	T	C	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr7	147342375	147342376	chr7:147342376:A:C	rs16883356	A	C	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	147408815	147408816	chr7:147408816:A:G	rs7803877	A	G	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr7	147497736	147497737	chr7:147497737:C:T	rs16883526	C	T	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr7	147595252	147595253	chr7:147595253:T:C	rs1013872	T	C	T	Sox3.mouse_HMG_3	7	1	+	4.541243922659008	-0.862167257318309	TATGAATTCCCTTCTTA
chr7	147669637	147669638	chr7:147669638:C:T	rs151010942	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	147701016	147701017	chr7:147701017:A:G	rs148720644	A	G	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr7	147879318	147879319	chr7:147879319:C:T	rs1922892	C	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr7	147991054	147991055	chr7:147991055:G:A	rs116951404	G	A	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr7	148016849	148016850	chr7:148016850:T:C	rs12674206	T	C	T	Sox3.mouse_HMG_3	10	1	-	2.616753010059808	-3.991197631480989	AAGGAATGCTATTCCAG
chr7	148016863	148016864	chr7:148016864:T:C	rs12674208	T	C	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr7	148104550	148104551	chr7:148104551:A:G	rs4266567	A	G	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr7	148104574	148104575	chr7:148104575:C:T	rs141437704	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr7	148115413	148115414	chr7:148115414:G:A	rs17548298	G	A	G	Sox3.mouse_HMG_3	14	1	+	1.728453655566405	8.110399821993315	TGTTAATTGCATTCGTA
chr7	148339098	148339099	chr7:148339099:G:A	rs17170956	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr7	148353053	148353054	chr7:148353054:A:G	rs1730433	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr7	148385331	148385332	chr7:148385332:T:C	rs1637837	T	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	148465617	148465618	chr7:148465618:A:C	rs12531221	A	C	-	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr7	148501836	148501837	chr7:148501837:C:T	rs56104059	C	T	T	Sox3.mouse_HMG_3	1	1	-	1.061859399927129	4.161989336364421	CGTGAATGACATGCCTG
chr7	148501855	148501856	chr7:148501856:G:A	rs77182734	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr7	148713073	148713074	chr7:148713074:C:T	rs780726361	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr7	148863936	148863937	chr7:148863937:G:C	rs10259102	G	C	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr7	148863965	148863966	chr7:148863966:T:A	rs1880356	T	A	T	Sox3.mouse_HMG_3	5	1	-	1.3358832913274448	-5.271557373151264	GGCGAATGCTGTTCATT
chr7	149236850	149236851	chr7:149236851:C:A	rs7779475	C	A	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr7	149680790	149680791	chr7:149680791:T:C	rs12537211	T	C	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr7	149881790	149881791	chr7:149881791:G:A	rs4725837	G	A	.	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr7	149886080	149886081	chr7:149886081:C:T	rs10807976	C	T	.	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr7	150169545	150169546	chr7:150169546:C:T	rs182405332	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr7	150320972	150320973	chr7:150320973:T:C	rs190159849	T	C	t	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr7	150410761	150410762	chr7:150410762:A:T	chr7:150410762:A:T	A	T	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr7	150421058	150421059	chr7:150421059:T:C	rs10270545	T	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr7	150433663	150433664	chr7:150433664:T:C	rs2030680	T	C	T	Sox3.mouse_HMG_3	9	1	+	0.7746949638977125	0.7670582869059666	GAAGAAGTGTATTCAGC
chr7	150495104	150495105	chr7:150495105:T:C	rs10227257	T	C	-	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr7	150565495	150565496	chr7:150565496:C:T	rs6969418	C	T	C	Sox3.mouse_HMG_3	8	1	-	0.6293731748020428	0.00625652762422968	TGTGAACTGCAGGCATG
chr7	150801402	150801403	chr7:150801403:T:C	rs114485788	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr7	150801419	150801420	chr7:150801420:G:T	rs1108578	G	T	G	Sox3.mouse_HMG_3	13	1	-	3.8792008423771405	-2.5034358316002354	AATGAATGGCTGTCCTG
chr7	150801431	150801432	chr7:150801432:T:C	rs11767388	T	C	t	Sox3.mouse_HMG_3	1	1	-	3.8792008423771405	0.7790709059398495	AATGAATGGCTGTCCTG
chr7	150941395	150941396	chr7:150941396:G:A	rs2907948	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr7	151238965	151238966	chr7:151238966:C:G	rs1870238	C	G	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr7	151298440	151298441	chr7:151298441:C:G	rs219273	C	G	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	151366586	151366587	chr7:151366587:G:A	rs184600650	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr7	151445891	151445892	chr7:151445892:A:C	rs12539880	A	C	A	Sox3.mouse_HMG_3	16	1	-	4.103797585122094	5.290727101327116	AATGAACGCTATACATT
chr7	151455794	151455795	chr7:151455795:C:T	rs73476481	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr7	151690862	151690863	chr7:151690863:G:A	rs1358403293	G	A	-	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr7	151690877	151690878	chr7:151690878:C:T	rs2024266	C	T	-	Sox3.mouse_HMG_3	0	1	+	2.096780021797673	3.551650667134539	CGTGAATGGCAGTGAGT
chr7	151733622	151733623	chr7:151733623:G:A	rs4726088	G	A	-	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr7	151802759	151802760	chr7:151802760:C:T	rs149332435	C	T	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr7	151897789	151897790	chr7:151897790:G:A	rs146542538	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	152402500	152402501	chr7:152402501:A:C	rs71220428	A	C	A	Sox3.mouse_HMG_3	15	1	-	1.9318030051861794	-1.190787805907062	CATGAATTGTATAGATC
chr7	152519529	152519530	chr7:152519530:G:A	rs869337	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr7	152617285	152617286	chr7:152617286:G:C	rs115955653	G	C	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr7	152665924	152665925	chr7:152665925:T:C	rs3111471	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr7	152751914	152751915	chr7:152751915:A:G	rs73488898	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr7	152864527	152864528	chr7:152864528:G:A	rs7792217	G	A	G	Sox3.mouse_HMG_3	16	1	+	3.664224521962935	3.6282840655104094	GTTGATTTACAGTCAGG
chr7	152911220	152911221	chr7:152911221:G:A	rs6954929	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr7	152985159	152985160	chr7:152985160:A:G	rs73483251	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr7	153378043	153378044	chr7:153378044:A:G	rs4726291	A	G	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr7	153475316	153475317	chr7:153475317:A:G	rs575079161	A	G	A	Sox3.mouse_HMG_3	8	1	-	2.3549131622150195	2.617032907131125	AATGGATGTCAGTAATT
chr7	153542091	153542092	chr7:153542092:A:G	rs4576343	A	G	G	Sox3.mouse_HMG_3	9	1	-	5.378759075244365	5.371122398252619	AGTGGATTCTATTCAAA
chr7	153838196	153838197	chr7:153838197:C:A	rs10270858	C	A	C	Sox3.mouse_HMG_3	7	1	-	0.5305809597070603	-0.3194519825230111	TATGCATGGGATTCCTG
chr7	154255404	154255405	chr7:154255405:T:C	rs77411216	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr7	154766220	154766221	chr7:154766221:A:G	rs6966524	A	G	G	Sox3.mouse_HMG_3	4	1	+	5.771213810643395	-0.6116029173506734	GTGGAATGACATTCAGA
chr7	155082203	155082204	chr7:155082204:T:C	rs980309	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr7	155082207	155082208	chr7:155082208:G:A	rs1946917	G	A	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr7	155163587	155163588	chr7:155163588:C:A	rs1626300	C	A	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr7	155330086	155330087	chr7:155330087:A:T	rs147215771	A	T	-	Sox3.mouse_HMG_3	14	1	+	1.20646084263908	-5.175485323787831	AATGAAGGATCTTCAGG
chr7	155371017	155371018	chr7:155371018:T:C	rs67853310	T	C	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr7	155443282	155443283	chr7:155443283:T:C	rs1477216	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr7	155487101	155487102	chr7:155487102:G:A	rs115028074	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr7	155508242	155508243	chr7:155508243:A:G	rs7779639	A	G	A	Sox3.mouse_HMG_3	9	1	-	1.7500165188616337	1.7423798418698895	TGTGAATGCTAGTCTCT
chr7	155635979	155635980	chr7:155635980:T:C	rs1424613	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr7	155753413	155753414	chr7:155753414:T:A	rs28431141	T	A	T	Sox3.mouse_HMG_3	8	1	+	5.5865395584324835	5.668325324848708	TGTGAGTGTCATTCAGG
chr7	155756155	155756156	chr7:155756156:A:G	rs28487953	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	155847980	155847981	chr7:155847981:C:T	rs12532198	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr7	155900636	155900637	chr7:155900637:A:G	rs62481732	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr7	155914132	155914133	chr7:155914133:C:T	rs74944975	C	T	C	Sox3.mouse_HMG_3	0	1	-	1.0276940082283526	0.20241010708200624	GTTGAACGTGAGTCATT
chr7	155986448	155986449	chr7:155986449:G:A	rs79329808	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr7	156058929	156058930	chr7:156058930:C:T	rs4294053	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	156064579	156064580	chr7:156064580:G:T	rs73477033	G	T	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr7	156132565	156132566	chr7:156132566:G:C	rs2364509	G	C	C	Sox3.mouse_HMG_3	3	1	+	2.7544758534774783	-3.995014882227573	TTTGAAAGCCAATCATG
chr7	156229241	156229242	chr7:156229242:G:A	rs373519241	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr7	156251330	156251331	chr7:156251331:C:T	rs75393775	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr7	156415481	156415482	chr7:156415482:G:A	rs1880342	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr7	156725038	156725039	chr7:156725039:A:G	rs145029466	A	G	A	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr7	156769345	156769346	chr7:156769346:A:C	rs78118131	A	C	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr7	156802340	156802341	chr7:156802341:T:C	rs61499361	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr7	156897872	156897873	chr7:156897873:A:G	rs116598687	A	G	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr7	157044260	157044261	chr7:157044261:A:C	rs117480812	A	C	G	Sox3.mouse_HMG_3	1	1	+	3.0482467874340675	-1.1286127264218269	CATGACTTCTATTTATG
chr7	157353351	157353352	chr7:157353352:A:G	rs6965468	A	G	g	Sox3.mouse_HMG_3	6	1	-	6.9440235651616575	0.33607292362085883	GGTGAATGGTATACAGG
chr7	157390456	157390457	chr7:157390457:T:G	rs73505218	T	G	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr7	157422708	157422709	chr7:157422709:G:C	rs117553662	G	C	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr7	157484727	157484728	chr7:157484728:G:T	rs77676146	G	T	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr7	157489707	157489708	chr7:157489708:A:T	rs79593883	A	T	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr7	157519293	157519294	chr7:157519294:A:C	rs4716482	A	C	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr7	157558465	157558466	chr7:157558466:G:A	rs76294067	G	A	G	Sox3.mouse_HMG_3	0	1	+	-0.30824362934870764	-1.1335275304950516	GGTCAATGGCGTTCAGG
chr7	157773327	157773328	chr7:157773328:T:C	rs57948129	T	C	C	Sox3.mouse_HMG_3	15	1	+	2.6396676754493935	-2.074725736265675	TGTGAGTGGGAGTCATG
chr7	157773335	157773336	chr7:157773336:A:G	rs73165841	A	G	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr7	157835448	157835449	chr7:157835449:G:A	rs58144261	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr7	157882015	157882016	chr7:157882016:T:C	rs4645466	T	C	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr7	157886586	157886587	chr7:157886587:A:G	rs62478063	A	G	A	Sox3.mouse_HMG_3	2	1	-	0.582855208268213	-6.02302390996272	TGTGAATGGCACACAGG
chr7	157929925	157929926	chr7:157929926:C:A	rs72621121	C	A	C	Sox3.mouse_HMG_3	9	1	-	0.8859789769613982	6.2335446613277075	ACTGAATTCGCTTCATG
chr7	157932856	157932857	chr7:157932857:T:C	rs34995339	T	C	-	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr7	157933044	157933045	chr7:157933045:G:A	rs117375918	G	A	-	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	157939060	157939061	chr7:157939061:T:C	rs7805765	T	C	N	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	157939136	157939137	chr7:157939137:C:T	rs10949674	C	T	-	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr7	157975704	157975705	chr7:157975705:T:C	rs4716858	T	C	T	Sox3.mouse_HMG_3	12	1	+	1.2407524078880867	-4.95210115951268	CGTGTCTGGTATTCATG
chr7	157991956	157991957	chr7:157991957:C:T	rs10949682	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr7	158317758	158317759	chr7:158317759:T:A	rs80311153	T	A	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr7	158320697	158320698	chr7:158320698:T:G	rs896779	T	G	T	Sox3.mouse_HMG_3	12	1	+	2.4019713203830144	-3.979103525938896	CAACAATGATATTCATC
chr7	158362029	158362030	chr7:158362030:G:C	rs6980058	G	C	C	Sox3.mouse_HMG_3	13	1	-	1.4541886986101924	-5.153071911851828	GATGAGTGACAGACAGA
chr7	158385006	158385007	chr7:158385007:C:A	rs7455219	C	A	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr7	158473938	158473939	chr7:158473939:G:T	rs1476200	G	T	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr7	158649728	158649729	chr7:158649729:G:A	rs12540177	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr7	158705498	158705499	chr7:158705499:G:T	rs77953019	G	T	G	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr7	158761394	158761395	chr7:158761395:C:T	rs112709510	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr7	158803614	158803615	chr7:158803615:G:A	rs2788495	G	A	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr7	158868920	158868921	chr7:158868921:A:T	rs75732533	A	T	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr7	158993154	158993155	chr7:158993155:T:C	rs4481540	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr7	159058542	159058543	chr7:159058543:T:G	rs2098349	T	G	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr7	159147206	159147207	chr7:159147207:C:T	rs112827039	C	T	-	Sox3.mouse_HMG_3	3	1	-	1.2919429060923087	-4.4896219814369225	GATGGATGACAGGCAGA
chr7	159208181	159208182	chr7:159208182:T:G	rs429102	T	G	G	Sox3.mouse_HMG_3	15	1	+	4.8208431588871585	1.698252347793917	GATGAATGGTAGGTATA
chr8	289874	289875	chr8:289875:G:T	rs7826512	G	T	.	Sox3.mouse_HMG_3	8	1	+	0.7479258147888828	0.043023401194844935	AGAGATTGGCATTCAAG
chr8	347458	347459	chr8:347459:G:A	rs17737638	G	A	.	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr8	458009	458010	chr8:458010:A:T	rs11985283	A	T	A	Sox3.mouse_HMG_3	14	1	+	1.1774288455890605	-5.20451732083785	GGTGCATTGGATTCATC
chr8	458026	458027	chr8:458027:A:G	rs10089277	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr8	458028	458029	chr8:458029:A:G	rs10089278	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr8	495790	495791	chr8:495791:G:A	rs11781389	G	A	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	622367	622368	chr8:622368:G:C	rs114773783	G	C	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr8	687231	687232	chr8:687232:C:T	chr8:687232:C:T	C	T	c	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr8	907867	907868	chr8:907868:C:T	rs55730989	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr8	907870	907871	chr8:907871:G:A	rs56122659	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr8	914407	914408	chr8:914408:T:C	rs17667487	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr8	989603	989604	chr8:989604:T:C	rs11784100	T	C	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr8	989605	989606	chr8:989606:T:C	rs11784101	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr8	1001784	1001785	chr8:1001785:A:G	rs4236863	A	G	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr8	1187160	1187161	chr8:1187161:T:C	rs61384416	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr8	1346735	1346736	chr8:1346736:A:C	rs7838343	A	C	-	Sox3.mouse_HMG_3	4	1	+	3.446021801524695	-3.30451970659469	GCTGAATTGCACTCACG
chr8	1347436	1347437	chr8:1347437:A:G	rs13260120	A	G	-	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr8	1408002	1408003	chr8:1408003:A:G	rs34659395	A	G	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr8	1469132	1469133	chr8:1469133:C:G	rs78056050	C	G	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr8	1566003	1566004	chr8:1566004:G:C	rs2301964	G	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr8	1633268	1633269	chr8:1633269:T:G	rs7003984	T	G	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	1652300	1652301	chr8:1652301:A:G	rs9644314	A	G	a	Sox3.mouse_HMG_3	5	1	+	2.466857223343869	-4.021977698726998	AATCCATTCCATTCATT
chr8	1655753	1655754	chr8:1655754:C:T	rs10448100	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	1671440	1671441	chr8:1671441:G:C	rs62483123	G	C	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	1730090	1730091	chr8:1730091:G:T	rs12545625	G	T	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	1750744	1750745	chr8:1750745:A:G	rs4623455	A	G	A	Sox3.mouse_HMG_3	14	1	+	4.77676035775289	-1.6051858086740207	TTTTAATGATAGTCAAA
chr8	1786592	1786593	chr8:1786593:C:T	rs112439050	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	1807258	1807259	chr8:1807259:G:A	rs4875809	G	A	A	Sox3.mouse_HMG_3	13	1	-	6.095968174335598	-0.5112924361264234	GAAGAATTTTATTCACT
chr8	1886743	1886744	chr8:1886744:C:T	rs62477542	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr8	1949007	1949008	chr8:1949008:A:G	rs17064407	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr8	1978289	1978290	chr8:1978290:G:C	rs9657382	G	C	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr8	2021835	2021836	chr8:2021836:C:A	rs576268517	C	A	c	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr8	2021871	2021872	chr8:2021872:C:G	rs13278081	C	G	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr8	2021879	2021880	chr8:2021880:G:A	rs150127679	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr8	2063300	2063301	chr8:2063301:T:C	rs112930195	T	C	t	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	2097051	2097052	chr8:2097052:T:A	rs73657725	T	A	T	Sox3.mouse_HMG_3	15	1	+	3.7592832812891435	1.4954738170523227	GATGAATGACCCTCATC
chr8	2097066	2097067	chr8:2097067:C:A	rs7464275	C	A	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr8	2161879	2161880	chr8:2161880:T:C	rs62501424	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr8	2163178	2163179	chr8:2163179:T:A	rs6558614	T	A	A	Sox3.mouse_HMG_3	10	1	-	1.867712997435437	-4.883338487746032	AATGAGGTCTATTCATC
chr8	2198935	2198936	chr8:2198936:A:G	rs80120477	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr8	2237320	2237321	chr8:2237321:T:A	rs62502201	T	A	T	Sox3.mouse_HMG_3	5	1	-	1.7938786988082496	-4.813561965670462	TATGAATGTGAGTGAGG
chr8	2352884	2352885	chr8:2352885:C:G	rs766331329	C	G	-	Sox3.mouse_HMG_3	8	1	+	7.32113383650457	7.763916505182502	AATGAATTCCATTCCAT
chr8	2657994	2657995	chr8:2657995:T:C	rs76048732	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr8	2662871	2662872	chr8:2662872:G:A	rs4075491	G	A	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr8	2668112	2668113	chr8:2668113:G:A	rs7822825	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	2698250	2698251	chr8:2698251:C:T	rs73490685	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr8	2920291	2920292	chr8:2920292:T:C	rs17078893	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	2953002	2953003	chr8:2953003:G:C	rs668789	G	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr8	3050404	3050405	chr8:3050405:T:C	rs62490542	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr8	3309565	3309566	chr8:3309566:G:T	rs76725680	G	T	G	Sox3.mouse_HMG_3	7	1	+	0.6763768496561007	-0.1736560925739703	TGTGAAAGACAGTCTTA
chr8	3334724	3334725	chr8:3334725:C:T	rs7843496	C	T	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr8	3763020	3763021	chr8:3763021:T:C	rs56027527	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr8	3866085	3866086	chr8:3866086:C:A	rs13249429	C	A	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	3909332	3909333	chr8:3909333:T:C	rs117153547	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr8	3909353	3909354	chr8:3909354:C:G	rs3877992	C	G	C	Sox3.mouse_HMG_3	15	1	-	2.0282405883865673	0.4364379877647404	GACGAATGTGAGTCAGA
chr8	3909357	3909358	chr8:3909358:C:G	rs2688318	C	G	G	Sox3.mouse_HMG_3	11	1	-	2.0282405883865673	-2.6219341374195704	GACGAATGTGAGTCAGA
chr8	4191887	4191888	chr8:4191888:A:G	rs710261	A	G	G	Sox3.mouse_HMG_3	7	1	-	4.705287062033876	-0.6981241179434428	TTTGAATTGTTGTCAAA
chr8	4227447	4227448	chr8:4227448:G:T	rs1700055	G	T	T	Sox3.mouse_HMG_3	7	1	+	4.957416078641745	4.1073831364116735	AGTGTATGACATTCAGA
chr8	4331571	4331572	chr8:4331572:G:A	rs117621302	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr8	4386704	4386705	chr8:4386705:C:G	rs56718022	C	G	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr8	4527952	4527953	chr8:4527953:C:G	rs11997934	C	G	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr8	4594969	4594970	chr8:4594970:T:G	rs17070718	T	G	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr8	4614709	4614710	chr8:4614710:G:C	rs2617109	G	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr8	4625038	4625039	chr8:4625039:C:A	rs1982628	C	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr8	4900427	4900428	chr8:4900428:A:G	rs4875123	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr8	5129779	5129780	chr8:5129780:A:G	rs17435605	A	G	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr8	5145015	5145016	chr8:5145016:G:C	rs1454279	G	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr8	5173429	5173430	chr8:5173430:T:C	rs35525317	T	C	T	Sox3.mouse_HMG_3	0	1	+	2.719901674069838	1.2650310287329747	TATGAATTACAGTGACC
chr8	5487943	5487944	chr8:5487944:A:G	rs10093000	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr8	5532309	5532310	chr8:5532310:C:T	rs73180333	C	T	C	Sox3.mouse_HMG_3	8	1	-	3.5289754155116975	2.9058587683338843	CATGCATTGCATTAATA
chr8	5660746	5660747	chr8:5660747:G:C	rs73183872	G	C	G	Sox3.mouse_HMG_3	12	1	-	1.524526552312585	1.3363052733914416	TGTGAATGGCTGCCATG
chr8	5760800	5760801	chr8:5760801:A:C	rs75757730	A	C	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	6025298	6025299	chr8:6025299:C:A	rs2700749	C	A	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr8	6025357	6025358	chr8:6025358:T:C	rs28758727	T	C	T	Sox3.mouse_HMG_3	8	1	-	1.3726996254441333	1.9958162726219473	GAAGAATTACATGCAAC
chr8	6026391	6026392	chr8:6026392:A:C	rs2700752	A	C	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr8	6213331	6213332	chr8:6213332:A:C	rs36129144	A	C	A	Sox3.mouse_HMG_3	6	1	-	5.933493536340155	-0.8175579488413167	GCTGAATGTCATCCAAG
chr8	6306036	6306037	chr8:6306037:T:C	rs12541032	T	C	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr8	6306047	6306048	chr8:6306048:A:T	rs12550393	A	T	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	6306084	6306085	chr8:6306085:A:T	rs76958047	A	T	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr8	6344861	6344862	chr8:6344862:G:A	rs2920650	G	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr8	6429211	6429212	chr8:6429212:A:G	rs2440427	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr8	6481575	6481576	chr8:6481576:C:T	rs2922815	C	T	C	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr8	6506462	6506463	chr8:6506463:C:A	rs3020210	C	A	C	Sox3.mouse_HMG_3	8	1	-	3.175849771990786	2.470947358396748	GGAGAATTGCATTAATA
chr8	6547425	6547426	chr8:6547426:C:T	rs17553089	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr8	6634976	6634977	chr8:6634977:G:A	rs3020266	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr8	6676444	6676445	chr8:6676445:G:A	rs12542460	G	A	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr8	6836529	6836530	chr8:6836530:G:C	rs73513747	G	C	g	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr8	6864293	6864294	chr8:6864294:A:C	rs145450037	A	C	A	Sox3.mouse_HMG_3	10	1	+	0.9211308278393177	-5.829920657342154	AAAGAATGGAAGTCAGT
chr8	6864304	6864305	chr8:6864305:C:G	rs2702840	C	G	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr8	7035683	7035684	chr8:7035684:C:T	rs4576447	C	T	.	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr8	7355433	7355434	chr8:7355434:G:T	rs1223566227	G	T	g	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	8258823	8258824	chr8:8258824:A:T	rs12544596	A	T	A	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr8	8345861	8345862	chr8:8345862:G:A	rs115076263	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr8	8484427	8484428	chr8:8484428:T:C	rs543191865	T	C	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr8	8517976	8517977	chr8:8517977:G:A	rs7828641	G	A	g	Sox3.mouse_HMG_3	0	1	-	1.8245119703480484	3.279382615684913	CATGATTTTTATTCTTT
chr8	8564619	8564620	chr8:8564620:G:T	rs73190521	G	T	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr8	8625176	8625177	chr8:8625177:A:G	rs1879960	A	G	G	Sox3.mouse_HMG_3	0	1	+	9.2865958364876	10.111879737633945	ATTGAATTGGATTCATG
chr8	8635234	8635235	chr8:8635235:G:C	rs7834575	G	C	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr8	8710466	8710467	chr8:8710467:C:G	rs12545771	C	G	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr8	8736736	8736737	chr8:8736737:G:A	rs575895	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr8	8736743	8736744	chr8:8736744:C:T	rs575920	C	T	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr8	8848333	8848334	chr8:8848334:G:C	rs572021577	G	C	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr8	8872631	8872632	chr8:8872632:A:G	rs11991673	A	G	G	Sox3.mouse_HMG_3	6	1	-	7.534953554874977	0.9270029133341802	CTTGAATGCTGTTCATG
chr8	8888230	8888231	chr8:8888231:A:G	rs7013902	A	G	A	Sox3.mouse_HMG_3	14	1	-	2.2748010840267154	2.2748010840267154	GTTGAATTTAATTCTTA
chr8	8925061	8925062	chr8:8925062:G:A	rs994647503	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr8	9020856	9020857	chr8:9020857:C:T	rs7008080	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	9030111	9030112	chr8:9030112:G:A	rs78090829	G	A	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr8	9055044	9055045	chr8:9055045:T:A	rs143903132	T	A	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr8	9164422	9164423	chr8:9164423:T:C	rs330945	T	C	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr8	9463745	9463746	chr8:9463746:A:G	rs75611506	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr8	9637221	9637222	chr8:9637222:G:T	rs33972793	G	T	G	Sox3.mouse_HMG_3	16	1	+	2.2476476913052483	1.0607181751002264	AAGGAATGCTTTTCAAG
chr8	10265982	10265983	chr8:10265983:C:G	rs35287467	C	G	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr8	10266358	10266359	chr8:10266359:G:C	rs13275128	G	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr8	10269158	10269159	chr8:10269159:T:G	chr8:10269159:T:G	T	G	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	10269173	10269174	chr8:10269174:G:C	rs2952182	G	C	G	Sox3.mouse_HMG_3	13	1	-	5.52018256898256	-1.0870780414794596	GATGAATTCTACTCTTG
chr8	10305849	10305850	chr8:10305850:C:G	rs17151667	C	G	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr8	10411190	10411191	chr8:10411191:G:A	rs149970225	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr8	10411225	10411226	chr8:10411226:A:G	rs1986971	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	10510450	10510451	chr8:10510451:T:A	chr8:10510451:T:A	T	A	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr8	10798743	10798744	chr8:10798744:T:G	rs12681175	T	G	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr8	10928747	10928748	chr8:10928748:T:C	rs545170446	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr8	11229432	11229433	chr8:11229433:T:C	rs2736313	T	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr8	11316024	11316025	chr8:11316025:A:G	rs76071194	A	G	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr8	11421031	11421032	chr8:11421032:A:G	rs34906655	A	G	A	Sox3.mouse_HMG_3	14	1	+	1.6283376923656514	-4.753608474061259	GGTGACTTTCATGCATG
chr8	11421032	11421033	chr8:11421033:T:C	rs141016229	T	C	T	Sox3.mouse_HMG_3	15	1	+	1.6283376923656514	-3.086055719349417	GGTGACTTTCATGCATG
chr8	11424875	11424876	chr8:11424876:G:C	rs73540421	G	C	G	Sox3.mouse_HMG_3	9	1	-	1.637970967187259	-3.7019580401873045	TATGCATGTCTTTCAGA
chr8	11793789	11793790	chr8:11793790:C:T	rs75224198	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr8	11845084	11845085	chr8:11845085:G:C	rs709821	G	C	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr8	12541500	12541501	chr8:12541501:C:T	rs2933933	C	T	.	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr8	12573213	12573214	chr8:12573214:G:A	rs4831567	G	A	.	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr8	12752444	12752445	chr8:12752445:G:C	rs12548700	G	C	G	Sox3.mouse_HMG_3	11	1	-	2.358890627692704	7.009065353498842	TCTGAATGGCACTAATG
chr8	12841172	12841173	chr8:12841173:A:G	rs17831523	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	12864729	12864730	chr8:12864730:C:G	rs73663414	C	G	C	Sox3.mouse_HMG_3	13	1	+	0.9924615862736336	-5.614799024188386	TATGAAGGGTAGTCTAT
chr8	12867177	12867178	chr8:12867178:C:G	rs4831844	C	G	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr8	12918954	12918955	chr8:12918955:C:T	rs117047189	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr8	12979827	12979828	chr8:12979828:T:C	rs73204353	T	C	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr8	13001998	13001999	chr8:13001999:A:G	rs17123247	A	G	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr8	13003448	13003449	chr8:13003449:A:T	rs138324286	A	T	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	13073053	13073054	chr8:13073054:C:G	rs13267144	C	G	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr8	13076529	13076530	chr8:13076530:T:C	rs116017230	T	C	T	Sox3.mouse_HMG_3	9	1	+	2.285824227403778	2.278187550412032	TTGGAATGATATTAATG
chr8	13150559	13150560	chr8:13150560:T:A	rs1381918688	T	A	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	13170402	13170403	chr8:13170403:G:A	rs7828964	G	A	A	Sox3.mouse_HMG_3	8	1	+	5.921692378166436	5.298575730988622	TATAAATGGCATACATT
chr8	13193165	13193166	chr8:13193166:C:T	rs7013485	C	T	T	Sox3.mouse_HMG_3	5	1	-	6.449507944295002	12.938342866365867	AATGAGTGACAGTCAAT
chr8	13222735	13222736	chr8:13222736:T:G	rs77573827	T	G	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr8	13224614	13224615	chr8:13224615:T:C	rs74541532	T	C	T	Sox3.mouse_HMG_3	7	1	+	5.382072647553971	-0.02133853242334749	GGTGAATTCTATTCTGG
chr8	13234096	13234097	chr8:13234097:A:G	rs1188287	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	13366467	13366468	chr8:13366468:G:C	rs10094334	G	C	G	Sox3.mouse_HMG_3	3	1	+	3.2529271187072553	-3.4965636169977934	TATGAGTGATATTCTAG
chr8	13386085	13386086	chr8:13386086:G:A	rs75751951	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	13472942	13472943	chr8:13472943:T:C	rs62494114	T	C	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	13472951	13472952	chr8:13472952:A:G	rs62494115	A	G	A	Sox3.mouse_HMG_3	7	1	+	4.912196219342915	11.465744934000643	CCTGAATACTAGTCATA
chr8	13498055	13498056	chr8:13498056:A:G	rs79633931	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr8	13544687	13544688	chr8:13544688:A:G	rs10503453	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr8	13548922	13548923	chr8:13548923:A:T	rs57861397	A	T	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr8	13575645	13575646	chr8:13575646:C:T	rs34517103	C	T	C	Sox3.mouse_HMG_3	14	1	-	1.2393039527248333	7.621250119151744	GATGTATTTCAGTCGTC
chr8	13739695	13739696	chr8:13739696:C:A	rs10105236	C	A	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr8	13923294	13923295	chr8:13923295:A:G	rs7819836	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	14059817	14059818	chr8:14059818:A:G	rs3915660	A	G	G	Sox3.mouse_HMG_3	14	1	+	1.6062370093552831	-4.775709157071628	TTTGGATTCCTTTCATG
chr8	14197774	14197775	chr8:14197775:C:T	rs7821005	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr8	14227191	14227192	chr8:14227192:C:G	rs111386247	C	G	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr8	14422423	14422424	chr8:14422424:C:T	rs12542288	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr8	14745317	14745318	chr8:14745318:A:C	rs17120202	A	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	14752882	14752883	chr8:14752883:T:A	rs4282	T	A	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr8	14914767	14914768	chr8:14914768:G:A	rs4831663	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr8	15207960	15207961	chr8:15207961:G:T	rs10096451	G	T	T	Sox3.mouse_HMG_3	11	1	+	6.094469043714044	7.528905144009851	GGTGAATGTCTGTCATT
chr8	15339605	15339606	chr8:15339606:A:C	rs11987383	A	C	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	15378875	15378876	chr8:15378876:C:T	rs11987472	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr8	15442687	15442688	chr8:15442688:T:G	rs17473297	T	G	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr8	15501291	15501292	chr8:15501292:A:G	rs17611665	A	G	A	Sox3.mouse_HMG_3	11	1	-	2.103008233777085	-3.98160259232486	GATGCATTTTATTTAAG
chr8	15586693	15586694	chr8:15586694:T:C	rs17657878	T	C	T	Sox3.mouse_HMG_3	6	1	+	4.927618557587883	-1.6803320839529148	ACTGAATGCTATTGAAA
chr8	15849978	15849979	chr8:15849979:C:G	rs12675879	C	G	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr8	15849984	15849985	chr8:15849985:G:A	rs2604321	G	A	g	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr8	15910449	15910450	chr8:15910450:G:A	rs13270925	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr8	15984863	15984864	chr8:15984864:C:T	rs17614414	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	16186157	16186158	chr8:16186158:C:T	rs435815	C	T	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr8	16518181	16518182	chr8:16518182:G:A	rs966009550	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr8	16553250	16553251	chr8:16553251:A:C	rs58016571	A	C	A	Sox3.mouse_HMG_3	9	1	-	3.3966751225993876	-1.950890561766923	CAGGAATGATTTTCATA
chr8	16716691	16716692	chr8:16716692:A:G	rs11996500	A	G	A	Sox3.mouse_HMG_3	13	1	-	3.7886548575820864	10.395915468044109	GATGAATTCCAGATATA
chr8	16831872	16831873	chr8:16831873:A:G	rs13253086	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr8	16831881	16831882	chr8:16831882:G:A	rs117385396	G	A	G	Sox3.mouse_HMG_3	16	1	-	3.2251383450813225	4.092065084553601	GTTGATTTCCATTCAGC
chr8	16907163	16907164	chr8:16907164:T:C	rs923854	T	C	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	16989316	16989317	chr8:16989317:T:C	rs1721087	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	17226494	17226495	chr8:17226495:A:G	rs75199608	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr8	17255839	17255840	chr8:17255840:C:A	rs11779174	C	A	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr8	17373839	17373840	chr8:17373840:A:G	rs73208980	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr8	17446831	17446832	chr8:17446832:G:C	rs11203860	G	C	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr8	17593317	17593318	chr8:17593318:A:G	rs56041459	A	G	A	Sox3.mouse_HMG_3	14	1	+	1.0235757329617061	-5.358370433465205	TTTGAAGGCCAGGCATG
chr8	17596675	17596676	chr8:17596676:G:A	rs2246491	G	A	A	Sox3.mouse_HMG_3	13	1	-	2.550239325707272	-4.0570212847547475	AATGAACACTATTCAAA
chr8	17598595	17598596	chr8:17598596:A:T	rs2720480	A	T	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	17614404	17614405	chr8:17614405:G:A	rs79564393	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr8	17678084	17678085	chr8:17678085:T:C	rs11203895	T	C	T	Sox3.mouse_HMG_3	1	1	-	3.7208070594742315	0.6206771230369403	TATGGATGGTATTTAAA
chr8	17683770	17683771	chr8:17683771:G:C	rs150012363	G	C	G	Sox3.mouse_HMG_3	15	1	+	4.96252592045413	3.3707233198323028	AATGAATTTTAGCCAGT
chr8	17707181	17707182	chr8:17707182:T:G	rs78978219	T	G	G	Sox3.mouse_HMG_3	8	1	+	1.8246425702241598	2.5295449838181976	GGTGATTTTCAGTCACA
chr8	17721526	17721527	chr8:17721527:G:C	rs75913039	G	C	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr8	17808085	17808086	chr8:17808086:T:C	rs17125491	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	17880468	17880469	chr8:17880469:G:T	rs2517317	G	T	G	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr8	17880493	17880494	chr8:17880494:G:A	rs2517318	G	A	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr8	17910754	17910755	chr8:17910755:G:A	rs411173	G	A	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr8	17922018	17922019	chr8:17922019:C:T	rs114895009	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr8	17950218	17950219	chr8:17950219:G:A	rs17126008	G	A	g	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr8	18073581	18073582	chr8:18073582:C:T	rs3753117	C	T	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr8	18135014	18135015	chr8:18135015:A:C	rs2078709	A	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr8	18360304	18360305	chr8:18360305:T:C	rs971770	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr8	18448521	18448522	chr8:18448522:T:G	rs13277954	T	G	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	18658391	18658392	chr8:18658392:A:G	rs11990818	A	G	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr8	18814818	18814819	chr8:18814819:T:C	rs996056993	T	C	t	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr8	19011259	19011260	chr8:19011260:A:G	rs117839861	A	G	A	Sox3.mouse_HMG_3	12	1	-	0.5988788655228776	-5.5939747018778885	GGTTAATTGCAGTCTTG
chr8	19077439	19077440	chr8:19077440:A:G	rs4921989	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr8	19097658	19097659	chr8:19097659:G:T	rs7014714	G	T	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr8	19127871	19127872	chr8:19127872:C:T	rs333041	C	T	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr8	19129836	19129837	chr8:19129837:T:C	rs9644619	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr8	19269525	19269526	chr8:19269526:G:A	rs2943427	G	A	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	19271856	19271857	chr8:19271857:C:G	rs2683280	C	G	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr8	19287520	19287521	chr8:19287521:T:C	rs1193293	T	C	G	Sox3.mouse_HMG_3	14	1	-	-0.032061100765420125	-6.414007267192332	GAAGGAAGCCATTCATG
chr8	19460497	19460498	chr8:19460498:G:A	rs186205299	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr8	19530537	19530538	chr8:19530538:T:A	rs73212597	T	A	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr8	19585003	19585004	chr8:19585004:A:C	rs6586848	A	C	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr8	19664998	19664999	chr8:19664999:A:G	rs74451818	A	G	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	19679096	19679097	chr8:19679097:A:C	rs73216622	A	C	A	Sox3.mouse_HMG_3	0	1	-	2.539819470425866	2.80874032422562	TATGAAAGTTTTTCAAG
chr8	19810918	19810919	chr8:19810919:A:T	rs59565447	A	T	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	19871074	19871075	chr8:19871075:T:C	rs7003579	T	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr8	19881731	19881732	chr8:19881732:G:T	rs17410407	G	T	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr8	20052107	20052108	chr8:20052108:T:C	rs80118115	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr8	20073813	20073814	chr8:20073814:T:C	rs76840058	T	C	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	20086879	20086880	chr8:20086880:G:C	rs181525253	G	C	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr8	20405896	20405897	chr8:20405897:G:A	rs1016646	G	A	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr8	20961681	20961682	chr8:20961682:T:C	rs117696102	T	C	T	Sox3.mouse_HMG_3	6	1	+	6.236992534253254	-0.37095810728754264	CTAGAATGGTAGTCATT
chr8	21589906	21589907	chr8:21589907:A:G	rs7012580	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr8	21599724	21599725	chr8:21599725:T:A	rs12680600	T	A	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr8	21684448	21684449	chr8:21684449:A:G	rs78593859	A	G	A	Sox3.mouse_HMG_3	16	1	-	0.4812078568103221	-0.38571888266195686	TGTGACTGGCAGCCATT
chr8	21684455	21684456	chr8:21684456:G:T	rs115545155	G	T	G	Sox3.mouse_HMG_3	9	1	-	0.4812078568103221	-5.573010767697998	TGTGACTGGCAGCCATT
chr8	21711591	21711592	chr8:21711592:G:A	rs4237073	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr8	21752829	21752830	chr8:21752830:G:A	rs73669545	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr8	21814791	21814792	chr8:21814792:C:T	rs17427894	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr8	21861874	21861875	chr8:21861875:C:T	rs12542213	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr8	22092151	22092152	chr8:22092152:T:C	rs6557791	T	C	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	22371314	22371315	chr8:22371315:C:T	rs17060812	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	22448285	22448286	chr8:22448286:G:C	rs7843761	G	C	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr8	22461702	22461703	chr8:22461703:G:A	rs6981171	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr8	22559422	22559423	chr8:22559423:G:A	rs117505865	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr8	22559437	22559438	chr8:22559438:C:A	chr8:22559438:C:A	C	A	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr8	22638452	22638453	chr8:22638453:T:C	rs4872526	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr8	22917713	22917714	chr8:22917714:T:C	rs2457423	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr8	23008618	23008619	chr8:23008619:C:A	rs111462225	C	A	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr8	23287959	23287960	chr8:23287960:G:A	rs765404496	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr8	23287966	23287967	chr8:23287967:G:T	rs182985388	G	T	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr8	23343974	23343975	chr8:23343975:C:G	rs1044067801	C	G	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr8	23371449	23371450	chr8:23371450:T:C	rs11135729	T	C	T	Sox3.mouse_HMG_3	14	1	-	3.1297355267848364	-3.2522106396420742	CATGCATTTTAATCATA
chr8	23371476	23371477	chr8:23371477:G:C	rs11135730	G	C	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr8	23441869	23441870	chr8:23441870:G:A	rs148672547	G	A	G	Sox3.mouse_HMG_3	10	1	+	3.903075736375776	10.511026377916574	GTTGAATTACGTTCAAC
chr8	23502317	23502318	chr8:23502318:G:T	rs13250356	G	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr8	23542077	23542078	chr8:23542078:T:A	rs113448535	T	A	T	Sox3.mouse_HMG_3	7	1	+	6.185742323951201	0.4822265515235453	ACTGAATTACAGTCAGC
chr8	23542097	23542098	chr8:23542098:G:C	rs112385076	G	C	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr8	23559577	23559578	chr8:23559578:G:A	rs2004645	G	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr8	23584718	23584719	chr8:23584719:A:G	rs9657279	A	G	G	Sox3.mouse_HMG_3	7	1	-	3.361462200881947	-2.0419489790953715	AATGGATTGCAGTCCTA
chr8	24339856	24339857	chr8:24339857:A:G	rs11998324	A	G	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr8	24570834	24570835	chr8:24570835:A:T	rs9314287	A	T	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr8	24634163	24634164	chr8:24634164:G:A	rs2720732	G	A	G	Sox3.mouse_HMG_3	9	1	-	4.20976500670324	4.217401683694986	TATGTATTGCAGTCACT
chr8	24706899	24706900	chr8:24706900:G:A	rs17052420	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	24999090	24999091	chr8:24999091:C:T	rs148149383	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr8	25050902	25050903	chr8:25050903:T:C	rs756221	T	C	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr8	25050917	25050918	chr8:25050918:T:C	rs62501475	T	C	T	Sox3.mouse_HMG_3	6	1	+	4.4356277515692755	-2.172322889971521	TCTGAATTGCATTCTGA
chr8	25099178	25099179	chr8:25099179:A:C	rs17053114	A	C	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr8	25203427	25203428	chr8:25203428:T:G	rs77583454	T	G	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr8	25285035	25285036	chr8:25285036:G:A	rs2941596	G	A	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr8	25438591	25438592	chr8:25438592:T:C	rs377218221	T	C	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr8	25523712	25523713	chr8:25523713:A:G	rs4872324	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr8	25688387	25688388	chr8:25688388:A:C	rs73223951	A	C	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr8	26186121	26186122	chr8:26186122:T:C	rs4623439	T	C	T	Sox3.mouse_HMG_3	1	1	-	2.237894756029227	-0.862235180408063	TATGAATTTGAGTCCTC
chr8	26186294	26186295	chr8:26186295:C:T	rs7843865	C	T	T	Sox3.mouse_HMG_3	14	1	+	1.7219652337267874	1.7219652337267874	GCTGAATTGTATACCTA
chr8	26280080	26280081	chr8:26280081:A:C	rs34220779	A	C	A	Sox3.mouse_HMG_3	1	1	+	2.34376669995173	-1.8330928139041642	AATGAACTGCATGCAAG
chr8	26287215	26287216	chr8:26287216:T:A	rs34756340	T	A	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr8	26350692	26350693	chr8:26350693:G:C	rs10866848	G	C	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	26418874	26418875	chr8:26418875:G:A	rs570748476	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr8	26422348	26422349	chr8:26422349:C:T	rs17055205	C	T	C	Sox3.mouse_HMG_3	13	1	-	7.125910302287459	7.350534238772103	TTTGAATGGCATTGAAA
chr8	26588530	26588531	chr8:26588531:C:T	rs115849244	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr8	26612785	26612786	chr8:26612786:A:G	rs936469316	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr8	26892714	26892715	chr8:26892715:C:T	rs7006523	C	T	t	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr8	27007450	27007451	chr8:27007451:C:T	rs9314332	C	T	t	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr8	27016636	27016637	chr8:27016637:A:T	rs2322409	A	T	a	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr8	27459819	27459820	chr8:27459820:A:G	rs2280375	A	G	G	Sox3.mouse_HMG_3	14	1	+	0.0019258000360049543	-6.380020366390905	GATGGATGGGAGACATG
chr8	27545259	27545260	chr8:27545260:G:A	rs7341557	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr8	27650767	27650768	chr8:27650768:A:G	rs17057494	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr8	27853859	27853860	chr8:27853860:A:G	rs4732774	A	G	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr8	27883005	27883006	chr8:27883006:C:T	rs10088835	C	T	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr8	27957391	27957392	chr8:27957392:C:T	rs180712457	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	28021478	28021479	chr8:28021479:T:C	rs2100365	T	C	T	Sox3.mouse_HMG_3	15	1	+	5.935484459959076	1.2210910482440078	ACTGAATTTTTTTCATA
chr8	28336970	28336971	chr8:28336971:A:G	rs2645715	A	G	G	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr8	28445195	28445196	chr8:28445196:G:C	rs1060412	G	C	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr8	28498189	28498190	chr8:28498190:G:A	rs11775139	G	A	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr8	28660616	28660617	chr8:28660617:C:G	rs189815	C	G	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	28848462	28848463	chr8:28848463:T:A	rs9644148	T	A	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	28905280	28905281	chr8:28905281:A:G	rs36118625	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr8	29062848	29062849	chr8:29062849:T:G	rs116634247	T	G	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr8	29245700	29245701	chr8:29245701:A:G	rs35905041	A	G	a	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr8	29319757	29319758	chr8:29319758:A:C	rs590939	A	C	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr8	29445210	29445211	chr8:29445211:A:C	rs4732946	A	C	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr8	29682819	29682820	chr8:29682820:G:T	rs77970488	G	T	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr8	29685167	29685168	chr8:29685168:C:T	rs78813261	C	T	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr8	29829404	29829405	chr8:29829405:G:A	rs13255271	G	A	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr8	29886033	29886034	chr8:29886034:A:C	rs534045766	A	C	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr8	30279310	30279311	chr8:30279311:G:A	rs10113031	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr8	30339677	30339678	chr8:30339678:G:A	rs75961862	G	A	.	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr8	30671788	30671789	chr8:30671789:A:C	rs6994378	A	C	A	Sox3.mouse_HMG_3	14	1	-	2.0265766171114725	2.0265766171114725	TTTGAATTGGAGTCTTG
chr8	30711251	30711252	chr8:30711252:G:A	rs8190937	G	A	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	30804552	30804553	chr8:30804553:G:A	rs78850094	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr8	30804556	30804557	chr8:30804557:T:C	rs59755735	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr8	31194835	31194836	chr8:31194836:C:A	rs73230790	C	A	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr8	31849378	31849379	chr8:31849379:G:A	rs1481622	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr8	31945941	31945942	chr8:31945942:A:G	rs327359	A	G	A	Sox3.mouse_HMG_3	0	1	-	1.5714404341999006	0.11656978886303615	TATTAATGATCTTCAGA
chr8	31993818	31993819	chr8:31993819:G:T	rs1462874	G	T	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr8	32079035	32079036	chr8:32079036:T:G	rs16878764	T	G	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	32331886	32331887	chr8:32331887:T:C	rs147881091	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr8	32348857	32348858	chr8:32348858:G:A	rs9297189	G	A	A	Sox3.mouse_HMG_3	9	1	-	2.216854119515479	2.224490796507225	TATGAATCACCTTCAGA
chr8	32348881	32348882	chr8:32348882:A:G	rs10503911	A	G	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	32549475	32549476	chr8:32549476:T:C	rs4733130	T	C	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	32582445	32582446	chr8:32582446:C:T	rs2439296	C	T	C	Sox3.mouse_HMG_3	16	1	-	4.012771895850412	3.9768314393978867	AATTAATTAAATTCATG
chr8	32583577	32583578	chr8:32583578:A:G	rs66877262	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr8	32589363	32589364	chr8:32589364:G:A	rs2439292	G	A	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr8	32715464	32715465	chr8:32715465:C:A	rs2976525	C	A	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr8	32925305	32925306	chr8:32925306:A:G	rs137997942	A	G	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr8	32983226	32983227	chr8:32983227:G:C	rs150827819	G	C	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr8	33202309	33202310	chr8:33202310:T:G	rs7815128	T	G	G	Sox3.mouse_HMG_3	5	1	-	4.581811765377532	-2.0256288991011786	AAGGAATGTTATTAATA
chr8	33202476	33202477	chr8:33202477:G:A	rs10954882	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr8	33202484	33202485	chr8:33202485:A:C	rs10954883	A	C	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr8	33214141	33214142	chr8:33214142:C:T	rs137901730	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr8	33243312	33243313	chr8:33243313:T:C	rs73594968	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr8	33249050	33249051	chr8:33249051:G:A	rs6468149	G	A	A	Sox3.mouse_HMG_3	6	1	-	2.9062244746572805	9.514175116198079	AATAAACGGTATTCAGA
chr8	33793771	33793772	chr8:33793772:T:C	rs4733455	T	C	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	33806274	33806275	chr8:33806275:T:C	rs4733459	T	C	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr8	33844188	33844189	chr8:33844189:T:C	rs17700823	T	C	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr8	33972173	33972174	chr8:33972174:C:T	rs58955533	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	34424268	34424269	chr8:34424269:A:G	rs2609618	A	G	G	Sox3.mouse_HMG_3	10	1	+	1.3663570088023367	-5.241593632738462	TGTGATCTCTATTCATA
chr8	34770186	34770187	chr8:34770187:T:G	rs1949719	T	G	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr8	35120120	35120121	chr8:35120121:C:A	rs2218870	C	A	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr8	35542463	35542464	chr8:35542464:A:C	rs12550037	A	C	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr8	35784423	35784424	chr8:35784424:A:G	rs7836205	A	G	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	36271787	36271788	chr8:36271788:G:A	rs743287	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr8	36571956	36571957	chr8:36571957:A:T	rs72612124	A	T	A	Sox3.mouse_HMG_3	16	1	+	5.935302176607649	4.784313116855152	TGTGAATTCTATTAAAA
chr8	36880687	36880688	chr8:36880688:C:T	rs7010167	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr8	37045860	37045861	chr8:37045861:A:G	rs2970709	A	G	G	Sox3.mouse_HMG_3	5	1	+	3.336372824672897	-3.152462097397967	TAAGAATTTCACTCAAA
chr8	37232857	37232858	chr8:37232858:G:A	rs10504002	G	A	A	Sox3.mouse_HMG_3	2	1	-	2.991008879658159	9.596887997889093	CACGAATGATAGTCACT
chr8	37301827	37301828	chr8:37301828:T:C	rs364583	T	C	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr8	37746924	37746925	chr8:37746925:A:G	rs138288797	A	G	A	Sox3.mouse_HMG_3	9	1	-	3.2526327258823624	3.2449960488906164	CGTGAATTATATTTAGG
chr8	38184651	38184652	chr8:38184652:C:T	chr8:38184652:C:T	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	38205716	38205717	chr8:38205717:C:A	rs7836805	C	A	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr8	38205727	38205728	chr8:38205728:A:C	rs11779210	A	C	A	Sox3.mouse_HMG_3	11	1	-	1.922824611618552	0.48838851132274486	AAAGAATTCCATGCAGG
chr8	38528395	38528396	chr8:38528396:C:T	rs1378332	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr8	38722588	38722589	chr8:38722589:T:C	rs73609073	T	C	C	Sox3.mouse_HMG_3	4	1	-	1.5090934912992822	-4.873723236694786	GTTGAAAGGCAGTGATG
chr8	38840130	38840131	chr8:38840131:T:C	rs13262797	T	C	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr8	38969273	38969274	chr8:38969274:T:G	rs9987126	T	G	G	Sox3.mouse_HMG_3	16	1	-	6.488247498706821	4.4703316994820455	AATGAAATACAGTCAAA
chr8	39442483	39442484	chr8:39442484:G:A	rs75103195	G	A	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr8	39534233	39534234	chr8:39534234:G:A	rs1281666918	G	A	.	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr8	39615530	39615531	chr8:39615531:A:G	rs13263586	A	G	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr8	40071069	40071070	chr8:40071070:T:C	rs7821900	T	C	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	40087687	40087688	chr8:40087688:T:C	rs60215074	T	C	T	Sox3.mouse_HMG_3	15	1	+	4.161989336364421	-0.5524040753506472	CATGAATGACATGCCTG
chr8	40201120	40201121	chr8:40201121:A:G	rs6474233	A	G	A	Sox3.mouse_HMG_3	2	1	-	1.9746017530793902	-4.63127736515154	AATGAATTCTCTTCTTC
chr8	40322712	40322713	chr8:40322713:G:A	rs1882920	G	A	g	Sox3.mouse_HMG_3	0	1	-	4.350273708086988	5.805144353423854	CGTGAATTCCTTTCATC
chr8	40373493	40373494	chr8:40373494:C:T	rs76022435	C	T	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr8	40482081	40482082	chr8:40482082:C:G	rs61234540	C	G	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr8	40502134	40502135	chr8:40502135:A:G	rs59743358	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr8	40517723	40517724	chr8:40517724:G:A	rs2565092	G	A	G	Sox3.mouse_HMG_3	7	1	+	2.3184564081288563	-4.235092306528872	GATGTATGATGTTCAGG
chr8	40519388	40519389	chr8:40519389:A:G	rs2565097	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	40995110	40995111	chr8:40995111:C:T	rs67995305	C	T	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr8	41077814	41077815	chr8:41077815:G:A	rs75798600	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr8	41116544	41116545	chr8:41116545:T:C	rs12549490	T	C	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr8	41158881	41158882	chr8:41158882:C:G	rs528226613	C	G	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	41196645	41196646	chr8:41196646:T:A	rs72641826	T	A	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr8	41196652	41196653	chr8:41196653:G:A	rs1017593112	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	41197218	41197219	chr8:41197219:C:T	rs4527854	C	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr8	41235630	41235631	chr8:41235631:C:A	rs9785096	C	A	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr8	41543476	41543477	chr8:41543477:A:C	rs11780755	A	C	A	Sox3.mouse_HMG_3	7	1	-	1.7069140723464438	2.556947014576515	CATTAATTTCATCCATT
chr8	41764384	41764385	chr8:41764385:C:T	rs11997827	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr8	41830528	41830529	chr8:41830529:T:C	rs1362890	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr8	41906776	41906777	chr8:41906777:C:A	rs112097880	C	A	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr8	41906779	41906780	chr8:41906780:T:G	rs72640376	T	G	T	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr8	42005342	42005343	chr8:42005343:C:T	rs142254138	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	42050801	42050802	chr8:42050802:G:A	rs186091045	G	A	G	Sox3.mouse_HMG_3	5	1	+	3.998923996816755	10.48775891888762	AATGAGTGACAGTCACT
chr8	42094388	42094389	chr8:42094389:T:C	rs145179278	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr8	42269971	42269972	chr8:42269972:C:A	rs181439700	C	A	C	Sox3.mouse_HMG_3	0	1	-	5.3938091541046465	5.124888300304891	GTTGAATTGCATTTAAT
chr8	42555644	42555645	chr8:42555645:T:G	rs7815987	T	G	T	Sox3.mouse_HMG_3	10	1	-	0.7734753601248606	-5.9775761250566095	GCTGAATGCCACTTATT
chr8	42660657	42660658	chr8:42660658:A:G	rs1868859	A	G	a	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr8	43199378	43199379	chr8:43199379:C:G	rs76750342	C	G	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr8	43199409	43199410	chr8:43199410:T:C	rs1126058	T	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr8	43254426	43254427	chr8:43254427:A:G	rs1021045	A	G	.	Sox3.mouse_HMG_3	1	1	+	3.3986996611218165	0.2985697246845237	GACGAATTACATTTATT
chr8	43688494	43688495	chr8:43688495:T:C	rs191419302	T	C	.	Sox3.mouse_HMG_3	12	1	+	0.6985878617217411	-5.494265705679026	TATGAAAACCAGTCAGG
chr8	46018564	46018565	chr8:46018565:G:A	rs11778237	G	A	.	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr8	46018582	46018583	chr8:46018583:C:T	rs11996894	C	T	.	Sox3.mouse_HMG_3	15	1	-	3.3140329030099034	4.172814249866324	CCTGAATTGCACTCAGG
chr8	46403889	46403890	chr8:46403890:G:A	rs370650395	G	A	.	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr8	46403929	46403930	chr8:46403930:G:A	rs117198077	G	A	.	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr8	47472817	47472818	chr8:47472818:A:G	rs11989844	A	G	a	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr8	48668942	48668943	chr8:48668943:G:A	rs9694357	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr8	48668960	48668961	chr8:48668961:G:A	rs186572513	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr8	48777924	48777925	chr8:48777925:C:T	rs16938753	C	T	C	Sox3.mouse_HMG_3	4	1	-	0.7534513032889651	7.136268031283032	GGTGGAGTGCAGTCATG
chr8	48934074	48934075	chr8:48934075:G:A	rs17714522	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr8	49081136	49081137	chr8:49081137:A:T	rs10435612	A	T	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr8	49955809	49955810	chr8:49955810:C:T	rs2385697	C	T	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr8	50176183	50176184	chr8:50176184:C:T	rs11775978	C	T	C	Sox3.mouse_HMG_3	8	1	-	1.3682701347289934	0.7451534875511803	GACCAATTGCAGTCAAG
chr8	51046998	51046999	chr8:51046999:T:C	rs6473574	T	C	T	Sox3.mouse_HMG_3	16	1	-	2.3166212853813093	2.352561741833835	AATGAAGGTTATTCCAA
chr8	51240369	51240370	chr8:51240370:A:T	rs2392833	A	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	51240422	51240423	chr8:51240423:C:T	rs2893637	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr8	51344602	51344603	chr8:51344603:T:A	rs1236097	T	A	A	Sox3.mouse_HMG_3	0	1	-	1.2180267356526182	1.77438978299921	AGTGAAATCCAATCATG
chr8	51399645	51399646	chr8:51399646:G:A	rs73579673	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr8	51667915	51667916	chr8:51667916:T:A	chr8:51667916:T:A	T	A	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr8	51935595	51935596	chr8:51935596:A:C	rs16916974	A	C	A	Sox3.mouse_HMG_3	5	1	+	2.0578093956361254	-4.549631268842586	GATGAATGTTTTTGAGA
chr8	52216068	52216069	chr8:52216069:A:G	rs11988076	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr8	52230384	52230385	chr8:52230385:T:C	rs17221900	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	52463725	52463726	chr8:52463726:A:G	rs2582636	A	G	G	Sox3.mouse_HMG_3	6	1	-	-0.39636677393502073	-7.004317415475818	GGTGAGTGGCAGGCAAG
chr8	52790042	52790043	chr8:52790043:C:T	rs12679581	C	T	C	Sox3.mouse_HMG_3	13	1	+	3.060103407919663	-3.5471572025423566	AATAAATGTTGTTCAAA
chr8	52819552	52819553	chr8:52819553:T:C	rs17339378	T	C	T	Sox3.mouse_HMG_3	12	1	+	3.7241059234412632	-2.468747643959503	GATGCATGGTTTTCATC
chr8	52855550	52855551	chr8:52855551:G:A	rs7844657	G	A	G	Sox3.mouse_HMG_3	13	1	+	7.95251063356892	8.177134570053564	TTTGAATTACATTGATG
chr8	53104671	53104672	chr8:53104672:C:G	rs4532612	C	G	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr8	53142757	53142758	chr8:53142758:C:T	rs2588052	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr8	53228387	53228388	chr8:53228388:C:T	rs3802279	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr8	53229596	53229597	chr8:53229597:T:C	rs702764	T	C	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr8	53296565	53296566	chr8:53296566:C:A	rs7001756	C	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr8	53296568	53296569	chr8:53296569:A:G	rs6983218	A	G	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr8	54628889	54628890	chr8:54628890:G:A	rs446227	G	A	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr8	55155831	55155832	chr8:55155832:A:G	rs12156412	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr8	55667129	55667130	chr8:55667130:A:G	rs28885743	A	G	A	Sox3.mouse_HMG_3	9	1	-	8.408712111781526	8.401075434789778	GTTGAACTCTATTCATG
chr8	55841042	55841043	chr8:55841043:T:C	rs183875319	T	C	T	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr8	55891629	55891630	chr8:55891630:C:T	rs13277429	C	T	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr8	56067982	56067983	chr8:56067983:G:A	rs2976009	G	A	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	56464706	56464707	chr8:56464707:A:G	rs1581130	A	G	A	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr8	56641008	56641009	chr8:56641009:C:A	rs7822985	C	A	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr8	57052717	57052718	chr8:57052718:C:G	rs1442122	C	G	.	Sox3.mouse_HMG_3	7	1	-	3.313878407366426	-2.939565714840964	CCTTAATGGTATTCAGA
chr8	57273020	57273021	chr8:57273021:G:A	rs67630725	G	A	.	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr8	57495574	57495575	chr8:57495575:G:A	rs6998492	G	A	G	Sox3.mouse_HMG_3	3	1	+	1.95824289833534	-3.823321989193891	AATGAATGAAAGACAAG
chr8	57844732	57844733	chr8:57844733:A:G	rs16922632	A	G	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr8	57913107	57913108	chr8:57913108:A:C	rs73246664	A	C	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr8	57999373	57999374	chr8:57999374:A:G	rs7010621	A	G	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr8	58070431	58070432	chr8:58070432:G:T	rs7015049	G	T	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	58086881	58086882	chr8:58086882:G:A	rs114106402	G	A	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr8	58217992	58217993	chr8:58217993:G:A	rs10094616	G	A	A	Sox3.mouse_HMG_3	8	1	-	2.5768596197974443	2.3147398748813384	TATAAAAGCCATTCAAT
chr8	58218012	58218013	chr8:58218013:G:C	rs10094627	G	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr8	58283575	58283576	chr8:58283576:A:G	rs4475466	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	58322205	58322206	chr8:58322206:C:T	rs2925655	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	58339116	58339117	chr8:58339117:A:G	rs2925662	A	G	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr8	58351839	58351840	chr8:58351840:C:T	rs34005877	C	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr8	58380265	58380266	chr8:58380266:T:C	rs2326074	T	C	c	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	58380269	58380270	chr8:58380270:G:A	rs2875834	G	A	a	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr8	58618971	58618972	chr8:58618972:C:G	rs7011066	C	G	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr8	58830618	58830619	chr8:58830619:T:C	rs10099884	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	58856397	58856398	chr8:58856398:C:T	rs60665035	C	T	T	Sox3.mouse_HMG_3	14	1	+	1.8462173895848364	1.8462173895848364	GTTAAATGGTATTCCAA
chr8	59017704	59017705	chr8:59017705:G:T	rs10504277	G	T	G	Sox3.mouse_HMG_3	9	1	-	4.980308985313136	-1.0739096391951817	GGTGAATTGCAGTTAAA
chr8	59066692	59066693	chr8:59066693:A:G	rs443245	A	G	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr8	59694680	59694681	chr8:59694681:A:T	rs149387622	A	T	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr8	59694869	59694870	chr8:59694870:G:A	rs115057715	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr8	59839822	59839823	chr8:59839823:T:C	rs17269617	T	C	T	Sox3.mouse_HMG_3	11	1	+	6.5598756142449774	0.47526478814303186	GGTGAATGTCATTTAAA
chr8	59851102	59851103	chr8:59851103:T:G	rs9643515	T	G	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	59899019	59899020	chr8:59899020:C:T	rs549822070	C	T	c	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr8	59899020	59899021	chr8:59899021:G:A	rs55827533	G	A	a	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr8	60396638	60396639	chr8:60396639:A:G	rs10504312	A	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr8	60396886	60396887	chr8:60396887:C:G	rs78324711	C	G	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr8	60396892	60396893	chr8:60396893:C:A	rs10957135	C	A	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr8	60396927	60396928	chr8:60396928:G:T	rs116853648	G	T	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr8	60770199	60770200	chr8:60770200:T:A	rs187240468	T	A	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr8	60770203	60770204	chr8:60770204:T:A	rs4738822	T	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr8	60777976	60777977	chr8:60777977:A:G	rs979995729	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr8	60936526	60936527	chr8:60936527:A:G	rs10087102	A	G	A	Sox3.mouse_HMG_3	10	1	+	0.5499997710757232	-6.057950870465075	AATGATTCCCAGTCAGA
chr8	61038218	61038219	chr8:61038219:A:G	rs7841714	A	G	A	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	61260186	61260187	chr8:61260187:C:T	rs3857973	C	T	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr8	61260203	61260204	chr8:61260204:C:T	rs111352600	C	T	C	Sox3.mouse_HMG_3	8	1	-	5.58895031341418	4.965833666236366	ACTGAATGGCATGCAAA
chr8	61262994	61262995	chr8:61262995:A:G	rs2931286	A	G	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr8	61562958	61562959	chr8:61562959:G:C	rs3824269	G	C	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr8	61710944	61710945	chr8:61710945:G:T	rs28587878	G	T	T	Sox3.mouse_HMG_3	14	1	-	3.84812403025681	10.230070196683723	AATGAAATATATTCCTG
chr8	61725875	61725876	chr8:61725876:G:T	rs10110165	G	T	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr8	62015598	62015599	chr8:62015599:G:A	rs344230	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr8	62027587	62027588	chr8:62027588:T:C	rs344211	T	C	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr8	62027607	62027608	chr8:62027608:G:A	rs16928247	G	A	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr8	62027623	62027624	chr8:62027624:C:T	rs58288894	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr8	62252554	62252555	chr8:62252555:C:T	rs13262465	C	T	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr8	62375410	62375411	chr8:62375411:C:A	rs4257998	C	A	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr8	62375431	62375432	chr8:62375432:C:G	rs4442137	C	G	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr8	62473637	62473638	chr8:62473638:G:T	rs2053938	G	T	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr8	62503629	62503630	chr8:62503630:T:C	rs1839870	T	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr8	63147042	63147043	chr8:63147043:T:C	rs144769662	T	C	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr8	63192203	63192204	chr8:63192204:T:C	rs183233929	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr8	63979136	63979137	chr8:63979137:A:G	rs12550637	A	G	A	Sox3.mouse_HMG_3	15	1	-	0.8100071356304819	-3.904386276084586	GTTGAATTCCAGTATTG
chr8	64182847	64182848	chr8:64182848:T:C	rs2356344	T	C	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	64782827	64782828	chr8:64782828:C:T	rs12674544	C	T	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr8	64916910	64916911	chr8:64916911:G:C	rs6994298	G	C	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr8	65010023	65010024	chr8:65010024:A:T	rs16931641	A	T	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr8	65092758	65092759	chr8:65092759:G:A	rs2956306	G	A	g	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	65143831	65143832	chr8:65143832:A:G	rs4737702	A	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr8	65143865	65143866	chr8:65143866:G:C	rs117273657	G	C	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr8	65191748	65191749	chr8:65191749:C:T	rs35523635	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr8	65556744	65556745	chr8:65556745:G:C	rs150191063	G	C	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr8	65634839	65634840	chr8:65634840:T:C	rs79932695	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr8	65634856	65634857	chr8:65634857:G:A	rs3812412	G	A	G	Sox3.mouse_HMG_3	13	1	-	2.0674873008341024	-4.539773309627917	AGTGATTGCCATCCATA
chr8	65888393	65888394	chr8:65888394:T:C	rs73244828	T	C	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr8	65928021	65928022	chr8:65928022:A:G	rs7006472	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr8	65965375	65965376	chr8:65965376:C:A	rs76351686	C	A	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr8	66064092	66064093	chr8:66064093:C:T	rs10091688	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr8	66407602	66407603	chr8:66407603:T:A	rs7003558	T	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr8	66459192	66459193	chr8:66459193:A:G	rs2718996	A	G	A	Sox3.mouse_HMG_3	11	1	-	2.285942455518935	-3.7986683705830098	TATGAAGTCTATGCAAA
chr8	66870321	66870322	chr8:66870322:A:G	rs76091110	A	G	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr8	67221757	67221758	chr8:67221758:C:T	rs182324189	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr8	67331370	67331371	chr8:67331371:G:A	rs74768077	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr8	67530511	67530512	chr8:67530512:C:T	rs2380414	C	T	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr8	67649203	67649204	chr8:67649204:A:G	rs7341614	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr8	68019444	68019445	chr8:68019445:G:T	rs6984225	G	T	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	68071154	68071155	chr8:68071155:G:A	rs985413	G	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr8	68347429	68347430	chr8:68347430:T:C	rs79301535	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr8	68612177	68612178	chr8:68612178:C:T	rs16934777	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr8	68736420	68736421	chr8:68736421:C:T	rs74772743	C	T	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr8	68770785	68770786	chr8:68770786:A:C	rs4299986	A	C	A	Sox3.mouse_HMG_3	10	1	+	6.351612504376156	-0.3994389808053137	GTTAAATTTTAGTCATT
chr8	68776860	68776861	chr8:68776861:G:T	rs7834286	G	T	G	Sox3.mouse_HMG_3	7	1	+	3.7649098797867904	2.914876937556719	CAGGGATGATATTCATA
chr8	68841287	68841288	chr8:68841288:T:C	rs13265265	T	C	T	Sox3.mouse_HMG_3	8	1	+	3.7318058390133424	3.993925583929448	AATGAATGTCAGCAATG
chr8	68970992	68970993	chr8:68970993:C:A	rs17613308	C	A	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr8	68971003	68971004	chr8:68971004:G:C	rs74501158	G	C	G	Sox3.mouse_HMG_3	3	1	+	12.293834348299715	5.544343612594665	CATGAATGTTAGTCAGG
chr8	69041377	69041378	chr8:69041378:T:A	rs11774986	T	A	A	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr8	69150767	69150768	chr8:69150768:A:C	rs4737269	A	C	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr8	69191928	69191929	chr8:69191929:T:G	rs9298146	T	G	T	Sox3.mouse_HMG_3	1	1	+	2.244557885580548	2.1145047573323508	CTTGAATGTTCGTCAAT
chr8	69217873	69217874	chr8:69217874:T:G	rs1096595	T	G	g	Sox3.mouse_HMG_3	7	1	+	2.748423239700306	3.5984561819303775	AATCAATTTGATTCATC
chr8	69705926	69705927	chr8:69705927:T:C	rs918004551	T	C	T	Sox3.mouse_HMG_3	6	1	+	4.022382081241365	-2.585568560299431	AATCAATTCCATTCTTG
chr8	70099721	70099722	chr8:70099722:T:C	rs3892266	T	C	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	70201362	70201363	chr8:70201363:C:G	rs4645588	C	G	G	Sox3.mouse_HMG_3	3	1	-	1.8802192545034833	-4.869271481201564	TATGATTGCTAGTCCAG
chr8	70240618	70240619	chr8:70240619:A:G	rs58840722	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	70328242	70328243	chr8:70328243:C:T	rs10504472	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr8	70776172	70776173	chr8:70776173:C:A	rs7000647	C	A	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr8	71011855	71011856	chr8:71011856:T:C	rs2639956	T	C	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr8	71106760	71106761	chr8:71106761:A:G	rs3919903	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	71131152	71131153	chr8:71131153:G:A	rs888857400	G	A	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr8	71566515	71566516	chr8:71566516:G:A	rs1424866	G	A	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr8	71608564	71608565	chr8:71608565:T:G	rs77651420	T	G	T	Sox3.mouse_HMG_3	1	1	-	0.7995651510118038	-3.3772943628440903	GATGATTGGCAGACAAC
chr8	71727880	71727881	chr8:71727881:T:C	rs3890710	T	C	T	Sox3.mouse_HMG_3	9	1	+	6.193975853250822	6.186339176259076	TATGCATTATAGTCAGA
chr8	71732985	71732986	chr8:71732986:G:T	rs6472613	G	T	T	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr8	71765113	71765114	chr8:71765114:C:T	rs4300047	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	71798069	71798070	chr8:71798070:A:T	rs28523719	A	T	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr8	72014221	72014222	chr8:72014222:G:A	rs35429596	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr8	72871962	72871963	chr8:72871963:A:G	rs7836026	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr8	72926866	72926867	chr8:72926867:A:G	rs10096641	A	G	A	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	73489718	73489719	chr8:73489719:G:A	rs13272002	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr8	73491196	73491197	chr8:73491197:A:C	rs7832194	A	C	A	Sox3.mouse_HMG_3	2	1	-	3.167687304237263	-3.5812926576343402	CATGAAATGTTTTCATA
chr8	73588193	73588194	chr8:73588194:G:A	rs73328776	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr8	73689578	73689579	chr8:73689579:T:C	rs10093439	T	C	C	Sox3.mouse_HMG_3	0	1	+	2.4010424822695167	0.9461718369326522	TCTGAATTCCATTCTCA
chr8	73900437	73900438	chr8:73900438:T:C	rs117047060	T	C	t	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr8	74061283	74061284	chr8:74061284:C:T	rs73331919	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr8	74166784	74166785	chr8:74166785:G:A	rs2956040	G	A	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr8	74601595	74601596	chr8:74601596:G:T	rs6472867	G	T	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr8	74648378	74648379	chr8:74648379:T:G	rs62521641	T	G	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr8	74861070	74861071	chr8:74861071:T:A	rs1433471	T	A	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr8	75118367	75118368	chr8:75118368:T:A	rs6981727	T	A	T	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr8	75402205	75402206	chr8:75402206:A:G	rs865939343	A	G	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr8	75481574	75481575	chr8:75481575:T:C	rs576485195	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr8	75483366	75483367	chr8:75483367:C:T	rs28691061	C	T	C	Sox3.mouse_HMG_3	3	1	-	0.5836554157970659	-5.197909471732168	AGAGAAATGCAGTCATG
chr8	76322691	76322692	chr8:76322692:C:T	rs2222684	C	T	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr8	76322703	76322704	chr8:76322704:C:A	rs10110701	C	A	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr8	76334105	76334106	chr8:76334106:T:G	rs10156271	T	G	G	Sox3.mouse_HMG_3	2	1	+	7.137828780759453	0.38884881888784895	GGTCAATTGCAGTCATG
chr8	77119008	77119009	chr8:77119009:A:G	rs117136173	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	77130488	77130489	chr8:77130489:C:A	rs6998856	C	A	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr8	77181600	77181601	chr8:77181601:C:A	rs7821178	C	A	C	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr8	77281109	77281110	chr8:77281110:A:G	rs80193527	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr8	77398734	77398735	chr8:77398735:G:C	rs10081460	G	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr8	77652038	77652039	chr8:77652039:A:C	rs12334948	A	C	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr8	77656250	77656251	chr8:77656251:T:C	rs1397103	T	C	C	Sox3.mouse_HMG_3	14	1	-	2.251077251977063	-4.130868914449848	GTTGAGTGGTATTAATT
chr8	77767159	77767160	chr8:77767160:A:G	rs7827238	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr8	78230079	78230080	chr8:78230080:T:C	rs28441036	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr8	78393942	78393943	chr8:78393943:G:T	rs7827766	G	T	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr8	78507787	78507788	chr8:78507788:A:G	rs183394476	A	G	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr8	78545823	78545824	chr8:78545824:T:C	rs117799949	T	C	T	Sox3.mouse_HMG_3	10	1	-	4.772038286570686	-1.8359123549701115	GATGATTTCTATTGATG
chr8	78571599	78571600	chr8:78571600:A:G	rs6473106	A	G	N	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr8	78595892	78595893	chr8:78595893:A:G	rs117992024	A	G	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr8	78646120	78646121	chr8:78646121:C:G	rs62517750	C	G	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	78680190	78680191	chr8:78680191:T:C	rs9298316	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	78806798	78806799	chr8:78806799:T:C	rs11777564	T	C	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr8	78956994	78956995	chr8:78956995:T:A	rs6473134	T	A	A	Sox3.mouse_HMG_3	1	1	-	4.888385128263308	1.9183083200742128	GATGATTTTTATCCATA
chr8	79125584	79125585	chr8:79125585:T:C	rs140355781	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr8	79131483	79131484	chr8:79131484:T:C	rs2102980	T	C	C	Sox3.mouse_HMG_3	6	1	+	2.2479215572611047	-4.3600290842796925	AAAGAATGTCGTTCAGA
chr8	80040736	80040737	chr8:80040737:G:A	rs1426322995	G	A	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr8	80043399	80043400	chr8:80043400:A:G	rs184566181	A	G	A	Sox3.mouse_HMG_3	9	1	-	2.623676760151958	2.616040083160212	TAGGAAGGATATTCAAG
chr8	80139891	80139892	chr8:80139892:T:C	rs7844190	T	C	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr8	80347210	80347211	chr8:80347211:G:A	rs10957975	G	A	g	Sox3.mouse_HMG_3	16	1	-	6.018037095020135	6.884963834492414	TATAAATGCTATTCACC
chr8	80364327	80364328	chr8:80364328:A:G	rs142924928	A	G	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	80488805	80488806	chr8:80488806:C:T	rs193012275	C	T	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr8	80683071	80683072	chr8:80683072:T:C	rs1319483565	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr8	80704386	80704387	chr8:80704387:T:A	rs73273027	T	A	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr8	80757985	80757986	chr8:80757986:T:C	rs73692128	T	C	T	Sox3.mouse_HMG_3	5	1	-	4.920973762693219	-1.5678611593776468	CTTCAATTACAGTCATG
chr8	81051300	81051301	chr8:81051301:C:T	rs6987322	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	81100994	81100995	chr8:81100995:C:T	rs56827627	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr8	81153108	81153109	chr8:81153109:C:G	rs1365680	C	G	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr8	81187031	81187032	chr8:81187032:T:A	rs116286578	T	A	T	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	81333124	81333125	chr8:81333125:G:A	rs1909935	G	A	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr8	81558350	81558351	chr8:81558351:G:A	rs193211427	G	A	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr8	81575165	81575166	chr8:81575166:C:T	rs7836970	C	T	C	Sox3.mouse_HMG_3	3	1	-	1.1794109331683016	-4.60215395436093	ACTGAATGACAATAATG
chr8	81663547	81663548	chr8:81663548:C:T	rs2400589	C	T	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr8	81855665	81855666	chr8:81855666:A:C	rs28437406	A	C	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr8	82228575	82228576	chr8:82228576:T:C	rs190305785	T	C	T	Sox3.mouse_HMG_3	15	1	-	4.276704989053488	3.417923642197067	TTTGCATTTCATTCAAT
chr8	82228586	82228587	chr8:82228587:G:A	rs4314656	G	A	A	Sox3.mouse_HMG_3	4	1	-	4.276704989053488	4.419805832694161	TTTGCATTTCATTCAAT
chr8	82675917	82675918	chr8:82675918:C:G	rs184755659	C	G	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	82755246	82755247	chr8:82755247:C:T	rs5012396	C	T	C	Sox3.mouse_HMG_3	5	1	-	1.527186969821407	8.01602189189227	GCTGAGTGCTGTTCATA
chr8	83365019	83365020	chr8:83365020:C:T	rs28396244	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr8	84100037	84100038	chr8:84100038:A:G	rs1866085	A	G	G	Sox3.mouse_HMG_3	4	1	+	5.027875615700526	-1.3549411122935424	TATAAATGTAAGTCATG
chr8	84139154	84139155	chr8:84139155:A:G	rs10504800	A	G	.	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr8	84210786	84210787	chr8:84210787:C:T	rs11780481	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr8	85007463	85007464	chr8:85007464:C:G	rs2896440	C	G	g	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	85007494	85007495	chr8:85007495:T:C	rs1534038	T	C	c	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr8	85076550	85076551	chr8:85076551:C:A	rs36158812	C	A	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr8	85106617	85106618	chr8:85106618:C:T	rs11261468	C	T	t	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr8	85106622	85106623	chr8:85106623:C:G	rs113697361	C	G	c	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr8	85461919	85461920	chr8:85461920:A:T	rs546220437	A	T	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr8	85976182	85976183	chr8:85976183:C:T	rs6469070	C	T	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr8	86036832	86036833	chr8:86036833:C:A	rs191650790	C	A	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr8	86391892	86391893	chr8:86391893:G:A	rs147615845	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr8	86873021	86873022	chr8:86873022:A:G	rs2446123	A	G	G	Sox3.mouse_HMG_3	13	1	+	1.6233333621225463	1.3987094256379025	GGTGAATTTCAGTAAGC
chr8	87061527	87061528	chr8:87061528:T:C	rs75495130	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	87428244	87428245	chr8:87428245:A:G	rs16868510	A	G	A	Sox3.mouse_HMG_3	1	1	+	1.965731687544597	-1.134398248892694	AATGAATGGCTTTGAGG
chr8	87428264	87428265	chr8:87428265:A:C	rs9297322	A	C	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr8	87469599	87469600	chr8:87469600:A:G	rs2905414	A	G	A	Sox3.mouse_HMG_3	1	1	-	8.194293715928502	6.987511010261703	ATAGAATTTCATTCATG
chr8	87581924	87581925	chr8:87581925:T:C	rs187714258	T	C	t	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr8	87676689	87676690	chr8:87676690:T:C	rs6468960	T	C	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr8	87676725	87676726	chr8:87676726:G:A	rs7009308	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr8	87751606	87751607	chr8:87751607:G:A	rs112805007	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr8	87975340	87975341	chr8:87975341:A:G	rs34030179	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr8	88319200	88319201	chr8:88319201:A:G	rs73692227	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr8	88899432	88899433	chr8:88899433:A:G	rs11998010	A	G	g	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	88899478	88899479	chr8:88899479:T:C	rs11984484	T	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr8	89636341	89636342	chr8:89636342:G:A	rs160409	G	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr8	89756917	89756918	chr8:89756918:T:C	rs192237217	T	C	t	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr8	89756936	89756937	chr8:89756937:G:C	rs911280802	G	C	G	Sox3.mouse_HMG_3	8	1	+	1.567288700472411	1.124506031794479	GTAGAAAGGTATTCAAG
chr8	89760603	89760604	chr8:89760604:T:C	rs182078627	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr8	89797656	89797657	chr8:89797657:G:A	rs77728062	G	A	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	89797690	89797691	chr8:89797691:C:T	rs112021791	C	T	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr8	89816760	89816761	chr8:89816761:G:A	rs39515	G	A	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr8	89840351	89840352	chr8:89840352:C:T	rs34525502	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	89924140	89924141	chr8:89924141:G:A	rs2697677	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr8	89928480	89928481	chr8:89928481:T:C	rs28486026	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.0854588021510867	-5.520420316079843	CATGCAGGTTATTCAAG
chr8	90187802	90187803	chr8:90187803:C:T	rs148882771	C	T	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr8	90324920	90324921	chr8:90324921:T:C	rs149244231	T	C	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr8	90563888	90563889	chr8:90563889:A:G	rs79272506	A	G	A	Sox3.mouse_HMG_3	11	1	-	2.902863686782471	-3.1817471393194747	AATTAACTGTATTCATT
chr8	90770048	90770049	chr8:90770049:G:T	rs17645841	G	T	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr8	91037743	91037744	chr8:91037744:C:T	rs12545269	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr8	91038375	91038376	chr8:91038376:T:G	rs7016498	T	G	G	Sox3.mouse_HMG_3	14	1	-	5.406900224249297	-0.975045942177614	AATGAATTTTAGTTAAT
chr8	91180270	91180271	chr8:91180271:A:G	rs7822260	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr8	91964463	91964464	chr8:91964464:A:C	rs146429147	A	C	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	92064324	92064325	chr8:92064325:A:G	rs4458918	A	G	A	Sox3.mouse_HMG_3	2	1	-	2.5493389519210563	-4.056540166309873	TATGAATTGTGGTCTTT
chr8	92281232	92281233	chr8:92281233:A:G	rs7014625	A	G	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr8	92281268	92281269	chr8:92281269:A:G	rs77271401	A	G	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr8	92437983	92437984	chr8:92437984:G:A	rs1072934	G	A	G	Sox3.mouse_HMG_3	11	1	-	1.5622008356687593	7.646811661770705	CATGAATTATACTCCTC
chr8	92643061	92643062	chr8:92643062:G:T	rs116388661	G	T	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr8	92685321	92685322	chr8:92685322:C:T	rs72677412	C	T	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr8	92782411	92782412	chr8:92782412:C:G	rs768387726	C	G	C	Sox3.mouse_HMG_3	0	1	-	3.0232762021673327	1.299484703030714	GATGAATGGTCTTAAGG
chr8	92812756	92812757	chr8:92812757:G:T	rs4276664	G	T	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	92978274	92978275	chr8:92978275:C:G	rs79559352	C	G	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr8	93092005	93092006	chr8:93092006:G:A	rs438723	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr8	93197099	93197100	chr8:93197100:C:T	rs278529	C	T	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr8	93935710	93935711	chr8:93935711:T:C	rs16916275	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr8	93990806	93990807	chr8:93990807:C:G	chr8:93990807:C:G	C	G	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	94061672	94061673	chr8:94061673:C:T	rs12548619	C	T	C	Sox3.mouse_HMG_3	8	1	-	3.1883933190434472	2.565276671865634	AGTGAAGTGCAGTCAGG
chr8	94065940	94065941	chr8:94065941:A:G	rs3018901	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	94065961	94065962	chr8:94065962:A:G	rs3018902	A	G	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	94165703	94165704	chr8:94165704:C:G	rs73266249	C	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr8	94601413	94601414	chr8:94601414:T:C	rs9642927	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr8	94760646	94760647	chr8:94760647:C:G	rs114749125	C	G	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr8	95102644	95102645	chr8:95102645:C:A	rs4735344	C	A	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr8	95110232	95110233	chr8:95110233:T:A	rs78630713	T	A	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr8	95147993	95147994	chr8:95147994:A:C	rs79226605	A	C	A	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr8	95166916	95166917	chr8:95166917:C:T	rs297562	C	T	T	Sox3.mouse_HMG_3	16	1	-	3.5327703881530104	3.4968299317004847	CTTGAATTCAAGTCAAG
chr8	95270311	95270312	chr8:95270312:G:C	rs2452476	G	C	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr8	95329737	95329738	chr8:95329738:A:G	rs116960309	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr8	95439894	95439895	chr8:95439895:A:G	rs3133760	A	G	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	95603072	95603073	chr8:95603073:A:G	rs34789154	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr8	95681776	95681777	chr8:95681777:A:C	rs3102490	A	C	a	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	96160174	96160175	chr8:96160175:A:G	rs2466129	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	96160177	96160178	chr8:96160178:A:T	rs75072306	A	T	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	96268134	96268135	chr8:96268135:C:A	rs147588193	C	A	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr8	96269909	96269910	chr8:96269910:G:A	rs28713338	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	96496102	96496103	chr8:96496103:G:A	rs2575705	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr8	96496132	96496133	chr8:96496133:G:T	rs1348563	G	T	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr8	96591230	96591231	chr8:96591231:C:T	chr8:96591231:C:T	C	T	C	Sox3.mouse_HMG_3	9	1	+	7.5399417150639785	7.5475783920557244	AATGAAAGTCATTCAAT
chr8	96929740	96929741	chr8:96929741:A:G	rs965703047	A	G	A	Sox3.mouse_HMG_3	0	1	+	1.5363674002904488	2.361651301436793	AATGAATTCTACTCTGA
chr8	96934186	96934187	chr8:96934187:G:A	rs73698822	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr8	97060525	97060526	chr8:97060526:A:T	rs2513340	A	T	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr8	97061093	97061094	chr8:97061094:A:T	rs6992561	A	T	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	97134515	97134516	chr8:97134516:C:A	rs16895249	C	A	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr8	97386869	97386870	chr8:97386870:A:T	rs10955120	A	T	A	Sox3.mouse_HMG_3	6	1	-	1.851129093811789	-4.8999223913696826	TAAGAATGGGAATCATG
chr8	97595877	97595878	chr8:97595878:T:A	rs75560357	T	A	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr8	97637585	97637586	chr8:97637586:G:A	rs72669689	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr8	97929788	97929789	chr8:97929789:G:A	rs1037529	G	A	G	Sox3.mouse_HMG_3	15	1	-	2.0335937165305276	6.747987128245596	GATGGATGGTATACACA
chr8	98065879	98065880	chr8:98065880:A:G	rs79258171	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr8	98213108	98213109	chr8:98213109:T:C	rs6468620	T	C	T	Sox3.mouse_HMG_3	14	1	-	0.7498220725120288	-5.632124093914882	TGTGAGTGCCTGTCATA
chr8	98373164	98373165	chr8:98373165:C:T	rs11994260	C	T	C	Sox3.mouse_HMG_3	9	1	+	2.5379358817989757	2.5455725587907216	CATAAATGGCAGTTATT
chr8	98457011	98457012	chr8:98457012:A:G	chr8:98457012:A:G	A	G	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr8	98487958	98487959	chr8:98487959:C:T	rs4348458	C	T	T	Sox3.mouse_HMG_3	0	1	-	2.4321121161125445	1.6068282149661999	GTTGAATGGAAGGCATG
chr8	98558305	98558306	chr8:98558306:A:G	rs111898025	A	G	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr8	98558313	98558314	chr8:98558314:T:A	rs72666645	T	A	T	Sox3.mouse_HMG_3	14	1	-	1.0326800404423495	-5.3492661259845615	TCTGAAAGCTATTGATG
chr8	98723227	98723228	chr8:98723228:G:C	rs118042458	G	C	G	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr8	98834711	98834712	chr8:98834712:T:G	rs2922073	T	G	T	Sox3.mouse_HMG_3	15	1	+	4.4667292817740245	1.344138470680783	GACTAATTCCATTCATG
chr8	98930901	98930902	chr8:98930902:G:A	rs986826625	G	A	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr8	99024814	99024815	chr8:99024815:C:A	rs78791374	C	A	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	99536746	99536747	chr8:99536747:C:T	rs16897440	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr8	99800071	99800072	chr8:99800072:A:G	rs10092463	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr8	99942162	99942163	chr8:99942163:G:A	rs61024211	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr8	99942170	99942171	chr8:99942171:T:A	rs77085085	T	A	T	Sox3.mouse_HMG_3	2	1	+	1.5876670256074696	-4.139661688732154	AGTGAATTGGATTCTTT
chr8	100159009	100159010	chr8:100159010:T:C	rs2514691	T	C	C	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr8	100723157	100723158	chr8:100723158:C:T	rs118153451	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	100723321	100723322	chr8:100723322:G:A	rs75109210	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	100789881	100789882	chr8:100789882:A:C	rs28461712	A	C	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr8	100915466	100915467	chr8:100915467:C:T	rs13254653	C	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr8	101071223	101071224	chr8:101071224:A:G	rs737707	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.148729910304617	-5.340105011766247	GATCAATTCCAGTAAAG
chr8	101239928	101239929	chr8:101239929:A:G	rs16899127	A	G	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	101240403	101240404	chr8:101240404:T:C	rs1947124	T	C	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr8	101446634	101446635	chr8:101446635:T:A	rs56081272	T	A	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr8	101646303	101646304	chr8:101646304:A:C	rs4317540	A	C	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr8	101722875	101722876	chr8:101722876:T:A	rs75533169	T	A	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr8	101733994	101733995	chr8:101733995:C:T	rs12545512	C	T	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr8	101760743	101760744	chr8:101760744:A:T	rs73699938	A	T	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr8	101774102	101774103	chr8:101774103:G:C	rs77513317	G	C	G	Sox3.mouse_HMG_3	13	1	-	5.5379865445205	-1.06927406594152	ATTGAATTCCATTCTAG
chr8	101884928	101884929	chr8:101884929:T:C	rs149860778	T	C	T	Sox3.mouse_HMG_3	9	1	+	1.0117532923664303	1.0041166153746843	AATGAAAGGTATTCTGT
chr8	102097822	102097823	chr8:102097823:T:G	rs73700217	T	G	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	102315765	102315766	chr8:102315766:T:G	rs76034601	T	G	T	Sox3.mouse_HMG_3	10	1	-	1.9741504307606026	-4.776901054420867	ATTGAAATGCATTCACT
chr8	102584608	102584609	chr8:102584609:G:T	rs28522620	G	T	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr8	102584766	102584767	chr8:102584767:C:T	rs7012947	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr8	102585771	102585772	chr8:102585772:T:C	rs73698915	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	102699229	102699230	chr8:102699230:C:T	rs140977338	C	T	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr8	102702916	102702917	chr8:102702917:A:G	rs151203037	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr8	102789328	102789329	chr8:102789329:C:T	rs768878	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr8	102789368	102789369	chr8:102789369:G:A	rs150869760	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr8	102797760	102797761	chr8:102797761:G:A	rs148507415	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	102797766	102797767	chr8:102797767:T:C	rs10955293	T	C	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	102797770	102797771	chr8:102797771:T:C	rs191704125	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr8	103022374	103022375	chr8:103022375:G:A	rs566435356	G	A	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr8	103151693	103151694	chr8:103151694:T:C	rs28672985	T	C	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	103265042	103265043	chr8:103265043:G:A	rs62525475	G	A	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr8	103354451	103354452	chr8:103354452:T:A	rs111403153	T	A	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr8	103574550	103574551	chr8:103574551:T:G	rs6985202	T	G	T	Sox3.mouse_HMG_3	4	1	-	2.61411312989969	-4.136428378219694	AGAGAATGACATTCTTG
chr8	103599202	103599203	chr8:103599203:G:C	rs28497553	G	C	G	Sox3.mouse_HMG_3	3	1	+	5.803055505923048	-0.9464352297820027	TTTGGATTTTATTCAAA
chr8	103599222	103599223	chr8:103599223:T:G	rs28709005	T	G	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	103760313	103760314	chr8:103760314:T:C	rs3110457	T	C	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	103809702	103809703	chr8:103809703:G:A	rs1014877796	G	A	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr8	103919380	103919381	chr8:103919381:C:T	rs10091544	C	T	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr8	104224431	104224432	chr8:104224432:A:G	rs56049239	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr8	104232323	104232324	chr8:104232324:T:C	rs78377066	T	C	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr8	104856635	104856636	chr8:104856636:T:C	rs4410874	T	C	C	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr8	104952704	104952705	chr8:104952705:T:C	rs114019393	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr8	105077058	105077059	chr8:105077059:T:G	rs16872280	T	G	T	Sox3.mouse_HMG_3	6	1	+	3.0807548537828655	-3.670296631398604	TATGAATGGCATGAAGA
chr8	105106035	105106036	chr8:105106036:G:A	rs9297355	G	A	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr8	105106070	105106071	chr8:105106071:G:A	rs285799	G	A	A	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr8	105314543	105314544	chr8:105314544:C:A	rs2069199	C	A	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	105499302	105499303	chr8:105499303:G:A	rs72673712	G	A	G	Sox3.mouse_HMG_3	11	1	+	5.038943991153151	0.3887692653470123	AATGACTGATAGTCACA
chr8	105540355	105540356	chr8:105540356:C:G	rs4273825	C	G	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr8	105569299	105569300	chr8:105569300:A:T	rs6993770	A	T	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr8	105592237	105592238	chr8:105592238:T:C	rs72673761	T	C	t	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr8	105598430	105598431	chr8:105598431:A:C	rs6999963	A	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr8	105642044	105642045	chr8:105642045:G:A	rs2165646	G	A	A	Sox3.mouse_HMG_3	9	1	-	1.603716502868056	1.611353179859802	CTTGAATGACAGTGAGT
chr8	105787721	105787722	chr8:105787722:A:C	rs16873692	A	C	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr8	105866937	105866938	chr8:105866938:A:G	rs78900483	A	G	A	Sox3.mouse_HMG_3	15	1	+	1.8622074546806395	1.003426107824219	AATGAAAGGCATTAAAT
chr8	105994733	105994734	chr8:105994734:T:C	rs7819501	T	C	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr8	106087303	106087304	chr8:106087304:A:G	rs148078989	A	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr8	106096632	106096633	chr8:106096633:T:G	rs117770122	T	G	t	Sox3.mouse_HMG_3	5	1	-	0.9458023092616402	-5.661638355217071	CAGGAATTGCAGTCCTT
chr8	106109149	106109150	chr8:106109150:T:C	rs11779516	T	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr8	106280511	106280512	chr8:106280512:T:C	rs78020201	T	C	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr8	106318444	106318445	chr8:106318445:C:G	rs114962106	C	G	C	Sox3.mouse_HMG_3	13	1	+	7.169307381715038	0.5620467712530184	TTTGTATGGTATTCAAG
chr8	106331032	106331033	chr8:106331033:A:G	rs7834655	A	G	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr8	106785811	106785812	chr8:106785812:T:C	rs2449832	T	C	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr8	106826797	106826798	chr8:106826798:T:C	rs117697921	T	C	T	Sox3.mouse_HMG_3	5	1	-	2.1512858083862074	-4.337549113684657	GACCAATTATATTCAAA
chr8	106864309	106864310	chr8:106864310:G:A	rs16875205	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr8	107105186	107105187	chr8:107105187:C:A	rs10092739	C	A	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	107169993	107169994	chr8:107169994:C:T	rs10505096	C	T	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr8	107261089	107261090	chr8:107261090:T:G	rs2514879	T	G	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr8	107295108	107295109	chr8:107295109:G:A	rs10505105	G	A	G	Sox3.mouse_HMG_3	7	1	+	2.9114374105971104	-3.6421113040606183	AAGAAATGTCATTCAAA
chr8	107308819	107308820	chr8:107308820:T:C	rs7011605	T	C	T	Sox3.mouse_HMG_3	4	1	-	1.250373466608061	-5.132443261386007	GGTGAAAGACAGACATG
chr8	107315540	107315541	chr8:107315541:C:G	rs16876021	C	G	C	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr8	107381556	107381557	chr8:107381557:A:G	rs72672570	A	G	A	Sox3.mouse_HMG_3	8	1	+	4.972814795037986	5.595931442215799	GAGGAATTATACTCATG
chr8	107381570	107381571	chr8:107381571:T:A	rs2445358	T	A	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr8	107381571	107381572	chr8:107381572:C:T	rs2514864	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	107469740	107469741	chr8:107469741:A:G	rs16876338	A	G	A	Sox3.mouse_HMG_3	15	1	-	2.013016222371919	-2.701377189343149	CATGTATTGCAGTGATA
chr8	107675342	107675343	chr8:107675343:C:G	rs1494973	C	G	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr8	107740313	107740314	chr8:107740314:G:T	rs13278956	G	T	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	107889496	107889497	chr8:107889497:G:C	rs35417318	G	C	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr8	108066416	108066417	chr8:108066417:G:T	chr8:108066417:G:T	G	T	G	Sox3.mouse_HMG_3	3	1	+	1.34549780306842	-5.560996681446294	TTTGCATTTCATTCCTG
chr8	108081803	108081804	chr8:108081804:C:T	rs142665174	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr8	108584531	108584532	chr8:108584532:T:A	rs75340975	T	A	T	Sox3.mouse_HMG_3	11	1	+	8.439883104291138	2.3552722781891937	AGAGAATGGTATTCATT
chr8	108955729	108955730	chr8:108955730:C:T	rs73303566	C	T	C	Sox3.mouse_HMG_3	1	1	-	2.803251006876609	5.903380943313901	CGTGGATGTCAGTCAGG
chr8	109346442	109346443	chr8:109346443:T:C	rs2926239	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	109346461	109346462	chr8:109346462:A:G	rs2980583	A	G	G	Sox3.mouse_HMG_3	12	1	-	2.5200592272393028	-3.672794340161465	CATTAATTGCACTCATT
chr8	109534871	109534872	chr8:109534872:G:C	rs55959787	G	C	G	Sox3.mouse_HMG_3	13	1	-	3.145951294570147	-3.4613093158918726	GGTGAATGGCGTTCTTA
chr8	109620986	109620987	chr8:109620987:T:C	rs78670597	T	C	T	Sox3.mouse_HMG_3	9	1	+	3.138863832876635	3.131227155884889	AATGAAATCTAATCATT
chr8	109745438	109745439	chr8:109745439:T:C	rs34966845	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr8	110559892	110559893	chr8:110559893:A:G	rs13274273	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr8	110586977	110586978	chr8:110586978:T:C	rs4321975	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr8	110635957	110635958	chr8:110635958:A:T	rs11989354	A	T	A	Sox3.mouse_HMG_3	6	1	-	2.202509011613196	-4.548542473568276	AATGCATGCCTTTCAAA
chr8	110746588	110746589	chr8:110746589:T:C	rs6997576	T	C	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr8	111404476	111404477	chr8:111404477:G:C	rs548597174	G	C	G	Sox3.mouse_HMG_3	3	1	-	1.7644764511535167	8.513967186858569	AATCAATGTTATACAGG
chr8	111469107	111469108	chr8:111469108:G:A	rs6992309	G	A	G	Sox3.mouse_HMG_3	13	1	+	2.388888184474731	2.613512120959375	TTTGAATTCCAGTGAGT
chr8	111771815	111771816	chr8:111771816:T:G	rs1510573	T	G	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	111772013	111772014	chr8:111772014:T:A	rs73338363	T	A	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr8	111902636	111902637	chr8:111902637:G:A	rs62520442	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr8	111963139	111963140	chr8:111963140:T:G	rs12546646	T	G	T	Sox3.mouse_HMG_3	14	1	+	1.358545518460897	1.358545518460897	TGTGATTTTCATTCTTG
chr8	112267794	112267795	chr8:112267795:C:T	rs185903466	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr8	112736269	112736270	chr8:112736270:G:A	rs16884004	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr8	113163785	113163786	chr8:113163786:G:C	rs72685896	G	C	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	113386665	113386666	chr8:113386666:G:C	rs9649937	G	C	C	Sox3.mouse_HMG_3	8	1	+	1.3997330621659156	0.9569503934879839	ACTCAATGGCAATCATA
chr8	113525313	113525314	chr8:113525314:G:A	rs543025460	G	A	g	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr8	113788434	113788435	chr8:113788435:G:T	chr8:113788435:G:T	G	T	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr8	114046995	114046996	chr8:114046996:A:G	rs10955697	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr8	114630306	114630307	chr8:114630307:A:C	rs7829520	A	C	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr8	114637598	114637599	chr8:114637599:G:T	rs1995069	G	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr8	114712711	114712712	chr8:114712712:G:A	rs7830645	G	A	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr8	114785334	114785335	chr8:114785335:T:C	rs80247303	T	C	T	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	114941358	114941359	chr8:114941359:G:A	rs6985875	G	A	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr8	114975979	114975980	chr8:114975980:A:G	rs610750	A	G	G	Sox3.mouse_HMG_3	4	1	+	1.737125373442555	-4.645691354551516	GATGATGTTCAGTCATT
chr8	114983122	114983123	chr8:114983123:C:T	rs2575924	C	T	T	Sox3.mouse_HMG_3	1	1	+	3.486845762979226	4.6936284686460255	ACTGAATTGGAGTCAGA
chr8	115081995	115081996	chr8:115081996:C:G	rs1494750	C	G	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	115221480	115221481	chr8:115221481:C:T	rs62511683	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr8	115258083	115258084	chr8:115258084:T:C	rs74550597	T	C	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr8	115265234	115265235	chr8:115265235:T:C	rs77246062	T	C	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	115440111	115440112	chr8:115440112:T:C	rs3808409	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr8	115563444	115563445	chr8:115563445:C:G	rs6998861	C	G	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr8	115659139	115659140	chr8:115659140:G:T	rs10086741	G	T	G	Sox3.mouse_HMG_3	13	1	-	6.990895561399007	0.6082588874216318	TTTGAATTACATTCTTT
chr8	115865115	115865116	chr8:115865116:T:C	rs6469608	T	C	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr8	115930541	115930542	chr8:115930542:T:C	rs13256823	T	C	C	Sox3.mouse_HMG_3	11	1	+	1.221218459916835	-4.86339236618511	GCTGAATGTCTTTCTTA
chr8	116080908	116080909	chr8:116080909:A:G	rs568062887	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	116097425	116097426	chr8:116097426:G:C	rs117270576	G	C	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr8	116167687	116167688	chr8:116167688:T:C	rs10955767	T	C	T	Sox3.mouse_HMG_3	8	1	+	1.727358276130007	1.989478021046113	GATGAAGGTTGGTCATC
chr8	116301296	116301297	chr8:116301297:T:C	rs17742676	T	C	T	Sox3.mouse_HMG_3	6	1	+	3.0642159192536207	-3.5437347222871765	GAAGAATTATTTTCAAG
chr8	116601560	116601561	chr8:116601561:C:A	rs10435543	C	A	c	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	116636479	116636480	chr8:116636480:C:T	rs6988452	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr8	116867414	116867415	chr8:116867415:G:A	rs7820245	G	A	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr8	117232387	117232388	chr8:117232388:T:C	rs1392045	T	C	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	117335439	117335440	chr8:117335440:T:C	rs73323296	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr8	117443545	117443546	chr8:117443546:G:A	rs529082337	G	A	A	Sox3.mouse_HMG_3	0	1	+	1.0813834959052442	0.2560995947589002	GCAGAATGACAGCCATA
chr8	117614039	117614040	chr8:117614040:G:A	rs10100465	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr8	117796994	117796995	chr8:117796995:G:A	rs116969898	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr8	117905901	117905902	chr8:117905902:G:A	rs6469716	G	A	G	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr8	117957428	117957429	chr8:117957429:G:A	rs139559707	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr8	117957435	117957436	chr8:117957436:C:T	chr8:117957436:C:T	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr8	117969843	117969844	chr8:117969844:C:T	rs79194317	C	T	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr8	118262009	118262010	chr8:118262010:T:G	rs4876407	T	G	C	Sox3.mouse_HMG_3	6	1	+	1.0308603735716422	-5.720191111609829	AATGCATTCCTGTCATT
chr8	118278733	118278734	chr8:118278734:C:T	rs141108945	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr8	118298117	118298118	chr8:118298118:C:T	rs141896092	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	118386805	118386806	chr8:118386806:C:T	rs744079	C	T	c	Sox3.mouse_HMG_3	11	1	-	2.1731069332368387	-2.4770677925693003	TATGACATGCAGTCATT
chr8	118491836	118491837	chr8:118491837:T:C	rs2515022	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr8	118517907	118517908	chr8:118517908:C:T	rs74499227	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr8	118585140	118585141	chr8:118585141:A:G	rs2460960	A	G	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr8	118685784	118685785	chr8:118685785:A:G	rs4876424	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr8	118685798	118685799	chr8:118685799:C:A	rs73709173	C	A	C	Sox3.mouse_HMG_3	7	1	-	7.91160075162542	7.061567809395348	TATGAATGTTACTCAGT
chr8	118953298	118953299	chr8:118953299:T:A	rs1023968	T	A	t	Sox3.mouse_HMG_3	0	1	-	1.0787254870123584	1.635088534358949	AGTGATTTGGAGTCATA
chr8	119083588	119083589	chr8:119083589:A:G	rs2450069	A	G	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr8	119083619	119083620	chr8:119083620:C:G	rs2450068	C	G	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	119131626	119131627	chr8:119131627:T:C	rs75387094	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr8	119204383	119204384	chr8:119204384:G:T	rs13253285	G	T	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr8	119497184	119497185	chr8:119497185:T:C	rs35646652	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr8	119569041	119569042	chr8:119569042:C:T	rs3765048	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr8	119648693	119648694	chr8:119648694:G:A	rs114380890	G	A	G	Sox3.mouse_HMG_3	8	1	+	4.277787452748445	3.6546708055706314	AGTGAAGGGCATTCAAC
chr8	119650701	119650702	chr8:119650702:G:A	rs17803964	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr8	119671451	119671452	chr8:119671452:G:T	rs72688246	G	T	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr8	119671505	119671506	chr8:119671506:T:C	rs1002850	T	C	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr8	119701411	119701412	chr8:119701412:G:A	rs987534	G	A	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr8	119847579	119847580	chr8:119847580:T:C	rs7017279	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr8	119873401	119873402	chr8:119873402:A:C	rs186682194	A	C	.	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr8	119900866	119900867	chr8:119900867:A:G	rs74693645	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr8	119912296	119912297	chr8:119912297:A:G	rs939241	A	G	A	Sox3.mouse_HMG_3	4	1	-	5.1184583510488295	4.975357507408157	TGTGTATGCCAGTCAAA
chr8	119924800	119924801	chr8:119924801:A:G	rs1464276	A	G	G	Sox3.mouse_HMG_3	0	1	-	3.9541059694947007	2.4992353241578362	TATGCAGTTTATTCATG
chr8	120015821	120015822	chr8:120015822:C:T	rs7818635	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr8	120036298	120036299	chr8:120036299:A:T	rs73315928	A	T	A	Sox3.mouse_HMG_3	10	1	+	5.833184866906037	-0.9178666182754339	TGTGAAAGTTAGTCATT
chr8	120125378	120125379	chr8:120125379:C:T	rs77121399	C	T	C	Sox3.mouse_HMG_3	2	1	+	1.383174619118421	7.9890537373493515	TTCGAAGTCCATTCATG
chr8	120625590	120625591	chr8:120625591:T:C	rs187623543	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr8	121132755	121132756	chr8:121132756:C:T	rs1560771	C	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr8	121163818	121163819	chr8:121163819:T:A	rs79461417	T	A	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	121164001	121164002	chr8:121164002:A:G	rs114386357	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr8	121275974	121275975	chr8:121275975:T:C	rs1466942	T	C	T	Sox3.mouse_HMG_3	4	1	-	3.997437250687841	-2.3853794773062282	GATAAAATTCATTCATT
chr8	121324702	121324703	chr8:121324703:A:G	rs56023279	A	G	G	Sox3.mouse_HMG_3	12	1	-	3.3522525060608017	-2.8406010613399646	TGTGAAAGACATTCAGC
chr8	121324703	121324704	chr8:121324704:A:G	rs56019878	A	G	G	Sox3.mouse_HMG_3	11	1	-	3.3522525060608017	-2.7323583200411434	TGTGAAAGACATTCAGC
chr8	121481186	121481187	chr8:121481187:A:G	rs7839194	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	121603220	121603221	chr8:121603221:G:A	rs12056571	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr8	121637383	121637384	chr8:121637384:A:C	rs6470014	A	C	A	Sox3.mouse_HMG_3	0	1	-	14.606121410134765	14.875042263934521	TTTGAATGGTAGTCATG
chr8	121784936	121784937	chr8:121784937:T:C	rs75876127	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr8	121838975	121838976	chr8:121838976:A:G	rs114467533	A	G	A	Sox3.mouse_HMG_3	10	1	-	2.04879895299419	2.04879895299419	AATGAATTCATTTCAAA
chr8	122281295	122281296	chr8:122281296:T:C	rs7844082	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	122478639	122478640	chr8:122478640:T:G	chr8:122478640:T:G	T	G	T	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	122651221	122651222	chr8:122651222:T:C	rs1608361	T	C	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr8	122687133	122687134	chr8:122687134:C:T	rs767065409	C	T	C	Sox3.mouse_HMG_3	8	1	+	4.516845335928085	4.2547255910119794	GATGAATGCTCTTCCTT
chr8	122687139	122687140	chr8:122687140:C:G	rs11777104	C	G	C	Sox3.mouse_HMG_3	14	1	+	4.516845335928085	4.516845335928085	GATGAATGCTCTTCCTT
chr8	122813489	122813490	chr8:122813490:G:A	rs117152515	G	A	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr8	122897979	122897980	chr8:122897980:C:T	rs4870823	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr8	123012771	123012772	chr8:123012772:T:C	rs578104600	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr8	123517136	123517137	chr8:123517137:A:G	rs7834818	A	G	G	Sox3.mouse_HMG_3	14	1	+	2.670986181191006	-3.7109599852359048	TTTGAAGGGCAGTCAGC
chr8	123578267	123578268	chr8:123578268:T:C	rs72711207	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr8	123579872	123579873	chr8:123579873:A:T	rs563691150	A	T	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr8	123599151	123599152	chr8:123599152:G:C	rs78379790	G	C	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr8	123618957	123618958	chr8:123618958:C:T	rs544741790	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	123670966	123670967	chr8:123670967:C:T	rs113926653	C	T	C	Sox3.mouse_HMG_3	3	1	-	2.471492745443589	-3.3100721420856427	CAAGTATTTCATTCATT
chr8	123670969	123670970	chr8:123670970:G:A	rs62518593	G	A	G	Sox3.mouse_HMG_3	0	1	-	2.471492745443589	3.9263633907804545	CAAGTATTTCATTCATT
chr8	123732363	123732364	chr8:123732364:C:T	rs2385506	C	T	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr8	123732398	123732399	chr8:123732399:T:C	rs2385507	T	C	T	Sox3.mouse_HMG_3	15	1	+	3.287904113541802	-1.4264892981732662	TATAAATGTCAGTTATT
chr8	123732419	123732420	chr8:123732420:A:G	rs2891799	A	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr8	123792428	123792429	chr8:123792429:C:T	rs7828192	C	T	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr8	123910882	123910883	chr8:123910883:T:C	rs12548510	T	C	T	Sox3.mouse_HMG_3	5	1	-	1.6756965422349648	-4.8131383798359	CATCAATTTCATGCATT
chr8	123925065	123925066	chr8:123925066:A:G	rs76134635	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr8	124422842	124422843	chr8:124422843:G:C	rs72710899	G	C	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	124579348	124579349	chr8:124579349:T:C	rs6991135	T	C	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr8	124588168	124588169	chr8:124588169:T:C	rs7010757	T	C	T	Sox3.mouse_HMG_3	1	1	+	2.382697616385073	1.175914910718275	ATAGAATGATTTTCATG
chr8	124619039	124619040	chr8:124619040:T:A	rs4870913	T	A	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr8	124719019	124719020	chr8:124719020:T:C	rs7842864	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	124765743	124765744	chr8:124765744:T:C	rs6470279	T	C	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr8	124849085	124849086	chr8:124849086:G:A	rs1055876978	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr8	125070262	125070263	chr8:125070263:C:T	rs112064300	C	T	T	Sox3.mouse_HMG_3	0	1	-	6.563490269247058	5.738206368100713	GTGGAATTTCAGTCATG
chr8	125149785	125149786	chr8:125149786:T:C	rs75358093	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr8	125156721	125156722	chr8:125156722:C:A	rs74493457	C	A	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	125294674	125294675	chr8:125294675:G:A	rs10101690	G	A	A	Sox3.mouse_HMG_3	0	1	+	11.959755471371615	11.134471570225273	GATGAATGTCATTTATG
chr8	125307692	125307693	chr8:125307693:A:C	chr8:125307693:A:C	A	C	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr8	125345776	125345777	chr8:125345777:G:A	rs112409727	G	A	G	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr8	125358636	125358637	chr8:125358637:T:G	rs6651237	T	G	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr8	125517163	125517164	chr8:125517164:G:C	rs4352874	G	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr8	125517170	125517171	chr8:125517171:T:C	rs4347008	T	C	C	Sox3.mouse_HMG_3	14	1	-	7.486677723203119	1.1047315567762073	GATCAATGCCAGTCAGA
chr8	125553906	125553907	chr8:125553907:G:A	rs59256158	G	A	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr8	125601315	125601316	chr8:125601316:G:A	rs1454620	G	A	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr8	126232720	126232721	chr8:126232721:A:G	rs7014830	A	G	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	126288106	126288107	chr8:126288107:G:A	rs4242379	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr8	126327260	126327261	chr8:126327261:C:G	rs11782116	C	G	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr8	126390697	126390698	chr8:126390698:C:T	rs117595850	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	126450738	126450739	chr8:126450739:G:T	rs2223038	G	T	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr8	126474698	126474699	chr8:126474699:T:G	rs192997579	T	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	126896552	126896553	chr8:126896553:T:A	rs1003273427	T	A	T	Sox3.mouse_HMG_3	7	1	+	2.867487076633781	-2.8360286957938747	GATCAAATGCATTCATC
chr8	126911694	126911695	chr8:126911695:A:G	rs71520605	A	G	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr8	126960541	126960542	chr8:126960542:G:A	rs71510337	G	A	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	127038530	127038531	chr8:127038531:G:C	rs186345525	G	C	G	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr8	127049208	127049209	chr8:127049209:G:T	rs60473734	G	T	G	Sox3.mouse_HMG_3	5	1	+	2.3087725983284733	2.1901668559206264	AATTAGTGCCATTCAAA
chr8	127219699	127219700	chr8:127219700:A:G	rs16902043	A	G	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr8	127252391	127252392	chr8:127252392:G:T	rs147551546	G	T	G	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr8	127262776	127262777	chr8:127262777:C:T	rs58218589	C	T	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr8	127564089	127564090	chr8:127564090:G:C	rs10956374	G	C	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr8	127639069	127639070	chr8:127639070:A:G	rs7463487	A	G	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr8	127647311	127647312	chr8:127647312:T:C	rs56397659	T	C	T	Sox3.mouse_HMG_3	15	1	+	3.570896571794142	-1.1434968399209264	CATGATTTCTACTCATG
chr8	127697358	127697359	chr8:127697359:T:A	rs17186646	T	A	T	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	127706197	127706198	chr8:127706198:A:G	rs17186926	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr8	127713668	127713669	chr8:127713669:T:A	chr8:127713669:T:A	T	A	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr8	127713708	127713709	chr8:127713709:C:G	rs16902340	C	G	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr8	127726003	127726004	chr8:127726004:G:A	rs149015821	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr8	128014406	128014407	chr8:128014407:T:C	rs10956406	T	C	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr8	128014409	128014410	chr8:128014410:C:T	rs80285978	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	128088692	128088693	chr8:128088693:T:C	rs141802416	T	C	T	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr8	128152951	128152952	chr8:128152952:T:G	rs1121946	T	G	T	Sox3.mouse_HMG_3	10	1	+	1.9171727633239308	2.0602736069646044	ATTGAATGATTTCCATG
chr8	128174178	128174179	chr8:128174179:A:G	rs7825733	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	128213255	128213256	chr8:128213256:A:G	rs11774172	A	G	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr8	128388851	128388852	chr8:128388852:C:A	rs16902853	C	A	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr8	128388887	128388888	chr8:128388888:G:T	rs1430293572	G	T	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr8	128424287	128424288	chr8:128424288:C:G	rs2138634	C	G	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr8	128424302	128424303	chr8:128424303:A:G	rs2138635	A	G	A	Sox3.mouse_HMG_3	14	1	+	2.6112851828297723	-3.770660983597139	TTAGAATTATATCCATA
chr8	128426431	128426432	chr8:128426432:G:T	rs60992854	G	T	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr8	128426772	128426773	chr8:128426773:T:A	rs12544478	T	A	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr8	128426804	128426805	chr8:128426805:T:G	rs6470627	T	G	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr8	128429709	128429710	chr8:128429710:G:A	rs1356330	G	A	G	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr8	128463791	128463792	chr8:128463792:C:T	rs1356328	C	T	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr8	128524801	128524802	chr8:128524802:C:T	rs16903058	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr8	128557124	128557125	chr8:128557125:G:A	rs1561924	G	A	A	Sox3.mouse_HMG_3	9	1	-	3.293801532759775	3.301438209751521	GATCAATGGCAGTGATT
chr8	128842122	128842123	chr8:128842123:G:A	rs10956448	G	A	G	Sox3.mouse_HMG_3	9	1	-	7.335649775349113	7.343286452340859	TATAAATTCCAGTCAGA
chr8	128891204	128891205	chr8:128891205:A:C	rs140501772	A	C	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr8	129001724	129001725	chr8:129001725:C:T	rs7836274	C	T	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr8	129111551	129111552	chr8:129111552:C:T	rs12547572	C	T	T	Sox3.mouse_HMG_3	9	1	+	1.788965262158132	1.796601939149878	TTTGCTTTGCATTCATA
chr8	129245822	129245823	chr8:129245823:T:C	rs10099663	T	C	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr8	129252560	129252561	chr8:129252561:C:T	rs7814449	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	129299403	129299404	chr8:129299404:T:C	rs7006776	T	C	T	Sox3.mouse_HMG_3	12	1	+	4.252515375528239	-1.9403381918725269	GATGACTTGTATTAATT
chr8	129422659	129422660	chr8:129422660:A:G	rs115236524	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr8	129584706	129584707	chr8:129584707:C:T	rs75802373	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	129635738	129635739	chr8:129635739:T:G	rs34547718	T	G	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr8	129685379	129685380	chr8:129685380:A:C	rs372056454	A	C	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr8	129707874	129707875	chr8:129707875:T:C	rs10110842	T	C	T	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr8	130194968	130194969	chr8:130194969:C:T	rs80153538	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	130195732	130195733	chr8:130195733:G:A	rs11781752	G	A	A	Sox3.mouse_HMG_3	13	1	-	3.2875945394894237	-3.3196660709725956	TATTAATTACAGTCACT
chr8	130396319	130396320	chr8:130396320:T:C	rs11784953	T	C	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	130499735	130499736	chr8:130499736:G:A	rs28676679	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr8	130558790	130558791	chr8:130558791:C:G	rs115446112	C	G	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr8	130558830	130558831	chr8:130558831:C:T	rs146320297	C	T	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr8	130803063	130803064	chr8:130803064:C:T	rs550458880	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr8	130803086	130803087	chr8:130803087:A:G	rs12678910	A	G	A	Sox3.mouse_HMG_3	14	1	+	1.7829165823684867	-4.599029584058424	AATTACTTGCATTCAAA
chr8	130803587	130803588	chr8:130803588:T:C	rs4736688	T	C	C	Sox3.mouse_HMG_3	2	1	+	5.584407870234622	-1.0214712479963086	TATAAATTGCTTTCATA
chr8	130823672	130823673	chr8:130823673:C:T	rs263262	C	T	T	Sox3.mouse_HMG_3	8	1	+	7.922010403476753	7.659890658560647	TTTGAGTGCTATTCATT
chr8	130881350	130881351	chr8:130881351:G:C	rs10098660	G	C	C	Sox3.mouse_HMG_3	1	1	+	2.29818095811563	1.221451380697028	TGTGAATGATATTTCTG
chr8	131032387	131032388	chr8:131032388:A:T	rs558499875	A	T	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	131034690	131034691	chr8:131034691:G:A	rs67576008	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr8	131190032	131190033	chr8:131190033:A:G	rs28685638	A	G	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	131404645	131404646	chr8:131404646:G:A	rs11774542	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr8	131446022	131446023	chr8:131446023:A:G	rs1430314	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr8	131555670	131555671	chr8:131555671:G:A	rs461349	G	A	G	Sox3.mouse_HMG_3	0	1	-	2.3109900139754673	3.7658606593123336	CAGAAATGCCATTCAAG
chr8	132042949	132042950	chr8:132042950:A:G	rs2878264	A	G	A	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr8	132471076	132471077	chr8:132471077:T:C	rs72723116	T	C	T	Sox3.mouse_HMG_3	5	1	+	1.7101234587818757	1.7101234587818757	GGTGATTTACATGCATG
chr8	132489624	132489625	chr8:132489625:G:C	rs10091289	G	C	G	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr8	132907799	132907800	chr8:132907800:T:G	rs116981332	T	G	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr8	133182734	133182735	chr8:133182735:A:T	rs115812147	A	T	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr8	133182772	133182773	chr8:133182773:G:T	rs117951453	G	T	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr8	133182787	133182788	chr8:133182788:G:A	rs147596449	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr8	133248104	133248105	chr8:133248105:T:C	rs2233337	T	C	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr8	133266736	133266737	chr8:133266737:C:G	rs3779932	C	G	C	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr8	133442226	133442227	chr8:133442227:G:A	rs4736453	G	A	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr8	133579855	133579856	chr8:133579856:T:G	rs72722104	T	G	T	Sox3.mouse_HMG_3	10	1	-	3.992297017840281	-2.7587544673411895	GATTAAAGCTATTCATT
chr8	133621144	133621145	chr8:133621145:T:C	rs77247725	T	C	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr8	133645679	133645680	chr8:133645680:C:T	rs66498156	C	T	C	Sox3.mouse_HMG_3	4	1	+	3.9541059694947007	4.097206813135374	TATGCATTTTTTTCATG
chr8	133695797	133695798	chr8:133695798:G:C	rs28541902	G	C	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr8	133872399	133872400	chr8:133872400:A:G	rs16905008	A	G	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr8	134086012	134086013	chr8:134086013:T:C	rs1457461	T	C	c	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	134401310	134401311	chr8:134401311:G:A	rs3935426	G	A	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr8	134512400	134512401	chr8:134512401:T:C	rs17761176	T	C	T	Sox3.mouse_HMG_3	1	1	-	3.8017780606227425	0.7016481241854504	GATGAATGATGTCCATC
chr8	134546057	134546058	chr8:134546058:T:C	rs1530318	T	C	T	Sox3.mouse_HMG_3	4	1	-	3.5462241897852054	-2.836592538208863	TATTAATGTTAGTAATA
chr8	134790648	134790649	chr8:134790649:G:A	rs7831733	G	A	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr8	134904019	134904020	chr8:134904020:G:A	rs35271963	G	A	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr8	134949582	134949583	chr8:134949583:A:G	rs7016799	A	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr8	135031175	135031176	chr8:135031176:G:T	rs73367350	G	T	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr8	135056199	135056200	chr8:135056200:T:G	rs1904863	T	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	135191332	135191333	chr8:135191333:C:T	rs112860820	C	T	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr8	135556448	135556449	chr8:135556449:T:A	rs10094413	T	A	T	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr8	135681276	135681277	chr8:135681277:G:A	rs61371808	G	A	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr8	135942465	135942466	chr8:135942466:T:C	rs1375256	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr8	136285356	136285357	chr8:136285357:A:G	rs13250040	A	G	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr8	136303550	136303551	chr8:136303551:C:T	rs869061	C	T	C	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr8	136313261	136313262	chr8:136313262:G:A	rs71530154	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr8	136387678	136387679	chr8:136387679:T:C	rs2317933	T	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr8	137029900	137029901	chr8:137029901:A:G	rs72736377	A	G	A	Sox3.mouse_HMG_3	12	1	-	1.779486893671593	-4.413366673729174	GTTGAATATTACTCATT
chr8	137123692	137123693	chr8:137123693:A:G	rs7827430	A	G	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr8	137215294	137215295	chr8:137215295:C:T	rs73389843	C	T	T	Sox3.mouse_HMG_3	11	1	-	14.041555696246927	9.391380970440789	TATGAATTACAGTCATC
chr8	137335012	137335013	chr8:137335013:T:C	rs72723724	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr8	137337138	137337139	chr8:137337139:A:G	rs10089961	A	G	A	Sox3.mouse_HMG_3	11	1	-	0.027699237599734916	-6.05691158850221	GATGAGTGGTATGCCTG
chr8	137591934	137591935	chr8:137591935:A:G	rs4909374	A	G	G	Sox3.mouse_HMG_3	14	1	+	8.537051841554092	2.1551056751271807	AATGAATGGCTTTCAGA
chr8	137789169	137789170	chr8:137789170:G:C	rs10094281	G	C	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr8	137873560	137873561	chr8:137873561:C:G	rs4909711	C	G	G	Sox3.mouse_HMG_3	11	1	-	3.355017844259544	-1.2951568815465935	GCGGAATTCCAGTCAAG
chr8	138171608	138171609	chr8:138171609:A:T	rs10103726	A	T	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr8	138415790	138415791	chr8:138415791:G:T	rs35925122	G	T	G	Sox3.mouse_HMG_3	13	1	+	5.031487368178095	5.031487368178095	AATGAATGACAGTGACA
chr8	138601382	138601383	chr8:138601383:C:T	rs11166828	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr8	138772551	138772552	chr8:138772552:C:T	rs369128844	C	T	C	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	138848975	138848976	chr8:138848976:A:G	rs60991024	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr8	139019075	139019076	chr8:139019076:G:A	rs10105935	G	A	G	Sox3.mouse_HMG_3	12	1	+	2.1346251833794314	2.4028891699741113	AATGAATTCTATGCTAG
chr8	139019076	139019077	chr8:139019077:C:T	rs10106822	C	T	C	Sox3.mouse_HMG_3	13	1	+	2.1346251833794314	-4.472635427082588	AATGAATTCTATGCTAG
chr8	139153232	139153233	chr8:139153233:T:C	rs7460675	T	C	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr8	139394621	139394622	chr8:139394622:A:G	rs73723243	A	G	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr8	139598925	139598926	chr8:139598926:T:C	rs2447340	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr8	139598932	139598933	chr8:139598933:A:G	rs2545435	A	G	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr8	139650066	139650067	chr8:139650067:C:T	rs882555	C	T	C	Sox3.mouse_HMG_3	0	1	+	0.4652652338081247	1.92013587914499	CAGGAATGCCAGCCAAG
chr8	139712798	139712799	chr8:139712799:A:G	rs9324513	A	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr8	139830942	139830943	chr8:139830943:C:G	rs10094108	C	G	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	139830955	139830956	chr8:139830956:C:T	rs73364148	C	T	C	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr8	139924892	139924893	chr8:139924893:A:G	rs113672957	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr8	139924900	139924901	chr8:139924901:T:C	rs2067588	T	C	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr8	140004761	140004762	chr8:140004762:G:C	rs9324516	G	C	G	Sox3.mouse_HMG_3	8	1	-	5.250994489411185	5.693777158089117	CTTGATTTCTAGTCATG
chr8	140066098	140066099	chr8:140066099:G:A	rs883613	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr8	140149852	140149853	chr8:140149853:A:G	rs13252679	A	G	a	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr8	140214752	140214753	chr8:140214753:C:T	rs4397386	C	T	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	140299665	140299666	chr8:140299666:C:T	rs11777506	C	T	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr8	140302655	140302656	chr8:140302656:G:A	rs78320919	G	A	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr8	140507167	140507168	chr8:140507168:G:C	rs145498786	G	C	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr8	141127931	141127932	chr8:141127932:C:T	rs1024879655	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr8	141164981	141164982	chr8:141164982:G:C	rs112012538	G	C	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr8	141199443	141199444	chr8:141199444:C:T	rs6578153	C	T	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr8	141289411	141289412	chr8:141289412:A:T	rs4961355	A	T	A	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr8	141403898	141403899	chr8:141403899:A:G	rs181018241	A	G	A	Sox3.mouse_HMG_3	1	1	+	3.3234008472360026	0.22327091079871086	AATAATTTTTATTCATT
chr8	141439524	141439525	chr8:141439525:C:T	rs546361539	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr8	141489514	141489515	chr8:141489515:C:A	rs12547132	C	A	C	Sox3.mouse_HMG_3	3	1	-	3.011890381183	-3.894604103331715	GAAGAAGGACATTCAGA
chr8	141520610	141520611	chr8:141520611:A:G	rs873225	A	G	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr8	141865083	141865084	chr8:141865084:C:T	rs79431719	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr8	141868645	141868646	chr8:141868646:A:G	rs62512166	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr8	142119928	142119929	chr8:142119929:G:A	rs6986562	G	A	A	Sox3.mouse_HMG_3	3	1	+	3.2033570591246523	-2.5782078284045773	GATGAATGCCAATAAGA
chr8	142245459	142245460	chr8:142245460:A:G	rs4976983	A	G	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr8	142357153	142357154	chr8:142357154:G:A	rs10091919	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	142357188	142357189	chr8:142357189:A:T	rs35850763	A	T	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr8	142372406	142372407	chr8:142372407:G:A	rs75972019	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr8	142762832	142762833	chr8:142762833:G:A	rs2717556	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr8	142843957	142843958	chr8:142843958:A:G	rs56400819	A	G	g	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr8	143059195	143059196	chr8:143059196:A:G	rs6991866	A	G	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr8	143187028	143187029	chr8:143187029:A:T	rs10112851	A	T	T	Sox3.mouse_HMG_3	12	1	-	1.5936256803048312	-4.519185179422399	GAGGAACGACAGTCAAG
chr8	143350242	143350243	chr8:143350243:A:G	rs2931709	A	G	G	Sox3.mouse_HMG_3	4	1	+	1.0824207674665558	-5.300395960527512	CAAGAATGACAGGCAAA
chr8	144010324	144010325	chr8:144010325:T:C	rs11136252	T	C	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr8	144587393	144587394	chr8:144587394:T:C	rs115550492	T	C	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr8	144720651	144720652	chr8:144720652:T:C	rs7004029	T	C	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr8	144790363	144790364	chr8:144790364:C:T	rs1060859	C	T	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr9	46306	46307	chr9:46307:T:C	rs62531204	T	C	.	Sox3.mouse_HMG_3	0	1	+	4.458675454898187	3.0038048095613226	TATGTATTTCATTCTTG
chr9	206131	206132	chr9:206132:A:C	rs10757083	A	C	.	Sox3.mouse_HMG_3	4	1	+	3.718720237010209	-3.031821271109176	ATTGAAAGTTATTCAGT
chr9	367242	367243	chr9:367243:A:G	rs79813893	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr9	439101	439102	chr9:439102:G:C	rs10733508	G	C	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr9	479156	479157	chr9:479157:G:A	rs10974741	G	A	A	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr9	479586	479587	chr9:479587:G:C	rs10815059	G	C	G	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr9	612356	612357	chr9:612357:G:T	rs10115504	G	T	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr9	649749	649750	chr9:649750:C:T	rs2031175	C	T	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr9	693023	693024	chr9:693024:T:G	rs1323260	T	G	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr9	751195	751196	chr9:751196:G:A	rs72693501	G	A	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr9	761360	761361	chr9:761361:T:G	rs73378519	T	G	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr9	808274	808275	chr9:808275:C:G	rs7047724	C	G	G	Sox3.mouse_HMG_3	8	1	-	1.5185931781957387	1.0758105095178068	TGTGAATCGTACTCATC
chr9	808281	808282	chr9:808282:C:A	rs7047731	C	A	C	Sox3.mouse_HMG_3	1	1	-	1.5185931781957387	1.6486463064439358	TGTGAATCGTACTCATC
chr9	883225	883226	chr9:883226:A:G	rs10977270	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr9	1202150	1202151	chr9:1202151:T:C	rs7048569	T	C	C	Sox3.mouse_HMG_3	4	1	+	0.9002208519866588	0.7571200083459846	AATGTATGGCAGTCTGG
chr9	1429098	1429099	chr9:1429099:A:C	rs12380797	A	C	A	Sox3.mouse_HMG_3	2	1	-	4.6918359062621064	-2.0571440556094966	GATGAATTTCATTTTTA
chr9	1604961	1604962	chr9:1604962:C:T	rs702163	C	T	T	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr9	1838134	1838135	chr9:1838135:C:T	rs10124781	C	T	T	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr9	2109710	2109711	chr9:2109711:T:C	rs10114544	T	C	T	Sox3.mouse_HMG_3	11	1	+	5.428650946552065	-0.65595987954988	AAAAAATTACATTCATA
chr9	2241766	2241767	chr9:2241767:C:G	rs1408334	C	G	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr9	2241768	2241769	chr9:2241769:T:C	chr9:2241769:T:C	T	C	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr9	2241775	2241776	chr9:2241776:C:T	rs74490597	C	T	C	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr9	2241784	2241785	chr9:2241785:G:C	rs138659811	G	C	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr9	2254680	2254681	chr9:2254681:T:G	rs7031590	T	G	G	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr9	2340999	2341000	chr9:2341000:T:C	rs16938472	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr9	2389345	2389346	chr9:2389346:C:T	rs56252970	C	T	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr9	2389358	2389359	chr9:2389359:A:G	rs1256950186	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr9	2481436	2481437	chr9:2481437:T:C	rs7873108	T	C	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr9	2624594	2624595	chr9:2624595:T:G	rs35676099	T	G	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr9	2624604	2624605	chr9:2624605:C:G	rs34044487	C	G	C	Sox3.mouse_HMG_3	8	1	+	2.3219479780477794	2.7647306467257113	TTTGAGAGCTATTCATA
chr9	2798582	2798583	chr9:2798583:G:A	rs7042249	G	A	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr9	2798611	2798612	chr9:2798612:T:C	rs7031607	T	C	T	Sox3.mouse_HMG_3	15	1	+	4.441541934334619	-0.2728514773804491	GTTTAATTATAGTCATC
chr9	2925346	2925347	chr9:2925347:C:G	rs10968985	C	G	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr9	2968043	2968044	chr9:2968044:C:A	rs3858035	C	A	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr9	3124721	3124722	chr9:3124722:A:C	rs57954499	A	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr9	3150351	3150352	chr9:3150352:G:A	rs10970330	G	A	G	Sox3.mouse_HMG_3	9	1	-	0.8439788540385735	0.8516155310303204	TCTGAAATGCATGCATG
chr9	3194612	3194613	chr9:3194613:C:A	rs12236127	C	A	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr9	3308708	3308709	chr9:3308709:A:G	rs2986699	A	G	G	Sox3.mouse_HMG_3	6	1	+	1.848461727660516	1.848461727660516	AATGAAACCTATTCAGA
chr9	3740759	3740760	chr9:3740760:A:G	rs112653204	A	G	A	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr9	3827119	3827120	chr9:3827120:A:C	rs1331260	A	C	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr9	3827560	3827561	chr9:3827561:G:C	rs4997836	G	C	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr9	3859603	3859604	chr9:3859604:C:T	rs16919799	C	T	T	Sox3.mouse_HMG_3	8	1	-	5.890292777295283	5.26717613011747	GATGAATGGGAGTGATG
chr9	3885058	3885059	chr9:3885059:T:C	rs12235645	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr9	3946606	3946607	chr9:3946607:T:A	rs57862843	T	A	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr9	3958155	3958156	chr9:3958156:C:T	rs150657653	C	T	C	Sox3.mouse_HMG_3	3	1	-	0.5612505644838567	-5.2203143230453755	TGTGTATGGCAGACATT
chr9	3961491	3961492	chr9:3961492:G:A	rs635171	G	A	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr9	4005057	4005058	chr9:4005058:G:T	rs146737590	G	T	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr9	4163334	4163335	chr9:4163335:T:C	rs10448238	T	C	T	Sox3.mouse_HMG_3	1	1	-	10.133795723128003	7.033665786690709	GATGAATTTCAGACATA
chr9	4206768	4206769	chr9:4206769:A:G	rs6476824	A	G	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	4209370	4209371	chr9:4209371:T:C	rs7034559	T	C	T	Sox3.mouse_HMG_3	10	1	-	4.537937685172346	-2.0700129563684513	CATGAATGCCAGTAACA
chr9	4306644	4306645	chr9:4306645:C:T	rs1571584	C	T	C	Sox3.mouse_HMG_3	3	1	-	5.737599828430362	-0.04396505909887005	TCTGAATGCCATTCCAG
chr9	4339360	4339361	chr9:4339361:T:G	rs1009740243	T	G	T	Sox3.mouse_HMG_3	15	1	+	11.821571588648553	8.69898077755531	GATGAATTGTGTTCATG
chr9	4339418	4339419	chr9:4339419:T:C	rs144988631	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr9	4339461	4339462	chr9:4339462:C:G	rs768225813	C	G	C	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr9	4600236	4600237	chr9:4600237:C:A	rs10974640	C	A	A	Sox3.mouse_HMG_3	7	1	-	0.7682506212527191	-0.08178232097735227	GTTGAATGTCTGTGATA
chr9	4600263	4600264	chr9:4600264:C:T	rs10974641	C	T	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr9	4654144	4654145	chr9:4654145:C:T	rs7037867	C	T	t	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr9	4654154	4654155	chr9:4654155:T:C	rs7026191	T	C	t	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	4748721	4748722	chr9:4748722:A:C	rs117684106	A	C	A	Sox3.mouse_HMG_3	7	1	-	3.862959798390161	4.712992740620233	GATGAATTGTCGGCATG
chr9	4748723	4748724	chr9:4748724:T:C	rs117064530	T	C	T	Sox3.mouse_HMG_3	5	1	-	3.862959798390161	-2.6258751236807027	GATGAATTGTCGGCATG
chr9	4753901	4753902	chr9:4753902:C:T	rs34639258	C	T	T	Sox3.mouse_HMG_3	11	1	-	1.2415533329592583	-3.4086213928468796	TTTCACTGGCAGTCATG
chr9	4826632	4826633	chr9:4826633:T:C	rs149826988	T	C	T	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr9	4894105	4894106	chr9:4894106:T:G	rs16922251	T	G	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr9	4932652	4932653	chr9:4932653:T:G	rs7034721	T	G	G	Sox3.mouse_HMG_3	14	1	-	3.131250234530907	-3.2506959318960043	CATGGATGGTAGTGATG
chr9	5388265	5388266	chr9:5388266:G:C	rs10815202	G	C	g	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr9	5688386	5688387	chr9:5688387:C:A	rs62557384	C	A	C	Sox3.mouse_HMG_3	7	1	-	7.764508084448821	6.914475142218748	AATGAAGGCCAGTCATC
chr9	5872530	5872531	chr9:5872531:A:G	rs10115023	A	G	A	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr9	5884563	5884564	chr9:5884564:C:T	rs10815300	C	T	C	Sox3.mouse_HMG_3	7	1	-	1.9978926106087316	-4.555656104048995	GATGAAGGCCAGTCCAG
chr9	5896222	5896223	chr9:5896223:C:T	rs117685531	C	T	C	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr9	5976854	5976855	chr9:5976855:A:G	rs10975382	A	G	A	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr9	6054793	6054794	chr9:6054794:C:T	rs72699150	C	T	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr9	6069063	6069064	chr9:6069064:G:A	chr9:6069064:G:A	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr9	6566601	6566602	chr9:6566602:C:A	rs7039182	C	A	A	Sox3.mouse_HMG_3	16	1	-	4.490585683665457	3.303656167460435	CCGGAATGTTAGTCATG
chr9	6566615	6566616	chr9:6566616:C:T	rs75477221	C	T	C	Sox3.mouse_HMG_3	2	1	-	4.490585683665457	5.512236931197438	CCGGAATGTTAGTCATG
chr9	6827315	6827316	chr9:6827316:A:G	rs7861898	A	G	A	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr9	6869286	6869287	chr9:6869287:C:G	rs371086531	C	G	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr9	6931467	6931468	chr9:6931468:T:A	rs62533769	T	A	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr9	6997638	6997639	chr9:6997639:A:G	rs946929	A	G	a	Sox3.mouse_HMG_3	1	1	-	2.4197495648013034	1.2129668591345042	ATTGACTGTTAGTCAAC
chr9	7033694	7033695	chr9:7033695:T:A	rs76111327	T	A	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr9	7081529	7081530	chr9:7081530:A:G	rs544141357	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr9	7129414	7129415	chr9:7129415:C:G	rs7022136	C	G	G	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr9	7165945	7165946	chr9:7165946:A:G	rs10815533	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr9	7204854	7204855	chr9:7204855:T:A	rs2770764	T	A	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr9	7209214	7209215	chr9:7209215:A:G	rs7047667	A	G	A	Sox3.mouse_HMG_3	9	1	-	5.933420999400322	5.925784322408576	TATGAACTCTATTCAGC
chr9	7289444	7289445	chr9:7289445:A:G	rs10976180	A	G	A	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr9	7341119	7341120	chr9:7341120:G:T	rs74544832	G	T	G	Sox3.mouse_HMG_3	3	1	+	0.7367287553517046	-6.16976572916301	TCTGCGTTGCATTCATG
chr9	7341122	7341123	chr9:7341123:T:G	rs6477187	T	G	T	Sox3.mouse_HMG_3	6	1	+	0.7367287553517046	-6.014322729829767	TCTGCGTTGCATTCATG
chr9	7341137	7341138	chr9:7341138:G:A	rs6477188	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr9	7445626	7445627	chr9:7445627:C:G	rs2997549	C	G	C	Sox3.mouse_HMG_3	3	1	-	1.652570280710763	-5.0969204549942875	AGTGAACGCCATTTATA
chr9	7467488	7467489	chr9:7467489:A:G	rs114190297	A	G	A	Sox3.mouse_HMG_3	5	1	-	0.6849944664944825	0.6849944664944825	AATGATTGTCTGTCAAG
chr9	8226642	8226643	chr9:8226643:A:G	rs10815793	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	8254634	8254635	chr9:8254635:C:A	rs7872805	C	A	C	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr9	8254652	8254653	chr9:8254653:C:T	rs7872809	C	T	T	Sox3.mouse_HMG_3	8	1	-	0.739058175558529	0.1159415283807157	CAAGAAATGTAGTCATC
chr9	8285206	8285207	chr9:8285207:T:A	rs7865119	T	A	A	Sox3.mouse_HMG_3	10	1	-	7.888591058296334	1.1375395731148632	AATGAATGCCAGGCAAA
chr9	8365210	8365211	chr9:8365211:G:A	rs78834322	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr9	8396954	8396955	chr9:8396955:C:T	rs72691051	C	T	T	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr9	8437487	8437488	chr9:8437488:C:T	rs10977105	C	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr9	8451190	8451191	chr9:8451191:G:A	rs10815878	G	A	A	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr9	8494548	8494549	chr9:8494549:C:A	rs34599557	C	A	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr9	8495755	8495756	chr9:8495756:T:C	rs7025468	T	C	T	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr9	8585153	8585154	chr9:8585154:T:C	rs554592132	T	C	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr9	8720392	8720393	chr9:8720393:T:C	rs10977260	T	C	T	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr9	8734233	8734234	chr9:8734234:C:A	rs115804274	C	A	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr9	8777670	8777671	chr9:8777671:A:G	rs10116829	A	G	A	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr9	8906088	8906089	chr9:8906089:A:G	rs10759015	A	G	A	Sox3.mouse_HMG_3	7	1	-	0.7772485971900627	-4.6261625827872574	CATTCATTGCATTCAAG
chr9	8937477	8937478	chr9:8937478:C:T	rs10511514	C	T	C	Sox3.mouse_HMG_3	7	1	-	1.6465743432833269	-4.906974371374401	GATTTATGACAGTCATC
chr9	8961551	8961552	chr9:8961552:A:C	rs76184457	A	C	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr9	9170586	9170587	chr9:9170587:G:A	rs12342064	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr9	9468903	9468904	chr9:9468904:T:C	rs17831559	T	C	T	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr9	9745529	9745530	chr9:9745530:C:T	rs2761701	C	T	T	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr9	9913443	9913444	chr9:9913444:C:T	rs72692734	C	T	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr9	9943039	9943040	chr9:9943040:T:C	rs16930650	T	C	T	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr9	9943059	9943060	chr9:9943060:T:C	rs114949994	T	C	T	Sox3.mouse_HMG_3	6	1	+	0.15501711680842978	-6.452933524732366	GCTGGATGTCAGTCTTA
chr9	10026755	10026756	chr9:10026756:C:T	rs78494766	C	T	c	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr9	10112765	10112766	chr9:10112766:C:T	rs2890901	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr9	10174316	10174317	chr9:10174317:C:T	rs35968521	C	T	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr9	10232976	10232977	chr9:10232977:C:G	rs1322140	C	G	G	Sox3.mouse_HMG_3	11	1	-	4.6947714967095795	0.04459677090344094	GTTGAATGCCAGTGAGG
chr9	10827066	10827067	chr9:10827067:G:C	rs10809203	G	C	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr9	11033227	11033228	chr9:11033228:T:C	rs2151663	T	C	T	Sox3.mouse_HMG_3	16	1	+	4.499058074475327	3.632131335003048	TTTGAATTGTATTCCGT
chr9	11097561	11097562	chr9:11097562:T:C	rs2382262	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr9	11400205	11400206	chr9:11400206:C:T	rs62527769	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr9	11537934	11537935	chr9:11537935:T:C	rs1443384	T	C	T	Sox3.mouse_HMG_3	5	1	-	4.586186016109904	-1.9026489059609601	TATAAATGTTTTTCATT
chr9	11566760	11566761	chr9:11566761:G:A	rs62553747	G	A	G	Sox3.mouse_HMG_3	16	1	+	0.8834054646044012	0.8474650081518755	CATTAATGCCATCCAGG
chr9	11606347	11606348	chr9:11606348:T:C	rs10511567	T	C	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr9	11704646	11704647	chr9:11704647:G:C	rs10960112	G	C	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr9	11704696	11704697	chr9:11704697:T:C	rs13300485	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	11962622	11962623	chr9:11962623:T:A	rs73646822	T	A	t	Sox3.mouse_HMG_3	5	1	-	2.1301895395062376	-4.477251124972472	AACCAATGTTATTCAAG
chr9	12681640	12681641	chr9:12681641:G:C	rs10738288	G	C	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr9	12714215	12714216	chr9:12714216:G:C	rs11829	G	C	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr9	12738641	12738642	chr9:12738642:C:T	rs970945	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr9	12775691	12775692	chr9:12775692:T:A	chr9:12775692:T:A	T	A	T	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr9	12980419	12980420	chr9:12980420:T:C	rs71507355	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr9	13092284	13092285	chr9:13092285:C:T	rs10118379	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr9	13312370	13312371	chr9:13312371:A:G	rs10961020	A	G	A	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr9	13478523	13478524	chr9:13478524:G:A	rs10961079	G	A	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr9	13750430	13750431	chr9:13750431:A:G	rs10738340	A	G	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr9	13787756	13787757	chr9:13787757:G:C	rs181053411	G	C	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr9	13993660	13993661	chr9:13993661:C:T	rs72715836	C	T	C	Sox3.mouse_HMG_3	9	1	+	1.8613489049979104	1.8689855819896564	ACTGAATTGCATTCTGC
chr9	13993673	13993674	chr9:13993674:C:T	rs1885430	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr9	14008544	14008545	chr9:14008545:C:A	rs78694473	C	A	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr9	14012182	14012183	chr9:14012183:T:C	rs7848012	T	C	T	Sox3.mouse_HMG_3	8	1	-	1.6641248735677692	2.2872415207455825	TATGAATGATAGTTGAA
chr9	14089528	14089529	chr9:14089529:A:G	rs10961378	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr9	14096026	14096027	chr9:14096027:T:G	rs186244690	T	G	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr9	14244413	14244414	chr9:14244414:T:C	rs1322986	T	C	T	Sox3.mouse_HMG_3	2	1	+	2.2838816191618356	-4.321997499069097	AATGAGAGACATTCAAA
chr9	14412075	14412076	chr9:14412076:C:G	rs4741373	C	G	G	Sox3.mouse_HMG_3	3	1	-	1.5544942566943256	-5.194996479010723	GCTGAAAGTCAATCATG
chr9	14416123	14416124	chr9:14416124:A:C	rs16931734	A	C	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr9	14416159	14416160	chr9:14416160:C:A	rs56236655	C	A	A	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr9	14487857	14487858	chr9:14487858:G:C	rs13288827	G	C	G	Sox3.mouse_HMG_3	0	1	+	1.0498107858808254	-0.6739807132557931	GAAGGATTTCAGTCAGG
chr9	14602817	14602818	chr9:14602818:G:C	rs10961610	G	C	G	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr9	14620926	14620927	chr9:14620927:G:C	rs1343572	G	C	C	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr9	14671209	14671210	chr9:14671210:C:T	rs11793517	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr9	15077805	15077806	chr9:15077806:T:C	rs10810339	T	C	T	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr9	15077815	15077816	chr9:15077816:T:C	rs10961866	T	C	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr9	15116270	15116271	chr9:15116271:A:G	rs2800606	A	G	G	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr9	15249051	15249052	chr9:15249052:T:C	rs72700653	T	C	T	Sox3.mouse_HMG_3	0	1	+	6.530592578402725	5.075721933065859	TATGACTTTTATTCAAC
chr9	15357728	15357729	chr9:15357729:A:C	rs641274	A	C	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr9	15622521	15622522	chr9:15622522:G:C	rs7859780	G	C	C	Sox3.mouse_HMG_3	0	1	-	3.195386813302445	4.919178312439064	CAGTAATGTTATTCATG
chr9	15783267	15783268	chr9:15783268:C:T	rs4146291	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr9	15842972	15842973	chr9:15842973:C:A	rs7039881	C	A	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr9	15882616	15882617	chr9:15882617:T:A	rs9407671	T	A	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr9	15882647	15882648	chr9:15882648:A:G	rs2995025	A	G	A	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr9	16058547	16058548	chr9:16058548:G:A	rs76372267	G	A	G	Sox3.mouse_HMG_3	14	1	+	2.4321159048199554	8.814062071246866	AATGAATTTCAGTGGTA
chr9	16103334	16103335	chr9:16103335:C:T	rs867780	C	T	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr9	16105088	16105089	chr9:16105089:A:G	rs55776480	A	G	A	Sox3.mouse_HMG_3	12	1	-	2.1686954181816036	-4.024158149219162	AAAGAATTTTAGTCTTT
chr9	16389000	16389001	chr9:16389001:T:C	rs9406639	T	C	C	Sox3.mouse_HMG_3	10	1	-	0.7391247837573462	-5.868825857783451	CATGGCTTTCATTCAAG
chr9	16389007	16389008	chr9:16389008:C:T	rs9407771	C	T	C	Sox3.mouse_HMG_3	3	1	-	0.7391247837573462	-5.042440103771886	CATGGCTTTCATTCAAG
chr9	16450869	16450870	chr9:16450870:G:A	rs114391726	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr9	16522752	16522753	chr9:16522753:T:G	rs139372611	T	G	T	Sox3.mouse_HMG_3	12	1	+	0.9198254925337461	-5.461249353788164	GAAGAATGTTCTTCAGC
chr9	16689292	16689293	chr9:16689293:C:T	rs10810590	C	T	T	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr9	16720421	16720422	chr9:16720422:G:C	rs12378283	G	C	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr9	16802119	16802120	chr9:16802120:T:C	rs12345910	T	C	T	Sox3.mouse_HMG_3	1	1	-	3.596604345936671	0.49647440949937716	AATGAATGATAGCTATG
chr9	16810348	16810349	chr9:16810349:C:T	rs11788776	C	T	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr9	16872324	16872325	chr9:16872325:G:A	rs11789875	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr9	16986113	16986114	chr9:16986114:C:G	rs7029491	C	G	C	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr9	17343117	17343118	chr9:17343118:A:G	rs10810766	A	G	A	Sox3.mouse_HMG_3	5	1	+	5.784835757505665	-0.7039991645651991	GATGAAGGATACTCATA
chr9	17636210	17636211	chr9:17636211:A:G	rs2224450	A	G	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr9	17636246	17636247	chr9:17636247:C:T	rs12553667	C	T	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr9	18275055	18275056	chr9:18275056:A:G	rs749531633	A	G	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr9	18298730	18298731	chr9:18298731:G:C	rs10810947	G	C	G	Sox3.mouse_HMG_3	16	1	+	0.6481572095690862	-1.4056990461082146	AATTAGTGTCAGTCAAG
chr9	18474822	18474823	chr9:18474823:T:C	rs17206601	T	C	T	Sox3.mouse_HMG_3	0	1	-	1.985158697094342	2.8104425982406864	AATGACTTGCAGTAATT
chr9	18500950	18500951	chr9:18500951:A:G	rs2149875	A	G	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr9	18795868	18795869	chr9:18795869:A:T	rs10116545	A	T	A	Sox3.mouse_HMG_3	10	1	+	7.165814450467523	0.41476296528605283	TGTGAATTATAATCATT
chr9	18911629	18911630	chr9:18911630:G:T	rs7848255	G	T	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr9	18911644	18911645	chr9:18911645:T:C	rs570702602	T	C	T	Sox3.mouse_HMG_3	4	1	-	0.7815687683392298	-5.601247959654838	GAAGAATGGCATGCGTG
chr9	18914339	18914340	chr9:18914340:T:C	rs10811062	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr9	18970357	18970358	chr9:18970358:A:G	rs7872487	A	G	A	Sox3.mouse_HMG_3	5	1	-	1.5645907745492122	1.5645907745492122	ATTGATTGTTATTTATG
chr9	18970362	18970363	chr9:18970363:T:G	rs7858792	T	G	G	Sox3.mouse_HMG_3	0	1	-	1.5645907745492122	0.6660831765589372	ATTGATTGTTATTTATG
chr9	19231372	19231373	chr9:19231373:C:T	rs1293417032	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr9	19266958	19266959	chr9:19266959:C:T	rs7873748	C	T	-	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr9	19492974	19492975	chr9:19492975:A:G	rs10117909	A	G	A	Sox3.mouse_HMG_3	10	1	+	4.828055526101805	-1.7798951154389933	CATGAATGGCATAGATG
chr9	19755035	19755036	chr9:19755036:A:G	rs11788522	A	G	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr9	19989446	19989447	chr9:19989447:A:G	rs7028764	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr9	20324849	20324850	chr9:20324850:A:G	rs12341556	A	G	A	Sox3.mouse_HMG_3	9	1	-	13.431703137764918	13.42406646077317	AATGAATGTTATTCAAC
chr9	20349443	20349444	chr9:20349444:C:A	rs12555173	C	A	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr9	20553479	20553480	chr9:20553480:T:G	rs148303347	T	G	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr9	20553513	20553514	chr9:20553514:C:A	rs147061149	C	A	C	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr9	20595317	20595318	chr9:20595318:C:G	rs1291635	C	G	g	Sox3.mouse_HMG_3	10	1	+	2.3137052709943973	2.4568061146350706	AGTGAATCGTCTTCATA
chr9	20833244	20833245	chr9:20833245:A:G	rs10811414	A	G	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr9	21094900	21094901	chr9:21094901:T:G	rs7849981	T	G	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr9	21179010	21179011	chr9:21179011:T:A	rs149075535	T	A	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr9	21250168	21250169	chr9:21250169:G:A	rs10964935	G	A	G	Sox3.mouse_HMG_3	13	1	-	0.026958576606134654	-6.580302033855885	GATGAAGTTCAGTCTGG
chr9	21450913	21450914	chr9:21450914:T:G	rs112949152	T	G	T	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr9	21506318	21506319	chr9:21506319:A:G	rs4258083	A	G	G	Sox3.mouse_HMG_3	0	1	-	1.429391847507073	-0.025478797829791455	TATGACTTGCAGTCTAA
chr9	21506328	21506329	chr9:21506329:G:A	rs7856413	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr9	21555283	21555284	chr9:21555284:T:C	rs9298816	T	C	C	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr9	21751962	21751963	chr9:21751963:A:G	rs1345027	A	G	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr9	22080537	22080538	chr9:22080538:A:G	rs73650041	A	G	G	Sox3.mouse_HMG_3	14	1	+	1.1923984644459038	-5.189547701981007	GATGAGTTCTAGTGAAG
chr9	22102165	22102166	chr9:22102166:C:T	rs7859727	C	T	T	Sox3.mouse_HMG_3	9	1	+	5.200581017771473	5.208217694763219	TCTGAATGACAGGCATT
chr9	22305654	22305655	chr9:22305655:T:C	rs10757306	T	C	C	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr9	22682877	22682878	chr9:22682878:G:T	rs605204	G	T	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr9	22792513	22792514	chr9:22792514:C:G	rs1823289	C	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr9	23622175	23622176	chr9:23622176:A:C	rs532349630	A	C	A	Sox3.mouse_HMG_3	1	1	+	2.8359975792101286	-1.3408619346457662	GAGGAAGTATAGTCATA
chr9	23643683	23643684	chr9:23643684:A:G	rs4977871	A	G	G	Sox3.mouse_HMG_3	5	1	+	2.8828894136500987	-3.605945508420765	GATGAAAGACTTTCAAG
chr9	23658215	23658216	chr9:23658216:A:C	rs10757443	A	C	A	Sox3.mouse_HMG_3	4	1	+	4.274090960952125	-2.4764505471672607	AGTGAAAGACAGTCAAG
chr9	23962339	23962340	chr9:23962340:T:C	rs10966151	T	C	T	Sox3.mouse_HMG_3	9	1	+	10.293642257232548	10.286005580240804	GGTGAATTCTAGTCAGA
chr9	24502720	24502721	chr9:24502721:C:T	rs549492648	C	T	C	Sox3.mouse_HMG_3	16	1	-	2.733932192334599	2.6979917358820735	TATACATTACATTCAAG
chr9	24912754	24912755	chr9:24912755:C:T	rs7849819	C	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr9	25449613	25449614	chr9:25449614:T:G	rs12001757	T	G	T	Sox3.mouse_HMG_3	2	1	+	1.0409057900470855	-5.708074171824517	TGTGAGTGCTCTTCATT
chr9	26457405	26457406	chr9:26457406:A:G	rs7867403	A	G	A	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr9	26686039	26686040	chr9:26686040:C:T	rs115352158	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr9	26956760	26956761	chr9:26956761:G:A	rs10967619	G	A	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr9	26956769	26956770	chr9:26956770:G:A	rs1541144	G	A	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr9	27095073	27095074	chr9:27095074:C:T	rs2782434	C	T	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr9	27292704	27292705	chr9:27292705:T:C	rs12337411	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr9	27368991	27368992	chr9:27368992:C:T	rs115239107	C	T	C	Sox3.mouse_HMG_3	0	1	+	1.1801426765661343	2.6350133219029996	CGTGAAAGATATTCACT
chr9	27374093	27374094	chr9:27374094:T:C	rs10120627	T	C	t	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr9	27467764	27467765	chr9:27467765:G:A	rs7873548	G	A	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr9	27483611	27483612	chr9:27483612:T:G	rs12350089	T	G	T	Sox3.mouse_HMG_3	5	1	-	2.512586868773705	-4.094853795705007	TAAGTATGTCATTCAAT
chr9	27588732	27588733	chr9:27588733:C:A	rs702231	C	A	C	Sox3.mouse_HMG_3	7	1	+	3.2599328092388076	2.9598282167884697	CATGAACCGTAGTCATG
chr9	27931107	27931108	chr9:27931108:C:T	rs77770529	C	T	C	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr9	27997340	27997341	chr9:27997341:C:T	rs1197936	C	T	T	Sox3.mouse_HMG_3	8	1	-	2.2313127734352003	1.6081961262573872	AATGAATGGCATTATAT
chr9	28025178	28025179	chr9:28025179:C:G	rs944648	C	G	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr9	28171929	28171930	chr9:28171930:G:A	rs7030408	G	A	G	Sox3.mouse_HMG_3	1	1	+	0.7139183920167198	3.814048328454012	GGAGAATGGCGTTCAGG
chr9	28396246	28396247	chr9:28396247:C:T	rs28409695	C	T	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr9	28396252	28396253	chr9:28396253:A:G	rs10968558	A	G	A	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr9	28582399	28582400	chr9:28582400:T:C	rs1996774	T	C	T	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr9	28603862	28603863	chr9:28603863:T:A	rs72715215	T	A	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr9	28619492	28619493	chr9:28619493:A:G	rs10968680	A	G	A	Sox3.mouse_HMG_3	16	1	-	5.757470193060468	4.890543453588188	AATTAATTACATTCAGT
chr9	29018855	29018856	chr9:29018856:G:A	rs2210558	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr9	29127578	29127579	chr9:29127579:C:T	rs1592173	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr9	29266225	29266226	chr9:29266226:T:G	rs12555430	T	G	T	Sox3.mouse_HMG_3	4	1	-	10.099809774507296	3.3492682663879076	CATGAATGTTCTTCATG
chr9	29284626	29284627	chr9:29284627:A:G	rs12237506	A	G	A	Sox3.mouse_HMG_3	7	1	-	1.508983522936449	-3.8944276570408696	CTTGTATTCTATTCAGC
chr9	29284646	29284647	chr9:29284647:C:G	rs10813042	C	G	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr9	29390808	29390809	chr9:29390809:T:G	rs58908949	T	G	G	Sox3.mouse_HMG_3	14	1	-	6.195807029073553	-0.18613913735335852	AATAAATTCCATTCAGC
chr9	29393202	29393203	chr9:29393203:C:T	rs117835806	C	T	C	Sox3.mouse_HMG_3	14	1	-	3.65097285214721	10.032919018574123	CATGAATGTGAGTCGTA
chr9	29393203	29393204	chr9:29393204:G:C	rs113560800	G	C	G	Sox3.mouse_HMG_3	13	1	-	3.65097285214721	-2.9562877583148097	CATGAATGTGAGTCGTA
chr9	29630410	29630411	chr9:29630411:T:A	rs4477117	T	A	a	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr9	29773715	29773716	chr9:29773716:C:T	rs10969370	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr9	29773730	29773731	chr9:29773731:A:G	rs568964873	A	G	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr9	30172170	30172171	chr9:30172171:T:C	rs117476674	T	C	T	Sox3.mouse_HMG_3	14	1	-	2.972448341245544	-3.409497825181367	ACTGAATTATATGCAAT
chr9	30247933	30247934	chr9:30247934:G:A	rs12339642	G	A	g	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr9	30584697	30584698	chr9:30584698:C:A	rs4645621	C	A	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr9	30592033	30592034	chr9:30592034:T:C	rs13300508	T	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr9	30646781	30646782	chr9:30646782:C:T	rs10969808	C	T	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr9	30692819	30692820	chr9:30692820:T:C	rs10122554	T	C	T	Sox3.mouse_HMG_3	15	1	+	0.6899702286221742	-4.024423183092894	GTTGAAATCCATGCATT
chr9	31090032	31090033	chr9:31090033:G:C	rs117454242	G	C	G	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr9	31211015	31211016	chr9:31211016:A:G	rs1360663	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr9	31322302	31322303	chr9:31322303:G:A	rs114187042	G	A	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr9	32633320	32633321	chr9:32633321:G:C	rs183134246	G	C	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr9	32865679	32865680	chr9:32865680:G:T	rs10971167	G	T	G	Sox3.mouse_HMG_3	3	1	+	3.253157655057152	-3.6533368294575617	GTTGAATTTTCTTCACA
chr9	32875174	32875175	chr9:32875175:C:A	rs74585469	C	A	C	Sox3.mouse_HMG_3	3	1	-	1.8931351829085448	-5.01335930160617	TGTGAAAGATATTTATA
chr9	32894766	32894767	chr9:32894767:G:A	rs7040182	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr9	33080789	33080790	chr9:33080790:A:C	rs78608226	A	C	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr9	33128430	33128431	chr9:33128431:A:G	rs10758191	A	G	G	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr9	33148553	33148554	chr9:33148554:G:A	rs6476402	G	A	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr9	33249249	33249250	chr9:33249250:C:T	rs117006972	C	T	C	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr9	33318389	33318390	chr9:33318390:G:A	rs636759	G	A	A	Sox3.mouse_HMG_3	15	1	+	3.5697436265244433	4.428524973380863	AGTGAATGGTGTTCAGC
chr9	33318537	33318538	chr9:33318538:C:T	rs80316528	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr9	33318589	33318590	chr9:33318590:A:G	rs3849903	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr9	33321012	33321013	chr9:33321013:C:T	rs146828525	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr9	33425386	33425387	chr9:33425387:G:A	rs4878538	G	A	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr9	33619075	33619076	chr9:33619076:G:A	rs34206473	G	A	g	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr9	33795787	33795788	chr9:33795788:T:G	rs855579	T	G	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr9	33795809	33795810	chr9:33795810:A:G	rs2075584	A	G	A	Sox3.mouse_HMG_3	12	1	-	4.225158971065122	-1.9676945963356438	GATGAATGACAGTGGTG
chr9	33795823	33795824	chr9:33795824:A:C	rs899853332	A	C	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr9	33836438	33836439	chr9:33836439:G:T	rs1749270	G	T	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr9	34251944	34251945	chr9:34251945:G:C	rs1049557	G	C	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr9	34251953	34251954	chr9:34251954:G:T	rs3135929	G	T	G	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr9	34271382	34271383	chr9:34271383:T:C	rs7868756	T	C	T	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr9	34525049	34525050	chr9:34525050:T:A	rs10758262	T	A	T	Sox3.mouse_HMG_3	12	1	+	2.3854959254862793	-3.727314934240951	AAAGAATGGTAGTTAAA
chr9	34548139	34548140	chr9:34548140:C:T	rs77364997	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr9	34548149	34548150	chr9:34548150:A:C	rs10758266	A	C	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr9	34548177	34548178	chr9:34548178:G:A	chr9:34548178:G:A	G	A	G	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr9	34572816	34572817	chr9:34572817:C:T	rs1571401	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr9	34960171	34960172	chr9:34960172:C:T	rs145637357	C	T	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr9	35358010	35358011	chr9:35358011:A:C	rs10814230	A	C	C	Sox3.mouse_HMG_3	14	1	+	3.447016412289925	-2.934929754136985	TATGAATTTGATTGATC
chr9	35370485	35370486	chr9:35370486:A:G	chr9:35370486:A:G	A	G	A	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr9	35452838	35452839	chr9:35452839:C:A	rs10972481	C	A	C	Sox3.mouse_HMG_3	8	1	-	3.250705896828576	2.545803483234538	TAGGAATGGCAGTCTTT
chr9	35495457	35495458	chr9:35495458:T:G	rs570009244	T	G	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr9	35526607	35526608	chr9:35526608:G:T	rs2115983	G	T	T	Sox3.mouse_HMG_3	3	1	+	7.83062972002678	0.9241352355120653	AATGTATTGCATTCAGA
chr9	35982800	35982801	chr9:35982801:A:G	rs10972662	A	G	a	Sox3.mouse_HMG_3	6	1	-	1.5614109518572508	-5.046539689683546	CTTGAATGGTATGTATA
chr9	35982823	35982824	chr9:35982824:C:A	rs10972663	C	A	c	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr9	36064309	36064310	chr9:36064310:G:T	rs1258137101	G	T	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr9	36131297	36131298	chr9:36131298:G:A	rs10972751	G	A	G	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr9	36207524	36207525	chr9:36207525:C:G	rs7851157	C	G	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr9	36329302	36329303	chr9:36329303:G:A	rs4300086	G	A	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr9	36359643	36359644	chr9:36359644:C:T	rs16933238	C	T	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr9	36504204	36504205	chr9:36504205:G:A	rs34365936	G	A	G	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr9	36729268	36729269	chr9:36729269:T:C	rs75326993	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr9	36881801	36881802	chr9:36881802:C:A	rs62534680	C	A	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr9	37058137	37058138	chr9:37058138:G:A	rs1999142	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr9	37058146	37058147	chr9:37058147:A:C	rs3013742	A	C	C	Sox3.mouse_HMG_3	11	1	-	0.9868984086530228	-0.44753769164278423	TCTGAATTGCATTTGTG
chr9	37174612	37174613	chr9:37174613:A:G	rs7026004	A	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr9	37732470	37732471	chr9:37732471:A:T	rs41304744	A	T	A	Sox3.mouse_HMG_3	10	1	+	0.8512834643077776	-5.899768020873693	GCTGCATTGCATTTATA
chr9	37876494	37876495	chr9:37876495:T:C	rs73451233	T	C	T	Sox3.mouse_HMG_3	16	1	+	3.591339585873035	2.724412846400756	AGTCAATTTCATTCAAT
chr9	38113230	38113231	chr9:38113231:T:C	rs10738991	T	C	C	Sox3.mouse_HMG_3	14	1	-	-0.32327827412963894	-6.705224440556549	GCTGGAGTGCAGTCATG
chr9	38118015	38118016	chr9:38118016:T:A	rs188939769	T	A	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr9	38135566	38135567	chr9:38135567:G:A	rs885431	G	A	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr9	38179991	38179992	chr9:38179992:A:G	rs7860816	A	G	G	Sox3.mouse_HMG_3	10	1	+	1.6072976505010603	-5.000652991039737	GGGGAATGGCAGGCATG
chr9	38214049	38214050	chr9:38214050:C:T	rs2810726	C	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr9	38290696	38290697	chr9:38290697:C:A	rs4878191	C	A	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr9	38361275	38361276	chr9:38361276:A:T	rs767147940	A	T	A	Sox3.mouse_HMG_3	15	1	-	4.685445867039672	2.4216364028028505	GATAAAAGGCATTCATC
chr9	38371822	38371823	chr9:38371823:T:A	rs10758493	T	A	T	Sox3.mouse_HMG_3	1	1	-	1.2901958109810139	-1.6798809972080813	CATGCTTTATAGTCATG
chr9	38371822	38371823	chr9:38371823:T:C	chr9:38371823:T:C	T	C	T	Sox3.mouse_HMG_3	1	1	-	1.2901958109810139	-1.8099341254562775	CATGCTTTATAGTCATG
chr9	38599299	38599300	chr9:38599300:G:T	rs10511949	G	T	G	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr9	38652917	38652918	chr9:38652918:C:T	rs10758513	C	T	c	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr9	38998342	38998343	chr9:38998343:A:G	rs868197614	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr9	39828849	39828850	chr9:39828850:G:A	rs28374567	G	A	G	Sox3.mouse_HMG_3	8	1	+	2.308516274577981	1.6853996274001675	AATGAATTGCATGGAAA
chr9	39828858	39828859	chr9:39828859:A:C	rs182750603	A	C	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr9	40926286	40926287	chr9:40926287:A:G	rs78287725	A	G	.	Sox3.mouse_HMG_3	14	1	+	11.661840807032306	5.279894640605394	TATGAATGTTGTTCATA
chr9	40926712	40926713	chr9:40926713:C:T	rs80269136	C	T	.	Sox3.mouse_HMG_3	8	1	+	4.313133694671011	4.051013949754905	CATGTATGCCAGTCACA
chr9	40926734	40926735	chr9:40926735:C:A	rs56022200	C	A	.	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr9	40928958	40928959	chr9:40928959:T:C	rs2374889	T	C	.	Sox3.mouse_HMG_3	5	1	+	0.6490540100419568	0.6490540100419568	AATGATTGTCTGTCAAA
chr9	41798880	41798881	chr9:41798881:T:G	rs28588888	T	G	.	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr9	41798915	41798916	chr9:41798916:A:G	rs10119728	A	G	.	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr9	42365893	42365894	chr9:42365894:G:A	rs878902980	G	A	g	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr9	68537107	68537108	chr9:68537108:T:C	rs41312182	T	C	T	Sox3.mouse_HMG_3	14	1	-	4.495264455051595	-1.8866817113753163	CCTGAATTCCAGACATA
chr9	68689329	68689330	chr9:68689330:A:T	rs12552784	A	T	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr9	68777959	68777960	chr9:68777960:G:A	rs4623507	G	A	G	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr9	68841656	68841657	chr9:68841657:A:G	rs6560392	A	G	A	Sox3.mouse_HMG_3	15	1	-	3.548303469484667	-1.1660899422304012	GATGACTTTTATTCCTT
chr9	68897910	68897911	chr9:68897911:T:C	rs7043242	T	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr9	69016816	69016817	chr9:69016817:A:C	rs4745520	A	C	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr9	69099646	69099647	chr9:69099647:G:A	rs34965002	G	A	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr9	69099653	69099654	chr9:69099654:A:G	rs116401773	A	G	A	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr9	69176126	69176127	chr9:69176127:A:G	rs17061953	A	G	A	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr9	69279236	69279237	chr9:69279237:G:A	rs115642877	G	A	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr9	69279310	69279311	chr9:69279311:A:C	rs2309417	A	C	C	Sox3.mouse_HMG_3	5	1	+	2.6594361360948806	-3.9480045283838283	CATGAAACTTATTCATT
chr9	69324282	69324283	chr9:69324283:G:C	rs72713166	G	C	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr9	69327175	69327176	chr9:69327176:G:A	rs3793660	G	A	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr9	69347839	69347840	chr9:69347840:G:A	rs7044720	G	A	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr9	69474828	69474829	chr9:69474829:C:T	rs11138843	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr9	69622916	69622917	chr9:69622917:T:C	rs7856629	T	C	T	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr9	69898323	69898324	chr9:69898324:A:G	rs1907965	A	G	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr9	70128249	70128250	chr9:70128250:C:A	rs2209779	C	A	C	Sox3.mouse_HMG_3	16	1	-	5.90221372182861	4.715284205623588	AAAGAATGCTATTCCTG
chr9	70150047	70150048	chr9:70150048:T:C	rs12686850	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr9	70406578	70406579	chr9:70406579:A:G	rs3780603	A	G	G	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr9	70484286	70484287	chr9:70484287:A:G	rs7875663	A	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr9	70566716	70566717	chr9:70566717:T:G	rs62545464	T	G	G	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr9	70577654	70577655	chr9:70577655:C:T	rs12686512	C	T	C	Sox3.mouse_HMG_3	14	1	-	3.9868712066273746	10.368817373054288	AATGTATGGCAGTCGTA
chr9	70979347	70979348	chr9:70979348:G:A	rs2909296	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr9	71232771	71232772	chr9:71232772:A:G	rs12350547	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr9	71315316	71315317	chr9:71315317:C:G	rs11142798	C	G	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr9	71492181	71492182	chr9:71492182:T:C	rs10123278	T	C	T	Sox3.mouse_HMG_3	10	1	-	4.993356931037264	-1.6145937105035344	AATGAATGTTATAGATA
chr9	72024475	72024476	chr9:72024476:C:A	rs11143072	C	A	c	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr9	72486032	72486033	chr9:72486033:C:T	rs376717928	C	T	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr9	72603018	72603019	chr9:72603019:T:C	rs149185781	T	C	T	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr9	72680978	72680979	chr9:72680979:G:A	rs1444834	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr9	72680983	72680984	chr9:72680984:A:G	rs1796980	A	G	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr9	72827190	72827191	chr9:72827191:A:G	rs12005837	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr9	72987986	72987987	chr9:72987987:A:G	rs7856728	A	G	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr9	73023059	73023060	chr9:73023060:T:C	rs546190473	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr9	73023060	73023061	chr9:73023061:G:T	rs548142608	G	T	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr9	73090110	73090111	chr9:73090111:C:T	rs72737016	C	T	C	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr9	73114316	73114317	chr9:73114317:T:C	rs10869222	T	C	C	Sox3.mouse_HMG_3	6	1	+	11.04189234599567	4.433941704454871	GATGAATGCTGTTCATT
chr9	73157018	73157019	chr9:73157019:C:T	rs4745218	C	T	C	Sox3.mouse_HMG_3	8	1	-	0.8923549345884738	0.2692382874106598	CTTGAATTGCTATCATG
chr9	73522047	73522048	chr9:73522048:A:G	rs74877177	A	G	A	Sox3.mouse_HMG_3	10	1	+	1.5451833761258291	-5.062767265414968	GCTTATTGGCATTCATA
chr9	73649306	73649307	chr9:73649307:G:A	rs17059214	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr9	74041779	74041780	chr9:74041780:T:C	rs17059833	T	C	T	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr9	74333205	74333206	chr9:74333206:T:C	rs11143925	T	C	T	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr9	74782602	74782603	chr9:74782603:T:C	rs12339024	T	C	T	Sox3.mouse_HMG_3	5	1	+	2.0576293416194336	2.0576293416194336	GATGATTGTTTTTCAGA
chr9	74924408	74924409	chr9:74924409:A:T	rs60334778	A	T	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr9	74924416	74924417	chr9:74924417:T:C	rs7047248	T	C	C	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr9	75067893	75067894	chr9:75067894:G:C	rs3758186	G	C	G	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr9	75134652	75134653	chr9:75134653:C:T	rs10869509	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr9	75370319	75370320	chr9:75370320:G:A	rs943508	G	A	A	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr9	75397062	75397063	chr9:75397063:C:G	rs77400024	C	G	C	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr9	75457844	75457845	chr9:75457845:T:C	rs4745404	T	C	C	Sox3.mouse_HMG_3	14	1	-	2.0758732237242365	-4.3060729427026745	GGTGAATGGAAGTGATG
chr9	75488998	75488999	chr9:75488999:C:A	rs1854131	C	A	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr9	75615356	75615357	chr9:75615357:G:T	rs149906743	G	T	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr9	75641858	75641859	chr9:75641859:G:A	rs8181223	G	A	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr9	75641884	75641885	chr9:75641885:A:T	rs1328568	A	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr9	75904269	75904270	chr9:75904270:C:A	rs940791353	C	A	C	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr9	75904288	75904289	chr9:75904289:A:C	rs139523119	A	C	A	Sox3.mouse_HMG_3	5	1	+	9.893315560791681	3.2858748963129694	GATTAATTCTATTCATT
chr9	76024633	76024634	chr9:76024634:A:G	rs12344217	A	G	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr9	76027650	76027651	chr9:76027651:A:G	rs12554374	A	G	A	Sox3.mouse_HMG_3	1	1	-	2.9430451526097063	1.736262446942907	GTTGATTTGCATTCACT
chr9	76108019	76108020	chr9:76108020:G:A	rs914367	G	A	G	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr9	76155601	76155602	chr9:76155602:G:A	rs7047773	G	A	A	Sox3.mouse_HMG_3	15	1	+	0.9249939643112934	1.783775311167714	CATCAAAGGCATTCAGG
chr9	76502834	76502835	chr9:76502835:A:G	rs2282683	A	G	A	Sox3.mouse_HMG_3	10	1	+	1.8259564910249921	-4.781994150515804	TTTCTATTGCATTCATG
chr9	76545076	76545077	chr9:76545077:G:T	rs927632	G	T	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr9	76610318	76610319	chr9:76610319:C:A	rs10869787	C	A	C	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr9	77252593	77252594	chr9:77252594:T:C	rs72744208	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr9	77454911	77454912	chr9:77454912:C:G	rs1982295	C	G	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr9	77507528	77507529	chr9:77507529:A:G	chr9:77507529:A:G	A	G	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr9	77765255	77765256	chr9:77765256:A:G	rs10869967	A	G	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr9	77928290	77928291	chr9:77928291:A:T	rs17786974	A	T	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr9	77936085	77936086	chr9:77936086:C:T	rs11145619	C	T	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr9	78289344	78289345	chr9:78289345:A:G	rs10867173	A	G	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr9	78289388	78289389	chr9:78289389:A:G	rs10867174	A	G	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	78463988	78463989	chr9:78463989:G:C	rs2998733	G	C	G	Sox3.mouse_HMG_3	9	1	-	-0.39636677393502073	-5.736295781309584	GGTGAGTGGCAGGCAAG
chr9	78571465	78571466	chr9:78571466:C:A	rs2938883	C	A	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr9	78685651	78685652	chr9:78685652:T:C	rs75527234	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr9	78972990	78972991	chr9:78972991:C:T	rs4878034	C	T	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr9	79060776	79060777	chr9:79060777:A:T	rs7021873	A	T	A	Sox3.mouse_HMG_3	1	1	+	3.021101766109422	0.051024957920325686	AACTAATGCCAGTCATA
chr9	79155107	79155108	chr9:79155108:G:C	rs77594914	G	C	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr9	79255970	79255971	chr9:79255971:T:C	rs111618609	T	C	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr9	79287066	79287067	chr9:79287067:A:G	rs980164	A	G	A	Sox3.mouse_HMG_3	2	1	-	9.73528828643887	3.1294091682079377	TTTGAATTTTATTCACA
chr9	79350572	79350573	chr9:79350573:G:A	rs995573	G	A	a	Sox3.mouse_HMG_3	10	1	+	2.0213297964775894	8.629280438018387	TTTAAATGCTGTTCATT
chr9	79384158	79384159	chr9:79384159:C:A	rs12345707	C	A	A	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr9	79610132	79610133	chr9:79610133:A:G	rs114925854	A	G	A	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr9	79610137	79610138	chr9:79610138:G:A	rs2807310	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr9	79671847	79671848	chr9:79671848:C:T	rs7037512	C	T	T	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr9	79952896	79952897	chr9:79952897:T:C	rs17729057	T	C	T	Sox3.mouse_HMG_3	12	1	+	0.5630196811908663	-5.629833886209901	GAAGAATGGTATTGGTG
chr9	80116410	80116411	chr9:80116411:C:A	rs1576198	C	A	A	Sox3.mouse_HMG_3	16	1	+	2.074896882710561	4.092812681935336	CTTGAAAGGCAGTCAAC
chr9	80197933	80197934	chr9:80197934:A:G	rs10746620	A	G	A	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr9	80402833	80402834	chr9:80402834:A:G	rs73654175	A	G	A	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr9	80500579	80500580	chr9:80500580:C:T	rs11138701	C	T	T	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr9	80519626	80519627	chr9:80519627:C:A	rs1330662619	C	A	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr9	80856938	80856939	chr9:80856939:C:T	rs17242158	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr9	80856947	80856948	chr9:80856948:A:T	rs1324163	A	T	T	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr9	80976857	80976858	chr9:80976858:T:C	rs117009555	T	C	T	Sox3.mouse_HMG_3	10	1	-	4.619405194108046	-1.9885454474327517	GATAAATGCTATTCCTC
chr9	81035303	81035304	chr9:81035304:A:G	rs72738064	A	G	A	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr9	81140589	81140590	chr9:81140590:T:C	rs56027778	T	C	C	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr9	81182469	81182470	chr9:81182470:G:A	rs1288791658	G	A	G	Sox3.mouse_HMG_3	9	1	-	11.67083406801613	11.678470745007878	GATGAATTGCCTTCATG
chr9	81465612	81465613	chr9:81465613:A:C	chr9:81465613:A:C	A	C	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	81535768	81535769	chr9:81535769:G:A	rs773946981	G	A	G	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr9	81597740	81597741	chr9:81597741:T:A	rs76512220	T	A	T	Sox3.mouse_HMG_3	2	1	+	2.137449571711037	-3.589879142628588	CATGAATGATATAAAAA
chr9	81597747	81597748	chr9:81597748:T:A	rs1573077	T	A	A	Sox3.mouse_HMG_3	9	1	+	2.137449571711037	-3.9244057297890294	CATGAATGATATAAAAA
chr9	81733279	81733280	chr9:81733280:G:C	rs922982	G	C	g	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr9	81787835	81787836	chr9:81787836:C:T	rs10867814	C	T	C	Sox3.mouse_HMG_3	16	1	-	5.734358362519121	5.698417906066595	AATGAACTTTAGTCAGG
chr9	81789325	81789326	chr9:81789326:G:C	rs11790239	G	C	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr9	82271468	82271469	chr9:82271469:A:G	rs117156887	A	G	A	Sox3.mouse_HMG_3	0	1	-	0.15119776913873517	-1.3036728761981304	TAAGAGTGCCATCCATG
chr9	82560272	82560273	chr9:82560273:C:T	rs138109361	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr9	82862682	82862683	chr9:82862683:A:G	rs927354	A	G	A	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr9	83166793	83166794	chr9:83166794:G:T	rs11139936	G	T	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr9	83182458	83182459	chr9:83182459:C:G	rs1408098	C	G	G	Sox3.mouse_HMG_3	14	1	-	1.2550821628760291	1.2550821628760291	GTTGAATGACAGTGGTG
chr9	83209655	83209656	chr9:83209656:C:A	rs11139965	C	A	C	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr9	83424202	83424203	chr9:83424203:G:A	rs11140077	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr9	83449103	83449104	chr9:83449104:C:A	rs76455438	C	A	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr9	83454321	83454322	chr9:83454322:C:T	rs4877767	C	T	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr9	83494208	83494209	chr9:83494209:C:A	rs11140121	C	A	C	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr9	83505672	83505673	chr9:83505673:G:A	rs78683018	G	A	A	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr9	83583258	83583259	chr9:83583259:T:C	rs79423577	T	C	t	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr9	83639445	83639446	chr9:83639446:G:A	rs7866066	G	A	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr9	84100650	84100651	chr9:84100651:T:C	rs7853970	T	C	C	Sox3.mouse_HMG_3	5	1	-	7.482641866110825	0.9938069440399611	TTTGAATGTTAGTAATA
chr9	84159097	84159098	chr9:84159098:C:T	rs1246269	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr9	84230118	84230119	chr9:84230119:G:C	rs2184742	G	C	C	Sox3.mouse_HMG_3	13	1	-	1.4954738170523227	-5.111786793409697	GATGAATGACTCTCAAC
chr9	84285031	84285032	chr9:84285032:A:C	rs4877832	A	C	C	Sox3.mouse_HMG_3	16	1	+	2.715760702891007	0.697844903666232	CATAAAAGGCATTCAAA
chr9	84449190	84449191	chr9:84449191:C:T	rs3895470	C	T	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr9	85090213	85090214	chr9:85090214:C:T	rs631648	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr9	85163638	85163639	chr9:85163639:G:T	rs760606113	G	T	g	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr9	85274269	85274270	chr9:85274270:G:A	rs73649528	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr9	85377873	85377874	chr9:85377874:A:C	rs2814734	A	C	C	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr9	85390806	85390807	chr9:85390807:C:T	rs11789279	C	T	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr9	85571878	85571879	chr9:85571879:G:C	rs73475734	G	C	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr9	85742744	85742745	chr9:85742745:T:G	rs78036978	T	G	.	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr9	85742773	85742774	chr9:85742774:C:T	rs62570657	C	T	.	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr9	85742924	85742925	chr9:85742925:T:C	rs185574272	T	C	.	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr9	85792193	85792194	chr9:85792194:C:G	chr9:85792194:C:G	C	G	.	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr9	86560103	86560104	chr9:86560104:A:C	rs55905974	A	C	A	Sox3.mouse_HMG_3	2	1	-	2.1327721302360296	-4.616207831635573	CATGCATGACAGTGATG
chr9	86633884	86633885	chr9:86633885:A:G	chr9:86633885:A:G	A	G	A	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr9	86667510	86667511	chr9:86667511:T:A	rs188804512	T	A	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr9	86722428	86722429	chr9:86722429:A:C	rs79547027	A	C	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr9	86829809	86829810	chr9:86829810:G:A	rs1028880	G	A	G	Sox3.mouse_HMG_3	3	1	+	3.0742695270322615	-2.707295360496971	CCTGGATTCCAGTCATT
chr9	86860039	86860040	chr9:86860040:G:A	rs60444631	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr9	86894528	86894529	chr9:86894529:T:G	rs10780800	T	G	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr9	86921656	86921657	chr9:86921657:C:G	rs58306968	C	G	C	Sox3.mouse_HMG_3	0	1	-	2.285616583065237	0.5618250839286185	GAGGAATTTCATTAAAA
chr9	86990237	86990238	chr9:86990238:C:T	rs6559958	C	T	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr9	87138555	87138556	chr9:87138556:A:C	rs277736	A	C	A	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr9	87187985	87187986	chr9:87187986:C:T	rs277716	C	T	T	Sox3.mouse_HMG_3	1	1	-	4.892459116601944	7.992589053039233	TGTGAATGTCAGTTAAG
chr9	87376784	87376785	chr9:87376785:G:C	rs17052797	G	C	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr9	87396607	87396608	chr9:87396608:T:G	rs11141779	T	G	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr9	87524322	87524323	chr9:87524323:T:C	rs62562071	T	C	C	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr9	87875514	87875515	chr9:87875515:C:T	rs59799274	C	T	-	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr9	87886364	87886365	chr9:87886365:G:A	rs61580688	G	A	-	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr9	88211849	88211850	chr9:88211850:A:G	rs2578240	A	G	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr9	88433852	88433853	chr9:88433853:A:G	rs3793635	A	G	A	Sox3.mouse_HMG_3	2	1	-	1.3049072651803995	-5.300971853050531	TATGGATGACATTAAGT
chr9	88579721	88579722	chr9:88579722:C:T	rs77631716	C	T	C	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr9	88819008	88819009	chr9:88819009:C:A	rs9410363	C	A	C	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr9	88819009	88819010	chr9:88819010:G:A	rs185021978	G	A	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr9	88835440	88835441	chr9:88835441:A:G	rs2818246	A	G	A	Sox3.mouse_HMG_3	7	1	-	4.891109233756019	-0.5123019462213001	CTTGAAGTATAGTCATA
chr9	88835452	88835453	chr9:88835453:A:G	rs114144170	A	G	A	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr9	88890413	88890414	chr9:88890414:A:G	rs10867129	A	G	G	Sox3.mouse_HMG_3	10	1	+	3.095677092636261	-3.5122735489045374	AGTAAATTCCATTCAGC
chr9	88935632	88935633	chr9:88935633:A:C	chr9:88935633:A:C	A	C	A	Sox3.mouse_HMG_3	10	1	+	2.2333802286667073	-4.517671256514763	GATGAATCTCAGTCTAG
chr9	89137699	89137700	chr9:89137700:T:C	rs112269322	T	C	T	Sox3.mouse_HMG_3	6	1	+	1.392999410046615	-5.214951231494182	TGAGAATGTCAGTGATA
chr9	89319209	89319210	chr9:89319210:T:C	rs541976907	T	C	T	Sox3.mouse_HMG_3	5	1	-	4.6205466285742265	-1.8682882934966374	TATGCATTTTACTCATG
chr9	89490504	89490505	chr9:89490505:T:C	rs9695896	T	C	C	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr9	89515169	89515170	chr9:89515170:G:C	rs2031972	G	C	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr9	89525247	89525248	chr9:89525248:G:T	rs868978	G	T	G	Sox3.mouse_HMG_3	-14	0	+	0	0	.
chr9	89534350	89534351	chr9:89534351:T:C	rs371282453	T	C	T	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr9	89714328	89714329	chr9:89714329:C:A	rs10797123	C	A	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	89731903	89731904	chr9:89731904:T:C	rs907935108	T	C	C	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr9	89742905	89742906	chr9:89742906:C:T	rs77632117	C	T	C	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr9	89765299	89765300	chr9:89765300:A:C	rs11265928	A	C	A	Sox3.mouse_HMG_3	12	1	-	1.9610708210642815	-4.4200040252576285	AATAAATGACAGTAAAG
chr9	89766952	89766953	chr9:89766953:C:T	rs9330441	C	T	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr9	89767813	89767814	chr9:89767814:T:G	rs10481809	T	G	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr9	89792868	89792869	chr9:89792869:C:T	rs9330447	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr9	89795790	89795791	chr9:89795791:A:G	rs9775307	A	G	A	Sox3.mouse_HMG_3	15	1	-	3.760082884015926	-0.9543105276991426	AATGCATTTCATGCATG
chr9	89892215	89892216	chr9:89892216:A:G	rs993193017	A	G	A	Sox3.mouse_HMG_3	0	1	+	5.699138468227406	6.52442236937375	AGTGAGTGGCATTCAGA
chr9	90037794	90037795	chr9:90037795:G:A	rs78556729	G	A	G	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr9	90095492	90095493	chr9:90095493:C:T	rs149369434	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr9	90167828	90167829	chr9:90167829:A:C	rs10820972	A	C	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr9	90422001	90422002	chr9:90422002:G:T	rs10821420	G	T	G	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr9	90422033	90422034	chr9:90422034:G:A	rs10125394	G	A	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr9	90422033	90422034	chr9:90422034:G:C	chr9:90422034:G:C	G	C	G	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr9	90428634	90428635	chr9:90428635:A:G	rs12377383	A	G	G	Sox3.mouse_HMG_3	-15	0	+	0	0	.
chr9	90428643	90428644	chr9:90428644:T:G	rs10993461	T	G	G	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr9	90577822	90577823	chr9:90577823:G:A	rs492334	G	A	G	Sox3.mouse_HMG_3	14	1	-	2.7477241123680383	2.7477241123680383	AATGAATTATAGGCCTA
chr9	90677476	90677477	chr9:90677477:C:A	rs7033851	C	A	.	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr9	90802624	90802625	chr9:90802625:C:T	rs74755060	C	T	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr9	90915448	90915449	chr9:90915449:C:T	rs7035017	C	T	C	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr9	91045213	91045214	chr9:91045214:A:G	rs10115589	A	G	A	Sox3.mouse_HMG_3	4	1	+	2.4172350096806072	-3.9655817183134605	GGTCAATGACATTCCTG
chr9	91045225	91045226	chr9:91045226:G:A	rs117094759	G	A	G	Sox3.mouse_HMG_3	16	1	+	2.4172350096806072	2.3812945532280816	GGTCAATGACATTCCTG
chr9	91192637	91192638	chr9:91192638:C:T	rs10991821	C	T	C	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr9	91500896	91500897	chr9:91500897:A:G	rs115635762	A	G	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr9	91578187	91578188	chr9:91578188:C:T	rs16907611	C	T	C	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr9	91665825	91665826	chr9:91665826:C:T	rs9409451	C	T	c	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr9	91802832	91802833	chr9:91802833:G:C	rs77075046	G	C	G	Sox3.mouse_HMG_3	7	1	+	-0.3077328555152612	-6.561176977722652	GGCGAAAGGCATTCAGG
chr9	91845011	91845012	chr9:91845012:G:A	rs16907887	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr9	91845050	91845051	chr9:91845051:G:A	rs7029950	G	A	G	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr9	92035219	92035220	chr9:92035220:T:C	rs77528906	T	C	t	Sox3.mouse_HMG_3	14	1	-	1.7164508890186432	-4.665495277408267	TCTAAATGGTAGTCACT
chr9	92049080	92049081	chr9:92049081:G:C	rs34332001	G	C	G	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr9	92180866	92180867	chr9:92180867:G:C	rs74843892	G	C	-	Sox3.mouse_HMG_3	0	1	+	1.0552004787468996	-0.6685910203897192	GCTAAATGCCAGGCATG
chr9	92180897	92180898	chr9:92180898:C:T	rs140768655	C	T	-	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr9	92333079	92333080	chr9:92333080:A:G	rs113076958	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr9	92350277	92350278	chr9:92350278:G:A	rs7020874	G	A	A	Sox3.mouse_HMG_3	-14	0	-	0	0	.
chr9	92350333	92350334	chr9:92350334:C:T	rs537413166	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr9	92534822	92534823	chr9:92534823:C:T	rs73522343	C	T	C	Sox3.mouse_HMG_3	0	1	+	2.6549388699390075	4.109809515275871	CATGAAATGTATACATT
chr9	92563321	92563322	chr9:92563322:T:C	rs111793708	T	C	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr9	92563348	92563349	chr9:92563349:A:G	rs7865019	A	G	A	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr9	92618443	92618444	chr9:92618444:G:A	rs2148537	G	A	G	Sox3.mouse_HMG_3	13	1	-	0.17364388918945872	-6.433616721272561	GCTGAAGGACAGACATG
chr9	92618456	92618457	chr9:92618457:C:T	rs147005093	C	T	C	Sox3.mouse_HMG_3	0	1	-	0.17364388918945872	-0.6516400119568855	GCTGAAGGACAGACATG
chr9	92761991	92761992	chr9:92761992:G:C	rs72758525	G	C	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr9	92765685	92765686	chr9:92765686:G:A	rs1315062616	G	A	G	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr9	92875645	92875646	chr9:92875646:G:C	rs5003738	G	C	C	Sox3.mouse_HMG_3	6	1	-	2.869995810514961	2.726894966874288	CATGATCGGTAGTCATA
chr9	92978613	92978614	chr9:92978614:G:A	rs10992562	G	A	g	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr9	93037163	93037164	chr9:93037164:T:C	rs6479447	T	C	C	Sox3.mouse_HMG_3	10	1	-	8.634119706617497	2.026169065076701	GATGAATGTGAGTCAGA
chr9	93523080	93523081	chr9:93523081:T:C	rs4744254	T	C	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr9	93797348	93797349	chr9:93797349:G:T	rs144490091	G	T	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr9	93803005	93803006	chr9:93803006:C:T	rs10821226	C	T	C	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr9	93849831	93849832	chr9:93849832:C:G	rs4744294	C	G	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr9	93980378	93980379	chr9:93980379:C:T	rs11792744	C	T	C	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr9	94168820	94168821	chr9:94168821:C:A	rs534566061	C	A	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr9	94645714	94645715	chr9:94645715:A:G	rs10821376	A	G	A	Sox3.mouse_HMG_3	10	1	+	2.7632739132302113	-3.8446767283105867	CTTGATTTACAGTCAAA
chr9	94653626	94653627	chr9:94653627:T:C	rs10993286	T	C	T	Sox3.mouse_HMG_3	15	1	+	1.8242506786021784	-2.89014273311289	GCTGAATGCTTCTCATG
chr9	94706136	94706137	chr9:94706137:A:G	rs116890132	A	G	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr9	94908559	94908560	chr9:94908560:T:G	rs72748591	T	G	T	Sox3.mouse_HMG_3	4	1	-	2.343725043722947	-4.406816464396439	AAAGAATGAAAGTCAAG
chr9	94948764	94948765	chr9:94948765:T:C	rs57094217	T	C	T	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr9	95138688	95138689	chr9:95138689:G:A	rs1241562144	G	A	G	Sox3.mouse_HMG_3	0	1	+	0.19814856076162068	-0.6271353403847233	GGTGTTTGTCATTCATC
chr9	95138706	95138707	chr9:95138707:T:C	rs634726	T	C	C	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr9	95341293	95341294	chr9:95341294:G:T	rs1125753	G	T	T	Sox3.mouse_HMG_3	-3	0	+	0	0	.
chr9	95640718	95640719	chr9:95640719:A:G	rs12238893	A	G	A	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr9	96193660	96193661	chr9:96193661:C:T	rs4742877	C	T	T	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr9	96576945	96576946	chr9:96576946:T:C	rs147260077	T	C	T	Sox3.mouse_HMG_3	10	1	-	5.405355239874368	-1.20259540166643	ATTGTATTGTAGTCATT
chr9	96672810	96672811	chr9:96672811:G:T	rs7045407	G	T	T	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr9	96672847	96672848	chr9:96672848:G:A	rs78463861	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr9	97179703	97179704	chr9:97179704:T:C	rs4263876	T	C	T	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr9	97321589	97321590	chr9:97321590:G:A	rs4345679	G	A	G	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr9	97382144	97382145	chr9:97382145:A:G	rs17331748	A	G	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr9	97621689	97621690	chr9:97621690:T:C	rs140546924	T	C	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr9	97710888	97710889	chr9:97710889:G:A	rs188204262	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr9	97710920	97710921	chr9:97710921:C:T	rs80296531	C	T	C	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr9	97714843	97714844	chr9:97714844:A:G	rs73484403	A	G	A	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr9	97887813	97887814	chr9:97887814:G:A	rs7866436	G	A	A	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr9	97928856	97928857	chr9:97928857:T:C	rs143351145	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr9	98206315	98206316	chr9:98206316:T:C	rs7029585	T	C	c	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr9	98206320	98206321	chr9:98206321:A:G	rs151201302	A	G	A	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr9	98228570	98228571	chr9:98228571:G:A	rs10818627	G	A	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	98351620	98351621	chr9:98351621:A:T	rs575941	A	T	T	Sox3.mouse_HMG_3	3	1	+	7.509491073880463	6.384561476894979	TTTAAATTTCATTCATT
chr9	98533637	98533638	chr9:98533638:T:C	rs10986584	T	C	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	98552108	98552109	chr9:98552109:T:C	rs74822886	T	C	T	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr9	98568138	98568139	chr9:98568139:G:C	rs13288889	G	C	G	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr9	98600665	98600666	chr9:98600666:G:A	rs914665	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr9	98687694	98687695	chr9:98687695:T:C	rs337531	T	C	C	Sox3.mouse_HMG_3	1	1	-	1.5887849671660144	-1.5113449692712808	TAGGAAATCCAGTCATT
chr9	98697984	98697985	chr9:98697985:G:A	rs337547	G	A	G	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr9	98793053	98793054	chr9:98793054:T:C	rs34785870	T	C	T	Sox3.mouse_HMG_3	6	1	+	2.520127281724592	-4.0878233598162055	GATGAATTTCAGCAATT
chr9	98805975	98805976	chr9:98805976:G:C	rs11795201	G	C	G	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr9	98866484	98866485	chr9:98866485:T:C	rs551212291	T	C	T	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr9	98874014	98874015	chr9:98874015:A:C	rs34391009	A	C	A	Sox3.mouse_HMG_3	5	1	+	2.8713926814351707	-3.73604798304354	GATGCATGCCAATCAGG
chr9	98883307	98883308	chr9:98883308:A:T	rs7851057	A	T	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr9	98886755	98886756	chr9:98886756:C:T	rs117757615	C	T	C	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr9	98886792	98886793	chr9:98886793:G:A	rs145762742	G	A	G	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr9	98901290	98901291	chr9:98901291:G:A	rs117968037	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr9	98966891	98966892	chr9:98966892:A:T	rs4743299	A	T	A	Sox3.mouse_HMG_3	6	1	-	2.617903468698281	-4.133148016483188	AATGAATGCCAGTAGTT
chr9	99269273	99269274	chr9:99269274:T:C	rs328958	T	C	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr9	99269276	99269277	chr9:99269277:G:A	rs2900576	G	A	G	Sox3.mouse_HMG_3	15	1	-	1.6858058679013603	6.400199279616428	CTTGAATGGTTGTCACG
chr9	99358864	99358865	chr9:99358865:A:C	rs701342	A	C	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr9	99421914	99421915	chr9:99421915:G:A	rs10988820	G	A	G	Sox3.mouse_HMG_3	15	1	-	5.908960155990253	10.623353567705323	TATTAATTACATTCACG
chr9	99510155	99510156	chr9:99510156:G:A	rs16918616	G	A	G	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr9	99588537	99588538	chr9:99588538:T:A	rs4743360	T	A	A	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr9	99922760	99922761	chr9:99922761:G:A	rs10121880	G	A	A	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr9	100013808	100013809	chr9:100013809:A:T	rs10988945	A	T	A	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr9	100411746	100411747	chr9:100411747:A:C	rs7031884	A	C	C	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr9	100411747	100411748	chr9:100411748:G:T	rs145955150	G	T	G	Sox3.mouse_HMG_3	-17	0	+	0	0	.
chr9	100411771	100411772	chr9:100411772:G:A	rs115843335	G	A	G	Sox3.mouse_HMG_3	7	1	+	4.7964994524901	-1.7570492621676284	GCTGAACGGTAGTCAAG
chr9	100468673	100468674	chr9:100468674:C:G	rs12684454	C	G	C	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr9	100940112	100940113	chr9:100940113:T:G	rs1330185	T	G	G	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr9	101440254	101440255	chr9:101440255:A:T	rs477578	A	T	T	Sox3.mouse_HMG_3	11	1	-	2.5292781158892716	-3.5553327102126744	GGTGAATTGTATCTATG
chr9	101456017	101456018	chr9:101456018:G:A	rs762779093	G	A	G	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr9	101924253	101924254	chr9:101924254:A:G	rs823912	A	G	A	Sox3.mouse_HMG_3	8	1	+	4.56266324978007	5.185779896957883	CCTGAAGGACAGTCATG
chr9	102232270	102232271	chr9:102232271:A:G	rs10435907	A	G	A	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr9	102798025	102798026	chr9:102798026:T:C	rs9695601	T	C	T	Sox3.mouse_HMG_3	2	1	+	4.9407664820410435	-1.6651126361898871	CATGCATTTTATTCAGT
chr9	102981792	102981793	chr9:102981793:A:G	rs6479146	A	G	G	Sox3.mouse_HMG_3	5	1	+	6.436288766856888	-0.05254615521397499	TTTGAATTTCAGTGATG
chr9	103010525	103010526	chr9:103010526:T:C	rs2185583	T	C	C	Sox3.mouse_HMG_3	10	1	-	1.0496446110057087	-5.558306030535088	TATGAGATTCATTCAGA
chr9	103580941	103580942	chr9:103580942:A:T	rs10820464	A	T	T	Sox3.mouse_HMG_3	12	1	-	0.7159659388434831	-5.396844920883749	CTTGGATGTGAGTCATG
chr9	104088723	104088724	chr9:104088724:A:G	rs75628585	A	G	a	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr9	104841760	104841761	chr9:104841761:T:C	rs2482419	T	C	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr9	104920840	104920841	chr9:104920841:T:G	rs2472510	T	G	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr9	104925614	104925615	chr9:104925615:C:G	rs115919518	C	G	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr9	105103950	105103951	chr9:105103951:T:C	rs112773003	T	C	T	Sox3.mouse_HMG_3	2	1	+	12.380428334146863	5.774549215915933	CATGAATTGCATTCAAC
chr9	105275435	105275436	chr9:105275436:A:C	rs328012	A	C	C	Sox3.mouse_HMG_3	4	1	+	6.4228008677287995	-0.32774064039058604	CTTGAATTTTGTTCATG
chr9	105291778	105291779	chr9:105291779:G:A	rs327983	G	A	G	Sox3.mouse_HMG_3	-11	0	-	0	0	.
chr9	105694294	105694295	chr9:105694295:A:G	rs79483632	A	G	A	Sox3.mouse_HMG_3	14	1	+	1.786252154229405	-4.595694012197506	GGTGAATGACATCAATT
chr9	105694304	105694305	chr9:105694305:A:G	rs79547656	A	G	A	Sox3.mouse_HMG_3	24	0	+	0	0	.
chr9	105969481	105969482	chr9:105969482:T:A	rs188133740	T	A	T	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr9	105978620	105978621	chr9:105978621:T:C	rs28435979	T	C	C	Sox3.mouse_HMG_3	9	1	+	2.5537841893149436	2.5461475123231976	AATAAATACTATTCAGG
chr9	106247727	106247728	chr9:106247728:G:A	rs75120827	G	A	A	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr9	106601288	106601289	chr9:106601289:C:T	rs10978554	C	T	C	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr9	106602784	106602785	chr9:106602785:G:A	rs6477534	G	A	A	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr9	106667097	106667098	chr9:106667098:C:G	rs143148848	C	G	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr9	106794198	106794199	chr9:106794199:G:A	rs146303207	G	A	G	Sox3.mouse_HMG_3	7	1	-	0.622264564552768	6.025675744530085	CAGGAATCCTAGTCATC
chr9	106920761	106920762	chr9:106920762:T:C	rs10978674	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr9	107147311	107147312	chr9:107147312:T:A	rs778042544	T	A	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr9	107154518	107154519	chr9:107154519:G:A	rs74649165	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr9	107223508	107223509	chr9:107223509:C:T	rs34195072	C	T	T	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr9	107242653	107242654	chr9:107242654:T:C	rs7867706	T	C	T	Sox3.mouse_HMG_3	8	1	-	5.840387872814407	6.46350451999222	AATGAATGAGATTTATA
chr9	107410030	107410031	chr9:107410031:C:T	rs10978840	C	T	c	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr9	107645019	107645020	chr9:107645020:T:A	rs115594626	T	A	T	Sox3.mouse_HMG_3	13	1	-	2.2911817367471174	2.0665578002624736	GATGAATTTTTTTAAAA
chr9	107657344	107657345	chr9:107657345:A:T	rs10978974	A	T	A	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr9	107739412	107739413	chr9:107739413:C:T	rs77692542	C	T	C	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr9	107866927	107866928	chr9:107866928:A:G	rs76061553	A	G	A	Sox3.mouse_HMG_3	14	1	+	4.220401366077099	-2.1615448003498114	TCTGAATTTCTTTCAAA
chr9	107870592	107870593	chr9:107870593:G:A	rs11794699	G	A	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	107895355	107895356	chr9:107895356:C:T	rs144409002	C	T	C	Sox3.mouse_HMG_3	31	0	-	0	0	.
chr9	107905940	107905941	chr9:107905941:C:T	rs12352069	C	T	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr9	107938820	107938821	chr9:107938821:T:C	rs10739250	T	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr9	108084225	108084226	chr9:108084226:C:G	rs55997283	C	G	c	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr9	108143382	108143383	chr9:108143383:G:A	rs567960	G	A	A	Sox3.mouse_HMG_3	9	1	-	5.916095196638269	5.923731873630016	AATGAATTTCAGTAAGA
chr9	108275014	108275015	chr9:108275015:A:G	rs1575450	A	G	G	Sox3.mouse_HMG_3	4	1	+	1.799172419497488	-4.58364430849658	TTTCAAAGTTATTCATA
chr9	108538137	108538138	chr9:108538138:A:G	rs75346385	A	G	A	Sox3.mouse_HMG_3	6	1	-	5.0226460060690155	-1.5853046354717821	TACGAATTACATTCACT
chr9	108538150	108538151	chr9:108538151:A:T	rs11787890	A	T	G	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr9	108673330	108673331	chr9:108673331:A:T	rs1994803	A	T	A	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr9	108673351	108673352	chr9:108673352:A:G	rs11794727	A	G	A	Sox3.mouse_HMG_3	2	1	-	1.7605347606096973	-4.845344357621234	AATGTATTGCAGTTATT
chr9	108682288	108682289	chr9:108682289:T:C	rs2417925	T	C	C	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr9	109060265	109060266	chr9:109060266:C:T	rs114492720	C	T	C	Sox3.mouse_HMG_3	3	1	-	1.6151096415487978	-4.166455245980436	GTGGGATTTCATTCATG
chr9	109263909	109263910	chr9:109263910:T:C	rs753997	T	C	T	Sox3.mouse_HMG_3	-20	0	-	0	0	.
chr9	109340902	109340903	chr9:109340903:C:G	rs7865731	C	G	c	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr9	109346053	109346054	chr9:109346054:A:G	rs12115792	A	G	A	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr9	109360890	109360891	chr9:109360891:C:G	rs10816802	C	G	C	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr9	109414463	109414464	chr9:109414464:T:C	rs796795671	T	C	T	Sox3.mouse_HMG_3	4	1	-	6.09331708804132	-0.2894996399527472	CAGGAATTTTATTCAGA
chr9	109730180	109730181	chr9:109730181:G:A	rs75081197	G	A	A	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr9	109733586	109733587	chr9:109733587:A:G	rs75331425	A	G	G	Sox3.mouse_HMG_3	16	1	-	5.764254126775788	4.897327387303509	GTTGAATGTCATTCCAT
chr9	109733596	109733597	chr9:109733597:A:T	rs80271008	A	T	A	Sox3.mouse_HMG_3	6	1	-	5.764254126775788	-0.9867973584056823	GTTGAATGTCATTCCAT
chr9	109793798	109793799	chr9:109793799:T:A	rs12376776	T	A	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr9	109972164	109972165	chr9:109972165:T:C	rs4978864	T	C	C	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr9	110050460	110050461	chr9:110050461:T:C	rs260216	T	C	T	Sox3.mouse_HMG_3	3	1	-	2.103616671453074	7.885181558982304	ATGAAATTGTATTCATG
chr9	110050464	110050465	chr9:110050465:A:G	rs117475894	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr9	110084252	110084253	chr9:110084253:C:T	rs7865721	C	T	C	Sox3.mouse_HMG_3	0	1	-	3.204401519669447	2.379117618523103	GGTGAATGATGGTCAGT
chr9	110089211	110089212	chr9:110089212:G:A	rs10512402	G	A	G	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr9	110286953	110286954	chr9:110286954:G:A	rs115177231	G	A	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr9	110446243	110446244	chr9:110446244:G:A	rs9792495	G	A	G	Sox3.mouse_HMG_3	8	1	-	1.872473686345142	1.6103539414290362	ATTGAATGCTTTTCCTA
chr9	110486485	110486486	chr9:110486486:C:T	rs62569941	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	110521233	110521234	chr9:110521234:G:A	rs72750769	G	A	G	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr9	110583311	110583312	chr9:110583312:T:C	rs149965031	T	C	T	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr9	110621619	110621620	chr9:110621620:G:A	rs16915190	G	A	A	Sox3.mouse_HMG_3	0	1	-	1.928709160717765	3.3835798060546294	CATGAAATCTAGACATA
chr9	110811901	110811902	chr9:110811902:G:A	rs56082112	G	A	A	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr9	111000520	111000521	chr9:111000521:T:C	rs17467596	T	C	T	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr9	111013390	111013391	chr9:111013391:T:C	rs10759481	T	C	C	Sox3.mouse_HMG_3	8	1	-	1.7746976593165917	2.397814306494405	CATTAATTAGATTCATC
chr9	111158318	111158319	chr9:111158319:A:G	rs12346772	A	G	A	Sox3.mouse_HMG_3	1	1	+	4.323386101598954	1.2232561651616616	TATGTATTCTCTTCATA
chr9	111161442	111161443	chr9:111161443:A:G	rs12350763	A	G	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr9	111412134	111412135	chr9:111412135:T:C	rs2418163	T	C	C	Sox3.mouse_HMG_3	8	1	-	2.014370895082128	2.637487542259941	GATGAATAACAGTAAAG
chr9	111516212	111516213	chr9:111516213:G:A	rs56396872	G	A	A	Sox3.mouse_HMG_3	-4	0	+	0	0	.
chr9	111620154	111620155	chr9:111620155:T:G	rs10817196	T	G	G	Sox3.mouse_HMG_3	2	1	+	2.719721620053146	-4.029258341818455	TATGTATTACAGTCACC
chr9	111620163	111620164	chr9:111620164:G:A	rs10817197	G	A	A	Sox3.mouse_HMG_3	11	1	+	2.719721620053146	-1.9304531057529908	TATGTATTACAGTCACC
chr9	111731541	111731542	chr9:111731542:T:A	rs12352855	T	A	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr9	111896126	111896127	chr9:111896127:C:T	rs1413218	C	T	T	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr9	111896142	111896143	chr9:111896143:T:C	rs148178432	T	C	T	Sox3.mouse_HMG_3	6	1	+	1.2414183349229229	-5.366532306617874	ATTGGATGGCAGTCTTA
chr9	111928132	111928133	chr9:111928133:T:C	rs3739701	T	C	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr9	111949128	111949129	chr9:111949129:C:T	rs382105	C	T	t	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr9	112050309	112050310	chr9:112050310:T:C	rs184736402	T	C	T	Sox3.mouse_HMG_3	2	1	+	1.1015175443880334	-5.504361573842899	GATGGCTGACAGTCAGG
chr9	112569453	112569454	chr9:112569454:A:C	rs144468871	A	C	A	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	112671093	112671094	chr9:112671094:G:C	rs4979145	G	C	C	Sox3.mouse_HMG_3	16	1	+	0.6687313788611531	-1.3851248768161477	CATGAAAGACATTAAGG
chr9	112756288	112756289	chr9:112756289:T:C	chr9:112756289:T:C	T	C	T	Sox3.mouse_HMG_3	16	1	-	1.2833609614253587	1.3193014178778844	AATGAATGAGAGTGAGA
chr9	112844448	112844449	chr9:112844449:G:A	rs10981526	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr9	112895182	112895183	chr9:112895183:C:G	rs547305739	C	G	C	Sox3.mouse_HMG_3	5	1	-	2.055109729725295	1.9365039873174483	CATGGGTGGCAGTCATT
chr9	113059358	113059359	chr9:113059359:G:C	rs111441672	G	C	-	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr9	113206096	113206097	chr9:113206097:C:T	rs4333682	C	T	C	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr9	113219263	113219264	chr9:113219264:T:C	chr9:113219264:T:C	T	C	T	Sox3.mouse_HMG_3	8	1	-	7.9177860766866965	8.540902723864509	CATGAAGGATATTCAAG
chr9	113383170	113383171	chr9:113383171:A:G	rs7024577	A	G	A	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr9	113523148	113523149	chr9:113523149:T:C	rs7037441	T	C	T	Sox3.mouse_HMG_3	-16	0	-	0	0	.
chr9	113586928	113586929	chr9:113586929:G:C	rs10981834	G	C	G	Sox3.mouse_HMG_3	-10	0	+	0	0	.
chr9	113681440	113681441	chr9:113681441:C:T	rs9644931	C	T	T	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	113955491	113955492	chr9:113955492:A:C	rs16936489	A	C	C	Sox3.mouse_HMG_3	29	0	-	0	0	.
chr9	114010762	114010763	chr9:114010763:T:C	rs115597503	T	C	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr9	114030941	114030942	chr9:114030942:A:G	rs139975709	A	G	A	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr9	114247440	114247441	chr9:114247441:C:T	rs1249712	C	T	C	Sox3.mouse_HMG_3	-2	0	+	0	0	.
chr9	114630088	114630089	chr9:114630089:T:C	rs78049219	T	C	T	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr9	114653831	114653832	chr9:114653832:T:C	rs10982358	T	C	T	Sox3.mouse_HMG_3	5	1	-	5.64187599842288	-0.8469589236479839	GTAGAATGACATTCAGT
chr9	114736191	114736192	chr9:114736192:A:G	rs72754566	A	G	A	Sox3.mouse_HMG_3	8	1	-	12.693854935294647	12.955974680210753	CTTGAATGTTATTCATT
chr9	114865288	114865289	chr9:114865289:G:T	rs7866342	G	T	T	Sox3.mouse_HMG_3	-8	0	+	0	0	.
chr9	114910865	114910866	chr9:114910866:A:C	rs6478118	A	C	A	Sox3.mouse_HMG_3	-9	0	+	0	0	.
chr9	114919589	114919590	chr9:114919590:G:T	rs10982450	G	T	G	Sox3.mouse_HMG_3	26	0	+	0	0	.
chr9	114936886	114936887	chr9:114936887:A:G	rs181105215	A	G	A	Sox3.mouse_HMG_3	11	1	-	1.8567395356825709	-4.227871290419374	CATAGATTACATTCATC
chr9	115062195	115062196	chr9:115062196:G:A	rs76627923	G	A	A	Sox3.mouse_HMG_3	24	0	-	0	0	.
chr9	115255820	115255821	chr9:115255821:T:C	rs10982634	T	C	T	Sox3.mouse_HMG_3	14	1	-	5.3547655258692215	-1.0271806405576889	TAAAAATGTCAGTCATG
chr9	115445464	115445465	chr9:115445465:G:C	rs2078713	G	C	G	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	115517371	115517372	chr9:115517372:C:T	rs72755374	C	T	C	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr9	115549055	115549056	chr9:115549056:A:G	rs10982791	A	G	A	Sox3.mouse_HMG_3	0	1	+	5.991278105873379	6.816562007019724	ATTGAAGTTTATTCATT
chr9	115549082	115549083	chr9:115549083:C:T	rs7026805	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr9	115549091	115549092	chr9:115549092:G:A	rs7027022	G	A	G	Sox3.mouse_HMG_3	36	0	+	0	0	.
chr9	115599886	115599887	chr9:115599887:G:A	rs10817802	G	A	A	Sox3.mouse_HMG_3	14	1	-	1.6088342334957615	1.6088342334957615	ATTGACTTGTATTCCTA
chr9	115650064	115650065	chr9:115650065:C:T	rs115081116	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr9	115713783	115713784	chr9:115713784:T:G	rs11999545	T	G	T	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr9	116057738	116057739	chr9:116057739:A:G	rs1314017	A	G	A	Sox3.mouse_HMG_3	5	1	-	8.916327361935458	8.916327361935458	AATGATTGACATTCAAA
chr9	116099820	116099821	chr9:116099821:G:A	rs6415825	G	A	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr9	116264682	116264683	chr9:116264683:T:C	rs10122701	T	C	C	Sox3.mouse_HMG_3	-13	0	+	0	0	.
chr9	116366295	116366296	chr9:116366296:A:G	rs7390972	A	G	A	Sox3.mouse_HMG_3	10	1	+	7.869807571953967	1.261856930413169	GCTGAATTACAGTCAAC
chr9	116572010	116572011	chr9:116572011:C:T	rs61654164	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr9	116720472	116720473	chr9:116720473:C:T	rs116763496	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr9	116830456	116830457	chr9:116830457:G:C	rs9802585	G	C	G	Sox3.mouse_HMG_3	-4	0	-	0	0	.
chr9	116873687	116873688	chr9:116873688:A:G	rs10983389	A	G	A	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr9	116936009	116936010	chr9:116936010:T:A	rs62562581	T	A	T	Sox3.mouse_HMG_3	31	0	+	0	0	.
chr9	117095289	117095290	chr9:117095290:G:A	rs11791251	G	A	G	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr9	117157751	117157752	chr9:117157752:G:T	rs7019490	G	T	G	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr9	117384145	117384146	chr9:117384146:C:G	rs7853500	C	G	G	Sox3.mouse_HMG_3	11	1	-	5.3966945229082635	0.7465197971021245	TATGATTTGCAGTCACG
chr9	118336536	118336537	chr9:118336537:G:A	rs7875397	G	A	G	Sox3.mouse_HMG_3	16	1	+	7.499916899105989	7.463976442653463	AGTGAATTATATGCATG
chr9	118413669	118413670	chr9:118413670:T:A	rs7023068	T	A	T	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr9	118594554	118594555	chr9:118594555:C:T	rs7855628	C	T	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr9	119198472	119198473	chr9:119198473:T:C	rs7030047	T	C	T	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr9	120137537	120137538	chr9:120137538:T:C	rs1157328	T	C	C	Sox3.mouse_HMG_3	5	1	-	2.516079843819956	-3.9727550782509082	GGAGAATTCTATTTATA
chr9	120540573	120540574	chr9:120540574:T:C	rs7875141	T	C	T	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr9	120693605	120693606	chr9:120693606:G:A	rs77491507	G	A	g	Sox3.mouse_HMG_3	26	0	-	0	0	.
chr9	120693617	120693618	chr9:120693618:T:C	rs71509536	T	C	T	Sox3.mouse_HMG_3	14	1	-	2.0368257791512	-4.345120387275712	AATGGATTCCAGACATT
chr9	120897025	120897026	chr9:120897026:T:C	rs1860823	T	C	C	Sox3.mouse_HMG_3	12	1	+	2.7995839393006	-3.3932696281001666	GATGACTTGCTTTCAAG
chr9	121638565	121638566	chr9:121638566:A:G	rs12352132	A	G	A	Sox3.mouse_HMG_3	5	1	+	2.9529098147251926	-3.5359251073456726	AGTGAATGCGAGTCAGC
chr9	121671695	121671696	chr9:121671696:G:A	rs12000798	G	A	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.
chr9	121779455	121779456	chr9:121779456:C:T	rs79724218	C	T	T	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr9	121820168	121820169	chr9:121820169:A:G	rs3923146	A	G	A	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr9	121862743	121862744	chr9:121862744:G:T	rs4538956	G	T	G	Sox3.mouse_HMG_3	-5	0	+	0	0	.
chr9	121993602	121993603	chr9:121993603:C:T	rs73562051	C	T	C	Sox3.mouse_HMG_3	-5	0	-	0	0	.
chr9	122016222	122016223	chr9:122016223:G:A	rs16911271	G	A	A	Sox3.mouse_HMG_3	6	1	+	1.3752870269186623	1.3752870269186623	AAAGAAGGGCAGTCAGA
chr9	122838746	122838747	chr9:122838747:A:T	rs3923435	A	T	A	Sox3.mouse_HMG_3	19	0	+	0	0	.
chr9	123046865	123046866	chr9:123046866:C:A	rs2095962	C	A	C	Sox3.mouse_HMG_3	23	0	+	0	0	.
chr9	123216646	123216647	chr9:123216647:T:C	rs375092429	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr9	123383282	123383283	chr9:123383283:G:T	rs149883994	G	T	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr9	123506022	123506023	chr9:123506023:T:C	rs2772206	T	C	C	Sox3.mouse_HMG_3	11	1	-	1.7140507398157583	6.364225465621896	GGTGAATGCTTATCATT
chr9	124034124	124034125	chr9:124034125:T:C	rs1555972	T	C	T	Sox3.mouse_HMG_3	6	1	+	4.053550239549946	-2.5544004019908515	AGTGAATGACAGACAGG
chr9	124046223	124046224	chr9:124046224:C:T	rs10114221	C	T	C	Sox3.mouse_HMG_3	20	0	+	0	0	.
chr9	124077750	124077751	chr9:124077751:A:T	rs875241	A	T	A	Sox3.mouse_HMG_3	30	0	+	0	0	.
chr9	124078124	124078125	chr9:124078125:C:T	rs921719156	C	T	C	Sox3.mouse_HMG_3	16	1	-	0.15733218238494828	0.12139172593242264	AATGAATGCCCTGCACG
chr9	124259353	124259354	chr9:124259354:C:T	rs577664074	C	T	C	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr9	124259402	124259403	chr9:124259403:T:A	rs560174925	T	A	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr9	124365530	124365531	chr9:124365531:A:G	rs6478658	A	G	G	Sox3.mouse_HMG_3	-18	0	+	0	0	.
chr9	124393275	124393276	chr9:124393276:A:G	rs149977110	A	G	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr9	124459144	124459145	chr9:124459145:C:T	rs4838179	C	T	T	Sox3.mouse_HMG_3	8	1	+	6.433294023941428	6.171174279025322	TATGAATGCGCTTCATA
chr9	124595017	124595018	chr9:124595018:T:C	rs746077569	T	C	T	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr9	124632397	124632398	chr9:124632398:T:C	rs12682770	T	C	T	Sox3.mouse_HMG_3	10	1	-	2.3099218884393933	-4.298028753101404	GAGAAATGTTAGTCAAA
chr9	125433377	125433378	chr9:125433378:C:A	rs1268539	C	A	A	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr9	125558883	125558884	chr9:125558884:C:T	rs10986794	C	T	C	Sox3.mouse_HMG_3	34	0	-	0	0	.
chr9	125613126	125613127	chr9:125613127:T:C	rs12346310	T	C	T	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr9	125649574	125649575	chr9:125649575:G:A	rs513568	G	A	A	Sox3.mouse_HMG_3	-1	0	-	0	0	.
chr9	125752186	125752187	chr9:125752187:T:A	rs10986876	T	A	T	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr9	125842559	125842560	chr9:125842560:G:A	rs12339544	G	A	G	Sox3.mouse_HMG_3	0	1	+	7.001634980852043	6.176351079705698	GCTTAATGGCATTCATT
chr9	125906435	125906436	chr9:125906436:A:G	rs10987017	A	G	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr9	125992024	125992025	chr9:125992025:A:G	rs72752699	A	G	A	Sox3.mouse_HMG_3	5	1	+	1.9417280339769205	-4.547106888093944	AATGAATGGGGGTCAGG
chr9	126034953	126034954	chr9:126034954:T:C	rs12000806	T	C	C	Sox3.mouse_HMG_3	25	0	+	0	0	.
chr9	126299098	126299099	chr9:126299099:A:T	rs7857077	A	T	A	Sox3.mouse_HMG_3	1	1	+	1.4640154787763717	-1.5060613294127203	GATGAATTCCACACAAC
chr9	126320655	126320656	chr9:126320656:C:T	rs12552388	C	T	C	Sox3.mouse_HMG_3	-12	0	-	0	0	.
chr9	126570812	126570813	chr9:126570813:T:A	rs182559180	T	A	T	Sox3.mouse_HMG_3	14	1	-	4.023863037201592	-2.358083129225318	AATGAATGGCAGGGATG
chr9	126806568	126806569	chr9:126806569:A:T	rs73668417	A	T	A	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr9	126806604	126806605	chr9:126806605:T:A	rs112759044	T	A	A	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr9	126854973	126854974	chr9:126854974:C:T	rs1463810	C	T	T	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr9	126977163	126977164	chr9:126977164:G:A	rs116446306	G	A	G	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr9	127074331	127074332	chr9:127074332:A:C	rs1766231	A	C	C	Sox3.mouse_HMG_3	14	1	+	6.3971887255089355	0.015242559082025209	ATTGAATTCTATTTATT
chr9	128082464	128082465	chr9:128082465:C:T	rs7036499	C	T	C	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr9	128370478	128370479	chr9:128370479:T:C	rs7019382	T	C	T	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr9	128407248	128407249	chr9:128407249:T:C	rs12351561	T	C	T	Sox3.mouse_HMG_3	6	1	+	0.2920592493345522	-6.315891392206245	GCTGAATGGTGGTCACC
chr9	128635909	128635910	chr9:128635910:G:A	rs117258756	G	A	G	Sox3.mouse_HMG_3	-10	0	-	0	0	.
chr9	129289018	129289019	chr9:129289019:A:G	rs10988301	A	G	A	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr9	129417949	129417950	chr9:129417950:T:C	rs4837365	T	C	C	Sox3.mouse_HMG_3	14	1	-	4.755649495420016	-1.6262966710068945	CATGAATGGTATCTATG
chr9	129466283	129466284	chr9:129466284:A:G	rs1147359	A	G	A	Sox3.mouse_HMG_3	-2	0	-	0	0	.
chr9	129537950	129537951	chr9:129537951:T:C	rs35265276	T	C	T	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr9	129865044	129865045	chr9:129865045:C:T	rs913318	C	T	C	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr9	129866184	129866185	chr9:129866185:A:G	rs3892296	A	G	G	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr9	129866203	129866204	chr9:129866204:T:A	rs2417156	T	A	T	Sox3.mouse_HMG_3	12	1	+	-0.40247590381284115	-6.51528676354007	ACGGAGTGGCAGTCATG
chr9	130020159	130020160	chr9:130020160:G:A	rs12001851	G	A	G	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr9	130030724	130030725	chr9:130030725:T:G	rs78400266	T	G	T	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr9	130096903	130096904	chr9:130096904:T:G	rs10988591	T	G	T	Sox3.mouse_HMG_3	16	1	-	1.3521802252394486	-0.6657355739853266	AATGAATGAGATGCACA
chr9	130171699	130171700	chr9:130171700:G:T	rs7869467	G	T	G	Sox3.mouse_HMG_3	34	0	+	0	0	.
chr9	130245180	130245181	chr9:130245181:G:T	rs7862226	G	T	G	Sox3.mouse_HMG_3	17	0	+	0	0	.
chr9	130396513	130396514	chr9:130396514:G:A	rs74485877	G	A	G	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr9	130741228	130741229	chr9:130741229:G:A	rs2789767	G	A	A	Sox3.mouse_HMG_3	22	0	+	0	0	.
chr9	130913062	130913063	chr9:130913063:T:C	rs10113902	T	C	C	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr9	130913077	130913078	chr9:130913078:G:C	rs6597653	G	C	C	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr9	130913086	130913087	chr9:130913087:A:G	rs10901301	A	G	A	Sox3.mouse_HMG_3	12	1	-	2.441145950682418	-3.751707616718349	CAAGAATGTTATTAAAA
chr9	130921306	130921307	chr9:130921307:T:C	rs6597655	T	C	C	Sox3.mouse_HMG_3	27	0	+	0	0	.
chr9	130935856	130935857	chr9:130935857:A:G	rs7865030	A	G	G	Sox3.mouse_HMG_3	5	1	+	3.67954246874893	-2.809292453321934	AATGAATCTTAGTCGTG
chr9	131253963	131253964	chr9:131253964:T:G	rs151301928	T	G	T	Sox3.mouse_HMG_3	-7	0	-	0	0	.
chr9	131449479	131449480	chr9:131449480:T:G	rs143678012	T	G	T	Sox3.mouse_HMG_3	21	0	+	0	0	.
chr9	131517912	131517913	chr9:131517913:G:A	rs72757656	G	A	G	Sox3.mouse_HMG_3	0	1	+	2.605342209647909	1.7800583085015627	GGAAAATGACAGTCATG
chr9	131585841	131585842	chr9:131585842:G:C	rs80299620	G	C	G	Sox3.mouse_HMG_3	33	0	-	0	0	.
chr9	131620581	131620582	chr9:131620582:C:T	rs2282009	C	T	T	Sox3.mouse_HMG_3	35	0	-	0	0	.
chr9	131733911	131733912	chr9:131733912:G:A	rs182792984	G	A	G	Sox3.mouse_HMG_3	-3	0	-	0	0	.
chr9	131893154	131893155	chr9:131893155:T:C	rs4740330	T	C	C	Sox3.mouse_HMG_3	15	1	+	1.7289445940759267	-2.9854488176391416	TTTTAATGAGAGTCATG
chr9	131893172	131893173	chr9:131893173:C:T	rs117277919	C	T	C	Sox3.mouse_HMG_3	33	0	+	0	0	.
chr9	131910930	131910931	chr9:131910931:T:C	rs79791864	T	C	T	Sox3.mouse_HMG_3	-19	0	+	0	0	.
chr9	131938073	131938074	chr9:131938074:G:T	rs13293524	G	T	T	Sox3.mouse_HMG_3	18	0	+	0	0	.
chr9	131950733	131950734	chr9:131950734:A:C	rs6597539	A	C	C	Sox3.mouse_HMG_3	10	1	-	3.513389616277098	3.656490459917771	GATGAATGACTATCAAA
chr9	132159230	132159231	chr9:132159231:T:G	rs11243648	T	G	G	Sox3.mouse_HMG_3	-20	0	+	0	0	.
chr9	132298896	132298897	chr9:132298897:T:C	rs10793913	T	C	C	Sox3.mouse_HMG_3	35	0	+	0	0	.
chr9	132477458	132477459	chr9:132477459:C:T	rs10120692	C	T	c	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr9	132771633	132771634	chr9:132771634:C:A	rs10901212	C	A	a	Sox3.mouse_HMG_3	21	0	-	0	0	.
chr9	133075764	133075765	chr9:133075765:A:T	rs526855	A	T	t	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr9	133127390	133127391	chr9:133127391:C:G	rs78325152	C	G	C	Sox3.mouse_HMG_3	32	0	+	0	0	.
chr9	133211234	133211235	chr9:133211235:C:G	rs17150306	C	G	C	Sox3.mouse_HMG_3	7	1	+	2.008065784631598	8.261509906838988	GATGAATCTCAGTTAAG
chr9	133272226	133272227	chr9:133272227:T:C	rs967002727	T	C	t	Sox3.mouse_HMG_3	1	1	-	5.920549869385458	2.820419932948165	AATGAATTATTTTCAGT
chr9	133304380	133304381	chr9:133304381:G:A	rs62574655	G	A	g	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr9	133306451	133306452	chr9:133306452:T:C	rs554710	T	C	N	Sox3.mouse_HMG_3	2	1	+	0.4437512210035943	-6.162127897227337	GCTGACTTCCCTTCATG
chr9	133528374	133528375	chr9:133528375:G:A	rs66938753	G	A	G	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr9	133533195	133533196	chr9:133533196:T:C	rs58051082	T	C	T	Sox3.mouse_HMG_3	36	0	-	0	0	.
chr9	133735548	133735549	chr9:133735549:C:A	rs76433882	C	A	c	Sox3.mouse_HMG_3	19	0	-	0	0	.
chr9	133765628	133765629	chr9:133765629:C:T	rs591866	C	T	T	Sox3.mouse_HMG_3	-9	0	-	0	0	.
chr9	133783323	133783324	chr9:133783324:T:A	rs2428107	T	A	A	Sox3.mouse_HMG_3	-17	0	-	0	0	.
chr9	133816288	133816289	chr9:133816289:T:C	rs62576519	T	C	T	Sox3.mouse_HMG_3	6	1	+	5.040354208834422	-1.567596432706373	TCTTAATGATATTCAAG
chr9	133856304	133856305	chr9:133856305:C:A	rs3819503	C	A	A	Sox3.mouse_HMG_3	-6	0	-	0	0	.
chr9	133907785	133907786	chr9:133907786:C:T	rs79577142	C	T	C	Sox3.mouse_HMG_3	9	1	+	6.555027658325653	6.5626643353173995	AGAGAATGCCAGTCATT
chr9	133907790	133907791	chr9:133907791:A:G	rs61642918	A	G	A	Sox3.mouse_HMG_3	14	1	+	6.555027658325653	0.17308149189874233	AGAGAATGCCAGTCATT
chr9	134208470	134208471	chr9:134208471:C:T	rs4917376	C	T	C	Sox3.mouse_HMG_3	-19	0	-	0	0	.
chr9	134284485	134284486	chr9:134284486:G:A	rs72619339	G	A	G	Sox3.mouse_HMG_3	-1	0	+	0	0	.
chr9	134473878	134473879	chr9:134473879:C:T	rs1265797304	C	T	C	Sox3.mouse_HMG_3	-15	0	-	0	0	.
chr9	134535595	134535596	chr9:134535596:T:C	rs3132315	T	C	C	Sox3.mouse_HMG_3	-6	0	+	0	0	.
chr9	134544509	134544510	chr9:134544510:C:T	rs548053750	C	T	C	Sox3.mouse_HMG_3	30	0	-	0	0	.
chr9	134544521	134544522	chr9:134544522:T:C	rs116082378	T	C	C	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr9	134601976	134601977	chr9:134601977:A:G	rs371937500	A	G	A	Sox3.mouse_HMG_3	-12	0	+	0	0	.
chr9	134611725	134611726	chr9:134611726:A:C	rs73555141	A	C	A	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr9	134773598	134773599	chr9:134773599:A:G	rs4842164	A	G	G	Sox3.mouse_HMG_3	23	0	-	0	0	.
chr9	134939357	134939358	chr9:134939358:G:T	rs7849296	G	T	T	Sox3.mouse_HMG_3	28	0	-	0	0	.
chr9	135123564	135123565	chr9:135123565:A:G	rs899840	A	G	A	Sox3.mouse_HMG_3	-7	0	+	0	0	.
chr9	135220234	135220235	chr9:135220235:T:G	rs11103758	T	G	T	Sox3.mouse_HMG_3	18	0	-	0	0	.
chr9	135414517	135414518	chr9:135414518:A:G	rs7851809	A	G	G	Sox3.mouse_HMG_3	32	0	-	0	0	.
chr9	135422122	135422123	chr9:135422123:G:A	rs34540262	G	A	G	Sox3.mouse_HMG_3	17	0	-	0	0	.
chr9	135494710	135494711	chr9:135494711:T:C	rs4841990	T	C	C	Sox3.mouse_HMG_3	27	0	-	0	0	.
chr9	135494750	135494751	chr9:135494751:G:A	rs4841991	G	A	G	Sox3.mouse_HMG_3	-13	0	-	0	0	.
chr9	135585185	135585186	chr9:135585186:T:C	rs7019040	T	C	-	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr9	135585185	135585186	chr9:135585186:T:G	chr9:135585186:T:G	T	G	-	Sox3.mouse_HMG_3	22	0	-	0	0	.
chr9	135585203	135585204	chr9:135585204:G:A	rs12338725	G	A	-	Sox3.mouse_HMG_3	4	1	-	-0.40812691285529046	-0.265026069214618	GCTGCGTGGCATTCAAG
chr9	135585215	135585216	chr9:135585216:A:G	rs7046577	A	G	-	Sox3.mouse_HMG_3	-8	0	-	0	0	.
chr9	135811919	135811920	chr9:135811920:C:T	rs775215108	C	T	C	Sox3.mouse_HMG_3	28	0	+	0	0	.
chr9	135811920	135811921	chr9:135811921:G:A	rs538393480	G	A	G	Sox3.mouse_HMG_3	29	0	+	0	0	.
chr9	135817150	135817151	chr9:135817151:G:A	rs36056648	G	A	G	Sox3.mouse_HMG_3	25	0	-	0	0	.
chr9	136076696	136076697	chr9:136076697:T:C	rs4842104	T	C	T	Sox3.mouse_HMG_3	20	0	-	0	0	.
chr9	136246108	136246109	chr9:136246109:A:G	rs782513851	A	G	A	Sox3.mouse_HMG_3	-16	0	+	0	0	.
chr9	136283557	136283558	chr9:136283558:C:T	rs945416731	C	T	T	Sox3.mouse_HMG_3	2	1	-	1.4771549273067184	2.498806174838699	GCGGAATCATATTCATG
chr9	136565915	136565916	chr9:136565916:T:C	rs973859044	T	C	T	Sox3.mouse_HMG_3	1	1	-	3.710708500163345	0.6105785637260531	CATAAATCATATTCATT
chr9	137785620	137785621	chr9:137785621:T:C	rs7390131	T	C	T	Sox3.mouse_HMG_3	-18	0	-	0	0	.
chr9	137796830	137796831	chr9:137796831:A:G	rs12238423	A	G	G	Sox3.mouse_HMG_3	-11	0	+	0	0	.