chr1	633070	633071	chr1:633071:C:T	rs78032279	C	T	.	Sox3.mouse_HMG_2	11	1	+	8.00809343305933	14.692467632519662	CATCAATGGTACTGAAC
chr1	1248016	1248017	chr1:1248017:C:T	rs78446752	C	T	C	Sox3.mouse_HMG_2	14	1	-	0.7108149610971204	4.028881230868722	GCTCATTGCCAGTGGGT
chr1	1381238	1381239	chr1:1381239:C:T	rs1014362748	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr1	1574075	1574076	chr1:1574076:A:C	rs186792539	A	C	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	2372126	2372127	chr1:2372127:A:G	rs2840534	A	G	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr1	2376784	2376785	chr1:2376785:G:C	rs12404555	G	C	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr1	2402821	2402822	chr1:2402822:G:T	rs72642191	G	T	g	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr1	2541698	2541699	chr1:2541699:C:T	rs374224216	C	T	.	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr1	2636985	2636986	chr1:2636986:T:C	rs4648661	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	2895248	2895249	chr1:2895249:G:A	rs1456465	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	3057011	3057012	chr1:3057012:G:A	rs1109251	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr1	3112008	3112009	chr1:3112009:A:T	rs542281671	A	T	A	Sox3.mouse_HMG_2	10	1	+	1.609899414679892	-5.298855364635329	GATAAATGTCAGTGCGG
chr1	3186533	3186534	chr1:3186534:T:C	rs182731312	T	C	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	3759394	3759395	chr1:3759395:T:G	rs12131045	T	G	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr1	4172456	4172457	chr1:4172457:C:T	rs12405392	C	T	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	4172478	4172479	chr1:4172479:A:G	rs56827341	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.3082222284091705	-0.0810592059687197	CCTCCATGGTATTGAAG
chr1	4213781	4213782	chr1:4213782:T:C	rs10753372	T	C	T	Sox3.mouse_HMG_2	16	1	+	6.570962798043927	4.967969748383476	GATCAACTCCAGTGAAT
chr1	4470380	4470381	chr1:4470381:T:C	rs6426415	T	C	C	Sox3.mouse_HMG_2	5	1	-	4.250886593222065	-2.1383948411558253	GGTCAATTCTAGGGAGA
chr1	4524257	4524258	chr1:4524258:A:T	rs241241	A	T	A	Sox3.mouse_HMG_2	1	1	+	3.4346995971177843	0.739476038064488	CATCAATGGTCATGAAT
chr1	4588801	4588802	chr1:4588802:C:T	rs549150	C	T	T	Sox3.mouse_HMG_2	3	1	+	5.099828519734129	0.24297264451190842	CTACAATTGTATTGCTG
chr1	4796260	4796261	chr1:4796261:C:T	rs77293842	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	5035153	5035154	chr1:5035154:T:C	rs79651090	T	C	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr1	5274875	5274876	chr1:5274876:A:T	rs12729227	A	T	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	5368527	5368528	chr1:5368528:C:T	rs747083468	C	T	c	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr1	5530386	5530387	chr1:5530387:T:C	rs9661864	T	C	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr1	5586141	5586142	chr1:5586142:G:A	rs12036552	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr1	5748645	5748646	chr1:5748646:T:C	rs112126941	T	C	C	Sox3.mouse_HMG_2	6	1	+	1.5601716246784445	-4.829109809699444	GATCCATGTTCTTGAGC
chr1	5748670	5748671	chr1:5748671:T:C	rs114988275	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr1	5940217	5940218	chr1:5940218:T:C	rs57752624	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.9203470659958324	-2.4689343683820577	GATGAATGCCATTGTCT
chr1	6028303	6028304	chr1:6028304:G:A	rs11121065	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	6144100	6144101	chr1:6144101:G:A	rs17436816	G	A	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr1	6206933	6206934	chr1:6206934:G:C	rs11121487	G	C	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr1	6762349	6762350	chr1:6762350:T:A	rs35916265	T	A	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr1	6947679	6947680	chr1:6947680:T:C	rs11586453	T	C	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	7007908	7007909	chr1:7007909:C:T	rs6577400	C	T	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	7426256	7426257	chr1:7426257:T:C	rs12088178	T	C	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr1	7477439	7477440	chr1:7477440:G:A	rs1193182	G	A	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr1	7829880	7829881	chr1:7829881:C:T	rs2640908	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr1	7955499	7955500	chr1:7955500:A:G	rs161799	A	G	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr1	8015873	8015874	chr1:8015874:A:G	rs2294889	A	G	A	Sox3.mouse_HMG_2	2	1	-	4.586759389663763	-1.7801379168619809	AATCATTTTTAGTGTTT
chr1	8121538	8121539	chr1:8121539:T:C	rs4908731	T	C	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr1	8126778	8126779	chr1:8126779:C:A	rs61774165	C	A	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr1	8154713	8154714	chr1:8154714:T:C	rs7339868	T	C	C	Sox3.mouse_HMG_2	0	1	-	2.6785595826242727	4.375051876326935	ACACAAAGTCAGTGATG
chr1	8212465	8212466	chr1:8212466:G:A	rs425371	G	A	A	Sox3.mouse_HMG_2	1	1	+	6.892261885196979	8.898649827216438	CGTCAGTTCTAGTGATG
chr1	8212476	8212477	chr1:8212477:T:A	rs389669	T	A	T	Sox3.mouse_HMG_2	12	1	+	6.892261885196979	0.8412947472661624	CGTCAGTTCTAGTGATG
chr1	8424468	8424469	chr1:8424469:A:G	rs57310340	A	G	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr1	8719370	8719371	chr1:8719371:C:A	rs116819670	C	A	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr1	8955615	8955616	chr1:8955616:G:C	rs12741044	G	C	G	Sox3.mouse_HMG_2	3	1	-	2.5230519627212264	-3.5274673471680713	GTGCAAGGTCAGTGATG
chr1	9083144	9083145	chr1:9083145:A:G	rs12748352	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr1	9083160	9083161	chr1:9083161:G:A	rs75856734	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr1	9125600	9125601	chr1:9125601:G:A	rs4908812	G	A	G	Sox3.mouse_HMG_2	13	1	+	3.8361370931080607	-2.2155014110782507	AATCAGTGTTAGCGATG
chr1	9187259	9187260	chr1:9187260:C:A	rs4141449	C	A	a	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr1	9356091	9356092	chr1:9356092:G:A	rs9435243	G	A	G	Sox3.mouse_HMG_2	15	1	+	2.0684681830482115	2.5022056343095525	GCTCAATGTCTTTGTGA
chr1	9439186	9439187	chr1:9439187:G:A	rs9787285	G	A	G	Sox3.mouse_HMG_2	12	1	+	1.4955868543142534	1.8312083890551527	CAACAATGCCAGGGGTC
chr1	10016152	10016153	chr1:10016153:C:T	rs979830189	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr1	10420808	10420809	chr1:10420809:C:T	rs12755363	C	T	-	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	10858495	10858496	chr1:10858496:T:G	rs111682832	T	G	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr1	10974087	10974088	chr1:10974088:T:C	rs12081176	T	C	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	11012158	11012159	chr1:11012159:T:G	rs774558919	T	G	t	Sox3.mouse_HMG_2	9	1	+	5.508008298841961	-0.47597296104235914	GAACAAAGTTATTGTTT
chr1	11139091	11139092	chr1:11139092:T:C	rs2275528	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	11449497	11449498	chr1:11449498:C:G	rs60208389	C	G	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr1	11498143	11498144	chr1:11498144:G:C	rs7537387	G	C	C	Sox3.mouse_HMG_2	0	1	-	9.451016282631604	9.755649800155792	CAACAATTGCAGTGAAG
chr1	11530117	11530118	chr1:11530118:C:T	rs67602684	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr1	11661891	11661892	chr1:11661892:C:T	rs2294640	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr1	11682016	11682017	chr1:11682017:C:T	rs2233004	C	T	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr1	11776384	11776385	chr1:11776385:G:A	rs6659541	G	A	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr1	11838788	11838789	chr1:11838789:A:G	rs759858201	A	G	A	Sox3.mouse_HMG_2	9	1	-	3.0957756823687617	2.403123139496802	GTTCAAAGCTAGTGTTG
chr1	11838791	11838792	chr1:11838792:T:G	rs198409	T	G	T	Sox3.mouse_HMG_2	6	1	-	3.0957756823687617	3.6145694757839286	GTTCAAAGCTAGTGTTG
chr1	11838801	11838802	chr1:11838802:G:A	rs55741089	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr1	11838811	11838812	chr1:11838812:C:T	rs551894492	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	11908384	11908385	chr1:11908385:G:A	rs369682507	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	11908388	11908389	chr1:11908389:T:C	rs527489760	T	C	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr1	11908391	11908392	chr1:11908392:G:A	rs76892591	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr1	11908397	11908398	chr1:11908398:A:G	rs1015002471	A	G	A	Sox3.mouse_HMG_2	4	1	+	8.651905836492116	2.2626244021142248	TATCAATTGTATTGCAT
chr1	11908402	11908403	chr1:11908403:T:C	rs556216716	T	C	t	Sox3.mouse_HMG_2	9	1	+	8.651905836492116	7.959253293620158	TATCAATTGTATTGCAT
chr1	11908407	11908408	chr1:11908408:C:T	rs927069180	C	T	T	Sox3.mouse_HMG_2	14	1	+	8.651905836492116	10.665052930332116	TATCAATTGTATTGCAT
chr1	11908409	11908410	chr1:11908410:T:C	rs140516253	T	C	T	Sox3.mouse_HMG_2	16	1	+	8.651905836492116	7.048912786831665	TATCAATTGTATTGCAT
chr1	11908417	11908418	chr1:11908418:C:T	rs191029441	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr1	11908422	11908423	chr1:11908423:A:G	rs540419243	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr1	11908429	11908430	chr1:11908430:T:G	rs145860767	T	G	t	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr1	11979870	11979871	chr1:11979871:G:C	rs564944035	G	C	g	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	12080378	12080379	chr1:12080379:T:C	rs78469249	T	C	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr1	12096178	12096179	chr1:12096179:A:G	rs11121855	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.125303062691434	-0.2639783716864535	AGCCAATTATATTGATG
chr1	12532888	12532889	chr1:12532889:G:A	rs12408667	G	A	g	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	12670403	12670404	chr1:12670404:G:A	rs1857539	G	A	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr1	12697648	12697649	chr1:12697649:T:C	rs3010951	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr1	12859107	12859108	chr1:12859108:G:T	rs9661554	G	T	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	13227968	13227969	chr1:13227969:C:T	rs373542647	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr1	13422700	13422701	chr1:13422701:A:G	rs1037900867	A	G	A	Sox3.mouse_HMG_2	4	1	+	3.9638428453314845	-2.4254385890464025	ATTCATTTCCAGTGATT
chr1	13422702	13422703	chr1:13422703:T:C	rs899454463	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.9638428453314845	-2.4254385890464043	ATTCATTTCCAGTGATT
chr1	13665984	13665985	chr1:13665985:A:G	rs10492979	A	G	A	Sox3.mouse_HMG_2	4	1	+	3.929937477601792	-2.4593439567760984	CGTCAATGTCATTTCTG
chr1	13693271	13693272	chr1:13693272:G:A	rs3001731	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	13931171	13931172	chr1:13931172:A:G	rs6685990	A	G	A	Sox3.mouse_HMG_2	1	1	+	9.479861786369804	7.473473844350348	AATTAATGTTAGTGAAT
chr1	14085310	14085311	chr1:14085311:T:C	rs72861288	T	C	T	Sox3.mouse_HMG_2	12	1	+	6.895799331465727	0.8448321935349103	AATCAATTTCAGTGTAC
chr1	14113796	14113797	chr1:14113797:A:G	rs12026570	A	G	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr1	14113798	14113799	chr1:14113799:A:T	rs12026571	A	T	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr1	14142405	14142406	chr1:14142406:T:C	rs10803463	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	14151448	14151449	chr1:14151449:G:A	rs929125	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	14281319	14281320	chr1:14281320:A:G	rs116258744	A	G	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr1	14282526	14282527	chr1:14282527:G:A	rs61771844	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	14419898	14419899	chr1:14419899:G:A	rs535008170	G	A	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr1	14419910	14419911	chr1:14419911:T:C	rs79414274	T	C	T	Sox3.mouse_HMG_2	11	1	+	2.945952301043731	-3.7384218984166036	CAACAATGGGATTTATT
chr1	14437421	14437422	chr1:14437422:C:T	rs3927512	C	T	T	Sox3.mouse_HMG_2	11	1	-	1.8348229441199946	-2.7366611842132897	CATCATTTCTCGTGATT
chr1	14815444	14815445	chr1:14815445:G:A	rs76100808	G	A	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr1	14836849	14836850	chr1:14836850:C:T	rs79675220	C	T	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	14863373	14863374	chr1:14863374:T:C	rs3765383	T	C	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr1	14863380	14863381	chr1:14863381:G:A	rs3765382	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	14926473	14926474	chr1:14926474:T:C	rs79388703	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr1	15186635	15186636	chr1:15186636:A:G	rs12407705	A	G	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr1	15242924	15242925	chr1:15242925:T:C	rs10927746	T	C	T	Sox3.mouse_HMG_2	1	1	-	7.107977281248353	5.101589339228896	AATCCATTTTATTGAAA
chr1	15328662	15328663	chr1:15328663:C:T	rs75410129	C	T	C	Sox3.mouse_HMG_2	11	1	-	1.9687918375581057	-2.6026922907751793	GCTCAAAGTCAGTAATT
chr1	15328674	15328675	chr1:15328675:G:A	rs34425022	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr1	15356912	15356913	chr1:15356913:T:A	rs11582182	T	A	t	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr1	15406296	15406297	chr1:15406297:A:G	rs733887	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.047841348988109	-4.341440085389783	GATCAATCGTCTTGGTT
chr1	15628731	15628732	chr1:15628732:G:C	rs7545782	G	C	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr1	15827064	15827065	chr1:15827065:T:G	rs56233020	T	G	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	15827091	15827092	chr1:15827092:A:G	rs56000644	A	G	G	Sox3.mouse_HMG_2	10	1	+	4.178906964299348	-2.7298478150158707	TATTTATGTTAGTGATC
chr1	15827103	15827104	chr1:15827104:C:T	rs56360364	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr1	15950040	15950041	chr1:15950041:A:G	rs11489779	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.717883514108534	-2.9664906853518014	TAGGAATGTCATTGAGA
chr1	15950057	15950058	chr1:15950058:C:T	rs11489780	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr1	16606014	16606015	chr1:16606015:G:A	rs4661392	G	A	.	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr1	16606040	16606041	chr1:16606041:C:T	rs1746695	C	T	.	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr1	16606472	16606473	chr1:16606473:G:A	rs4661858	G	A	.	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	16616877	16616878	chr1:16616878:A:T	rs12047692	A	T	.	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	16723458	16723459	chr1:16723459:C:T	rs16854927	C	T	.	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	16727520	16727521	chr1:16727521:C:T	rs1301043315	C	T	.	Sox3.mouse_HMG_2	13	1	-	2.1910018510342897	-3.860636653152022	CAACAATTGCATGGGTC
chr1	16727526	16727527	chr1:16727527:A:C	rs866578967	A	C	.	Sox3.mouse_HMG_2	7	1	-	2.1910018510342897	3.316893064879536	CAACAATTGCATGGGTC
chr1	17097637	17097638	chr1:17097638:T:C	rs2244949	T	C	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr1	17289873	17289874	chr1:17289874:C:T	rs74061529	C	T	C	Sox3.mouse_HMG_2	15	1	-	1.0896626223998405	1.5234000736611817	GATAATTGGCATTGAGA
chr1	17503459	17503460	chr1:17503460:T:C	rs11203414	T	C	T	Sox3.mouse_HMG_2	12	1	+	3.9263090590363365	-2.1246580788944796	GGCCAATTATAGTGAAA
chr1	17712064	17712065	chr1:17712065:T:C	rs4920624	T	C	T	Sox3.mouse_HMG_2	1	1	-	4.655407473504889	2.6490195314854303	CATCAGTTGCAGTGACA
chr1	17837097	17837098	chr1:17837098:A:C	rs498244	A	C	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr1	17923248	17923249	chr1:17923249:C:T	rs12092756	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr1	18079046	18079047	chr1:18079047:A:G	rs11260973	A	G	A	Sox3.mouse_HMG_2	6	1	-	1.4553083628066692	-4.93397307157122	CCTCCATGCCATGGATT
chr1	18079061	18079062	chr1:18079062:A:G	rs143276042	A	G	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr1	18211279	18211280	chr1:18211280:C:T	rs2168388	C	T	C	Sox3.mouse_HMG_2	13	1	-	1.9087427081832273	-4.142895796003085	GATCAAAGCTCTTGAGT
chr1	18435479	18435480	chr1:18435480:C:T	rs145003780	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr1	18448198	18448199	chr1:18448199:A:G	rs2946535	A	G	G	Sox3.mouse_HMG_2	10	1	+	8.922904645326685	2.0141498660114654	AGACAATGGCATTGAAT
chr1	18509710	18509711	chr1:18509711:C:T	rs61760679	C	T	C	Sox3.mouse_HMG_2	10	1	-	4.53928406902883	11.448038848344051	CATCAAGGTCGTTGATG
chr1	19451342	19451343	chr1:19451343:A:G	rs16862798	A	G	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	19505574	19505575	chr1:19505575:A:G	rs115908591	A	G	A	Sox3.mouse_HMG_2	14	1	-	5.412065834228436	3.398918740388436	CATCATTTCCATTGTTT
chr1	19736301	19736302	chr1:19736302:G:T	rs192147021	G	T	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr1	20069374	20069375	chr1:20069375:G:A	rs528614	G	A	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr1	20071549	20071550	chr1:20071550:A:G	rs513246	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr1	20239010	20239011	chr1:20239011:T:C	rs74057261	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.2485737569851105	-4.140707677392779	GGTCAATTCAATTGGCT
chr1	20268294	20268295	chr1:20268295:C:T	rs10799623	C	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	20322662	20322663	chr1:20322663:A:G	rs10916765	A	G	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr1	20417052	20417053	chr1:20417053:C:T	rs10916793	C	T	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr1	20610166	20610167	chr1:20610167:C:T	rs12135846	C	T	C	Sox3.mouse_HMG_2	2	1	-	1.2743434873972879	3.146561378293641	GGGCACTGTCATTGGTG
chr1	20661162	20661163	chr1:20661163:C:T	rs189424476	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr1	20884481	20884482	chr1:20884482:G:C	rs115762292	G	C	G	Sox3.mouse_HMG_2	3	1	-	5.731698659722831	-0.3188206501664666	CATCATTGACAGTGAAG
chr1	21082284	21082285	chr1:21082285:G:C	rs1211820330	G	C	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr1	21090533	21090534	chr1:21090534:T:C	rs61779075	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	21177786	21177787	chr1:21177787:G:A	rs74058841	G	A	G	Sox3.mouse_HMG_2	8	1	+	3.0873244590656355	1.8685340743211385	GCACAGTGGCATTGAGT
chr1	21490871	21490872	chr1:21490872:A:G	rs75824579	A	G	.	Sox3.mouse_HMG_2	11	1	-	3.2486690723161358	-3.4357051271442005	TGAGAATGTTATTGAGC
chr1	21490900	21490901	chr1:21490901:A:G	rs72659147	A	G	.	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr1	21587541	21587542	chr1:21587542:T:C	rs12117249	T	C	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr1	21819684	21819685	chr1:21819685:G:T	rs113947818	G	T	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr1	21887915	21887916	chr1:21887916:G:A	rs185397994	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr1	22272040	22272041	chr1:22272041:G:A	rs6681709	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr1	22404775	22404776	chr1:22404776:G:A	rs7543680	G	A	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr1	22614824	22614825	chr1:22614825:T:C	rs158766	T	C	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	22952199	22952200	chr1:22952200:C:G	rs668745	C	G	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr1	23171358	23171359	chr1:23171359:G:A	rs533778	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr1	23171403	23171404	chr1:23171404:G:A	rs142586645	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	23290906	23290907	chr1:23290907:C:G	rs628290	C	G	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr1	23351534	23351535	chr1:23351535:T:G	rs72659795	T	G	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	23533540	23533541	chr1:23533541:C:T	rs763586	C	T	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr1	23565859	23565860	chr1:23565860:A:C	rs2811939	A	C	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr1	23644784	23644785	chr1:23644785:G:A	rs115882436	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr1	23727183	23727184	chr1:23727184:A:T	rs573361	A	T	A	Sox3.mouse_HMG_2	5	1	+	2.9994078492021363	-3.9086673785909203	GAACAATGTTGATGATA
chr1	23757158	23757159	chr1:23757159:T:C	rs2076346	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr1	23872799	23872800	chr1:23872800:T:C	rs2502995	T	C	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr1	23984557	23984558	chr1:23984558:T:C	rs4649148	T	C	T	Sox3.mouse_HMG_2	11	1	+	9.536378833684745	2.85200463422441	CATTAATTTTATTGGTA
chr1	24023630	24023631	chr1:24023631:C:T	rs77772243	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	24187660	24187661	chr1:24187661:G:A	rs141858161	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr1	24201902	24201903	chr1:24201903:A:G	rs6667221	A	G	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	24201919	24201920	chr1:24201920:C:T	chr1:24201920:C:T	C	T	C	Sox3.mouse_HMG_2	1	1	-	2.156379914571453	4.16276785659091	TGCCACTTTTATTGATG
chr1	24275082	24275083	chr1:24275083:A:C	rs10430148	A	C	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr1	24428947	24428948	chr1:24428948:G:A	rs10903087	G	A	G	Sox3.mouse_HMG_2	13	1	+	4.877902266658595	-1.1737362375277163	CTTCCATGGTAGTGAGT
chr1	24610877	24610878	chr1:24610878:T:C	chr1:24610878:T:C	T	C	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr1	24906134	24906135	chr1:24906135:G:A	rs116547122	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr1	25006924	25006925	chr1:25006925:G:C	rs12058996	G	C	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr1	25006937	25006938	chr1:25006938:T:C	rs11249236	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.465291759276581	-1.219082440183754	CATTCATTTCATTGATG
chr1	25425790	25425791	chr1:25425791:G:A	rs72660931	G	A	g	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	25425796	25425797	chr1:25425797:A:C	rs72660932	A	C	a	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr1	25553424	25553425	chr1:25553425:G:A	rs74693812	G	A	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr1	25649042	25649043	chr1:25649043:C:G	rs774167258	C	G	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	26056677	26056678	chr1:26056678:C:T	rs12096733	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr1	26365558	26365559	chr1:26365559:A:G	rs4354529	A	G	a	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr1	26619220	26619221	chr1:26619221:T:C	rs4970480	T	C	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	26749815	26749816	chr1:26749816:G:A	rs551793788	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr1	27402947	27402948	chr1:27402948:C:T	rs113253735	C	T	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr1	27518780	27518781	chr1:27518781:C:T	rs867739186	C	T	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr1	27752688	27752689	chr1:27752689:T:G	chr1:27752689:T:G	T	G	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr1	28091391	28091392	chr1:28091392:G:A	rs76890118	G	A	g	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr1	28091438	28091439	chr1:28091439:A:G	rs115953889	A	G	a	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	28235782	28235783	chr1:28235783:C:G	rs75864559	C	G	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr1	28236164	28236165	chr1:28236165:A:G	rs12154	A	G	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr1	28737520	28737521	chr1:28737521:T:C	chr1:28737521:T:C	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	28737523	28737524	chr1:28737524:C:T	rs61787567	C	T	C	Sox3.mouse_HMG_2	15	1	-	2.913085387301815	3.346822838563156	CAGGAATGGTAGTGAGG
chr1	28814145	28814146	chr1:28814146:A:G	rs111835690	A	G	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	28814642	28814643	chr1:28814643:G:A	rs533123	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr1	29181737	29181738	chr1:29181738:G:A	rs200383319	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	29298862	29298863	chr1:29298863:G:A	rs9426315	G	A	A	Sox3.mouse_HMG_2	8	1	+	2.8259838552107346	1.6071934704662385	GAACAATGGTAGTGCCC
chr1	29782699	29782700	chr1:29782700:T:C	rs16832903	T	C	.	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	29810599	29810600	chr1:29810600:G:A	rs10914481	G	A	g	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	29810610	29810611	chr1:29810611:C:T	rs10914482	C	T	c	Sox3.mouse_HMG_2	1	1	+	1.1730039905324194	1.1932219678230649	TCTCCATGTTAGGGATG
chr1	30015164	30015165	chr1:30015165:A:G	rs428294	A	G	G	Sox3.mouse_HMG_2	2	1	+	2.035921693850202	0.16370380295384662	GAACACTGGCATTGGAG
chr1	30171241	30171242	chr1:30171242:C:T	rs6693191	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	30243907	30243908	chr1:30243908:C:T	rs1998011	C	T	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr1	30250853	30250854	chr1:30250854:C:T	rs12401669	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr1	30255520	30255521	chr1:30255521:T:G	rs6425919	T	G	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr1	30289839	30289840	chr1:30289840:G:C	rs107551	G	C	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	30412362	30412363	chr1:30412363:C:T	rs650676	C	T	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr1	30599636	30599637	chr1:30599637:C:T	rs1408150	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	30663233	30663234	chr1:30663234:G:C	rs12565024	G	C	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	30695919	30695920	chr1:30695920:C:T	rs12119696	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	30755798	30755799	chr1:30755799:G:A	rs56126824	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr1	31203359	31203360	chr1:31203360:C:T	rs61778328	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr1	31532563	31532564	chr1:31532564:G:A	rs114625793	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	31578204	31578205	chr1:31578205:G:A	rs114434987	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	31930401	31930402	chr1:31930402:C:T	rs12739816	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr1	32015055	32015056	chr1:32015056:G:A	rs640991	G	A	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr1	32780575	32780576	chr1:32780576:T:A	rs2282294	T	A	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr1	33007322	33007323	chr1:33007323:T:C	rs1534892	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.285795642972091	-4.1034857914058	CATCCATGGCAGTGTGA
chr1	33007340	33007341	chr1:33007341:A:G	rs1534893	A	G	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr1	33828223	33828224	chr1:33828224:C:T	rs1570090	C	T	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr1	33955742	33955743	chr1:33955743:A:G	rs139799070	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	33955771	33955772	chr1:33955772:T:C	rs578313	T	C	C	Sox3.mouse_HMG_2	12	1	+	4.068906486357411	-1.9820606515734047	CATCATTTCTATTGGGT
chr1	34190701	34190702	chr1:34190702:G:A	rs899380	G	A	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr1	34519857	34519858	chr1:34519858:A:G	rs3845485	A	G	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	34572104	34572105	chr1:34572105:C:T	rs10914976	C	T	-	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	34608019	34608020	chr1:34608020:C:T	rs12024207	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr1	34657613	34657614	chr1:34657614:A:T	rs7538290	A	T	T	Sox3.mouse_HMG_2	5	1	+	2.623242968202668	-4.284832259590388	CATCAACTGCAGTTATT
chr1	34692105	34692106	chr1:34692106:T:C	rs76893325	T	C	T	Sox3.mouse_HMG_2	6	1	+	10.230586127322065	3.841304692944175	GAACAATGGCAGTGGTT
chr1	34842989	34842990	chr1:34842990:A:G	rs11577735	A	G	A	Sox3.mouse_HMG_2	5	1	-	5.293117717608345	5.293117717608345	TCTCATTGTCATTGGTT
chr1	35182890	35182891	chr1:35182891:G:A	rs41267245	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr1	35215625	35215626	chr1:35215626:C:T	rs12091697	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	36135171	36135172	chr1:36135172:A:C	rs11577123	A	C	A	Sox3.mouse_HMG_2	6	1	-	5.444863231452249	-1.4632119963408066	CACCCATGTCATTGATT
chr1	36168462	36168463	chr1:36168463:A:C	rs74066060	A	C	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr1	36671597	36671598	chr1:36671598:C:T	rs219012	C	T	T	Sox3.mouse_HMG_2	8	1	+	3.020077800473817	4.274499766629487	ACTCAATTCCTTTGAAT
chr1	36698095	36698096	chr1:36698096:G:C	rs117912032	G	C	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr1	36916063	36916064	chr1:36916064:G:A	rs112783139	G	A	G	Sox3.mouse_HMG_2	15	1	-	4.684462598552828	8.464262016058624	CCTGAATTTCATTGACG
chr1	37197674	37197675	chr1:37197675:C:T	rs34544045	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr1	37440839	37440840	chr1:37440840:G:A	rs11264050	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr1	38172785	38172786	chr1:38172786:T:C	rs149180994	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	38221387	38221388	chr1:38221388:T:C	rs6685558	T	C	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr1	38291564	38291565	chr1:38291565:G:A	rs2637869	G	A	A	Sox3.mouse_HMG_2	1	1	+	5.276768022452166	7.283155964471622	CGTTAATGTTCTTGATG
chr1	38291598	38291599	chr1:38291599:G:T	rs2773164	G	T	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr1	38861583	38861584	chr1:38861584:T:C	rs61780037	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr1	38874609	38874610	chr1:38874610:C:T	rs880303	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	38892199	38892200	chr1:38892200:A:T	rs3790443	A	T	A	Sox3.mouse_HMG_2	16	1	-	2.6592211731316016	2.0839250570124053	GATTAATGATAGAGAGT
chr1	39052333	39052334	chr1:39052334:G:A	rs10465799	G	A	a	Sox3.mouse_HMG_2	15	1	-	3.790232690655775	7.570032108161571	AATCTATTGTATTGACC
chr1	39155284	39155285	chr1:39155285:A:C	rs11205695	A	C	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr1	39179022	39179023	chr1:39179023:C:T	rs191831306	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr1	39544562	39544563	chr1:39544563:T:C	rs61779359	T	C	T	Sox3.mouse_HMG_2	11	1	+	1.801764431629153	-4.882609767831181	CTTCTGTGCTATTGATG
chr1	39785924	39785925	chr1:39785925:C:A	rs969289042	C	A	c	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	40015650	40015651	chr1:40015651:T:C	rs36054808	T	C	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr1	40257002	40257003	chr1:40257003:C:G	rs7548758	C	G	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr1	40662424	40662425	chr1:40662425:C:G	chr1:40662425:C:G	C	G	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr1	40876039	40876040	chr1:40876040:G:A	rs140672716	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr1	40939991	40939992	chr1:40939992:G:T	rs6695161	G	T	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr1	41307331	41307332	chr1:41307332:T:C	rs11209839	T	C	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr1	41388544	41388545	chr1:41388545:C:T	rs2886109	C	T	C	Sox3.mouse_HMG_2	7	1	-	2.719476161572247	-3.90934533351581	ACTCAACGGTATTGACC
chr1	41914134	41914135	chr1:41914135:T:A	rs72965235	T	A	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr1	42153705	42153706	chr1:42153706:G:A	rs2297566	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	42847751	42847752	chr1:42847752:T:G	rs145597271	T	G	.	Sox3.mouse_HMG_2	5	1	-	1.7034861839222302	-5.204589043870829	CTTCAAAGTCAGTGCTT
chr1	42978996	42978997	chr1:42978997:G:A	rs74386636	G	A	G	Sox3.mouse_HMG_2	0	1	+	1.7592705140753606	0.06277822037269826	GCTCATTGCCATTCATT
chr1	43058035	43058036	chr1:43058036:G:T	rs841405	G	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	43271270	43271271	chr1:43271271:C:T	rs79825075	C	T	c	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr1	43272668	43272669	chr1:43272669:A:C	rs10890247	A	C	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr1	44050289	44050290	chr1:44050290:G:A	rs72683990	G	A	g	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr1	44093728	44093729	chr1:44093729:A:G	rs2025615	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.526913494861585	-3.862367939516305	GTTCAACGTCAGTGCTT
chr1	44653319	44653320	chr1:44653320:A:G	rs71653921	A	G	A	Sox3.mouse_HMG_2	5	1	+	7.09393656583902	0.7046551314611291	GATCAATGATACTGAAC
chr1	44676403	44676404	chr1:44676404:A:T	rs72671982	A	T	A	Sox3.mouse_HMG_2	9	1	-	3.1606551656599553	-2.8233260942243636	CAACAAATCTATTGGTG
chr1	44719588	44719589	chr1:44719589:A:G	rs12746898	A	G	A	Sox3.mouse_HMG_2	1	1	+	3.9899032011441706	1.983515259124713	CATCAATGATAGTTTTC
chr1	44847132	44847133	chr1:44847133:A:G	rs12568071	A	G	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	45499539	45499540	chr1:45499540:G:A	rs201193008	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr1	45537454	45537455	chr1:45537455:T:A	rs2934861	T	A	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr1	46013120	46013121	chr1:46013121:A:G	rs11810993	A	G	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr1	46481495	46481496	chr1:46481496:G:A	rs6679041	G	A	G	Sox3.mouse_HMG_2	1	1	+	3.7813536247165773	5.7877415667360355	TGCCAATGACAGTGAAG
chr1	46530831	46530832	chr1:46530832:A:G	rs141854375	A	G	A	Sox3.mouse_HMG_2	15	1	-	1.7147780552852527	-2.065021362220543	GATCAATGGTGTGGGTA
chr1	46534282	46534283	chr1:46534283:T:C	rs61783087	T	C	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr1	46690048	46690049	chr1:46690049:T:C	rs3766221	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr1	46690060	46690061	chr1:46690061:A:G	rs3766220	A	G	A	Sox3.mouse_HMG_2	4	1	+	3.3277616073657112	-3.0615198270121775	GGACAGTGTCATTGTTT
chr1	46715077	46715078	chr1:46715078:G:C	rs12078635	G	C	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr1	46817832	46817833	chr1:46817833:G:T	rs4646495	G	T	t	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr1	47105191	47105192	chr1:47105192:G:A	rs35722586	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	47228308	47228309	chr1:47228309:C:G	rs7534271	C	G	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	47484459	47484460	chr1:47484460:A:G	rs10789510	A	G	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr1	47515850	47515851	chr1:47515851:T:C	rs11585530	T	C	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	47631991	47631992	chr1:47631992:A:T	rs2506993	A	T	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr1	47895423	47895424	chr1:47895424:G:T	rs1497097	G	T	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr1	47994234	47994235	chr1:47994235:C:T	rs3814006	C	T	C	Sox3.mouse_HMG_2	1	1	+	1.3442105019064348	1.3644284791970784	CCGCGATGGCATTGAAT
chr1	48070416	48070417	chr1:48070417:G:A	rs528141240	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	48196541	48196542	chr1:48196542:C:T	rs823845	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr1	48208018	48208019	chr1:48208019:A:G	rs535295	A	G	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr1	48402446	48402447	chr1:48402447:A:G	rs112644553	A	G	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr1	48806570	48806571	chr1:48806571:A:C	rs17104909	A	C	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr1	48916834	48916835	chr1:48916835:G:A	rs10430111	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr1	49306779	49306780	chr1:49306780:A:T	rs241473	A	T	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr1	50175983	50175984	chr1:50175984:G:A	rs78331461	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr1	51261266	51261267	chr1:51261267:T:G	rs34653975	T	G	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	51512692	51512693	chr1:51512693:A:G	rs74082612	A	G	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr1	51534658	51534659	chr1:51534659:C:T	rs56280508	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr1	51902646	51902647	chr1:51902647:T:C	rs6698358	T	C	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr1	52002752	52002753	chr1:52002753:G:C	rs72905964	G	C	G	Sox3.mouse_HMG_2	1	1	+	7.5925318383184806	6.883478243993997	AGTCAGTGATATTGATT
chr1	52112069	52112070	chr1:52112070:T:G	rs72909945	T	G	t	Sox3.mouse_HMG_2	2	1	-	5.727679087295465	2.642438556553258	AAACAATTACAGTGACT
chr1	52751869	52751870	chr1:52751870:C:A	rs12081018	C	A	c	Sox3.mouse_HMG_2	3	1	+	2.0990393675224897	-4.801630871736414	TCTCAATATTTTTGATA
chr1	52921979	52921980	chr1:52921980:G:A	rs181961067	G	A	g	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr1	53025829	53025830	chr1:53025830:T:C	rs17107638	T	C	t	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr1	53081698	53081699	chr1:53081699:A:G	rs17107877	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr1	53089792	53089793	chr1:53089793:C:T	rs202187580	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr1	53110919	53110920	chr1:53110920:T:C	rs1288371	T	C	C	Sox3.mouse_HMG_2	10	1	-	5.098001294263377	-1.8107534850518427	CATCAGTGGCATTGGGG
chr1	53216026	53216027	chr1:53216027:T:G	rs1134688	T	G	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr1	53348288	53348289	chr1:53348289:T:C	rs10888781	T	C	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr1	53348300	53348301	chr1:53348301:A:G	rs10888782	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	53349864	53349865	chr1:53349865:G:A	rs4926976	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr1	53349892	53349893	chr1:53349893:G:T	rs4926977	G	T	t	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr1	53547788	53547789	chr1:53547789:G:C	rs2316193	G	C	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	53547791	53547792	chr1:53547792:C:T	rs2316194	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr1	53558816	53558817	chr1:53558817:C:T	rs568626	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr1	53562757	53562758	chr1:53562758:G:C	rs494082	G	C	G	Sox3.mouse_HMG_2	1	1	+	1.4703475131179233	0.7612939187934412	TGTCAATGGAGGTGATG
chr1	54437056	54437057	chr1:54437057:C:T	rs937764699	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	54714357	54714358	chr1:54714358:A:G	rs12057983	A	G	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	54819080	54819081	chr1:54819081:C:A	rs36082067	C	A	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr1	54850267	54850268	chr1:54850268:G:T	rs11555500	G	T	G	Sox3.mouse_HMG_2	8	1	+	2.528926557595847	3.3425644906000596	AAACAATGGCACTGTTT
chr1	54880032	54880033	chr1:54880033:C:A	rs12042996	C	A	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	54926794	54926795	chr1:54926795:T:C	rs67281988	T	C	C	Sox3.mouse_HMG_2	2	1	-	6.165692107133592	4.293474216237237	CTACAATGGCAGTGTTG
chr1	55189143	55189144	chr1:55189144:T:C	rs75595726	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.610174640686084	-1.0741995587742517	TAACAATTCCATTCATA
chr1	55211370	55211371	chr1:55211371:T:C	rs1874773	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr1	55290023	55290024	chr1:55290024:C:T	rs67570193	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr1	55322071	55322072	chr1:55322072:A:G	rs932158411	A	G	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr1	55322084	55322085	chr1:55322085:G:A	rs10489489	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr1	55334096	55334097	chr1:55334097:C:T	rs207164	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr1	55623309	55623310	chr1:55623310:A:G	rs11206643	A	G	A	Sox3.mouse_HMG_2	2	1	-	3.6285425351618543	-2.738354771363888	CATGAATGTTATTAGTG
chr1	55623759	55623760	chr1:55623760:T:C	rs115220141	T	C	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr1	55623809	55623810	chr1:55623810:T:C	rs61776377	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr1	55658283	55658284	chr1:55658284:G:A	rs148303977	G	A	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	55695230	55695231	chr1:55695231:G:C	rs12566150	G	C	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr1	55801359	55801360	chr1:55801360:A:G	rs58996925	A	G	G	Sox3.mouse_HMG_2	6	1	-	3.3400688668019995	-3.0492125675758923	GATCAATTTTTGGGATA
chr1	55813978	55813979	chr1:55813979:T:C	rs11583637	T	C	T	Sox3.mouse_HMG_2	2	1	+	2.750588967462111	-3.6163083390636337	TATAAGTGGCAGTGATT
chr1	55814012	55814013	chr1:55814013:G:A	rs12564526	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr1	55931688	55931689	chr1:55931689:A:T	rs4468206	A	T	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	55931948	55931949	chr1:55931949:G:T	rs77913876	G	T	g	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr1	56024401	56024402	chr1:56024402:A:C	rs7355032	A	C	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr1	56137841	56137842	chr1:56137842:T:A	rs77759064	T	A	T	Sox3.mouse_HMG_2	2	1	+	6.619276714620286	3.337619938836749	ACTCAATGCTAGAGATT
chr1	56345894	56345895	chr1:56345895:T:C	rs7529732	T	C	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr1	56345905	56345906	chr1:56345906:T:C	rs7529741	T	C	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	56410887	56410888	chr1:56410888:G:A	rs4489603	G	A	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr1	56502804	56502805	chr1:56502805:C:T	rs4912314	C	T	T	Sox3.mouse_HMG_2	0	1	-	1.2160901653112668	-0.48040212839139645	GATCCATGCCCTTGAGT
chr1	56509044	56509045	chr1:56509045:A:G	rs114923744	A	G	a	Sox3.mouse_HMG_2	11	1	-	3.4665355833420834	-3.217838616118251	GATTCATTTCATTGAAG
chr1	56527518	56527519	chr1:56527519:T:C	rs57966457	T	C	T	Sox3.mouse_HMG_2	14	1	+	5.044287246727089	3.031140152887089	TATCATTTCTATTGTTA
chr1	56529265	56529266	chr1:56529266:C:G	rs993075	C	G	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr1	56646958	56646959	chr1:56646959:A:T	rs4451572	A	T	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr1	56678312	56678313	chr1:56678313:A:G	rs2796498	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr1	56799844	56799845	chr1:56799845:T:C	rs1935556	T	C	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr1	57307416	57307417	chr1:57307417:C:G	rs17115580	C	G	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr1	57367624	57367625	chr1:57367625:C:T	rs77406820	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr1	57370815	57370816	chr1:57370816:T:C	rs7540817	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	57420711	57420712	chr1:57420712:T:C	rs4912248	T	C	C	Sox3.mouse_HMG_2	14	1	-	3.738344012131125	0.4202777423595235	GAGCAATTTTATGGAGA
chr1	57451088	57451089	chr1:57451089:A:C	rs17115795	A	C	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	57711330	57711331	chr1:57711331:C:T	rs1323815	C	T	T	Sox3.mouse_HMG_2	8	1	-	3.6828809673295595	2.4640905825850625	AAATAATGGCAGTGAGA
chr1	57719444	57719445	chr1:57719445:G:A	rs68107934	G	A	A	Sox3.mouse_HMG_2	5	1	+	4.255955496423827	10.645236930801717	CCTCAGTGATATTGTTT
chr1	58005418	58005419	chr1:58005419:T:C	rs1325449	T	C	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	58276797	58276798	chr1:58276798:T:C	rs496009	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	58436815	58436816	chr1:58436816:T:C	rs706428	T	C	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	58446765	58446766	chr1:58446766:G:A	rs822169	G	A	A	Sox3.mouse_HMG_2	11	1	+	2.419192355804776	-2.152291772528509	GTTCCATGTCAGTGGAT
chr1	58574008	58574009	chr1:58574009:T:C	rs78279871	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr1	58855479	58855480	chr1:58855480:C:A	rs116728140	C	A	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr1	58863982	58863983	chr1:58863983:G:C	rs3015327	G	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr1	58864020	58864021	chr1:58864021:C:T	rs61788416	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr1	58883897	58883898	chr1:58883898:C:T	rs12239208	C	T	C	Sox3.mouse_HMG_2	13	1	-	3.6379961333318422	-2.413642370854469	GAACAAAGGCATTGTTG
chr1	58891153	58891154	chr1:58891154:T:C	rs6661505	T	C	C	Sox3.mouse_HMG_2	9	1	+	2.0107750289586113	1.3181224860866514	CACCAATGGTCTTGAGA
chr1	58957938	58957939	chr1:58957939:G:T	rs11207352	G	T	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr1	59016341	59016342	chr1:59016342:C:A	rs17464436	C	A	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr1	59089496	59089497	chr1:59089497:A:G	rs12404965	A	G	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr1	59180453	59180454	chr1:59180454:T:C	rs6681830	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.880702186986681	-1.5085792473912103	GATCAATGGTATTTCTC
chr1	59181378	59181379	chr1:59181379:C:T	rs78147819	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr1	59318088	59318089	chr1:59318089:C:T	rs11576519	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	59491246	59491247	chr1:59491247:A:G	rs834672	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr1	59689817	59689818	chr1:59689818:G:A	rs72666283	G	A	G	Sox3.mouse_HMG_2	2	1	+	8.861679062073465	10.73389695296982	AAGCAATGTCATTGAGA
chr1	59689847	59689848	chr1:59689848:A:G	rs11580721	A	G	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	59879979	59879980	chr1:59879980:C:T	rs12404961	C	T	C	Sox3.mouse_HMG_2	14	1	-	4.235993166686166	7.5540594364577665	CATCAATTACAGTAGTA
chr1	59917492	59917493	chr1:59917493:G:A	rs916735400	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	60874953	60874954	chr1:60874954:G:C	rs656459	G	C	C	Sox3.mouse_HMG_2	11	1	+	2.726563225502816	-2.5772887965436944	GTACTATGACAGTGATT
chr1	60891546	60891547	chr1:60891547:G:A	rs143426440	G	A	G	Sox3.mouse_HMG_2	16	1	-	2.9304218085796547	4.533414858240105	ACTCAATTTTCTTGAGC
chr1	61247245	61247246	chr1:61247246:T:C	rs333166	T	C	T	Sox3.mouse_HMG_2	11	1	+	8.12415683726295	1.4397826378026128	CCTGAATGCCATTGATA
chr1	61741581	61741582	chr1:61741582:A:G	rs7551399	A	G	G	Sox3.mouse_HMG_2	1	1	+	3.266823475593341	1.260435533573884	AATCAATCACAGTGTTT
chr1	61781716	61781717	chr1:61781717:T:A	rs11207831	T	A	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr1	61904525	61904526	chr1:61904526:C:T	rs68030937	C	T	C	Sox3.mouse_HMG_2	11	1	-	2.301317695060913	-2.270166433272372	TCTCAATTGTGGTGGTG
chr1	62070946	62070947	chr1:62070947:C:G	rs6668421	C	G	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr1	62405411	62405412	chr1:62405412:G:A	rs12747317	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr1	62405418	62405419	chr1:62405419:C:T	rs182989045	C	T	C	Sox3.mouse_HMG_2	16	1	-	1.220551146463358	1.0089767199781072	AGGCGATGGCAGTGATG
chr1	62405428	62405429	chr1:62405429:A:G	rs10889329	A	G	A	Sox3.mouse_HMG_2	6	1	-	1.220551146463358	-5.168730287914532	AGGCGATGGCAGTGATG
chr1	63453321	63453322	chr1:63453322:T:A	rs9436674	T	A	T	Sox3.mouse_HMG_2	12	1	+	1.843737846127023	-4.207229291803794	GCTAAATGGCATTCATG
chr1	63590739	63590740	chr1:63590740:C:A	rs11208250	C	A	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr1	63628939	63628940	chr1:63628940:A:T	rs10489613	A	T	A	Sox3.mouse_HMG_2	11	1	-	2.511770761929909	-3.4402355438172005	TATCAAGATTATTGAAA
chr1	63843593	63843594	chr1:63843594:A:C	rs602934	A	C	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	64063544	64063545	chr1:64063545:T:C	rs56027505	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr1	64196740	64196741	chr1:64196741:A:G	rs12731793	A	G	A	Sox3.mouse_HMG_2	6	1	-	6.962200272044584	0.5729188376666944	AAACAATGTTAGTGCTG
chr1	64267049	64267050	chr1:64267050:G:A	rs17126258	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	64397957	64397958	chr1:64397958:T:C	rs75259955	T	C	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	64496097	64496098	chr1:64496098:A:G	rs305562	A	G	G	Sox3.mouse_HMG_2	4	1	+	1.899841644379907	-4.489439789997981	CATGAGTGGTAGTGAAA
chr1	64598261	64598262	chr1:64598262:G:A	rs151135115	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr1	64809285	64809286	chr1:64809286:T:A	rs78913020	T	A	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr1	64911476	64911477	chr1:64911477:G:A	rs61784740	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr1	65395871	65395872	chr1:65395872:A:C	rs10218548	A	C	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr1	65490556	65490557	chr1:65490557:G:A	rs141548749	G	A	T	Sox3.mouse_HMG_2	0	1	+	4.440066358684751	2.7435740649820883	GTTCAATCCTAGTGGTT
chr1	65633754	65633755	chr1:65633755:C:G	rs3206172	C	G	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr1	65818052	65818053	chr1:65818053:C:T	rs4259616	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr1	65965333	65965334	chr1:65965334:T:A	rs12562632	T	A	T	Sox3.mouse_HMG_2	10	1	-	1.8755616628470952	-5.033193116468124	CACCAATTTCACTGAAG
chr1	66155843	66155844	chr1:66155844:A:G	rs582237	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr1	66181060	66181061	chr1:66181061:C:T	rs147257739	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr1	66181096	66181097	chr1:66181097:C:A	rs782329	C	A	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr1	66259061	66259062	chr1:66259062:G:A	rs6668312	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	66270170	66270171	chr1:66270171:G:T	rs6688020	G	T	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr1	66311270	66311271	chr1:66311271:G:A	rs6690590	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr1	66371597	66371598	chr1:66371598:C:T	rs150971744	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	66449441	66449442	chr1:66449442:G:A	rs783435	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr1	66477006	66477007	chr1:66477007:A:G	rs699248	A	G	A	Sox3.mouse_HMG_2	11	1	-	6.606191977435129	-0.07818222202520558	ATTAAATTTCATTGATT
chr1	66510709	66510710	chr1:66510710:C:T	rs12091785	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr1	66510710	66510711	chr1:66510711:G:A	rs11208890	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr1	66634625	66634626	chr1:66634626:T:C	rs6696812	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	66669416	66669417	chr1:66669417:G:A	rs7536634	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr1	67001489	67001490	chr1:67001490:C:G	rs76609130	C	G	C	Sox3.mouse_HMG_2	13	1	-	6.344971568976539	-0.04228846995067355	GTTCAATGTAAGTGAGA
chr1	67282078	67282079	chr1:67282079:A:G	rs11209035	A	G	G	Sox3.mouse_HMG_2	15	1	-	4.970869832935795	1.1910704154300005	TTACAATGCCATTGCTT
chr1	67462017	67462018	chr1:67462018:G:A	rs12136231	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr1	67462026	67462027	chr1:67462027:A:G	rs10458560	A	G	A	Sox3.mouse_HMG_2	15	1	-	2.458586170314786	-1.3212132471910094	TGACAATGGGATTGTTG
chr1	67597706	67597707	chr1:67597707:G:C	rs55747525	G	C	G	Sox3.mouse_HMG_2	13	1	+	11.674160753763124	5.28690071483591	AATTAATTTTATTGATG
chr1	67690693	67690694	chr1:67690694:C:A	rs76477672	C	A	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr1	67886318	67886319	chr1:67886319:A:G	rs8179318	A	G	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	68120024	68120025	chr1:68120025:G:T	rs12217115	G	T	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr1	68155078	68155079	chr1:68155079:G:A	rs3762371	G	A	G	Sox3.mouse_HMG_2	0	1	+	5.699090295268279	4.002598001565615	GATCAATTACATTCACT
chr1	68501775	68501776	chr1:68501776:C:G	rs11587365	C	G	C	Sox3.mouse_HMG_2	15	1	-	5.289198794971165	4.246526522185396	TTTCAATTTCATTTAGT
chr1	69166897	69166898	chr1:69166898:T:C	rs12567267	T	C	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	69321800	69321801	chr1:69321801:C:T	rs2815468	C	T	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr1	70220005	70220006	chr1:70220006:G:A	rs647872	G	A	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr1	70297650	70297651	chr1:70297651:C:G	rs138692440	C	G	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	70449239	70449240	chr1:70449240:G:C	rs11590089	G	C	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr1	71719532	71719533	chr1:71719533:G:T	rs11209830	G	T	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr1	72062974	72062975	chr1:72062975:A:T	rs1486081	A	T	A	Sox3.mouse_HMG_2	6	1	-	3.0389179167078675	-3.869157311085187	TTTTAGTGCCATTGATT
chr1	72284917	72284918	chr1:72284918:A:C	rs12090068	A	C	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	72616787	72616788	chr1:72616788:T:C	rs12408420	T	C	T	Sox3.mouse_HMG_2	1	1	+	4.552710993043501	4.532493015752857	TTGCAATTGCATTGGTA
chr1	73460888	73460889	chr1:73460889:T:C	rs496819	T	C	T	Sox3.mouse_HMG_2	10	1	-	3.492376340735474	-3.416378438579745	CATAAATTGCATTTATT
chr1	73567656	73567657	chr1:73567657:A:C	rs7542499	A	C	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr1	73759011	73759012	chr1:73759012:G:A	chr1:73759012:G:A	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr1	73860694	73860695	chr1:73860695:G:A	rs17578595	G	A	A	Sox3.mouse_HMG_2	7	1	+	1.979438021332785	-4.649383473755271	GATCTCTGCTATTGAAG
chr1	73860701	73860702	chr1:73860702:A:G	rs182086504	A	G	A	Sox3.mouse_HMG_2	14	1	+	1.979438021332785	-1.3386282484388168	GATCTCTGCTATTGAAG
chr1	73887410	73887411	chr1:73887411:T:C	rs12091914	T	C	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr1	73910618	73910619	chr1:73910619:A:G	chr1:73910619:A:G	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr1	74334400	74334401	chr1:74334401:G:T	rs17095150	G	T	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr1	74422636	74422637	chr1:74422637:A:C	rs1016617921	A	C	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr1	74510049	74510050	chr1:74510050:G:A	rs11210467	G	A	A	Sox3.mouse_HMG_2	13	1	+	2.8041358550724964	-3.247502649113815	TTTCAATGTCACAGATT
chr1	74748508	74748509	chr1:74748509:G:T	rs2345438	G	T	G	Sox3.mouse_HMG_2	13	1	+	1.7236131678473434	-4.663646871079868	TGTCACTGTTTGTGATT
chr1	75137944	75137945	chr1:75137945:T:C	rs12036667	T	C	T	Sox3.mouse_HMG_2	9	1	+	2.5473336107818647	1.8546810679099057	ACTCAATGCTGTTGTTA
chr1	75137948	75137949	chr1:75137949:G:T	rs7535534	G	T	G	Sox3.mouse_HMG_2	13	1	+	2.5473336107818647	-3.8399264281453473	ACTCAATGCTGTTGTTA
chr1	75248868	75248869	chr1:75248869:T:C	rs649352	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr1	75264322	75264323	chr1:75264323:T:A	rs79331054	T	A	T	Sox3.mouse_HMG_2	1	1	-	4.720175324115065	2.0249517650617674	GATCAATGCCAATGGCT
chr1	75264329	75264330	chr1:75264330:G:A	rs79689913	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr1	75333732	75333733	chr1:75333733:G:A	rs1249660	G	A	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr1	75887608	75887609	chr1:75887609:T:C	rs12124417	T	C	t	Sox3.mouse_HMG_2	11	1	+	1.9824239407627762	-4.701950258697559	ACTCCATGTTATAGATG
chr1	76086789	76086790	chr1:76086790:A:G	rs1144346	A	G	G	Sox3.mouse_HMG_2	8	1	-	3.0422812722582204	1.7878593061025505	ACACCATGTCAGTGATT
chr1	76234302	76234303	chr1:76234303:C:G	rs960582936	C	G	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr1	76388635	76388636	chr1:76388636:T:G	rs10873883	T	G	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr1	76525481	76525482	chr1:76525482:T:C	rs315088	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr1	77343214	77343215	chr1:77343215:G:A	rs12125503	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	77525822	77525823	chr1:77525823:C:T	rs4949657	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr1	77650717	77650718	chr1:77650718:A:G	rs278837	A	G	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr1	78340250	78340251	chr1:78340251:C:T	rs111318827	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr1	78666354	78666355	chr1:78666355:G:T	rs72935648	G	T	G	Sox3.mouse_HMG_2	10	1	+	6.51374236637753	6.51374236637753	GATCAATTGTGTTGACA
chr1	78938065	78938066	chr1:78938066:T:G	rs985277	T	G	T	Sox3.mouse_HMG_2	2	1	+	11.106233613509279	5.952358946829388	GCTCAATTATATTGAGT
chr1	79777635	79777636	chr1:79777636:C:T	rs55658731	C	T	c	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	79777636	79777637	chr1:79777637:T:G	rs55800905	T	G	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr1	79900156	79900157	chr1:79900157:A:G	rs80266529	A	G	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr1	80047567	80047568	chr1:80047568:A:C	rs12733070	A	C	A	Sox3.mouse_HMG_2	10	1	+	7.185810709847613	0.2770559305323916	GCTCAATTTTATGGAAT
chr1	80279120	80279121	chr1:80279121:C:T	rs1776289	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr1	80375342	80375343	chr1:80375343:C:G	rs72933147	C	G	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	80375386	80375387	chr1:80375387:T:C	rs77683103	T	C	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	80498781	80498782	chr1:80498782:C:T	rs10493667	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr1	80498804	80498805	chr1:80498805:A:G	rs10493666	A	G	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr1	80536341	80536342	chr1:80536342:A:G	rs117214382	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.3203303285303294	-3.0689511058475603	GATTAATAATATTGAAA
chr1	80776377	80776378	chr1:80776378:A:T	rs6664492	A	T	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr1	80992517	80992518	chr1:80992518:G:A	rs11163180	G	A	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	81391167	81391168	chr1:81391168:T:C	rs7521051	T	C	T	Sox3.mouse_HMG_2	5	1	-	5.868334217170221	-0.5209472172076692	AATCAATTTTGGTGAGT
chr1	81408183	81408184	chr1:81408184:A:G	rs11808193	A	G	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	81547950	81547951	chr1:81547951:T:C	rs1039072173	T	C	T	Sox3.mouse_HMG_2	16	1	+	6.702457052508471	5.099464002848021	CATCAATGTTATTTTAT
chr1	81590333	81590334	chr1:81590334:C:T	rs115586152	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr1	81682384	81682385	chr1:81682385:G:A	rs11163349	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr1	81704467	81704468	chr1:81704468:G:A	chr1:81704468:G:A	G	A	G	Sox3.mouse_HMG_2	5	1	+	2.3834620202582526	8.772743454636142	GATTAGTGGTAGTGGTA
chr1	81719768	81719769	chr1:81719769:A:G	rs78748682	A	G	A	Sox3.mouse_HMG_2	10	1	+	1.8030867603785374	-5.105668018936683	GCCCAATGCTAGTGGAA
chr1	81731708	81731709	chr1:81731709:A:G	rs113011158	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr1	81745566	81745567	chr1:81745567:A:G	rs12043613	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr1	82063927	82063928	chr1:82063928:C:T	rs12562339	C	T	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr1	82109114	82109115	chr1:82109115:T:G	rs4970668	T	G	T	Sox3.mouse_HMG_2	2	1	+	5.938192804850114	0.7843181381702231	TTTGAATGGCATTGAGT
chr1	82306631	82306632	chr1:82306632:C:T	rs7413734	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	82307167	82307168	chr1:82307168:T:C	rs77509326	T	C	T	Sox3.mouse_HMG_2	6	1	+	6.3674407360048235	-0.021840698373065084	GATCAATGTGAGTGGAG
chr1	82464548	82464549	chr1:82464549:A:G	rs115981489	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	82868760	82868761	chr1:82868761:C:T	rs7550354	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	83025709	83025710	chr1:83025710:G:C	rs2274895	G	C	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr1	83087339	83087340	chr1:83087340:A:C	rs12740512	A	C	A	Sox3.mouse_HMG_2	5	1	-	3.2885385778289375	3.8073323712441045	TATCATTGGCATTGGAC
chr1	83658681	83658682	chr1:83658682:A:G	rs4379690	A	G	G	Sox3.mouse_HMG_2	6	1	-	2.4252653190380586	-3.9640161153398306	TTTAAATGGCAGTGTTT
chr1	83748171	83748172	chr1:83748172:G:A	rs12724410	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr1	83767151	83767152	chr1:83767152:C:T	rs4285721	C	T	C	Sox3.mouse_HMG_2	16	1	-	3.821075479288773	3.6095010528035227	GTATAATGTTAGTGGTG
chr1	83802944	83802945	chr1:83802945:G:A	rs7551130	G	A	G	Sox3.mouse_HMG_2	15	1	+	0.5622327358810529	0.9959701871423942	CATCAGTGCCAGTGCGG
chr1	83849598	83849599	chr1:83849599:T:C	rs188785817	T	C	T	Sox3.mouse_HMG_2	10	1	-	3.662084551758099	-3.2466702275571198	TTACACTTCTATTGATT
chr1	83962023	83962024	chr1:83962024:G:C	rs942848	G	C	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	83997444	83997445	chr1:83997445:G:A	rs558567	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr1	84165201	84165202	chr1:84165202:G:A	rs2642182	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	84171666	84171667	chr1:84171667:A:G	rs61360062	A	G	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr1	84225643	84225644	chr1:84225644:A:G	rs11163916	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr1	84433503	84433504	chr1:84433504:C:A	chr1:84433504:C:A	C	A	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr1	84520355	84520356	chr1:84520356:C:T	rs925740	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr1	84757792	84757793	chr1:84757793:G:A	rs12733380	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	84889288	84889289	chr1:84889289:G:A	rs12032140	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr1	84889307	84889308	chr1:84889308:T:C	rs12035778	T	C	C	Sox3.mouse_HMG_2	12	1	+	0.786358551712407	-5.264608586218409	GAGCAATGCCTTTGGTC
chr1	84890744	84890745	chr1:84890745:G:T	rs2389789	G	T	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	84890762	84890763	chr1:84890763:C:G	rs2389790	C	G	G	Sox3.mouse_HMG_2	3	1	+	5.304006591949939	-0.7465127179393551	TTTCAGTTATAGTGATT
chr1	85229970	85229971	chr1:85229971:T:C	rs2153528	T	C	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr1	85317417	85317418	chr1:85317418:T:C	rs233109	T	C	C	Sox3.mouse_HMG_2	5	1	+	4.821720860783509	4.821720860783509	CATCATTGCCAGTGACA
chr1	85372821	85372822	chr1:85372822:T:G	rs140056707	T	G	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	85484636	85484637	chr1:85484637:G:C	rs17127802	G	C	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	85707416	85707417	chr1:85707417:T:C	rs1775986	T	C	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	85707463	85707464	chr1:85707464:C:T	chr1:85707464:C:T	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr1	86035761	86035762	chr1:86035762:C:T	rs71506583	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr1	86380269	86380270	chr1:86380270:G:A	rs114030321	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr1	86547245	86547246	chr1:86547246:C:T	rs2231580	C	T	c	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr1	87045136	87045137	chr1:87045137:A:G	rs142472058	A	G	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	87121578	87121579	chr1:87121579:G:A	rs141425673	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr1	87219548	87219549	chr1:87219549:G:A	rs11804752	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	87817023	87817024	chr1:87817024:C:T	rs2436980	C	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr1	88001744	88001745	chr1:88001745:C:T	rs9787004	C	T	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr1	88276296	88276297	chr1:88276297:C:T	rs115590681	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	88502107	88502108	chr1:88502108:G:C	rs387972	G	C	c	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	88698337	88698338	chr1:88698338:C:T	chr1:88698338:C:T	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr1	88803160	88803161	chr1:88803161:C:T	rs149057939	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	88884340	88884341	chr1:88884341:G:C	rs56035308	G	C	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr1	89165912	89165913	chr1:89165913:C:T	rs590617	C	T	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr1	89304751	89304752	chr1:89304752:C:A	rs4658355	C	A	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr1	89451240	89451241	chr1:89451241:C:G	rs116753466	C	G	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr1	89524126	89524127	chr1:89524127:T:C	rs1051151384	T	C	T	Sox3.mouse_HMG_2	6	1	+	2.6369542715656396	-3.752327162812251	AGCCAATGGTATTGGAA
chr1	89524129	89524130	chr1:89524130:T:A	rs190484433	T	A	T	Sox3.mouse_HMG_2	9	1	+	2.6369542715656396	-3.34702698831868	AGCCAATGGTATTGGAA
chr1	89524151	89524152	chr1:89524152:T:G	chr1:89524152:T:G	T	G	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr1	89632083	89632084	chr1:89632084:G:C	rs138641398	G	C	G	Sox3.mouse_HMG_2	9	1	-	3.161529431089422	-2.129799285922937	TATCAATGCCAGCTATT
chr1	89755881	89755882	chr1:89755882:C:T	rs580251	C	T	C	Sox3.mouse_HMG_2	2	1	-	1.338439828719209	3.210657719615564	GAGCACTGCTAGTGGTG
chr1	89815306	89815307	chr1:89815307:C:T	rs189065878	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	91066605	91066606	chr1:91066606:T:C	rs76742661	T	C	T	Sox3.mouse_HMG_2	0	1	+	2.7030956665323846	3.1882306807864924	TCTGAATGGCAATGATT
chr1	91598653	91598654	chr1:91598654:A:G	rs12028000	A	G	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr1	91683538	91683539	chr1:91683539:C:T	rs1805116	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr1	91684278	91684279	chr1:91684279:C:A	rs913059	C	A	A	Sox3.mouse_HMG_2	3	1	+	3.857706989052483	-3.0429632502064248	TTTCAATTGTAGTTAAG
chr1	92013803	92013804	chr1:92013804:G:T	rs72954747	G	T	G	Sox3.mouse_HMG_2	7	1	+	3.3871267032919987	2.261235489446753	TAACAAAGATATTGGTT
chr1	92301734	92301735	chr1:92301735:A:T	rs6604089	A	T	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr1	92641850	92641851	chr1:92641851:C:T	rs12025792	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	92787446	92787447	chr1:92787447:C:T	rs1535372	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr1	92929820	92929821	chr1:92929821:C:T	rs11164838	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	93179624	93179625	chr1:93179625:C:T	rs1335679	C	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr1	93341159	93341160	chr1:93341160:T:C	rs954946726	T	C	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr1	93347872	93347873	chr1:93347873:T:C	rs771464	T	C	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr1	93848597	93848598	chr1:93848598:T:C	rs78969815	T	C	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr1	93848598	93848599	chr1:93848599:C:T	rs11165019	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	94099873	94099874	chr1:94099874:C:G	rs548122	C	G	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr1	94180789	94180790	chr1:94180790:T:C	rs17111205	T	C	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	94335875	94335876	chr1:94335876:C:T	rs550238711	C	T	C	Sox3.mouse_HMG_2	0	1	+	3.793677336475704	3.3085423222215953	CGTGAATTGTATTGTTC
chr1	94359106	94359107	chr1:94359107:C:T	rs12064428	C	T	C	Sox3.mouse_HMG_2	3	1	+	6.63323312084324	1.7763772456210178	GAACAGTGATAGTGATT
chr1	94359107	94359108	chr1:94359108:A:G	rs2786906	A	G	G	Sox3.mouse_HMG_2	4	1	+	6.63323312084324	0.24395168646535098	GAACAGTGATAGTGATT
chr1	94417295	94417296	chr1:94417296:A:G	rs150767789	A	G	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr1	94417777	94417778	chr1:94417778:A:G	rs1422956683	A	G	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr1	94536293	94536294	chr1:94536294:T:C	chr1:94536294:T:C	T	C	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	94560120	94560121	chr1:94560121:C:A	rs115036178	C	A	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr1	94597766	94597767	chr1:94597767:A:G	rs75745687	A	G	A	Sox3.mouse_HMG_2	10	1	+	2.9097795078067965	-3.998975271508424	GGTCAAAGGCATGGATT
chr1	94683281	94683282	chr1:94683282:G:A	rs12739283	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr1	94884485	94884486	chr1:94884486:A:C	rs117424936	A	C	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr1	94925004	94925005	chr1:94925005:T:A	rs57476802	T	A	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	94928795	94928796	chr1:94928796:T:A	rs1132	T	A	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	95019622	95019623	chr1:95019623:A:G	rs10874901	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	95316515	95316516	chr1:95316516:A:G	rs11165375	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	95375309	95375310	chr1:95375310:A:C	rs6680011	A	C	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr1	95532579	95532580	chr1:95532580:C:T	rs78388303	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr1	95553328	95553329	chr1:95553329:A:C	rs12093657	A	C	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr1	95889492	95889493	chr1:95889493:A:G	rs114845601	A	G	A	Sox3.mouse_HMG_2	12	1	-	3.891254152642259	-2.159712985288558	GCTCAATTTTAATGCTT
chr1	95912065	95912066	chr1:95912066:A:C	rs34830765	A	C	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr1	96004628	96004629	chr1:96004629:A:C	rs321252	A	C	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	96037013	96037014	chr1:96037014:C:G	rs161111	C	G	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr1	96890838	96890839	chr1:96890839:G:A	rs12026710	G	A	A	Sox3.mouse_HMG_2	10	1	+	2.20824230218799	9.11699708150321	GAAGAATGTCGTTGATA
chr1	97038641	97038642	chr1:97038642:T:C	rs12064287	T	C	T	Sox3.mouse_HMG_2	11	1	+	2.815856411522589	-3.8685177879377455	CATTAGTGATATTGGTT
chr1	97042568	97042569	chr1:97042569:C:T	rs563268732	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	97053414	97053415	chr1:97053415:C:T	rs77461788	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr1	97070502	97070503	chr1:97070503:T:C	rs535789218	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr1	97278248	97278249	chr1:97278249:A:T	rs641805	A	T	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr1	97368462	97368463	chr1:97368463:C:T	rs1879371	C	T	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	97693016	97693017	chr1:97693017:G:A	rs72977714	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr1	97845086	97845087	chr1:97845087:C:T	rs116072346	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	98392482	98392483	chr1:98392483:A:T	rs4950123	A	T	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr1	98950545	98950546	chr1:98950546:G:T	rs309083	G	T	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr1	99552144	99552145	chr1:99552145:A:G	rs6656134	A	G	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr1	99599042	99599043	chr1:99599043:A:G	rs6577389	A	G	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr1	99691260	99691261	chr1:99691261:T:C	rs7514151	T	C	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	99849629	99849630	chr1:99849630:G:C	rs79248441	G	C	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr1	99849632	99849633	chr1:99849633:T:A	rs144311571	T	A	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr1	100045298	100045299	chr1:100045299:T:G	rs834277	T	G	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr1	100045325	100045326	chr1:100045326:T:C	rs834278	T	C	C	Sox3.mouse_HMG_2	11	1	+	6.129775227175452	-0.5545989722848823	TAGCAGTGCTATTGATT
chr1	100133474	100133475	chr1:100133475:G:A	rs116377124	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr1	100133485	100133486	chr1:100133486:C:T	rs180896719	C	T	C	Sox3.mouse_HMG_2	8	1	+	2.3629955030730314	3.6174174692287004	TATGAGTTCTAGTGATG
chr1	100747778	100747779	chr1:100747779:A:T	rs10493936	A	T	A	Sox3.mouse_HMG_2	2	1	+	6.638618677521013	9.92027545330455	TCACAATGATAGTGAAA
chr1	100759063	100759064	chr1:100759064:C:T	rs12088882	C	T	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr1	100941962	100941963	chr1:100941963:A:G	rs11581062	A	G	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	101021907	101021908	chr1:101021908:C:T	rs1047859672	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr1	101107851	101107852	chr1:101107852:C:T	rs12727236	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	101191125	101191126	chr1:101191126:A:C	rs34693270	A	C	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr1	101399455	101399456	chr1:101399456:C:T	rs12041998	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr1	102085460	102085461	chr1:102085461:T:C	rs55825283	T	C	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	102156127	102156128	chr1:102156128:T:C	rs12131245	T	C	T	Sox3.mouse_HMG_2	6	1	+	2.91022412041658	-3.4790573139613077	GTTCAGTGGTTTTGATT
chr1	102627862	102627863	chr1:102627863:A:G	rs932175	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr1	103265791	103265792	chr1:103265792:C:T	rs79529509	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr1	103266382	103266383	chr1:103266383:T:G	rs35027169	T	G	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr1	103563012	103563013	chr1:103563013:A:G	rs17014913	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	104031074	104031075	chr1:104031075:G:A	rs12759387	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr1	104463896	104463897	chr1:104463897:G:A	rs1115851	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr1	104539371	104539372	chr1:104539372:T:C	rs17021664	T	C	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	104561058	104561059	chr1:104561059:A:G	rs1597177	A	G	a	Sox3.mouse_HMG_2	10	1	+	10.179180000408719	3.2704252210934985	CAACAATTCCATTGAAA
chr1	105088331	105088332	chr1:105088332:C:A	rs7416477	C	A	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr1	105655817	105655818	chr1:105655818:C:A	rs1361465	C	A	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr1	106413436	106413437	chr1:106413437:A:C	rs12067715	A	C	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr1	106498357	106498358	chr1:106498358:T:C	rs114910083	T	C	T	Sox3.mouse_HMG_2	16	1	-	3.7337041764812953	3.9452786029665456	GTTAAATGATATTGACA
chr1	106515646	106515647	chr1:106515647:C:G	rs2031503	C	G	G	Sox3.mouse_HMG_2	14	1	-	4.029941420395135	1.3154790725780912	TAACAATGGTTTTGGTA
chr1	106573948	106573949	chr1:106573949:T:C	rs10881421	T	C	C	Sox3.mouse_HMG_2	2	1	-	3.54062859583261	1.6684107049362549	CAACAATTGCATTAAAC
chr1	106705866	106705867	chr1:106705867:T:C	rs4244116	T	C	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr1	107141041	107141042	chr1:107141042:T:C	rs1175464459	T	C	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr1	107183120	107183121	chr1:107183121:C:A	rs4311917	C	A	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr1	107641224	107641225	chr1:107641225:T:C	rs17019580	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	108118293	108118294	chr1:108118294:T:G	rs661202	T	G	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr1	108646628	108646629	chr1:108646629:C:T	rs762766728	C	T	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	108709193	108709194	chr1:108709194:T:C	rs72980738	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr1	108813593	108813594	chr1:108813594:T:C	rs12140541	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.205853399455175	-3.183428034922715	TGTCAATTCTAATGACC
chr1	108813610	108813611	chr1:108813611:T:C	rs12140545	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr1	109106171	109106172	chr1:109106172:A:G	rs17641032	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.224281909529718	-2.4600922899306172	CTACAAATGTATTGATG
chr1	109197505	109197506	chr1:109197506:C:G	rs61756684	C	G	C	Sox3.mouse_HMG_2	9	1	+	1.3646243813414753	-3.9267043356708844	CGACAATGTCACTGACC
chr1	109549795	109549796	chr1:109549796:G:A	rs114984281	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr1	109825448	109825449	chr1:109825449:G:A	rs117223302	G	A	g	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr1	109980601	109980602	chr1:109980602:A:G	chr1:109980602:A:G	A	G	A	Sox3.mouse_HMG_2	2	1	+	7.19551027986074	5.3232923889643855	TTACAATGTCAGTGGTG
chr1	110236461	110236462	chr1:110236462:A:G	rs11102066	A	G	A	Sox3.mouse_HMG_2	6	1	-	4.953554243309453	-1.4357271910684373	AATCAATTGCAGTTAAG
chr1	110330546	110330547	chr1:110330547:T:C	rs12135320	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr1	110346815	110346816	chr1:110346816:G:A	rs12143620	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr1	110633364	110633365	chr1:110633365:A:C	rs884217	A	C	A	Sox3.mouse_HMG_2	2	1	+	6.143593079088531	3.0583525483463228	CCACCATGTTATTGATG
chr1	110634713	110634714	chr1:110634714:G:A	rs148254323	G	A	G	Sox3.mouse_HMG_2	3	1	-	2.026537504163689	-2.8303183710585333	CATCAAGGTCACTGAGG
chr1	110638177	110638178	chr1:110638178:A:G	rs17026200	A	G	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr1	110714556	110714557	chr1:110714557:A:T	rs12074788	A	T	A	Sox3.mouse_HMG_2	10	1	+	3.5303851571578586	-3.378369622157362	AATCATTTTCAGTGTTG
chr1	110724687	110724688	chr1:110724688:G:A	rs343608	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr1	110756583	110756584	chr1:110756584:T:A	rs72683708	T	A	T	Sox3.mouse_HMG_2	3	1	+	8.864366638036849	6.820552274000164	CTTTAATGTCATTGAAT
chr1	110964618	110964619	chr1:110964619:G:T	rs115687372	G	T	G	Sox3.mouse_HMG_2	8	1	+	4.1776238950732845	4.991261828077496	CATCCATTGTATTCATT
chr1	111085896	111085897	chr1:111085897:G:A	rs56200127	G	A	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr1	111141049	111141050	chr1:111141050:A:G	rs142775180	A	G	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr1	111205181	111205182	chr1:111205182:C:T	rs574531344	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	111211993	111211994	chr1:111211994:T:C	rs2783442	T	C	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr1	111463205	111463206	chr1:111463206:T:C	rs114580450	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	111463222	111463223	chr1:111463223:C:G	rs78160095	C	G	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr1	111499572	111499573	chr1:111499573:T:C	rs1415792	T	C	C	Sox3.mouse_HMG_2	9	1	+	3.3364775812617253	2.6438250383897657	CCACAATGGTATGGAAA
chr1	111513489	111513490	chr1:111513490:T:G	rs79006432	T	G	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	111620947	111620948	chr1:111620948:T:G	rs565309	T	G	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr1	111812187	111812188	chr1:111812188:G:A	rs60237243	G	A	A	Sox3.mouse_HMG_2	9	1	-	0.8553721981563202	1.548024741028279	CATCACTGTCGGTGAAG
chr1	112517809	112517810	chr1:112517810:A:G	rs3737136	A	G	A	Sox3.mouse_HMG_2	15	1	-	3.604786644982495	-0.1750127725233011	AATAAACTTTATTGATT
chr1	113125721	113125722	chr1:113125722:G:A	rs10494150	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr1	113335323	113335324	chr1:113335324:T:A	rs4839313	T	A	T	Sox3.mouse_HMG_2	6	1	+	3.6471747792745637	-3.260900448518494	CCTCAATGTTAATGGCT
chr1	113758712	113758713	chr1:113758713:C:T	rs61817589	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr1	113991831	113991832	chr1:113991832:A:G	rs872661	A	G	A	Sox3.mouse_HMG_2	5	1	+	5.114115689654794	-1.2751657447230949	TAGCAATGATATTAATA
chr1	114131963	114131964	chr1:114131964:C:G	rs115943992	C	G	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr1	114558549	114558550	chr1:114558550:G:A	rs4839384	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr1	114581930	114581931	chr1:114581931:C:T	rs529234780	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr1	114808186	114808187	chr1:114808187:C:T	rs61811044	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	115052717	115052718	chr1:115052718:C:A	rs113587983	C	A	C	Sox3.mouse_HMG_2	16	1	-	2.939387620324254	3.3031093099582	AGGCAATGGCATAGATG
chr1	115052731	115052732	chr1:115052732:C:T	rs112518329	C	T	C	Sox3.mouse_HMG_2	2	1	-	2.939387620324254	4.811605511220608	AGGCAATGGCATAGATG
chr1	115063689	115063690	chr1:115063690:T:A	rs1000552036	T	A	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr1	115144644	115144645	chr1:115144645:C:T	rs7528116	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr1	115204544	115204545	chr1:115204545:C:A	rs12081462	C	A	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr1	115331082	115331083	chr1:115331083:A:G	rs146963439	A	G	A	Sox3.mouse_HMG_2	5	1	+	1.8178823999367844	-4.5713990344411055	CTGCAATGTCAATGAGG
chr1	115437350	115437351	chr1:115437351:C:T	rs750403	C	T	C	Sox3.mouse_HMG_2	10	1	-	2.927654578724054	9.836409358039276	AAACAATTATGGTGATG
chr1	115462086	115462087	chr1:115462087:G:A	rs531818616	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr1	115544389	115544390	chr1:115544390:G:A	rs12095448	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr1	115544434	115544435	chr1:115544435:A:G	rs4839454	A	G	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr1	115671657	115671658	chr1:115671658:A:G	rs10801913	A	G	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	115715379	115715380	chr1:115715380:G:A	rs74226092	G	A	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	115783348	115783349	chr1:115783349:T:C	rs139811594	T	C	T	Sox3.mouse_HMG_2	11	1	+	2.8097874016539626	-3.8745867978063724	CTCCAATTTTATAGATG
chr1	115783363	115783364	chr1:115783364:G:A	rs75108272	G	A	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr1	116106844	116106845	chr1:116106845:A:G	rs79777502	A	G	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr1	116289890	116289891	chr1:116289891:T:G	rs12121265	T	G	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr1	116478013	116478014	chr1:116478014:C:T	rs115584071	C	T	C	Sox3.mouse_HMG_2	0	1	-	2.4117464665871653	0.7152541728845028	GGTCCATGGTAGTGGAA
chr1	116541787	116541788	chr1:116541788:G:A	rs12141411	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr1	116737432	116737433	chr1:116737433:T:C	rs72697386	T	C	T	Sox3.mouse_HMG_2	5	1	-	5.099981126420303	-1.2893003079575855	TGTCAATTTCACTGGTT
chr1	116834066	116834067	chr1:116834067:A:G	rs2767327	A	G	A	Sox3.mouse_HMG_2	6	1	-	2.0344174022724664	-4.354864032105424	TGACAATGGCAGAGAAG
chr1	116991024	116991025	chr1:116991025:C:T	rs79634644	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr1	117001793	117001794	chr1:117001794:C:T	rs374341961	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr1	117003941	117003942	chr1:117003942:A:T	rs75378515	A	T	A	Sox3.mouse_HMG_2	1	1	+	12.548083481929686	9.852859922876387	GATCAATTACATTGGTT
chr1	117007045	117007046	chr1:117007046:A:G	rs76234348	A	G	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr1	117117985	117117986	chr1:117117986:C:T	rs1289655	C	T	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	117181008	117181009	chr1:117181009:C:T	rs2185815	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr1	117347756	117347757	chr1:117347757:C:T	rs10923268	C	T	C	Sox3.mouse_HMG_2	7	1	-	4.523676533324414	-2.1051449617636435	AAGCAATGTTAGTCATA
chr1	117824678	117824679	chr1:117824679:T:C	rs6680046	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	118109125	118109126	chr1:118109126:T:C	rs150264376	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr1	118934970	118934971	chr1:118934971:A:T	rs6656528	A	T	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	119482647	119482648	chr1:119482648:G:A	rs1187987196	G	A	.	Sox3.mouse_HMG_2	3	1	-	4.667724212742826	-0.18913166247939522	GCTCAATGCTAGGGAGA
chr1	119746116	119746117	chr1:119746117:C:G	rs4391705	C	G	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	119781882	119781883	chr1:119781883:G:A	rs2582784	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	119796626	119796627	chr1:119796627:G:A	rs1441012	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr1	119925863	119925864	chr1:119925864:T:C	rs6658796	T	C	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	120179778	120179779	chr1:120179779:A:C	chr1:120179779:A:C	A	C	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr1	120356470	120356471	chr1:120356471:C:T	rs4233081	C	T	c	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr1	120356513	120356514	chr1:120356514:A:C	rs4233080	A	C	a	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	121032920	121032921	chr1:121032921:C:T	rs1324534302	C	T	c	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr1	121121903	121121904	chr1:121121904:C:T	rs145769612	C	T	c	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	121541677	121541678	chr1:121541678:T:A	rs11249432	T	A	-	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	125080368	125080369	chr1:125080369:C:T	rs1489436730	C	T	.	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr1	125080879	125080880	chr1:125080880:C:A	rs1219494200	C	A	.	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr1	125080881	125080882	chr1:125080882:T:C	rs1320009693	T	C	.	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr1	125150071	125150072	chr1:125150072:C:T	rs917215021	C	T	.	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr1	145708448	145708449	chr1:145708449:C:T	rs34252135	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr1	145805189	145805190	chr1:145805190:A:G	rs368823068	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.651262657227296	-1.7380187771505948	CATCAATGACATAGGAG
chr1	145823079	145823080	chr1:145823080:A:G	rs1386606282	A	G	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr1	145826264	145826265	chr1:145826265:A:G	rs141373368	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr1	145886491	145886492	chr1:145886492:T:C	rs587758192	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr1	146037487	146037488	chr1:146037488:G:C	rs79585658	G	C	.	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr1	147027141	147027142	chr1:147027142:G:C	rs6704429	G	C	.	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	147027145	147027146	chr1:147027146:G:A	rs11587105	G	A	.	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	147041616	147041617	chr1:147041617:G:C	rs72704288	G	C	.	Sox3.mouse_HMG_2	1	1	-	4.159572577492402	4.868626171816886	TCAAAATGGCATTGATG
chr1	147092027	147092028	chr1:147092028:C:T	rs72706418	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	147739196	147739197	chr1:147739197:T:C	rs10465884	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr1	149588888	149588889	chr1:149588889:G:T	rs2646900	G	T	.	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr1	149816972	149816973	chr1:149816973:G:A	rs1198153273	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	149886762	149886763	chr1:149886763:G:C	rs74124040	G	C	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr1	149886778	149886779	chr1:149886779:T:C	chr1:149886779:T:C	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr1	150050849	150050850	chr1:150050850:G:A	rs72692873	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr1	150342959	150342960	chr1:150342960:T:C	rs1272798	T	C	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	150430136	150430137	chr1:150430137:C:G	rs12726415	C	G	G	Sox3.mouse_HMG_2	1	1	-	1.7710999293588898	1.0620463350344078	TGTCAATTGTGGTGGTC
chr1	150433972	150433973	chr1:150433973:A:C	rs9436112	A	C	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	150464445	150464446	chr1:150464446:A:G	rs75323812	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.0306926455432	-4.35858878883469	TATCAAACTCATTGAAG
chr1	150749084	150749085	chr1:150749085:A:G	rs181085131	A	G	A	Sox3.mouse_HMG_2	5	1	+	7.112417093010469	0.7231356586325806	ACACAATGATATTGAAA
chr1	151512394	151512395	chr1:151512395:A:G	rs11802310	A	G	A	Sox3.mouse_HMG_2	4	1	+	2.56271200027242	-3.826569434105467	AACCAATTTCCTTGATG
chr1	151756279	151756280	chr1:151756280:C:T	rs11204880	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	151817513	151817514	chr1:151817514:C:G	rs113229369	C	G	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	151989959	151989960	chr1:151989960:T:C	rs74501641	T	C	T	Sox3.mouse_HMG_2	12	1	+	4.8162124843081395	-1.234754653622677	ATTCAATTTCATTTAAT
chr1	152680848	152680849	chr1:152680849:A:C	rs10788844	A	C	-	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr1	152720385	152720386	chr1:152720386:G:C	rs3814351	G	C	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr1	152751056	152751057	chr1:152751057:A:G	rs1412550	A	G	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr1	153244886	153244887	chr1:153244887:A:G	rs11205248	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	153532386	153532387	chr1:153532387:A:G	rs114719191	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr1	153723504	153723505	chr1:153723505:C:T	rs7545253	C	T	T	Sox3.mouse_HMG_2	9	1	+	3.0052199310306893	3.697872473902649	TATAGATTGCATTGATT
chr1	153991506	153991507	chr1:153991507:A:G	rs114120114	A	G	a	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr1	154586559	154586560	chr1:154586560:G:C	rs6683149	G	C	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	154693873	154693874	chr1:154693874:C:T	rs11264243	C	T	C	Sox3.mouse_HMG_2	13	1	-	1.4859825759112795	-4.565655928275032	GCTCAATGGGATAGAAG
chr1	154720527	154720528	chr1:154720528:T:C	rs77510509	T	C	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr1	154744406	154744407	chr1:154744407:T:C	rs10908431	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	154744410	154744411	chr1:154744411:C:T	rs78651737	C	T	c	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr1	154757464	154757465	chr1:154757465:T:C	rs11804231	T	C	T	Sox3.mouse_HMG_2	1	1	+	8.343832429609982	8.323614452319338	TTACAATTGTATTGAAG
chr1	154764450	154764451	chr1:154764451:T:C	rs12129712	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr1	154841876	154841877	chr1:154841877:C:T	rs13376333	C	T	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr1	155045188	155045189	chr1:155045189:T:C	rs114543508	T	C	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr1	155102572	155102573	chr1:155102573:C:A	rs577082737	C	A	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	155103566	155103567	chr1:155103567:C:T	rs4625273	C	T	c	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr1	156109291	156109292	chr1:156109292:C:T	rs915180	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	156178373	156178374	chr1:156178374:T:C	rs6701295	T	C	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	156338313	156338314	chr1:156338314:G:A	rs114297274	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr1	156338335	156338336	chr1:156338336:C:T	chr1:156338336:C:T	C	T	C	Sox3.mouse_HMG_2	12	1	-	1.6323356164569085	1.9679571511978078	GATCAATGAGATGGGTG
chr1	156376271	156376272	chr1:156376272:T:C	rs74229292	T	C	T	Sox3.mouse_HMG_2	11	1	+	7.205120008035906	0.5207458085755711	CATCATTTGCATTGAAG
chr1	156937288	156937289	chr1:156937289:T:C	rs945508	T	C	C	Sox3.mouse_HMG_2	11	1	+	7.134342301054699	0.44996810159436323	GCTCAATGGTATGGAAG
chr1	157047097	157047098	chr1:157047098:T:C	rs539331161	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	157102533	157102534	chr1:157102534:G:A	rs16838089	G	A	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr1	157287336	157287337	chr1:157287337:C:A	rs7533959	C	A	c	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr1	157646511	157646512	chr1:157646512:A:G	rs12097236	A	G	C	Sox3.mouse_HMG_2	16	1	+	3.747723223529101	3.9592976500143515	TCTCAATTTCATAGTTA
chr1	157705206	157705207	chr1:157705207:G:T	rs2317230	G	T	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	157774074	157774075	chr1:157774075:A:G	rs60252565	A	G	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	157777283	157777284	chr1:157777284:A:T	rs7517586	A	T	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr1	158104429	158104430	chr1:158104430:G:A	rs17421546	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr1	158495150	158495151	chr1:158495151:C:T	rs1259002340	C	T	C	Sox3.mouse_HMG_2	2	1	-	5.225072860701763	7.097290751598116	AAGCAATGCTATTCATT
chr1	158741503	158741504	chr1:158741504:A:C	rs2852643	A	C	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr1	158773578	158773579	chr1:158773579:T:C	rs73015561	T	C	T	Sox3.mouse_HMG_2	11	1	+	10.486985258208623	3.802611058748287	TCTCAATTTCATTGAAC
chr1	158989996	158989997	chr1:158989997:C:T	rs77367064	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.882456218126259	-3.1691822860600527	TATCCATTCTATTGTGT
chr1	159015344	159015345	chr1:159015345:A:G	rs1361565	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	159046642	159046643	chr1:159046643:A:C	rs115506051	A	C	.	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	159162741	159162742	chr1:159162742:G:A	rs12045546	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	159557001	159557002	chr1:159557002:A:C	rs4656239	A	C	C	Sox3.mouse_HMG_2	2	1	-	3.5776729529061635	-1.5762017137737259	CTTCAGTGTTATGGATG
chr1	159587651	159587652	chr1:159587652:G:A	rs995982666	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	159635309	159635310	chr1:159635310:T:C	rs2592881	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr1	159819472	159819473	chr1:159819473:A:C	rs76603630	A	C	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr1	159932229	159932230	chr1:159932230:C:T	rs72702746	C	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	159932261	159932262	chr1:159932262:T:C	rs75494729	T	C	T	Sox3.mouse_HMG_2	12	1	+	6.109713218101638	0.058746080170821544	GGTCAAGGTTAGTGAGA
chr1	159979860	159979861	chr1:159979861:T:C	rs2789425	T	C	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr1	160019136	160019137	chr1:160019137:A:G	rs1934080	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr1	160053301	160053302	chr1:160053302:A:G	rs12122979	A	G	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	160149467	160149468	chr1:160149468:A:G	rs12089245	A	G	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	160149489	160149490	chr1:160149490:G:C	rs911229	G	C	G	Sox3.mouse_HMG_2	16	1	+	6.232227220043508	4.992955860017003	TAGCAATTTTATTAATG
chr1	160285210	160285211	chr1:160285211:C:G	rs186324994	C	G	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr1	160285212	160285213	chr1:160285213:G:A	rs12086288	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr1	160343113	160343114	chr1:160343114:C:G	rs7555490	C	G	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr1	160349264	160349265	chr1:160349265:T:C	rs12239946	T	C	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr1	160363155	160363156	chr1:160363156:A:C	chr1:160363156:A:C	A	C	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr1	160576865	160576866	chr1:160576866:C:T	rs2369721	C	T	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	160664797	160664798	chr1:160664798:C:T	rs6427540	C	T	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr1	160707996	160707997	chr1:160707997:A:C	rs3914854	A	C	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr1	160714744	160714745	chr1:160714745:A:C	rs352689	A	C	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	160714759	160714760	chr1:160714760:T:G	rs352690	T	G	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr1	160795943	160795944	chr1:160795944:G:T	rs115154491	G	T	g	Sox3.mouse_HMG_2	1	1	+	1.0302430314886297	0.341407414454792	TGTCAAAGCAAGTGATG
chr1	160908648	160908649	chr1:160908649:C:T	rs56294243	C	T	.	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	160993580	160993581	chr1:160993581:A:G	rs746235617	A	G	A	Sox3.mouse_HMG_2	16	1	-	4.995454826848404	3.392461777187953	ATTAAATTTTATTGAAT
chr1	161175214	161175215	chr1:161175215:C:T	rs3813620	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr1	161986013	161986014	chr1:161986014:C:T	rs2341465	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr1	162019627	162019628	chr1:162019628:T:C	rs6427645	T	C	C	Sox3.mouse_HMG_2	11	1	+	3.5568562657100236	-3.127517933750311	CAGCAATTTTCTTGAAG
chr1	162063135	162063136	chr1:162063136:T:G	rs16847220	T	G	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	162305937	162305938	chr1:162305938:A:G	rs1396224	A	G	A	Sox3.mouse_HMG_2	16	1	-	5.479007725612726	3.876014675952275	AATCAATTACATTTAAT
chr1	162670858	162670859	chr1:162670859:A:G	rs4656376	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr1	162671432	162671433	chr1:162671433:G:A	rs548753231	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr1	162671433	162671434	chr1:162671434:A:G	rs565660767	A	G	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr1	162840672	162840673	chr1:162840673:C:A	rs72713314	C	A	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	162917628	162917629	chr1:162917629:C:T	rs12143958	C	T	C	Sox3.mouse_HMG_2	0	1	-	1.5864966552887863	-0.10999563841387455	GGCCAATTCCACTGATT
chr1	163258143	163258144	chr1:163258144:C:A	rs116332261	C	A	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr1	163396014	163396015	chr1:163396015:T:A	chr1:163396015:T:A	T	A	T	Sox3.mouse_HMG_2	6	1	+	5.126844985863365	-1.7812302419296915	TAACAATGCTAATGAGA
chr1	163875295	163875296	chr1:163875296:A:G	rs11811326	A	G	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr1	163875340	163875341	chr1:163875341:C:T	rs17366417	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	164058311	164058312	chr1:164058312:G:A	rs61811205	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr1	164058323	164058324	chr1:164058324:C:T	rs144023894	C	T	C	Sox3.mouse_HMG_2	11	1	-	0.7174967345367316	-3.853987393796553	GGGCAAGGGTAGTGAGT
chr1	164240424	164240425	chr1:164240425:T:C	rs1338987	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.445670726640543	-4.943610707737346	GTTCAATGCTGGTGCTT
chr1	164671959	164671960	chr1:164671960:G:A	rs12723705	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	164913495	164913496	chr1:164913496:G:T	rs4347190	G	T	G	Sox3.mouse_HMG_2	3	1	-	2.6390007565600504	-4.261669482698855	TTTCAATGTTGCTGATT
chr1	165054748	165054749	chr1:165054749:T:C	rs1494416	T	C	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr1	165173986	165173987	chr1:165173987:T:C	rs16840542	T	C	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr1	165194839	165194840	chr1:165194840:T:C	rs16840887	T	C	T	Sox3.mouse_HMG_2	2	1	+	2.8802611056609324	-3.486636200864814	CATTGATGGCATTGACT
chr1	165228606	165228607	chr1:165228607:T:C	rs10494437	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr1	165384090	165384091	chr1:165384091:G:T	rs1846940	G	T	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	165955381	165955382	chr1:165955382:T:G	rs4540635	T	G	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr1	165955382	165955383	chr1:165955383:G:C	rs13375130	G	C	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	166062306	166062307	chr1:166062307:C:G	rs74118964	C	G	C	Sox3.mouse_HMG_2	11	1	-	2.3841996260515086	-2.9196523959950027	TATCAAATGCAGTGTTC
chr1	166283440	166283441	chr1:166283441:G:C	rs539385918	G	C	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr1	166352800	166352801	chr1:166352801:C:T	rs11587733	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr1	166355108	166355109	chr1:166355109:A:G	rs148552395	A	G	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr1	166487238	166487239	chr1:166487239:T:G	rs7552571	T	G	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr1	166514293	166514294	chr1:166514294:T:C	rs12097144	T	C	T	Sox3.mouse_HMG_2	6	1	+	6.819524401748605	0.4302429673707134	TATCAATTTTATTTTTA
chr1	166571162	166571163	chr1:166571163:T:C	rs12143336	T	C	T	Sox3.mouse_HMG_2	11	1	+	3.927868415660728	-2.7565057837996068	CTGCAATGTTATTGCTC
chr1	166571174	166571175	chr1:166571175:T:C	rs17430677	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr1	167152723	167152724	chr1:167152724:C:T	rs4657638	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	167163498	167163499	chr1:167163499:T:G	rs34758860	T	G	t	Sox3.mouse_HMG_2	16	1	+	3.9867376754684454	3.6230159858344995	CAACAATTCAATTGACT
chr1	167435894	167435895	chr1:167435895:G:A	rs1723023	G	A	G	Sox3.mouse_HMG_2	16	1	-	3.330347694108105	4.9333407437685555	TGTCGATTTCATTGACC
chr1	167504187	167504188	chr1:167504188:A:T	rs1737506	A	T	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr1	167516397	167516398	chr1:167516398:A:C	rs1737502	A	C	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr1	167623505	167623506	chr1:167623506:A:C	rs1229399	A	C	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr1	167674443	167674444	chr1:167674444:C:T	rs57318878	C	T	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	167726456	167726457	chr1:167726457:G:C	rs12069064	G	C	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr1	167792498	167792499	chr1:167792499:G:C	rs115541635	G	C	g	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	167856246	167856247	chr1:167856247:T:C	rs2071921	T	C	t	Sox3.mouse_HMG_2	10	1	-	2.153092243735615	-4.755662535579606	CTACATTGTCATTGGTG
chr1	167862325	167862326	chr1:167862326:A:T	rs1521877	A	T	t	Sox3.mouse_HMG_2	8	1	-	6.275859697189589	4.243431379440881	CATCAGTTTTATTGGAT
chr1	167938131	167938132	chr1:167938132:C:T	rs367545192	C	T	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr1	168285899	168285900	chr1:168285900:C:T	rs182270912	C	T	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr1	168325011	168325012	chr1:168325012:G:A	rs2300573	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr1	168484156	168484157	chr1:168484157:A:T	rs858113	A	T	T	Sox3.mouse_HMG_2	2	1	+	3.2259078620895103	6.507564637873047	TAACAATGTTATTTCTT
chr1	168484189	168484190	chr1:168484190:C:G	rs10918906	C	G	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr1	168592295	168592296	chr1:168592296:C:T	rs4656606	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr1	168643335	168643336	chr1:168643336:G:A	rs4488008	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr1	168844002	168844003	chr1:168844003:A:C	rs6695006	A	C	A	Sox3.mouse_HMG_2	6	1	-	5.6286484173538	-1.279426810439257	CTTCAATTTCAATGGTT
chr1	168844003	168844004	chr1:168844004:T:C	rs75819660	T	C	T	Sox3.mouse_HMG_2	5	1	-	5.6286484173538	-0.76063301702409	CTTCAATTTCAATGGTT
chr1	168894601	168894602	chr1:168894602:T:C	rs908931118	T	C	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr1	169708151	169708152	chr1:169708152:C:T	rs3766129	C	T	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr1	169886434	169886435	chr1:169886435:A:G	rs3766151	A	G	G	Sox3.mouse_HMG_2	6	1	-	6.959870168425237	0.5705887340473464	AGTCAATGTTATTTAAG
chr1	170471217	170471218	chr1:170471218:A:G	rs12747498	A	G	A	Sox3.mouse_HMG_2	15	1	-	2.9009102955014257	-0.8788891220043701	CAATAATATTAGTGATG
chr1	171741264	171741265	chr1:171741265:C:T	rs2298914	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	171834661	171834662	chr1:171834662:T:C	rs6698366	T	C	T	Sox3.mouse_HMG_2	11	1	+	6.542484686871006	-0.14188951258932997	GTTCCATGTCATTGAAA
chr1	172162144	172162145	chr1:172162145:C:T	rs61807787	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	172454156	172454157	chr1:172454157:T:A	rs6424923	T	A	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr1	172495758	172495759	chr1:172495759:C:A	rs12068145	C	A	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr1	172616515	172616516	chr1:172616516:A:G	rs9425646	A	G	G	Sox3.mouse_HMG_2	2	1	-	2.0712957000572785	-4.295601606468465	TGTCAATGCTGTTGTAG
chr1	172658357	172658358	chr1:172658358:C:T	rs763110	C	T	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr1	172711428	172711429	chr1:172711429:C:T	rs56663247	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	172903815	172903816	chr1:172903816:A:G	rs16845066	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.8312435800295837	-2.558037854348306	CTTCAATTTCACTGTTG
chr1	173206807	173206808	chr1:173206808:C:T	rs79280399	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr1	173430271	173430272	chr1:173430272:T:G	rs113786438	T	G	T	Sox3.mouse_HMG_2	0	1	-	4.669924758348242	6.061783534526717	AAACAATGTTATTTGTG
chr1	173570497	173570498	chr1:173570498:G:A	rs80054184	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr1	173862962	173862963	chr1:173862963:G:A	rs9660185	G	A	G	Sox3.mouse_HMG_2	9	1	-	2.7300951347235287	3.4227476775954884	TCACAATCTCATTGAAA
chr1	173862979	173862980	chr1:173862980:A:G	rs79243836	A	G	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr1	174427608	174427609	chr1:174427609:C:T	rs10912786	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr1	174789299	174789300	chr1:174789300:C:G	rs140804258	C	G	C	Sox3.mouse_HMG_2	11	1	-	8.841174141790278	3.5373221197437665	GGTTAATTGCAGTGATT
chr1	175076197	175076198	chr1:175076198:A:T	rs6703323	A	T	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	175132499	175132500	chr1:175132500:A:C	rs80057632	A	C	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr1	175237688	175237689	chr1:175237689:G:A	rs12135975	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr1	175247264	175247265	chr1:175247265:C:A	rs71645237	C	A	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr1	175564903	175564904	chr1:175564904:C:T	rs78083726	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr1	175564906	175564907	chr1:175564907:C:T	chr1:175564907:C:T	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr1	175985445	175985446	chr1:175985446:G:A	rs77494806	G	A	G	Sox3.mouse_HMG_2	11	1	+	6.075372901349395	1.5038887730161101	ATTCAATTTCAGAGATT
chr1	176829223	176829224	chr1:176829224:T:C	rs16850236	T	C	T	Sox3.mouse_HMG_2	11	1	+	3.3191757188454236	-3.365198480614911	TCTCAATGTACTTGATT
chr1	176905578	176905579	chr1:176905579:T:C	rs2205889	T	C	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr1	177021280	177021281	chr1:177021281:G:T	rs7545444	G	T	T	Sox3.mouse_HMG_2	16	1	-	1.8471897912777124	2.874886724818967	TCTCAATGTCTGTGACC
chr1	177943686	177943687	chr1:177943687:G:A	rs4652281	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.1203090310340125	-3.9313294731522994	GCTCAGTGTCAGTGGGG
chr1	177958518	177958519	chr1:177958519:C:A	rs16828589	C	A	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr1	178242186	178242187	chr1:178242187:C:A	rs623225	C	A	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr1	178283097	178283098	chr1:178283098:C:A	rs548322153	C	A	C	Sox3.mouse_HMG_2	8	1	+	2.8215955280475	2.0435891764544603	TGTCAATTCCTGTGAGT
chr1	178310517	178310518	chr1:178310518:A:G	rs12022185	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.190982595410311	-0.19829883896757955	AATCAATTTTACTGTTT
chr1	178573462	178573463	chr1:178573463:G:A	rs143218531	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr1	179027277	179027278	chr1:179027278:A:G	rs10913673	A	G	A	Sox3.mouse_HMG_2	2	1	-	5.4250656020673125	-0.9418317044584334	AATCAACGCCAGTGAAA
chr1	179126412	179126413	chr1:179126413:C:T	rs28914528	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr1	179346221	179346222	chr1:179346222:C:A	rs2152319	C	A	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr1	179424850	179424851	chr1:179424851:T:C	rs7513782	T	C	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr1	179545641	179545642	chr1:179545642:G:T	rs2296960	G	T	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr1	179664025	179664026	chr1:179664026:C:T	rs12042409	C	T	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr1	179851657	179851658	chr1:179851658:G:A	rs4301600	G	A	G	Sox3.mouse_HMG_2	8	1	+	2.2370367465299656	1.0182463617854696	CATCAATGGTAGCAAAA
chr1	179874155	179874156	chr1:179874156:T:G	rs668813	T	G	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	180068441	180068442	chr1:180068442:A:C	rs12138429	A	C	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	180168703	180168704	chr1:180168704:A:G	rs150472198	A	G	A	Sox3.mouse_HMG_2	10	1	+	4.101218648686006	-2.807536130629213	GATTAAATACATTGATT
chr1	180237404	180237405	chr1:180237405:C:A	rs4652488	C	A	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	180269359	180269360	chr1:180269360:A:G	rs2290478	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr1	180469759	180469760	chr1:180469760:A:T	rs6663823	A	T	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	180554747	180554748	chr1:180554748:T:G	rs7551178	T	G	G	Sox3.mouse_HMG_2	11	1	+	15.219778022405006	13.83925584499118	TGTCAATTTTATTGATA
chr1	180567960	180567961	chr1:180567961:C:T	rs76044604	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	180787919	180787920	chr1:180787920:A:G	rs3761904	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr1	181149555	181149556	chr1:181149556:T:C	rs12066554	T	C	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr1	181423562	181423563	chr1:181423563:T:C	rs631583	T	C	C	Sox3.mouse_HMG_2	10	1	-	4.230426095199474	-2.6783286841157468	TGTGAATGCCAGTGAGA
chr1	181643800	181643801	chr1:181643801:C:T	rs10910978	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr1	182094827	182094828	chr1:182094828:T:G	rs7545241	T	G	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr1	182374214	182374215	chr1:182374215:G:A	rs79038403	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr1	182444413	182444414	chr1:182444414:G:A	rs73057336	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr1	182574530	182574531	chr1:182574531:T:G	rs1048254	T	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr1	182579471	182579472	chr1:182579472:C:A	rs557934	C	A	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr1	182606535	182606536	chr1:182606536:G:A	rs3754289	G	A	G	Sox3.mouse_HMG_2	3	1	-	6.537277496551518	1.680421621329295	CATCAATGCCTTTGTTT
chr1	182732524	182732525	chr1:182732525:A:G	rs6678355	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr1	182770466	182770467	chr1:182770467:T:C	rs36125699	T	C	T	Sox3.mouse_HMG_2	11	1	+	2.37974826010612	-4.304625939354215	TAGCAAGTTCATTGAAG
chr1	182795968	182795969	chr1:182795969:C:T	rs6698614	C	T	C	Sox3.mouse_HMG_2	3	1	+	5.59939371960975	0.7425378443875279	GGACAATGTCAGTGTGT
chr1	182845147	182845148	chr1:182845148:T:C	rs6674915	T	C	C	Sox3.mouse_HMG_2	9	1	+	7.416451390750646	6.723798847878687	CTTTAATTTTATTGGTT
chr1	183060843	183060844	chr1:183060844:G:T	rs73051750	G	T	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr1	183094602	183094603	chr1:183094603:G:A	rs7542640	G	A	A	Sox3.mouse_HMG_2	7	1	+	1.7291252251079854	-4.899696269980071	TATCAAGGCCAGTCATA
chr1	183190241	183190242	chr1:183190242:T:C	rs1005716	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr1	183620489	183620490	chr1:183620490:C:T	rs10797895	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	183638971	183638972	chr1:183638972:C:T	rs12024089	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	183689519	183689520	chr1:183689520:T:C	chr1:183689520:T:C	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	183689525	183689526	chr1:183689526:T:G	chr1:183689526:T:G	T	G	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	183872792	183872793	chr1:183872793:C:G	rs10752922	C	G	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr1	184020180	184020181	chr1:184020181:A:G	rs16822334	A	G	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr1	184151070	184151071	chr1:184151071:T:A	rs114398179	T	A	T	Sox3.mouse_HMG_2	8	1	+	6.754059113356257	4.721630795607547	GTTCAAAGTCATTGAAG
chr1	184480817	184480818	chr1:184480818:T:G	rs12082456	T	G	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	184634860	184634861	chr1:184634861:A:C	chr1:184634861:A:C	A	C	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr1	184634864	184634865	chr1:184634865:A:G	chr1:184634865:A:G	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	184825251	184825252	chr1:184825252:C:G	rs10797989	C	G	C	Sox3.mouse_HMG_2	4	1	-	2.70907762217786	2.1902838287626913	TCTCGATTGCAGTGAGG
chr1	184953651	184953652	chr1:184953652:C:T	rs73054649	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	185696545	185696546	chr1:185696546:C:T	rs35823130	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr1	185917917	185917918	chr1:185917918:C:A	rs115863866	C	A	C	Sox3.mouse_HMG_2	9	1	-	3.5954559130581396	9.57943717294246	TCTCAATTGGAGTGAGA
chr1	185972642	185972643	chr1:185972643:G:A	rs6688811	G	A	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr1	186079541	186079542	chr1:186079542:C:T	rs114560616	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr1	186186919	186186920	chr1:186186920:A:G	rs682568	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.7492653187474767	-2.640016115630412	TAAGAATTGTATTGAAC
chr1	186596065	186596066	chr1:186596066:A:G	rs11805124	A	G	G	Sox3.mouse_HMG_2	6	1	-	3.4320735620301903	-2.9572078723477	TTTCAATTTTAGTCAAC
chr1	186663184	186663185	chr1:186663185:C:T	rs10911902	C	T	C	Sox3.mouse_HMG_2	9	1	+	11.254665671503528	11.947318214375487	GATCAGTGTCAGTGATT
chr1	186689697	186689698	chr1:186689698:C:G	rs10911911	C	G	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr1	186887095	186887096	chr1:186887096:C:G	rs16826066	C	G	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr1	186903573	186903574	chr1:186903574:A:G	rs1033409	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	186944869	186944870	chr1:186944870:A:C	rs6683619	A	C	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr1	186995318	186995319	chr1:186995319:T:C	rs12131375	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr1	187034666	187034667	chr1:187034667:G:T	rs10911988	G	T	G	Sox3.mouse_HMG_2	14	1	+	1.6020140179069	0.9006987639298559	GCTCATTTTTAGTGGAG
chr1	187046544	187046545	chr1:187046545:T:C	rs61813663	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.6743568708488494	-4.71492456352904	CCTCAATGTGAGTGGGC
chr1	187103484	187103485	chr1:187103485:C:G	rs1569878	C	G	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	187268031	187268032	chr1:187268032:G:A	rs330749	G	A	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr1	187342588	187342589	chr1:187342589:A:T	rs1148760	A	T	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr1	187577897	187577898	chr1:187577898:T:C	rs2789396	T	C	t	Sox3.mouse_HMG_2	5	1	-	9.383654371504191	2.9943729371262995	TATCAATGCTTGTGATT
chr1	187646937	187646938	chr1:187646938:T:C	rs2066084	T	C	T	Sox3.mouse_HMG_2	8	1	+	2.246288147978285	0.9918661818226152	ACTGAATGTCAATGATG
chr1	187879242	187879243	chr1:187879243:G:C	rs59642144	G	C	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr1	188356406	188356407	chr1:188356407:G:T	rs12021506	G	T	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	188433571	188433572	chr1:188433572:A:G	rs16828702	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr1	188439494	188439495	chr1:188439495:G:C	rs10798213	G	C	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr1	188479331	188479332	chr1:188479332:G:C	rs4414003	G	C	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr1	188498999	188499000	chr1:188499000:C:G	rs68098498	C	G	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr1	188582571	188582572	chr1:188582572:T:C	rs28627959	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr1	189501722	189501723	chr1:189501723:C:T	rs12726610	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr1	189513390	189513391	chr1:189513391:C:T	rs12138948	C	T	t	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr1	190132900	190132901	chr1:190132901:C:T	rs10753936	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	190486413	190486414	chr1:190486414:C:T	rs12034237	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr1	191582222	191582223	chr1:191582223:G:A	rs72727109	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr1	191674719	191674720	chr1:191674720:G:A	rs72727142	G	A	G	Sox3.mouse_HMG_2	8	1	-	3.3333667850955346	4.587788751251204	TATCTATGCTAGAGATT
chr1	192081233	192081234	chr1:192081234:C:G	rs3012196	C	G	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	192291282	192291283	chr1:192291283:A:G	rs6428092	A	G	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr1	192554676	192554677	chr1:192554677:G:A	rs2760519	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr1	192724865	192724866	chr1:192724866:C:A	chr1:192724866:C:A	C	A	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	192861979	192861980	chr1:192861980:C:T	rs1231760	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	193123077	193123078	chr1:193123078:A:T	rs10158344	A	T	a	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	193288714	193288715	chr1:193288715:A:G	rs10801193	A	G	a	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr1	193407109	193407110	chr1:193407110:T:A	rs116454229	T	A	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr1	193495966	193495967	chr1:193495967:T:C	rs10754060	T	C	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr1	193536776	193536777	chr1:193536777:G:T	rs140557168	G	T	g	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	193589103	193589104	chr1:193589104:G:A	rs148051869	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	193589721	193589722	chr1:193589722:A:G	rs568553746	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr1	193589750	193589751	chr1:193589751:C:G	rs731360	C	G	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr1	194063140	194063141	chr1:194063141:G:A	rs1442423	G	A	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	194069657	194069658	chr1:194069658:G:A	rs528691402	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	195531051	195531052	chr1:195531052:G:A	rs7527275	G	A	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr1	195548756	195548757	chr1:195548757:T:C	rs80355645	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr1	195600015	195600016	chr1:195600016:T:C	rs12406671	T	C	T	Sox3.mouse_HMG_2	9	1	+	6.35890505765171	5.6662525147797504	GAACAATTGTAGTGTGT
chr1	195735438	195735439	chr1:195735439:C:A	rs72734164	C	A	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr1	195865848	195865849	chr1:195865849:C:G	rs4587548	C	G	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr1	195901444	195901445	chr1:195901445:A:T	rs16839087	A	T	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr1	196290898	196290899	chr1:196290899:C:T	rs1924757	C	T	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr1	196639027	196639028	chr1:196639028:A:G	rs565088	A	G	G	Sox3.mouse_HMG_2	12	1	-	5.604649647237608	-0.4463174906932093	GAATAATGGTAGTGACT
chr1	197638818	197638819	chr1:197638819:C:T	rs564847785	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr1	197740830	197740831	chr1:197740831:G:A	rs76312929	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr1	197787092	197787093	chr1:197787093:T:G	rs1747822	T	G	G	Sox3.mouse_HMG_2	4	1	-	10.657360265983245	3.749285038190188	AATTAATTTTAGTGATT
chr1	198002000	198002001	chr1:198002001:C:T	rs376940800	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr1	198086362	198086363	chr1:198086363:T:C	rs1233817	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr1	198123423	198123424	chr1:198123424:C:T	rs113161864	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr1	198272721	198272722	chr1:198272722:C:T	rs915404980	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr1	198654053	198654054	chr1:198654054:T:A	rs16843597	T	A	T	Sox3.mouse_HMG_2	13	1	-	5.873475114967006	5.5378535802261055	CGTCAATTTTATTAACA
chr1	198934843	198934844	chr1:198934844:T:C	rs61822073	T	C	T	Sox3.mouse_HMG_2	11	1	-	2.6053148013504512	7.176798929683736	GCTGAATTTCAATGATA
chr1	199066186	199066187	chr1:199066187:C:T	rs322881	C	T	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	199102510	199102511	chr1:199102511:C:T	rs77678300	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	199152201	199152202	chr1:199152202:G:A	rs3861924	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr1	199160613	199160614	chr1:199160614:A:G	rs75424237	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	199394982	199394983	chr1:199394983:G:T	rs4562659	G	T	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr1	199433847	199433848	chr1:199433848:C:A	rs5779967	C	A	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr1	199590457	199590458	chr1:199590458:T:C	rs17696499	T	C	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr1	199821559	199821560	chr1:199821560:C:A	rs17662991	C	A	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr1	199821573	199821574	chr1:199821574:T:C	rs9661058	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.5848175657552566	-4.804463868622632	GGTCAATTTAAGTGCTC
chr1	199844043	199844044	chr1:199844044:G:C	rs11806575	G	C	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr1	200071716	200071717	chr1:200071717:C:T	rs10753863	C	T	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr1	200076357	200076358	chr1:200076358:A:G	chr1:200076358:A:G	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.7766762906377624	-3.6126051437401254	GGACAATGCCATTTGTT
chr1	200834528	200834529	chr1:200834529:C:T	rs6659127	C	T	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr1	201089384	201089385	chr1:201089385:C:T	rs35534614	C	T	C	Sox3.mouse_HMG_2	8	1	-	13.788548510632989	12.569758125888495	CATCAATGGCAGTGAGT
chr1	201197306	201197307	chr1:201197307:T:C	rs11589317	T	C	C	Sox3.mouse_HMG_2	10	1	-	3.485253132457307	-3.4235016468579116	CTTCGATGACAGTGAGT
chr1	201430959	201430960	chr1:201430960:G:T	rs10800777	G	T	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr1	201603875	201603876	chr1:201603876:T:C	rs617301	T	C	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr1	201647498	201647499	chr1:201647499:G:A	rs7364578	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr1	201795176	201795177	chr1:201795177:A:T	rs115084174	A	T	A	Sox3.mouse_HMG_2	2	1	-	2.7216421149039602	-0.5600146608795777	AATCACTGGTAGTGGAA
chr1	201876446	201876447	chr1:201876447:C:A	rs8024	C	A	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr1	201905354	201905355	chr1:201905355:G:A	rs72744806	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr1	202342445	202342446	chr1:202342446:T:C	rs111749026	T	C	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	202579693	202579694	chr1:202579694:C:T	rs967677	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr1	202657736	202657737	chr1:202657737:C:A	rs546579042	C	A	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr1	202664355	202664356	chr1:202664356:C:A	rs16850204	C	A	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	202715739	202715740	chr1:202715740:C:T	rs4245699	C	T	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr1	202845860	202845861	chr1:202845861:G:A	rs113562229	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr1	203114022	203114023	chr1:203114023:G:A	rs17510253	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr1	203371295	203371296	chr1:203371296:C:T	rs1417926	C	T	C	Sox3.mouse_HMG_2	8	1	+	3.0586499453611684	4.313071911516837	GGTCAGTGCCAATGATG
chr1	203419468	203419469	chr1:203419469:T:G	rs12131687	T	G	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	203419503	203419504	chr1:203419504:C:T	rs75401192	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr1	203502026	203502027	chr1:203502027:A:C	rs4481909	A	C	C	Sox3.mouse_HMG_2	6	1	-	3.5139820641104285	-3.394093163682629	AAACAATGTCAGAGAGG
chr1	203535415	203535416	chr1:203535416:C:T	rs35712732	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.9302438092131995	-3.1213946949731124	GTGCAATGGCAGCGATT
chr1	203773993	203773994	chr1:203773994:G:A	rs3820194	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	204300056	204300057	chr1:204300057:G:A	rs4531346	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr1	204494033	204494034	chr1:204494034:A:G	rs773073081	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr1	204638279	204638280	chr1:204638280:T:C	rs58651344	T	C	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	204638294	204638295	chr1:204638295:T:C	rs57886440	T	C	T	Sox3.mouse_HMG_2	6	1	+	2.6900148360707754	-3.6992665983071134	GCACCATTTCATTGAAT
chr1	204638312	204638313	chr1:204638313:C:T	rs11240231	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr1	204967478	204967479	chr1:204967479:A:G	rs12725682	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.040494960793698	-0.34878647358419107	CATGAATCTCATTGATT
chr1	205374499	205374500	chr1:205374500:T:C	rs79345034	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.6817802553654975	-1.7075011790123922	TTTCAATTTCAATGACT
chr1	205374519	205374520	chr1:205374520:G:A	rs12402771	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	205446143	205446144	chr1:205446144:G:A	rs16855619	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	205478193	205478194	chr1:205478194:G:A	rs114285674	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr1	205706111	205706112	chr1:205706112:C:T	rs72750964	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr1	205984697	205984698	chr1:205984698:T:C	rs878898522	T	C	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr1	206470603	206470604	chr1:206470604:G:A	rs41303988	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr1	206470629	206470630	chr1:206470630:A:C	rs17020312	A	C	A	Sox3.mouse_HMG_2	10	1	+	4.916245766338745	-1.992509012976476	CATGAATGACAGTGAGC
chr1	206554705	206554706	chr1:206554706:C:T	rs10779474	C	T	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr1	206587353	206587354	chr1:206587354:A:T	rs7541445	A	T	T	Sox3.mouse_HMG_2	6	1	-	5.763379898514387	-1.144695329278671	AATCAATGCCAGAGAAA
chr1	206587361	206587362	chr1:206587362:C:T	rs7541507	C	T	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	206595697	206595698	chr1:206595698:T:C	rs11584983	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	206712233	206712234	chr1:206712234:C:A	rs12127517	C	A	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	206785437	206785438	chr1:206785438:G:A	chr1:206785438:G:A	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr1	207025497	207025498	chr1:207025498:A:C	rs72741370	A	C	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	207077768	207077769	chr1:207077769:T:A	rs112930070	T	A	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr1	207870061	207870062	chr1:207870062:G:A	rs2745964	G	A	G	Sox3.mouse_HMG_2	2	1	+	6.814979370530003	8.687197261426359	CAGCAATGTCATTTATG
chr1	207944241	207944242	chr1:207944242:G:C	rs11576704	G	C	G	Sox3.mouse_HMG_2	13	1	+	3.421860309134615	-2.9653997297925963	TCAAAATGATATTGATA
chr1	207951858	207951859	chr1:207951859:G:C	rs11118958	G	C	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr1	208002645	208002646	chr1:208002646:T:C	rs567125	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr1	208101116	208101117	chr1:208101117:A:T	rs145120415	A	T	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr1	208111881	208111882	chr1:208111882:A:G	rs145362681	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	208128301	208128302	chr1:208128302:A:T	rs3991423	A	T	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	208245226	208245227	chr1:208245227:T:C	rs1615146	T	C	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	208268005	208268006	chr1:208268006:A:C	rs371130072	A	C	A	Sox3.mouse_HMG_2	1	1	+	1.8819783025408734	-0.8334632338030665	CATCATTTGCATTTATC
chr1	208563920	208563921	chr1:208563921:T:C	rs12029518	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr1	208615691	208615692	chr1:208615692:T:C	rs56768392	T	C	C	Sox3.mouse_HMG_2	1	1	-	4.960156151686051	2.9537682096665923	CACCATTGGTATTGATG
chr1	208988445	208988446	chr1:208988446:A:T	rs10863738	A	T	A	Sox3.mouse_HMG_2	2	1	-	4.406161927265364	1.1245051514818292	AATGAATGGTATGGATG
chr1	209132319	209132320	chr1:209132320:C:T	rs2788166	C	T	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr1	209621206	209621207	chr1:209621207:T:G	rs742255	T	G	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	209651480	209651481	chr1:209651481:G:A	rs3753523	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr1	209658244	209658245	chr1:209658245:T:C	rs742376	T	C	T	Sox3.mouse_HMG_2	10	1	-	7.83303263483113	0.9242778555159092	TTACAATTCTATTGAGT
chr1	209721952	209721953	chr1:209721953:C:G	rs3766619	C	G	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr1	209766253	209766254	chr1:209766254:C:T	rs10779513	C	T	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	209926213	209926214	chr1:209926214:C:T	rs760104847	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr1	209937183	209937184	chr1:209937184:G:A	rs9429829	G	A	G	Sox3.mouse_HMG_2	7	1	+	2.5521752501685837	-4.076646244919471	TCTCAATGTTGTTTATG
chr1	209937191	209937192	chr1:209937192:T:C	rs9429830	T	C	T	Sox3.mouse_HMG_2	15	1	+	2.5521752501685837	-1.2276241673372117	TCTCAATGTTGTTTATG
chr1	210373701	210373702	chr1:210373702:A:G	rs115554358	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr1	210430373	210430374	chr1:210430374:T:G	rs7556076	T	G	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	210445744	210445745	chr1:210445745:A:G	rs3765846	A	G	A	Sox3.mouse_HMG_2	10	1	+	4.825706251107235	-2.0830485282079856	TGTTAATGCAATTGATT
chr1	210829083	210829084	chr1:210829084:C:T	rs76389800	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	210902812	210902813	chr1:210902813:C:T	rs12569344	C	T	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr1	210979093	210979094	chr1:210979094:A:T	rs61849024	A	T	a	Sox3.mouse_HMG_2	10	1	+	2.8085298964112426	-4.100224882903977	TGTCAATTCCACTGACA
chr1	211069581	211069582	chr1:211069582:T:A	rs4951716	T	A	A	Sox3.mouse_HMG_2	1	1	-	9.67647751876052	6.9812539597072245	TATCAATTACAGTGTTT
chr1	211344422	211344423	chr1:211344423:A:G	rs6672742	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr1	211347571	211347572	chr1:211347572:G:C	rs35791308	G	C	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr1	211724967	211724968	chr1:211724968:C:T	rs61828241	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr1	211724970	211724971	chr1:211724971:G:A	rs1773353	G	A	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr1	211865842	211865843	chr1:211865843:T:C	rs28822145	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr1	212012140	212012141	chr1:212012141:A:G	rs962536472	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr1	212012179	212012180	chr1:212012180:T:C	rs955301522	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	212301567	212301568	chr1:212301568:A:G	rs2298115	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr1	212529289	212529290	chr1:212529290:C:G	rs143577983	C	G	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	212529313	212529314	chr1:212529314:A:G	rs1331060	A	G	A	Sox3.mouse_HMG_2	7	1	+	5.783359055034175	12.412180550122232	GATGAATACTATTGATT
chr1	212610598	212610599	chr1:212610599:G:A	rs4951455	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.864597303548122	-3.187041200638189	CATCTGTGGCAGTGATG
chr1	212612234	212612235	chr1:212612235:A:T	rs11571532	A	T	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr1	212818067	212818068	chr1:212818068:A:T	rs12734543	A	T	A	Sox3.mouse_HMG_2	2	1	-	5.866448730793468	2.5847919550099308	GGTCAAGGCTATTGGTG
chr1	213126824	213126825	chr1:213126825:T:C	rs6540780	T	C	C	Sox3.mouse_HMG_2	6	1	+	6.165692107133592	-0.22358932724429864	CTACAATGGCAGTGTTG
chr1	213348217	213348218	chr1:213348218:T:G	rs17020510	T	G	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr1	213370872	213370873	chr1:213370873:G:A	rs80048882	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr1	213468599	213468600	chr1:213468600:C:A	rs320480	C	A	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	213719802	213719803	chr1:213719803:A:G	rs1509871	A	G	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	213720276	213720277	chr1:213720277:G:T	rs114263690	G	T	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr1	213892167	213892168	chr1:213892168:A:G	rs701895	A	G	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr1	214051084	214051085	chr1:214051085:T:C	rs17764516	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr1	214280232	214280233	chr1:214280233:T:A	rs113608074	T	A	t	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr1	214303952	214303953	chr1:214303953:C:T	rs6687411	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr1	214303959	214303960	chr1:214303960:G:A	rs78905729	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr1	214477366	214477367	chr1:214477367:A:G	rs114993046	A	G	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	214665109	214665110	chr1:214665110:A:G	rs112603388	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr1	214865243	214865244	chr1:214865244:G:A	rs10864136	G	A	a	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr1	214968226	214968227	chr1:214968227:C:T	rs10494988	C	T	T	Sox3.mouse_HMG_2	0	1	-	6.069443522224884	4.372951228522221	GATCACTTTCATTGGTC
chr1	215043514	215043515	chr1:215043515:A:G	rs79649803	A	G	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr1	215384574	215384575	chr1:215384575:T:C	rs11120584	T	C	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	215780263	215780264	chr1:215780264:C:T	rs17025416	C	T	C	Sox3.mouse_HMG_2	0	1	-	3.2904866919023883	1.5939943981997249	GATAAATGGTAGTGTGA
chr1	216015355	216015356	chr1:216015356:T:G	rs10779662	T	G	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr1	216015365	216015366	chr1:216015366:T:C	rs376931217	T	C	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr1	216091045	216091046	chr1:216091046:A:C	rs1544299	A	C	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr1	216111411	216111412	chr1:216111412:T:C	rs114266744	T	C	T	Sox3.mouse_HMG_2	4	1	-	2.692681584191846	-3.6965998501860446	GATCAATGGATTTGGTT
chr1	216666771	216666772	chr1:216666772:G:T	rs4532915	G	T	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr1	216750130	216750131	chr1:216750131:C:T	rs2789731	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr1	216904465	216904466	chr1:216904466:G:A	rs114661314	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	217009365	217009366	chr1:217009366:T:A	rs12738035	T	A	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr1	217063330	217063331	chr1:217063331:T:A	rs1416528	T	A	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr1	217063367	217063368	chr1:217063368:A:G	rs372061500	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	217349123	217349124	chr1:217349124:G:A	rs2646803	G	A	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	217418557	217418558	chr1:217418558:C:T	rs265119	C	T	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	217457285	217457286	chr1:217457286:C:T	rs265114	C	T	c	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr1	217483794	217483795	chr1:217483795:G:T	rs2998901	G	T	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	217793840	217793841	chr1:217793841:T:C	rs182668956	T	C	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr1	217965138	217965139	chr1:217965139:G:A	rs10863361	G	A	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	218031403	218031404	chr1:218031404:A:G	rs902351	A	G	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	218703235	218703236	chr1:218703236:T:C	rs79434775	T	C	C	Sox3.mouse_HMG_2	2	1	+	3.741174462508596	-2.6257228440171465	CATTCATGTTATTGAAC
chr1	218945285	218945286	chr1:218945286:A:G	rs1024284697	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	219085226	219085227	chr1:219085227:C:A	rs562830861	C	A	C	Sox3.mouse_HMG_2	0	1	-	8.389523158511798	7.599754626733504	GATTAATTATATTGAGA
chr1	219220982	219220983	chr1:219220983:A:C	rs9663074	A	C	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	219371724	219371725	chr1:219371725:T:C	rs74572593	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.4973960801756214	-2.8918853542022687	AAACAATTGGATTGGTT
chr1	219466962	219466963	chr1:219466963:C:G	rs2605091	C	G	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	219550063	219550064	chr1:219550064:C:T	rs10735496	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr1	219636004	219636005	chr1:219636005:T:C	rs10863470	T	C	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	219676381	219676382	chr1:219676382:A:G	rs10746390	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr1	219994049	219994050	chr1:219994050:G:C	rs10779393	G	C	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr1	220067519	220067520	chr1:220067520:A:G	rs17563262	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.871322209877066	-1.5179592245008242	GATCAATCCTATTTATA
chr1	220067527	220067528	chr1:220067528:T:C	rs141984354	T	C	T	Sox3.mouse_HMG_2	13	1	+	4.871322209877066	4.871322209877066	GATCAATCCTATTTATA
chr1	220768093	220768094	chr1:220768094:C:T	rs139836771	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	220768101	220768102	chr1:220768102:G:A	rs11118598	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr1	220775362	220775363	chr1:220775363:A:G	rs74387823	A	G	a	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	220775373	220775374	chr1:220775374:A:G	rs17008649	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	220893760	220893761	chr1:220893761:T:G	rs2807863	T	G	G	Sox3.mouse_HMG_2	16	1	+	5.247179564930917	4.883457875296972	TTACAATGTTAGTGTAT
chr1	221188379	221188380	chr1:221188380:A:G	rs9431436	A	G	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr1	221336459	221336460	chr1:221336460:C:T	rs188270586	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	221439955	221439956	chr1:221439956:C:T	rs10863613	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	221439993	221439994	chr1:221439994:C:T	rs189174204	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr1	221713084	221713085	chr1:221713085:G:A	rs139504652	G	A	G	Sox3.mouse_HMG_2	1	1	+	11.254455950479368	13.260843892498826	GGTCAATGTCAGTGTTG
chr1	221713088	221713089	chr1:221713089:A:G	rs149306847	A	G	A	Sox3.mouse_HMG_2	5	1	+	11.254455950479368	4.8651745161014786	GGTCAATGTCAGTGTTG
chr1	221775526	221775527	chr1:221775527:T:C	rs12029988	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	221781279	221781280	chr1:221781280:A:G	rs11804936	A	G	A	Sox3.mouse_HMG_2	12	1	-	5.762280675151255	-0.2886864627795614	GGTCAAGTGTATTGAGG
chr1	221794522	221794523	chr1:221794523:A:G	rs4846725	A	G	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr1	221841554	221841555	chr1:221841555:A:G	rs11118873	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr1	221991094	221991095	chr1:221991095:A:G	rs61823903	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.2358074563830916	-4.448566743077245	TGACATTGGTATTGGTG
chr1	222026324	222026325	chr1:222026325:G:A	rs66732677	G	A	G	Sox3.mouse_HMG_2	7	1	+	4.217045831729167	-2.411775663358888	CATCCATGTTACTGATC
chr1	222371371	222371372	chr1:222371372:A:G	rs79403508	A	G	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr1	222377993	222377994	chr1:222377994:C:T	rs4639770	C	T	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr1	222415963	222415964	chr1:222415964:T:C	rs116124097	T	C	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr1	222548330	222548331	chr1:222548331:T:C	rs9441911	T	C	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	222554213	222554214	chr1:222554214:T:C	rs11485178	T	C	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	222588428	222588429	chr1:222588429:A:G	rs2270705	A	G	A	Sox3.mouse_HMG_2	10	1	+	6.930660261888301	0.021905482573079504	GCTCAATGTTATTATTT
chr1	222802456	222802457	chr1:222802457:A:C	rs79277912	A	C	A	Sox3.mouse_HMG_2	3	1	+	2.0312967000634967	8.931966939322406	GGTAAATGGCTTTGATG
chr1	222816417	222816418	chr1:222816418:T:C	rs61838109	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr1	222910780	222910781	chr1:222910781:G:T	rs72742237	G	T	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr1	223420182	223420183	chr1:223420183:G:A	rs1772288	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr1	223420186	223420187	chr1:223420187:G:A	rs1772289	G	A	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr1	223920958	223920959	chr1:223920959:A:C	rs4120683	A	C	-	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr1	224077514	224077515	chr1:224077515:T:C	rs7544572	T	C	T	Sox3.mouse_HMG_2	15	1	+	2.8527834128707625	-0.9270160046350332	TGTTAAGTGTATTGATG
chr1	224212472	224212473	chr1:224212473:A:G	rs6682292	A	G	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr1	224245362	224245363	chr1:224245363:C:G	rs112238875	C	G	C	Sox3.mouse_HMG_2	7	1	-	2.4338326956898486	-4.1949887993982085	CATGAATGTTTTTGTTT
chr1	224330440	224330441	chr1:224330441:T:C	rs4654023	T	C	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr1	224387315	224387316	chr1:224387316:C:T	rs17503938	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.5369067726897674	-3.5147317314965445	AATCAATGGTAAAGAAG
chr1	224544403	224544404	chr1:224544404:C:T	rs989755	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr1	224673248	224673249	chr1:224673249:C:A	rs6426145	C	A	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr1	224738036	224738037	chr1:224738037:C:T	rs7414300	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr1	224799117	224799118	chr1:224799118:C:T	rs2574875	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr1	224920643	224920644	chr1:224920644:G:A	rs12565019	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	225711165	225711166	chr1:225711166:T:C	rs12031529	T	C	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	225809367	225809368	chr1:225809368:G:A	rs10737420	G	A	G	Sox3.mouse_HMG_2	9	1	-	1.322535255136502	2.0151877980084616	GTTCAATGCCAGGGGAG
chr1	225846093	225846094	chr1:225846094:A:C	rs1054393	A	C	A	Sox3.mouse_HMG_2	5	1	+	0.5763028781293815	-6.331772349663675	GCTCAAGGGCAGTGGGA
chr1	225898437	225898438	chr1:225898438:G:T	rs7551003	G	T	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	225898445	225898446	chr1:225898446:G:T	rs2013363	G	T	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr1	226223247	226223248	chr1:226223248:G:C	rs10753416	G	C	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	226438872	226438873	chr1:226438873:C:T	rs7527596	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr1	226451944	226451945	chr1:226451945:C:T	rs1527366	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr1	226456421	226456422	chr1:226456422:C:T	rs148229195	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr1	226559627	226559628	chr1:226559628:G:A	rs6679966	G	A	g	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr1	226587214	226587215	chr1:226587215:G:A	rs12031880	G	A	G	Sox3.mouse_HMG_2	15	1	-	3.1957728890719017	6.975572306577697	AATTAATTTTAGTGGCG
chr1	226724494	226724495	chr1:226724495:C:A	rs3768411	C	A	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr1	226772673	226772674	chr1:226772674:C:T	rs77167946	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr1	226946759	226946760	chr1:226946760:T:A	rs79929620	T	A	T	Sox3.mouse_HMG_2	1	1	-	2.6370750920813952	-0.058148466971901305	CATCACTGGTATGGAAG
chr1	227320416	227320417	chr1:227320417:T:C	rs72632825	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	227563482	227563483	chr1:227563483:A:T	rs185015562	A	T	A	Sox3.mouse_HMG_2	8	1	-	3.1203188449760377	1.0878905272273292	CGTCAATGTCCCTGATT
chr1	227634238	227634239	chr1:227634239:C:G	rs10916182	C	G	-	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr1	228192017	228192018	chr1:228192018:A:G	rs79829758	A	G	A	Sox3.mouse_HMG_2	6	1	-	1.3633942252553801	-5.025887209122509	CGACACTGTCAGTGACT
chr1	228738040	228738041	chr1:228738041:A:C	rs2295255	A	C	A	Sox3.mouse_HMG_2	2	1	+	4.275514893657118	1.1902743629149108	AAAAAATTTCAGTGATG
chr1	228795041	228795042	chr1:228795042:A:G	rs1006589245	A	G	A	Sox3.mouse_HMG_2	5	1	+	1.9792972268339104	-4.409984207543978	TGTCAAAGGCAATGATA
chr1	228851317	228851318	chr1:228851318:T:C	rs1493085	T	C	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr1	228958350	228958351	chr1:228958351:A:C	rs16849250	A	C	.	Sox3.mouse_HMG_2	6	1	-	1.3946149157359244	-5.513460312057132	GCTGACTGTCAGTGATA
chr1	229029740	229029741	chr1:229029741:C:A	rs484947	C	A	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	229172103	229172104	chr1:229172104:T:G	rs530525253	T	G	T	Sox3.mouse_HMG_2	15	1	-	3.609741036385886	2.133331312338775	GAACAATGGCAGTGCAC
chr1	229318341	229318342	chr1:229318342:G:A	rs530898406	G	A	G	Sox3.mouse_HMG_2	15	1	-	3.4969157745763444	7.276715192082141	CAACAATTTGAGTGACG
chr1	229472418	229472419	chr1:229472419:G:A	rs4925489	G	A	g	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr1	229696828	229696829	chr1:229696829:T:C	rs192634580	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.030906028762598	-2.35837540561529	TATCAATGGCAGTCTTC
chr1	230066557	230066558	chr1:230066558:A:G	chr1:230066558:A:G	A	G	A	Sox3.mouse_HMG_2	0	1	-	3.421927557578104	3.9070625718322125	TATCGATTTTATTTATC
chr1	230102759	230102760	chr1:230102760:A:G	rs1998067	A	G	A	Sox3.mouse_HMG_2	6	1	-	2.1667509381266283	-4.2225304962512595	CATCAATGGCTATGAAA
chr1	230136823	230136824	chr1:230136824:A:G	rs139910054	A	G	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr1	230267179	230267180	chr1:230267180:G:A	rs9432145	G	A	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr1	230303234	230303235	chr1:230303235:A:T	rs542400734	A	T	A	Sox3.mouse_HMG_2	15	1	-	1.2471084845697111	-1.0562812088889735	CCTCAAAGGAAGTGATG
chr1	230572115	230572116	chr1:230572116:G:T	rs80114319	G	T	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr1	230578745	230578746	chr1:230578746:G:T	rs12072041	G	T	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	230750624	230750625	chr1:230750625:G:A	rs1887208	G	A	G	Sox3.mouse_HMG_2	13	1	+	1.8612196831038899	-4.190418821082422	CATCATTTGCAGTGGGA
chr1	230820457	230820458	chr1:230820458:C:T	rs1202530	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr1	230826601	230826602	chr1:230826602:G:A	rs16852759	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr1	230875445	230875446	chr1:230875446:T:C	rs41305721	T	C	C	Sox3.mouse_HMG_2	16	1	-	4.935003998918347	5.146578425403598	ACTCAAAGGCAGTGATA
chr1	231018347	231018348	chr1:231018348:A:G	rs73110142	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr1	231337949	231337950	chr1:231337950:A:G	rs111398285	A	G	A	Sox3.mouse_HMG_2	10	1	+	2.9425057252330737	-3.966249054082146	CAGCAATGCCATCGGTT
chr1	231387977	231387978	chr1:231387978:G:C	rs2790887	G	C	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	231388010	231388011	chr1:231388011:G:A	rs2808592	G	A	A	Sox3.mouse_HMG_2	3	1	-	8.408327830218546	3.5514719549963223	ATACAATGATATTGATC
chr1	231463672	231463673	chr1:231463673:G:A	rs1339890	G	A	G	Sox3.mouse_HMG_2	10	1	+	2.5073835344763675	9.416138313791588	GATGAATGCCGTTGAAT
chr1	231733686	231733687	chr1:231733687:G:A	rs56150927	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr1	231846524	231846525	chr1:231846525:G:A	rs11588799	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr1	232429349	232429350	chr1:232429350:C:T	rs116118731	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	232501341	232501342	chr1:232501342:C:T	rs7534024	C	T	T	Sox3.mouse_HMG_2	0	1	-	3.4932024649529008	1.7967101712502378	GCACAATGTTTTTGGTT
chr1	232502212	232502213	chr1:232502213:T:C	rs6691122	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr1	232555959	232555960	chr1:232555960:G:A	rs140725963	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr1	232621310	232621311	chr1:232621311:T:G	rs147836436	T	G	T	Sox3.mouse_HMG_2	9	1	+	3.692770661075159	-2.2912105988091604	TTTCAGTGATAGTGAGT
chr1	232804936	232804937	chr1:232804937:C:G	rs12092514	C	G	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr1	232804972	232804973	chr1:232804973:T:A	rs370198547	T	A	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	232805197	232805198	chr1:232805198:T:C	rs142492595	T	C	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr1	232805206	232805207	chr1:232805207:T:C	rs10797593	T	C	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr1	232805227	232805228	chr1:232805228:G:A	rs201625156	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	233459343	233459344	chr1:233459344:C:T	rs6424196	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr1	233582020	233582021	chr1:233582021:C:T	rs17207473	C	T	c	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr1	233721175	233721176	chr1:233721176:C:G	rs9424538	C	G	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr1	233791937	233791938	chr1:233791938:C:T	rs61455181	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr1	233791974	233791975	chr1:233791975:A:G	rs16859591	A	G	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr1	233959587	233959588	chr1:233959588:T:C	rs4920187	T	C	T	Sox3.mouse_HMG_2	6	1	+	1.8006854051867471	-4.588596029191143	CATGAATGTCAGTCAGG
chr1	234062475	234062476	chr1:234062476:G:A	rs9435500	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr1	234317061	234317062	chr1:234317062:T:A	rs61824466	T	A	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr1	234428456	234428457	chr1:234428457:C:T	rs10797547	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	234428458	234428459	chr1:234428459:G:C	rs10797548	G	C	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr1	234517498	234517499	chr1:234517499:C:T	rs6668373	C	T	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	234606378	234606379	chr1:234606379:T:C	rs918895178	T	C	T	Sox3.mouse_HMG_2	0	1	-	7.22653960770706	8.923031901409724	ATACAATTCCAGTGATG
chr1	234776923	234776924	chr1:234776924:G:T	chr1:234776924:G:T	G	T	G	Sox3.mouse_HMG_2	8	1	+	6.915573846153855	7.729211779158067	TTTCAATTGCACTGATT
chr1	234817837	234817838	chr1:234817838:T:A	rs536357198	T	A	t	Sox3.mouse_HMG_2	11	1	+	3.5780096227898914	-2.3739966829572174	AGTCAGTTTTATTGGTC
chr1	234917961	234917962	chr1:234917962:T:C	rs16844196	T	C	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr1	234917989	234917990	chr1:234917990:C:T	rs61837267	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr1	234943778	234943779	chr1:234943779:G:A	rs10910529	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr1	234998027	234998028	chr1:234998028:C:G	chr1:234998028:C:G	C	G	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr1	235048315	235048316	chr1:235048316:C:T	chr1:235048316:C:T	C	T	C	Sox3.mouse_HMG_2	9	1	-	2.399914924242529	2.399914924242529	CGTCAATGCGAGTCATT
chr1	235057704	235057705	chr1:235057705:A:G	rs900793485	A	G	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	235298048	235298049	chr1:235298049:C:T	rs11581782	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr1	235417066	235417067	chr1:235417067:A:G	rs2153204	A	G	g	Sox3.mouse_HMG_2	15	1	-	3.072266642076882	-0.7075327754289139	GCTGGATTTTATTGATG
chr1	235913393	235913394	chr1:235913394:A:T	rs10927030	A	T	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr1	235919413	235919414	chr1:235919414:T:C	rs556626722	T	C	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr1	236222832	236222833	chr1:236222833:T:C	rs1612244	T	C	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr1	236334937	236334938	chr1:236334938:C:T	rs12022946	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr1	236415100	236415101	chr1:236415101:C:A	rs662509	C	A	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr1	236472040	236472041	chr1:236472041:A:G	rs11587227	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.597034042043737	-2.0873401574165986	CATTAATGTCATTTAAA
chr1	236483390	236483391	chr1:236483391:T:C	rs879121648	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr1	236552541	236552542	chr1:236552542:A:G	rs1042310	A	G	G	Sox3.mouse_HMG_2	6	1	-	3.823119529214378	-2.5661619051635127	ATACAATTATAGTGGTG
chr1	236660094	236660095	chr1:236660095:T:G	rs77940542	T	G	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	236660120	236660121	chr1:236660121:G:A	rs663798	G	A	A	Sox3.mouse_HMG_2	11	1	+	3.2480497806241577	-1.323434347709127	GTACAATGACAGGGATT
chr1	236660127	236660128	chr1:236660128:C:T	rs79695606	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr1	236740490	236740491	chr1:236740491:C:T	rs2385494	C	T	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr1	236747836	236747837	chr1:236747837:A:G	rs10925211	A	G	A	Sox3.mouse_HMG_2	4	1	+	3.911656332740054	-2.4776251016378357	AATCACTGGTATTCATT
chr1	236905370	236905371	chr1:236905371:A:T	rs78629683	A	T	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr1	236905723	236905724	chr1:236905724:G:A	rs144767736	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr1	237109619	237109620	chr1:237109620:C:T	rs17669728	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	237310175	237310176	chr1:237310176:G:C	rs11582513	G	C	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr1	237391152	237391153	chr1:237391153:G:A	rs12082285	G	A	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr1	238255677	238255678	chr1:238255678:G:A	rs2893632	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr1	238255696	238255697	chr1:238255697:T:C	rs75705169	T	C	T	Sox3.mouse_HMG_2	2	1	+	4.142253750486966	-2.224643556038777	GATGAATGCCAGTGGAA
chr1	238371098	238371099	chr1:238371099:G:C	rs75352561	G	C	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr1	238475811	238475812	chr1:238475812:T:C	rs10733121	T	C	C	Sox3.mouse_HMG_2	12	1	+	4.58976285890161	-1.4612042790292064	GATAAATGGTAGTGCTT
chr1	238492530	238492531	chr1:238492531:A:G	rs2004637	A	G	G	Sox3.mouse_HMG_2	10	1	+	3.040347365407377	-3.868407413907842	CTTCAATCTTACTGATG
chr1	238501469	238501470	chr1:238501470:G:A	rs10802697	G	A	g	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr1	239213160	239213161	chr1:239213161:A:G	rs539626261	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.7371756182362246	-3.9471985812241086	GAAAAATGGAATTGATT
chr1	239795367	239795368	chr1:239795368:C:T	rs619288	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr1	239900065	239900066	chr1:239900066:T:C	rs16839051	T	C	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr1	240100251	240100252	chr1:240100252:C:G	rs11589947	C	G	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	240199940	240199941	chr1:240199941:C:G	rs1456661	C	G	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr1	240290327	240290328	chr1:240290328:G:A	rs10754697	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr1	240310268	240310269	chr1:240310269:T:C	rs6697484	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr1	240327415	240327416	chr1:240327416:A:G	rs10495464	A	G	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	240362897	240362898	chr1:240362898:C:G	rs146766110	C	G	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	240455414	240455415	chr1:240455415:A:G	rs983962055	A	G	A	Sox3.mouse_HMG_2	14	1	-	4.53235871565256	2.51921162181256	TCTCAATTGTAGTGTGC
chr1	240516338	240516339	chr1:240516339:T:C	rs12143396	T	C	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr1	240516369	240516370	chr1:240516370:T:C	rs12143400	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	240527130	240527131	chr1:240527131:C:T	rs12034261	C	T	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr1	240539759	240539760	chr1:240539760:C:T	rs80285190	C	T	C	Sox3.mouse_HMG_2	3	1	+	4.665322749583298	-0.19153312563892205	CTGCAATGTTATTGTAA
chr1	240608979	240608980	chr1:240608980:C:T	rs188152073	C	T	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr1	240608995	240608996	chr1:240608996:G:A	rs142931648	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr1	241176953	241176954	chr1:241176954:A:C	rs112075961	A	C	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr1	241349475	241349476	chr1:241349476:G:A	rs34491653	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr1	241558328	241558329	chr1:241558329:G:A	rs12092480	G	A	G	Sox3.mouse_HMG_2	0	1	-	4.151556360129084	3.666421345874977	CGTTCATTTTATTGATG
chr1	241605662	241605663	chr1:241605663:C:A	rs6429282	C	A	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr1	241762933	241762934	chr1:241762934:T:C	rs11587279	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr1	241807101	241807102	chr1:241807102:A:G	rs147734105	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	241807113	241807114	chr1:241807114:T:C	rs7546918	T	C	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr1	241842041	241842042	chr1:241842042:G:T	rs17391502	G	T	G	Sox3.mouse_HMG_2	13	1	+	2.571971794450088	-3.815288244477124	TGTCTATTTCATTGTTC
chr1	241950701	241950702	chr1:241950702:G:A	rs28413917	G	A	A	Sox3.mouse_HMG_2	1	1	-	3.4589131331007263	3.479131110391371	GCTTAATGCTAGCGATT
chr1	241979533	241979534	chr1:241979534:C:T	rs112832098	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr1	242242543	242242544	chr1:242242544:G:A	rs383373	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr1	242435549	242435550	chr1:242435550:T:C	rs1503795	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr1	243324883	243324884	chr1:243324884:C:G	rs10158537	C	G	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr1	243939512	243939513	chr1:243939513:C:G	rs148557837	C	G	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr1	244294439	244294440	chr1:244294440:C:T	rs80311739	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr1	244325426	244325427	chr1:244325427:T:C	rs74982651	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr1	244327519	244327520	chr1:244327520:T:G	rs35045024	T	G	T	Sox3.mouse_HMG_2	8	1	+	4.8250948643555365	4.011456931351324	ACTCAATGTCCTTGAAA
chr1	244340417	244340418	chr1:244340418:C:G	rs533108	C	G	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr1	244347134	244347135	chr1:244347135:G:A	rs900895	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr1	244360201	244360202	chr1:244360202:A:G	rs10927210	A	G	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr1	244447747	244447748	chr1:244447748:C:T	rs182063209	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	244838499	244838500	chr1:244838500:A:G	rs78655555	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.150415217200354	-3.533958982259982	TTTCTATTTCATTGACA
chr1	244840248	244840249	chr1:244840249:G:C	rs10927334	G	C	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr1	244893510	244893511	chr1:244893511:A:G	rs75575377	A	G	A	Sox3.mouse_HMG_2	8	1	+	2.1348926575702505	3.3536830423147475	TGTAAATGACAGTGACT
chr1	244972255	244972256	chr1:244972256:T:A	rs115166951	T	A	T	Sox3.mouse_HMG_2	0	1	-	3.3569951757799816	4.263718937704348	ACATAATGGCATTGAAT
chr1	245042864	245042865	chr1:245042865:T:G	rs73138977	T	G	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr1	245044134	245044135	chr1:245044135:T:C	rs1572554	T	C	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr1	245277948	245277949	chr1:245277949:G:A	rs9660396	G	A	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr1	245449481	245449482	chr1:245449482:A:G	rs2298106	A	G	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr1	245679001	245679002	chr1:245679002:T:C	rs67364568	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr1	245785446	245785447	chr1:245785447:T:C	rs60357579	T	C	t	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr1	245873941	245873942	chr1:245873942:A:T	rs9287190	A	T	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr1	245957212	245957213	chr1:245957213:G:A	rs10924403	G	A	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr1	246002016	246002017	chr1:246002017:C:G	rs148335745	C	G	C	Sox3.mouse_HMG_2	11	1	-	2.650107871624539	-2.6537441504219728	CTGCAATTACAGTGGTG
chr1	246034299	246034300	chr1:246034300:C:T	rs10924456	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr1	246232190	246232191	chr1:246232191:G:A	rs114684782	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr1	246297949	246297950	chr1:246297950:G:A	rs12039645	G	A	G	Sox3.mouse_HMG_2	16	1	+	3.8030863172825433	3.591511890797293	TGCCAATGTTATTTATG
chr1	246446053	246446054	chr1:246446054:T:C	rs1890162	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr1	246552344	246552345	chr1:246552345:A:G	rs10465617	A	G	a	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr1	246796807	246796808	chr1:246796808:C:T	rs71638369	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr1	247163834	247163835	chr1:247163835:T:C	rs4925766	T	C	N	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr1	248889006	248889007	chr1:248889007:A:G	rs12752429	A	G	G	Sox3.mouse_HMG_2	14	1	-	5.157434870659857	3.1442877768198576	CATCAAAGCCAGTGTTT
chr10	106109	106110	chr10:106110:C:G	rs9286071	C	G	G	Sox3.mouse_HMG_2	2	1	-	2.0231331653953504	0.810110525549496	CTGCAAATGCATTGATT
chr10	493366	493367	chr10:493367:A:C	rs76338795	A	C	A	Sox3.mouse_HMG_2	8	1	-	4.744636237571381	3.9309983045671686	AATCAATGTCATGGGAA
chr10	718845	718846	chr10:718846:G:T	rs11253340	G	T	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr10	722784	722785	chr10:722785:G:A	rs55818232	G	A	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr10	787537	787538	chr10:787538:G:A	rs74578197	G	A	g	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr10	873091	873092	chr10:873092:G:C	rs34885925	G	C	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr10	1020656	1020657	chr10:1020657:T:C	rs116453469	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr10	1020694	1020695	chr10:1020695:A:G	rs917674193	A	G	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr10	1099241	1099242	chr10:1099242:A:G	rs17155886	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr10	1142788	1142789	chr10:1142789:C:A	chr10:1142789:C:A	C	A	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr10	1156704	1156705	chr10:1156705:G:A	rs749747255	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr10	1181656	1181657	chr10:1181657:A:G	rs10794729	A	G	G	Sox3.mouse_HMG_2	4	1	+	2.949660261729919	-3.439621172647971	GCACAATGTTATTCTTG
chr10	1181744	1181745	chr10:1181745:G:A	rs10903398	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr10	1290572	1290573	chr10:1290573:A:G	rs4880811	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.3021127217653463	-4.087168712612542	CCACAATGTTAGAGGTG
chr10	1293653	1293654	chr10:1293654:A:G	rs1027604	A	G	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr10	1623015	1623016	chr10:1623016:C:T	rs10082419	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr10	1754699	1754700	chr10:1754700:G:C	rs191539354	G	C	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr10	1754700	1754701	chr10:1754701:C:T	rs183798758	C	T	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr10	1754716	1754717	chr10:1754717:A:G	rs916295334	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr10	2014214	2014215	chr10:2014215:C:G	rs7086568	C	G	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr10	2227738	2227739	chr10:2227739:C:T	rs7919624	C	T	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr10	2367190	2367191	chr10:2367191:A:G	rs17158213	A	G	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr10	2384664	2384665	chr10:2384665:C:T	rs826497	C	T	c	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr10	2495489	2495490	chr10:2495490:G:A	rs61835717	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr10	2632265	2632266	chr10:2632266:C:T	rs6601818	C	T	C	Sox3.mouse_HMG_2	0	1	+	6.370902602397662	5.885767588143553	CATCAATGCTAGTTTTT
chr10	2658988	2658989	chr10:2658989:G:A	rs1413759	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	2681300	2681301	chr10:2681301:G:A	rs17182743	G	A	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr10	2819859	2819860	chr10:2819860:A:G	rs7906621	A	G	A	Sox3.mouse_HMG_2	16	1	-	2.878285558942332	1.275292509281881	GATCAATTTCACTGCAT
chr10	2923672	2923673	chr10:2923673:C:A	rs7098080	C	A	A	Sox3.mouse_HMG_2	8	1	+	1.9770932382755153	1.1990868866824749	GGACAATGCCAGTCAGT
chr10	3081240	3081241	chr10:3081241:T:C	rs882849	T	C	t	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr10	3412060	3412061	chr10:3412061:G:C	rs60745586	G	C	G	Sox3.mouse_HMG_2	1	1	+	4.018532569175563	3.3094789748510807	GGTGAATGCTATTTATT
chr10	3776854	3776855	chr10:3776855:G:A	rs114433167	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr10	3811272	3811273	chr10:3811273:A:G	chr10:3811273:A:G	A	G	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr10	3849383	3849384	chr10:3849384:G:T	rs56784053	G	T	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr10	3890338	3890339	chr10:3890339:A:G	rs17251434	A	G	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr10	3948474	3948475	chr10:3948475:T:A	rs76343333	T	A	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr10	3978363	3978364	chr10:3978364:T:A	rs76682609	T	A	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr10	4310505	4310506	chr10:4310506:G:T	rs10904225	G	T	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr10	4412272	4412273	chr10:4412273:G:T	rs1751306	G	T	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr10	4480382	4480383	chr10:4480383:A:G	rs77168358	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr10	4486760	4486761	chr10:4486761:G:T	rs1079113	G	T	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr10	4658775	4658776	chr10:4658776:A:G	rs10508287	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr10	4770961	4770962	chr10:4770962:A:G	rs11818567	A	G	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr10	4816135	4816136	chr10:4816136:T:C	rs12769532	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr10	4816138	4816139	chr10:4816139:A:G	rs146281443	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr10	4848975	4848976	chr10:4848976:C:T	rs1993181	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr10	4934617	4934618	chr10:4934618:C:A	rs12253332	C	A	C	Sox3.mouse_HMG_2	3	1	+	2.6507696903627673	-4.249900548896139	CTTCATTTTTATTGCTT
chr10	5009339	5009340	chr10:5009340:G:A	rs1937863	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr10	5009378	5009379	chr10:5009379:C:A	rs113767262	C	A	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr10	5081314	5081315	chr10:5081315:T:G	rs6601901	T	G	T	Sox3.mouse_HMG_2	8	1	+	7.810233325188106	6.9965953921838935	ATTCAGTTTTATTGATT
chr10	5090953	5090954	chr10:5090954:C:T	rs11252933	C	T	C	Sox3.mouse_HMG_2	1	1	-	3.194101456238287	5.200489398257747	AGTCAATGCCAATGGTC
chr10	5096179	5096180	chr10:5096180:T:G	rs2801882	T	G	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr10	5116847	5116848	chr10:5116848:A:T	rs1892405	A	T	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr10	5116850	5116851	chr10:5116851:C:T	rs1892404	C	T	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr10	5291182	5291183	chr10:5291183:G:C	rs12771527	G	C	g	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr10	5355924	5355925	chr10:5355925:T:C	rs9423610	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.7155351299772925	-3.673746304400597	GTTCAATGTTAACGAAT
chr10	5443305	5443306	chr10:5443306:T:C	rs10904504	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.987419845762447	-1.4018615886154433	TCTCAATTTTAGAGAAG
chr10	5447222	5447223	chr10:5447223:G:T	rs60426135	G	T	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr10	5501382	5501383	chr10:5501383:T:C	rs12412562	T	C	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr10	5588167	5588168	chr10:5588168:T:C	rs4075309	T	C	C	Sox3.mouse_HMG_2	16	1	-	2.972168765209151	3.1837431916944015	TCACAATGCCAGTGGGA
chr10	5853397	5853398	chr10:5853398:G:A	rs11255555	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr10	5973233	5973234	chr10:5973234:T:C	rs8177654	T	C	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr10	6330758	6330759	chr10:6330759:G:A	rs567082605	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr10	6491914	6491915	chr10:6491915:A:G	rs3815975	A	G	A	Sox3.mouse_HMG_2	12	1	-	4.676553010146961	-1.3744141277838553	ACACAATGCCAGTGTTT
chr10	6491937	6491938	chr10:6491938:C:T	rs3815974	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr10	6669228	6669229	chr10:6669229:C:G	rs11813112	C	G	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr10	6728717	6728718	chr10:6728718:G:A	rs353183	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr10	6766744	6766745	chr10:6766745:G:C	chr10:6766745:G:C	G	C	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr10	6766750	6766751	chr10:6766751:G:A	rs4747303	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	6986760	6986761	chr10:6986761:C:T	rs882778	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr10	7074485	7074486	chr10:7074486:C:T	rs9424004	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr10	7090962	7090963	chr10:7090963:G:A	rs1192347530	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr10	7345860	7345861	chr10:7345861:C:T	rs61837686	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr10	7442376	7442377	chr10:7442377:C:G	rs12245350	C	G	C	Sox3.mouse_HMG_2	12	1	-	2.842424505323483	3.178046040064382	GAACAATGACAGGGAGG
chr10	7494344	7494345	chr10:7494345:C:T	rs2388139	C	T	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr10	7542096	7542097	chr10:7542097:G:T	rs571338224	G	T	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr10	7686803	7686804	chr10:7686804:C:T	rs72781022	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr10	7782251	7782252	chr10:7782252:A:G	rs10905231	A	G	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr10	8086347	8086348	chr10:8086348:T:A	rs794659	T	A	T	Sox3.mouse_HMG_2	6	1	+	4.458430585105135	-2.4496446426879217	TCACAATGGTATTGGGC
chr10	8367474	8367475	chr10:8367475:A:G	rs149110969	A	G	a	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr10	8420475	8420476	chr10:8420476:T:C	rs2993385	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr10	8677848	8677849	chr10:8677849:C:T	rs11255824	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr10	8689291	8689292	chr10:8689292:C:T	rs7912831	C	T	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr10	8702057	8702058	chr10:8702058:A:G	rs10905453	A	G	G	Sox3.mouse_HMG_2	16	1	-	4.631831594756912	3.0288385450964617	AAACATTTTCAGTGATT
chr10	9026688	9026689	chr10:9026689:G:C	rs1149912	G	C	C	Sox3.mouse_HMG_2	3	1	-	2.9789856049018884	-3.0715337049874076	AGTCAATGACAGAGAAA
chr10	9038062	9038063	chr10:9038063:G:C	rs1891532	G	C	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr10	9066354	9066355	chr10:9066355:T:C	rs10795689	T	C	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr10	9110741	9110742	chr10:9110742:T:C	rs17364530	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.221803673543211	-3.1674777608346787	TGACAATGGCATTGCAA
chr10	9188550	9188551	chr10:9188551:A:G	rs7094402	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.543854712068972	-1.8454267223089167	TGTCAATTCTACTGAGA
chr10	9628037	9628038	chr10:9628038:A:G	rs1338724	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr10	9862006	9862007	chr10:9862007:C:G	rs17146593	C	G	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr10	9901879	9901880	chr10:9901880:A:G	rs4749906	A	G	A	Sox3.mouse_HMG_2	15	1	-	5.1572152078813955	1.3774157903756004	TATTAATTACAGTGGTG
chr10	10045344	10045345	chr10:10045345:G:T	rs79249198	G	T	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr10	10094202	10094203	chr10:10094203:C:T	rs12264789	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr10	10096205	10096206	chr10:10096206:T:C	rs11256490	T	C	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr10	10402312	10402313	chr10:10402313:A:G	rs1891399	A	G	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr10	10680694	10680695	chr10:10680695:C:T	rs1359888	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr10	10794120	10794121	chr10:10794121:C:T	rs11592096	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr10	10887491	10887492	chr10:10887492:G:A	rs78716408	G	A	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr10	11146236	11146237	chr10:11146237:T:C	rs78465598	T	C	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr10	11157307	11157308	chr10:11157308:G:A	rs73575699	G	A	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr10	11190615	11190616	chr10:11190616:T:A	rs622981	T	A	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr10	11202636	11202637	chr10:11202637:G:A	rs752379	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr10	11203141	11203142	chr10:11203142:T:C	rs939410347	T	C	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr10	11397902	11397903	chr10:11397903:T:C	rs3847432	T	C	T	Sox3.mouse_HMG_2	4	1	-	3.3731358385766335	-3.016145595801257	AGTCAAGTGCATTGAGG
chr10	11527824	11527825	chr10:11527825:C:T	rs11257153	C	T	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr10	11818333	11818334	chr10:11818334:T:C	rs58829444	T	C	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr10	11829702	11829703	chr10:11829703:C:T	rs1268582735	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr10	12018994	12018995	chr10:12018995:A:C	rs1722442	A	C	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr10	12057023	12057024	chr10:12057024:A:G	rs11257506	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	12057051	12057052	chr10:12057052:A:C	rs12766968	A	C	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr10	12113558	12113559	chr10:12113559:A:G	rs193273294	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.362318516680248	-0.026962917697641656	TGTCAATTGTAATGAAG
chr10	12203601	12203602	chr10:12203602:A:G	rs938991	A	G	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr10	12241932	12241933	chr10:12241933:A:C	rs11257612	A	C	G	Sox3.mouse_HMG_2	12	1	-	2.380986195373683	-4.005602477298033	TATCAACTCTAGTGCTG
chr10	12347180	12347181	chr10:12347181:C:T	rs2997063	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr10	12366247	12366248	chr10:12366248:C:A	rs77561060	C	A	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr10	12498800	12498801	chr10:12498801:C:T	rs11257832	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr10	12799890	12799891	chr10:12799891:C:T	rs55896748	C	T	C	Sox3.mouse_HMG_2	3	1	+	3.7537843346501156	-1.1030715405721072	GTTCAATTTCAGTCGTG
chr10	12827000	12827001	chr10:12827001:A:G	rs1644392	A	G	A	Sox3.mouse_HMG_2	14	1	+	3.4923796314910107	0.1743133617194092	TATCAAGGCTTTTGATG
chr10	12888183	12888184	chr10:12888184:G:A	rs33978631	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr10	13062872	13062873	chr10:13062873:A:G	rs12261949	A	G	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr10	13062887	13062888	chr10:13062888:G:A	rs12268703	G	A	G	Sox3.mouse_HMG_2	16	1	-	4.926287668188555	6.529280717849005	GAGCAAGTTTATTGATC
chr10	13233509	13233510	chr10:13233510:C:G	rs7893239	C	G	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr10	13241806	13241807	chr10:13241807:A:G	rs17152990	A	G	A	Sox3.mouse_HMG_2	5	1	+	8.353218683203941	1.9639372488260518	TGACAATGGCATTGACT
chr10	13260169	13260170	chr10:13260170:C:T	rs78150227	C	T	-	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr10	13789246	13789247	chr10:13789247:T:C	rs557861587	T	C	T	Sox3.mouse_HMG_2	11	1	+	3.1594612024220865	-3.524912997038249	CATCATTGTTATTGCGA
chr10	13830628	13830629	chr10:13830629:T:C	rs80207127	T	C	C	Sox3.mouse_HMG_2	5	1	+	2.7363525220498026	2.7363525220498026	CAGCATTGCCATTGAAG
chr10	13830659	13830660	chr10:13830660:C:T	rs116097186	C	T	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr10	13908780	13908781	chr10:13908781:C:T	rs2698132	C	T	C	Sox3.mouse_HMG_2	2	1	-	3.2529984039543534	5.125216294850707	TGGCAATGCTACTGATA
chr10	13925532	13925533	chr10:13925533:G:A	rs1406467	G	A	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr10	13963987	13963988	chr10:13963988:C:A	rs750741	C	A	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr10	14008770	14008771	chr10:14008771:A:C	rs2292367	A	C	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr10	14017438	14017439	chr10:14017439:G:A	rs73591211	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr10	14047451	14047452	chr10:14047452:T:C	rs12250709	T	C	T	Sox3.mouse_HMG_2	12	1	+	2.9180871077917137	-3.132880030139103	CATCATTTTCAGTCATT
chr10	14078393	14078394	chr10:14078394:C:T	rs12243426	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr10	14137711	14137712	chr10:14137712:C:A	rs56371922	C	A	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr10	14174412	14174413	chr10:14174413:T:A	rs6602710	T	A	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr10	14174414	14174415	chr10:14174415:A:C	rs2139917	A	C	g	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr10	14409500	14409501	chr10:14409501:T:C	rs10906669	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.5712922429279232	-3.8179891914499655	TGTCAATTTCTTTGTTC
chr10	14546601	14546602	chr10:14546602:T:G	rs7079377	T	G	G	Sox3.mouse_HMG_2	14	1	-	3.8206758572516786	-2.2118527603369667	GCTCAATGGTAATAATG
chr10	14648094	14648095	chr10:14648095:A:G	rs36025028	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.3957844311858927	-3.2885897682744427	GATCATTTTAATTGAAT
chr10	14651949	14651950	chr10:14651950:C:T	rs7080083	C	T	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr10	14684505	14684506	chr10:14684506:G:A	rs114562619	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr10	14995671	14995672	chr10:14995672:G:T	rs4333919	G	T	-	Sox3.mouse_HMG_2	7	1	+	4.278339624275971	3.1524484104307264	CCCCAATGATATTGTTT
chr10	15149147	15149148	chr10:15149148:C:T	rs61844188	C	T	T	Sox3.mouse_HMG_2	0	1	-	10.06137433883782	8.364882045135158	GATCAATGGTAGTGGCG
chr10	15324806	15324807	chr10:15324807:T:A	rs374976522	T	A	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr10	15690381	15690382	chr10:15690382:C:T	rs12257212	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr10	15787234	15787235	chr10:15787235:C:T	rs114604854	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr10	15789755	15789756	chr10:15789756:C:T	rs7923731	C	T	T	Sox3.mouse_HMG_2	9	1	+	3.140067785949115	3.8327203288210745	AAGGAATGTCAGTGATC
chr10	15850682	15850683	chr10:15850683:G:T	rs111580233	G	T	T	Sox3.mouse_HMG_2	0	1	-	4.07620181315945	2.6843430369809753	CGGCATTGTCATTGATA
chr10	16466179	16466180	chr10:16466180:C:G	rs6602120	C	G	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr10	16479007	16479008	chr10:16479008:T:G	rs7905643	T	G	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	16843372	16843373	chr10:16843373:A:T	rs11254241	A	T	A	Sox3.mouse_HMG_2	15	1	-	4.5843751354436035	2.280985441984919	GAATAATGTCAGTGGTC
chr10	16962559	16962560	chr10:16962560:G:T	rs1687714	G	T	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr10	16969263	16969264	chr10:16969264:T:C	rs11593686	T	C	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr10	16969298	16969299	chr10:16969299:C:T	rs1828624	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr10	16999759	16999760	chr10:16999760:T:C	rs7921270	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr10	16999956	16999957	chr10:16999957:T:C	rs147612925	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.929424526134953	-2.4598569082429376	CGTCCATGGCAGTGGTG
chr10	17001817	17001818	chr10:17001818:T:G	rs3847368	T	G	T	Sox3.mouse_HMG_2	8	1	+	4.827700964937554	4.014063031933342	CTTCAATTTCATTATTT
chr10	17059498	17059499	chr10:17059499:C:A	rs151235084	C	A	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr10	17138675	17138676	chr10:17138676:A:C	rs7096079	A	C	C	Sox3.mouse_HMG_2	8	1	-	3.379453190329591	2.565815257325378	TTTAAATGTTAATGATT
chr10	17255555	17255556	chr10:17255556:C:T	rs10795467	C	T	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr10	17474766	17474767	chr10:17474767:C:A	rs7086483	C	A	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr10	17498410	17498411	chr10:17498411:A:C	rs1753370	A	C	C	Sox3.mouse_HMG_2	6	1	-	3.181226926681934	-3.726848301111121	CACCAATTCTCTTGATA
chr10	17646185	17646186	chr10:17646186:G:C	chr10:17646186:G:C	G	C	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr10	17673462	17673463	chr10:17673463:C:T	rs116343068	C	T	C	Sox3.mouse_HMG_2	1	1	+	2.933052529581934	2.9532705068725784	TCGCAATGACAGTGTTT
chr10	17758946	17758947	chr10:17758947:C:A	rs2461170	C	A	A	Sox3.mouse_HMG_2	3	1	+	2.0782716446819696	-4.822398594576936	CCTCCATGCCAGTGTTG
chr10	17817602	17817603	chr10:17817603:T:C	rs937446736	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr10	18060297	18060298	chr10:18060298:T:G	rs80269453	T	G	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr10	18100926	18100927	chr10:18100927:G:C	rs16916853	G	C	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr10	18230004	18230005	chr10:18230005:C:T	rs11013093	C	T	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr10	18387557	18387558	chr10:18387558:T:A	rs7074429	T	A	A	Sox3.mouse_HMG_2	6	1	+	3.479441052229971	-3.4286341755630847	CATCATTTCCAATGATT
chr10	18401738	18401739	chr10:18401739:A:G	rs3829133	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.539053431606817	-1.8502280027710714	CAACTATTCTATTGAAT
chr10	18500794	18500795	chr10:18500795:T:G	rs4485000	T	G	T	Sox3.mouse_HMG_2	10	1	+	3.2120971146424955	3.2120971146424955	TTTTAATGCTTTTGATT
chr10	18607888	18607889	chr10:18607889:C:G	chr10:18607889:C:G	C	G	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr10	18761142	18761143	chr10:18761143:C:G	rs10763631	C	G	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr10	19188659	19188660	chr10:19188660:A:G	rs72792611	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr10	19660302	19660303	chr10:19660303:A:T	rs1326978	A	T	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr10	19988153	19988154	chr10:19988154:C:T	rs4311960	C	T	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr10	20175974	20175975	chr10:20175975:G:A	rs11593311	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr10	20193300	20193301	chr10:20193301:G:C	rs11011853	G	C	G	Sox3.mouse_HMG_2	13	1	+	6.798092143962851	0.41083210503563955	TAACAAATGTATTGATT
chr10	20494783	20494784	chr10:20494784:G:A	rs10828064	G	A	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr10	20987473	20987474	chr10:20987474:T:C	rs7893616	T	C	C	Sox3.mouse_HMG_2	6	1	+	2.5690383014056186	-3.8202431329722724	CCTCAATGTCACTTATG
chr10	21340744	21340745	chr10:21340745:G:T	rs12252792	G	T	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr10	22133451	22133452	chr10:22133452:A:G	rs11817601	A	G	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr10	22133455	22133456	chr10:22133456:G:A	rs116750179	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr10	22158640	22158641	chr10:22158641:G:A	rs11593347	G	A	g	Sox3.mouse_HMG_2	1	1	-	4.73877356596088	4.7589915432515255	GCACAAGGTCAGTGATT
chr10	23291931	23291932	chr10:23291932:A:T	rs146019954	A	T	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr10	23445808	23445809	chr10:23445809:A:G	rs7920535	A	G	G	Sox3.mouse_HMG_2	1	1	+	11.040034659799423	9.033646717779964	GATCAATGACAATGATT
chr10	23482297	23482298	chr10:23482298:A:G	rs72771426	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.189343060807138	-3.199938373570752	CATCAATGGTGGTGTGG
chr10	23608711	23608712	chr10:23608712:T:C	rs78095884	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr10	24951652	24951653	chr10:24951653:A:G	rs890942217	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.101424272033367	-3.2878571623445225	ACTCAATGGTGGTGAGG
chr10	25633672	25633673	chr10:25633673:C:T	rs10764568	C	T	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr10	25633697	25633698	chr10:25633698:G:T	rs10764569	G	T	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr10	25646711	25646712	chr10:25646712:A:G	rs10764574	A	G	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr10	25707218	25707219	chr10:25707219:G:A	rs77936140	G	A	G	Sox3.mouse_HMG_2	3	1	-	6.48561794476858	1.6287620695463592	TTTCAATGCCAGTGGGG
chr10	25867401	25867402	chr10:25867402:A:G	rs17738073	A	G	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr10	25963629	25963630	chr10:25963630:T:C	rs2176939	T	C	T	Sox3.mouse_HMG_2	0	1	+	2.9323734622619533	3.417508476516061	TCACAATTGCAGTGGAG
chr10	26136471	26136472	chr10:26136472:C:T	rs79664328	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr10	26278758	26278759	chr10:26278759:T:C	rs3781113	T	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr10	26372582	26372583	chr10:26372583:A:G	rs2105059	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr10	26445892	26445893	chr10:26445893:G:C	rs10764616	G	C	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr10	26454994	26454995	chr10:26454995:T:C	rs4747563	T	C	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr10	26573877	26573878	chr10:26573878:G:C	rs73594370	G	C	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr10	26573912	26573913	chr10:26573913:A:G	rs787015	A	G	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr10	26627534	26627535	chr10:26627535:T:C	rs200600907	T	C	c	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr10	26627539	26627540	chr10:26627540:G:A	rs201766094	G	A	g	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr10	26627572	26627573	chr10:26627573:C:T	rs370073984	C	T	g	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr10	26684836	26684837	chr10:26684837:A:G	rs146111209	A	G	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr10	26708113	26708114	chr10:26708114:T:C	rs11015239	T	C	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr10	26781764	26781765	chr10:26781765:C:T	rs78911744	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr10	27228029	27228030	chr10:27228030:G:A	rs11015619	G	A	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr10	27543084	27543085	chr10:27543085:G:T	rs10764700	G	T	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr10	27605865	27605866	chr10:27605866:G:A	rs145696516	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr10	27696345	27696346	chr10:27696346:A:G	rs11015952	A	G	G	Sox3.mouse_HMG_2	6	1	-	3.2196932490303163	-3.1695881853475742	ATTGAATGTTATTGGGT
chr10	27959594	27959595	chr10:27959595:G:A	rs75593214	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr10	27997737	27997738	chr10:27997738:A:G	rs9299595	A	G	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr10	28047766	28047767	chr10:28047767:T:C	rs7920436	T	C	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr10	28047802	28047803	chr10:28047803:T:G	chr10:28047803:T:G	T	G	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr10	28320531	28320532	chr10:28320532:G:A	rs786393	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr10	28334552	28334553	chr10:28334553:G:T	rs191523151	G	T	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr10	28432171	28432172	chr10:28432172:A:G	rs11007105	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.1545148302012676	-3.2347666041766203	AGTCTATTCCATTGAAA
chr10	28623207	28623208	chr10:28623208:T:A	rs146228734	T	A	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr10	28662656	28662657	chr10:28662657:A:G	rs607990	A	G	A	Sox3.mouse_HMG_2	10	1	+	2.6114418264744566	-4.297312952840764	CCTCATTTTTATTAATT
chr10	28872183	28872184	chr10:28872184:G:A	rs1632622	G	A	a	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr10	28872206	28872207	chr10:28872207:A:T	rs1632569	A	T	a	Sox3.mouse_HMG_2	12	1	-	3.669970733445572	-2.380996404485245	CATCAATTCCACTGGAG
chr10	28986090	28986091	chr10:28986091:G:A	rs138073490	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr10	28995039	28995040	chr10:28995040:A:G	rs76921075	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr10	29158933	29158934	chr10:29158934:T:A	rs55953667	T	A	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr10	29240208	29240209	chr10:29240209:A:G	rs10826582	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr10	29515986	29515987	chr10:29515987:C:T	rs11007637	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr10	29667291	29667292	chr10:29667292:A:G	rs35654230	A	G	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr10	29964320	29964321	chr10:29964321:A:T	rs35495115	A	T	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr10	30052188	30052189	chr10:30052189:C:T	rs149971906	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr10	30089933	30089934	chr10:30089934:A:G	rs7078436	A	G	G	Sox3.mouse_HMG_2	10	1	+	2.3122544176477566	-4.596500361667464	TCCCAATTACATTGGTG
chr10	30166903	30166904	chr10:30166904:A:G	rs2689207	A	G	G	Sox3.mouse_HMG_2	16	1	+	2.9876849963458394	3.1992594228310898	CATCAACTCCATTTATA
chr10	30253135	30253136	chr10:30253136:G:A	rs1758935	G	A	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr10	30253710	30253711	chr10:30253711:G:A	rs511383	G	A	A	Sox3.mouse_HMG_2	10	1	+	2.8516234318998737	9.760378211215096	CATCAAGTCTGTTGATG
chr10	30383264	30383265	chr10:30383265:T:A	rs2480284	T	A	.	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr10	30558077	30558078	chr10:30558078:T:C	rs4749568	T	C	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr10	30558094	30558095	chr10:30558095:A:C	rs145311269	A	C	A	Sox3.mouse_HMG_2	4	1	+	6.5156420064128735	-0.3924332213801837	CTGCAATGTCATTGACA
chr10	30999079	30999080	chr10:30999080:C:G	rs546989348	C	G	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr10	31021910	31021911	chr10:31021911:A:T	rs185640342	A	T	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr10	31774457	31774458	chr10:31774458:C:T	rs1042182892	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr10	31774461	31774462	chr10:31774462:T:C	rs7901745	T	C	t	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr10	32240780	32240781	chr10:32240781:C:T	rs2806129	C	T	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	32909982	32909983	chr10:32909983:T:C	rs2488320	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr10	33117558	33117559	chr10:33117559:C:T	rs149424212	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr10	33233924	33233925	chr10:33233925:T:C	rs75318989	T	C	T	Sox3.mouse_HMG_2	6	1	+	5.084313396718858	-1.3049680376590351	CATCAATGCTATTCTAG
chr10	33235399	33235400	chr10:33235400:G:A	rs112982326	G	A	G	Sox3.mouse_HMG_2	3	1	-	8.589287631563476	3.7324317563412537	GAGCAATGGTAGTGACT
chr10	33254937	33254938	chr10:33254938:G:A	rs1537174	G	A	g	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr10	33254940	33254941	chr10:33254941:G:A	rs1319014	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr10	33304893	33304894	chr10:33304894:A:G	rs11597915	A	G	A	Sox3.mouse_HMG_2	16	1	-	3.456429264985707	1.8534362153252562	TTTGAATGTCATTGCTT
chr10	33318783	33318784	chr10:33318784:G:A	rs61843241	G	A	g	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr10	33490545	33490546	chr10:33490546:G:A	rs117344365	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr10	33509817	33509818	chr10:33509818:A:C	rs2605506	A	C	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr10	33509820	33509821	chr10:33509821:T:G	chr10:33509821:T:G	T	G	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr10	33602903	33602904	chr10:33602904:C:A	rs11009465	C	A	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr10	33661595	33661596	chr10:33661596:G:A	rs117937609	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr10	33794722	33794723	chr10:33794723:G:A	rs2777518	G	A	g	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr10	33925157	33925158	chr10:33925158:T:C	rs1154683	T	C	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr10	34003793	34003794	chr10:34003794:T:G	rs224703	T	G	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr10	34045830	34045831	chr10:34045831:G:A	rs151296196	G	A	G	Sox3.mouse_HMG_2	0	1	+	8.19456323968663	6.498070945983967	GATCAGTGATATTGAGG
chr10	34531111	34531112	chr10:34531112:G:T	rs114114739	G	T	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr10	34733289	34733290	chr10:34733290:T:C	rs149691167	T	C	T	Sox3.mouse_HMG_2	5	1	+	4.133875611055557	4.133875611055557	TATCATTGACAGTGACT
chr10	34743365	34743366	chr10:34743366:A:G	rs7897569	A	G	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr10	34808469	34808470	chr10:34808470:T:C	rs4934665	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr10	34968957	34968958	chr10:34968958:G:A	rs4007288	G	A	.	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr10	35070546	35070547	chr10:35070547:A:G	rs12240347	A	G	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr10	35092444	35092445	chr10:35092445:G:A	rs11593858	G	A	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr10	35126828	35126829	chr10:35126829:C:G	rs779460175	C	G	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr10	35126854	35126855	chr10:35126855:T:C	rs568310769	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr10	35128273	35128274	chr10:35128274:C:A	rs7902166	C	A	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr10	35185755	35185756	chr10:35185756:G:T	chr10:35185756:G:T	G	T	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr10	35185770	35185771	chr10:35185771:T:C	rs4934540	T	C	C	Sox3.mouse_HMG_2	6	1	+	3.572356624295274	-2.8169248100826167	CCTCAGTTCTATTGACA
chr10	35240118	35240119	chr10:35240119:C:T	rs4934541	C	T	c	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr10	35253681	35253682	chr10:35253682:G:T	rs12240638	G	T	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr10	35253828	35253829	chr10:35253829:T:C	rs12249814	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	35267609	35267610	chr10:35267610:T:C	rs142460001	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.192191431272437	-1.492182768187898	TGACAATGATATAGATG
chr10	35410795	35410796	chr10:35410796:A:T	rs4934751	A	T	A	Sox3.mouse_HMG_2	15	1	+	6.345376678528931	8.648766371987616	CATCAGTGTCATTGGAG
chr10	35684379	35684380	chr10:35684380:C:T	rs661752	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr10	35994144	35994145	chr10:35994145:C:T	rs16936504	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr10	35994162	35994163	chr10:35994163:T:C	rs1832974	T	C	T	Sox3.mouse_HMG_2	0	1	-	2.3247745015837546	4.021266795286418	ATTCAAAGTCAGTGTTT
chr10	36325542	36325543	chr10:36325543:A:G	rs1779872	A	G	A	Sox3.mouse_HMG_2	4	1	+	2.159678297305484	-4.229603137072405	GATCAATGTGAATGGAT
chr10	36606355	36606356	chr10:36606356:C:T	rs10827651	C	T	C	Sox3.mouse_HMG_2	8	1	-	5.9582090819909475	4.739418697246451	GGACAGTGGCATTGATA
chr10	36771839	36771840	chr10:36771840:C:T	rs11010852	C	T	T	Sox3.mouse_HMG_2	3	1	+	2.9803708471743358	-1.8764850280478893	AATCAATGTTGGTCATG
chr10	37566620	37566621	chr10:37566621:C:G	rs545748736	C	G	c	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr10	37702139	37702140	chr10:37702140:C:T	rs67598405	C	T	.	Sox3.mouse_HMG_2	9	1	+	5.574867148139497	6.267519691011457	AATCAACTCCAGTGATC
chr10	37702152	37702153	chr10:37702153:C:T	rs4934899	C	T	.	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr10	38527724	38527725	chr10:38527725:A:G	rs149329934	A	G	.	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr10	38527731	38527732	chr10:38527732:T:A	rs922968455	T	A	.	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr10	38528338	38528339	chr10:38528339:C:G	rs11011630	C	G	.	Sox3.mouse_HMG_2	13	1	-	4.030061440405679	-2.357198598521533	AGTCAATTCCATTGCAA
chr10	38528361	38528362	chr10:38528362:T:A	rs1294549316	T	A	.	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr10	38822943	38822944	chr10:38822944:A:G	rs10870428	A	G	.	Sox3.mouse_HMG_2	12	1	-	2.7151343700075468	-3.335832767923269	AGTCCATTCCATTGGTT
chr10	41844532	41844533	chr10:41844533:T:C	rs61846559	T	C	.	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr10	41844554	41844555	chr10:41844555:C:T	rs61846558	C	T	.	Sox3.mouse_HMG_2	9	1	+	4.1933697735898345	4.886022316461794	AATCAATTTCATTTGAT
chr10	41845975	41845976	chr10:41845976:C:T	rs766536860	C	T	.	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr10	41878667	41878668	chr10:41878668:G:A	rs62641334	G	A	.	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr10	41914673	41914674	chr10:41914674:A:C	rs1324953000	A	C	.	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr10	42428606	42428607	chr10:42428607:T:C	rs2419674	T	C	.	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr10	42976588	42976589	chr10:42976589:A:C	rs61845273	A	C	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr10	42986507	42986508	chr10:42986508:G:A	rs2066394	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr10	42988522	42988523	chr10:42988523:T:C	rs3123728	T	C	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr10	43285533	43285534	chr10:43285534:C:T	rs11238502	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr10	43793805	43793806	chr10:43793806:G:T	rs1028519083	G	T	.	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr10	43793853	43793854	chr10:43793854:A:G	rs10899910	A	G	.	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr10	43793857	43793858	chr10:43793858:G:A	rs57113623	G	A	.	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr10	43888896	43888897	chr10:43888897:A:T	rs79128199	A	T	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr10	44031860	44031861	chr10:44031861:A:C	rs72782973	A	C	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr10	44143643	44143644	chr10:44143644:T:C	rs766927	T	C	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr10	44355927	44355928	chr10:44355928:A:G	rs920174	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.636623051690196	-1.7526583826876927	CCACAATGGCTTTGATG
chr10	44371697	44371698	chr10:44371698:A:G	rs1029153	A	G	G	Sox3.mouse_HMG_2	15	1	-	4.211007952544446	0.43120853503865114	AGTAAATTATAGTGATG
chr10	44506921	44506922	chr10:44506922:A:G	rs11598086	A	G	a	Sox3.mouse_HMG_2	6	1	-	2.326341072775054	-4.062940361602838	AATCAATGGCAGAGTGT
chr10	44507590	44507591	chr10:44507591:A:G	rs148185869	A	G	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr10	44510949	44510950	chr10:44510950:G:A	rs1889923	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	44715241	44715242	chr10:44715242:T:G	rs7097094	T	G	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr10	44820817	44820818	chr10:44820818:T:A	rs10900117	T	A	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr10	45471149	45471150	chr10:45471150:T:C	rs76491632	T	C	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr10	45471179	45471180	chr10:45471180:G:A	rs901684	G	A	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr10	46235971	46235972	chr10:46235972:A:G	rs7091685	A	G	.	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr10	46257669	46257670	chr10:46257670:C:T	rs191073147	C	T	.	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	46285999	46286000	chr10:46286000:T:C	rs79031606	T	C	.	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr10	46327884	46327885	chr10:46327885:G:A	rs74129864	G	A	.	Sox3.mouse_HMG_2	8	1	-	6.550723115986697	7.805145082142365	CATCAATGCTTGTGGTT
chr10	46530174	46530175	chr10:46530175:A:G	rs28444926	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr10	46596194	46596195	chr10:46596195:G:A	rs28470456	G	A	G	Sox3.mouse_HMG_2	12	1	-	5.472725084698515	11.523692222629332	CAACAATGGCATCGAGG
chr10	46878340	46878341	chr10:46878341:G:T	rs577730774	G	T	G	Sox3.mouse_HMG_2	8	1	+	4.603422742225466	5.417060675229679	GGTCACTGGCAGTGAGA
chr10	47041193	47041194	chr10:47041194:C:T	rs2259936	C	T	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr10	47045267	47045268	chr10:47045268:A:C	rs528869080	A	C	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr10	47045278	47045279	chr10:47045279:G:A	rs145175052	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	47177796	47177797	chr10:47177797:A:G	rs79639638	A	G	A	Sox3.mouse_HMG_2	4	1	+	4.07210209985387	-2.3171793345240195	TTTCATTTGTATTGAGA
chr10	47315637	47315638	chr10:47315638:G:A	rs79640695	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr10	47374066	47374067	chr10:47374067:A:G	rs6587052	A	G	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr10	47383290	47383291	chr10:47383291:G:T	rs1993493	G	T	G	Sox3.mouse_HMG_2	7	1	+	3.843754594992357	2.717863381147112	CATCAGTGGCATTGGCA
chr10	47409358	47409359	chr10:47409359:C:T	chr10:47409359:C:T	C	T	C	Sox3.mouse_HMG_2	9	1	+	1.8613928659209824	2.554045408792942	GTCCAATTCCAGTGAGC
chr10	47726846	47726847	chr10:47726847:G:A	rs28407202	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr10	47997136	47997137	chr10:47997137:T:C	rs150648084	T	C	c	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	47997138	47997139	chr10:47997139:C:T	rs3125114	C	T	t	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr10	48222564	48222565	chr10:48222565:A:G	rs12252237	A	G	A	Sox3.mouse_HMG_2	16	1	-	5.0439521234347255	3.440959073774275	TCTGAATTCTATTGAGT
chr10	48369919	48369920	chr10:48369920:G:A	rs78081234	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr10	48383674	48383675	chr10:48383675:C:T	rs2698761	C	T	C	Sox3.mouse_HMG_2	13	1	+	4.68887232631028	4.68887232631028	CATCAGTGCCATTCATT
chr10	48406347	48406348	chr10:48406348:G:A	rs3827680	G	A	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr10	48477399	48477400	chr10:48477400:T:C	rs78395468	T	C	C	Sox3.mouse_HMG_2	0	1	+	5.696645706363797	6.181780720617906	TATCCATTGTATTGTTG
chr10	48511025	48511026	chr10:48511026:T:C	rs10857586	T	C	T	Sox3.mouse_HMG_2	15	1	-	3.6820593729753552	3.2483219217140142	GGTCTATTCCAGTGAAG
chr10	48733021	48733022	chr10:48733022:A:G	rs7076662	A	G	G	Sox3.mouse_HMG_2	6	1	-	3.682717254683741	-2.7065641796941478	CATTAATTTCATTCAAG
chr10	48741910	48741911	chr10:48741911:G:T	rs57379974	G	T	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr10	48741911	48741912	chr10:48741912:A:T	rs59859369	A	T	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	48748489	48748490	chr10:48748490:T:C	rs67702314	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr10	48891479	48891480	chr10:48891480:T:A	rs535133639	T	A	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr10	48907345	48907346	chr10:48907346:C:T	rs12263240	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr10	48935540	48935541	chr10:48935541:A:G	rs150168946	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.388797145319101	-3.0004842890587877	CATGAATGCTATTAAAG
chr10	48935545	48935546	chr10:48935546:T:C	rs10776658	T	C	T	Sox3.mouse_HMG_2	1	1	-	3.388797145319101	1.3824092032996451	CATGAATGCTATTAAAG
chr10	48948417	48948418	chr10:48948418:C:T	rs2137921	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr10	49088935	49088936	chr10:49088936:C:T	rs12762834	C	T	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr10	49141333	49141334	chr10:49141334:A:G	rs11814668	A	G	A	Sox3.mouse_HMG_2	3	1	+	2.894386419934417	3.744537349304028	CACAAATGGCAGTGATG
chr10	49605546	49605547	chr10:49605547:G:A	rs8178980	G	A	G	Sox3.mouse_HMG_2	13	1	+	3.3196987658477903	-2.7319397383385216	CATTAATTGGATTGAGA
chr10	50169625	50169626	chr10:50169626:T:A	rs375802141	T	A	T	Sox3.mouse_HMG_2	10	1	-	6.507144812157257	-0.40160996715796476	CATCAATTACATTTAAG
chr10	50875060	50875061	chr10:50875061:G:A	rs61856593	G	A	G	Sox3.mouse_HMG_2	3	1	-	3.3442463081316403	-1.5126095670905837	TCTCAATTGTTTTGTTT
chr10	51043832	51043833	chr10:51043833:G:A	rs11814118	G	A	G	Sox3.mouse_HMG_2	14	1	+	5.604838375555084	8.922904645326685	AGACAATGGCATTGGAT
chr10	51138139	51138140	chr10:51138140:A:G	rs10995831	A	G	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	51171026	51171027	chr10:51171027:G:A	rs9415760	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr10	51171035	51171036	chr10:51171036:T:C	rs9415761	T	C	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr10	51919299	51919300	chr10:51919300:C:T	rs1937683	C	T	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr10	51964863	51964864	chr10:51964864:A:G	rs7085893	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.2386677655441107	-3.150613668833779	CTACAATGGCATTCAAT
chr10	52207041	52207042	chr10:52207042:C:A	rs7898960	C	A	C	Sox3.mouse_HMG_2	3	1	+	2.8209828642183874	-4.0796873750405185	TTGCAATGGCATTCATG
chr10	52309425	52309426	chr10:52309426:C:T	rs1896367	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr10	52352523	52352524	chr10:52352524:T:C	rs10762712	T	C	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr10	52812377	52812378	chr10:52812378:T:C	rs11003182	T	C	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr10	52818185	52818186	chr10:52818186:A:T	rs116336031	A	T	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr10	52818197	52818198	chr10:52818198:C:G	chr10:52818198:C:G	C	G	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr10	52911893	52911894	chr10:52911894:G:A	rs7093457	G	A	A	Sox3.mouse_HMG_2	5	1	+	6.530425040118495	12.919706474496385	TTTCAGTGTTATTGAGA
chr10	53635557	53635558	chr10:53635558:G:A	rs7078645	G	A	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr10	53843982	53843983	chr10:53843983:T:C	rs745328967	T	C	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr10	53965576	53965577	chr10:53965577:G:A	rs2593135	G	A	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr10	54009576	54009577	chr10:54009577:G:A	rs2610875	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr10	54009649	54009650	chr10:54009650:A:G	rs2660147	A	G	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr10	54064415	54064416	chr10:54064416:T:C	rs12257494	T	C	c	Sox3.mouse_HMG_2	10	1	-	2.584541321114192	-4.324213458201029	CATCAGTTCCAGTGGAG
chr10	54112238	54112239	chr10:54112239:C:T	rs10825239	C	T	T	Sox3.mouse_HMG_2	13	1	-	4.6441463648378125	-1.4074921393485	CAAAAATGTCATTGGTA
chr10	54304187	54304188	chr10:54304188:C:T	rs7919725	C	T	T	Sox3.mouse_HMG_2	12	1	-	2.6381678068550274	2.9737893415959267	AAACAATGATATGGGTG
chr10	54419078	54419079	chr10:54419079:C:T	rs1758816	C	T	T	Sox3.mouse_HMG_2	5	1	-	5.21575024599531	11.605031680373202	TATCAGTTGTATTGACC
chr10	54665937	54665938	chr10:54665938:C:T	rs7920655	C	T	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr10	54716346	54716347	chr10:54716347:A:C	rs67442181	A	C	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr10	55509217	55509218	chr10:55509218:G:A	rs11004896	G	A	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr10	55667454	55667455	chr10:55667455:G:A	rs1574191	G	A	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr10	56700845	56700846	chr10:56700846:G:T	rs75171796	G	T	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr10	57053609	57053610	chr10:57053610:G:A	rs73277673	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.6491521739793806	-3.4024863302069313	GTGCCATGCCATTGATG
chr10	57454111	57454112	chr10:57454112:G:A	rs115590581	G	A	a	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr10	57543494	57543495	chr10:57543495:T:C	rs11005853	T	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr10	57543497	57543498	chr10:57543498:C:T	rs11005854	C	T	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr10	57785490	57785491	chr10:57785491:T:C	rs6481339	T	C	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr10	57785492	57785493	chr10:57785493:T:C	rs7077091	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr10	58027602	58027603	chr10:58027603:T:C	rs12357499	T	C	T	Sox3.mouse_HMG_2	12	1	+	2.552182317053656	-3.498784820877161	GCTCATTTATATTGTTG
chr10	58646027	58646028	chr10:58646028:C:A	rs6481417	C	A	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr10	58701561	58701562	chr10:58701562:C:T	rs2393469	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr10	58755707	58755708	chr10:58755708:A:T	rs4325270	A	T	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr10	58932775	58932776	chr10:58932776:T:C	rs12220374	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr10	59133611	59133612	chr10:59133612:G:T	rs1975191	G	T	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr10	59586618	59586619	chr10:59586619:A:G	rs7907910	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr10	59589456	59589457	chr10:59589457:T:C	rs115225219	T	C	T	Sox3.mouse_HMG_2	5	1	-	9.439209383119287	3.0499279487413973	AATCAATGGTAGTTATT
chr10	59594118	59594119	chr10:59594119:A:G	rs4948233	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr10	59632211	59632212	chr10:59632212:G:A	rs7100513	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr10	59943765	59943766	chr10:59943766:C:A	rs373132870	C	A	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr10	60041643	60041644	chr10:60041644:G:T	rs2393582	G	T	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr10	60342557	60342558	chr10:60342558:A:G	rs1473404	A	G	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	60368052	60368053	chr10:60368053:C:T	rs79359809	C	T	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	60368064	60368065	chr10:60368065:A:G	rs79663415	A	G	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr10	60434599	60434600	chr10:60434600:C:T	rs947959011	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr10	60570748	60570749	chr10:60570749:A:G	rs74318560	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr10	60875946	60875947	chr10:60875947:C:A	rs7083122	C	A	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr10	60996633	60996634	chr10:60996634:G:C	rs2393709	G	C	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr10	61085690	61085691	chr10:61085691:A:G	rs117467238	A	G	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr10	61252548	61252549	chr10:61252549:G:T	rs117559418	G	T	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr10	61301513	61301514	chr10:61301514:C:T	rs3107446	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	61390282	61390283	chr10:61390283:C:G	rs4948451	C	G	C	Sox3.mouse_HMG_2	16	1	+	6.76971582841369	8.008987188440196	CATCAAGGGTATTGGTC
chr10	61488036	61488037	chr10:61488037:A:T	rs2249816	A	T	T	Sox3.mouse_HMG_2	0	1	+	5.476037165074835	6.382760926999202	ATTCAATGGCAGTTATA
chr10	61666315	61666316	chr10:61666316:T:C	rs10994865	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr10	61684669	61684670	chr10:61684670:G:A	rs72821788	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr10	61702871	61702872	chr10:61702872:T:C	rs7907498	T	C	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr10	61793185	61793186	chr10:61793186:C:T	rs1002843976	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr10	61935288	61935289	chr10:61935289:C:G	rs6479779	C	G	C	Sox3.mouse_HMG_2	10	1	-	6.816961564761316	6.816961564761316	TTTCAATTTTGGTGATT
chr10	61935302	61935303	chr10:61935303:A:C	rs10994973	A	C	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr10	61940468	61940469	chr10:61940469:A:T	rs4360655	A	T	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr10	61940485	61940486	chr10:61940486:A:G	rs4562771	A	G	G	Sox3.mouse_HMG_2	12	1	-	4.594351036218818	-1.4566161017119992	TATAAATGATAGTGTTT
chr10	61993722	61993723	chr10:61993723:A:G	rs9415635	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	61993736	61993737	chr10:61993737:G:A	rs80092100	G	A	G	Sox3.mouse_HMG_2	3	1	-	7.8138776618993235	2.9570217866771014	TGACAATTATATTGAAG
chr10	61993752	61993753	chr10:61993753:A:T	rs370520548	A	T	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr10	62214469	62214470	chr10:62214470:T:G	rs10995090	T	G	T	Sox3.mouse_HMG_2	16	1	+	4.319024251064106	3.9553025614301602	TTACAATGCCACTGATT
chr10	62225090	62225091	chr10:62225091:C:T	rs12360043	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr10	62249305	62249306	chr10:62249306:G:A	rs111945636	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr10	62249316	62249317	chr10:62249317:G:A	rs10761616	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr10	62344109	62344110	chr10:62344110:C:T	rs7087028	C	T	c	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr10	62377839	62377840	chr10:62377840:A:G	rs12355770	A	G	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr10	62424763	62424764	chr10:62424764:C:A	rs3999111	C	A	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr10	62443986	62443987	chr10:62443987:A:C	rs80060819	A	C	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr10	62631614	62631615	chr10:62631615:G:A	rs10995245	G	A	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr10	62728083	62728084	chr10:62728084:A:G	rs79979619	A	G	A	Sox3.mouse_HMG_2	15	1	-	6.442311941443493	2.6625125239376977	CATCAAATCTATTGGTG
chr10	62987273	62987274	chr10:62987274:G:C	rs16917995	G	C	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr10	63374521	63374522	chr10:63374522:T:G	rs35693916	T	G	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr10	63667024	63667025	chr10:63667025:G:A	rs36080042	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr10	63667038	63667039	chr10:63667039:G:C	rs76404637	G	C	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr10	63682386	63682387	chr10:63682387:C:T	rs145734141	C	T	C	Sox3.mouse_HMG_2	10	1	+	3.680833265846194	3.680833265846194	AATGAATGTTCGTGATT
chr10	63800202	63800203	chr10:63800203:T:G	rs1266702	T	G	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr10	63907492	63907493	chr10:63907493:A:G	rs7086527	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr10	63921219	63921220	chr10:63921220:C:T	rs2243532	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	64733959	64733960	chr10:64733960:A:G	rs16920271	A	G	A	Sox3.mouse_HMG_2	12	1	-	2.354000999985229	-3.6969661379455876	CAGCAATGTCAGTAACT
chr10	64846567	64846568	chr10:64846568:T:C	rs71493914	T	C	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	65126117	65126118	chr10:65126118:G:A	rs4636540	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr10	65159540	65159541	chr10:65159541:A:T	rs10996247	A	T	A	Sox3.mouse_HMG_2	6	1	-	17.809495258982558	10.901420031189506	CATCAATGTTATTGATC
chr10	65220221	65220222	chr10:65220222:T:C	rs16921063	T	C	C	Sox3.mouse_HMG_2	12	1	+	3.030156738165906	-3.0208103997649096	GATCCATTTTTGTGATG
chr10	65398552	65398553	chr10:65398553:G:A	rs10822528	G	A	A	Sox3.mouse_HMG_2	13	1	+	7.020124119536983	0.9684856153506715	TTTCAATTGTCTTGATG
chr10	65474311	65474312	chr10:65474312:C:G	rs6480086	C	G	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr10	65762734	65762735	chr10:65762735:T:C	rs7084681	T	C	T	Sox3.mouse_HMG_2	10	1	-	8.193255540672558	1.2845007613573372	AGGCAATGTTATTGAAG
chr10	65861546	65861547	chr10:65861547:G:T	rs35503142	G	T	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr10	66501616	66501617	chr10:66501617:C:G	rs55856935	C	G	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr10	66623131	66623132	chr10:66623132:C:A	rs9664949	C	A	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr10	66637440	66637441	chr10:66637441:G:A	rs12218587	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr10	67043633	67043634	chr10:67043634:T:A	rs547158879	T	A	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr10	67062376	67062377	chr10:67062377:T:G	rs1925588	T	G	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr10	67100801	67100802	chr10:67100802:A:G	rs2291106	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.96195849295161	-1.7224157065087253	GCTCAATTTCTTTGAGA
chr10	67764719	67764720	chr10:67764720:G:C	rs16924807	G	C	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr10	68156564	68156565	chr10:68156565:G:A	rs71475229	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr10	68177434	68177435	chr10:68177435:A:G	rs10997979	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr10	68304212	68304213	chr10:68304213:C:T	rs7067601	C	T	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr10	68428611	68428612	chr10:68428612:T:G	rs75270147	T	G	T	Sox3.mouse_HMG_2	2	1	+	1.9847166324446872	-3.1691580342352035	CATCCATGCTATGGAAA
chr10	68722480	68722481	chr10:68722481:G:A	rs113255973	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr10	68871392	68871393	chr10:68871393:G:A	rs370543393	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr10	69044028	69044029	chr10:69044029:T:C	rs2429014	T	C	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr10	69110524	69110525	chr10:69110525:G:T	rs7915836	G	T	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr10	69362956	69362957	chr10:69362957:A:T	rs10733851	A	T	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr10	69628733	69628734	chr10:69628734:A:C	rs2812576	A	C	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr10	69628754	69628755	chr10:69628755:C:T	rs2616095	C	T	C	Sox3.mouse_HMG_2	10	1	-	3.725854610413795	10.634609389729018	TCACAATGTCGTTGATC
chr10	69680453	69680454	chr10:69680454:G:A	rs10998910	G	A	G	Sox3.mouse_HMG_2	11	1	+	1.8850192534182932	-2.6864648749149924	TGTAAATTCCAGTGGTG
chr10	69755535	69755536	chr10:69755536:C:T	rs11812198	C	T	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr10	69767712	69767713	chr10:69767713:A:G	rs2255406	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr10	69838551	69838552	chr10:69838552:C:G	rs7913732	C	G	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr10	69874786	69874787	chr10:69874787:G:A	rs9633587	G	A	G	Sox3.mouse_HMG_2	13	1	-	2.15705154186434	2.15705154186434	CATCAATTCCAGCCATG
chr10	69953008	69953009	chr10:69953009:T:C	rs74139248	T	C	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr10	70583632	70583633	chr10:70583633:C:G	rs117318775	C	G	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr10	70710419	70710420	chr10:70710420:C:T	rs12358019	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr10	70952686	70952687	chr10:70952687:A:G	rs145105761	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr10	70995770	70995771	chr10:70995771:A:C	rs10823658	A	C	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr10	71074188	71074189	chr10:71074189:C:A	rs1213780315	C	A	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr10	71106087	71106088	chr10:71106088:A:G	rs10999680	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr10	71215170	71215171	chr10:71215171:T:G	rs10762430	T	G	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr10	71334439	71334440	chr10:71334440:G:A	rs12252139	G	A	G	Sox3.mouse_HMG_2	11	1	+	4.376842503475565	-0.19464162485772024	GATCTATTATAGTGGTA
chr10	71404237	71404238	chr10:71404238:C:T	rs10999803	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr10	71588200	71588201	chr10:71588201:A:G	rs138622309	A	G	A	Sox3.mouse_HMG_2	6	1	-	4.389835999645128	-1.999445434732762	TGTCAATGTTTTTGTTC
chr10	71631883	71631884	chr10:71631884:G:A	rs61851977	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr10	71769121	71769122	chr10:71769122:A:C	rs10999991	A	C	A	Sox3.mouse_HMG_2	12	1	-	6.634756241025344	0.24816756835362813	ATTCAATGTTATTTAAT
chr10	71769140	71769141	chr10:71769141:T:C	rs10999992	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr10	71771311	71771312	chr10:71771312:A:G	rs10762477	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr10	71815787	71815788	chr10:71815788:G:A	rs1054635	G	A	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr10	71877562	71877563	chr10:71877563:G:C	rs10823861	G	C	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr10	72275957	72275958	chr10:72275958:T:C	rs11192	T	C	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	72328368	72328369	chr10:72328369:G:A	rs113672582	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr10	73894417	73894418	chr10:73894418:C:T	rs74614028	C	T	c	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr10	74035491	74035492	chr10:74035492:C:T	rs1471757083	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr10	74057259	74057260	chr10:74057260:A:T	rs4587673	A	T	a	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr10	74077446	74077447	chr10:74077447:T:C	rs1908337	T	C	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr10	74827444	74827445	chr10:74827445:G:C	rs74634963	G	C	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr10	75168390	75168391	chr10:75168391:G:C	rs1995569	G	C	G	Sox3.mouse_HMG_2	4	1	+	1.2146516633767488	0.6958578699615808	CAACGATGCTTTTGATG
chr10	75230486	75230487	chr10:75230487:C:T	rs11001335	C	T	C	Sox3.mouse_HMG_2	1	1	-	4.951303939706682	6.957691881726142	CGACAATGGTATTGTGC
chr10	75230492	75230493	chr10:75230493:T:C	rs556535157	T	C	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr10	75409009	75409010	chr10:75409010:T:A	rs181699388	T	A	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr10	76126978	76126979	chr10:76126979:T:A	rs12098745	T	A	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr10	76168545	76168546	chr10:76168546:A:G	rs33997838	A	G	A	Sox3.mouse_HMG_2	1	1	+	3.069653667116102	1.0632657250966422	CATCAATTTCAGTTTGT
chr10	76395383	76395384	chr10:76395384:T:C	rs749128	T	C	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr10	76859370	76859371	chr10:76859371:G:A	rs11001906	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr10	77079625	77079626	chr10:77079626:C:A	rs45495698	C	A	C	Sox3.mouse_HMG_2	15	1	+	4.10767547160718	5.584085195654291	GATCAATTTTACTGTCT
chr10	77162924	77162925	chr10:77162925:G:A	rs569601186	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr10	77419586	77419587	chr10:77419587:A:T	rs40430	A	T	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr10	77537237	77537238	chr10:77537238:C:G	rs11002199	C	G	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr10	77639993	77639994	chr10:77639994:G:A	rs2812419	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr10	77664045	77664046	chr10:77664046:C:T	rs2670158	C	T	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr10	78087296	78087297	chr10:78087297:A:G	rs118052062	A	G	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr10	78116596	78116597	chr10:78116597:G:C	rs2253909	G	C	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr10	78176431	78176432	chr10:78176432:G:A	rs72642297	G	A	G	Sox3.mouse_HMG_2	13	1	+	4.097303209044741	-1.9543352951415713	GAACAATGCCATCGAGC
chr10	78510311	78510312	chr10:78510312:G:A	rs11002586	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr10	78543140	78543141	chr10:78543141:C:T	rs55896222	C	T	C	Sox3.mouse_HMG_2	16	1	-	1.6907745317359149	1.479200105250664	TCCCAATGTCATTGGCG
chr10	78543768	78543769	chr10:78543769:G:A	rs75083123	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr10	78574798	78574799	chr10:78574799:G:A	rs164243	G	A	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr10	78641315	78641316	chr10:78641316:T:A	rs10824629	T	A	T	Sox3.mouse_HMG_2	5	1	-	2.4737039960648826	-4.434371231728173	TGTCCATTTCAGTGAGC
chr10	78798979	78798980	chr10:78798980:T:A	rs7898598	T	A	A	Sox3.mouse_HMG_2	15	1	+	0.7150412376579316	-1.588348455800753	GCTCAAGGCCAGAGATT
chr10	78811915	78811916	chr10:78811916:T:C	rs10824649	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr10	78915340	78915341	chr10:78915341:G:C	rs114730985	G	C	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr10	78960458	78960459	chr10:78960459:A:G	rs112634910	A	G	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr10	79037287	79037288	chr10:79037288:C:T	rs113105314	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr10	79282233	79282234	chr10:79282234:G:C	rs12785054	G	C	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr10	79305443	79305444	chr10:79305444:G:A	rs1250558	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr10	79317900	79317901	chr10:79317901:G:A	rs372536263	G	A	G	Sox3.mouse_HMG_2	9	1	-	5.242005266063814	5.934657808935774	AGTCAATGGCATTCAAA
chr10	79385778	79385779	chr10:79385779:T:C	rs1063119	T	C	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr10	79396997	79396998	chr10:79396998:G:A	rs6480936	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr10	79434738	79434739	chr10:79434739:T:C	rs138802101	T	C	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	79507970	79507971	chr10:79507971:A:G	rs78844144	A	G	.	Sox3.mouse_HMG_2	5	1	+	2.3386100137706123	-4.050671420607276	CATCAATGGTCCTGAAG
chr10	80252342	80252343	chr10:80252343:C:T	rs7081164	C	T	.	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr10	80497415	80497416	chr10:80497416:A:C	rs200753570	A	C	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr10	80497418	80497419	chr10:80497419:G:A	rs7902097	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr10	80613522	80613523	chr10:80613523:G:A	rs11186280	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr10	80663930	80663931	chr10:80663931:C:T	rs1913754	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr10	80684280	80684281	chr10:80684281:G:A	rs66491571	G	A	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr10	80684286	80684287	chr10:80684287:C:T	rs67126110	C	T	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr10	80948671	80948672	chr10:80948672:C:A	rs7909819	C	A	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr10	81526535	81526536	chr10:81526536:A:C	rs2346522	A	C	C	Sox3.mouse_HMG_2	5	1	-	4.388482189810224	4.907275983225391	CATCATTTCTAGTGACA
chr10	81953064	81953065	chr10:81953065:G:C	rs12411402	G	C	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr10	82149556	82149557	chr10:82149557:A:G	rs143692689	A	G	A	Sox3.mouse_HMG_2	1	1	-	2.699317048067093	2.6790990707764486	CTTCATTTTAATTGATT
chr10	82206563	82206564	chr10:82206564:A:G	rs7908131	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.4078751394640308	-3.981406294913859	CCCCAATGCCAGTGTTA
chr10	82705370	82705371	chr10:82705371:T:G	rs7074694	T	G	T	Sox3.mouse_HMG_2	12	1	+	2.693892304615962	-3.692696368055753	TATCAAGGGTCTTGATC
chr10	83273213	83273214	chr10:83273214:T:C	rs79724196	T	C	t	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr10	83876738	83876739	chr10:83876739:C:T	rs12411363	C	T	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr10	84704830	84704831	chr10:84704831:T:C	rs945146	T	C	C	Sox3.mouse_HMG_2	14	1	+	3.8942935048127083	1.8811464109727085	TATCAAGGACAGTGTTT
chr10	85214699	85214700	chr10:85214700:G:T	rs12571520	G	T	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	85741955	85741956	chr10:85741956:C:A	rs75513267	C	A	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr10	85833027	85833028	chr10:85833028:T:C	rs947594	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.4396277619797893	-2.9496536723980995	CCTCAATGACAGAGAGG
chr10	86007286	86007287	chr10:86007287:C:T	rs12776960	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr10	86100492	86100493	chr10:86100493:T:C	rs11201884	T	C	T	Sox3.mouse_HMG_2	14	1	-	3.300064070619735	-0.018002199151866682	TATACATTTCATTGATT
chr10	86155427	86155428	chr10:86155428:G:T	rs187878696	G	T	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr10	86234391	86234392	chr10:86234392:C:T	rs2814332	C	T	T	Sox3.mouse_HMG_2	6	1	+	3.5253345766553363	9.914616011033226	AAACAACGGCATTGGTT
chr10	86302748	86302749	chr10:86302749:A:G	rs12242059	A	G	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr10	86308854	86308855	chr10:86308855:A:T	rs116260881	A	T	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr10	86332574	86332575	chr10:86332575:C:G	rs189310091	C	G	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr10	86441105	86441106	chr10:86441106:G:C	rs17422287	G	C	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr10	86664953	86664954	chr10:86664954:C:T	rs115740364	C	T	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr10	86798713	86798714	chr10:86798714:C:T	rs4933411	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	87090523	87090524	chr10:87090524:C:G	rs4244974	C	G	N	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr10	87609247	87609248	chr10:87609248:T:C	rs185549563	T	C	T	Sox3.mouse_HMG_2	10	1	-	1.7182026265659462	-5.190552152749274	TATCAAAGGTATGGAGG
chr10	87703006	87703007	chr10:87703007:T:C	rs7084129	T	C	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr10	87740155	87740156	chr10:87740156:G:A	rs12571331	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr10	87740164	87740165	chr10:87740165:T:C	rs34122192	T	C	T	Sox3.mouse_HMG_2	11	1	-	2.2575915915138793	6.8290757198471645	TATCATTGGCAATGAAT
chr10	87978534	87978535	chr10:87978535:G:A	rs148207180	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr10	88131043	88131044	chr10:88131044:G:C	rs10887784	G	C	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr10	88706538	88706539	chr10:88706539:C:T	rs12267931	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr10	88794355	88794356	chr10:88794356:T:C	rs303502	T	C	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr10	88951543	88951544	chr10:88951544:A:G	rs12264840	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr10	89091620	89091621	chr10:89091621:C:T	rs11202971	C	T	c	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr10	89121775	89121776	chr10:89121776:G:A	rs80192414	G	A	A	Sox3.mouse_HMG_2	3	1	-	4.0375815121341905	-0.8192743630880317	CATCATTTGTAATGATA
chr10	89427875	89427876	chr10:89427876:A:T	rs304412	A	T	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	89700013	89700014	chr10:89700014:A:C	rs73382916	A	C	A	Sox3.mouse_HMG_2	12	1	-	4.221416831601646	-2.16517184107007	GTTCAATTTCATTTTTA
chr10	89811560	89811561	chr10:89811561:T:G	rs4274138	T	G	G	Sox3.mouse_HMG_2	4	1	-	4.4655392781810805	-2.4425359496119765	TCTTAATTTTAGTGTTG
chr10	89849311	89849312	chr10:89849312:T:C	rs10881691	T	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr10	90170955	90170956	chr10:90170956:G:A	rs4142854	G	A	G	Sox3.mouse_HMG_2	8	1	+	11.499893667203562	10.281103282459064	GAACAATTGCATTGAAT
chr10	90175096	90175097	chr10:90175097:A:G	rs7100222	A	G	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr10	90314388	90314389	chr10:90314389:C:T	rs10509599	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr10	90453234	90453235	chr10:90453235:C:A	rs2487780	C	A	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr10	90471079	90471080	chr10:90471080:G:A	rs2490314	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr10	90816632	90816633	chr10:90816633:T:C	rs11813096	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	90897239	90897240	chr10:90897240:T:C	rs79703029	T	C	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr10	90919872	90919873	chr10:90919873:G:C	rs10047267	G	C	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr10	91300460	91300461	chr10:91300461:C:T	rs3890159	C	T	T	Sox3.mouse_HMG_2	7	1	-	3.9056300094988776	-2.7231914855891795	CATTAATGTCATAGAAC
chr10	91312187	91312188	chr10:91312188:G:A	rs2421322	G	A	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr10	91412629	91412630	chr10:91412630:T:A	rs190273384	T	A	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr10	91412630	91412631	chr10:91412631:A:T	rs55762845	A	T	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr10	91545468	91545469	chr10:91545469:C:T	rs10881919	C	T	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr10	91621611	91621612	chr10:91621612:G:A	rs529680285	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr10	91643374	91643375	chr10:91643375:T:C	rs10881937	T	C	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr10	91706441	91706442	chr10:91706442:T:C	rs548879717	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr10	91797361	91797362	chr10:91797362:G:C	rs536335806	G	C	G	Sox3.mouse_HMG_2	13	1	+	4.580738133234972	-1.8065219056922401	TGTTCATGTTATTGATA
chr10	91814160	91814161	chr10:91814161:G:C	rs10881973	G	C	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr10	91814205	91814206	chr10:91814206:A:C	rs7067554	A	C	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr10	92283527	92283528	chr10:92283528:T:C	rs11186894	T	C	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr10	92723725	92723726	chr10:92723726:T:C	rs2488079	T	C	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr10	92873320	92873321	chr10:92873321:T:G	rs11815289	T	G	T	Sox3.mouse_HMG_2	3	1	+	5.37038807857539	4.176724643908313	TATTAATGTCAGTAATA
chr10	92981227	92981228	chr10:92981228:A:C	rs10509648	A	C	A	Sox3.mouse_HMG_2	0	1	-	4.725525781453894	5.5152943132321885	TATTCATGTCAGTGATG
chr10	93080318	93080319	chr10:93080319:A:G	rs17465590	A	G	A	Sox3.mouse_HMG_2	5	1	+	1.7284138661697903	-4.660867568208101	GATCAATTCTCTTGCAG
chr10	93084108	93084109	chr10:93084109:C:G	rs10748591	C	G	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	93116519	93116520	chr10:93116520:G:C	rs376789697	G	C	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr10	93250365	93250366	chr10:93250366:A:G	rs1467684	A	G	G	Sox3.mouse_HMG_2	11	1	-	4.174580130679838	-2.5097940687804976	CCTCAATGTCTTTGGTC
chr10	93255795	93255796	chr10:93255796:G:C	rs1418754	G	C	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr10	93268341	93268342	chr10:93268342:C:T	rs7900460	C	T	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr10	93379678	93379679	chr10:93379679:T:C	rs10882228	T	C	C	Sox3.mouse_HMG_2	15	1	-	3.8338012468675693	3.4000637956062283	GTTCAGTGGTATTGGAG
chr10	94007357	94007358	chr10:94007358:T:G	rs891982361	T	G	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr10	94017539	94017540	chr10:94017540:T:C	rs1192192597	T	C	t	Sox3.mouse_HMG_2	11	1	+	3.022894431305225	-3.6614797681551106	ATTTGATGTCATTGATG
chr10	94439474	94439475	chr10:94439475:A:T	rs2151953	A	T	a	Sox3.mouse_HMG_2	5	1	+	3.5964923839020213	-3.311582843891036	AGTCAATTTTTTTGTTG
chr10	94439477	94439478	chr10:94439478:T:A	rs74153349	T	A	T	Sox3.mouse_HMG_2	8	1	+	3.5964923839020213	1.5640640661533134	AGTCAATTTTTTTGTTG
chr10	94439501	94439502	chr10:94439502:C:T	rs146146552	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr10	94565919	94565920	chr10:94565920:G:A	rs7078478	G	A	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr10	95424376	95424377	chr10:95424377:G:A	rs1536555	G	A	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr10	95662163	95662164	chr10:95662164:C:T	rs11188419	C	T	C	Sox3.mouse_HMG_2	11	1	-	3.968431872296863	-0.6030522560364227	GAACAACTTCAGTGAAA
chr10	95684127	95684128	chr10:95684128:C:T	rs11188433	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr10	95878166	95878167	chr10:95878167:T:C	rs75584894	T	C	T	Sox3.mouse_HMG_2	6	1	+	10.749211924086547	4.359930489708657	TATCAATGGGAGTGATT
chr10	96340007	96340008	chr10:96340008:A:G	rs12254238	A	G	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr10	97101002	97101003	chr10:97101003:C:A	rs1490691	C	A	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr10	97131810	97131811	chr10:97131811:G:T	rs74748453	G	T	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr10	97881528	97881529	chr10:97881529:G:A	rs556047360	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr10	97928131	97928132	chr10:97928132:C:T	rs4917792	C	T	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr10	98013127	98013128	chr10:98013128:A:G	rs522110	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr10	98207357	98207358	chr10:98207358:A:G	rs10509720	A	G	A	Sox3.mouse_HMG_2	3	1	+	2.7081421106016457	3.5582930399712556	GTTAAATTCCATTGAGC
chr10	98209810	98209811	chr10:98209811:A:G	rs11189513	A	G	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr10	98264961	98264962	chr10:98264962:C:T	rs149871694	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr10	98457059	98457060	chr10:98457060:C:T	rs4598598	C	T	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr10	98619421	98619422	chr10:98619422:A:T	rs10748747	A	T	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr10	99579740	99579741	chr10:99579741:G:C	rs6584293	G	C	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr10	99906853	99906854	chr10:99906854:A:G	rs748788225	A	G	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr10	99984642	99984643	chr10:99984643:A:G	rs79448306	A	G	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr10	100363746	100363747	chr10:100363747:C:T	rs1056901	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr10	100384911	100384912	chr10:100384912:A:C	rs1750481	A	C	C	Sox3.mouse_HMG_2	9	1	-	4.12264270538188	-1.8613385545024392	AGACAATTTTGTTGATA
chr10	100873526	100873527	chr10:100873527:C:G	rs11190732	C	G	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr10	101269476	101269477	chr10:101269477:A:G	rs10883604	A	G	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr10	101287300	101287301	chr10:101287301:C:T	rs587854	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr10	101487719	101487720	chr10:101487720:G:A	rs150368873	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	101826598	101826599	chr10:101826599:G:A	rs10883689	G	A	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr10	102604465	102604466	chr10:102604466:A:G	rs74854733	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr10	102854084	102854085	chr10:102854085:C:T	rs909247784	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr10	103368758	103368759	chr10:103368759:G:A	rs924710320	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr10	103767393	103767394	chr10:103767394:G:T	rs79636562	G	T	G	Sox3.mouse_HMG_2	15	1	+	6.675005416412883	9.41213256113291	GATCAATCTCAGTGAGC
chr10	103767402	103767403	chr10:103767403:A:C	rs55909417	A	C	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr10	103804165	103804166	chr10:103804166:A:G	rs57229380	A	G	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr10	104072591	104072592	chr10:104072592:C:T	rs11191916	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr10	104330087	104330088	chr10:104330088:C:T	rs115966612	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr10	104368104	104368105	chr10:104368105:A:G	rs79988991	A	G	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr10	104560885	104560886	chr10:104560886:G:A	rs4918110	G	A	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	106179742	106179743	chr10:106179743:G:A	rs4568932	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr10	106303104	106303105	chr10:106303105:C:T	rs1724045	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr10	106424122	106424123	chr10:106424123:T:C	rs7922849	T	C	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr10	107059366	107059367	chr10:107059367:A:G	rs17195520	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr10	107162422	107162423	chr10:107162423:T:C	rs149884811	T	C	T	Sox3.mouse_HMG_2	9	1	+	5.25598687240851	4.56333432953655	GATTAATTTTAGTGGCT
chr10	107260996	107260997	chr10:107260997:C:T	rs12782984	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr10	107725419	107725420	chr10:107725420:T:C	rs2244594	T	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr10	107725425	107725426	chr10:107725426:A:C	rs2244593	A	C	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr10	107727349	107727350	chr10:107727350:T:C	rs72827083	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr10	108105560	108105561	chr10:108105561:C:G	rs76422103	C	G	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr10	108390874	108390875	chr10:108390875:T:C	rs10884647	T	C	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr10	108512149	108512150	chr10:108512150:T:C	rs11194139	T	C	T	Sox3.mouse_HMG_2	16	1	-	3.8154836799826035	4.027058106467854	GAACACTTTCATTGGTA
chr10	108524119	108524120	chr10:108524120:C:A	rs17124731	C	A	C	Sox3.mouse_HMG_2	1	1	+	4.146635001746701	6.8620765380906406	TCCCAATTCTATTGGTT
chr10	108710048	108710049	chr10:108710049:C:T	rs79513749	C	T	C	Sox3.mouse_HMG_2	14	1	-	1.910601188375793	5.228667458147394	CATCAATATTAATGGTC
chr10	109062314	109062315	chr10:109062315:T:C	rs112498949	T	C	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr10	109072889	109072890	chr10:109072890:G:A	rs75241430	G	A	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr10	109247318	109247319	chr10:109247319:T:C	rs11194510	T	C	T	Sox3.mouse_HMG_2	0	1	+	4.651950192886312	5.1370852071404185	TCTCAATTTTATAGTTG
chr10	109259592	109259593	chr10:109259593:G:A	rs11194519	G	A	G	Sox3.mouse_HMG_2	11	1	+	6.616595516691343	2.0451113883580585	TCTCAATTTCAGTGCTG
chr10	109308894	109308895	chr10:109308895:G:A	rs10884741	G	A	A	Sox3.mouse_HMG_2	11	1	+	5.940542194258163	1.3690580659248788	GGACAATGTCAGTAATG
chr10	109931183	109931184	chr10:109931184:C:T	rs12570423	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr10	109946804	109946805	chr10:109946805:A:T	rs188981163	A	T	A	Sox3.mouse_HMG_2	6	1	-	2.671925248373192	-4.236149979419863	CCAGAATGTTAGTGAGA
chr10	109978903	109978904	chr10:109978904:A:T	rs9630102	A	T	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr10	109991121	109991122	chr10:109991122:A:T	rs7085024	A	T	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr10	110039852	110039853	chr10:110039853:T:C	rs12358885	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr10	110135082	110135083	chr10:110135083:C:A	rs115945554	C	A	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr10	110277815	110277816	chr10:110277816:A:G	rs12243448	A	G	A	Sox3.mouse_HMG_2	9	1	-	2.657181778379911	1.9645292355079518	GATTAAGGGTAGTGAGG
chr10	110414969	110414970	chr10:110414970:A:G	rs1024829398	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr10	110414971	110414972	chr10:110414972:A:C	rs1017587303	A	C	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr10	110415038	110415039	chr10:110415039:T:C	rs79768919	T	C	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr10	110482035	110482036	chr10:110482036:A:G	rs74158104	A	G	A	Sox3.mouse_HMG_2	11	1	-	1.8630176872416848	-4.82135651221865	GATAAATGCTATGGAGA
chr10	110513945	110513946	chr10:110513946:A:G	rs10884985	A	G	A	Sox3.mouse_HMG_2	9	1	-	3.532633639520467	2.8399810966485077	GGGCAGTGCTAGTGATT
chr10	110639520	110639521	chr10:110639521:T:C	rs72834009	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr10	110721780	110721781	chr10:110721781:T:A	rs7905799	T	A	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr10	110725322	110725323	chr10:110725323:C:T	rs73356958	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr10	110850046	110850047	chr10:110850047:A:G	rs4918605	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr10	111498888	111498889	chr10:111498889:A:T	rs1914110	A	T	A	Sox3.mouse_HMG_2	5	1	+	1.9967358736656142	-4.911339354127443	CATCCATTTCAATGAGT
chr10	111714784	111714785	chr10:111714785:T:C	rs61871351	T	C	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr10	111720880	111720881	chr10:111720881:G:A	rs78281897	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr10	111748082	111748083	chr10:111748083:G:T	rs11195707	G	T	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr10	111785820	111785821	chr10:111785821:A:G	rs118095556	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr10	111916518	111916519	chr10:111916519:A:T	rs9633725	A	T	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr10	111936431	111936432	chr10:111936432:A:T	rs2111640	A	T	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr10	112276032	112276033	chr10:112276033:T:C	rs931809509	T	C	T	Sox3.mouse_HMG_2	12	1	+	1.0082054407759975	-5.04276169715482	CATCAAGGGGAGTGGTT
chr10	112276039	112276040	chr10:112276040:C:G	rs4918733	C	G	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr10	112282189	112282190	chr10:112282190:T:A	rs72819629	T	A	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr10	112304212	112304213	chr10:112304213:A:G	rs61431162	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.6441244672890702	-2.7451569670888203	ACTCAATGCTATTTTTT
chr10	112311309	112311310	chr10:112311310:G:T	rs11195886	G	T	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr10	112311315	112311316	chr10:112311316:A:G	rs10885328	A	G	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr10	112356732	112356733	chr10:112356733:C:T	rs943261	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr10	112519657	112519658	chr10:112519658:G:A	rs67451905	G	A	G	Sox3.mouse_HMG_2	16	1	-	7.747075512448521	9.350068562108971	CCTCAATGCCAGTGTTC
chr10	112632001	112632002	chr10:112632002:A:G	rs76763495	A	G	A	Sox3.mouse_HMG_2	14	1	-	5.197475788090275	3.1843286942502744	TTACAATTATATTGTTA
chr10	112750919	112750920	chr10:112750920:A:G	rs185984841	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr10	112763794	112763795	chr10:112763795:T:C	rs4376830	T	C	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr10	112911142	112911143	chr10:112911143:C:A	rs17130145	C	A	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr10	113317774	113317775	chr10:113317775:C:T	rs1904443	C	T	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr10	113488499	113488500	chr10:113488500:C:A	rs1033773	C	A	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr10	113515605	113515606	chr10:113515606:T:G	rs7919248	T	G	T	Sox3.mouse_HMG_2	14	1	-	3.4497525813174845	-2.5827760362711607	TATCAAATTCATTTATG
chr10	114002636	114002637	chr10:114002637:A:G	rs55677194	A	G	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr10	114346509	114346510	chr10:114346510:G:A	rs114584860	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr10	114374544	114374545	chr10:114374545:G:A	chr10:114374545:G:A	G	A	G	Sox3.mouse_HMG_2	0	1	-	1.5412947271594066	1.056159712905298	CATCAAAGCCAGTGCTC
chr10	114390401	114390402	chr10:114390402:C:T	rs4751756	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr10	114442569	114442570	chr10:114442570:A:G	rs1885334	A	G	A	Sox3.mouse_HMG_2	4	1	+	13.288676305371776	6.899394870993886	GATCAATGCCAGTGAGG
chr10	114547580	114547581	chr10:114547581:C:G	rs41284354	C	G	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr10	114551864	114551865	chr10:114551865:G:A	rs4144582	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	114669132	114669133	chr10:114669133:T:C	rs4752090	T	C	C	Sox3.mouse_HMG_2	1	1	-	2.871698977378816	0.865311035359356	GATCAATTTGAGTAAAT
chr10	114749369	114749370	chr10:114749370:T:C	rs808312	T	C	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr10	115858177	115858178	chr10:115858178:A:G	rs114213299	A	G	A	Sox3.mouse_HMG_2	11	1	-	1.0647441418519985	-5.619630057608338	CAGCAATGGGATTGCTG
chr10	115858197	115858198	chr10:115858198:C:T	rs10787607	C	T	c	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr10	115957897	115957898	chr10:115957898:T:C	rs7087751	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr10	116004616	116004617	chr10:116004617:C:T	rs180653	C	T	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr10	116101179	116101180	chr10:116101180:G:C	rs2694779	G	C	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr10	117227237	117227238	chr10:117227238:T:C	rs17095936	T	C	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr10	117271866	117271867	chr10:117271867:T:C	rs2244375	T	C	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr10	117436738	117436739	chr10:117436739:C:A	rs2794424	C	A	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr10	117530063	117530064	chr10:117530064:C:G	rs11593815	C	G	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr10	117663381	117663382	chr10:117663382:G:T	rs12773399	G	T	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr10	117740969	117740970	chr10:117740970:G:A	rs72829835	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr10	117775444	117775445	chr10:117775445:A:G	rs4752105	A	G	A	Sox3.mouse_HMG_2	2	1	-	8.0187632207576	1.6518659142318588	GCTTAATGGTATTGAGA
chr10	118374409	118374410	chr10:118374410:G:T	rs10886226	G	T	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr10	118384825	118384826	chr10:118384826:C:T	rs7083887	C	T	C	Sox3.mouse_HMG_2	3	1	+	3.701513764731663	-1.155342110490559	GAGCAGTGTCATTGACT
chr10	118577766	118577767	chr10:118577767:T:C	rs1766241	T	C	t	Sox3.mouse_HMG_2	11	1	-	3.4004285743644203	7.971912702697704	TGTCAATGCCAATGGAT
chr10	118701800	118701801	chr10:118701801:C:G	rs4752189	C	G	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr10	118807408	118807409	chr10:118807409:A:G	rs7902478	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr10	118812119	118812120	chr10:118812120:A:G	rs11198623	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr10	118871096	118871097	chr10:118871097:T:C	rs116203520	T	C	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr10	118932382	118932383	chr10:118932383:G:A	rs148239393	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr10	118961650	118961651	chr10:118961651:T:A	rs10886350	T	A	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr10	118961667	118961668	chr10:118961668:C:T	rs80078739	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr10	119212070	119212071	chr10:119212071:A:G	rs116523361	A	G	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr10	119218366	119218367	chr10:119218367:A:C	chr10:119218367:A:C	A	C	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr10	119218402	119218403	chr10:119218403:A:C	chr10:119218403:A:C	A	C	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr10	119267806	119267807	chr10:119267807:C:T	rs79383846	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr10	119342246	119342247	chr10:119342247:T:C	rs291974	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr10	119342255	119342256	chr10:119342256:T:G	rs910169376	T	G	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr10	119429619	119429620	chr10:119429620:A:G	rs867759	A	G	A	Sox3.mouse_HMG_2	2	1	-	2.6190866515483777	-3.7478106549773655	CATTTATGACATTGAAT
chr10	119480966	119480967	chr10:119480967:C:T	rs11198958	C	T	C	Sox3.mouse_HMG_2	15	1	-	5.433244999265431	5.866982450526772	AAACAATGGCAGTGGGG
chr10	119480980	119480981	chr10:119480981:T:C	rs36097989	T	C	T	Sox3.mouse_HMG_2	1	1	-	5.433244999265431	3.4268570572459742	AAACAATGGCAGTGGGG
chr10	119480982	119480983	chr10:119480983:C:G	rs2039486	C	G	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr10	120039257	120039258	chr10:120039258:G:C	rs80090331	G	C	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr10	120390608	120390609	chr10:120390609:C:T	rs7073577	C	T	C	Sox3.mouse_HMG_2	3	1	+	9.514651317933778	4.657795442711553	GATCAATGCCAATGAAT
chr10	120423612	120423613	chr10:120423613:C:T	rs78251521	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	120634701	120634702	chr10:120634702:A:C	rs10886730	A	C	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr10	120638121	120638122	chr10:120638122:T:C	rs10886732	T	C	T	Sox3.mouse_HMG_2	9	1	+	3.386556059376712	2.693903516504753	TCACAATGCTGGTGATT
chr10	120735722	120735723	chr10:120735723:A:G	rs12413652	A	G	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr10	120800180	120800181	chr10:120800181:T:G	rs148141959	T	G	T	Sox3.mouse_HMG_2	16	1	+	2.3115737375787972	1.9478520479448516	CTTCAGTGAGATTGATT
chr10	120941991	120941992	chr10:120941992:G:A	rs4751815	G	A	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr10	121139541	121139542	chr10:121139542:G:T	rs75353688	G	T	g	Sox3.mouse_HMG_2	8	1	-	3.7996767857515343	3.0216704341584943	CTTCAGTGCTAGTGGTA
chr10	121524189	121524190	chr10:121524190:C:A	rs2912767	C	A	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr10	122022953	122022954	chr10:122022954:A:G	rs2461219	A	G	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr10	122047724	122047725	chr10:122047725:C:T	rs3981027	C	T	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr10	122112283	122112284	chr10:122112284:G:A	rs4751872	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr10	122112315	122112316	chr10:122112316:A:T	rs4752647	A	T	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr10	122112325	122112326	chr10:122112326:A:G	rs78490550	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr10	122275673	122275674	chr10:122275674:T:G	rs11817245	T	G	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr10	122421171	122421172	chr10:122421172:A:G	rs190404754	A	G	A	Sox3.mouse_HMG_2	4	1	+	5.377707351793026	-1.0115740825848636	AGTGAATGTCATTGGTA
chr10	122475670	122475671	chr10:122475671:G:A	rs79057333	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr10	122475709	122475710	chr10:122475710:T:G	rs72834453	T	G	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr10	122619751	122619752	chr10:122619752:A:G	rs113681994	A	G	A	Sox3.mouse_HMG_2	15	1	+	2.0939401448175876	1.6602026935562464	AAGCAATGTCAGTGCAG
chr10	122878587	122878588	chr10:122878588:G:A	rs35494281	G	A	G	Sox3.mouse_HMG_2	11	1	-	3.0309734791299436	9.71534767859028	TATCAATTGTCCTGATG
chr10	123194276	123194277	chr10:123194277:A:G	rs556890279	A	G	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	123230192	123230193	chr10:123230193:A:G	rs562407673	A	G	A	Sox3.mouse_HMG_2	4	1	+	2.7730195694871624	-3.6162618648907263	CCACAATTATTTTGATA
chr10	123622019	123622020	chr10:123622020:C:T	rs78246633	C	T	C	Sox3.mouse_HMG_2	11	1	-	5.8837882382255575	1.3123041098922714	TATCAATCCTAGTGACT
chr10	123842458	123842459	chr10:123842459:G:A	rs17679897	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr10	123916504	123916505	chr10:123916505:A:G	rs17618205	A	G	G	Sox3.mouse_HMG_2	6	1	-	12.520531537399062	6.13125010302117	GGTCAATGGCAGTGAAT
chr10	124047815	124047816	chr10:124047816:G:A	rs118132998	G	A	G	Sox3.mouse_HMG_2	7	1	+	4.9474900937980815	-1.6813314012899752	TTTCATTGTCAGTGAAT
chr10	124201080	124201081	chr10:124201081:C:T	rs879119690	C	T	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr10	124232853	124232854	chr10:124232854:A:G	rs12266204	A	G	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr10	124235502	124235503	chr10:124235503:C:T	rs3884581	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr10	124306992	124306993	chr10:124306993:C:T	rs114870889	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr10	124342823	124342824	chr10:124342824:A:T	rs569163330	A	T	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr10	124365655	124365656	chr10:124365656:A:C	rs2674328	A	C	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr10	124374989	124374990	chr10:124374990:G:C	rs7080814	G	C	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr10	124449333	124449334	chr10:124449334:T:G	rs150275338	T	G	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr10	124992057	124992058	chr10:124992058:A:G	rs61870304	A	G	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr10	125025596	125025597	chr10:125025597:C:T	rs10444192	C	T	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr10	125025599	125025600	chr10:125025600:C:T	rs72830850	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr10	125117193	125117194	chr10:125117194:G:A	rs74163343	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr10	125145611	125145612	chr10:125145612:C:T	rs139121751	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr10	125235829	125235830	chr10:125235830:A:G	rs61869235	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr10	125270913	125270914	chr10:125270914:C:T	rs7894598	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	125531418	125531419	chr10:125531419:G:A	rs912526018	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr10	125795664	125795665	chr10:125795665:A:G	rs2281957	A	G	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr10	126046957	126046958	chr10:126046958:C:G	rs1459712	C	G	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr10	126117067	126117068	chr10:126117068:G:A	rs1278391	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr10	126144992	126144993	chr10:126144993:C:T	rs11244837	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr10	126240404	126240405	chr10:126240405:A:G	rs4962524	A	G	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr10	126352269	126352270	chr10:126352270:T:C	rs11597735	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr10	126423482	126423483	chr10:126423483:C:T	rs35124467	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr10	126476694	126476695	chr10:126476695:G:T	rs7898677	G	T	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr10	126598061	126598062	chr10:126598062:A:G	rs2804424	A	G	C	Sox3.mouse_HMG_2	12	1	-	3.6869675309925025	-2.3639996069383145	GAGGAATGCCATTGAAA
chr10	126692189	126692190	chr10:126692190:G:A	rs12246079	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr10	126900454	126900455	chr10:126900455:A:G	rs55952399	A	G	A	Sox3.mouse_HMG_2	11	1	-	5.472684146988966	-1.2116900524713703	AATCAGTTTCATTGAGC
chr10	126908931	126908932	chr10:126908932:C:G	rs139057052	C	G	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr10	126945603	126945604	chr10:126945604:C:T	rs36174218	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr10	126950473	126950474	chr10:126950474:T:C	rs934756832	T	C	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr10	127022883	127022884	chr10:127022884:A:G	rs2275535	A	G	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr10	127022910	127022911	chr10:127022911:C:T	rs2275536	C	T	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr10	127052010	127052011	chr10:127052011:C:T	rs9418724	C	T	C	Sox3.mouse_HMG_2	3	1	+	5.182710577617936	0.3258547023957145	CTTCGATTTTATTGTTT
chr10	127386055	127386056	chr10:127386056:T:G	rs7090055	T	G	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr10	127418393	127418394	chr10:127418394:T:C	rs2229600	T	C	C	Sox3.mouse_HMG_2	12	1	+	3.1190600286080583	-2.9319071093227587	GGAGAATGCCATTGAGA
chr10	127449750	127449751	chr10:127449751:G:C	rs55798271	G	C	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr10	127449779	127449780	chr10:127449780:T:A	rs11018104	T	A	T	Sox3.mouse_HMG_2	1	1	-	5.9650945374953555	3.2698709784420585	GATCAATGAGAGTGACA
chr10	127450874	127450875	chr10:127450875:C:G	rs952199	C	G	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr10	127549086	127549087	chr10:127549087:T:G	rs7894110	T	G	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr10	128095853	128095854	chr10:128095854:A:G	rs11599823	A	G	G	Sox3.mouse_HMG_2	4	1	+	5.3506566893736345	-1.038624745004254	ACTCAATGCCAGTAATA
chr10	128095861	128095862	chr10:128095862:T:G	rs6482657	T	G	G	Sox3.mouse_HMG_2	12	1	+	5.3506566893736345	-1.0359319832980807	ACTCAATGCCAGTAATA
chr10	128296099	128296100	chr10:128296100:G:A	rs11016163	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr10	128377497	128377498	chr10:128377498:T:C	rs11016203	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr10	128398965	128398966	chr10:128398966:A:T	rs11016230	A	T	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr10	128473820	128473821	chr10:128473821:A:G	rs12411816	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr10	128521482	128521483	chr10:128521483:C:A	rs10764785	C	A	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr10	128633052	128633053	chr10:128633053:G:A	rs11016397	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr10	129061801	129061802	chr10:129061802:G:A	rs77864537	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr10	129121768	129121769	chr10:129121769:C:T	rs944786934	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr10	129121769	129121770	chr10:129121770:G:A	rs12774177	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr10	129121807	129121808	chr10:129121808:C:G	rs10829576	C	G	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr10	129139984	129139985	chr10:129139985:A:G	rs60984334	A	G	a	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr10	129192709	129192710	chr10:129192710:A:G	rs73388493	A	G	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr10	129323544	129323545	chr10:129323545:C:T	rs72831461	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr10	129510307	129510308	chr10:129510308:C:G	rs1537691	C	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr10	129587145	129587146	chr10:129587146:G:A	rs80273924	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr10	129726562	129726563	chr10:129726563:G:A	rs6482753	G	A	G	Sox3.mouse_HMG_2	7	1	+	4.858105180724054	-1.7707163143640028	GAACAGTGGCATTGGTG
chr10	129757378	129757379	chr10:129757379:C:T	chr10:129757379:C:T	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr10	129946902	129946903	chr10:129946903:T:C	rs10829664	T	C	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr10	129946912	129946913	chr10:129946913:C:T	rs150599731	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr10	129956177	129956178	chr10:129956178:C:T	rs77059422	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr10	130172401	130172402	chr10:130172402:G:C	rs1016374	G	C	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr10	130353913	130353914	chr10:130353914:C:T	rs12569655	C	T	C	Sox3.mouse_HMG_2	13	1	-	5.275658385793069	-0.7759801183932424	TATCCATGTCATCGATT
chr10	130369033	130369034	chr10:130369034:A:G	rs60104240	A	G	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr10	130478193	130478194	chr10:130478194:C:T	rs12762336	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr10	130484382	130484383	chr10:130484383:T:C	rs2484214	T	C	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr10	130493703	130493704	chr10:130493704:A:G	rs4751209	A	G	a	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr10	130516899	130516900	chr10:130516900:T:C	rs7921937	T	C	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr10	130516907	130516908	chr10:130516908:C:A	rs12359852	C	A	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr10	130750519	130750520	chr10:130750520:C:G	rs10829786	C	G	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr10	130772258	130772259	chr10:130772259:C:T	rs1176406	C	T	C	Sox3.mouse_HMG_2	15	1	-	1.4338587960331421	1.8675962472944834	GCTGAATGGCAGTGGGA
chr10	130772266	130772267	chr10:130772267:C:A	rs1176407	C	A	C	Sox3.mouse_HMG_2	7	1	-	1.4338587960331421	0.30796758218789627	GCTGAATGGCAGTGGGA
chr10	130816193	130816194	chr10:130816194:C:T	rs72845165	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr10	130847783	130847784	chr10:130847784:G:A	rs7076678	G	A	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr10	130878824	130878825	chr10:130878825:T:C	rs1703688	T	C	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr10	131011258	131011259	chr10:131011259:C:T	rs80035223	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	131027825	131027826	chr10:131027826:A:G	rs7904315	A	G	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	131080076	131080077	chr10:131080077:A:G	rs79047495	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr10	131122980	131122981	chr10:131122981:G:C	rs12415526	G	C	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr10	131136143	131136144	chr10:131136144:C:G	rs56859243	C	G	G	Sox3.mouse_HMG_2	10	1	-	4.1070948947920725	4.1070948947920725	TATCAATGGTGTTGGCT
chr10	131170129	131170130	chr10:131170130:C:A	rs2918152	C	A	A	Sox3.mouse_HMG_2	13	1	-	4.127585905536942	-2.25967413339027	AATCAATGACTGTGAAA
chr10	131170137	131170138	chr10:131170138:T:C	rs7912888	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.127585905536942	-2.2616955288409475	AATCAATGACTGTGAAA
chr10	131244715	131244716	chr10:131244716:A:C	rs73398434	A	C	C	Sox3.mouse_HMG_2	5	1	+	5.267844743424691	-1.6402304843683657	GCTCAAAGCCATTGAAA
chr10	131244743	131244744	chr10:131244744:A:G	rs72841353	A	G	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr10	131258589	131258590	chr10:131258590:A:G	rs2944507	A	G	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr10	131291023	131291024	chr10:131291024:G:C	rs1530066	G	C	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr10	131326697	131326698	chr10:131326698:A:G	rs4609515	A	G	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr10	131332600	131332601	chr10:131332601:A:G	rs11017884	A	G	A	Sox3.mouse_HMG_2	10	1	+	4.661759730190084	-2.2469950491251347	ATTTAATTACAGTGATA
chr10	131539618	131539619	chr10:131539619:G:A	rs11018026	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr10	131579085	131579086	chr10:131579086:A:G	rs75002802	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr10	131581163	131581164	chr10:131581164:A:G	rs11018076	A	G	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr10	131641197	131641198	chr10:131641198:A:T	rs72853635	A	T	a	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr10	131674180	131674181	chr10:131674181:C:G	rs12573695	C	G	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr10	131731481	131731482	chr10:131731482:C:T	rs7905678	C	T	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr10	132109946	132109947	chr10:132109947:C:A	chr10:132109947:C:A	C	A	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr10	132109959	132109960	chr10:132109960:G:A	rs78159143	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr10	132140734	132140735	chr10:132140735:C:T	rs9733882	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr10	132377500	132377501	chr10:132377501:A:C	rs4443996	A	C	C	Sox3.mouse_HMG_2	6	1	-	6.232704239562163	-0.675370988230892	CATCAATGGCAGGGAAC
chr10	132505324	132505325	chr10:132505325:G:T	rs377500039	G	T	G	Sox3.mouse_HMG_2	7	1	+	3.035666154850771	1.909774941005525	GATCAGCGCCAGTGATA
chr10	132505654	132505655	chr10:132505655:G:T	rs113200869	G	T	-	Sox3.mouse_HMG_2	7	1	+	3.035666154850771	1.909774941005525	GATCAGCGCCAGTGATA
chr10	132505786	132505787	chr10:132505787:T:G	rs36169958	T	G	-	Sox3.mouse_HMG_2	7	1	+	1.909774941005525	3.035666154850771	GATCAGCTCCAGTGATA
chr10	132774233	132774234	chr10:132774234:A:G	rs2803982	A	G	G	Sox3.mouse_HMG_2	10	1	+	0.3411537683230618	-6.567601010992159	CAGCATTGCCAGTGGTG
chr10	132933748	132933749	chr10:132933749:C:T	rs61863096	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr10	132973707	132973708	chr10:132973708:C:G	rs11146071	C	G	C	Sox3.mouse_HMG_2	14	1	-	1.4969308989391152	-1.2175314488779285	GGTCAAGGGCAGTGGGG
chr10	133481515	133481516	chr10:133481516:C:G	rs187851826	C	G	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr11	316930	316931	chr11:316931:T:A	rs73398508	T	A	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr11	464290	464291	chr11:464291:C:T	rs6598017	C	T	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr11	511579	511580	chr11:511580:C:T	rs3993797	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr11	711205	711206	chr11:711206:G:T	rs373368595	G	T	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr11	737406	737407	chr11:737407:C:T	rs77425439	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr11	889408	889409	chr11:889409:C:T	rs116814669	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr11	1017595	1017596	chr11:1017596:T:G	rs201522029	T	G	-	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr11	1090035	1090036	chr11:1090036:T:C	rs10902088	T	C	C	Sox3.mouse_HMG_2	6	1	+	1.688171238403016	-4.701110195974874	CATCAATGGCATCCACT
chr11	1308607	1308608	chr11:1308608:T:C	rs5743856	T	C	t	Sox3.mouse_HMG_2	11	1	+	4.097996931987565	-2.5863772674727707	TATTAATGCTATAGAAG
chr11	1351703	1351704	chr11:1351704:C:T	rs12290143	C	T	c	Sox3.mouse_HMG_2	7	1	-	3.316175042607938	-3.3126464524801182	TCTCAAAGGCAGTGAGG
chr11	1351705	1351706	chr11:1351706:T:C	rs12294337	T	C	N	Sox3.mouse_HMG_2	5	1	-	3.316175042607938	-3.0731063917699526	TCTCAAAGGCAGTGAGG
chr11	1351705	1351706	chr11:1351706:T:G	chr11:1351706:T:G	T	G	N	Sox3.mouse_HMG_2	5	1	-	3.316175042607938	-3.5919001851851196	TCTCAAAGGCAGTGAGG
chr11	1356243	1356244	chr11:1356244:T:C	rs75054689	T	C	t	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr11	1362976	1362977	chr11:1362977:A:G	rs6421029	A	G	g	Sox3.mouse_HMG_2	10	1	+	4.781395872696649	-2.1273589066185696	TGTCACTTACAGTGATT
chr11	1589530	1589531	chr11:1589531:T:C	rs11035024	T	C	-	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr11	1640096	1640097	chr11:1640097:C:T	rs78651552	C	T	c	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr11	1693233	1693234	chr11:1693234:G:A	rs16927505	G	A	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr11	1736772	1736773	chr11:1736773:G:C	rs1040480641	G	C	G	Sox3.mouse_HMG_2	8	1	-	5.166512926217175	5.607296959368632	TATCCATTCCATTGACT
chr11	1859840	1859841	chr11:1859841:G:A	rs587074	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr11	1888557	1888558	chr11:1888558:C:T	rs77413927	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr11	1908771	1908772	chr11:1908772:G:T	rs758647496	G	T	g	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr11	2213568	2213569	chr11:2213569:G:A	rs918657208	G	A	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr11	2298124	2298125	chr11:2298125:C:T	rs2244891	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr11	2410167	2410168	chr11:2410168:C:T	rs569145555	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr11	2521668	2521669	chr11:2521669:G:T	rs73419593	G	T	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr11	2521690	2521691	chr11:2521691:C:T	rs73419595	C	T	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr11	2542403	2542404	chr11:2542404:C:T	rs61509816	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr11	2542546	2542547	chr11:2542547:C:T	rs111405535	C	T	C	Sox3.mouse_HMG_2	11	1	-	5.619383964832514	1.0478998364992298	TCTCAATTGTGGTGATG
chr11	2760765	2760766	chr11:2760766:A:G	rs7938536	A	G	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr11	2799197	2799198	chr11:2799198:G:A	rs7112108	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr11	2952187	2952188	chr11:2952188:G:A	rs149398418	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr11	3052419	3052420	chr11:3052420:T:C	rs11827189	T	C	T	Sox3.mouse_HMG_2	9	1	+	7.172430085840157	6.479777542968195	TATTAATGTTATTGTAA
chr11	3207242	3207243	chr11:3207243:T:A	rs11025941	T	A	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr11	3626297	3626298	chr11:3626298:A:C	rs17173897	A	C	N	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	3626299	3626300	chr11:3626300:C:G	rs17173896	C	G	c	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr11	3736997	3736998	chr11:3736998:A:G	rs276909	A	G	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr11	3801342	3801343	chr11:3801343:T:G	rs10767606	T	G	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr11	3904674	3904675	chr11:3904675:T:C	rs13328911	T	C	T	Sox3.mouse_HMG_2	15	1	+	2.412170392740516	-1.36762902476528	GAACAAGGGTAGTGGTC
chr11	4682885	4682886	chr11:4682886:G:A	rs79815978	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr11	4761304	4761305	chr11:4761305:T:G	rs78425414	T	G	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr11	5059003	5059004	chr11:5059004:T:C	rs2445333	T	C	.	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr11	5196478	5196479	chr11:5196479:G:A	rs12804890	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr11	5362481	5362482	chr11:5362482:A:G	rs79793436	A	G	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr11	5362482	5362483	chr11:5362483:T:C	rs4910769	T	C	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr11	5677724	5677725	chr11:5677725:A:G	rs10769173	A	G	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr11	5701415	5701416	chr11:5701416:C:T	rs4604919	C	T	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr11	5815556	5815557	chr11:5815557:T:A	rs11039135	T	A	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr11	5815608	5815609	chr11:5815609:A:C	rs10838673	A	C	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr11	5982231	5982232	chr11:5982232:C:T	rs1006302563	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr11	6124402	6124403	chr11:6124403:G:A	rs72900422	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr11	6289441	6289442	chr11:6289442:T:C	rs61876737	T	C	T	Sox3.mouse_HMG_2	4	1	-	4.947652772914147	-1.4416286614637421	GCTCAATTTTTTTGTTT
chr11	6402399	6402400	chr11:6402400:G:C	rs2075583	G	C	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr11	6602950	6602951	chr11:6602951:T:C	rs4758438	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr11	6609310	6609311	chr11:6609311:C:T	rs140322345	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr11	6707622	6707623	chr11:6707623:C:T	rs12361973	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr11	6747423	6747424	chr11:6747424:A:G	rs10839610	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr11	6868904	6868905	chr11:6868905:A:G	rs4300376	A	G	A	Sox3.mouse_HMG_2	10	1	+	3.7849059212860157	-3.1238488580292034	TCTTAATGCTAATGATG
chr11	6969084	6969085	chr11:6969085:G:A	rs181587370	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr11	7015978	7015979	chr11:7015979:G:A	rs10839689	G	A	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr11	7015984	7015985	chr11:7015985:C:T	rs10839690	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr11	7168600	7168601	chr11:7168601:A:G	rs11041227	A	G	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr11	7309472	7309473	chr11:7309473:A:G	rs11041306	A	G	A	Sox3.mouse_HMG_2	6	1	-	8.603147413389564	2.2138659790116746	GGACAATGACATTGAGG
chr11	7857720	7857721	chr11:7857721:C:G	rs7126830	C	G	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr11	7909830	7909831	chr11:7909831:T:G	rs539539434	T	G	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr11	7918414	7918415	chr11:7918415:A:G	rs80118993	A	G	A	Sox3.mouse_HMG_2	2	1	-	2.784863442472758	-3.582033864052986	TTTTAATGGTAGTGCTG
chr11	8012451	8012452	chr11:8012452:T:C	rs11820764	T	C	C	Sox3.mouse_HMG_2	7	1	+	1.9932673611295544	-3.5096629201132568	CATCAAATCTAGGGATG
chr11	8035036	8035037	chr11:8035037:C:T	rs190108457	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr11	8051688	8051689	chr11:8051689:C:T	rs7949880	C	T	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr11	8065367	8065368	chr11:8065368:T:C	rs55961435	T	C	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr11	8233860	8233861	chr11:8233861:C:A	rs2168101	C	A	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr11	8350952	8350953	chr11:8350953:G:A	rs6578961	G	A	G	Sox3.mouse_HMG_2	7	1	+	5.367977223558258	-1.260844271529799	GAACAATGACAGGGATA
chr11	8566847	8566848	chr11:8566848:T:C	rs531255716	T	C	t	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr11	8681027	8681028	chr11:8681028:C:T	rs117631225	C	T	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr11	8767617	8767618	chr11:8767618:G:C	rs56210063	G	C	G	Sox3.mouse_HMG_2	7	1	+	1.8337045662986426	-4.7951169287894135	AGGCAATGACAGTGGTC
chr11	8868082	8868083	chr11:8868083:T:C	rs2653567	T	C	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	8912305	8912306	chr11:8912306:T:G	rs2742519	T	G	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr11	8912342	8912343	chr11:8912343:T:G	rs79634295	T	G	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr11	9012371	9012372	chr11:9012372:G:A	chr11:9012372:G:A	G	A	C	Sox3.mouse_HMG_2	7	1	+	1.1296104219924896	-5.499211073095566	TAGCCATGCTAGTGAGG
chr11	9021021	9021022	chr11:9021022:T:C	rs1367	T	C	T	Sox3.mouse_HMG_2	9	1	+	4.850733531021121	4.1580809881491625	GAACATTTGTATTGAGT
chr11	9023219	9023220	chr11:9023220:G:A	rs932287	G	A	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr11	9253371	9253372	chr11:9253372:G:A	rs55962227	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr11	9357440	9357441	chr11:9357441:T:G	rs1579065	T	G	T	Sox3.mouse_HMG_2	10	1	-	2.0122350552032335	-4.896519724111987	TATCAAAGGCAGTGTGG
chr11	9401993	9401994	chr11:9401994:C:T	rs12795344	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr11	9567113	9567114	chr11:9567114:C:T	rs75967252	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr11	9600866	9600867	chr11:9600867:G:A	rs11042440	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr11	9702921	9702922	chr11:9702922:A:G	rs2572942	A	G	G	Sox3.mouse_HMG_2	2	1	+	4.818100609543009	2.945882718646655	TAACAGTTTTATTGAGA
chr11	9936930	9936931	chr11:9936931:T:C	rs11042557	T	C	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr11	10207299	10207300	chr11:10207300:G:A	rs1867135	G	A	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr11	10244329	10244330	chr11:10244330:G:A	rs72850420	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr11	10439926	10439927	chr11:10439927:G:C	rs11042804	G	C	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr11	10594828	10594829	chr11:10594829:A:G	rs76591464	A	G	A	Sox3.mouse_HMG_2	16	1	-	4.7505154630440405	3.14752241338359	GCTAAATGATATTGGTT
chr11	10610704	10610705	chr11:10610705:A:G	rs964426	A	G	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr11	10742997	10742998	chr11:10742998:A:C	rs10840484	A	C	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr11	10796304	10796305	chr11:10796305:A:C	rs142260364	A	C	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr11	10885884	10885885	chr11:10885885:T:A	rs10840505	T	A	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr11	10892350	10892351	chr11:10892351:T:C	rs7105644	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr11	10896731	10896732	chr11:10896732:A:C	rs2896567	A	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr11	11176703	11176704	chr11:11176704:T:C	rs2655103	T	C	C	Sox3.mouse_HMG_2	6	1	+	4.310765986627024	-2.078515447750865	GTGCAATGGCATAGATT
chr11	11247469	11247470	chr11:11247470:G:T	rs188318933	G	T	G	Sox3.mouse_HMG_2	2	1	-	2.43757226842527	5.522812799167479	GACCATTTTTATTGAAA
chr11	11451539	11451540	chr11:11451540:G:A	rs11827435	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr11	11451541	11451542	chr11:11451542:A:G	rs11822766	A	G	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr11	11659387	11659388	chr11:11659388:G:A	rs7480726	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr11	11783619	11783620	chr11:11783620:G:A	rs28713685	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr11	11783663	11783664	chr11:11783664:G:A	rs2124231	G	A	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr11	11856830	11856831	chr11:11856831:G:A	rs72856345	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr11	11987592	11987593	chr11:11987593:T:C	rs977792	T	C	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr11	11993564	11993565	chr11:11993565:A:G	rs6485351	A	G	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr11	12030202	12030203	chr11:12030203:T:C	rs79681203	T	C	T	Sox3.mouse_HMG_2	6	1	+	5.7652312995136406	-0.6240501348642491	AATGAATGGCAGTGGTT
chr11	12123336	12123337	chr11:12123337:T:C	rs922829035	T	C	T	Sox3.mouse_HMG_2	15	1	+	2.54100841093712	-1.2387910065686756	CATCAATGTCCATGGTT
chr11	12138369	12138370	chr11:12138370:T:C	chr11:12138370:T:C	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr11	12147753	12147754	chr11:12147754:G:A	rs4644628	G	A	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr11	12391382	12391383	chr11:12391383:T:C	rs114951396	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr11	12512340	12512341	chr11:12512341:T:C	rs34460588	T	C	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr11	12525264	12525265	chr11:12525265:A:G	rs1426587	A	G	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr11	12565842	12565843	chr11:12565843:T:C	rs67512993	T	C	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr11	12973583	12973584	chr11:12973584:G:C	rs61878838	G	C	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr11	12997472	12997473	chr11:12997473:A:G	chr11:12997473:A:G	A	G	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr11	13000893	13000894	chr11:13000894:T:G	rs4320934	T	G	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr11	13000903	13000904	chr11:13000904:A:T	rs4434985	A	T	A	Sox3.mouse_HMG_2	11	1	-	4.341751171102418	-1.6102551346446923	CCTTAATTATATTGAGC
chr11	13000924	13000925	chr11:13000925:G:C	rs4328193	G	C	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr11	13070865	13070866	chr11:13070866:G:C	rs11022630	G	C	g	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr11	13210844	13210845	chr11:13210845:T:G	rs11022706	T	G	T	Sox3.mouse_HMG_2	12	1	+	7.347869513262333	0.9612808405906172	TATCAGTGGCAGTGAAT
chr11	13230493	13230494	chr11:13230494:T:C	rs12795870	T	C	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr11	13257894	13257895	chr11:13257895:A:G	rs75606758	A	G	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr11	13291224	13291225	chr11:13291225:C:T	rs7104985	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	13562236	13562237	chr11:13562237:G:A	rs10500786	G	A	-	Sox3.mouse_HMG_2	8	1	+	10.58076829310422	9.361977908359725	GACCAATGGTAGTGATA
chr11	13908682	13908683	chr11:13908683:C:G	rs1910391	C	G	C	Sox3.mouse_HMG_2	0	1	-	3.6380061908109615	3.3333726732867737	GATCATTGTCAGTGGCT
chr11	13940709	13940710	chr11:13940710:G:C	rs149242085	G	C	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr11	14044938	14044939	chr11:14044939:G:A	rs10832169	G	A	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr11	14191663	14191664	chr11:14191664:G:C	rs3935919	G	C	G	Sox3.mouse_HMG_2	8	1	-	3.2774653333113446	3.718249366462802	TCACAATTCTCTTGATG
chr11	14191682	14191683	chr11:14191683:A:G	rs7480396	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr11	14255093	14255094	chr11:14255094:G:A	rs782117476	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr11	14611943	14611944	chr11:14611944:G:A	rs11023274	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr11	14614769	14614770	chr11:14614770:T:G	rs10741651	T	G	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	14655779	14655780	chr11:14655780:T:A	rs55732754	T	A	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr11	15275149	15275150	chr11:15275150:C:T	rs72860479	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr11	15532811	15532812	chr11:15532812:A:G	rs11023623	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.447464881977481	-3.9418165524004096	GCTCCATGACATTGGTC
chr11	15548499	15548500	chr11:15548500:A:G	rs10766266	A	G	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr11	15751320	15751321	chr11:15751321:T:A	rs11608200	T	A	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr11	15800419	15800420	chr11:15800420:C:A	rs113162018	C	A	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr11	16632385	16632386	chr11:16632386:T:C	rs560309121	T	C	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr11	16632423	16632424	chr11:16632424:T:C	rs72632980	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr11	16804753	16804754	chr11:16804754:C:T	rs76698002	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr11	16959665	16959666	chr11:16959666:A:G	rs17773381	A	G	A	Sox3.mouse_HMG_2	2	1	+	3.333784819555551	1.461566928659198	CCACAGTGGTATTGAAA
chr11	17009227	17009228	chr11:17009228:T:C	rs4757490	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.6844648628273828	-4.704816571550508	GTTCAATGATTTTGCTG
chr11	17021250	17021251	chr11:17021251:A:T	rs142669360	A	T	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr11	17548887	17548888	chr11:17548888:T:C	rs1859822	T	C	T	Sox3.mouse_HMG_2	2	1	+	4.304121356284343	-2.062775950241401	TTTCAATTTTTTTGGTA
chr11	18255267	18255268	chr11:18255268:G:A	rs12419567	G	A	g	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr11	18803122	18803123	chr11:18803123:C:G	rs4601750	C	G	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr11	19108150	19108151	chr11:19108151:A:C	rs74852703	A	C	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr11	19352674	19352675	chr11:19352675:T:C	rs1354268	T	C	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr11	19447221	19447222	chr11:19447222:A:C	rs4756999	A	C	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr11	19665939	19665940	chr11:19665940:A:G	rs139356958	A	G	a	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr11	19719985	19719986	chr11:19719986:G:A	rs1004832110	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr11	19899746	19899747	chr11:19899747:T:C	rs10833189	T	C	T	Sox3.mouse_HMG_2	12	1	+	10.079748919746388	4.028781781815571	TATCATTTGTATTGATT
chr11	19933647	19933648	chr11:19933648:G:C	rs16937251	G	C	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr11	20008883	20008884	chr11:20008884:T:G	rs11606785	T	G	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr11	20027350	20027351	chr11:20027351:G:A	rs557890798	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr11	20188849	20188850	chr11:20188850:T:C	rs12272729	T	C	T	Sox3.mouse_HMG_2	12	1	+	2.409747470820664	-3.6412196671101524	TGTGAATGACAGTGACA
chr11	20365515	20365516	chr11:20365516:A:G	rs11025535	A	G	A	Sox3.mouse_HMG_2	0	1	+	4.211204513890409	5.907696807593071	AATAAATGTTCTTGATT
chr11	20368624	20368625	chr11:20368625:G:A	rs529137819	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr11	20484244	20484245	chr11:20484245:A:T	rs11025581	A	T	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	20954768	20954769	chr11:20954769:G:C	rs1400378	G	C	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr11	21476642	21476643	chr11:21476643:T:A	rs11026103	T	A	T	Sox3.mouse_HMG_2	1	1	-	2.0746220652515923	-0.6206014938017042	GATCACTCACAGTGATT
chr11	21632505	21632506	chr11:21632506:C:A	rs75141547	C	A	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr11	22085268	22085269	chr11:22085269:T:C	rs10833700	T	C	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr11	22343197	22343198	chr11:22343198:G:A	rs2246710	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr11	22343211	22343212	chr11:22343212:C:T	rs2278751	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr11	22348939	22348940	chr11:22348940:T:A	rs7129149	T	A	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr11	22509141	22509142	chr11:22509142:A:T	rs58261820	A	T	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr11	22625903	22625904	chr11:22625904:C:G	rs142028189	C	G	a	Sox3.mouse_HMG_2	3	1	+	5.387908797322102	-0.662610512567195	CTGCAATGCTATTGGTC
chr11	22876157	22876158	chr11:22876158:A:G	rs12284600	A	G	a	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr11	22876171	22876172	chr11:22876172:A:G	rs12284602	A	G	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr11	23267231	23267232	chr11:23267232:T:C	rs67449872	T	C	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr11	23455858	23455859	chr11:23455859:T:C	rs72873504	T	C	T	Sox3.mouse_HMG_2	10	1	-	6.765899467981873	-0.14285531133334756	GATCAAGGACATTGGTT
chr11	23475318	23475319	chr11:23475319:G:A	rs7925971	G	A	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr11	23590995	23590996	chr11:23590996:G:A	rs11027389	G	A	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr11	24234619	24234620	chr11:24234620:C:G	rs2068454	C	G	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr11	24549309	24549310	chr11:24549310:C:T	rs2403959	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr11	24625031	24625032	chr11:24625032:C:A	rs10767223	C	A	A	Sox3.mouse_HMG_2	8	1	-	2.6084997334404907	3.422137666444703	TGTCAATGGCATTTGGG
chr11	24635118	24635119	chr11:24635119:C:A	rs56108236	C	A	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr11	24770572	24770573	chr11:24770573:G:C	rs2716538	G	C	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr11	24858061	24858062	chr11:24858062:G:T	rs10834508	G	T	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr11	24858075	24858076	chr11:24858076:G:C	rs2403985	G	C	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr11	24858104	24858105	chr11:24858105:G:A	rs7122346	G	A	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr11	25057615	25057616	chr11:25057616:C:T	rs1446173	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr11	25068718	25068719	chr11:25068719:A:G	rs1374134	A	G	a	Sox3.mouse_HMG_2	11	1	-	5.381792125067035	-1.3025820743933014	CAACAATTACATTGTAA
chr11	25163700	25163701	chr11:25163701:G:A	rs10767315	G	A	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr11	25674914	25674915	chr11:25674915:T:G	rs1602916	T	G	T	Sox3.mouse_HMG_2	4	1	-	4.98737028679209	-1.9207049410009662	ATTCAATTTTTTTGAAT
chr11	25775326	25775327	chr11:25775327:C:T	rs4445592	C	T	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr11	25910692	25910693	chr11:25910693:A:G	rs2218913	A	G	A	Sox3.mouse_HMG_2	1	1	+	2.8057651205102645	0.7993771784908061	TATCAAGTATATTGGGT
chr11	26533824	26533825	chr11:26533825:C:T	rs293941	C	T	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr11	26533841	26533842	chr11:26533842:A:G	rs118102367	A	G	A	Sox3.mouse_HMG_2	4	1	-	4.079478513178506	4.079478513178506	TATCTATGTGAGTGATA
chr11	26851666	26851667	chr11:26851667:A:T	rs11819813	A	T	A	Sox3.mouse_HMG_2	3	1	-	5.670985136871325	3.6271707728346403	AACTAATTTTATTGATT
chr11	26992484	26992485	chr11:26992485:T:C	rs7106676	T	C	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr11	26992507	26992508	chr11:26992508:A:C	rs754279777	A	C	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr11	27213016	27213017	chr11:27213017:A:G	rs1442929	A	G	a	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr11	27557398	27557399	chr11:27557399:A:T	rs1013442	A	T	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr11	27935152	27935153	chr11:27935153:C:T	chr11:27935153:C:T	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr11	27935158	27935159	chr11:27935159:A:G	rs1270798049	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr11	28243709	28243710	chr11:28243710:A:G	rs138175268	A	G	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr11	28384212	28384213	chr11:28384213:A:G	rs78049516	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr11	28384223	28384224	chr11:28384224:G:C	rs7116476	G	C	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr11	28619873	28619874	chr11:28619874:G:A	rs146414822	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr11	28739542	28739543	chr11:28739543:G:A	rs72887575	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr11	28837064	28837065	chr11:28837065:T:C	rs9633860	T	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr11	28838874	28838875	chr11:28838875:A:T	rs61888343	A	T	A	Sox3.mouse_HMG_2	6	1	-	5.303515108918528	-1.6045601188745273	CATCACTGGTATTTATT
chr11	28963411	28963412	chr11:28963412:G:C	rs2959142	G	C	.	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr11	29125553	29125554	chr11:29125554:T:C	rs6484426	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr11	30206375	30206376	chr11:30206376:A:T	rs655183	A	T	A	Sox3.mouse_HMG_2	12	1	-	6.424351202594791	0.3733840646639743	CATCACTGATAGTGAAG
chr11	30451833	30451834	chr11:30451834:G:C	rs16920697	G	C	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr11	30458586	30458587	chr11:30458587:A:G	rs581277	A	G	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr11	30547163	30547164	chr11:30547164:A:G	rs12289767	A	G	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr11	30547184	30547185	chr11:30547185:C:T	rs12276680	C	T	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr11	30694138	30694139	chr11:30694139:T:C	rs61886037	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr11	30716031	30716032	chr11:30716032:G:A	rs292435	G	A	A	Sox3.mouse_HMG_2	9	1	-	0.868533889319801	1.56118643219176	GATCAAGGGCAGGGAAG
chr11	30919735	30919736	chr11:30919736:T:C	rs273607	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr11	31986836	31986837	chr11:31986837:G:A	rs224685	G	A	g	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr11	32052034	32052035	chr11:32052035:T:A	rs2745876	T	A	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr11	32069691	32069692	chr11:32069692:T:C	rs224608	T	C	C	Sox3.mouse_HMG_2	2	1	-	6.319284400005078	4.447066509108725	AAACAATGATATTTATT
chr11	32087927	32087928	chr11:32087928:A:G	rs75304329	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr11	32087930	32087931	chr11:32087931:T:C	rs375354027	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr11	32526731	32526732	chr11:32526732:T:C	rs7950535	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr11	33011880	33011881	chr11:33011881:T:C	rs12275192	T	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr11	33203315	33203316	chr11:33203316:T:C	rs1842499	T	C	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr11	33722707	33722708	chr11:33722708:T:C	rs41275166	T	C	T	Sox3.mouse_HMG_2	2	1	+	1.3048297814662555	-5.062067525059489	CATCAGGGTCAGTGAGT
chr11	33722728	33722729	chr11:33722729:A:G	rs73482997	A	G	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr11	33831559	33831560	chr11:33831560:C:T	rs11032412	C	T	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr11	33988181	33988182	chr11:33988182:C:G	rs10734421	C	G	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr11	34047286	34047287	chr11:34047287:G:A	rs73486549	G	A	G	Sox3.mouse_HMG_2	13	1	+	3.1895654432989917	-2.8620730608873197	AGACATTGCTAGTGATT
chr11	34150833	34150834	chr11:34150834:G:C	rs3763971	G	C	g	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr11	34371562	34371563	chr11:34371563:T:C	rs76369321	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr11	34445942	34445943	chr11:34445943:T:C	rs482322	T	C	C	Sox3.mouse_HMG_2	4	1	-	5.43366877723238	-0.9556126571455097	GATCAATATTATTAATC
chr11	34604488	34604489	chr11:34604489:A:G	rs137957325	A	G	A	Sox3.mouse_HMG_2	2	1	-	4.878100979090499	-1.4887963274352465	CATTAAAGGTAGTGATA
chr11	34604504	34604505	chr11:34604505:C:T	rs10836264	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr11	34692904	34692905	chr11:34692905:A:G	rs437952	A	G	G	Sox3.mouse_HMG_2	6	1	-	4.57937687954162	-1.8099045548362696	TATCTATGGTATAGATA
chr11	34836286	34836287	chr11:34836287:A:G	rs731727	A	G	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr11	34855775	34855776	chr11:34855776:C:T	rs138768880	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr11	34879575	34879576	chr11:34879576:A:G	rs7118017	A	G	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr11	34890741	34890742	chr11:34890742:T:A	rs2915224	T	A	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr11	34930397	34930398	chr11:34930398:A:G	rs7924507	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr11	34930445	34930446	chr11:34930446:G:T	rs1991648	G	T	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr11	34941911	34941912	chr11:34941912:T:C	rs11032942	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr11	34941926	34941927	chr11:34941927:T:C	rs978010197	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr11	34977936	34977937	chr11:34977937:G:T	rs733567	G	T	T	Sox3.mouse_HMG_2	13	1	+	4.622063464177011	-1.7651965747502005	GGTTAATATTATTGATC
chr11	34985160	34985161	chr11:34985161:G:A	rs2253128	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr11	35047047	35047048	chr11:35047048:A:G	rs563528273	A	G	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr11	35047058	35047059	chr11:35047059:C:G	rs2785155	C	G	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr11	35088127	35088128	chr11:35088128:G:A	rs1365057	G	A	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr11	35154611	35154612	chr11:35154612:T:C	rs187115	T	C	C	Sox3.mouse_HMG_2	14	1	-	1.6249208285067736	-1.6931454412648277	TATCATCGTCATTGAGA
chr11	35223095	35223096	chr11:35223096:C:A	rs11033031	C	A	C	Sox3.mouse_HMG_2	8	1	-	9.257145585244846	10.070783518249058	CCTCAATGGTATAGATA
chr11	35268209	35268210	chr11:35268210:C:T	rs10444271	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr11	35337962	35337963	chr11:35337963:A:G	rs7927023	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr11	35352303	35352304	chr11:35352304:T:C	rs7127824	T	C	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr11	35352326	35352327	chr11:35352327:G:T	rs7111949	G	T	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr11	35530462	35530463	chr11:35530463:A:G	rs598515	A	G	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr11	35546373	35546374	chr11:35546374:C:T	rs16927686	C	T	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr11	35736120	35736121	chr11:35736121:G:A	rs11033261	G	A	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr11	35905244	35905245	chr11:35905245:A:G	rs1512787	A	G	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr11	36196952	36196953	chr11:36196953:A:T	rs3812770	A	T	T	Sox3.mouse_HMG_2	4	1	+	3.069586445647402	-3.8384887821456544	CTTCACTTTCATTGGTC
chr11	36196984	36196985	chr11:36196985:T:G	rs3812769	T	G	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr11	36388275	36388276	chr11:36388276:T:C	rs606442	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr11	36425879	36425880	chr11:36425880:C:A	rs754005	C	A	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr11	36455411	36455412	chr11:36455412:A:G	rs16928896	A	G	A	Sox3.mouse_HMG_2	5	1	+	8.035616136377763	1.6463347019998753	GATGAATGCCAGTGAAT
chr11	36520568	36520569	chr11:36520569:G:A	rs10742375	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr11	36774741	36774742	chr11:36774742:T:C	rs12290480	T	C	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr11	36870601	36870602	chr11:36870602:A:G	rs10836628	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr11	37004524	37004525	chr11:37004525:C:T	rs12419288	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr11	37108733	37108734	chr11:37108734:T:G	rs4145291	T	G	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr11	37394986	37394987	chr11:37394987:C:T	rs79359778	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr11	37605156	37605157	chr11:37605157:G:A	rs7932799	G	A	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr11	37605302	37605303	chr11:37605303:A:G	rs59240265	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.2899198195785657	-4.39445437988177	CATCAGTGATATTGGCC
chr11	37916484	37916485	chr11:37916485:C:G	rs76547434	C	G	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr11	38005892	38005893	chr11:38005893:G:A	rs7108868	G	A	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr11	38124106	38124107	chr11:38124107:T:A	rs10836933	T	A	T	Sox3.mouse_HMG_2	6	1	+	4.159508359392682	-2.7485668684003737	TGAGAATTTTATTGAAT
chr11	38461620	38461621	chr11:38461621:A:G	rs11603512	A	G	A	Sox3.mouse_HMG_2	6	1	-	7.344091485930335	0.9548100515524442	CATCTATGTTAGTGACT
chr11	38674200	38674201	chr11:38674201:G:C	rs139685140	G	C	G	Sox3.mouse_HMG_2	0	1	+	3.075667700239447	2.771034182715259	GGTTAAATTTAGTGATG
chr11	38937724	38937725	chr11:38937725:A:G	rs6485041	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr11	39012004	39012005	chr11:39012005:A:G	rs1461630	A	G	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr11	39306974	39306975	chr11:39306975:C:T	rs2088544	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr11	39619873	39619874	chr11:39619874:G:A	rs7124730	G	A	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr11	40265722	40265723	chr11:40265723:C:T	rs72891085	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr11	40770938	40770939	chr11:40770939:A:T	rs11036069	A	T	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr11	41044555	41044556	chr11:41044556:A:G	rs355219	A	G	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr11	41497498	41497499	chr11:41497499:A:G	rs11036424	A	G	A	Sox3.mouse_HMG_2	16	1	+	2.7535653200242884	2.965139746509539	TACCAATTTCAGTGCTA
chr11	41522824	41522825	chr11:41522825:T:G	rs1457331	T	G	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr11	41996799	41996800	chr11:41996800:C:A	rs138058965	C	A	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr11	41996812	41996813	chr11:41996813:G:A	rs1514816	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr11	42176584	42176585	chr11:42176585:C:T	rs992464	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr11	42415360	42415361	chr11:42415361:T:C	rs11602641	T	C	T	Sox3.mouse_HMG_2	6	1	+	8.671331716634958	2.2820502822570647	TCTCAATTTTATAGATG
chr11	42498922	42498923	chr11:42498923:T:A	rs1462663	T	A	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr11	42762289	42762290	chr11:42762290:C:T	rs7930627	C	T	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr11	42773546	42773547	chr11:42773547:A:C	rs7928165	A	C	C	Sox3.mouse_HMG_2	9	1	-	1.9550542817121688	-4.028926978172148	GGTCATGTGTATTGATT
chr11	42787191	42787192	chr11:42787192:A:G	rs35174977	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr11	43573480	43573481	chr11:43573481:A:C	rs4755200	A	C	A	Sox3.mouse_HMG_2	15	1	+	2.6267013776148977	1.1502916535677867	GAGCAAAGACATTGAAT
chr11	43908753	43908754	chr11:43908754:C:T	rs11603980	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr11	44017087	44017088	chr11:44017088:T:C	rs112377707	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.1962634363345406	-4.193017998043346	TCTGAATGTCCTTGATG
chr11	44411366	44411367	chr11:44411367:A:G	rs12786821	A	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr11	44564983	44564984	chr11:44564984:G:A	rs978812942	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr11	44654702	44654703	chr11:44654703:A:T	rs7925013	A	T	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr11	44781051	44781052	chr11:44781052:C:A	rs1377330	C	A	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr11	44817559	44817560	chr11:44817560:A:G	rs16938088	A	G	A	Sox3.mouse_HMG_2	10	1	-	3.4768519768580575	3.4768519768580575	GGTCAATTGCTGTGAGA
chr11	44822545	44822546	chr11:44822546:C:T	rs2863121	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr11	45097629	45097630	chr11:45097630:A:C	rs747614	A	C	C	Sox3.mouse_HMG_2	9	1	-	2.7654565974261756	-3.218524662458142	AAAAAATGGTAGTGAAA
chr11	45140954	45140955	chr11:45140955:A:C	rs73464580	A	C	t	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr11	45284874	45284875	chr11:45284875:C:T	rs74958363	C	T	C	Sox3.mouse_HMG_2	11	1	+	3.921564036628056	10.605938236088392	TGTCAATGTCACTGTTC
chr11	45948532	45948533	chr11:45948533:T:C	rs2959103	T	C	C	Sox3.mouse_HMG_2	6	1	+	1.244756365150463	-5.144525069227428	TGGCAATGGCAGTGCTC
chr11	46159539	46159540	chr11:46159540:C:G	rs9300054	C	G	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr11	46710904	46710905	chr11:46710905:C:T	rs1406656126	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr11	47281723	47281724	chr11:47281724:T:C	rs326217	T	C	T	Sox3.mouse_HMG_2	12	1	+	4.682394609592726	-1.3685725283380894	CATCTATGGCAATGATG
chr11	47507164	47507165	chr11:47507165:G:A	rs117127556	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr11	47592443	47592444	chr11:47592444:G:T	rs1180543788	G	T	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr11	47759504	47759505	chr11:47759505:C:T	rs10742820	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr11	47773249	47773250	chr11:47773250:C:T	rs10838763	C	T	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr11	47795737	47795738	chr11:47795738:A:G	rs2904127	A	G	A	Sox3.mouse_HMG_2	1	1	+	3.464983726307185	1.4585957842877293	TATCAATGTCATCAAAG
chr11	47918661	47918662	chr11:47918662:C:T	rs73460984	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr11	47982371	47982372	chr11:47982372:A:G	rs72899720	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.0078205696560465	-2.676553629804289	AAACAATTCCATTGGGC
chr11	48127902	48127903	chr11:48127903:A:G	rs907737329	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr11	49223707	49223708	chr11:49223708:G:A	rs191332680	G	A	g	Sox3.mouse_HMG_2	10	1	-	1.1498690074046027	1.1498690074046027	GGTCATTTCTCTTGATG
chr11	55474982	55474983	chr11:55474983:C:T	rs61917995	C	T	c	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr11	56714406	56714407	chr11:56714407:T:C	rs57838808	T	C	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr11	57547687	57547688	chr11:57547688:C:T	rs1172189948	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr11	57590240	57590241	chr11:57590241:T:G	rs1846568	T	G	T	Sox3.mouse_HMG_2	12	1	+	2.7520135126332415	-3.634575160038474	CAACAAGTATATTGAGA
chr11	57592328	57592329	chr11:57592329:T:A	rs2244169	T	A	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr11	57776188	57776189	chr11:57776189:A:G	rs67812265	A	G	A	Sox3.mouse_HMG_2	0	1	+	5.285946794689284	6.9824390883919465	AGTCAATTGTATTAAGT
chr11	57776220	57776221	chr11:57776221:G:C	rs932617289	G	C	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr11	57979929	57979930	chr11:57979930:C:T	rs10792121	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr11	58104008	58104009	chr11:58104009:C:G	rs61904054	C	G	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr11	58641396	58641397	chr11:58641397:A:G	rs11229556	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr11	58676327	58676328	chr11:58676328:A:G	rs491005	A	G	A	Sox3.mouse_HMG_2	13	1	+	3.2304167549901313	9.282055259176444	GGTCAATGATATTACTG
chr11	59025604	59025605	chr11:59025605:A:G	rs11229741	A	G	.	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr11	59142465	59142466	chr11:59142466:T:C	rs79456114	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr11	59556507	59556508	chr11:59556508:G:A	rs7952380	G	A	.	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr11	59556546	59556547	chr11:59556547:A:C	rs2298869	A	C	.	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr11	59605842	59605843	chr11:59605843:T:C	rs114970362	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr11	60285825	60285826	chr11:60285826:T:G	rs1025939574	T	G	t	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr11	60364690	60364691	chr11:60364691:G:A	rs7952244	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr11	60389010	60389011	chr11:60389011:G:A	rs12793970	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr11	60606510	60606511	chr11:60606511:A:C	rs10466688	A	C	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr11	60803515	60803516	chr11:60803516:G:C	rs114905057	G	C	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr11	60843064	60843065	chr11:60843065:G:A	rs12278325	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr11	61071568	61071569	chr11:61071569:C:T	rs112975826	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr11	61678879	61678880	chr11:61678880:A:G	rs4963304	A	G	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr11	62013042	62013043	chr11:62013043:A:T	rs141939979	A	T	A	Sox3.mouse_HMG_2	6	1	-	1.9436727633403608	-4.9644024644526965	CATCAGTGTTAGGGAGA
chr11	62044329	62044330	chr11:62044330:T:G	rs259873	T	G	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr11	62049658	62049659	chr11:62049659:T:C	rs259884	T	C	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr11	62058266	62058267	chr11:62058267:G:A	rs7926212	G	A	G	Sox3.mouse_HMG_2	12	1	-	2.313044107427274	8.36401124535809	GAGCAATGGCAGCGAGA
chr11	62058293	62058294	chr11:62058294:C:T	rs12577010	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr11	62126557	62126558	chr11:62126558:A:G	rs12362624	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr11	62126560	62126561	chr11:62126561:T:C	rs7927359	T	C	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr11	62146138	62146139	chr11:62146139:T:G	rs3781969	T	G	T	Sox3.mouse_HMG_2	4	1	-	2.3617346140637103	-4.546340613729347	CAGCAATTGTATAGAAC
chr11	62203654	62203655	chr11:62203655:G:A	rs72915236	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr11	63666542	63666543	chr11:63666543:C:T	rs4963426	C	T	C	Sox3.mouse_HMG_2	16	1	-	3.572014210955381	3.3604397844701306	GACCCATTTTAGTGATG
chr11	64317583	64317584	chr11:64317584:C:A	rs10128595	C	A	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr11	64317590	64317591	chr11:64317591:G:C	rs4930698	G	C	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr11	64317601	64317602	chr11:64317602:T:A	rs550819	T	A	A	Sox3.mouse_HMG_2	0	1	+	2.9467523942811176	2.040028632356752	TCTCGATGCTATTGGAT
chr11	64477603	64477604	chr11:64477604:C:T	rs652922	C	T	C	Sox3.mouse_HMG_2	0	1	+	4.108529423791963	3.6233944095378554	CCTCGATGGCAGTGAGA
chr11	64477607	64477608	chr11:64477608:G:A	rs652934	G	A	G	Sox3.mouse_HMG_2	4	1	+	4.108529423791963	10.497810858169855	CCTCGATGGCAGTGAGA
chr11	64596818	64596819	chr11:64596819:C:T	rs475688	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr11	64917312	64917313	chr11:64917313:A:G	chr11:64917313:A:G	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr11	64930477	64930478	chr11:64930478:C:T	rs111934356	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr11	65137436	65137437	chr11:65137437:C:T	rs10895987	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr11	65861427	65861428	chr11:65861428:C:T	rs34381357	C	T	C	Sox3.mouse_HMG_2	3	1	+	3.3807440010012337	-1.4761118742209882	CTTCCATGCCAGTGAGG
chr11	65911199	65911200	chr11:65911200:G:T	rs76214078	G	T	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr11	66201619	66201620	chr11:66201620:T:C	rs72936656	T	C	T	Sox3.mouse_HMG_2	5	1	-	8.02632593969119	1.6370445053133016	TTTCAATTTCATTTATT
chr11	66214374	66214375	chr11:66214375:C:T	rs3016319	C	T	C	Sox3.mouse_HMG_2	9	1	+	2.106279324439568	2.7989318673115275	CCTCATTGCCAGTGACA
chr11	67268712	67268713	chr11:67268713:C:A	rs61758508	C	A	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr11	67634683	67634684	chr11:67634684:G:A	rs115175343	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr11	67635813	67635814	chr11:67635814:A:G	rs12800028	A	G	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr11	67715005	67715006	chr11:67715006:A:G	rs6591280	A	G	-	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr11	67747419	67747420	chr11:67747420:C:G	rs10750804	C	G	-	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr11	68027534	68027535	chr11:68027535:C:T	rs308342	C	T	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr11	68037339	68037340	chr11:68037340:G:A	rs4147779	G	A	G	Sox3.mouse_HMG_2	16	1	+	2.6956368203074446	2.484062393822194	CTTCATTTGCAGTGAGG
chr11	68340863	68340864	chr11:68340864:T:C	rs312778	T	C	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr11	68343204	68343205	chr11:68343205:C:T	rs75696335	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr11	68410239	68410240	chr11:68410240:G:A	rs576118	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr11	68410259	68410260	chr11:68410260:C:T	rs667126	C	T	C	Sox3.mouse_HMG_2	16	1	-	1.1544637018074349	0.942889275322184	CATCAAGGCTAATGACG
chr11	68760065	68760066	chr11:68760066:C:T	rs117844102	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr11	69066567	69066568	chr11:69066568:C:A	rs61887953	C	A	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr11	69229229	69229230	chr11:69229230:C:T	rs61881114	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr11	69238781	69238782	chr11:69238782:T:C	rs76152355	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr11	69283338	69283339	chr11:69283339:T:C	rs773287404	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr11	69324942	69324943	chr11:69324943:T:G	rs1164092421	T	G	t	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr11	69335355	69335356	chr11:69335356:G:A	rs75100465	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr11	69383218	69383219	chr11:69383219:T:A	rs12146485	T	A	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr11	69403509	69403510	chr11:69403510:G:A	rs4980777	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr11	69449095	69449096	chr11:69449096:C:T	rs12806952	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr11	69492694	69492695	chr11:69492695:A:G	rs612611	A	G	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr11	69558559	69558560	chr11:69558560:C:T	rs78078215	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.8250078580053293	-3.226630646180982	GCTCGATGACAGTGGTG
chr11	69712261	69712262	chr11:69712262:T:C	rs1448627580	T	C	t	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr11	69904150	69904151	chr11:69904151:G:C	rs113222131	G	C	C	Sox3.mouse_HMG_2	13	1	+	1.3951102490972387	-4.992149789829973	CGTCACTGGTGGTGATT
chr11	69993210	69993211	chr11:69993211:C:G	rs4980708	C	G	C	Sox3.mouse_HMG_2	11	1	-	5.805736432429164	0.501884410382653	TATCAAGGGTAGTGTTT
chr11	70000733	70000734	chr11:70000734:G:A	rs2015411	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr11	70026326	70026327	chr11:70026327:G:A	rs200282711	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr11	70031789	70031790	chr11:70031790:G:A	rs187832886	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr11	70031821	70031822	chr11:70031822:C:T	rs11237292	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr11	70074178	70074179	chr11:70074179:C:T	rs367928486	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr11	70467640	70467641	chr11:70467641:T:C	rs188775855	T	C	T	Sox3.mouse_HMG_2	11	1	+	2.6658849873995263	-4.018489212060808	AATGATTGATATTGATG
chr11	71146863	71146864	chr11:71146864:C:T	rs4945170	C	T	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr11	71410607	71410608	chr11:71410608:T:C	rs12285140	T	C	c	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr11	71410827	71410828	chr11:71410828:A:C	rs111989006	A	C	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr11	71455290	71455291	chr11:71455291:A:G	rs1790373	A	G	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr11	71804640	71804641	chr11:71804641:C:T	rs61301176	C	T	-	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr11	73198826	73198827	chr11:73198827:C:A	rs12289180	C	A	C	Sox3.mouse_HMG_2	10	1	-	2.5158271316023346	2.5158271316023346	TATCAATGGTGATGAGT
chr11	73198841	73198842	chr11:73198842:G:T	rs12275582	G	T	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	73351300	73351301	chr11:73351301:T:C	rs140501983	T	C	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr11	73780173	73780174	chr11:73780174:A:G	rs189465960	A	G	A	Sox3.mouse_HMG_2	4	1	+	2.6522446989281887	-3.7370367354496987	GATGAATGACTGTGATT
chr11	73780178	73780179	chr11:73780179:C:A	rs1435364661	C	A	C	Sox3.mouse_HMG_2	9	1	+	2.6522446989281887	-2.639084018084171	GATGAATGACTGTGATT
chr11	74264760	74264761	chr11:74264761:G:A	rs79599822	G	A	G	Sox3.mouse_HMG_2	9	1	-	5.576360613068761	6.26901315594072	ATTCAGTGTCATTGAAG
chr11	74535963	74535964	chr11:74535964:G:C	rs598395	G	C	C	Sox3.mouse_HMG_2	14	1	-	5.124563691848572	7.839026039665615	CATCAATGTTAATGCAT
chr11	74546510	74546511	chr11:74546511:T:C	rs660418	T	C	T	Sox3.mouse_HMG_2	12	1	+	1.6656688555987424	-4.385298282332075	TATCAACTCCAGTGGGG
chr11	74636674	74636675	chr11:74636675:T:C	rs76479789	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr11	74933150	74933151	chr11:74933151:A:G	rs752918124	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr11	74943323	74943324	chr11:74943324:C:T	rs77671502	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr11	75369304	75369305	chr11:75369305:T:G	rs11236409	T	G	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr11	75381766	75381767	chr11:75381767:G:A	rs34113413	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr11	75447822	75447823	chr11:75447823:T:G	rs547844	T	G	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr11	75651482	75651483	chr11:75651483:G:T	rs3862804	G	T	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr11	75872945	75872946	chr11:75872946:G:A	rs4945027	G	A	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr11	75967126	75967127	chr11:75967127:G:T	rs114942168	G	T	G	Sox3.mouse_HMG_2	3	1	-	3.4811643451590792	-3.4195058940998275	GATCAATGGCAGGCATA
chr11	76114473	76114474	chr11:76114474:T:C	rs6592626	T	C	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr11	76123384	76123385	chr11:76123385:G:A	rs117752922	G	A	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr11	76288191	76288192	chr11:76288192:T:A	rs12290788	T	A	T	Sox3.mouse_HMG_2	8	1	+	3.1317388659129906	1.099310548164281	CAGCAATGTCAGGGAAG
chr11	76288205	76288206	chr11:76288206:C:T	rs905992028	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr11	76560216	76560217	chr11:76560217:T:C	rs2513517	T	C	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr11	76564658	76564659	chr11:76564659:T:C	rs12789493	T	C	C	Sox3.mouse_HMG_2	9	1	+	6.306768661782423	5.614116118910463	AAACAATTATAGTGGTA
chr11	76636089	76636090	chr11:76636090:G:A	rs117930687	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr11	76636122	76636123	chr11:76636123:G:T	rs11600548	G	T	G	Sox3.mouse_HMG_2	15	1	+	4.597546216368514	7.334673361088539	CATTAATGCCAGTGGGA
chr11	76642706	76642707	chr11:76642707:T:A	rs2155223	T	A	-	Sox3.mouse_HMG_2	12	1	+	4.841068797042125	-1.2098983408886905	TATCAATTTTTTTAATT
chr11	76650174	76650175	chr11:76650175:G:A	rs145753653	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr11	76650190	76650191	chr11:76650191:T:C	rs114382639	T	C	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr11	76666774	76666775	chr11:76666775:G:A	rs6592657	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr11	76863666	76863667	chr11:76863667:A:G	rs7942646	A	G	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr11	76877613	76877614	chr11:76877614:T:C	rs9666315	T	C	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr11	76903420	76903421	chr11:76903421:T:C	rs1025815	T	C	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr11	77111601	77111602	chr11:77111602:T:G	rs7951856	T	G	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr11	77174032	77174033	chr11:77174033:C:G	rs10899355	C	G	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr11	77360921	77360922	chr11:77360922:G:A	rs2602473	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr11	77458625	77458626	chr11:77458626:A:G	rs10899379	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr11	77463582	77463583	chr11:77463583:A:G	rs3015991	A	G	G	Sox3.mouse_HMG_2	15	1	-	3.6803836654451554	-0.09941575206064064	GCTCTATTTCATTGTTA
chr11	77564037	77564038	chr11:77564038:T:C	rs116910806	T	C	t	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr11	77724785	77724786	chr11:77724786:G:A	rs567814	G	A	G	Sox3.mouse_HMG_2	9	1	-	5.326876753694142	6.019529296566102	GATCAATGGCGGTGTTA
chr11	78044977	78044978	chr11:78044978:A:G	rs9943530	A	G	G	Sox3.mouse_HMG_2	6	1	-	3.278377868947187	-3.1109035654307036	GAACAATTTCAGTAAAC
chr11	78118248	78118249	chr11:78118249:T:C	rs7115416	T	C	C	Sox3.mouse_HMG_2	10	1	-	4.749374679530579	-2.15938009978464	TAACTATGATAGTGATA
chr11	78325478	78325479	chr11:78325479:G:A	rs114650129	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr11	78534287	78534288	chr11:78534288:G:T	rs4945289	G	T	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr11	78560567	78560568	chr11:78560568:A:C	rs6592792	A	C	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	78715932	78715933	chr11:78715933:A:C	rs144035681	A	C	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr11	79018789	79018790	chr11:79018790:C:T	rs12785810	C	T	C	Sox3.mouse_HMG_2	7	1	-	3.4617381036776247	-3.1670833914104306	AAAAAATGTCAGTGAAT
chr11	79437968	79437969	chr11:79437969:G:A	rs7116789	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr11	79462037	79462038	chr11:79462038:C:T	rs1912702	C	T	T	Sox3.mouse_HMG_2	16	1	+	3.1930014573570435	4.795994507017494	ACTCAATTTCATTTAAC
chr11	79564572	79564573	chr11:79564573:G:A	rs12364768	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr11	80030870	80030871	chr11:80030871:C:T	rs1938874	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr11	80099186	80099187	chr11:80099187:C:A	rs140967147	C	A	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr11	80298042	80298043	chr11:80298043:C:T	rs11232051	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr11	80298052	80298053	chr11:80298053:T:G	rs7396396	T	G	T	Sox3.mouse_HMG_2	14	1	-	3.0102533165657372	-3.0222753010229075	ATTTAATGGCAATGATT
chr11	80565007	80565008	chr11:80565008:C:G	rs74639567	C	G	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr11	80673655	80673656	chr11:80673656:A:G	rs4122080	A	G	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr11	81247120	81247121	chr11:81247121:C:A	rs4551792	C	A	C	Sox3.mouse_HMG_2	9	1	+	11.312737144264432	6.021408427252071	TTTCAATTTCATTGAGG
chr11	81303835	81303836	chr11:81303836:A:G	rs7123367	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr11	81412193	81412194	chr11:81412194:T:C	rs17142194	T	C	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr11	81825719	81825720	chr11:81825720:A:G	rs12577082	A	G	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr11	81897634	81897635	chr11:81897635:G:A	rs1540196	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr11	81897846	81897847	chr11:81897847:A:C	rs12365613	A	C	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr11	82106885	82106886	chr11:82106886:A:T	rs560668	A	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr11	82451407	82451408	chr11:82451408:C:T	rs4944391	C	T	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr11	82797944	82797945	chr11:82797945:T:C	rs551450	T	C	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr11	83257665	83257666	chr11:83257666:T:C	rs656515	T	C	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr11	83326466	83326467	chr11:83326467:G:A	rs77756822	G	A	G	Sox3.mouse_HMG_2	2	1	+	4.10000407124612	5.972221962142474	CAGCCATGGCAGTGATG
chr11	83326469	83326470	chr11:83326470:A:G	rs78648964	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.10000407124612	-2.289277363131768	CAGCCATGGCAGTGATG
chr11	83337137	83337138	chr11:83337138:C:T	rs79236161	C	T	C	Sox3.mouse_HMG_2	9	1	+	3.442116370359825	4.134768913231783	CTTCAATGTCAATGGGA
chr11	83572528	83572529	chr11:83572529:C:T	rs661927	C	T	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr11	83614070	83614071	chr11:83614071:G:C	rs1228632	G	C	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr11	83852861	83852862	chr11:83852862:T:C	rs4943880	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr11	83866835	83866836	chr11:83866836:C:T	rs61900043	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	83999444	83999445	chr11:83999445:C:T	rs1601091	C	T	C	Sox3.mouse_HMG_2	11	1	-	10.966968338955013	6.395484210621728	GGACAATGGCAGTGATA
chr11	84195223	84195224	chr11:84195224:T:C	rs12802109	T	C	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr11	84406863	84406864	chr11:84406864:G:T	rs504196	G	T	T	Sox3.mouse_HMG_2	4	1	-	5.093497533505213	12.00157276129827	TGTCCATTTCATTGAGG
chr11	84650247	84650248	chr11:84650248:A:G	rs150912547	A	G	a	Sox3.mouse_HMG_2	9	1	-	7.071357412239798	6.378704869367839	GTTCAATTGTAGTGGGA
chr11	84664697	84664698	chr11:84664698:T:C	rs1940065	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.898773370572636	-0.7856008288876986	AAAAAATTGTATTGATT
chr11	84744315	84744316	chr11:84744316:T:G	rs6592199	T	G	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr11	85721349	85721350	chr11:85721350:G:A	rs11234389	G	A	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr11	85945858	85945859	chr11:85945859:T:C	rs34874199	T	C	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr11	86093389	86093390	chr11:86093390:G:A	rs12284629	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr11	86147454	86147455	chr11:86147455:G:T	rs3851178	G	T	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr11	86155528	86155529	chr11:86155529:A:G	rs10160337	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr11	86442566	86442567	chr11:86442567:A:G	rs12285249	A	G	G	Sox3.mouse_HMG_2	10	1	-	3.206109796151271	3.206109796151271	CATCAATGTCTGTGGAC
chr11	86444088	86444089	chr11:86444089:T:C	rs10501620	T	C	T	Sox3.mouse_HMG_2	9	1	+	3.179443504209607	2.4867909613376473	TAGCAATTATAGTGGGT
chr11	86589449	86589450	chr11:86589450:A:G	rs1945034	A	G	A	Sox3.mouse_HMG_2	15	1	-	3.753648560635561	-0.026150856870234718	TCTTAATGTCCTTGATT
chr11	86687396	86687397	chr11:86687397:G:A	rs72961771	G	A	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr11	86728425	86728426	chr11:86728426:A:G	rs11822315	A	G	a	Sox3.mouse_HMG_2	5	1	+	3.3000147174122825	-3.089266716965607	CCTCAATGTGAGTGCTT
chr11	86728438	86728439	chr11:86728439:A:T	rs2433410	A	T	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr11	87003753	87003754	chr11:87003754:C:T	rs7952151	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr11	87148084	87148085	chr11:87148085:A:G	rs144715854	A	G	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr11	87148099	87148100	chr11:87148100:T:C	rs533056	T	C	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr11	87444468	87444469	chr11:87444469:G:A	rs7118472	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr11	87456702	87456703	chr11:87456703:A:C	rs12281894	A	C	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	87975958	87975959	chr11:87975959:T:C	rs34250015	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr11	88013852	88013853	chr11:88013853:C:G	rs2514251	C	G	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr11	88086393	88086394	chr11:88086394:C:T	rs10831489	C	T	C	Sox3.mouse_HMG_2	3	1	+	6.13206783144774	1.2752119562255164	GGACAAGGGTATTGATA
chr11	88683247	88683248	chr11:88683248:A:G	rs7950074	A	G	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr11	88697366	88697367	chr11:88697367:C:T	rs1109101	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr11	89147233	89147234	chr11:89147234:G:A	rs4519092	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr11	89490363	89490364	chr11:89490364:A:G	rs1340192855	A	G	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr11	90171537	90171538	chr11:90171538:T:C	rs10765262	T	C	T	Sox3.mouse_HMG_2	10	1	-	1.1872346720763352	-5.7215201072388835	CATCAAGGCCAGGGATC
chr11	90171547	90171548	chr11:90171548:G:T	rs75898894	G	T	G	Sox3.mouse_HMG_2	0	1	-	1.1872346720763352	-0.20462410410214016	CATCAAGGCCAGGGATC
chr11	90455187	90455188	chr11:90455188:T:C	rs76870789	T	C	t	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr11	90732714	90732715	chr11:90732715:A:G	rs12288659	A	G	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr11	90931147	90931148	chr11:90931148:A:C	rs12419648	A	C	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr11	91514222	91514223	chr11:91514223:A:G	rs7935947	A	G	G	Sox3.mouse_HMG_2	4	1	+	5.273949472683466	-1.1153319616944248	AATCAATTTCTTTGTTT
chr11	91763081	91763082	chr11:91763082:A:C	rs17249700	A	C	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr11	91786479	91786480	chr11:91786480:C:T	rs2250842	C	T	T	Sox3.mouse_HMG_2	13	1	-	2.4021348878106505	-3.6495036163756605	AGAAAATGTCATTGAGT
chr11	91846508	91846509	chr11:91846509:A:G	rs16916597	A	G	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr11	91859887	91859888	chr11:91859888:G:C	rs4144909	G	C	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr11	92120530	92120531	chr11:92120531:C:A	rs11605206	C	A	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr11	92286173	92286174	chr11:92286174:A:G	rs2845877	A	G	G	Sox3.mouse_HMG_2	10	1	+	1.424137616468603	-5.484617162846617	ACACATTGCCAGTGATG
chr11	92583705	92583706	chr11:92583706:C:T	rs7951136	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr11	92632255	92632256	chr11:92632256:A:G	rs561816	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr11	92738975	92738976	chr11:92738976:C:T	rs78102219	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr11	92805238	92805239	chr11:92805239:C:A	rs62622785	C	A	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr11	92805287	92805288	chr11:92805288:C:T	rs112113306	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr11	92923339	92923340	chr11:92923340:A:T	rs74987082	A	T	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	93289561	93289562	chr11:93289562:T:C	rs7110891	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr11	93291418	93291419	chr11:93291419:A:C	rs10831020	A	C	C	Sox3.mouse_HMG_2	9	1	-	7.68327339736755	1.6992921374832306	AATCAAGTTTATTGAAT
chr11	93372798	93372799	chr11:93372799:T:C	rs3020071	T	C	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr11	93821266	93821267	chr11:93821267:C:T	rs114437106	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr11	93904275	93904276	chr11:93904276:G:A	rs8181578	G	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr11	93909896	93909897	chr11:93909897:T:C	rs570920422	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr11	93986907	93986908	chr11:93986908:T:G	rs1441331489	T	G	T	Sox3.mouse_HMG_2	12	1	+	5.835329869672443	-0.5512588029992734	ACACAATTTTAGTGGTG
chr11	94032153	94032154	chr11:94032154:T:C	rs1518563	T	C	T	Sox3.mouse_HMG_2	0	1	+	3.2560125308310046	3.7411475450851124	TGTCATTTCCAGTGAAT
chr11	94127908	94127909	chr11:94127909:T:C	rs72968788	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr11	94663137	94663138	chr11:94663138:C:G	rs7115977	C	G	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr11	94665442	94665443	chr11:94665443:G:C	rs674106	G	C	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr11	94740902	94740903	chr11:94740903:G:T	rs7946370	G	T	G	Sox3.mouse_HMG_2	13	1	+	2.4014002140609203	-3.9858598248662918	CCTGAATGGTAGCGATT
chr11	94814581	94814582	chr11:94814582:C:A	rs10501816	C	A	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr11	94873221	94873222	chr11:94873222:C:T	rs59559050	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr11	94889568	94889569	chr11:94889569:G:A	rs566217	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr11	94927144	94927145	chr11:94927145:C:T	rs690028	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr11	94927159	94927160	chr11:94927160:G:T	rs690026	G	T	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr11	94935063	94935064	chr11:94935064:C:T	rs78628821	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr11	94935064	94935065	chr11:94935065:G:A	rs775735744	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr11	95076333	95076334	chr11:95076334:A:G	rs76788624	A	G	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr11	95234972	95234973	chr11:95234973:T:C	rs1458451	T	C	C	Sox3.mouse_HMG_2	0	1	-	4.53415273210201	6.230645025804674	ATTCAATGTCAGAGAAG
chr11	95359696	95359697	chr11:95359697:C:A	rs3847557	C	A	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr11	95363285	95363286	chr11:95363286:G:T	rs500523	G	T	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr11	95460138	95460139	chr11:95460139:G:A	rs77159499	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr11	95549380	95549381	chr11:95549381:C:T	rs17705874	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr11	95573155	95573156	chr11:95573156:A:C	rs1939878	A	C	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr11	95600122	95600123	chr11:95600123:C:G	rs7109623	C	G	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr11	95600130	95600131	chr11:95600131:A:G	rs79249315	A	G	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr11	95673383	95673384	chr11:95673384:G:A	rs7945162	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr11	95790033	95790034	chr11:95790034:G:C	chr11:95790034:G:C	G	C	G	Sox3.mouse_HMG_2	3	1	-	2.6592547789639083	-3.3912645309253886	GCTCAATTGGATTGGGG
chr11	95790047	95790048	chr11:95790048:G:A	rs117840238	G	A	g	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr11	95795726	95795727	chr11:95795727:G:T	rs12271427	G	T	g	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr11	95890398	95890399	chr11:95890399:G:A	rs112682456	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr11	95917340	95917341	chr11:95917341:T:C	rs116192403	T	C	T	Sox3.mouse_HMG_2	10	1	-	3.580192531859858	-3.328562247455363	AGTTAATGCTATTGTAT
chr11	95922691	95922692	chr11:95922692:A:C	rs16922701	A	C	A	Sox3.mouse_HMG_2	2	1	+	3.232488105722574	0.14724757498036567	CAACAATTATAGTGTGC
chr11	96000074	96000075	chr11:96000075:A:C	rs62028	A	C	A	Sox3.mouse_HMG_2	4	1	+	3.7063450231029895	-3.201730204690067	GCTCAAAGTTATTTATT
chr11	96168912	96168913	chr11:96168913:C:T	rs188915014	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr11	96191934	96191935	chr11:96191935:G:A	rs139045019	G	A	G	Sox3.mouse_HMG_2	7	1	+	2.042977666574472	-4.5858438285135845	TGTCAGTGACAGTGTTG
chr11	96207397	96207398	chr11:96207398:T:C	rs61901907	T	C	T	Sox3.mouse_HMG_2	12	1	+	3.7954519390301398	-2.255515198900677	CTTTAATGATATTGCTT
chr11	96218222	96218223	chr11:96218223:G:A	rs113409010	G	A	-	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr11	96248078	96248079	chr11:96248079:G:A	rs9971615	G	A	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr11	96536034	96536035	chr11:96536035:G:C	rs1451329	G	C	.	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr11	96602408	96602409	chr11:96602409:A:G	rs117508397	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr11	96602414	96602415	chr11:96602415:A:G	rs10789966	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr11	96798796	96798797	chr11:96798797:T:C	rs1452967	T	C	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr11	97345355	97345356	chr11:97345356:T:A	rs7927318	T	A	T	Sox3.mouse_HMG_2	15	1	-	2.5582968291142194	4.861686522572905	GATCAATGGCATGCAAA
chr11	98070742	98070743	chr11:98070743:A:G	rs35632231	A	G	A	Sox3.mouse_HMG_2	5	1	+	7.083694738968709	0.6944133045908206	AGGCAATGATAGTGATG
chr11	98107971	98107972	chr11:98107972:G:A	rs73538350	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr11	98793490	98793491	chr11:98793491:C:T	rs146613707	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr11	98895619	98895620	chr11:98895620:C:T	rs10790333	C	T	C	Sox3.mouse_HMG_2	7	1	-	2.9619687517322633	-3.666852743355793	CATGAACGTCATTGGTT
chr11	99016041	99016042	chr11:99016042:G:A	rs764346810	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr11	99016049	99016050	chr11:99016050:T:G	chr11:99016050:T:G	T	G	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr11	99061401	99061402	chr11:99061402:T:C	rs7102254	T	C	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr11	99349409	99349410	chr11:99349410:A:G	rs10893173	A	G	g	Sox3.mouse_HMG_2	5	1	+	1.8363328575928715	-4.552948576785018	GCTCCATGGCATTTATG
chr11	99466718	99466719	chr11:99466719:T:G	rs2656195	T	G	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr11	100566690	100566691	chr11:100566691:A:G	rs1216577	A	G	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr11	100906629	100906630	chr11:100906630:T:G	rs12796850	T	G	T	Sox3.mouse_HMG_2	6	1	+	2.4780227263734194	-4.430052501419636	TGGCAATTCTCTTGATT
chr11	101021022	101021023	chr11:101021023:T:G	rs529808	T	G	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr11	101852264	101852265	chr11:101852265:A:T	rs56311893	A	T	A	Sox3.mouse_HMG_2	2	1	-	1.9064725605630153	-1.3751842152205198	GATGAATGTCACTGTTG
chr11	101913060	101913061	chr11:101913061:A:C	rs116614577	A	C	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr11	102079899	102079900	chr11:102079900:G:A	rs138065145	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr11	102108640	102108641	chr11:102108641:C:T	rs7931899	C	T	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr11	102306083	102306084	chr11:102306084:C:G	chr11:102306084:C:G	C	G	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr11	102342701	102342702	chr11:102342702:A:G	rs115631785	A	G	a	Sox3.mouse_HMG_2	10	1	+	3.7503902962304814	-3.1583644830847386	GAGCAATTACATGGATA
chr11	102456555	102456556	chr11:102456556:A:T	rs78664789	A	T	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr11	102490021	102490022	chr11:102490022:C:T	rs2186992	C	T	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr11	102553813	102553814	chr11:102553814:G:A	rs2186763	G	A	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr11	102574031	102574032	chr11:102574032:A:G	rs17098481	A	G	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr11	102613067	102613068	chr11:102613068:A:G	chr11:102613068:A:G	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr11	102613075	102613076	chr11:102613076:A:G	chr11:102613076:A:G	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr11	102613094	102613095	chr11:102613095:T:C	rs1711413	T	C	C	Sox3.mouse_HMG_2	5	1	-	7.438521640668431	1.0492402062905422	TTTCAATTCCAGTGAGC
chr11	103463749	103463750	chr11:103463750:G:T	rs60614960	G	T	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr11	103529429	103529430	chr11:103529430:T:C	rs11820878	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr11	103529478	103529479	chr11:103529479:G:A	rs115605699	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr11	103632192	103632193	chr11:103632193:C:T	rs2122781	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr11	103662344	103662345	chr11:103662345:A:G	rs881352	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr11	103704112	103704113	chr11:103704113:A:G	rs79917023	A	G	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr11	104051257	104051258	chr11:104051258:C:T	rs61892152	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr11	104111104	104111105	chr11:104111105:A:G	rs168636	A	G	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr11	104488707	104488708	chr11:104488708:G:A	rs78526685	G	A	G	Sox3.mouse_HMG_2	2	1	+	3.260157394938366	5.132375285834721	TAGCAATGGTATTTAGA
chr11	104504982	104504983	chr11:104504983:A:G	rs994491	A	G	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr11	104763878	104763879	chr11:104763879:A:G	rs2845897	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr11	104846074	104846075	chr11:104846075:T:A	rs12274726	T	A	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr11	105047040	105047041	chr11:105047041:C:T	rs151249914	C	T	.	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr11	105055339	105055340	chr11:105055340:G:A	rs484345	G	A	.	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr11	105086105	105086106	chr11:105086106:A:G	rs1785866	A	G	.	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr11	105156289	105156290	chr11:105156290:T:C	rs78489440	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr11	105542536	105542537	chr11:105542537:G:C	rs2513258	G	C	g	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr11	105556889	105556890	chr11:105556890:A:T	rs1942973	A	T	T	Sox3.mouse_HMG_2	2	1	+	5.283118674323983	8.56477545010752	CTACAATGCTATTGTAA
chr11	105726047	105726048	chr11:105726048:G:A	rs1954762	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr11	106012886	106012887	chr11:106012887:T:C	rs2847181	T	C	T	Sox3.mouse_HMG_2	1	1	-	3.9990016031822657	1.9926136611628096	AATCCATTGCAGTGAGG
chr11	106047864	106047865	chr11:106047865:T:A	rs10791779	T	A	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr11	106078373	106078374	chr11:106078374:C:A	chr11:106078374:C:A	C	A	c	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr11	106368515	106368516	chr11:106368516:T:A	rs636907	T	A	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr11	106548250	106548251	chr11:106548251:G:A	rs12795694	G	A	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr11	106577900	106577901	chr11:106577901:A:T	rs4582939	A	T	T	Sox3.mouse_HMG_2	2	1	-	1.3980593547384945	-1.8835974210450426	CCTCCATGGTAGTGGAA
chr11	106805538	106805539	chr11:106805539:C:G	rs114642868	C	G	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr11	106942091	106942092	chr11:106942092:C:T	rs7930761	C	T	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr11	106948830	106948831	chr11:106948831:A:G	rs721625	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr11	107186857	107186858	chr11:107186858:C:T	rs4323833	C	T	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr11	107409077	107409078	chr11:107409078:T:C	rs4564297	T	C	T	Sox3.mouse_HMG_2	15	1	+	2.9285478519823527	-0.8512515655234432	GATCAACTGCAGGGATT
chr11	107592215	107592216	chr11:107592216:G:A	rs73555593	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr11	107803631	107803632	chr11:107803632:G:A	rs10502100	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr11	108020074	108020075	chr11:108020075:C:T	rs3858391	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr11	108093423	108093424	chr11:108093424:C:A	chr11:108093424:C:A	C	A	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr11	108569768	108569769	chr11:108569769:A:T	rs17693854	A	T	A	Sox3.mouse_HMG_2	1	1	+	5.054553709245529	2.359330150192235	CAGAAATGTTATTGAAT
chr11	109033823	109033824	chr11:109033824:G:A	rs1018227	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr11	109184558	109184559	chr11:109184559:T:C	rs993882125	T	C	T	Sox3.mouse_HMG_2	4	1	-	2.6393837718786055	-3.7498976624992824	TGACAATGAAAGTGATC
chr11	109794366	109794367	chr11:109794367:T:C	rs2716023	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr11	109864474	109864475	chr11:109864475:C:A	rs147188128	C	A	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr11	109915464	109915465	chr11:109915465:T:G	rs6589095	T	G	G	Sox3.mouse_HMG_2	5	1	-	6.851243724958064	-0.056831502834992456	CATCAATGGAAGTGTTG
chr11	109994094	109994095	chr11:109994095:A:T	rs73547119	A	T	A	Sox3.mouse_HMG_2	2	1	-	3.1995102081269753	-0.08214656765656066	TGTCAACTCCAGTGAAA
chr11	110091705	110091706	chr11:110091706:A:G	rs4561177	A	G	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr11	110132659	110132660	chr11:110132660:T:C	rs610984	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr11	110198242	110198243	chr11:110198243:G:C	chr11:110198243:G:C	G	C	G	Sox3.mouse_HMG_2	0	1	-	2.4710950249830956	2.7757285425072835	CAACAATGTTGTTTATG
chr11	110433878	110433879	chr11:110433879:T:C	rs7121928	T	C	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	110514262	110514263	chr11:110514263:T:G	chr11:110514263:T:G	T	G	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr11	110524299	110524300	chr11:110524300:C:T	rs116544476	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr11	110716223	110716224	chr11:110716224:T:C	rs17111661	T	C	t	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr11	110801245	110801246	chr11:110801246:C:T	rs117653658	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr11	110948341	110948342	chr11:110948342:A:G	rs59347061	A	G	A	Sox3.mouse_HMG_2	2	1	-	6.376444206466146	0.009546899940401088	AGTAAATGTTATTGAGT
chr11	110952738	110952739	chr11:110952739:A:G	rs1872764	A	G	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr11	111051021	111051022	chr11:111051022:G:T	rs111849446	G	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr11	111128784	111128785	chr11:111128785:A:G	rs10502131	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr11	111202054	111202055	chr11:111202055:G:A	rs949279	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr11	111210020	111210021	chr11:111210021:G:A	rs11213781	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr11	111312431	111312432	chr11:111312432:A:G	rs4617622	A	G	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr11	111402960	111402961	chr11:111402961:T:A	rs10891259	T	A	A	Sox3.mouse_HMG_2	1	1	-	7.376188859338555	4.6809653002852585	GATCAGTTCCATTGAAA
chr11	111601858	111601859	chr11:111601859:A:G	rs190994604	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr11	111601864	111601865	chr11:111601865:G:C	rs144854299	G	C	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr11	111788354	111788355	chr11:111788355:T:G	chr11:111788355:T:G	T	G	T	Sox3.mouse_HMG_2	11	1	+	3.028936695285258	1.6484145178714333	TATCAAGGGCTTTGATA
chr11	111788365	111788366	chr11:111788366:A:C	chr11:111788366:A:C	A	C	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr11	112200570	112200571	chr11:112200571:G:A	rs12420140	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr11	112267437	112267438	chr11:112267438:C:T	rs2518368	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr11	112401271	112401272	chr11:112401272:G:A	rs1525407	G	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr11	112617320	112617321	chr11:112617321:A:G	rs2513320	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr11	112656856	112656857	chr11:112656857:G:A	rs10891407	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr11	112778980	112778981	chr11:112778981:T:C	rs17114357	T	C	t	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr11	113503290	113503291	chr11:113503291:G:A	rs10891564	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr11	113549226	113549227	chr11:113549227:A:T	rs117667905	A	T	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr11	113549251	113549252	chr11:113549252:A:G	rs10891571	A	G	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr11	113553971	113553972	chr11:113553972:A:G	rs141528070	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.2452517246283685	-3.1440297097495216	TTTCAATGTGAGTGTTC
chr11	113618532	113618533	chr11:113618533:G:A	rs149837019	G	A	g	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr11	113668357	113668358	chr11:113668358:A:G	rs3934007	A	G	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr11	113730867	113730868	chr11:113730868:T:G	rs148333399	T	G	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr11	114154809	114154810	chr11:114154810:A:C	rs188314578	A	C	A	Sox3.mouse_HMG_2	1	1	+	5.4425682359574585	2.7271266996135184	AAACAATGTGATTGAGA
chr11	114400063	114400064	chr11:114400064:A:G	rs1340654862	A	G	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr11	114705903	114705904	chr11:114705904:A:T	rs1356428	A	T	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr11	114736170	114736171	chr11:114736171:G:A	rs117366190	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr11	114819728	114819729	chr11:114819729:G:T	rs4938141	G	T	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr11	114931715	114931716	chr11:114931716:C:G	rs4936309	C	G	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr11	115042144	115042145	chr11:115042145:C:T	rs146655590	C	T	C	Sox3.mouse_HMG_2	0	1	-	0.8105421015176143	-0.885950192185048	GCTCAAGGGCAGTGCTG
chr11	115073362	115073363	chr11:115073363:C:T	rs2513678	C	T	T	Sox3.mouse_HMG_2	10	1	-	5.6481214781710705	12.556876257486293	GATTAATGTTGTTGAAT
chr11	115194171	115194172	chr11:115194172:C:G	rs1170043416	C	G	C	Sox3.mouse_HMG_2	8	1	-	4.873460194224102	4.432676161072645	TAACAATGGCATTCAAA
chr11	115201636	115201637	chr11:115201637:A:G	rs77707760	A	G	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr11	115219206	115219207	chr11:115219207:T:C	rs6589487	T	C	T	Sox3.mouse_HMG_2	11	1	-	3.3744760161503153	7.9459601444836006	GATGAATGTTAATGAGC
chr11	115622851	115622852	chr11:115622852:A:G	rs146936541	A	G	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr11	115692714	115692715	chr11:115692715:T:C	rs1784965	T	C	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr11	115918574	115918575	chr11:115918575:A:C	rs4936335	A	C	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr11	115984361	115984362	chr11:115984362:G:T	rs1262514	G	T	G	Sox3.mouse_HMG_2	16	1	-	5.306369828847862	6.334066762389116	GAGCAATGATATTGGAC
chr11	116192638	116192639	chr11:116192639:C:T	rs79218286	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr11	116414820	116414821	chr11:116414821:G:A	rs563990	G	A	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr11	116529426	116529427	chr11:116529427:C:T	rs762438434	C	T	C	Sox3.mouse_HMG_2	6	1	+	6.077424061704019	12.466705496081913	AATCAACGGCAGTGAAG
chr11	116614865	116614866	chr11:116614866:T:A	rs477047	T	A	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr11	116614881	116614882	chr11:116614882:G:A	rs476362	G	A	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr11	116830957	116830958	chr11:116830958:T:A	rs2070666	T	A	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr11	116857560	116857561	chr11:116857561:G:A	rs11216162	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr11	116879909	116879910	chr11:116879910:G:A	rs116724830	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr11	116940058	116940059	chr11:116940059:T:C	rs79394589	T	C	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr11	117075521	117075522	chr11:117075522:C:T	rs12274388	C	T	C	Sox3.mouse_HMG_2	3	1	+	8.417330745618184	3.560474870395961	ATTCTATGTTATTGATT
chr11	117077725	117077726	chr11:117077726:A:G	rs4938336	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr11	117127081	117127082	chr11:117127082:C:T	rs6589597	C	T	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr11	117426875	117426876	chr11:117426876:T:A	chr11:117426876:T:A	T	A	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr11	117454151	117454152	chr11:117454152:G:A	rs10790186	G	A	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr11	117820659	117820660	chr11:117820660:G:T	rs11827585	G	T	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr11	117820670	117820671	chr11:117820671:G:A	rs869789	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr11	117823373	117823374	chr11:117823374:A:G	rs635706	A	G	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr11	117929984	117929985	chr11:117929985:C:T	rs10790223	C	T	c	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr11	117950362	117950363	chr11:117950363:G:A	rs145443171	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr11	118305381	118305382	chr11:118305382:A:G	rs3782040	A	G	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr11	118595231	118595232	chr11:118595232:A:C	rs76987598	A	C	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr11	118739919	118739920	chr11:118739920:A:G	rs521910	A	G	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr11	118834944	118834945	chr11:118834945:A:G	rs649338	A	G	G	Sox3.mouse_HMG_2	4	1	+	4.729376867674709	-1.659904566703182	TTTCATTGTTATTGTTA
chr11	119019189	119019190	chr11:119019190:T:G	rs781982243	T	G	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr11	119879102	119879103	chr11:119879103:G:T	rs11217551	G	T	G	Sox3.mouse_HMG_2	8	1	-	4.712180049399755	3.934173697806715	AATCAATTCTGTTGTTT
chr11	120010816	120010817	chr11:120010817:A:G	rs1893394	A	G	G	Sox3.mouse_HMG_2	1	1	+	3.3954157927213093	1.389027850701853	TATGAATGTCATTAAGT
chr11	120086842	120086843	chr11:120086843:T:C	rs185776522	T	C	T	Sox3.mouse_HMG_2	10	1	-	6.039108921244766	-0.8696458580704547	TTTCAATTTCATTGTCA
chr11	120099829	120099830	chr11:120099830:A:C	rs6589796	A	C	A	Sox3.mouse_HMG_2	11	1	-	2.574639350172692	1.1941171727588673	TATCAATGGTATGAAGG
chr11	120102152	120102153	chr11:120102153:T:G	rs7938843	T	G	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr11	120128482	120128483	chr11:120128483:A:G	rs569044	A	G	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr11	120235376	120235377	chr11:120235377:G:T	rs947906	G	T	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr11	120235386	120235387	chr11:120235387:C:T	rs150711302	C	T	C	Sox3.mouse_HMG_2	13	1	-	6.206184121798275	0.154545617611963	AATCAATTTTTTTGACT
chr11	120332918	120332919	chr11:120332919:G:A	rs12806740	G	A	A	Sox3.mouse_HMG_2	11	1	+	1.8586164211865328	-2.712867707146752	CATCACTGTTAGGGAAA
chr11	120332942	120332943	chr11:120332943:G:T	rs12364701	G	T	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr11	120471228	120471229	chr11:120471229:T:C	rs71484170	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.1549139911605137	-4.234367443217375	TATCCATTCTGTTGATA
chr11	120471247	120471248	chr11:120471248:A:G	rs114102253	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr11	120912607	120912608	chr11:120912608:G:A	rs143524866	G	A	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr11	120912621	120912622	chr11:120912622:T:C	rs57584368	T	C	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr11	120932731	120932732	chr11:120932732:A:G	chr11:120932732:A:G	A	G	A	Sox3.mouse_HMG_2	6	1	-	5.730969424671411	-0.6583120097064814	CTTCAATGTCATTTAAC
chr11	121135588	121135589	chr11:121135589:G:C	rs678275	G	C	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr11	121258138	121258139	chr11:121258139:G:A	rs73020048	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr11	121282711	121282712	chr11:121282712:G:A	rs7949987	G	A	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr11	121282745	121282746	chr11:121282746:A:T	rs10750182	A	T	a	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr11	121452767	121452768	chr11:121452768:G:C	rs578506	G	C	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr11	121514804	121514805	chr11:121514805:A:G	rs141310066	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr11	121572866	121572867	chr11:121572867:T:C	rs755547384	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.0521075169200724	-3.337173917457817	GCTCAATTACAGAGAAG
chr11	121665301	121665302	chr11:121665302:G:C	rs568599	G	C	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr11	121893199	121893200	chr11:121893200:C:T	rs17337418	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr11	121902046	121902047	chr11:121902047:G:A	rs3802910	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr11	121902083	121902084	chr11:121902084:T:A	rs3802909	T	A	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr11	121932805	121932806	chr11:121932806:T:A	rs1219444	T	A	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr11	121937272	121937273	chr11:121937273:A:G	rs7926019	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr11	121937315	121937316	chr11:121937316:G:A	rs1219451	G	A	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr11	122099560	122099561	chr11:122099561:C:T	rs643925	C	T	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	122190660	122190661	chr11:122190661:C:T	rs61909866	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr11	122791772	122791773	chr11:122791773:T:C	rs11218812	T	C	T	Sox3.mouse_HMG_2	2	1	+	4.41445525345882	-1.9524420530669253	GGTCAATGATTTTGACA
chr11	123064378	123064379	chr11:123064379:A:G	rs2276078	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr11	123153120	123153121	chr11:123153121:G:A	rs11821710	G	A	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	123326207	123326208	chr11:123326208:C:T	rs7119209	C	T	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr11	123330545	123330546	chr11:123330546:T:C	rs1361058258	T	C	T	Sox3.mouse_HMG_2	12	1	+	3.221018852074911	-2.829948285855905	AATCTATTGTAATGATT
chr11	123493778	123493779	chr11:123493779:A:G	rs12364429	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr11	123493785	123493786	chr11:123493786:A:G	rs61906275	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr11	123493810	123493811	chr11:123493811:A:C	rs953656609	A	C	A	Sox3.mouse_HMG_2	16	1	+	2.8997756507629333	1.8720787172216786	GAACAATGTTGTTAATA
chr11	123543742	123543743	chr11:123543743:A:G	rs1784356	A	G	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr11	123559266	123559267	chr11:123559267:G:A	rs702737	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr11	123559281	123559282	chr11:123559282:C:G	rs702736	C	G	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr11	123651896	123651897	chr11:123651897:G:C	rs73031649	G	C	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	123683837	123683838	chr11:123683838:G:T	rs12799073	G	T	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr11	123683877	123683878	chr11:123683878:C:G	rs1676623	C	G	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr11	123815095	123815096	chr11:123815096:G:A	rs17127760	G	A	G	Sox3.mouse_HMG_2	16	1	-	3.221774087337109	4.8247671369975595	CCTTAATGTCATTGTAC
chr11	123965091	123965092	chr11:123965092:C:T	rs79451923	C	T	C	Sox3.mouse_HMG_2	0	1	+	1.500374139299132	1.0152391250450232	CCTCATGGTTAGTGATT
chr11	124177364	124177365	chr11:124177365:C:T	rs4936905	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr11	124328931	124328932	chr11:124328932:C:T	rs4057919	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr11	124826021	124826022	chr11:124826022:A:G	rs111285852	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr11	124915737	124915738	chr11:124915738:C:T	rs61465638	C	T	C	Sox3.mouse_HMG_2	10	1	+	2.5604130604563946	2.5604130604563946	CCTGAATGGTCTTGATG
chr11	125313827	125313828	chr11:125313828:G:A	rs61684908	G	A	G	Sox3.mouse_HMG_2	1	1	+	3.0025001122226938	5.00888805424215	TGTCCATGGTATTGGAA
chr11	125321946	125321947	chr11:125321947:T:C	rs10893370	T	C	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr11	125386621	125386622	chr11:125386622:A:G	rs10736546	A	G	G	Sox3.mouse_HMG_2	16	1	+	4.839490722074602	5.051065148559853	GATTAATGATAGTGCTA
chr11	125390909	125390910	chr11:125390910:C:G	rs12419130	C	G	C	Sox3.mouse_HMG_2	0	1	-	1.7037963927289344	1.3991628752047465	GGTGAATACCAGTGATT
chr11	125517626	125517627	chr11:125517627:G:A	rs189740772	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr11	125622400	125622401	chr11:125622401:T:A	rs505232	T	A	T	Sox3.mouse_HMG_2	14	1	-	4.833951490210719	0.8145699664620729	TATTAATCATATTGATA
chr11	125623213	125623214	chr11:125623214:C:T	rs11220164	C	T	C	Sox3.mouse_HMG_2	11	1	+	2.3957517874624337	9.08012598692277	AATCCATGATACTGATT
chr11	125981159	125981160	chr11:125981160:A:G	rs564214	A	G	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr11	125990245	125990246	chr11:125990246:T:C	rs541614757	T	C	T	Sox3.mouse_HMG_2	1	1	-	2.202057963465978	0.19567002144652063	CATCCATGACAGTGGAA
chr11	125990265	125990266	chr11:125990266:G:T	rs7925077	G	T	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr11	126434366	126434367	chr11:126434367:C:T	rs35879271	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr11	126485531	126485532	chr11:126485532:G:A	rs11820177	G	A	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr11	126485537	126485538	chr11:126485538:C:T	rs369073051	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr11	126608412	126608413	chr11:126608413:T:A	rs479139	T	A	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr11	126608441	126608442	chr11:126608442:G:C	rs674875	G	C	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr11	126636905	126636906	chr11:126636906:T:C	rs7130480	T	C	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr11	126669729	126669730	chr11:126669730:C:T	rs11220579	C	T	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr11	126790714	126790715	chr11:126790715:C:T	rs1002768894	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr11	126830447	126830448	chr11:126830448:G:A	rs73026580	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr11	126891570	126891571	chr11:126891571:C:A	rs12271047	C	A	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr11	126891603	126891604	chr11:126891604:C:G	chr11:126891604:C:G	C	G	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr11	127014084	127014085	chr11:127014085:A:G	rs1287145	A	G	G	Sox3.mouse_HMG_2	10	1	+	5.089256329038663	-1.8194984502765574	AATGAATTTCAGTGGTG
chr11	127218319	127218320	chr11:127218320:A:T	rs4937227	A	T	A	Sox3.mouse_HMG_2	4	1	+	1.5604377610785494	-5.347637466714507	TATCATAGGTATTGAGT
chr11	127621026	127621027	chr11:127621027:C:T	rs74433549	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr11	127836504	127836505	chr11:127836505:T:C	rs12421672	T	C	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr11	127924618	127924619	chr11:127924619:A:T	rs1834312	A	T	T	Sox3.mouse_HMG_2	2	1	-	3.183295498494566	-0.09836127728896954	GATAAAAGACATTGATT
chr11	128171686	128171687	chr11:128171687:G:A	rs7933438	G	A	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr11	128293312	128293313	chr11:128293313:C:T	rs34415928	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr11	128354738	128354739	chr11:128354739:T:C	rs10450612	T	C	T	Sox3.mouse_HMG_2	1	1	+	3.276887130683817	3.2566691533931724	GTTGAATTGCAGTGGTG
chr11	128409678	128409679	chr11:128409679:C:T	rs113064913	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr11	128533069	128533070	chr11:128533070:C:T	rs145437967	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr11	128533108	128533109	chr11:128533109:G:A	rs11825217	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr11	128565679	128565680	chr11:128565680:G:A	rs7102538	G	A	A	Sox3.mouse_HMG_2	11	1	+	2.2543485025184737	-2.3171356258148115	CTTCAATTTCTGTGACA
chr11	128983244	128983245	chr11:128983245:C:T	rs73029243	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr11	129276179	129276180	chr11:129276180:T:G	chr11:129276180:T:G	T	G	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr11	129369195	129369196	chr11:129369196:C:A	rs12294383	C	A	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr11	129369213	129369214	chr11:129369214:C:T	rs1456003547	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr11	129428216	129428217	chr11:129428217:A:G	rs12573893	A	G	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr11	129681497	129681498	chr11:129681498:A:G	rs11221802	A	G	a	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr11	129842123	129842124	chr11:129842124:C:A	rs10894152	C	A	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr11	129992867	129992868	chr11:129992868:C:G	rs147131193	C	G	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr11	130087874	130087875	chr11:130087875:T:G	rs10431049	T	G	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr11	130179998	130179999	chr11:130179999:C:T	rs766538515	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr11	130201003	130201004	chr11:130201004:A:G	rs513461	A	G	G	Sox3.mouse_HMG_2	4	1	+	5.277544973329741	-1.1117364610481497	CACCAATGATAGTGACA
chr11	130633427	130633428	chr11:130633428:C:A	rs11825503	C	A	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr11	130825876	130825877	chr11:130825877:C:T	rs114579854	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr11	130830640	130830641	chr11:130830641:C:T	rs75618525	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr11	130848815	130848816	chr11:130848816:T:G	rs10791098	T	G	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr11	130890307	130890308	chr11:130890308:C:T	rs7937514	C	T	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr11	130894553	130894554	chr11:130894554:G:T	rs11222379	G	T	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr11	131036859	131036860	chr11:131036860:T:C	rs1655489	T	C	C	Sox3.mouse_HMG_2	6	1	+	3.705401659134336	-2.6838797752435544	GCTCAATGATCTTGACA
chr11	131327535	131327536	chr11:131327536:T:A	rs2511505	T	A	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr11	131468606	131468607	chr11:131468607:T:A	rs185086031	T	A	T	Sox3.mouse_HMG_2	0	1	+	3.644300691220794	2.7375769292964254	TGTCAATGTCATTTGAA
chr11	131511502	131511503	chr11:131511503:T:C	rs415448	T	C	T	Sox3.mouse_HMG_2	6	1	+	1.8113414632991853	-4.577939971078705	CAGCAATGCTAGTGCCT
chr11	131678631	131678632	chr11:131678632:G:A	rs2658833	G	A	A	Sox3.mouse_HMG_2	10	1	-	2.6065690367904875	2.6065690367904875	GAGCAATGCCCTTGAGG
chr11	131765021	131765022	chr11:131765022:G:A	rs73039741	G	A	G	Sox3.mouse_HMG_2	0	1	+	1.7026928722626815	0.006200578560019029	GCTCACTGGTAGTGGAA
chr11	131961713	131961714	chr11:131961714:A:G	rs481442	A	G	A	Sox3.mouse_HMG_2	12	1	-	1.296411440084399	-4.754555697846418	TCTCAGGGCTATTGATG
chr11	132175196	132175197	chr11:132175197:A:G	rs7950239	A	G	G	Sox3.mouse_HMG_2	4	1	+	2.8544329702381397	-3.5348484641397495	CAGCAATGGTGTTGGTG
chr11	132209263	132209264	chr11:132209264:T:C	rs6590630	T	C	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr11	132347384	132347385	chr11:132347385:T:C	rs61906052	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr11	132692598	132692599	chr11:132692599:G:A	rs3018396	G	A	G	Sox3.mouse_HMG_2	3	1	-	2.4326648308294274	-2.424191044392793	TTTCTATTGCAGTGAAA
chr11	132910138	132910139	chr11:132910139:C:T	rs11223275	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr11	132910175	132910176	chr11:132910176:G:A	rs749422630	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr11	132941171	132941172	chr11:132941172:G:C	rs150452918	G	C	G	Sox3.mouse_HMG_2	8	1	-	4.0018420504591	4.442626083610558	CTTCAATTCTAATGTTG
chr11	133062768	133062769	chr11:133062769:C:T	rs10894645	C	T	C	Sox3.mouse_HMG_2	11	1	-	4.8418269020784	0.2703427737451149	GATCAATGACAGGGTTG
chr11	133916694	133916695	chr11:133916695:A:G	rs3824992	A	G	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr11	134119602	134119603	chr11:134119603:A:G	rs7946580	A	G	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr11	134345318	134345319	chr11:134345319:C:G	rs75552486	C	G	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr11	134506727	134506728	chr11:134506728:A:G	rs11604268	A	G	G	Sox3.mouse_HMG_2	15	1	-	2.4468648088345204	-1.3329346086712752	ACTCAAGTGCATTGGTT
chr11	134521698	134521699	chr11:134521699:C:T	rs12420612	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr11	134641315	134641316	chr11:134641316:C:A	rs11223922	C	A	T	Sox3.mouse_HMG_2	13	1	-	3.867040530592519	-2.520219508334693	GATCCATGGCAGTGGGT
chr11	134677381	134677382	chr11:134677382:G:A	rs61910800	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr11	134741070	134741071	chr11:134741071:C:T	rs60622467	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr11	134741820	134741821	chr11:134741821:C:T	rs11223978	C	T	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr11	134743267	134743268	chr11:134743268:C:T	chr11:134743268:C:T	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr11	134743276	134743277	chr11:134743277:C:T	rs7934611	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr11	134754776	134754777	chr11:134754777:A:G	rs10894870	A	G	A	Sox3.mouse_HMG_2	1	1	-	7.42414793073644	7.403929953445797	GTACAATTGCAGTGAAT
chr11	135033688	135033689	chr11:135033689:C:T	rs12575376	C	T	c	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr11	135068575	135068576	chr11:135068576:G:A	rs4338544	G	A	.	Sox3.mouse_HMG_2	0	1	-	1.6874039937577812	1.2022689795036725	CATCAGTGCTAGTGGCC
chr12	49219	49220	chr12:49220:C:A	rs11061693	C	A	.	Sox3.mouse_HMG_2	3	1	-	6.736683901502296	7.930347336169371	GAAGAATTCCATTGATA
chr12	54049	54050	chr12:54050:C:T	rs901013837	C	T	.	Sox3.mouse_HMG_2	8	1	+	1.866697218196718	3.121119184352388	CCTCAAAGCCAGTGTTA
chr12	119781	119782	chr12:119782:C:G	rs10849572	C	G	.	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr12	141469	141470	chr12:141470:G:A	rs79718529	G	A	G	Sox3.mouse_HMG_2	1	1	+	3.416091161580648	5.422479103600105	CGTCAGAGTCATTGATT
chr12	240539	240540	chr12:240540:A:C	rs61906962	A	C	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr12	402207	402208	chr12:402208:T:C	rs78985787	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr12	641528	641529	chr12:641529:T:A	rs7307242	T	A	t	Sox3.mouse_HMG_2	1	1	-	1.3920594389880119	-1.3031641200652844	TATCAGAGCTAGTGATC
chr12	810790	810791	chr12:810791:G:A	rs36092349	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr12	1307425	1307426	chr12:1307426:C:T	rs16928347	C	T	T	Sox3.mouse_HMG_2	11	1	-	3.746620343860446	-0.8248637844728401	ACTCAATTTCAGTGTGC
chr12	1319186	1319187	chr12:1319187:C:T	rs7975854	C	T	T	Sox3.mouse_HMG_2	0	1	+	3.8583991008117744	3.3732640865576657	CGTCAGTTTTATTGCTT
chr12	1521388	1521389	chr12:1521389:A:G	rs12810561	A	G	A	Sox3.mouse_HMG_2	1	1	+	2.3260535987071536	0.3196656566876954	GAACCATTTCATTGACC
chr12	1551976	1551977	chr12:1551977:A:G	rs7315539	A	G	G	Sox3.mouse_HMG_2	2	1	-	2.764693783481483	-3.6022035230442606	CCTCAATTACAGTGGCC
chr12	1668105	1668106	chr12:1668106:G:A	rs11612778	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr12	1802221	1802222	chr12:1802222:T:C	rs73043810	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr12	1928139	1928140	chr12:1928140:C:T	rs117828485	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr12	1955467	1955468	chr12:1955468:A:G	rs35252166	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr12	2244240	2244241	chr12:2244241:C:A	rs77175673	C	A	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr12	2277248	2277249	chr12:2277249:C:A	rs76721755	C	A	C	Sox3.mouse_HMG_2	7	1	-	3.9391249153640855	2.8132337015188407	TGTTAATGACAGTGTTT
chr12	2304436	2304437	chr12:2304437:C:A	rs112809974	C	A	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr12	2318423	2318424	chr12:2318424:C:T	rs141094695	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr12	2328999	2329000	chr12:2329000:G:A	rs2239049	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr12	2676294	2676295	chr12:2676295:T:C	rs11062310	T	C	C	Sox3.mouse_HMG_2	15	1	+	4.499680752388623	0.7198813348828274	CATCACTGCTATGGATG
chr12	2782269	2782270	chr12:2782270:T:A	rs6489400	T	A	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr12	3122776	3122777	chr12:3122777:T:C	rs7955810	T	C	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr12	3219244	3219245	chr12:3219245:T:C	rs73043504	T	C	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr12	3230263	3230264	chr12:3230264:C:T	rs3782813	C	T	C	Sox3.mouse_HMG_2	8	1	+	2.8363143877143804	4.090736353870051	GATGAATGCTTTTGAAG
chr12	3238458	3238459	chr12:3238459:G:A	rs79901044	G	A	G	Sox3.mouse_HMG_2	1	1	+	7.925801369142271	9.932189311161729	CGTGAATGTCATTGAGT
chr12	3255569	3255570	chr12:3255570:C:T	rs76805954	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr12	3313169	3313170	chr12:3313170:T:A	rs116744312	T	A	T	Sox3.mouse_HMG_2	6	1	+	1.632906490370716	-5.275168737422339	GCTCCATGACAGTGACA
chr12	3343352	3343353	chr12:3343353:A:C	rs7968638	A	C	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr12	4330436	4330437	chr12:4330437:T:C	rs11063085	T	C	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr12	4388710	4388711	chr12:4388711:G:A	rs12299639	G	A	G	Sox3.mouse_HMG_2	9	1	-	1.135688480798295	1.828341023670255	GATCAATGGCCTGGACT
chr12	4418155	4418156	chr12:4418156:C:T	rs2160875	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr12	4421656	4421657	chr12:4421657:C:T	rs139059198	C	T	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr12	4836848	4836849	chr12:4836849:T:C	rs7955352	T	C	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr12	4857047	4857048	chr12:4857048:G:A	rs4631963	G	A	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr12	4881524	4881525	chr12:4881525:G:A	rs12818113	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr12	4908777	4908778	chr12:4908778:G:C	rs78057813	G	C	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr12	4947368	4947369	chr12:4947369:G:A	rs7955054	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr12	5021971	5021972	chr12:5021972:A:C	rs1860421	A	C	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr12	5189350	5189351	chr12:5189351:C:T	rs2159601	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr12	5807236	5807237	chr12:5807237:C:T	rs71579288	C	T	T	Sox3.mouse_HMG_2	15	1	-	3.6436123868285	4.077349838089841	TTTCAGTGGCAGTGAGA
chr12	5807267	5807268	chr12:5807268:A:C	rs71579287	A	C	c	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr12	6029976	6029977	chr12:6029977:A:G	rs36067650	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr12	6087133	6087134	chr12:6087134:A:G	rs11064019	A	G	G	Sox3.mouse_HMG_2	15	1	-	2.616274095357968	-1.1635253221478277	CATCAATTGCAGTCCTG
chr12	6087147	6087148	chr12:6087148:T:C	rs11064020	T	C	T	Sox3.mouse_HMG_2	1	1	-	2.616274095357968	0.6098861533385099	CATCAATTGCAGTCCTG
chr12	6171417	6171418	chr12:6171418:A:G	rs10744699	A	G	a	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr12	6286510	6286511	chr12:6286511:C:A	chr12:6286511:C:A	C	A	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr12	6543405	6543406	chr12:6543406:A:G	rs7132298	A	G	G	Sox3.mouse_HMG_2	1	1	-	3.015215831612205	2.9949978543215594	CTGTAATGCCAGTGATG
chr12	6725901	6725902	chr12:6725902:A:G	rs7487866	A	G	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr12	6789354	6789355	chr12:6789355:G:C	rs2855534	G	C	c	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr12	7064315	7064316	chr12:7064316:C:T	rs7965055	C	T	C	Sox3.mouse_HMG_2	0	1	+	10.630499816736725	10.145364802482616	CAACAATTTCATTGGTG
chr12	7083439	7083440	chr12:7083440:T:G	rs949843424	T	G	t	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr12	7571841	7571842	chr12:7571842:T:C	rs11054513	T	C	T	Sox3.mouse_HMG_2	12	1	+	6.428808246470473	0.3778411085396569	CTTGAATGCTAGTGATC
chr12	7584728	7584729	chr12:7584729:T:C	rs2377089	T	C	T	Sox3.mouse_HMG_2	16	1	-	4.897395842947906	5.108970269433156	CTTCAATGATGTTGAAA
chr12	7608776	7608777	chr12:7608777:A:C	rs1419976	A	C	A	Sox3.mouse_HMG_2	12	1	-	3.284240445876267	-3.1023482267954496	CATCAACTGTAGTGGGG
chr12	7679850	7679851	chr12:7679851:A:C	rs7979377	A	C	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr12	7679865	7679866	chr12:7679866:G:A	rs7962576	G	A	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr12	7832721	7832722	chr12:7832722:C:A	rs10846018	C	A	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr12	7907245	7907246	chr12:7907246:T:C	chr12:7907246:T:C	T	C	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr12	8389019	8389020	chr12:8389020:T:C	rs149903928	T	C	.	Sox3.mouse_HMG_2	5	1	-	3.165592972935549	-3.2236884614423413	TTACAATGGCAGTGTAA
chr12	8449827	8449828	chr12:8449828:T:A	rs11045398	T	A	.	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr12	9706566	9706567	chr12:9706567:G:A	rs921875987	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr12	9971933	9971934	chr12:9971934:T:C	rs1797526	T	C	-	Sox3.mouse_HMG_2	10	1	-	3.9495677752052374	-2.959187004109984	TCCCAATTATATTGAGT
chr12	10098557	10098558	chr12:10098558:T:A	rs6488256	T	A	T	Sox3.mouse_HMG_2	14	1	-	3.6884621482192053	-0.3309193755294401	CTTCAGTTCTAGTGAAA
chr12	10140241	10140242	chr12:10140242:G:A	rs74060584	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr12	10140259	10140260	chr12:10140260:A:G	rs7305796	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.599403051899021	-2.789878382478868	AATCTATTTTATTCATT
chr12	10244375	10244376	chr12:10244376:A:G	chr12:10244376:A:G	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr12	10311417	10311418	chr12:10311418:T:A	rs17206564	T	A	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr12	10555400	10555401	chr12:10555401:A:G	chr12:10555401:A:G	A	G	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr12	10558166	10558167	chr12:10558167:A:G	rs7959753	A	G	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr12	10670308	10670309	chr12:10670309:T:C	rs7967162	T	C	c	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr12	10849699	10849700	chr12:10849700:C:A	chr12:10849700:C:A	C	A	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr12	11127134	11127135	chr12:11127135:G:A	rs201366803	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr12	11305457	11305458	chr12:11305458:T:C	rs11054242	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr12	11729327	11729328	chr12:11729328:A:G	rs1270942580	A	G	A	Sox3.mouse_HMG_2	9	1	-	5.32090772492588	4.628255182053921	CTTCAATTCTAGTGCTC
chr12	11820924	11820925	chr12:11820925:G:A	rs78964385	G	A	G	Sox3.mouse_HMG_2	16	1	-	1.2036130794817534	2.8066061291422044	GATCATTGTTACTGGTC
chr12	11963199	11963200	chr12:11963200:T:A	rs10772516	T	A	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr12	12099178	12099179	chr12:12099179:T:G	rs367916967	T	G	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr12	12268068	12268069	chr12:12268069:T:C	rs149015103	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr12	12470856	12470857	chr12:12470857:C:T	rs2287204	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr12	12894220	12894221	chr12:12894221:G:A	rs11055133	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr12	12966113	12966114	chr12:12966114:C:T	rs1642197	C	T	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr12	12983553	12983554	chr12:12983554:C:T	rs735688	C	T	C	Sox3.mouse_HMG_2	15	1	-	3.6023252991983146	4.036062750459656	AAGCAATGTTAATGAGA
chr12	13081900	13081901	chr12:13081901:G:A	rs923777821	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr12	13174438	13174439	chr12:13174439:A:G	rs11055263	A	G	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr12	13190900	13190901	chr12:13190901:G:A	rs5010913	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr12	13345446	13345447	chr12:13345447:C:T	rs10772655	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr12	13431065	13431066	chr12:13431066:G:A	rs4763987	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr12	13570315	13570316	chr12:13570316:A:G	rs78142938	A	G	A	Sox3.mouse_HMG_2	9	1	-	4.433537927867927	3.740885384995967	TATTATTTTTATTGATC
chr12	14235533	14235534	chr12:14235534:G:A	rs4763373	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr12	14362769	14362770	chr12:14362770:C:T	rs7311765	C	T	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr12	14371986	14371987	chr12:14371987:A:G	rs7313245	A	G	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr12	14411276	14411277	chr12:14411277:G:A	rs113137202	G	A	G	Sox3.mouse_HMG_2	3	1	-	2.772777579149934	-2.084078296072287	TGGCAATGATATGGATA
chr12	14418879	14418880	chr12:14418880:G:A	rs7967823	G	A	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr12	14535709	14535710	chr12:14535710:C:T	rs7957558	C	T	T	Sox3.mouse_HMG_2	7	1	-	3.0090675182898536	-3.619753976798203	CTTCAACGTCATAGATA
chr12	14836490	14836491	chr12:14836491:T:C	rs116873427	T	C	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr12	14858789	14858790	chr12:14858790:T:C	rs7971527	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr12	14962940	14962941	chr12:14962941:C:T	rs7968816	C	T	C	Sox3.mouse_HMG_2	7	1	-	4.126473220777891	-2.502348274310165	GATAAATGTTATGGAAT
chr12	15171696	15171697	chr12:15171697:T:C	rs12815540	T	C	T	Sox3.mouse_HMG_2	16	1	-	7.370696836690259	7.582271263175509	TTTTAATTTTATTGAAA
chr12	15330003	15330004	chr12:15330004:G:A	rs78483612	G	A	G	Sox3.mouse_HMG_2	7	1	+	1.8938699018799348	-4.734951593208122	TATCAAAGGCAATGAAG
chr12	15364444	15364445	chr12:15364445:T:G	rs56029389	T	G	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr12	15535112	15535113	chr12:15535113:A:T	rs144765680	A	T	A	Sox3.mouse_HMG_2	0	1	-	5.206525849212437	4.299802087288071	TCTCAATCTCAGTGAAT
chr12	15881633	15881634	chr12:15881634:G:T	rs7960635	G	T	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr12	16194373	16194374	chr12:16194374:G:A	rs3942536	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr12	16282202	16282203	chr12:16282203:T:A	rs16911788	T	A	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr12	17205754	17205755	chr12:17205755:A:G	rs1513050	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr12	17225508	17225509	chr12:17225509:A:G	rs35473923	A	G	A	Sox3.mouse_HMG_2	2	1	-	6.880925286432329	0.5140279799065851	AGTCAACTCTATTGATG
chr12	18040535	18040536	chr12:18040536:T:G	rs12833510	T	G	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr12	18387444	18387445	chr12:18387445:G:A	rs12371012	G	A	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr12	18589483	18589484	chr12:18589484:T:C	rs147008464	T	C	T	Sox3.mouse_HMG_2	12	1	+	3.040553617046661	-3.010413520884156	TATGAATTCCAGTGACC
chr12	18819669	18819670	chr12:18819670:G:A	rs3962579	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr12	19239367	19239368	chr12:19239368:G:C	rs118163426	G	C	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr12	19261907	19261908	chr12:19261908:C:G	rs11044468	C	G	C	Sox3.mouse_HMG_2	11	1	-	4.926498895079948	-0.3773531269665629	AAACAATTCTAGTAATT
chr12	19261930	19261931	chr12:19261931:T:C	rs7979972	T	C	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr12	19547417	19547418	chr12:19547418:A:C	chr12:19547418:A:C	A	C	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr12	19641186	19641187	chr12:19641187:C:T	rs7313438	C	T	c	Sox3.mouse_HMG_2	15	1	-	3.840572521463325	4.274309972724666	GATGAATGTCATTGCGG
chr12	19695152	19695153	chr12:19695153:T:G	rs11044776	T	G	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr12	19886530	19886531	chr12:19886531:A:G	rs2417814	A	G	G	Sox3.mouse_HMG_2	1	1	+	8.137377567106599	6.13098962508714	CATAAATGTCATTGGTG
chr12	19916204	19916205	chr12:19916205:G:A	rs74875505	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr12	20018058	20018059	chr12:20018059:G:C	rs10743349	G	C	G	Sox3.mouse_HMG_2	0	1	+	3.504330572713471	3.199697055189283	GATCAATTTTATTTCAG
chr12	20018059	20018060	chr12:20018060:A:G	rs2728592	A	G	G	Sox3.mouse_HMG_2	1	1	+	3.504330572713471	1.4979426306940105	GATCAATTTTATTTCAG
chr12	20038726	20038727	chr12:20038727:A:G	rs2417817	A	G	A	Sox3.mouse_HMG_2	2	1	-	9.446433882898663	3.079536576372916	TATCAATTTTATTAAAT
chr12	20249232	20249233	chr12:20249233:A:G	rs61911303	A	G	A	Sox3.mouse_HMG_2	13	1	-	4.285536992331179	4.285536992331179	TATCAATTGCATTTTTC
chr12	20256257	20256258	chr12:20256258:G:A	rs274975	G	A	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr12	20305810	20305811	chr12:20305811:C:T	rs868835762	C	T	C	Sox3.mouse_HMG_2	13	1	-	3.0543361333228294	-2.997302370863482	GATTAATGTCAGCGGTG
chr12	20457904	20457905	chr12:20457905:T:C	rs7487173	T	C	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr12	20494250	20494251	chr12:20494251:A:G	rs12308852	A	G	A	Sox3.mouse_HMG_2	12	1	+	4.836124360795957	4.500502826055058	ATTCAATTTTATAGAGA
chr12	20494903	20494904	chr12:20494904:C:G	rs7487227	C	G	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr12	20833126	20833127	chr12:20833127:A:G	rs12824927	A	G	A	Sox3.mouse_HMG_2	6	1	+	4.811767512658722	4.811767512658722	GTTCAAAGCTAGTGAAG
chr12	21305725	21305726	chr12:21305726:T:C	rs11838023	T	C	T	Sox3.mouse_HMG_2	11	1	+	9.358463352546076	2.674089153085741	TATTAATGTCATTGTTT
chr12	21540014	21540015	chr12:21540015:A:G	rs1871130	A	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr12	21672266	21672267	chr12:21672267:G:T	rs7133519	G	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr12	21771601	21771602	chr12:21771602:T:C	rs767351726	T	C	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr12	21819370	21819371	chr12:21819371:T:C	rs7309274	T	C	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr12	22049620	22049621	chr12:22049621:T:C	rs10841928	T	C	T	Sox3.mouse_HMG_2	15	1	+	3.773471266724829	-0.006328150780966768	TATCAATGGTGGCGATT
chr12	22209486	22209487	chr12:22209487:T:C	rs10770899	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.148416254170166	-2.240865180207723	TATCAATTTCCTTAATT
chr12	22880791	22880792	chr12:22880792:G:A	rs11046673	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr12	23838382	23838383	chr12:23838383:C:T	rs9669660	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr12	24038259	24038260	chr12:24038260:G:C	rs17483104	G	C	G	Sox3.mouse_HMG_2	5	1	+	0.8945609023958979	0.37576710898073035	TGTCAGTGGCAGGGATG
chr12	24199605	24199606	chr12:24199606:T:C	rs991789898	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr12	24232681	24232682	chr12:24232682:A:G	rs2728841	A	G	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr12	24282041	24282042	chr12:24282042:A:C	rs775001	A	C	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr12	24300518	24300519	chr12:24300519:G:A	rs565934	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr12	24345802	24345803	chr12:24345803:T:A	rs4573776	T	A	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr12	24472242	24472243	chr12:24472243:C:T	rs11047466	C	T	C	Sox3.mouse_HMG_2	1	1	-	3.6521239100007135	5.658511852020172	TGTCAATCCCAGTGAGA
chr12	24770870	24770871	chr12:24770871:G:T	rs12305601	G	T	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr12	24814535	24814536	chr12:24814536:T:C	rs6487419	T	C	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr12	24944671	24944672	chr12:24944672:C:T	rs2242399	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr12	24956638	24956639	chr12:24956639:G:C	rs4590976	G	C	g	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr12	25023934	25023935	chr12:25023935:G:A	rs11047765	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr12	25074354	25074355	chr12:25074355:C:T	rs80183639	C	T	C	Sox3.mouse_HMG_2	3	1	+	2.0321412600596926	-2.8247146151625278	CAACATTTCCAGTGAGT
chr12	25074367	25074368	chr12:25074368:T:C	rs10842458	T	C	C	Sox3.mouse_HMG_2	16	1	+	2.0321412600596926	0.42914821039924167	CAACATTTCCAGTGAGT
chr12	25188188	25188189	chr12:25188189:A:C	rs11611468	A	C	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr12	25243100	25243101	chr12:25243101:C:T	rs2970532	C	T	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr12	25251440	25251441	chr12:25251441:T:C	rs370324187	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr12	25276805	25276806	chr12:25276806:G:C	rs10743554	G	C	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr12	25276833	25276834	chr12:25276834:A:C	rs10743555	A	C	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr12	25276845	25276846	chr12:25276846:C:T	rs11047928	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr12	25327487	25327488	chr12:25327488:C:T	rs7970784	C	T	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr12	25699539	25699540	chr12:25699540:G:A	rs12301644	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr12	25718919	25718920	chr12:25718920:T:C	rs6487510	T	C	T	Sox3.mouse_HMG_2	16	1	-	5.238391248587398	5.449965675072648	GGGGAATGTCATTGATA
chr12	25760031	25760032	chr12:25760032:A:G	rs1462721	A	G	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr12	25776497	25776498	chr12:25776498:C:G	rs12296851	C	G	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr12	25856241	25856242	chr12:25856242:A:T	rs1179590	A	T	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr12	25935490	25935491	chr12:25935491:G:C	rs16929667	G	C	G	Sox3.mouse_HMG_2	1	1	-	1.9397899902054216	2.6488435845299048	CCACAATGCTTTTGAGA
chr12	25997759	25997760	chr12:25997760:A:G	rs74071351	A	G	A	Sox3.mouse_HMG_2	10	1	+	2.8307842727383448	-4.077970506576876	GAAGAATTTCAGTGACA
chr12	26058738	26058739	chr12:26058739:T:G	rs7139241	T	G	T	Sox3.mouse_HMG_2	0	1	-	8.215533499681676	9.607392275860152	ATTCAATTTGATTGATT
chr12	26157317	26157318	chr12:26157318:C:A	rs4963965	C	A	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr12	26227721	26227722	chr12:26227722:C:T	rs61914487	C	T	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr12	26435332	26435333	chr12:26435333:G:T	rs7966599	G	T	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr12	26563904	26563905	chr12:26563905:T:A	rs55861094	T	A	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr12	26691931	26691932	chr12:26691932:C:T	rs111449975	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr12	26691935	26691936	chr12:26691936:T:C	rs11834048	T	C	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr12	26990574	26990575	chr12:26990575:G:A	rs10771314	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr12	27003712	27003713	chr12:27003713:G:C	rs61923437	G	C	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr12	27303124	27303125	chr12:27303125:T:C	rs2100839	T	C	T	Sox3.mouse_HMG_2	11	1	+	3.785813758833235	-2.8985604406271004	TATGAATTTCTTTGATG
chr12	27335548	27335549	chr12:27335549:G:A	rs12823225	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr12	27478911	27478912	chr12:27478912:G:T	rs439865	G	T	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr12	27516915	27516916	chr12:27516916:C:T	rs421522	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr12	27584140	27584141	chr12:27584141:T:C	rs7966539	T	C	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr12	27584156	27584157	chr12:27584157:A:T	rs61121519	A	T	A	Sox3.mouse_HMG_2	8	1	-	4.579677612244446	2.5472492944957374	TGTCAGTGTTAATGATT
chr12	27591877	27591878	chr12:27591878:C:T	rs11049060	C	T	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr12	27806971	27806972	chr12:27806972:C:T	rs7311374	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr12	27842113	27842114	chr12:27842114:G:T	rs11049193	G	T	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr12	28512425	28512426	chr12:28512426:C:T	rs11049684	C	T	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr12	28698712	28698713	chr12:28698713:A:G	rs76618426	A	G	A	Sox3.mouse_HMG_2	12	1	-	2.2439789156264567	-3.8069882223043594	CATAATTGTCATTGAAG
chr12	28852316	28852317	chr12:28852317:T:C	rs12366294	T	C	C	Sox3.mouse_HMG_2	6	1	+	2.5663879641985035	-3.822893470179386	CATCCATGGTATTCAGT
chr12	28934298	28934299	chr12:28934299:T:C	rs1844257	T	C	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr12	29255005	29255006	chr12:29255006:G:C	rs10743651	G	C	C	Sox3.mouse_HMG_2	13	1	+	8.241926330277206	1.8546662913499925	TATCAATGATTGTGATG
chr12	29317003	29317004	chr12:29317004:G:A	rs75418976	G	A	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr12	29415344	29415345	chr12:29415345:T:C	rs1436315	T	C	T	Sox3.mouse_HMG_2	9	1	+	6.408686307982258	5.7160337651103	GCTAAATGGTATTGAAA
chr12	29543237	29543238	chr12:29543238:C:G	rs12426386	C	G	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr12	29675824	29675825	chr12:29675825:A:T	rs10743669	A	T	A	Sox3.mouse_HMG_2	11	1	-	5.81698131920246	-0.1350249865446504	GAACAATGCTATTAAGA
chr12	29675833	29675834	chr12:29675834:T:C	rs10771568	T	C	T	Sox3.mouse_HMG_2	2	1	-	5.81698131920246	3.9447634283061053	GAACAATGCTATTAAGA
chr12	29715176	29715177	chr12:29715177:T:C	rs302376	T	C	T	Sox3.mouse_HMG_2	5	1	-	5.8039329468513685	-0.5853484875265211	CTTCAATTTTGTTGAAA
chr12	29885109	29885110	chr12:29885110:C:T	rs12227846	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr12	30344195	30344196	chr12:30344196:G:C	rs10843724	G	C	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr12	30988277	30988278	chr12:30988278:T:C	rs35081	T	C	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr12	31026649	31026650	chr12:31026650:T:C	rs2287454	T	C	t	Sox3.mouse_HMG_2	11	1	+	2.2242579613268103	-4.460116238133525	CAGCAATTGCATTGTCC
chr12	31086398	31086399	chr12:31086399:T:C	rs4012619	T	C	T	Sox3.mouse_HMG_2	0	1	-	3.4498951535169855	5.146387447219647	ACTCGATTTTATTGAGC
chr12	31215779	31215780	chr12:31215780:C:T	rs148727343	C	T	.	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr12	31370831	31370832	chr12:31370832:G:C	rs77625685	G	C	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr12	31522020	31522021	chr12:31522021:T:A	rs76952346	T	A	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr12	31586885	31586886	chr12:31586886:T:G	rs148389959	T	G	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr12	31714921	31714922	chr12:31714922:A:C	rs7295568	A	C	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr12	31817271	31817272	chr12:31817272:G:A	rs36123158	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr12	31853805	31853806	chr12:31853806:C:T	rs111744397	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr12	31890827	31890828	chr12:31890828:T:C	rs147399801	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr12	31890829	31890830	chr12:31890830:G:A	rs1624791	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr12	31958673	31958674	chr12:31958674:A:G	rs6488020	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.3455398842078465	-3.0437415501700427	TAGCAATTTGATTGGTT
chr12	32047902	32047903	chr12:32047903:G:C	rs1684126	G	C	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr12	32245382	32245383	chr12:32245383:A:G	rs326639	A	G	A	Sox3.mouse_HMG_2	10	1	+	3.477064255018403	-3.4316905242968176	GCTCAATTCAAGTGACT
chr12	32674857	32674858	chr12:32674858:A:T	rs114279240	A	T	T	Sox3.mouse_HMG_2	6	1	-	3.811110917979067	-3.09696430981399	CCACAATTTTAGTGGCT
chr12	32777602	32777603	chr12:32777603:G:A	rs7959288	G	A	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr12	32780102	32780103	chr12:32780103:A:G	rs7977414	A	G	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr12	32801350	32801351	chr12:32801351:C:T	rs56798911	C	T	T	Sox3.mouse_HMG_2	7	1	-	7.507680879092391	0.8788593840043324	CTTCAATGGCAGTGTAT
chr12	33057848	33057849	chr12:33057849:C:T	rs17553894	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr12	33640934	33640935	chr12:33640935:G:A	rs75180006	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr12	34022365	34022366	chr12:34022366:C:T	rs12372721	C	T	C	Sox3.mouse_HMG_2	3	1	+	2.0060327305886405	-2.8508231446335826	GGGCAATGCGATTGAGA
chr12	38393199	38393200	chr12:38393200:G:A	rs6582675	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr12	38409839	38409840	chr12:38409840:T:C	rs188007539	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr12	38556152	38556153	chr12:38556153:G:C	rs9805091	G	C	G	Sox3.mouse_HMG_2	3	1	-	3.9057338386862632	-2.1447854712030336	AAACAGTTTTATTGGTT
chr12	38661862	38661863	chr12:38661863:A:T	rs77598568	A	T	A	Sox3.mouse_HMG_2	11	1	-	3.985311624957543	-1.9666946807895656	TATCACATTTATTGATT
chr12	39174088	39174089	chr12:39174089:A:G	rs7300022	A	G	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr12	39451550	39451551	chr12:39451551:T:G	rs11172174	T	G	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr12	39886149	39886150	chr12:39886150:G:C	rs2029971	G	C	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr12	39914170	39914171	chr12:39914171:G:A	rs10877772	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr12	40100326	40100327	chr12:40100327:T:C	rs10784369	T	C	C	Sox3.mouse_HMG_2	15	1	+	3.46189753740596	-0.3179018800998357	TATCAAATTTAGAGATT
chr12	40287602	40287603	chr12:40287603:C:A	chr12:40287603:C:A	C	A	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr12	40650356	40650357	chr12:40650357:C:T	rs66524047	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr12	40972352	40972353	chr12:40972353:A:G	rs10879443	A	G	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr12	41247947	41247948	chr12:41247948:A:G	rs80236956	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr12	41439914	41439915	chr12:41439915:G:C	rs1458168	G	C	G	Sox3.mouse_HMG_2	13	1	+	5.946171163231387	-0.4410888756958247	CTTCTATTTTATTGAGT
chr12	41565049	41565050	chr12:41565050:A:G	rs7973550	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr12	41605970	41605971	chr12:41605971:C:T	rs366921	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr12	41628192	41628193	chr12:41628193:T:C	rs61940407	T	C	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr12	41801961	41801962	chr12:41801962:G:A	rs1497159	G	A	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr12	42742822	42742823	chr12:42742823:A:G	rs77717406	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr12	42985554	42985555	chr12:42985555:T:C	rs117228757	T	C	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr12	43098552	43098553	chr12:43098553:G:A	rs1656532	G	A	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr12	43208807	43208808	chr12:43208808:A:C	chr12:43208808:A:C	A	C	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr12	43333221	43333222	chr12:43333222:G:A	rs10880457	G	A	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr12	43586254	43586255	chr12:43586255:C:T	rs957216	C	T	C	Sox3.mouse_HMG_2	16	1	+	7.226013661919649	8.8290067115801	TGACAATGTCAGTGAGC
chr12	43588069	43588070	chr12:43588070:A:G	rs74081931	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr12	43896741	43896742	chr12:43896742:A:G	rs1675789	A	G	A	Sox3.mouse_HMG_2	7	1	-	3.204059997449935	-2.298870283792877	AGTCAACTGTAGTGAGG
chr12	44054045	44054046	chr12:44054046:A:C	rs11182405	A	C	C	Sox3.mouse_HMG_2	6	1	-	5.800539947166599	-1.1075352806264591	CAACAATTTCTTTGATC
chr12	44218332	44218333	chr12:44218333:C:A	rs61228557	C	A	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr12	44369734	44369735	chr12:44369735:A:G	rs17094543	A	G	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr12	44755517	44755518	chr12:44755518:C:A	rs11182640	C	A	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr12	45217818	45217819	chr12:45217819:A:G	rs3759080	A	G	G	Sox3.mouse_HMG_2	2	1	-	8.897006805197675	2.53010949867193	TGTCAATTTTATTGTAA
chr12	45441430	45441431	chr12:45441431:G:A	rs74081834	G	A	g	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr12	45991712	45991713	chr12:45991713:T:C	rs1465846060	T	C	T	Sox3.mouse_HMG_2	12	1	+	1.9470277652102554	-4.103939372720561	TTTCAAAGTCACTGATT
chr12	46134262	46134263	chr12:46134263:A:T	rs1550738	A	T	A	Sox3.mouse_HMG_2	4	1	+	8.115803566575662	1.2077283387826054	GATTAATGACATTGTTT
chr12	46261503	46261504	chr12:46261504:G:A	rs3847985	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr12	46352230	46352231	chr12:46352231:A:C	rs79502328	A	C	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr12	46493096	46493097	chr12:46493097:T:C	rs11834444	T	C	T	Sox3.mouse_HMG_2	7	1	+	2.6340932528625927	-2.868837028380218	TATCGAGTGCATTGATG
chr12	46875477	46875478	chr12:46875478:T:C	rs74082953	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr12	46959639	46959640	chr12:46959640:A:G	rs2253630	A	G	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr12	47022298	47022299	chr12:47022299:T:G	rs77685560	T	G	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr12	47022328	47022329	chr12:47022329:A:G	rs7965639	A	G	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr12	47104397	47104398	chr12:47104398:T:C	rs4768137	T	C	T	Sox3.mouse_HMG_2	9	1	+	3.9194063343849708	3.226753791513011	TAACCATTGTATTGAAA
chr12	47221672	47221673	chr12:47221673:G:A	rs191403711	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr12	47246037	47246038	chr12:47246038:T:C	rs855141	T	C	t	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr12	47424825	47424826	chr12:47424826:C:A	rs7296045	C	A	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr12	47547383	47547384	chr12:47547384:T:C	rs56095677	T	C	N	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr12	47779363	47779364	chr12:47779364:T:C	rs866386555	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr12	47779394	47779395	chr12:47779395:G:A	chr12:47779395:G:A	G	A	G	Sox3.mouse_HMG_2	0	1	-	2.8503062861584163	2.365171271904307	CATCAGTTTCATAGAAT
chr12	47875866	47875867	chr12:47875867:T:A	rs10875693	T	A	A	Sox3.mouse_HMG_2	1	1	-	3.933677598727983	1.2384540396746866	GATCAATGTTAATAACT
chr12	47943845	47943846	chr12:47943846:C:T	rs3923693	C	T	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr12	49098183	49098184	chr12:49098184:G:C	rs11834944	G	C	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr12	49208421	49208422	chr12:49208422:A:G	rs10875934	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr12	49415651	49415652	chr12:49415652:A:G	rs74088737	A	G	a	Sox3.mouse_HMG_2	11	1	-	3.2038611121574943	-3.4805130873028425	GAAGAATTTTATTGGGT
chr12	49708751	49708752	chr12:49708752:C:T	rs11169118	C	T	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr12	49784979	49784980	chr12:49784980:C:G	rs79220547	C	G	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr12	49874763	49874764	chr12:49874764:T:A	rs917374570	T	A	T	Sox3.mouse_HMG_2	14	1	+	1.852416598354784	5.87179812210343	CATAAATGCCAGTGTGA
chr12	50143276	50143277	chr12:50143277:C:G	rs2277355	C	G	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr12	50298009	50298010	chr12:50298010:T:C	rs144109642	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr12	50506322	50506323	chr12:50506323:T:C	rs11614212	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr12	51032053	51032054	chr12:51032054:G:A	rs7488909	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr12	51082179	51082180	chr12:51082180:C:T	rs1112391	C	T	T	Sox3.mouse_HMG_2	0	1	+	3.553843519704343	3.0687085054502345	CATGAATTTCATGGATC
chr12	51730933	51730934	chr12:51730934:C:A	rs393897	C	A	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr12	51806957	51806958	chr12:51806958:C:A	rs60637	C	A	C	Sox3.mouse_HMG_2	13	1	-	8.529855892666966	2.1425958537397563	GCTCAATGGTATTGGGC
chr12	51831188	51831189	chr12:51831189:T:C	rs10876211	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr12	52123907	52123908	chr12:52123908:T:C	rs148606307	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr12	52189819	52189820	chr12:52189820:G:T	rs11170034	G	T	G	Sox3.mouse_HMG_2	3	1	-	1.0339185460323717	-5.866751693226532	GGGCAATGCCCTTGAAG
chr12	52189836	52189837	chr12:52189837:C:T	rs73311405	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr12	52218321	52218322	chr12:52218322:A:G	rs10747634	A	G	G	Sox3.mouse_HMG_2	11	1	-	2.7597712825593854	-3.92460291690095	CATCAATGGTGTTAAAA
chr12	52229244	52229245	chr12:52229245:T:C	rs7299945	T	C	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr12	52258036	52258037	chr12:52258037:G:T	rs1902765	G	T	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr12	52322737	52322738	chr12:52322738:G:A	rs17656443	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr12	52338556	52338557	chr12:52338557:C:G	rs12099831	C	G	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr12	52608912	52608913	chr12:52608913:G:A	rs78076535	G	A	G	Sox3.mouse_HMG_2	1	1	-	2.533727749132483	2.5539457264231284	CCTCAATGGGAGTGGAG
chr12	52708411	52708412	chr12:52708412:C:A	rs678069	C	A	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr12	52889179	52889180	chr12:52889180:A:G	chr12:52889180:A:G	A	G	a	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr12	53116932	53116933	chr12:53116933:A:G	rs114721356	A	G	a	Sox3.mouse_HMG_2	4	1	+	3.7912097967714056	-2.598071637606484	TTTCAACGTTATTAATT
chr12	53327666	53327667	chr12:53327667:A:C	rs112778209	A	C	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr12	54006158	54006159	chr12:54006159:G:A	rs144743403	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr12	54013505	54013506	chr12:54013506:C:T	rs11170785	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr12	54013512	54013513	chr12:54013513:A:G	rs4759317	A	G	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr12	54280547	54280548	chr12:54280548:A:C	rs530476071	A	C	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr12	54744722	54744723	chr12:54744723:C:T	rs7296402	C	T	C	Sox3.mouse_HMG_2	0	1	-	3.700502061938186	2.0040097682355227	GAACAATGTGATTTATG
chr12	54933578	54933579	chr12:54933579:G:C	rs559546193	G	C	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr12	54968371	54968372	chr12:54968372:C:T	rs10876674	C	T	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr12	55038205	55038206	chr12:55038206:C:T	rs2633414	C	T	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr12	55245468	55245469	chr12:55245469:A:G	rs56793916	A	G	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr12	55373283	55373284	chr12:55373284:T:C	rs10876753	T	C	-	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr12	55712147	55712148	chr12:55712148:A:C	rs78694778	A	C	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr12	56628886	56628887	chr12:56628887:G:A	rs548977400	G	A	g	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr12	56644803	56644804	chr12:56644804:T:C	chr12:56644804:T:C	T	C	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr12	56644845	56644846	chr12:56644846:A:G	chr12:56644846:A:G	A	G	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr12	57003248	57003249	chr12:57003249:C:T	rs61752546	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr12	58172367	58172368	chr12:58172368:C:T	rs1502813	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr12	58529441	58529442	chr12:58529442:T:C	chr12:58529442:T:C	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr12	58529462	58529463	chr12:58529463:A:G	rs146051200	A	G	A	Sox3.mouse_HMG_2	5	1	+	8.332764816646769	1.943483382268878	GTTCAATGTTAATGAGT
chr12	58529470	58529471	chr12:58529471:G:C	rs112759887	G	C	G	Sox3.mouse_HMG_2	13	1	+	8.332764816646769	1.9455047777195564	GTTCAATGTTAATGAGT
chr12	58529481	58529482	chr12:58529482:A:G	rs3913103	A	G	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr12	58552625	58552626	chr12:58552626:T:A	rs3847751	T	A	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr12	58557291	58557292	chr12:58557292:G:A	rs80347972	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr12	58602971	58602972	chr12:58602972:A:T	rs7299125	A	T	T	Sox3.mouse_HMG_2	5	1	+	5.844247938293892	-1.0638272894991676	CAGCAAGGGCATTGATT
chr12	59088964	59088965	chr12:59088965:A:T	rs186165719	A	T	A	Sox3.mouse_HMG_2	2	1	-	2.51338169962564	-0.7682750761578969	GGTCATTGTTTGTGATT
chr12	59337095	59337096	chr12:59337096:A:G	rs11836800	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr12	59561027	59561028	chr12:59561028:A:G	rs2646308	A	G	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr12	59675697	59675698	chr12:59675698:T:G	rs79205592	T	G	G	Sox3.mouse_HMG_2	4	1	-	3.816389428232548	-3.0916857995605103	CATGAATTATATTTATT
chr12	59828838	59828839	chr12:59828839:A:G	rs11173174	A	G	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr12	59828861	59828862	chr12:59828862:A:G	rs11173175	A	G	A	Sox3.mouse_HMG_2	10	1	+	7.59051308344358	0.6817583041283589	AATCAAATATATTGATG
chr12	60335940	60335941	chr12:60335941:A:G	rs186208089	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr12	60685010	60685011	chr12:60685011:T:C	rs166659	T	C	C	Sox3.mouse_HMG_2	0	1	+	5.172744480956299	5.657879495210409	TATCTATTTTAGTGAGC
chr12	60775998	60775999	chr12:60775999:G:A	chr12:60775999:G:A	G	A	G	Sox3.mouse_HMG_2	11	1	+	3.5927516619618247	-0.9787324663714602	GGTCAATGTTAGAGTAG
chr12	60799101	60799102	chr12:60799102:G:A	rs12316933	G	A	G	Sox3.mouse_HMG_2	8	1	+	7.934810003271085	6.716019618526589	CATCAATGGCAATGTTT
chr12	61872405	61872406	chr12:61872406:T:A	rs10492352	T	A	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr12	62035691	62035692	chr12:62035692:C:T	rs348684	C	T	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr12	62035701	62035702	chr12:62035702:T:C	rs76074364	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.930040241916415	-1.4592411924614759	CTTCAGTGCTATTGACG
chr12	62840574	62840575	chr12:62840575:G:A	rs12314904	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr12	62861305	62861306	chr12:62861306:G:A	rs752887287	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr12	63076044	63076045	chr12:63076045:C:A	rs1495016	C	A	A	Sox3.mouse_HMG_2	3	1	+	1.6591603274549684	-5.241509911803939	CATCAAGGGAAGTGAAG
chr12	63107545	63107546	chr12:63107546:T:C	rs983452	T	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr12	63349183	63349184	chr12:63349184:G:A	rs1251623	G	A	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr12	63446195	63446196	chr12:63446196:G:T	rs693920	G	T	T	Sox3.mouse_HMG_2	7	1	+	4.592656871339324	3.4667656574940784	AATAAATGTTAATGATA
chr12	63714172	63714173	chr12:63714173:T:A	rs2175709	T	A	A	Sox3.mouse_HMG_2	2	1	+	1.0869753291321729	-2.1946814466513622	CCTCATTCTCAGTGATT
chr12	63882888	63882889	chr12:63882889:C:T	rs80180884	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr12	63925063	63925064	chr12:63925064:A:G	rs73113995	A	G	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr12	63968938	63968939	chr12:63968939:C:T	rs11175219	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr12	64180492	64180493	chr12:64180493:G:A	rs789713	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr12	64404051	64404052	chr12:64404052:G:C	rs12306555	G	C	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr12	64501819	64501820	chr12:64501820:G:A	rs371108229	G	A	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr12	65394641	65394642	chr12:65394642:G:A	rs10784450	G	A	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr12	65546900	65546901	chr12:65546901:T:C	rs4077464	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.281747634238996	-3.1075338001388926	TCTTAATGGTACTGATA
chr12	65631452	65631453	chr12:65631453:C:G	rs12367873	C	G	C	Sox3.mouse_HMG_2	11	1	+	1.3471826963429792	6.651034718389491	GTTCAATGGCTCTGATA
chr12	65642578	65642579	chr12:65642579:T:C	chr12:65642579:T:C	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr12	65872786	65872787	chr12:65872787:A:G	rs7967707	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr12	66108884	66108885	chr12:66108885:A:T	rs7302893	A	T	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr12	66270210	66270211	chr12:66270211:G:T	rs6581670	G	T	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr12	66422358	66422359	chr12:66422359:A:G	rs10748045	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr12	66644359	66644360	chr12:66644360:T:C	rs10878484	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr12	66901875	66901876	chr12:66901876:A:C	rs1504315	A	C	A	Sox3.mouse_HMG_2	15	1	+	4.5777935163395505	3.1013837922924394	CCACAATTGTATTGTAA
chr12	66901891	66901892	chr12:66901892:C:T	rs1504314	C	T	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr12	66935541	66935542	chr12:66935542:G:A	rs12818966	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr12	66991910	66991911	chr12:66991911:T:G	rs61918819	T	G	T	Sox3.mouse_HMG_2	7	1	+	4.8411465843727335	5.967037798217978	CTTCAATTTTAGTAGTT
chr12	67303536	67303537	chr12:67303537:C:T	rs710630	C	T	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr12	67327830	67327831	chr12:67327831:A:G	rs1082702	A	G	G	Sox3.mouse_HMG_2	8	1	-	6.493680369700961	5.239258403545293	GATAAATGTTATTGTAT
chr12	67442809	67442810	chr12:67442810:G:C	rs1161187	G	C	G	Sox3.mouse_HMG_2	6	1	+	4.968550301726957	5.487344095142124	GTTCAAGTTTATTGTTT
chr12	67446805	67446806	chr12:67446806:G:A	rs10878619	G	A	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr12	67446837	67446838	chr12:67446838:C:A	rs10878620	C	A	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr12	67515889	67515890	chr12:67515890:T:C	rs17103930	T	C	T	Sox3.mouse_HMG_2	8	1	+	4.270895775202753	3.016473809047083	CAACACTGTCAGTGAAA
chr12	67535468	67535469	chr12:67535469:A:T	rs11176774	A	T	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr12	67780833	67780834	chr12:67780834:A:G	rs142037021	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr12	67854651	67854652	chr12:67854652:G:A	rs7295446	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr12	68200995	68200996	chr12:68200996:G:T	rs4913419	G	T	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr12	68210182	68210183	chr12:68210183:C:G	rs11570948	C	G	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr12	68351670	68351671	chr12:68351671:T:C	rs12828683	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr12	68582146	68582147	chr12:68582147:T:C	rs146013034	T	C	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr12	68613797	68613798	chr12:68613798:T:C	rs12304345	T	C	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr12	68915162	68915163	chr12:68915163:C:T	rs568522042	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr12	68953572	68953573	chr12:68953573:A:G	rs7969929	A	G	A	Sox3.mouse_HMG_2	9	1	-	1.964192567280122	1.2715400244081623	GGGCAATGTTTGTGAAT
chr12	69068687	69068688	chr12:69068688:T:G	chr12:69068688:T:G	T	G	t	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr12	69103039	69103040	chr12:69103040:G:C	rs10878911	G	C	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr12	69103040	69103041	chr12:69103041:A:T	rs10878912	A	T	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr12	69161776	69161777	chr12:69161777:T:G	rs10431582	T	G	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr12	69323385	69323386	chr12:69323386:T:G	rs10878963	T	G	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr12	69350323	69350324	chr12:69350324:C:T	rs686407	C	T	T	Sox3.mouse_HMG_2	15	1	-	4.647398215973066	5.081135667234407	TTTCATTTGTATTGAGT
chr12	69948399	69948400	chr12:69948400:G:C	rs11177989	G	C	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr12	70181000	70181001	chr12:70181001:T:C	rs1406013	T	C	T	Sox3.mouse_HMG_2	5	1	-	10.451847343917603	4.062565909539714	GATCAATGTTATGGAAA
chr12	70214809	70214810	chr12:70214810:G:A	rs2091130	G	A	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr12	70239180	70239181	chr12:70239181:G:A	rs11178155	G	A	G	Sox3.mouse_HMG_2	0	1	+	1.3551322004401138	-0.34136009326254685	GCTCAAGGCTTTTGATA
chr12	70815760	70815761	chr12:70815761:T:C	rs2458438	T	C	C	Sox3.mouse_HMG_2	14	1	-	7.852460900441389	4.534394630669787	AATGAATGTTAGTGAGT
chr12	70815770	70815771	chr12:70815771:T:G	rs2470375	T	G	T	Sox3.mouse_HMG_2	4	1	-	7.852460900441389	0.9443856726483331	AATGAATGTTAGTGAGT
chr12	70849627	70849628	chr12:70849628:T:A	rs150770764	T	A	T	Sox3.mouse_HMG_2	7	1	+	3.6582676259199767	-1.8446626553228338	TGACATTTCCATTGATT
chr12	70948489	70948490	chr12:70948490:G:A	rs11178499	G	A	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr12	70948515	70948516	chr12:70948516:G:A	rs34475547	G	A	A	Sox3.mouse_HMG_2	0	1	-	5.1000832800607006	4.614948265806594	CGTTAATGTCATTGTGT
chr12	71219091	71219092	chr12:71219092:T:C	rs1355371	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr12	71375329	71375330	chr12:71375330:C:A	rs7963135	C	A	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr12	71476482	71476483	chr12:71476483:G:A	rs10784919	G	A	G	Sox3.mouse_HMG_2	8	1	+	1.2853564724538644	0.06656608770936816	GGTCAAGGGCAGTGGGA
chr12	71671518	71671519	chr12:71671519:A:T	rs77501953	A	T	A	Sox3.mouse_HMG_2	5	1	+	2.0583757663383007	-4.8496994614547555	CAACAATCTCATTCATG
chr12	71671548	71671549	chr12:71671549:G:A	rs7298382	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr12	71754567	71754568	chr12:71754568:C:G	rs10879331	C	G	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr12	71754570	71754571	chr12:71754571:A:G	rs147965811	A	G	A	Sox3.mouse_HMG_2	15	1	-	4.120833660698197	0.3410342431924005	TCACAATGCTAATGATC
chr12	72744342	72744343	chr12:72744343:T:C	rs1003529880	T	C	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr12	72901833	72901834	chr12:72901834:C:T	rs17799817	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr12	72938017	72938018	chr12:72938018:C:G	rs4505127	C	G	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr12	73025331	73025332	chr12:73025332:G:A	rs995163	G	A	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr12	73414891	73414892	chr12:73414892:C:A	rs1851042	C	A	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr12	73815305	73815306	chr12:73815306:C:T	rs76443784	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr12	74424870	74424871	chr12:74424871:T:A	rs75881685	T	A	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr12	74469133	74469134	chr12:74469134:T:C	rs56162084	T	C	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr12	74514838	74514839	chr12:74514839:A:G	rs4882642	A	G	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr12	75457997	75457998	chr12:75457998:T:A	rs7307352	T	A	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr12	75647585	75647586	chr12:75647586:T:G	rs12424198	T	G	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr12	76190407	76190408	chr12:76190408:G:A	rs142746076	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr12	76302458	76302459	chr12:76302459:A:G	rs1473619	A	G	G	Sox3.mouse_HMG_2	5	1	-	2.12511729653754	2.12511729653754	TAGCATTGTCAGTGAAG
chr12	76445362	76445363	chr12:76445363:G:A	rs11835472	G	A	a	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr12	76540232	76540233	chr12:76540233:T:A	rs4761424	T	A	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr12	76589044	76589045	chr12:76589045:A:C	rs4432068	A	C	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr12	76942645	76942646	chr12:76942646:C:T	rs58830541	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr12	77229936	77229937	chr12:77229937:A:C	rs12833896	A	C	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr12	77377714	77377715	chr12:77377715:G:A	rs4017759	G	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr12	77377727	77377728	chr12:77377728:T:C	rs79841552	T	C	T	Sox3.mouse_HMG_2	12	1	+	6.816762749534466	0.76579561160365	TAACAATTGCATTGGAA
chr12	77421889	77421890	chr12:77421890:T:C	rs7296457	T	C	C	Sox3.mouse_HMG_2	1	1	-	10.823184583534431	8.816796641514971	GATCAATTATAGTGACA
chr12	77585069	77585070	chr12:77585070:A:G	rs696447	A	G	A	Sox3.mouse_HMG_2	10	1	+	4.046434091800115	-2.8623206875151066	TGTCTATGCCATTGTTT
chr12	77675930	77675931	chr12:77675931:G:A	rs711137	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr12	77735030	77735031	chr12:77735031:G:A	rs711152	G	A	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr12	77745674	77745675	chr12:77745675:G:T	rs10859303	G	T	G	Sox3.mouse_HMG_2	1	1	+	4.8148163974766085	4.12598078044277	GGTCAATTGTGGTGAAG
chr12	77814958	77814959	chr12:77814959:C:A	rs7302948	C	A	C	Sox3.mouse_HMG_2	11	1	-	2.825842918911612	4.2063650963254355	TGCCAATGTAAGTGATG
chr12	77946837	77946838	chr12:77946838:T:A	rs2619072	T	A	A	Sox3.mouse_HMG_2	10	1	-	5.7601211436268605	-1.1486336356883609	TTTAAATGTCATTGAAA
chr12	77962613	77962614	chr12:77962614:G:C	rs2464130	G	C	c	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr12	78003118	78003119	chr12:78003119:T:G	rs1731716	T	G	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr12	78186138	78186139	chr12:78186139:G:A	rs77053059	G	A	g	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr12	78458227	78458228	chr12:78458228:C:T	rs9308307	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr12	79250406	79250407	chr12:79250407:C:T	rs752439610	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr12	79252524	79252525	chr12:79252525:A:G	rs1245825	A	G	G	Sox3.mouse_HMG_2	5	1	+	2.117008556058597	-4.27227287831929	TGTGAATGGAAGTGATA
chr12	79369613	79369614	chr12:79369614:G:A	rs6539445	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr12	79409888	79409889	chr12:79409889:G:T	rs1526961	G	T	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr12	79738929	79738930	chr12:79738930:C:T	rs2808355	C	T	T	Sox3.mouse_HMG_2	1	1	-	2.8279266559909586	4.834314598010416	AGACAATTGCTTTGATG
chr12	79977982	79977983	chr12:79977983:T:C	rs112442181	T	C	T	Sox3.mouse_HMG_2	15	1	+	9.335225213641529	5.555425796135732	TGTTAATTTTATTGATC
chr12	79977987	79977988	chr12:79977988:C:T	rs78626556	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr12	80236044	80236045	chr12:80236045:A:G	rs1451104	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.643900283621805	-2.745381150756083	ATTGAATGCCAGTGAAT
chr12	80540818	80540819	chr12:80540819:C:T	rs11114499	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr12	80654569	80654570	chr12:80654570:T:G	rs1163023	T	G	-	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr12	80830393	80830394	chr12:80830394:A:G	rs12314666	A	G	G	Sox3.mouse_HMG_2	1	1	-	10.950965471133735	10.930747493843091	ATTCAATGTCATTGGTG
chr12	80913743	80913744	chr12:80913744:A:G	rs7957120	A	G	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr12	81007893	81007894	chr12:81007894:C:A	rs73141475	C	A	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr12	81150756	81150757	chr12:81150757:C:T	rs10492002	C	T	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr12	81510771	81510772	chr12:81510772:C:T	rs79017802	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr12	81626529	81626530	chr12:81626530:T:C	rs10862331	T	C	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr12	81702167	81702168	chr12:81702168:T:A	rs141137649	T	A	T	Sox3.mouse_HMG_2	14	1	-	5.96973432963174	1.9503528058830948	CCACAGTGTCATTGATG
chr12	81910632	81910633	chr12:81910633:C:T	rs3943787	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr12	82797337	82797338	chr12:82797338:C:T	rs4565970	C	T	C	Sox3.mouse_HMG_2	14	1	-	3.115624633035141	6.433690902806743	TAACAATTGTCTTGGTG
chr12	82972744	82972745	chr12:82972745:G:A	rs142706697	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr12	83004013	83004014	chr12:83004014:C:T	rs1796205	C	T	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr12	83908804	83908805	chr12:83908805:T:C	rs10779060	T	C	T	Sox3.mouse_HMG_2	15	1	+	3.204460425141953	-0.5753389923638429	CCTCAATTTTAAAGATG
chr12	84224303	84224304	chr12:84224304:C:T	rs141249496	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr12	84357899	84357900	chr12:84357900:T:G	rs9669258	T	G	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr12	84358393	84358394	chr12:84358394:T:G	rs7301380	T	G	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr12	84411166	84411167	chr12:84411167:G:T	rs11116366	G	T	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr12	84502997	84502998	chr12:84502998:C:T	rs12812617	C	T	C	Sox3.mouse_HMG_2	13	1	-	4.960544595595714	-1.0910939085905982	GAACAAGGCTATTGAGA
chr12	84642398	84642399	chr12:84642399:C:T	rs1459618	C	T	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr12	85310860	85310861	chr12:85310861:C:T	rs7954427	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr12	86081142	86081143	chr12:86081143:T:C	rs1502799	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr12	86097362	86097363	chr12:86097363:A:C	rs75526457	A	C	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr12	86230377	86230378	chr12:86230378:C:G	rs12305255	C	G	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr12	86230388	86230389	chr12:86230389:A:G	rs61949039	A	G	A	Sox3.mouse_HMG_2	12	1	-	6.591781818092946	0.5408146801621289	GTTCACTTATATTGATG
chr12	86945963	86945964	chr12:86945964:G:A	rs73192720	G	A	G	Sox3.mouse_HMG_2	3	1	-	3.6422547362923816	-1.2146011389298417	AATCAATTTCAATGCTA
chr12	87054249	87054250	chr12:87054250:C:T	rs73181438	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr12	87801895	87801896	chr12:87801896:T:C	rs1461285	T	C	.	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr12	88392036	88392037	chr12:88392037:A:G	rs529091080	A	G	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr12	88625105	88625106	chr12:88625106:C:G	rs1703078	C	G	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr12	88625153	88625154	chr12:88625154:A:G	rs147838291	A	G	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr12	88947585	88947586	chr12:88947586:G:T	rs996286	G	T	G	Sox3.mouse_HMG_2	7	1	+	4.062235211993192	2.936343998147947	ATTCAAGGTTATTGACA
chr12	89134167	89134168	chr12:89134168:C:T	rs71454146	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr12	89227051	89227052	chr12:89227052:G:C	rs2407886	G	C	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr12	89234531	89234532	chr12:89234532:C:T	rs11105214	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr12	89281598	89281599	chr12:89281599:G:A	rs2638470	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr12	89751173	89751174	chr12:89751174:A:G	rs11105400	A	G	A	Sox3.mouse_HMG_2	6	1	-	13.159453089975361	6.770171655597471	CTTCAATGCTATTGAAT
chr12	89753486	89753487	chr12:89753487:C:A	rs882968	C	A	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr12	89762796	89762797	chr12:89762797:A:T	rs7961386	A	T	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr12	89775630	89775631	chr12:89775631:T:C	rs10858928	T	C	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr12	89775647	89775648	chr12:89775648:G:T	rs142416476	G	T	G	Sox3.mouse_HMG_2	3	1	-	7.93563389120473	1.0349636519458225	CCTCAATTTTATTGCTC
chr12	89794078	89794079	chr12:89794079:G:A	rs4842502	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr12	89796626	89796627	chr12:89796627:G:A	rs11105411	G	A	G	Sox3.mouse_HMG_2	8	1	-	2.26736126191619	3.5217832280718597	AAGCTATGCCAGTGATG
chr12	89950917	89950918	chr12:89950918:A:G	rs7294671	A	G	A	Sox3.mouse_HMG_2	5	1	+	5.100252862348249	-1.2890285720296415	TAACAATGGTAATGACT
chr12	90243204	90243205	chr12:90243205:A:C	rs17783448	A	C	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr12	90243219	90243220	chr12:90243220:G:A	rs11615556	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr12	90243221	90243222	chr12:90243222:C:T	rs10506982	C	T	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr12	91039950	91039951	chr12:91039951:A:T	rs12829632	A	T	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr12	91140652	91140653	chr12:91140653:G:A	rs11838325	G	A	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr12	91142636	91142637	chr12:91142637:A:T	rs12313057	A	T	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr12	91180112	91180113	chr12:91180113:A:G	rs12317815	A	G	A	Sox3.mouse_HMG_2	16	1	+	3.8205919967774022	4.032166423262653	TTTAAATTGCATTGAAA
chr12	91524008	91524009	chr12:91524009:T:C	rs769869753	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr12	92064626	92064627	chr12:92064627:C:T	rs67251416	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr12	92064634	92064635	chr12:92064635:T:A	rs995163186	T	A	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr12	92404162	92404163	chr12:92404163:T:C	rs972255866	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr12	92592759	92592760	chr12:92592760:A:G	rs55654693	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.010069124197983	-3.379212310179906	CACCAATTCCATTCATA
chr12	92655912	92655913	chr12:92655913:T:C	rs10859354	T	C	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr12	92675979	92675980	chr12:92675980:G:T	rs17020581	G	T	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr12	92736408	92736409	chr12:92736409:T:C	rs1036995532	T	C	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr12	92820960	92820961	chr12:92820961:T:C	rs11106710	T	C	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr12	92898970	92898971	chr12:92898971:C:T	rs2251254	C	T	-	Sox3.mouse_HMG_2	14	1	-	3.1316295301803527	6.449695799951954	AAACAATGTTTGTGGTT
chr12	93016066	93016067	chr12:93016067:G:A	rs10859402	G	A	G	Sox3.mouse_HMG_2	3	1	+	3.744537349304028	2.894386419934417	CACGAATGGCAGTGATG
chr12	93023897	93023898	chr12:93023898:T:C	rs141969981	T	C	T	Sox3.mouse_HMG_2	16	1	+	5.508051757586898	3.9050587079264476	GTTCAATGACATTAAGT
chr12	93229513	93229514	chr12:93229514:G:A	rs10735313	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr12	93244038	93244039	chr12:93244039:T:C	rs143448081	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr12	93279759	93279760	chr12:93279760:G:C	rs6538404	G	C	G	Sox3.mouse_HMG_2	3	1	-	5.676826227302342	-0.37369308258695616	GAACAATGGTATTAGTA
chr12	93323269	93323270	chr12:93323270:G:A	rs11611045	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr12	93525505	93525506	chr12:93525506:G:A	rs10859504	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr12	93536965	93536966	chr12:93536966:T:C	rs151193140	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr12	93593129	93593130	chr12:93593130:G:A	rs3887022	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr12	93700204	93700205	chr12:93700205:C:T	rs1003537579	C	T	C	Sox3.mouse_HMG_2	0	1	+	6.307477627331233	5.822342613077126	CGTCAATGTCATGGTTT
chr12	93858498	93858499	chr12:93858499:C:A	rs114445791	C	A	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr12	94012857	94012858	chr12:94012858:C:T	rs17295361	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr12	94142170	94142171	chr12:94142171:A:G	rs10859677	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.014315081236331	-2.6700591182240037	GAGAAATTCCATTGATA
chr12	94291261	94291262	chr12:94291262:G:A	rs4761602	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr12	94489128	94489129	chr12:94489129:C:T	rs76785029	C	T	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr12	94685339	94685340	chr12:94685340:G:A	rs1211199739	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr12	94685340	94685341	chr12:94685341:C:A	rs1287489106	C	A	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr12	94685356	94685357	chr12:94685357:T:A	rs73377770	T	A	T	Sox3.mouse_HMG_2	4	1	-	5.538303739647026	-1.3697714881460314	CAACAATTGTGGTGATG
chr12	95164396	95164397	chr12:95164397:G:T	rs6419372	G	T	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr12	95197809	95197810	chr12:95197810:T:C	rs7956997	T	C	t	Sox3.mouse_HMG_2	1	1	-	3.7840674752950205	1.7776795332755628	CATTAATGGCATGGAAA
chr12	95208792	95208793	chr12:95208793:A:G	rs11107934	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr12	95410915	95410916	chr12:95410916:A:G	rs12814561	A	G	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr12	95442969	95442970	chr12:95442970:G:T	rs2596752	G	T	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr12	95443460	95443461	chr12:95443461:G:T	rs2596749	G	T	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr12	95446227	95446228	chr12:95446228:A:G	rs11833598	A	G	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr12	95446237	95446238	chr12:95446238:C:T	rs11838312	C	T	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr12	95487178	95487179	chr12:95487179:C:T	rs11611387	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr12	95877827	95877828	chr12:95877828:C:T	rs879845	C	T	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr12	96046834	96046835	chr12:96046835:A:C	rs2660848	A	C	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr12	96054321	96054322	chr12:96054322:A:G	rs2540473	A	G	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr12	96392663	96392664	chr12:96392664:T:C	rs151081345	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.342558823929504	-2.0467226104483855	TCCCAATTTCAGTGAAT
chr12	96932165	96932166	chr12:96932166:G:A	rs11836610	G	A	G	Sox3.mouse_HMG_2	8	1	-	2.597550113131594	3.851972079287264	CAGCAATGCTATTTTTT
chr12	96955296	96955297	chr12:96955297:T:A	rs10860109	T	A	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr12	97063759	97063760	chr12:97063760:A:T	rs57280713	A	T	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr12	97097682	97097683	chr12:97097683:C:T	rs718524	C	T	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr12	97173736	97173737	chr12:97173737:A:G	rs12367258	A	G	A	Sox3.mouse_HMG_2	10	1	+	4.096967570400124	-2.8117872089150975	AATTAATTCTATTGTAG
chr12	97182737	97182738	chr12:97182738:A:G	rs759476	A	G	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr12	97461848	97461849	chr12:97461849:C:T	rs12422835	C	T	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr12	97942207	97942208	chr12:97942208:G:A	rs11109282	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr12	98110060	98110061	chr12:98110061:T:C	rs74487163	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr12	98194786	98194787	chr12:98194787:A:G	rs17456212	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr12	98406278	98406279	chr12:98406279:G:A	rs11835579	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr12	98509639	98509640	chr12:98509640:C:T	rs4762493	C	T	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr12	99121901	99121902	chr12:99121902:T:C	rs148210656	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr12	99522310	99522311	chr12:99522311:A:T	rs10860455	A	T	t	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr12	99532232	99532233	chr12:99532233:T:G	rs12321286	T	G	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr12	99752978	99752979	chr12:99752979:T:C	rs10860508	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr12	99960788	99960789	chr12:99960789:C:T	rs10507114	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr12	100863251	100863252	chr12:100863252:A:G	rs932102	A	G	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr12	101041266	101041267	chr12:101041267:C:T	rs10507128	C	T	C	Sox3.mouse_HMG_2	14	1	-	4.3599069409506805	7.677973210722282	CATCAATGCCCTTGGAA
chr12	101044558	101044559	chr12:101044559:C:T	rs75576383	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr12	101116592	101116593	chr12:101116593:T:G	rs349661	T	G	G	Sox3.mouse_HMG_2	12	1	+	4.794247985277088	-1.5923406873946282	TTACAATTGCAGTGACG
chr12	101299187	101299188	chr12:101299188:A:G	rs6538980	A	G	G	Sox3.mouse_HMG_2	1	1	+	4.502022073872321	2.4956341318528628	GAAAAATGTCATTGAGC
chr12	101502083	101502084	chr12:101502084:C:T	rs181054792	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr12	101744184	101744185	chr12:101744185:G:A	rs112979792	G	A	G	Sox3.mouse_HMG_2	9	1	-	4.346047370873021	5.03869991374498	GCTAAATGTCAGTGGTG
chr12	102636360	102636361	chr12:102636361:T:A	rs833729	T	A	A	Sox3.mouse_HMG_2	5	1	-	4.320559646838592	-2.5875155809544648	CCAAAATGGTAGTGATT
chr12	102677022	102677023	chr12:102677023:T:C	rs116859112	T	C	T	Sox3.mouse_HMG_2	11	1	+	1.7551946792865531	-4.929179520173784	GATCAATGGCATGCGTG
chr12	102949240	102949241	chr12:102949241:C:A	rs568205125	C	A	C	Sox3.mouse_HMG_2	14	1	-	4.112520966401602	3.4112057124245587	AGGCAATGTCATTGGGT
chr12	103667093	103667094	chr12:103667094:C:T	rs3752879	C	T	c	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr12	103809376	103809377	chr12:103809377:T:C	rs141300575	T	C	T	Sox3.mouse_HMG_2	0	1	+	5.4415485057351605	5.926683519989267	TCTCAATGTTATTCTTG
chr12	104137027	104137028	chr12:104137028:C:A	rs7979713	C	A	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr12	104137027	104137028	chr12:104137028:C:T	chr12:104137028:C:T	C	T	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr12	104315780	104315781	chr12:104315781:C:T	rs4964287	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr12	104339747	104339748	chr12:104339748:C:G	rs183087515	C	G	C	Sox3.mouse_HMG_2	7	1	-	1.8968079669326583	-4.732013528155399	GATCACTGGTAGCGAAG
chr12	104345237	104345238	chr12:104345238:C:G	rs7962759	C	G	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr12	104402711	104402712	chr12:104402712:G:T	rs59455817	G	T	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr12	104408426	104408427	chr12:104408427:T:G	rs7961423	T	G	G	Sox3.mouse_HMG_2	0	1	+	2.252480362130348	3.042248893908644	TCTCAGTGCTAATGATG
chr12	104518544	104518545	chr12:104518545:A:G	rs17811302	A	G	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr12	104682778	104682779	chr12:104682779:C:T	rs75889538	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr12	104751393	104751394	chr12:104751394:G:T	rs2468109	G	T	g	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr12	104889114	104889115	chr12:104889115:T:C	rs17036463	T	C	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr12	104998895	104998896	chr12:104998896:A:G	rs151332291	A	G	A	Sox3.mouse_HMG_2	12	1	-	2.2133716592194164	-3.8375954787113993	CAACACTGCCAGTGGTG
chr12	105032969	105032970	chr12:105032970:A:C	rs7308574	A	C	C	Sox3.mouse_HMG_2	2	1	-	1.774987655492844	-3.378887011187048	AATACATGTCAGTGATG
chr12	105330372	105330373	chr12:105330373:C:G	chr12:105330373:C:G	C	G	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr12	105908237	105908238	chr12:105908238:G:C	rs7133626	G	C	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr12	105918954	105918955	chr12:105918955:T:C	rs7960880	T	C	C	Sox3.mouse_HMG_2	8	1	+	5.0913622858474845	3.8369403196918155	CATCCATGTTAGTGCTT
chr12	106022504	106022505	chr12:106022505:G:A	rs17038009	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr12	106268767	106268768	chr12:106268768:T:C	rs1148412	T	C	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr12	106357124	106357125	chr12:106357125:C:T	rs79008615	C	T	C	Sox3.mouse_HMG_2	3	1	+	3.19838846506774	-1.6584674101544825	TCTCAATGTTATGAATA
chr12	106405351	106405352	chr12:106405352:A:C	rs2250262	A	C	A	Sox3.mouse_HMG_2	2	1	-	5.581443726642836	0.42756905996294386	ATTCAATGGTATTAAAA
chr12	106727107	106727108	chr12:106727108:A:G	rs112700488	A	G	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr12	107014358	107014359	chr12:107014359:G:A	rs75063577	G	A	G	Sox3.mouse_HMG_2	1	1	+	2.1184253589819884	4.124813301001445	GGTGAATGCTACTGATC
chr12	107014378	107014379	chr12:107014379:G:C	rs10746073	G	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr12	107059006	107059007	chr12:107059007:C:T	rs11113179	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr12	107448428	107448429	chr12:107448429:G:A	rs10746091	G	A	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr12	107457640	107457641	chr12:107457641:T:C	rs11113336	T	C	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr12	107520801	107520802	chr12:107520802:G:A	rs11113367	G	A	G	Sox3.mouse_HMG_2	16	1	+	3.949788693328203	3.7382142668429528	AAACAATGCCAGTGGCG
chr12	107520810	107520811	chr12:107520811:G:T	rs61938450	G	T	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr12	108304116	108304117	chr12:108304117:T:C	rs4964243	T	C	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr12	108313869	108313870	chr12:108313870:G:A	rs2138271	G	A	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr12	108456085	108456086	chr12:108456086:C:T	rs10861925	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr12	108456087	108456088	chr12:108456088:G:C	rs10861926	G	C	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr12	108562918	108562919	chr12:108562919:C:T	rs186093048	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr12	108629865	108629866	chr12:108629866:T:G	rs542107317	T	G	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr12	108632284	108632285	chr12:108632285:C:T	rs76463594	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr12	109137150	109137151	chr12:109137151:C:T	rs1654884	C	T	C	Sox3.mouse_HMG_2	0	1	-	3.4589541078776644	1.7624618141750013	GCTCAATGTCAATGTAA
chr12	109206551	109206552	chr12:109206552:G:A	rs12818314	G	A	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr12	109306429	109306430	chr12:109306430:C:T	rs4766590	C	T	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr12	109702583	109702584	chr12:109702584:T:C	rs1420746	T	C	T	Sox3.mouse_HMG_2	0	1	-	4.704257671835919	6.40074996553858	AAGCCATGCTATTGATT
chr12	109951659	109951660	chr12:109951660:T:C	rs111835427	T	C	T	Sox3.mouse_HMG_2	8	1	+	3.4978298052300776	2.2434078390744077	CAACATTTTCATTGAAC
chr12	110135107	110135108	chr12:110135108:G:A	rs56076213	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr12	110782003	110782004	chr12:110782004:C:A	rs11834902	C	A	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr12	110852916	110852917	chr12:110852917:A:G	rs78915675	A	G	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr12	110893332	110893333	chr12:110893333:C:T	rs74897448	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr12	110893351	110893352	chr12:110893352:T:A	rs11065751	T	A	T	Sox3.mouse_HMG_2	6	1	+	5.622725072831603	-1.2853501549614543	CTACAATGTCATTGTGG
chr12	110893360	110893361	chr12:110893361:G:A	rs11065752	G	A	A	Sox3.mouse_HMG_2	15	1	+	5.622725072831603	6.056462524092944	CTACAATGTCATTGTGG
chr12	111413460	111413461	chr12:111413461:T:A	rs12297345	T	A	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr12	112025491	112025492	chr12:112025492:A:G	rs4767293	A	G	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr12	112907057	112907058	chr12:112907058:A:C	rs1301618455	A	C	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr12	113252590	113252591	chr12:113252591:T:C	rs73192824	T	C	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr12	113831180	113831181	chr12:113831181:C:T	rs116590798	C	T	C	Sox3.mouse_HMG_2	13	1	-	4.713190350902882	-1.3384481532834296	AAACAATGGTTTTGAAT
chr12	113855508	113855509	chr12:113855509:G:A	rs4767148	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr12	114115975	114115976	chr12:114115976:T:A	rs12297105	T	A	A	Sox3.mouse_HMG_2	14	1	+	2.404969678846146	6.424351202594791	CATCAAGGATAGTGTAG
chr12	114396036	114396037	chr12:114396037:G:T	rs2114327	G	T	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr12	114508430	114508431	chr12:114508431:T:C	rs138862442	T	C	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr12	114675900	114675901	chr12:114675901:C:T	rs113723401	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr12	114691370	114691371	chr12:114691371:T:C	rs12810764	T	C	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr12	114752795	114752796	chr12:114752796:G:A	rs11067280	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr12	114999672	114999673	chr12:114999673:T:C	rs76140711	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr12	115096393	115096394	chr12:115096394:T:C	rs7298045	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr12	115102702	115102703	chr12:115102703:G:C	rs78114186	G	C	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr12	115174895	115174896	chr12:115174896:G:C	rs4767297	G	C	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr12	115813430	115813431	chr12:115813431:C:T	rs697863	C	T	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr12	116130617	116130618	chr12:116130618:T:C	rs4767386	T	C	c	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr12	116960642	116960643	chr12:116960643:T:C	rs4542506	T	C	C	Sox3.mouse_HMG_2	5	1	-	2.735866500424595	-3.6534149339532944	TTCCAATGGTAATGATG
chr12	117036245	117036246	chr12:117036246:A:G	rs7978495	A	G	A	Sox3.mouse_HMG_2	5	1	-	2.4221702483779026	2.4221702483779026	TGTCATTGTCATTGTAA
chr12	117083374	117083375	chr12:117083375:A:G	rs10744890	A	G	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr12	117320102	117320103	chr12:117320103:G:A	rs4766843	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr12	117929003	117929004	chr12:117929004:G:A	rs714325	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr12	118337582	118337583	chr12:118337583:C:T	rs186079717	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr12	118347176	118347177	chr12:118347177:T:A	rs77333296	T	A	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr12	118499899	118499900	chr12:118499900:G:T	rs539248970	G	T	G	Sox3.mouse_HMG_2	1	1	+	4.8956996906806	4.206864073646762	GGTCAATGCCAGGGAGG
chr12	118686156	118686157	chr12:118686157:A:G	rs2730746	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr12	118837901	118837902	chr12:118837902:T:C	rs2698086	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr12	118901523	118901524	chr12:118901524:G:A	rs11069159	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr12	119036281	119036282	chr12:119036282:C:G	rs1525971	C	G	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr12	119044230	119044231	chr12:119044231:A:G	rs11064646	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr12	119044246	119044247	chr12:119044247:T:C	rs10849622	T	C	T	Sox3.mouse_HMG_2	4	1	+	3.5690918278512194	3.5690918278512194	TTTCTATGTCAGTGGTG
chr12	119075572	119075573	chr12:119075573:T:C	rs62635306	T	C	-	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr12	119180085	119180086	chr12:119180086:A:G	rs73412044	A	G	A	Sox3.mouse_HMG_2	8	1	+	8.42783691535329	9.646627300097785	GAACAATGATAGTGTTA
chr12	119379422	119379423	chr12:119379423:T:C	rs10849649	T	C	C	Sox3.mouse_HMG_2	1	1	-	3.06249397906378	1.0561060370443232	AATCAACTTCATGGATG
chr12	119501727	119501728	chr12:119501728:T:C	rs1879397	T	C	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr12	119625019	119625020	chr12:119625020:A:G	rs10744742	A	G	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr12	119692103	119692104	chr12:119692104:A:G	rs146348186	A	G	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr12	119704559	119704560	chr12:119704560:C:A	rs77334811	C	A	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr12	120182346	120182347	chr12:120182347:T:C	rs61063054	T	C	T	Sox3.mouse_HMG_2	12	1	+	3.8228402677852533	-2.228126870145563	AATCAATTATACTGACA
chr12	120231366	120231367	chr12:120231367:A:T	rs73415014	A	T	A	Sox3.mouse_HMG_2	6	1	-	2.69882500987934	-4.209250217913716	ACACTATGGTATTGATC
chr12	120247689	120247690	chr12:120247690:C:T	rs56102477	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr12	120247733	120247734	chr12:120247734:G:A	rs60134107	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr12	120536706	120536707	chr12:120536707:C:T	rs614226	C	T	C	Sox3.mouse_HMG_2	13	1	-	5.4800340822331295	-0.5716044219531824	TATCAATTGCTTTGAAC
chr12	120745366	120745367	chr12:120745367:C:T	rs73227016	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr12	120792230	120792231	chr12:120792231:C:G	rs73229114	C	G	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr12	120892227	120892228	chr12:120892228:T:C	rs11065314	T	C	t	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr12	120905869	120905870	chr12:120905870:T:C	rs1732399	T	C	c	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr12	121244247	121244248	chr12:121244248:T:C	rs2686340	T	C	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr12	122063730	122063731	chr12:122063731:G:A	rs116182070	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr12	122152329	122152330	chr12:122152330:T:C	rs2137200	T	C	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr12	122875758	122875759	chr12:122875759:C:G	rs73406944	C	G	g	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr12	122903374	122903375	chr12:122903375:T:G	rs10847980	T	G	T	Sox3.mouse_HMG_2	8	1	+	1.6267658839275552	0.8131279509233427	CCTCAACGTCAGTGCTA
chr12	123094490	123094491	chr12:123094491:G:A	rs73413223	G	A	G	Sox3.mouse_HMG_2	12	1	+	2.4146154317235586	2.750236966464458	CCACAATGCCATGGAAG
chr12	123254506	123254507	chr12:123254507:G:A	rs767061226	G	A	G	Sox3.mouse_HMG_2	10	1	+	1.2528380291686345	8.161592808483856	GGTAAATGTCGGTGATA
chr12	123267178	123267179	chr12:123267179:A:C	rs2271976	A	C	C	Sox3.mouse_HMG_2	2	1	-	1.4703475131179233	-3.683527153561966	TGTCAATGGGGGTGATG
chr12	123267715	123267716	chr12:123267716:C:T	rs10083067	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr12	123433045	123433046	chr12:123433046:A:G	rs28531860	A	G	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr12	123437082	123437083	chr12:123437083:T:C	rs78392487	T	C	T	Sox3.mouse_HMG_2	16	1	-	4.865522055567438	5.0770964820526885	TCTCCATTTTATTGAGA
chr12	123472201	123472202	chr12:123472202:A:G	rs3087496	A	G	A	Sox3.mouse_HMG_2	8	1	+	3.172501343403994	4.39129172814849	CAGCAATGATAGTGGCA
chr12	123526592	123526593	chr12:123526593:A:T	rs28535724	A	T	A	Sox3.mouse_HMG_2	9	1	-	3.5962408297089583	-2.3877404301753606	GATGAATTGTAGGGATG
chr12	123655049	123655050	chr12:123655050:A:G	rs4930737	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.7890562710520177	-2.600225163325872	AGTCAATTTCATTTTTT
chr12	124091011	124091012	chr12:124091012:T:A	rs825481	T	A	T	Sox3.mouse_HMG_2	10	1	-	4.316677022112214	-2.5920777572030076	AAACAATTTGATTGAGA
chr12	124233430	124233431	chr12:124233431:C:T	rs904566250	C	T	C	Sox3.mouse_HMG_2	7	1	-	2.579361059540064	-4.049460435547993	TGTCAACGTCACTGATA
chr12	124538217	124538218	chr12:124538218:G:T	rs74604062	G	T	G	Sox3.mouse_HMG_2	1	1	+	1.0561468657876587	0.3673112487538201	GGTCAAGGCCAGTGGGG
chr12	124693439	124693440	chr12:124693440:C:T	rs1554769	C	T	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr12	124741224	124741225	chr12:124741225:C:T	rs149657706	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr12	124909968	124909969	chr12:124909969:G:A	rs73417485	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr12	124910008	124910009	chr12:124910009:G:C	rs189186050	G	C	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr12	124911671	124911672	chr12:124911672:G:A	rs200766456	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr12	125056400	125056401	chr12:125056401:A:C	rs7304220	A	C	c	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr12	125085166	125085167	chr12:125085167:T:C	rs10846822	T	C	T	Sox3.mouse_HMG_2	12	1	+	2.665039384694859	-3.385927753235957	TCTCAATTGTGGTGGTT
chr12	125298269	125298270	chr12:125298270:C:T	rs12824974	C	T	c	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr12	125329392	125329393	chr12:125329393:C:G	rs11058141	C	G	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr12	126094119	126094120	chr12:126094120:T:G	rs147508012	T	G	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr12	126139617	126139618	chr12:126139618:T:C	rs7960175	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr12	126467965	126467966	chr12:126467966:T:A	rs11058671	T	A	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr12	126999077	126999078	chr12:126999078:G:T	rs10773345	G	T	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr12	127087152	127087153	chr12:127087153:A:G	rs12312096	A	G	G	Sox3.mouse_HMG_2	2	1	-	4.665340804889724	-1.7015565016360203	GATTAATTGTAATGAAT
chr12	127278003	127278004	chr12:127278004:G:A	rs906735	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr12	127285099	127285100	chr12:127285100:C:T	rs11059061	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr12	127490732	127490733	chr12:127490733:A:T	rs10847381	A	T	T	Sox3.mouse_HMG_2	15	1	+	2.2515209792526854	4.55491067271137	GCTGAATGTTATTGCAG
chr12	127559689	127559690	chr12:127559690:G:A	rs145186596	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr12	127602414	127602415	chr12:127602415:A:G	rs12828811	A	G	A	Sox3.mouse_HMG_2	6	1	-	2.588362316076729	-3.800919118301159	GATTCATTCTAGTGATC
chr12	127606381	127606382	chr12:127606382:T:G	rs7955165	T	G	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr12	127683058	127683059	chr12:127683059:G:A	rs7315902	G	A	g	Sox3.mouse_HMG_2	0	1	+	6.30414286998599	4.607650576283327	GTTCTATGGCATTGAAT
chr12	128339967	128339968	chr12:128339968:T:C	rs1621093	T	C	T	Sox3.mouse_HMG_2	10	1	-	5.353787942947746	-1.5549668363674727	AAACAGTTGCATTGATG
chr12	128491290	128491291	chr12:128491291:T:C	rs7136651	T	C	C	Sox3.mouse_HMG_2	10	1	-	2.7305721545581805	-4.178182624757041	CCTCAACGCTATTGTAT
chr12	128491294	128491295	chr12:128491295:G:A	rs7300144	G	A	G	Sox3.mouse_HMG_2	6	1	-	2.7305721545581805	9.11985358893607	CCTCAACGCTATTGTAT
chr12	128491419	128491420	chr12:128491420:A:G	rs76303487	A	G	A	Sox3.mouse_HMG_2	4	1	+	4.527252457525258	-1.862028976852631	CAGCAATGTCAGTGGGC
chr12	128500032	128500033	chr12:128500033:G:C	rs11608385	G	C	C	Sox3.mouse_HMG_2	16	1	-	5.901769646549635	7.14104100657614	TATGAATGCTAGTGAGC
chr12	128581173	128581174	chr12:128581174:C:A	rs7135555	C	A	A	Sox3.mouse_HMG_2	5	1	-	4.964736027290854	4.445942233875687	AATCAGTGGCAGTGACT
chr12	128763820	128763821	chr12:128763821:G:A	rs2398430	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr12	128763840	128763841	chr12:128763841:T:C	rs2398431	T	C	C	Sox3.mouse_HMG_2	12	1	+	2.8273768907959376	-3.2235902471348785	GGACAATGTTGGTGAGA
chr12	128974342	128974343	chr12:128974343:T:C	rs76571605	T	C	t	Sox3.mouse_HMG_2	10	1	-	2.1910642789314383	-4.717690500383783	GCTCAAAGGCATTGCTG
chr12	129119754	129119755	chr12:129119755:A:G	rs10734967	A	G	G	Sox3.mouse_HMG_2	1	1	+	4.417498526030015	2.411110584010558	CATGAATGGTAGGGATG
chr12	129367152	129367153	chr12:129367153:A:G	rs12319167	A	G	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr12	129393867	129393868	chr12:129393868:C:T	rs117438223	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr12	129660190	129660191	chr12:129660191:A:G	rs10773692	A	G	A	Sox3.mouse_HMG_2	10	1	+	4.299880135916236	-2.6088746433989844	AATTACTGTTAGTGATA
chr12	129710832	129710833	chr12:129710833:G:A	rs61275798	G	A	G	Sox3.mouse_HMG_2	11	1	+	7.382228369290508	2.810744240957223	TCTCAATGTCAGTGTGT
chr12	130006642	130006643	chr12:130006643:G:A	rs115732538	G	A	G	Sox3.mouse_HMG_2	11	1	+	6.888716164054263	2.3172320357209775	CATCAAATGCAGTGATC
chr12	130006657	130006658	chr12:130006658:C:T	rs12307812	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr12	130220097	130220098	chr12:130220098:T:A	rs11614173	T	A	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr12	130658816	130658817	chr12:130658817:G:A	rs7969329	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr12	130668200	130668201	chr12:130668201:T:A	rs60876022	T	A	T	Sox3.mouse_HMG_2	7	1	+	6.985650031700787	1.482719750457975	TCACAATTGCATTGAGA
chr12	130748094	130748095	chr12:130748095:T:C	rs12369423	T	C	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr12	130748098	130748099	chr12:130748099:T:C	rs78504677	T	C	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr12	131078387	131078388	chr12:131078388:T:C	rs10773843	T	C	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr12	131130053	131130054	chr12:131130054:C:T	rs9669002	C	T	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr12	131239610	131239611	chr12:131239611:A:C	rs11061404	A	C	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr12	131521379	131521380	chr12:131521380:C:T	rs10773916	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr12	131583730	131583731	chr12:131583731:A:G	rs11246874	A	G	A	Sox3.mouse_HMG_2	12	1	-	7.450141243429319	1.3991741054985023	TTACAATTTCATTGGTG
chr12	131963397	131963398	chr12:131963398:C:T	rs58728522	C	T	T	Sox3.mouse_HMG_2	13	1	-	5.171559819463213	-0.8800786847230986	CATCAATTCCTGTGAAA
chr12	132162765	132162766	chr12:132162766:T:G	rs906603903	T	G	-	Sox3.mouse_HMG_2	3	1	+	3.7673542606194332	2.5736908259523585	GTTTATTTTTATTGATG
chr12	132300935	132300936	chr12:132300936:T:C	rs28569099	T	C	T	Sox3.mouse_HMG_2	10	1	-	1.6886010320070832	-5.220153747308138	CCACCATGGCATTGAGA
chr12	132773033	132773034	chr12:132773034:C:G	rs3741483	C	G	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr12	132813053	132813054	chr12:132813054:T:C	rs75853986	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.2087869247193566	-3.1804945096585326	CTACAATGTTTTTGGTT
chr12	132956745	132956746	chr12:132956746:A:C	chr12:132956746:A:C	A	C	A	Sox3.mouse_HMG_2	3	1	+	4.834863827607169	11.735534066866077	GGTAAATGTTAGTGTTA
chr12	133236885	133236886	chr12:133236886:G:C	rs148437181	G	C	.	Sox3.mouse_HMG_2	13	1	+	4.462783014031882	-1.9244770248953291	TTTCAAAGGTAGTGAAG
chr13	18250720	18250721	chr13:18250721:T:C	rs1335346869	T	C	.	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr13	19240620	19240621	chr13:19240621:A:G	rs7322424	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr13	20512459	20512460	chr13:20512460:G:A	rs7139733	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr13	20822827	20822828	chr13:20822828:T:A	rs2585895	T	A	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr13	20835538	20835539	chr13:20835539:C:T	rs7323504	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr13	20843954	20843955	chr13:20843955:T:G	rs716480	T	G	T	Sox3.mouse_HMG_2	1	1	-	4.016522323291308	1.3010807869473666	GAACAAATGCATTGAAA
chr13	21174970	21174971	chr13:21174971:A:G	rs9580014	A	G	.	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr13	21293490	21293491	chr13:21293491:C:G	rs3814799	C	G	.	Sox3.mouse_HMG_2	8	1	+	5.14168930842937	5.582473341580828	TAAGAATTCCAGTGATT
chr13	22078390	22078391	chr13:22078391:A:G	rs77030195	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.5423788946910837	-2.8469025396868046	GATAAATGGCAGTTATT
chr13	22790080	22790081	chr13:22790081:G:A	rs2114224	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr13	23182894	23182895	chr13:23182895:A:G	rs544497	A	G	A	Sox3.mouse_HMG_2	15	1	-	4.915987001195863	1.136187583690067	TGTCAACTGCAGTGATC
chr13	23321458	23321459	chr13:23321459:T:C	rs521600	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr13	23490401	23490402	chr13:23490402:G:A	rs79598955	G	A	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr13	23516317	23516318	chr13:23516318:C:T	rs7334346	C	T	C	Sox3.mouse_HMG_2	3	1	-	4.76368195067246	3.9135310213028505	AATGAATGCTAATGATT
chr13	23630522	23630523	chr13:23630523:A:G	rs79365557	A	G	A	Sox3.mouse_HMG_2	12	1	-	2.8751314608013008	-3.175835677129515	CATTAATGCCATTAGTG
chr13	23656716	23656717	chr13:23656717:C:G	rs188730339	C	G	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr13	23750407	23750408	chr13:23750408:G:A	rs78518128	G	A	g	Sox3.mouse_HMG_2	9	1	-	6.441551772126548	7.134204314998508	TGTCAAGGTCATTGAAA
chr13	24068789	24068790	chr13:24068790:T:A	rs9551049	T	A	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr13	24120347	24120348	chr13:24120348:A:G	rs1325664	A	G	A	Sox3.mouse_HMG_2	9	1	-	3.2495754799963175	2.5569229371243583	TGTCAAAGTTAGTGACC
chr13	24122368	24122369	chr13:24122369:C:T	rs9551064	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr13	24186768	24186769	chr13:24186769:G:A	rs2760359	G	A	A	Sox3.mouse_HMG_2	7	1	+	5.386279297971944	-1.2425421971161137	CAACAACGCTATTGAGG
chr13	24459061	24459062	chr13:24459062:T:A	rs1130941	T	A	.	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr13	24459088	24459089	chr13:24459089:A:G	rs1050107	A	G	.	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr13	24651698	24651699	chr13:24651699:T:C	rs9553395	T	C	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr13	24723465	24723466	chr13:24723466:G:A	rs2121255	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr13	25181393	25181394	chr13:25181394:A:T	rs7987107	A	T	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr13	25977878	25977879	chr13:25977879:A:G	rs9553691	A	G	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr13	26469759	26469760	chr13:26469760:T:C	rs4427654	T	C	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr13	26910445	26910446	chr13:26910446:C:G	rs9319325	C	G	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr13	26977565	26977566	chr13:26977566:A:T	rs1410437	A	T	T	Sox3.mouse_HMG_2	16	1	+	3.7438065989166756	4.319102715035871	GAACAATGCCAGTAAGA
chr13	27522967	27522968	chr13:27522968:C:T	rs2181777	C	T	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr13	27523003	27523004	chr13:27523004:G:T	rs2181778	G	T	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr13	27803608	27803609	chr13:27803609:G:A	rs6491230	G	A	a	Sox3.mouse_HMG_2	7	1	+	3.4172347384643045	-3.2115867566237486	GAGCTATGCTAGTGATC
chr13	28032131	28032132	chr13:28032132:T:G	rs9512989	T	G	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr13	28455612	28455613	chr13:28455613:G:T	rs77283462	G	T	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr13	28534349	28534350	chr13:28534350:A:G	rs9551485	A	G	a	Sox3.mouse_HMG_2	11	1	-	8.200177692930122	1.5158034934697864	TATGAATTGTATTGAGT
chr13	28559718	28559719	chr13:28559719:T:C	rs56999442	T	C	C	Sox3.mouse_HMG_2	10	1	-	4.71943928184803	-2.1893154974671893	GATGGATGGTAGTGATG
chr13	28564118	28564119	chr13:28564119:T:C	rs7320190	T	C	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr13	28607573	28607574	chr13:28607574:T:C	rs7999898	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr13	28626588	28626589	chr13:28626589:T:C	rs1573522	T	C	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr13	28742400	28742401	chr13:28742401:G:A	rs12867487	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr13	29583826	29583827	chr13:29583827:C:A	rs75580250	C	A	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr13	29730427	29730428	chr13:29730428:C:T	rs2388242	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr13	29730451	29730452	chr13:29730452:G:A	rs12869874	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr13	29852626	29852627	chr13:29852627:T:G	rs80171055	T	G	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr13	29862094	29862095	chr13:29862095:T:C	rs141338098	T	C	T	Sox3.mouse_HMG_2	5	1	-	8.043318708226016	1.6540372738481248	CCACAATGCTAGTGAGT
chr13	29925871	29925872	chr13:29925872:T:G	rs9508593	T	G	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr13	30104450	30104451	chr13:30104451:T:A	rs9551836	T	A	T	Sox3.mouse_HMG_2	14	1	-	4.830204572867923	0.8108230491192782	CAGCAATTCTACTGATG
chr13	30293990	30293991	chr13:30293991:T:C	rs9506282	T	C	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr13	30702160	30702161	chr13:30702161:G:C	rs9506345	G	C	G	Sox3.mouse_HMG_2	3	1	-	3.9581152336599112	-2.0924040762293847	GCTCAATCCTAGTGACT
chr13	30728120	30728121	chr13:30728121:T:C	rs4238135	T	C	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr13	31050606	31050607	chr13:31050607:A:G	rs17537328	A	G	A	Sox3.mouse_HMG_2	9	1	-	2.662840702803541	1.9701881599315811	CCACAATGGTATTGCAC
chr13	31090966	31090967	chr13:31090967:T:C	rs7990345	T	C	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr13	31122352	31122353	chr13:31122353:C:T	rs9537875	C	T	C	Sox3.mouse_HMG_2	16	1	-	2.459001656693859	2.2474272302086087	CCACAATGTTGGTGAAG
chr13	31122364	31122365	chr13:31122365:T:C	rs9315112	T	C	C	Sox3.mouse_HMG_2	4	1	-	2.459001656693859	-3.9302797776840306	CCACAATGTTGGTGAAG
chr13	31122373	31122374	chr13:31122374:C:T	rs117455105	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr13	32899986	32899987	chr13:32899987:T:C	rs9596502	T	C	C	Sox3.mouse_HMG_2	4	1	-	4.446301103507521	-1.9429803308703697	TCTTAATGTTCTTGATT
chr13	33006716	33006717	chr13:33006717:A:G	rs371126	A	G	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr13	33107029	33107030	chr13:33107030:C:A	rs554588	C	A	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr13	33124584	33124585	chr13:33124585:A:G	rs538224	A	G	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr13	33166079	33166080	chr13:33166080:T:C	rs17078655	T	C	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr13	33166080	33166081	chr13:33166081:G:A	rs76861306	G	A	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr13	33180594	33180595	chr13:33180595:G:A	rs748953611	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr13	33180615	33180616	chr13:33180616:C:G	rs1337834161	C	G	C	Sox3.mouse_HMG_2	0	1	-	2.8588371733405733	2.5542036558163854	GATCAATGACCTTGGAC
chr13	33252637	33252638	chr13:33252638:A:G	rs17597518	A	G	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr13	33258472	33258473	chr13:33258473:G:A	rs7326425	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr13	33281685	33281686	chr13:33281686:C:T	rs74556393	C	T	C	Sox3.mouse_HMG_2	16	1	-	3.037985334789215	2.8264109083039646	GTACAATGTCTTTGAGG
chr13	33281697	33281698	chr13:33281698:T:C	rs78398649	T	C	T	Sox3.mouse_HMG_2	4	1	-	3.037985334789215	-3.3512960995886747	GTACAATGTCTTTGAGG
chr13	33283542	33283543	chr13:33283543:A:G	rs4445771	A	G	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr13	33472609	33472610	chr13:33472610:G:C	rs1536239	G	C	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr13	33667294	33667295	chr13:33667295:G:A	rs59288501	G	A	G	Sox3.mouse_HMG_2	12	1	+	0.8445010717823146	1.180122606523214	CCTCCATGGTAGGGATG
chr13	33737194	33737195	chr13:33737195:C:A	rs9598044	C	A	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr13	34362334	34362335	chr13:34362335:A:G	rs9540615	A	G	A	Sox3.mouse_HMG_2	4	1	+	3.0713683292243346	-3.3179131051535555	CATCAATGCCAGACATA
chr13	34428333	34428334	chr13:34428334:A:T	rs73181242	A	T	A	Sox3.mouse_HMG_2	8	1	-	3.4758019952629504	1.4433736775142416	AAACAAGGTTATTGACA
chr13	34822909	34822910	chr13:34822910:G:A	rs9542402	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr13	35164744	35164745	chr13:35164745:G:A	rs76006897	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr13	35356524	35356525	chr13:35356525:C:T	rs1197849	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr13	35643899	35643900	chr13:35643900:T:C	rs9574293	T	C	T	Sox3.mouse_HMG_2	12	1	+	2.1158627626712145	-3.935104375259601	CAAGAAAGTCATTGATG
chr13	35748347	35748348	chr13:35748348:A:G	rs9545212	A	G	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr13	35979423	35979424	chr13:35979424:A:C	chr13:35979424:A:C	A	C	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr13	36155556	36155557	chr13:36155557:G:C	rs1928018	G	C	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr13	36198243	36198244	chr13:36198244:G:A	rs2149423	G	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr13	36454871	36454872	chr13:36454872:A:C	rs9576061	A	C	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr13	36527183	36527184	chr13:36527184:T:C	rs11841302	T	C	T	Sox3.mouse_HMG_2	14	1	-	3.1140398994463223	-0.2040263703252792	TAAAAATGCCAGTGAAT
chr13	36904368	36904369	chr13:36904369:C:T	rs527929	C	T	T	Sox3.mouse_HMG_2	0	1	-	5.006514675549951	3.3100223818472885	GTGCAATTTTAGTGACA
chr13	37059120	37059121	chr13:37059121:A:C	rs572888885	A	C	a	Sox3.mouse_HMG_2	1	1	+	9.862665914927653	7.1472243785837115	TATCAATTCTACTGATT
chr13	37108567	37108568	chr13:37108568:G:T	rs2323396	G	T	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr13	37395160	37395161	chr13:37395161:C:T	rs4943503	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr13	37416264	37416265	chr13:37416265:A:G	rs114265466	A	G	A	Sox3.mouse_HMG_2	6	1	-	4.218276298323801	-2.1710051360540876	CATTTATTTTATTGAAT
chr13	37448153	37448154	chr13:37448154:A:G	rs146507412	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr13	37602469	37602470	chr13:37602470:T:C	rs17257579	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.0898319102158744	-3.299449524162016	GTTCAATTTTATTTGGG
chr13	37681861	37681862	chr13:37681862:C:A	rs1470065615	C	A	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr13	37786590	37786591	chr13:37786591:C:T	rs7993498	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr13	37919462	37919463	chr13:37919463:A:T	rs13378806	A	T	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr13	38262149	38262150	chr13:38262150:T:C	rs7322960	T	C	t	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr13	38399156	38399157	chr13:38399157:T:C	rs151218375	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr13	38399203	38399204	chr13:38399204:A:G	rs140365958	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr13	38752117	38752118	chr13:38752118:G:A	rs9576611	G	A	A	Sox3.mouse_HMG_2	15	1	-	2.5018091714072286	6.2816085889130235	CATCAATGTCATACACT
chr13	38768890	38768891	chr13:38768891:A:G	rs76196331	A	G	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr13	38814224	38814225	chr13:38814225:G:A	rs11618193	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr13	38943029	38943030	chr13:38943030:T:A	rs4544122	T	A	T	Sox3.mouse_HMG_2	6	1	+	4.9567452957219045	-1.9513299320711532	TAACAATTTTACTGAAA
chr13	39024257	39024258	chr13:39024258:C:G	rs1326404	C	G	G	Sox3.mouse_HMG_2	9	1	+	4.363836909607105	-0.9274918074052536	AAGCAATTTCACTGATT
chr13	39410653	39410654	chr13:39410654:C:T	rs73173499	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr13	39590510	39590511	chr13:39590511:A:T	rs9548835	A	T	A	Sox3.mouse_HMG_2	5	1	+	4.692436155812251	-2.2156390719808097	GATCAATTCTTGTGACA
chr13	39765540	39765541	chr13:39765541:A:G	rs4603426	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.343001072542879	-3.3413731269174556	TGTTAATGTGATTGAGT
chr13	39969355	39969356	chr13:39969356:T:C	rs9549021	T	C	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr13	40183633	40183634	chr13:40183634:A:T	rs9549095	A	T	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr13	40878684	40878685	chr13:40878685:T:C	rs7997536	T	C	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr13	40878722	40878723	chr13:40878723:T:C	rs7997560	T	C	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr13	40880033	40880034	chr13:40880034:A:G	rs12871420	A	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr13	40880066	40880067	chr13:40880067:C:G	rs9594450	C	G	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr13	41216447	41216448	chr13:41216448:A:C	rs74345847	A	C	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr13	41313256	41313257	chr13:41313257:G:C	chr13:41313257:G:C	G	C	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr13	41564028	41564029	chr13:41564029:C:T	rs12867333	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr13	41564072	41564073	chr13:41564073:A:C	rs1887743	A	C	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr13	41652486	41652487	chr13:41652487:A:T	rs9562329	A	T	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr13	41751058	41751059	chr13:41751059:A:G	rs12584644	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr13	41960014	41960015	chr13:41960015:A:G	rs117166704	A	G	A	Sox3.mouse_HMG_2	8	1	-	8.451540324861073	7.1971183587054	TGTCAATGTCAGTGCTG
chr13	42066204	42066205	chr13:42066205:A:G	rs6561033	A	G	A	Sox3.mouse_HMG_2	9	1	-	6.971344311663323	6.278691768791363	TCACAATTGTATTGTTT
chr13	42164974	42164975	chr13:42164975:C:G	chr13:42164975:C:G	C	G	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr13	42319849	42319850	chr13:42319850:C:T	rs9533063	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr13	42524191	42524192	chr13:42524192:A:G	rs4942139	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr13	42524210	42524211	chr13:42524211:A:G	rs4941432	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr13	42559278	42559279	chr13:42559279:T:C	rs66939206	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.8089803560466393	-2.580301078331251	ACTCAATGGGAGTGGTT
chr13	42696380	42696381	chr13:42696381:C:T	rs1169791	C	T	c	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr13	42835209	42835210	chr13:42835210:T:C	rs1011009	T	C	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr13	42877309	42877310	chr13:42877310:T:C	rs80092417	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.0655239943805874	-3.3237574399973013	GATGAATGGTTTTGAAA
chr13	43049293	43049294	chr13:43049294:A:G	rs17064072	A	G	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr13	43343987	43343988	chr13:43343988:G:A	rs1317310	G	A	A	Sox3.mouse_HMG_2	3	1	-	11.977591309679143	7.12073543445692	ACTCAATGCCAGTGATT
chr13	43488502	43488503	chr13:43488503:C:A	rs115017037	C	A	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr13	43546851	43546852	chr13:43546852:T:C	rs9316034	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr13	43788089	43788090	chr13:43788090:T:C	rs77634831	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr13	43796134	43796135	chr13:43796135:G:T	rs7335504	G	T	T	Sox3.mouse_HMG_2	9	1	-	3.8977831419637585	-1.393545575048602	GGTCAGTGACAGTGGTT
chr13	44050602	44050603	chr13:44050603:G:T	rs78612588	G	T	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr13	44136424	44136425	chr13:44136425:A:G	rs9525917	A	G	A	Sox3.mouse_HMG_2	2	1	+	4.960219870964408	3.0880019800680527	TTACAATGTTATTTATC
chr13	44464625	44464626	chr13:44464626:T:G	rs77902003	T	G	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr13	44690505	44690506	chr13:44690506:T:G	rs144795749	T	G	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr13	44768316	44768317	chr13:44768317:C:T	rs1415641	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr13	45464724	45464725	chr13:45464725:T:C	rs945962182	T	C	.	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr13	45577643	45577644	chr13:45577644:C:T	rs3014921	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr13	45660180	45660181	chr13:45660181:C:T	rs73189626	C	T	C	Sox3.mouse_HMG_2	3	1	+	2.616538041589571	-2.2403178336326484	GGCCAATTTCCTTGATT
chr13	45737560	45737561	chr13:45737561:A:G	rs73189698	A	G	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr13	45807758	45807759	chr13:45807759:G:C	rs188644762	G	C	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr13	45807788	45807789	chr13:45807789:G:A	rs719401	G	A	A	Sox3.mouse_HMG_2	3	1	-	3.5268724581122814	-1.3299834171099398	ATGCAATGTCAATGATT
chr13	45807790	45807791	chr13:45807791:A:G	rs76807011	A	G	A	Sox3.mouse_HMG_2	1	1	-	3.5268724581122814	3.506654480821637	ATGCAATGTCAATGATT
chr13	45882791	45882792	chr13:45882792:A:G	rs78074044	A	G	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr13	46281280	46281281	chr13:46281281:A:T	rs11618078	A	T	A	Sox3.mouse_HMG_2	9	1	-	2.6686626191158993	-3.3153186407684188	CGTCAGTGATAATGATG
chr13	46306099	46306100	chr13:46306100:A:G	rs2764585	A	G	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr13	46341212	46341213	chr13:46341213:G:A	rs375404403	G	A	G	Sox3.mouse_HMG_2	14	1	-	2.6142526999072895	4.62739979374729	CATCAGTTGCAGTGCTG
chr13	46560535	46560536	chr13:46560536:G:A	rs912433	G	A	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr13	46567425	46567426	chr13:46567426:G:A	rs34271323	G	A	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr13	46648441	46648442	chr13:46648442:T:C	rs77727141	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.7662162314135443	-2.623065202964347	GGTCAATGGCATGAATT
chr13	46651304	46651305	chr13:46651305:T:A	rs1773128	T	A	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr13	47136629	47136630	chr13:47136630:T:C	rs2802411	T	C	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr13	47433682	47433683	chr13:47433683:C:T	rs9595687	C	T	c	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr13	47893731	47893732	chr13:47893732:A:C	rs9534856	A	C	A	Sox3.mouse_HMG_2	6	1	-	4.465288714391747	-2.4427865134013103	GATCAATGTTTGTTATA
chr13	48210351	48210352	chr13:48210352:T:C	rs187519156	T	C	T	Sox3.mouse_HMG_2	7	1	-	2.1599147638136027	8.788736258901661	GCACAATAGTAGTGAGT
chr13	48210356	48210357	chr13:48210357:T:A	rs192088366	T	A	T	Sox3.mouse_HMG_2	2	1	-	2.1599147638136027	5.441571539597137	GCACAATAGTAGTGAGT
chr13	48629698	48629699	chr13:48629699:G:A	rs59927903	G	A	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr13	48730083	48730084	chr13:48730084:A:G	rs1323538	A	G	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr13	48730105	48730106	chr13:48730106:G:T	rs1323537	G	T	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr13	48860498	48860499	chr13:48860499:C:T	rs2217142	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr13	49078284	49078285	chr13:49078285:G:A	rs1359066	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr13	49321162	49321163	chr13:49321163:C:T	rs184640300	C	T	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr13	49840397	49840398	chr13:49840398:G:A	rs12585879	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr13	49840415	49840416	chr13:49840416:A:C	rs77579290	A	C	A	Sox3.mouse_HMG_2	5	1	+	3.598261071088699	-3.309814156704357	CTGCAATGTCCTTGATG
chr13	49859450	49859451	chr13:49859451:G:A	rs76225850	G	A	G	Sox3.mouse_HMG_2	16	1	+	2.1958777136750656	1.984303287189815	CCCCAATTTCAATGATG
chr13	49877571	49877572	chr13:49877572:G:A	rs7332445	G	A	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr13	50156896	50156897	chr13:50156897:A:G	rs889800377	A	G	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr13	50167950	50167951	chr13:50167951:G:A	rs1798972	G	A	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr13	50306347	50306348	chr13:50306348:G:A	rs71436222	G	A	G	Sox3.mouse_HMG_2	3	1	+	5.712379967645811	4.862229038276201	GTTGAATTCTATTGAAA
chr13	50357428	50357429	chr13:50357429:G:T	rs12871645	G	T	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr13	50484825	50484826	chr13:50484826:A:C	rs79442997	A	C	A	Sox3.mouse_HMG_2	12	1	-	6.031095359469539	-0.3554933132021754	CAAAAATTTCAGTGATT
chr13	50613751	50613752	chr13:50613752:A:G	rs139248268	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr13	50613786	50613787	chr13:50613787:C:T	rs771740458	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr13	50706553	50706554	chr13:50706554:G:A	rs797503	G	A	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr13	50708547	50708548	chr13:50708548:G:A	rs797510	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr13	50745817	50745818	chr13:50745818:T:C	rs139168771	T	C	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr13	50830208	50830209	chr13:50830209:T:C	rs17528331	T	C	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr13	50891646	50891647	chr13:50891647:C:G	rs9568487	C	G	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr13	50894243	50894244	chr13:50894244:G:A	rs11842683	G	A	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr13	51117002	51117003	chr13:51117003:T:C	rs59612004	T	C	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr13	51159555	51159556	chr13:51159556:C:G	rs9568536	C	G	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr13	51322182	51322183	chr13:51322183:C:T	rs9535644	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr13	51734924	51734925	chr13:51734925:T:C	rs9788353	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.855499556933399	-2.53378187744449	CTTCAATGCTTGTGGTT
chr13	51734939	51734940	chr13:51734940:C:T	rs9535743	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr13	53373329	53373330	chr13:53373330:G:A	rs2197304	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr13	55200443	55200444	chr13:55200444:A:G	rs7995821	A	G	A	Sox3.mouse_HMG_2	11	1	-	5.1357095280929	-1.5486646713674357	GATCATTGCTATTGGGG
chr13	55425071	55425072	chr13:55425072:A:G	rs2937338	A	G	G	Sox3.mouse_HMG_2	2	1	+	3.8475073335528465	1.975289442656493	ACACATTGTCATTGATA
chr13	56736908	56736909	chr13:56736909:G:T	rs151319990	G	T	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr13	56860459	56860460	chr13:56860460:G:C	rs7333137	G	C	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr13	57450524	57450525	chr13:57450525:G:A	rs2167070	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr13	57612864	57612865	chr13:57612865:T:G	rs148462702	T	G	T	Sox3.mouse_HMG_2	4	1	-	4.172574024550656	-2.735501203242398	TGTTAATTGTAATGATT
chr13	57813798	57813799	chr13:57813799:A:G	rs78936035	A	G	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr13	57947876	57947877	chr13:57947877:T:G	rs2118089	T	G	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr13	58567031	58567032	chr13:58567032:G:A	rs78852312	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr13	58802271	58802272	chr13:58802272:A:G	rs9538215	A	G	A	Sox3.mouse_HMG_2	4	1	+	4.2439609248578956	-2.1453205095199936	GCACAATGACATTTATG
chr13	59068724	59068725	chr13:59068725:G:C	rs4640069	G	C	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr13	59127697	59127698	chr13:59127698:C:T	rs74084015	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr13	59230227	59230228	chr13:59230228:C:T	rs9634890	C	T	C	Sox3.mouse_HMG_2	13	1	+	2.081666365066453	2.081666365066453	GATCATTGTTATTCAGC
chr13	59394954	59394955	chr13:59394955:A:G	rs9538402	A	G	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr13	59602117	59602118	chr13:59602118:A:G	rs474813	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.354009000056757	-2.0352724343211333	CCTCAATAATATTGGTG
chr13	59691659	59691660	chr13:59691660:G:A	rs75324918	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr13	59971998	59971999	chr13:59971999:A:G	rs2670487	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr13	60147505	60147506	chr13:60147506:C:T	rs1337645	C	T	T	Sox3.mouse_HMG_2	7	1	-	4.292109516457119	-2.3367119786309387	GATCAGTGTCAGTTATA
chr13	60766615	60766616	chr13:60766616:T:C	rs1399141	T	C	C	Sox3.mouse_HMG_2	1	1	-	8.263915688461395	6.257527746441936	CATCAATTATATTCATC
chr13	61096803	61096804	chr13:61096804:A:G	rs75492933	A	G	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr13	61149274	61149275	chr13:61149275:G:A	rs9563888	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr13	61149324	61149325	chr13:61149325:G:A	rs9539048	G	A	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr13	61275391	61275392	chr13:61275392:G:C	rs79930573	G	C	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr13	61675618	61675619	chr13:61675619:C:T	rs9598336	C	T	C	Sox3.mouse_HMG_2	13	1	-	7.110611909471445	1.058973405285134	ATTCAATTTCATTGCTG
chr13	61679571	61679572	chr13:61679572:G:A	rs4886360	G	A	G	Sox3.mouse_HMG_2	4	1	+	7.343859131904992	13.73314056628288	GATCGATGTGATTGATT
chr13	62143780	62143781	chr13:62143781:G:A	rs55703528	G	A	g	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr13	62357881	62357882	chr13:62357882:A:C	rs309091	A	C	c	Sox3.mouse_HMG_2	1	1	+	5.215347682345994	2.499906146002055	TATTAAAGCCATTGATT
chr13	62642605	62642606	chr13:62642606:T:C	rs59557454	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr13	62643890	62643891	chr13:62643891:T:C	rs9528551	T	C	T	Sox3.mouse_HMG_2	7	1	+	2.7345740198644974	-2.768356261378312	GGCCAAATTTATTGATA
chr13	62798774	62798775	chr13:62798775:C:T	rs9570737	C	T	-	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr13	62909841	62909842	chr13:62909842:A:G	rs115154874	A	G	A	Sox3.mouse_HMG_2	3	1	-	9.342845542364676	14.1997014175869	TTTTAATGATATTGATT
chr13	63208001	63208002	chr13:63208002:T:C	rs34396405	T	C	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr13	63846107	63846108	chr13:63846108:T:C	rs145184080	T	C	.	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr13	63848805	63848806	chr13:63848806:G:C	rs536914	G	C	.	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr13	63983533	63983534	chr13:63983534:G:A	rs4512976	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr13	64244887	64244888	chr13:64244888:C:T	rs9317406	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr13	64317064	64317065	chr13:64317065:T:C	rs11148643	T	C	C	Sox3.mouse_HMG_2	8	1	+	5.357150177421206	4.1027282112655366	TTAAAATGTCATTGATT
chr13	64594791	64594792	chr13:64594792:A:G	rs12585691	A	G	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr13	64639368	64639369	chr13:64639369:T:G	rs359397	T	G	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr13	64912516	64912517	chr13:64912517:C:T	rs1121006	C	T	c	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr13	64974567	64974568	chr13:64974568:G:A	rs9317464	G	A	g	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr13	66181447	66181448	chr13:66181448:G:A	rs11620281	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr13	66181491	66181492	chr13:66181492:T:C	rs73499935	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr13	66181503	66181504	chr13:66181504:G:C	rs7335524	G	C	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr13	66464259	66464260	chr13:66464260:C:T	rs1470370	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr13	66530924	66530925	chr13:66530925:C:T	rs17081458	C	T	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr13	66624592	66624593	chr13:66624593:A:G	rs9529106	A	G	A	Sox3.mouse_HMG_2	5	1	+	7.911980571052281	1.5226991366743896	TAACAATTTTATTGCTA
chr13	66673746	66673747	chr13:66673747:T:C	rs9317600	T	C	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr13	66755782	66755783	chr13:66755783:T:G	rs9571646	T	G	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr13	67227399	67227400	chr13:67227400:A:G	rs45527937	A	G	A	Sox3.mouse_HMG_2	6	1	-	5.620772738745955	-0.7685086956319344	CATCAATGTCACCGATG
chr13	67326617	67326618	chr13:67326618:A:C	rs2991408	A	C	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr13	67369983	67369984	chr13:67369984:C:T	rs17082433	C	T	C	Sox3.mouse_HMG_2	8	1	-	6.358740952434807	5.139950567690311	TAGTAATGGTAGTGATG
chr13	68012448	68012449	chr13:68012449:T:C	rs962412844	T	C	T	Sox3.mouse_HMG_2	4	1	-	3.114310787159181	-3.274970647218708	CAGCAATGTGAGTGACT
chr13	68253940	68253941	chr13:68253941:G:A	rs1778812	G	A	G	Sox3.mouse_HMG_2	12	1	-	6.459726416333606	12.510693554264423	GATCAATGCTAACGATT
chr13	68923233	68923234	chr13:68923234:G:A	rs9592579	G	A	g	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr13	69424048	69424049	chr13:69424049:G:T	rs57212794	G	T	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr13	69793997	69793998	chr13:69793998:C:T	rs73210502	C	T	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr13	70042905	70042906	chr13:70042906:G:C	rs79303832	G	C	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr13	70090030	70090031	chr13:70090031:T:A	rs9572362	T	A	T	Sox3.mouse_HMG_2	7	1	-	11.044109833145177	16.54704011438799	TATCAATACTATTGATT
chr13	70424916	70424917	chr13:70424917:A:G	rs9599663	A	G	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr13	70534744	70534745	chr13:70534745:A:G	rs9542369	A	G	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr13	70916767	70916768	chr13:70916768:T:C	rs2325352	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr13	71052462	71052463	chr13:71052463:A:G	rs9572631	A	G	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr13	71210488	71210489	chr13:71210489:A:G	rs9572687	A	G	A	Sox3.mouse_HMG_2	5	1	+	5.022259417557141	-1.3670220168207483	TGTCAATTTCAGTGCAG
chr13	71789889	71789890	chr13:71789890:C:A	rs748676	C	A	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr13	72151574	72151575	chr13:72151575:T:G	rs585032	T	G	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr13	72352376	72352377	chr13:72352377:A:G	rs547638	A	G	a	Sox3.mouse_HMG_2	4	1	+	3.8611425658657783	-2.5281388685121104	CTTCAATGCTGGTGAGA
chr13	72410574	72410575	chr13:72410575:G:A	rs17089337	G	A	G	Sox3.mouse_HMG_2	15	1	-	11.644442279855488	15.424241697361284	CATCAATGATAGTGACA
chr13	72653276	72653277	chr13:72653277:A:T	rs67827423	A	T	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr13	72686915	72686916	chr13:72686916:T:A	rs11838688	T	A	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr13	72920449	72920450	chr13:72920450:A:G	rs9573064	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.80770726355175	-3.5815741708261397	GATCAATGGCACTAAAG
chr13	72920460	72920461	chr13:72920461:G:T	rs7327453	G	T	G	Sox3.mouse_HMG_2	16	1	+	2.80770726355175	3.171428953185696	GATCAATGGCACTAAAG
chr13	72969567	72969568	chr13:72969568:G:A	rs117981701	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr13	73071161	73071162	chr13:73071162:C:T	rs9530145	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr13	73366588	73366589	chr13:73366589:C:G	rs9318170	C	G	G	Sox3.mouse_HMG_2	13	1	-	6.629267232624556	0.2420071936973438	TATCAATGTCACTGGTC
chr13	73481095	73481096	chr13:73481096:C:T	rs1361058	C	T	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr13	73618669	73618670	chr13:73618670:A:G	rs138426676	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr13	73708483	73708484	chr13:73708484:G:T	rs150823534	G	T	G	Sox3.mouse_HMG_2	13	1	+	4.216656801710502	-2.1706032372167106	TGTCAGTGTCATTGTTC
chr13	73803307	73803308	chr13:73803308:C:T	rs879800	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr13	74112708	74112709	chr13:74112709:C:T	rs9565077	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr13	74172044	74172045	chr13:74172045:T:C	rs7990716	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.486627095083591	-3.9026543392942985	GGTCAATGGTATAGTGC
chr13	74289201	74289202	chr13:74289202:C:A	rs9573368	C	A	C	Sox3.mouse_HMG_2	7	1	-	1.5108620367103343	0.38497082286508894	GACCAAAGGTAGTGAGT
chr13	74811168	74811169	chr13:74811169:C:A	rs4307837	C	A	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr13	74907839	74907840	chr13:74907840:G:A	rs1258992620	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr13	75254234	75254235	chr13:75254235:T:A	rs9318328	T	A	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr13	75425550	75425551	chr13:75425551:G:A	rs12876647	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr13	75495543	75495544	chr13:75495544:T:C	rs75697026	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr13	75684933	75684934	chr13:75684934:T:C	rs9530460	T	C	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr13	75903015	75903016	chr13:75903016:G:T	rs976354	G	T	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr13	76034592	76034593	chr13:76034593:G:A	rs7990448	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr13	76117482	76117483	chr13:76117483:C:T	rs1590910	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr13	76517154	76517155	chr13:76517155:C:G	rs17066322	C	G	C	Sox3.mouse_HMG_2	1	1	-	4.84342250156146	4.134368907236977	GGACAATTTCAGGGATT
chr13	76787580	76787581	chr13:76787581:C:T	rs76842352	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr13	76787617	76787618	chr13:76787618:A:G	rs8000613	A	G	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr13	77330025	77330026	chr13:77330026:G:A	rs115736965	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr13	77480075	77480076	chr13:77480076:C:T	rs636223	C	T	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr13	77613710	77613711	chr13:77613711:A:G	rs4595685	A	G	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr13	78146047	78146048	chr13:78146048:T:C	rs1408612	T	C	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr13	78265124	78265125	chr13:78265125:C:G	rs192990391	C	G	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr13	78265125	78265126	chr13:78265126:G:A	rs9601022	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr13	78849152	78849153	chr13:78849153:C:T	rs7986745	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr13	79529093	79529094	chr13:79529094:C:T	rs2783121	C	T	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr13	79851156	79851157	chr13:79851157:G:C	rs7337191	G	C	C	Sox3.mouse_HMG_2	3	1	-	8.565158199454153	2.514638889564858	AAACAATTCCATTGAGG
chr13	80029456	80029457	chr13:80029457:A:C	rs3850071	A	C	A	Sox3.mouse_HMG_2	12	1	-	4.160660367882622	-2.225928304789093	TCACAGTTCTATTGATT
chr13	80049210	80049211	chr13:80049211:A:C	rs7981942	A	C	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr13	80191680	80191681	chr13:80191681:G:C	rs518627	G	C	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr13	80755681	80755682	chr13:80755682:C:T	rs2794249	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr13	80815204	80815205	chr13:80815205:A:G	rs9545559	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.4258627956794636	-2.963418638698426	GGTCAATTTCATAAATG
chr13	81458261	81458262	chr13:81458262:G:T	rs9531178	G	T	T	Sox3.mouse_HMG_2	11	1	+	3.37036454267929	4.7508867200931135	TTTCAATGCTTGTGGTT
chr13	81771146	81771147	chr13:81771147:A:G	rs73246713	A	G	A	Sox3.mouse_HMG_2	10	1	+	6.016799588326624	-0.8919551909885968	ACTCATTTCTATTGATT
chr13	81783888	81783889	chr13:81783889:C:A	rs446371	C	A	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr13	82076569	82076570	chr13:82076570:A:G	rs9531289	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr13	82154974	82154975	chr13:82154975:G:A	rs142450178	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr13	82738581	82738582	chr13:82738582:G:C	rs6563306	G	C	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr13	83200330	83200331	chr13:83200331:T:C	rs2669246	T	C	C	Sox3.mouse_HMG_2	4	1	-	7.00833923815078	0.6190578037728915	GCTCAATGGTAGTGTCT
chr13	83397295	83397296	chr13:83397296:A:C	rs9546370	A	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr13	83515285	83515286	chr13:83515286:A:G	rs996533	A	G	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr13	83839352	83839353	chr13:83839353:T:A	rs77893454	T	A	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr13	84130135	84130136	chr13:84130136:T:C	rs7989783	T	C	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr13	84130150	84130151	chr13:84130151:G:A	rs4378519	G	A	g	Sox3.mouse_HMG_2	11	1	+	3.7001147095325284	-0.8713694188007572	TTTCATTGGCAGTGAGT
chr13	84137216	84137217	chr13:84137217:A:G	rs9546612	A	G	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr13	84400831	84400832	chr13:84400832:A:G	rs78456536	A	G	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr13	84455131	84455132	chr13:84455132:C:T	rs78552458	C	T	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr13	84492167	84492168	chr13:84492168:G:A	rs9575590	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr13	84553169	84553170	chr13:84553170:A:C	rs11618006	A	C	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr13	84739638	84739639	chr13:84739639:A:G	rs1526010	A	G	A	Sox3.mouse_HMG_2	15	1	-	1.7387060897028774	-2.0410933278029186	CATCATCTGCAGTGATG
chr13	84796072	84796073	chr13:84796073:T:C	rs17386334	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr13	85075151	85075152	chr13:85075152:G:A	rs17079227	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr13	85236726	85236727	chr13:85236727:A:C	rs1927722	A	C	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr13	85332549	85332550	chr13:85332550:A:G	rs9319141	A	G	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr13	85373411	85373412	chr13:85373412:A:G	rs7332804	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr13	85379949	85379950	chr13:85379950:A:G	rs7990259	A	G	A	Sox3.mouse_HMG_2	7	1	-	9.502471851291812	3.9995415700490016	TTTCAATTACATTGAAA
chr13	85538055	85538056	chr13:85538056:G:C	rs58360636	G	C	G	Sox3.mouse_HMG_2	13	1	+	6.188097536852763	-0.19916250207444858	TATTAATTTTATTGTGT
chr13	85943906	85943907	chr13:85943907:A:G	rs71442107	A	G	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr13	86020654	86020655	chr13:86020655:C:G	rs1050136154	C	G	C	Sox3.mouse_HMG_2	3	1	+	3.8597939280283473	-2.1907253818609504	AATCAGTTCCAGTGGTT
chr13	86088199	86088200	chr13:86088200:T:C	rs74102186	T	C	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr13	87127857	87127858	chr13:87127858:A:T	rs9524701	A	T	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr13	87379365	87379366	chr13:87379366:A:G	rs9584585	A	G	A	Sox3.mouse_HMG_2	10	1	+	4.348348026714657	-2.560406752600564	GATCCATGACAGTGACA
chr13	87390653	87390654	chr13:87390654:C:A	rs72639317	C	A	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr13	88042567	88042568	chr13:88042568:C:T	rs1413275	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr13	88218142	88218143	chr13:88218143:T:C	rs4636774	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr13	90146016	90146017	chr13:90146017:A:G	rs1813389	A	G	g	Sox3.mouse_HMG_2	10	1	+	4.395629203242568	-2.5131255760726527	GATCAACCTTATTGAAT
chr13	90202499	90202500	chr13:90202500:C:T	rs3848044	C	T	C	Sox3.mouse_HMG_2	0	1	+	3.4046383653195886	2.919503351065481	CATTATTTGTATTGAAT
chr13	90281790	90281791	chr13:90281791:A:G	rs12866611	A	G	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr13	90282029	90282030	chr13:90282030:G:A	rs9522905	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr13	90768809	90768810	chr13:90768810:G:C	rs7328899	G	C	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr13	90927073	90927074	chr13:90927074:A:T	rs9583853	A	T	A	Sox3.mouse_HMG_2	10	1	+	4.245260754963172	-2.6634940243520475	CGTCAATTTAATAGATT
chr13	91041974	91041975	chr13:91041975:T:G	rs76386927	T	G	T	Sox3.mouse_HMG_2	10	1	-	4.724917423677068	-2.1838373556381523	TAACTATTGCAGTGATT
chr13	91631077	91631078	chr13:91631078:A:G	rs10492614	A	G	A	Sox3.mouse_HMG_2	2	1	-	8.77104428844421	2.4041469819184664	AATGAATTTCAGTGATT
chr13	92029313	92029314	chr13:92029314:T:C	rs35021705	T	C	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr13	92413634	92413635	chr13:92413635:T:G	rs4773681	T	G	G	Sox3.mouse_HMG_2	12	1	+	7.736200678378225	1.349612005706509	GATCAAGGGTAGTGAAA
chr13	93118621	93118622	chr13:93118622:G:A	rs9523926	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr13	94146061	94146062	chr13:94146062:G:A	rs495705	G	A	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr13	94154698	94154699	chr13:94154699:A:T	rs685049	A	T	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr13	94305354	94305355	chr13:94305355:C:T	rs72647623	C	T	C	Sox3.mouse_HMG_2	7	1	-	8.766502267908109	2.137680772820052	GTTCAATGTTAATGAAT
chr13	94584091	94584092	chr13:94584092:A:G	rs61965578	A	G	A	Sox3.mouse_HMG_2	5	1	-	2.5054740936963897	2.5054740936963897	CATCATTGTCAGTGTAC
chr13	94608166	94608167	chr13:94608167:T:C	rs9524556	T	C	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr13	94978602	94978603	chr13:94978603:A:T	rs9590150	A	T	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr13	95000052	95000053	chr13:95000053:C:T	rs9556451	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr13	96223544	96223545	chr13:96223545:C:G	rs16951722	C	G	C	Sox3.mouse_HMG_2	11	1	-	5.232321153035604	-0.07153086901090695	TGTCAATGCTAGGGAAG
chr13	96256173	96256174	chr13:96256174:G:A	rs9525172	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr13	96385334	96385335	chr13:96385335:A:G	rs9516673	A	G	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr13	96460667	96460668	chr13:96460668:C:T	rs1887602	C	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr13	96747337	96747338	chr13:96747338:T:A	rs57261742	T	A	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr13	97257866	97257867	chr13:97257867:G:A	rs78251291	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr13	97277425	97277426	chr13:97277426:C:T	rs2389823	C	T	C	Sox3.mouse_HMG_2	10	1	+	6.409081015293022	6.409081015293022	TATCAATGCTCTTGACA
chr13	97505193	97505194	chr13:97505194:T:C	rs186442766	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr13	97928611	97928612	chr13:97928612:T:C	rs9517133	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr13	98238801	98238802	chr13:98238802:G:T	rs2892898	G	T	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr13	98274417	98274418	chr13:98274418:G:A	rs9517240	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr13	98274445	98274446	chr13:98274446:T:C	rs9517242	T	C	T	Sox3.mouse_HMG_2	11	1	+	3.82262550689107	-2.8617486925692646	CGTTTATTTCATTGATT
chr13	98315918	98315919	chr13:98315919:A:G	rs614880	A	G	A	Sox3.mouse_HMG_2	10	1	+	3.1790319960385287	-3.729722783276691	TCTTATTGTCATTGATA
chr13	98326580	98326581	chr13:98326581:T:C	rs10492708	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.22157343379725	-2.1677080005806384	TCCCAATTGTAGTGAAT
chr13	98371264	98371265	chr13:98371265:G:A	rs9556942	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr13	98371274	98371275	chr13:98371275:A:G	rs7331135	A	G	A	Sox3.mouse_HMG_2	4	1	+	4.513571871302632	-1.8757095630752576	TTTCAATTTTTGTGAAT
chr13	98399258	98399259	chr13:98399259:T:C	rs4772071	T	C	C	Sox3.mouse_HMG_2	12	1	-	2.989479746232495	2.653858211491596	GGCCAATGTTATAGAAT
chr13	98411989	98411990	chr13:98411990:T:C	rs11556829	T	C	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr13	98412909	98412910	chr13:98412910:G:A	rs7323690	G	A	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr13	98525136	98525137	chr13:98525137:G:A	rs9300485	G	A	G	Sox3.mouse_HMG_2	1	1	-	1.374605840836785	1.3948238181274304	CCTCTTTGGCATTGATT
chr13	98673800	98673801	chr13:98673801:T:C	rs1782675	T	C	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr13	98948129	98948130	chr13:98948130:C:T	rs964291888	C	T	C	Sox3.mouse_HMG_2	4	1	+	7.23066180996612	7.23066180996612	TCTCCATGTCAGTGATT
chr13	98996163	98996164	chr13:98996164:T:C	rs912688	T	C	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr13	99198698	99198699	chr13:99198699:G:A	rs1042902686	G	A	G	Sox3.mouse_HMG_2	8	1	+	5.740325307436306	4.52153492269181	GGTTAATTGCAGTGAGG
chr13	99326312	99326313	chr13:99326313:G:A	rs9517687	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr13	99352775	99352776	chr13:99352776:A:G	rs79199942	A	G	A	Sox3.mouse_HMG_2	10	1	+	2.9066388707880444	-4.002115908527175	CGTCAGTTACAGTGAAA
chr13	99381634	99381635	chr13:99381635:G:A	rs7317555	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr13	99431979	99431980	chr13:99431980:G:C	rs4772200	G	C	G	Sox3.mouse_HMG_2	0	1	-	2.963479889437256	3.268113406961443	CCTCAATGCCAGGGTTT
chr13	100153542	100153543	chr13:100153543:G:A	rs2390401	G	A	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr13	100634582	100634583	chr13:100634583:A:G	rs2297942	A	G	A	Sox3.mouse_HMG_2	16	1	+	3.7212917736356634	3.932866200120914	CATCTGTTTCATTGATA
chr13	100705153	100705154	chr13:100705154:A:G	chr13:100705154:A:G	A	G	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr13	100805291	100805292	chr13:100805292:A:G	rs4771375	A	G	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr13	100981969	100981970	chr13:100981970:G:C	rs76941131	G	C	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr13	101082838	101082839	chr13:101082839:T:C	rs111383689	T	C	T	Sox3.mouse_HMG_2	10	1	-	4.352330503874878	-2.5564242754403423	CAACAATGTCAGTTGTT
chr13	101082859	101082860	chr13:101082860:G:A	rs17677552	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr13	101154211	101154212	chr13:101154212:T:C	rs79787161	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr13	101329419	101329420	chr13:101329420:T:C	rs506746	T	C	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr13	101383694	101383695	chr13:101383695:G:A	rs9557632	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr13	101649647	101649648	chr13:101649648:A:T	rs1036437	A	T	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr13	101949782	101949783	chr13:101949783:T:G	rs727424	T	G	T	Sox3.mouse_HMG_2	8	1	+	2.988312695411841	2.1746747624076286	CCTCAATCTCATTCATT
chr13	102036181	102036182	chr13:102036182:A:G	rs76726420	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr13	102556573	102556574	chr13:102556574:G:A	rs150422180	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr13	102819427	102819428	chr13:102819428:G:A	rs9554899	G	A	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr13	102905006	102905007	chr13:102905007:A:G	rs9557951	A	G	A	Sox3.mouse_HMG_2	16	1	+	4.431326444338593	4.642900870823843	GTTTAATTTTATTGCTA
chr13	103487557	103487558	chr13:103487558:T:C	rs1333269	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.7488174907059566	-2.640463943671933	TAACAATTGTATAGAAC
chr13	103935261	103935262	chr13:103935262:T:C	rs1336600	T	C	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr13	104065489	104065490	chr13:104065490:T:C	rs2806757	T	C	C	Sox3.mouse_HMG_2	10	1	-	6.089724253285191	-0.8190305260300285	CATCCATGTTATCGATG
chr13	104357000	104357001	chr13:104357001:T:G	rs9519303	T	G	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr13	104357985	104357986	chr13:104357986:A:G	rs7330591	A	G	T	Sox3.mouse_HMG_2	6	1	-	8.090273237044455	1.7009918026665645	TGTCAATGTTAATGAAA
chr13	104383267	104383268	chr13:104383268:C:T	rs16964708	C	T	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr13	104593044	104593045	chr13:104593045:C:T	rs9519399	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr13	104954355	104954356	chr13:104954356:A:G	rs115043767	A	G	a	Sox3.mouse_HMG_2	5	1	+	8.880106973457098	2.4908255390792062	TCTCAATGTTATTGTGA
chr13	105034832	105034833	chr13:105034833:C:T	rs74562607	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr13	105281349	105281350	chr13:105281350:T:C	rs7324140	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr13	105471769	105471770	chr13:105471770:A:G	rs548977399	A	G	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr13	105524203	105524204	chr13:105524204:C:T	rs1362886	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr13	105547958	105547959	chr13:105547959:A:G	rs9586886	A	G	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr13	105915555	105915556	chr13:105915556:C:T	rs35887690	C	T	C	Sox3.mouse_HMG_2	0	1	-	4.948903937640667	3.2524116439380037	GGTCAGTGATATTGAGC
chr13	105924979	105924980	chr13:105924980:G:A	rs12877779	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr13	105941042	105941043	chr13:105941043:T:C	rs17514375	T	C	C	Sox3.mouse_HMG_2	10	1	-	1.9104026400715277	-4.998352139243691	GCTCAACATCAGTGATT
chr13	106064245	106064246	chr13:106064246:G:A	rs7333797	G	A	g	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr13	106145366	106145367	chr13:106145367:C:T	rs12868856	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr13	106295478	106295479	chr13:106295479:C:T	rs16968408	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr13	106587935	106587936	chr13:106587936:C:A	rs2391345	C	A	C	Sox3.mouse_HMG_2	0	1	+	10.405410467558657	9.013551691380183	CCTCAATGATAGTGAAA
chr13	107210809	107210810	chr13:107210810:A:G	rs77079338	A	G	A	Sox3.mouse_HMG_2	16	1	+	3.93475973048265	4.1463341569679	CAACAGTTACAGTGATA
chr13	107586074	107586075	chr13:107586075:T:A	rs2391460	T	A	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr13	107625249	107625250	chr13:107625250:G:A	rs1924430	G	A	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr13	107643253	107643254	chr13:107643254:T:G	rs12429551	T	G	t	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr13	107650134	107650135	chr13:107650135:G:A	rs4772898	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr13	107650164	107650165	chr13:107650165:T:C	rs4771574	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr13	107941229	107941230	chr13:107941230:C:T	rs816986	C	T	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr13	108166328	108166329	chr13:108166329:A:G	rs7337941	A	G	A	Sox3.mouse_HMG_2	1	1	+	3.5899198901023825	1.5835319480829246	TATCAATGATCTTGCTG
chr13	108758584	108758585	chr13:108758585:T:C	rs4772995	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr13	108777760	108777761	chr13:108777761:T:A	rs144828559	T	A	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr13	109152425	109152426	chr13:109152426:C:T	rs9555561	C	T	C	Sox3.mouse_HMG_2	0	1	+	5.688992787609302	5.203857773355195	CATTAATTTCACTGATG
chr13	109219334	109219335	chr13:109219335:C:T	rs9587787	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr13	109682809	109682810	chr13:109682810:T:C	rs9521473	T	C	C	Sox3.mouse_HMG_2	8	1	-	3.1858472040258117	4.404637588770307	GAGCATTGACAGTGATG
chr13	109731308	109731309	chr13:109731309:T:G	rs76447295	T	G	T	Sox3.mouse_HMG_2	6	1	+	2.8726459896979497	-4.035429238095107	GCTCACTGCCAGTGGTA
chr13	109755558	109755559	chr13:109755559:T:C	rs2289046	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.636625536745561	-2.752655897632328	AATCAACTGTATTGGGT
chr13	109773600	109773601	chr13:109773601:T:C	rs56920445	T	C	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr13	110128739	110128740	chr13:110128740:A:G	rs7320138	A	G	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr13	110176002	110176003	chr13:110176003:C:T	rs2005447	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr13	110246522	110246523	chr13:110246523:T:C	rs614282	T	C	T	Sox3.mouse_HMG_2	11	1	+	7.429923266138673	0.7455490666783385	TCACAATTTCATTGGTG
chr13	110303009	110303010	chr13:110303010:C:A	rs56201566	C	A	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr13	110315050	110315051	chr13:110315051:A:C	chr13:110315051:A:C	A	C	A	Sox3.mouse_HMG_2	14	1	-	2.3221471838393235	3.0234624378163675	TATCAATGGCAGGGTGA
chr13	110473585	110473586	chr13:110473586:T:A	rs9521796	T	A	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr13	110577009	110577010	chr13:110577010:T:C	rs7985063	T	C	t	Sox3.mouse_HMG_2	11	1	+	3.3509552041236836	-3.333418995336651	AAGCATTGATATTGATA
chr13	110637350	110637351	chr13:110637351:A:G	rs3825467	A	G	A	Sox3.mouse_HMG_2	5	1	-	4.021266795286417	4.021266795286417	GTTCATTGTCAGTGTTT
chr13	110662556	110662557	chr13:110662557:C:T	rs1853861	C	T	T	Sox3.mouse_HMG_2	13	1	-	3.661383594929999	-2.390254909256313	CCTCAATTAAATTGGTA
chr13	110709822	110709823	chr13:110709823:A:G	rs9521909	A	G	G	Sox3.mouse_HMG_2	5	1	+	3.0320627415519468	-3.357218692825943	GATCCATTTAATTGAAG
chr13	110811224	110811225	chr13:110811225:A:G	rs61970050	A	G	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr13	110819339	110819340	chr13:110819340:G:A	chr13:110819340:G:A	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr13	110913774	110913775	chr13:110913775:T:C	rs9588296	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr13	110989492	110989493	chr13:110989493:G:A	rs117208300	G	A	G	Sox3.mouse_HMG_2	3	1	-	2.803528107151385	-2.053327768070836	GTTCAATGCTGTTGGGT
chr13	111127038	111127039	chr13:111127039:A:G	rs73633230	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr13	111216707	111216708	chr13:111216708:A:G	rs7995910	A	G	G	Sox3.mouse_HMG_2	1	1	+	1.7753467080827399	-0.23104123393671921	CATCAGTGGTAGGGAAG
chr13	111505979	111505980	chr13:111505980:T:A	rs1970032	T	A	A	Sox3.mouse_HMG_2	10	1	-	1.6750668922660772	-5.2336878870491415	GCTGAGTGGCAGTGATT
chr13	111505982	111505983	chr13:111505983:C:T	rs1970033	C	T	C	Sox3.mouse_HMG_2	7	1	-	1.6750668922660772	-4.953754602821979	GCTGAGTGGCAGTGATT
chr13	111561765	111561766	chr13:111561766:G:A	rs7321593	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr13	111636391	111636392	chr13:111636392:T:G	rs7338987	T	G	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr13	111952595	111952596	chr13:111952596:A:G	rs735223	A	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr13	111958705	111958706	chr13:111958706:G:T	rs6577020	G	T	G	Sox3.mouse_HMG_2	8	1	+	3.0619170658787622	3.8755549988829747	GCACAATGGCATAGAGG
chr13	112012049	112012050	chr13:112012050:T:C	rs1277778	T	C	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr13	112435650	112435651	chr13:112435651:C:T	rs9549520	C	T	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr13	112835504	112835505	chr13:112835505:G:A	rs9549568	G	A	g	Sox3.mouse_HMG_2	6	1	-	4.683825539911158	11.07310697428905	CCTCAACGGCAGTGAGT
chr13	112946608	112946609	chr13:112946609:T:C	rs12864060	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.076937477885409	-1.6074367215749268	CCTCAAGGTCATTGTTT
chr13	113074776	113074777	chr13:113074777:G:T	rs35463691	G	T	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr13	113130092	113130093	chr13:113130093:T:G	rs483949	T	G	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr13	113152095	113152096	chr13:113152096:G:A	rs906279867	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr13	113522977	113522978	chr13:113522978:T:C	rs2770040	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr13	113550373	113550374	chr13:113550374:A:G	rs2261709	A	G	.	Sox3.mouse_HMG_2	1	1	+	2.604109896021555	0.5977219540020984	TATCTATTTTGGTGATT
chr13	113586456	113586457	chr13:113586457:C:G	rs79658657	C	G	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr13	114219407	114219408	chr13:114219408:A:G	rs7998976	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr13	114310239	114310240	chr13:114310240:A:G	rs9525326	A	G	G	Sox3.mouse_HMG_2	12	1	-	3.0132476971035986	-3.0377194408272183	AATCAATGCTAGTTGAG
chr14	16097982	16097983	chr14:16097983:A:C	rs1212023664	A	C	.	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr14	16098649	16098650	chr14:16098650:C:T	rs1051258091	C	T	.	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr14	16098685	16098686	chr14:16098686:A:G	rs1033182279	A	G	.	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr14	20144305	20144306	chr14:20144306:A:G	rs10131326	A	G	.	Sox3.mouse_HMG_2	12	1	-	2.0118888763127174	-4.039078261618099	CCACAAAGGTATTGGTG
chr14	20590265	20590266	chr14:20590266:G:T	rs3827902	G	T	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr14	20610498	20610499	chr14:20610499:A:T	rs59734947	A	T	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr14	20987932	20987933	chr14:20987933:C:A	rs2741729	C	A	C	Sox3.mouse_HMG_2	9	1	-	6.21551570853803	12.199496968422348	CCTCAATGGGAGTGAAT
chr14	21107568	21107569	chr14:21107569:A:G	rs750740873	A	G	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr14	21795648	21795649	chr14:21795649:C:T	rs12434548	C	T	c	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr14	21847113	21847114	chr14:21847114:C:T	rs2075489	C	T	c	Sox3.mouse_HMG_2	0	1	+	2.199965327591717	1.7148303133376086	CATCAACGGTTTTGAGG
chr14	21894903	21894904	chr14:21894904:C:G	rs12890675	C	G	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr14	21939788	21939789	chr14:21939789:C:T	rs11847974	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr14	21979007	21979008	chr14:21979008:G:A	rs2075484	G	A	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr14	21979010	21979011	chr14:21979011:A:G	rs2075485	A	G	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr14	22125035	22125036	chr14:22125036:A:C	rs12431484	A	C	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr14	22227030	22227031	chr14:22227031:C:T	rs2075496	C	T	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr14	22265502	22265503	chr14:22265503:T:G	rs7151848	T	G	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr14	22553735	22553736	chr14:22553736:T:C	rs969419299	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr14	22569710	22569711	chr14:22569711:G:A	rs5742838	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr14	22784159	22784160	chr14:22784160:C:A	rs72681916	C	A	C	Sox3.mouse_HMG_2	1	1	+	0.4874700636512545	3.202911599995197	CCTCAAGGGCAGAGATG
chr14	23062983	23062984	chr14:23062984:T:C	rs114105349	T	C	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr14	23775489	23775490	chr14:23775490:A:G	rs976222	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr14	23775496	23775497	chr14:23775497:A:C	rs976221	A	C	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr14	23829804	23829805	chr14:23829805:G:T	rs12898165	G	T	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr14	23912243	23912244	chr14:23912244:G:C	rs8010302	G	C	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr14	23987766	23987767	chr14:23987767:G:A	rs56171184	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr14	24245289	24245290	chr14:24245290:T:G	rs144643902	T	G	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr14	24536124	24536125	chr14:24536125:G:T	rs987630	G	T	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr14	24693455	24693456	chr14:24693456:C:T	rs10873238	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr14	24706775	24706776	chr14:24706776:C:T	rs74875195	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr14	24725363	24725364	chr14:24725364:T:C	rs206226	T	C	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr14	24833626	24833627	chr14:24833627:T:C	rs79868489	T	C	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr14	25007224	25007225	chr14:25007225:A:G	rs1957762	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr14	25042473	25042474	chr14:25042474:G:A	rs11626436	G	A	A	Sox3.mouse_HMG_2	8	1	-	3.463795617242437	4.718217583398105	GCTAAATGCTATTGACC
chr14	26403907	26403908	chr14:26403908:G:A	rs9888572	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr14	26422702	26422703	chr14:26422703:G:A	rs61988519	G	A	A	Sox3.mouse_HMG_2	3	1	-	5.728846753866794	0.8719908786445716	GTTCAAGGGCATTGAAA
chr14	26523513	26523514	chr14:26523514:C:T	rs73601914	C	T	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr14	26594860	26594861	chr14:26594861:A:C	rs1950409	A	C	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr14	26595699	26595700	chr14:26595700:A:G	rs17111434	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr14	26802117	26802118	chr14:26802118:G:A	rs3950060	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr14	26841956	26841957	chr14:26841957:C:G	rs1956818	C	G	C	Sox3.mouse_HMG_2	13	1	-	1.813621660851667	-4.573638378075545	GAGCAATGGAAATGATT
chr14	26967147	26967148	chr14:26967148:G:C	rs548866406	G	C	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr14	26967169	26967170	chr14:26967170:C:G	chr14:26967170:C:G	C	G	C	Sox3.mouse_HMG_2	3	1	+	3.6605255187415926	-2.3899937911477034	AGTCAATGCCATTCTTT
chr14	27740245	27740246	chr14:27740246:A:C	rs139000799	A	C	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr14	27784278	27784279	chr14:27784279:A:T	rs61974426	A	T	a	Sox3.mouse_HMG_2	10	1	+	2.962381878448544	-3.9463729008666766	TGACAATGTGAGTGAGA
chr14	28129745	28129746	chr14:28129746:C:G	rs1191379	C	G	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr14	28783552	28783553	chr14:28783553:A:G	rs952829086	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr14	29030484	29030485	chr14:29030485:C:G	rs17114423	C	G	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr14	29384482	29384483	chr14:29384483:T:C	rs1962751	T	C	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr14	29529627	29529628	chr14:29529628:G:T	rs1191554	G	T	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr14	30109559	30109560	chr14:30109560:C:T	rs1837683	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr14	30109592	30109593	chr14:30109593:T:C	rs225864	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr14	30159504	30159505	chr14:30159505:A:C	rs555403235	A	C	A	Sox3.mouse_HMG_2	15	1	-	0.8511917532852011	-1.8859353914348245	CCTCCATGGCAGAGATT
chr14	30355663	30355664	chr14:30355664:G:A	rs8018224	G	A	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr14	30775283	30775284	chr14:30775284:G:A	rs7160558	G	A	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr14	30797685	30797686	chr14:30797686:A:G	rs2518665	A	G	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr14	31194290	31194291	chr14:31194291:G:C	rs141161645	G	C	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr14	31194309	31194310	chr14:31194310:T:C	rs145323103	T	C	T	Sox3.mouse_HMG_2	2	1	+	8.011500066922283	1.6446027603965367	TTTCAATTATAGTGGTG
chr14	31195441	31195442	chr14:31195442:C:T	rs74440743	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr14	31199852	31199853	chr14:31199853:T:C	rs61995486	T	C	t	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr14	31251480	31251481	chr14:31251481:A:G	rs7494025	A	G	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr14	31326154	31326155	chr14:31326155:A:G	rs3736917	A	G	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr14	31458318	31458319	chr14:31458319:G:A	rs145449343	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr14	31696256	31696257	chr14:31696257:G:C	rs12878072	G	C	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr14	31929933	31929934	chr14:31929934:G:A	rs7151312	G	A	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr14	31929949	31929950	chr14:31929950:C:A	rs10146435	C	A	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr14	32545120	32545121	chr14:32545121:C:T	rs11844955	C	T	C	Sox3.mouse_HMG_2	14	1	-	3.942070190073175	7.260136459844776	GGTCAAATGTATTGGTC
chr14	32602870	32602871	chr14:32602871:C:T	rs72667969	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr14	33257230	33257231	chr14:33257231:G:C	rs243297	G	C	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr14	33309365	33309366	chr14:33309366:C:T	rs1279473	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr14	33333828	33333829	chr14:33333829:C:G	rs17567572	C	G	C	Sox3.mouse_HMG_2	3	1	+	5.313163765714147	-0.737355544175149	AGTCCATTTTATTGAAG
chr14	33769160	33769161	chr14:33769161:T:C	rs733315	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr14	33852051	33852052	chr14:33852052:T:C	rs1015257936	T	C	T	Sox3.mouse_HMG_2	1	1	-	3.259529388812974	1.2531414467935165	TATTATTGCCAGTGATA
chr14	34372492	34372493	chr14:34372493:C:G	rs12891015	C	G	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr14	34372515	34372516	chr14:34372516:G:A	rs17102460	G	A	G	Sox3.mouse_HMG_2	7	1	-	4.3693011098857255	9.872231391128537	CATCATTCGCATTGATT
chr14	34386846	34386847	chr14:34386847:C:T	rs60270964	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr14	34687804	34687805	chr14:34687805:A:T	rs58753655	A	T	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr14	34688060	34688061	chr14:34688061:T:G	rs11156854	T	G	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr14	34702011	34702012	chr14:34702012:G:A	rs12883300	G	A	G	Sox3.mouse_HMG_2	7	1	+	2.7793267927705343	-3.849494702317521	TGGCAATGTTACTGAAT
chr14	34702016	34702017	chr14:34702017:T:C	rs76240393	T	C	T	Sox3.mouse_HMG_2	12	1	+	2.7793267927705343	-3.271640345160282	TGGCAATGTTACTGAAT
chr14	34705808	34705809	chr14:34705809:G:A	rs76563724	G	A	g	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr14	34911930	34911931	chr14:34911931:G:A	rs12878219	G	A	G	Sox3.mouse_HMG_2	14	1	+	2.211146352752135	5.529212622523736	GAGGAATGTTAGTGGTC
chr14	35197254	35197255	chr14:35197255:C:G	rs4981273	C	G	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr14	35321260	35321261	chr14:35321261:T:G	rs7156944	T	G	G	Sox3.mouse_HMG_2	6	1	+	3.800139821163692	-3.1079354066293656	GGTCAATTGTGGTGGTG
chr14	36452124	36452125	chr14:36452125:T:C	rs17104524	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr14	36604850	36604851	chr14:36604851:T:C	rs72677959	T	C	T	Sox3.mouse_HMG_2	4	1	-	6.529280717849005	0.13999928347111784	GAGCATTTTTATTGATT
chr14	37123175	37123176	chr14:37123176:C:T	rs7151191	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr14	37466585	37466586	chr14:37466586:G:A	rs10134469	G	A	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr14	37597342	37597343	chr14:37597343:C:T	rs2181180	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr14	37597369	37597370	chr14:37597370:A:G	rs12587630	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr14	37791786	37791787	chr14:37791787:T:C	rs4901274	T	C	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr14	37796868	37796869	chr14:37796869:C:T	rs9805910	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr14	37887847	37887848	chr14:37887848:G:A	rs143935351	G	A	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr14	37968405	37968406	chr14:37968406:C:T	rs10134624	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr14	38073546	38073547	chr14:38073547:A:G	rs10132648	A	G	A	Sox3.mouse_HMG_2	12	1	-	4.424090320959708	-1.6268768169711092	CTTCAAATTTAGTGAAA
chr14	38121818	38121819	chr14:38121819:T:C	rs17557166	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr14	38121840	38121841	chr14:38121841:C:T	rs79765696	C	T	C	Sox3.mouse_HMG_2	13	1	-	3.179237139396429	-2.8724013647898827	CATCAACTTTATCGAAG
chr14	38126749	38126750	chr14:38126750:A:T	rs12432704	A	T	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr14	38127782	38127783	chr14:38127783:G:A	rs2415447	G	A	G	Sox3.mouse_HMG_2	13	1	+	1.2990423572200716	-4.7525961469662406	GGTCACTGGTATGGAAT
chr14	38189562	38189563	chr14:38189563:G:A	rs2812086	G	A	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr14	38485726	38485727	chr14:38485727:C:T	rs8020485	C	T	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr14	38723437	38723438	chr14:38723438:G:A	rs59566391	G	A	G	Sox3.mouse_HMG_2	3	1	-	8.343440535419436	3.4865846601972126	CAACAATGACAGTGGTG
chr14	39090839	39090840	chr14:39090840:T:A	rs10134166	T	A	T	Sox3.mouse_HMG_2	2	1	+	6.26661489795651	2.9849581221729724	GATCAATGCCCTTGTTA
chr14	39113490	39113491	chr14:39113491:G:C	rs2415533	G	C	G	Sox3.mouse_HMG_2	1	1	+	3.9076529871626144	3.1985993928381307	AGTCAATTGTATTCACT
chr14	40055300	40055301	chr14:40055301:C:G	rs17110201	C	G	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr14	40055300	40055301	chr14:40055301:C:T	chr14:40055301:C:T	C	T	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr14	40318295	40318296	chr14:40318296:G:A	rs1546937	G	A	A	Sox3.mouse_HMG_2	11	1	+	3.653915051376724	-0.9175690769565613	AGGCAATGACAGTGAGG
chr14	40414437	40414438	chr14:40414438:C:A	rs61988107	C	A	C	Sox3.mouse_HMG_2	16	1	+	2.22055967673875	3.248256610280005	GATCAGTGGTATTCAAC
chr14	40849355	40849356	chr14:40849356:G:C	rs8021986	G	C	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr14	41603895	41603896	chr14:41603896:A:C	rs17112127	A	C	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr14	41603933	41603934	chr14:41603934:C:A	rs1118860	C	A	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr14	41742812	41742813	chr14:41742813:G:A	rs58922111	G	A	A	Sox3.mouse_HMG_2	5	1	+	2.633702778853059	9.022984213230949	CATCAGTGGTTTTGAAG
chr14	41786002	41786003	chr14:41786003:A:G	rs117866579	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.9834811802949717	-2.405800254082918	GAACAATGCCAGTCAGT
chr14	42328895	42328896	chr14:42328896:C:G	rs72676303	C	G	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr14	42508611	42508612	chr14:42508612:T:G	rs10131395	T	G	T	Sox3.mouse_HMG_2	10	1	-	3.9267129208352554	-2.9820418584799664	GAGGAATGTCATTGGTA
chr14	42569263	42569264	chr14:42569264:G:C	rs12898123	G	C	G	Sox3.mouse_HMG_2	13	1	+	5.997630801720289	-0.38962923720692194	GCACAATGGTCTTGATT
chr14	42805067	42805068	chr14:42805068:G:A	rs72685940	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr14	43019812	43019813	chr14:43019813:C:T	rs2415786	C	T	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr14	43153548	43153549	chr14:43153549:T:C	rs1899147	T	C	T	Sox3.mouse_HMG_2	11	1	+	4.41294038021596	-2.2714338192443764	TTTCAAAGATATTGAAA
chr14	43535776	43535777	chr14:43535777:G:A	rs1815641	G	A	a	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr14	43535791	43535792	chr14:43535792:G:A	rs1815640	G	A	g	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr14	44405245	44405246	chr14:44405246:A:T	rs17627207	A	T	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr14	44433580	44433581	chr14:44433581:C:T	rs1958512	C	T	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr14	44455857	44455858	chr14:44455858:T:C	rs72687023	T	C	T	Sox3.mouse_HMG_2	4	1	-	2.691517482781169	-3.6977639515967193	GGCCATTGTTAGTGATG
chr14	44532472	44532473	chr14:44532473:T:C	rs2152497	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr14	44549516	44549517	chr14:44549517:G:T	rs17548372	G	T	G	Sox3.mouse_HMG_2	10	1	+	6.4293704739014546	6.4293704739014546	GTTCAATTGTGGTGATG
chr14	44702141	44702142	chr14:44702142:C:A	rs17551760	C	A	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr14	45083821	45083822	chr14:45083822:G:A	rs77954143	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr14	45743996	45743997	chr14:45743997:C:T	rs1266224	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr14	46490644	46490645	chr14:46490645:T:C	rs28636061	T	C	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr14	46490656	46490657	chr14:46490657:T:G	rs2642106	T	G	G	Sox3.mouse_HMG_2	5	1	-	8.837249592794429	1.9291743650013715	TGACAATTTCAGTGATC
chr14	46661827	46661828	chr14:46661828:G:A	rs80351721	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr14	47291407	47291408	chr14:47291408:A:G	rs75460422	A	G	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr14	47365090	47365091	chr14:47365091:A:G	rs8006114	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.5007304525756107	-2.888550981802279	CTTCAATGGGATTGGGG
chr14	47442152	47442153	chr14:47442153:G:A	chr14:47442153:G:A	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr14	47865775	47865776	chr14:47865776:G:A	rs1950761	G	A	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr14	48289213	48289214	chr14:48289214:C:G	rs1620753	C	G	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr14	48289221	48289222	chr14:48289222:A:G	rs1769514	A	G	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr14	48390075	48390076	chr14:48390076:G:C	rs1440394	G	C	C	Sox3.mouse_HMG_2	13	1	+	5.189736003098075	-1.1975240358291368	CCTAAATTGTATTGAAG
chr14	48694520	48694521	chr14:48694521:T:C	rs76035113	T	C	T	Sox3.mouse_HMG_2	2	1	-	3.067513980284449	1.195296089388095	GGACATTTCCAGTGATT
chr14	48963601	48963602	chr14:48963602:A:C	rs8003886	A	C	C	Sox3.mouse_HMG_2	5	1	+	4.1385928463901624	-2.7694823814028946	TATCTATGCTATAGATA
chr14	49058484	49058485	chr14:49058485:C:T	rs1956090	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr14	49305982	49305983	chr14:49305983:A:G	rs12879782	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr14	49576801	49576802	chr14:49576802:A:T	rs4581611	A	T	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr14	49581353	49581354	chr14:49581354:C:T	rs17774817	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr14	49615767	49615768	chr14:49615768:A:T	rs112806337	A	T	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr14	49768648	49768649	chr14:49768649:C:A	rs1230848643	C	A	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr14	49985520	49985521	chr14:49985521:A:G	rs12884799	A	G	A	Sox3.mouse_HMG_2	10	1	+	4.962052463528339	-1.946702315786882	TTTTAATTTCATTGTTA
chr14	50014115	50014116	chr14:50014116:C:T	rs2355658	C	T	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr14	50555046	50555047	chr14:50555047:G:A	rs61476576	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr14	51023168	51023169	chr14:51023169:C:T	rs1953891	C	T	C	Sox3.mouse_HMG_2	11	1	-	3.750760819645707	-0.8207233086875787	GATAAATTTAAGTGATA
chr14	51293984	51293985	chr14:51293985:G:A	rs7160284	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr14	51398046	51398047	chr14:51398047:A:T	rs140423027	A	T	A	Sox3.mouse_HMG_2	5	1	+	3.1751262202669563	-3.7329490075261007	CAACAATTTTTTTGGTC
chr14	51398054	51398055	chr14:51398055:G:T	rs28667624	G	T	T	Sox3.mouse_HMG_2	13	1	+	3.1751262202669563	-3.2121338186602553	CAACAATTTTTTTGGTC
chr14	51458204	51458205	chr14:51458205:C:T	rs12889345	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr14	51526018	51526019	chr14:51526019:T:G	rs8022389	T	G	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr14	51609290	51609291	chr14:51609291:C:T	rs1956580	C	T	T	Sox3.mouse_HMG_2	12	1	+	2.3495964622415477	8.400563600172365	CATCAATATTATCGTTG
chr14	51609291	51609292	chr14:51609292:G:A	rs7153647	G	A	A	Sox3.mouse_HMG_2	13	1	+	2.3495964622415477	-3.702042041944764	CATCAATATTATCGTTG
chr14	51845747	51845748	chr14:51845748:A:T	rs11621466	A	T	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr14	51931555	51931556	chr14:51931556:T:G	rs1253698	T	G	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr14	51944224	51944225	chr14:51944225:A:G	rs8014732	A	G	G	Sox3.mouse_HMG_2	7	1	-	3.882142099972172	-1.6207881812706413	TGTCAATTGCATTTTTT
chr14	51944242	51944243	chr14:51944243:A:G	rs8014746	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr14	52131410	52131411	chr14:52131411:G:A	rs74786221	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr14	52266933	52266934	chr14:52266934:C:T	rs33998702	C	T	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr14	52266980	52266981	chr14:52266981:C:T	rs803011	C	T	t	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr14	52577506	52577507	chr14:52577507:C:T	rs2357800	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr14	53054929	53054930	chr14:53054930:G:A	rs12880404	G	A	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr14	54084785	54084786	chr14:54084786:T:A	rs11621397	T	A	T	Sox3.mouse_HMG_2	10	1	-	4.775344277703661	-2.133410501611559	TAACAATGGCATTAAGA
chr14	54312412	54312413	chr14:54312413:T:C	rs751148248	T	C	T	Sox3.mouse_HMG_2	0	1	-	3.5906607781167597	5.2871530718194215	AAGCAGTGGCAGTGATT
chr14	54441501	54441502	chr14:54441502:T:G	rs192720261	T	G	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr14	54441554	54441555	chr14:54441555:T:A	rs184540992	T	A	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr14	54671755	54671756	chr14:54671756:G:A	rs80235742	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr14	55005168	55005169	chr14:55005169:T:C	rs3783646	T	C	T	Sox3.mouse_HMG_2	2	1	+	1.4150909603469657	-4.951806346178782	CATCAATCCCACTGAGT
chr14	55028480	55028481	chr14:55028481:A:T	rs1187876	A	T	A	Sox3.mouse_HMG_2	14	1	-	3.0202383263027843	7.03961985005143	AGCCAATGATATTGTTA
chr14	55029412	55029413	chr14:55029413:G:C	rs1212641	G	C	C	Sox3.mouse_HMG_2	3	1	+	4.898461106752756	10.948980416642055	ATTGAATTGCAGTGATG
chr14	55063401	55063402	chr14:55063402:T:C	rs3742564	T	C	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr14	55131898	55131899	chr14:55131899:G:T	rs78793419	G	T	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr14	55397110	55397111	chr14:55397111:C:A	rs9323285	C	A	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr14	55711050	55711051	chr14:55711051:G:T	rs75862063	G	T	G	Sox3.mouse_HMG_2	8	1	-	4.975579156363825	4.197572804770785	TTTTAATTCTATTGTTT
chr14	55826955	55826956	chr14:55826956:C:T	rs75341466	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr14	56453488	56453489	chr14:56453489:A:G	rs1307538	A	G	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr14	56525273	56525274	chr14:56525274:A:G	rs12897575	A	G	A	Sox3.mouse_HMG_2	11	1	-	7.29162618979384	0.6072519903335045	TTTCATTGATATTGATT
chr14	56543601	56543602	chr14:56543602:G:C	rs10142042	G	C	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr14	56555655	56555656	chr14:56555656:G:T	rs2345149	G	T	T	Sox3.mouse_HMG_2	13	1	+	1.9543747301900058	-4.432885308737205	GGTCCATTGTTTTGATT
chr14	56816564	56816565	chr14:56816565:C:T	rs198262	C	T	T	Sox3.mouse_HMG_2	6	1	+	8.071346344401459	14.460627778779347	CATCAACGTCAGTGAAA
chr14	56874566	56874567	chr14:56874567:T:A	rs8004898	T	A	T	Sox3.mouse_HMG_2	12	1	+	4.5128999974879935	-1.5380671404428234	TGACGATGTTATTGAGT
chr14	57512239	57512240	chr14:57512240:C:T	rs398723	C	T	T	Sox3.mouse_HMG_2	9	1	+	5.320101047024896	6.012753589896856	GAAAAATTACATTGATG
chr14	57747048	57747049	chr14:57747049:A:G	rs4423330	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr14	57849201	57849202	chr14:57849202:C:T	rs2010213	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr14	58048792	58048793	chr14:58048793:T:C	rs10483694	T	C	T	Sox3.mouse_HMG_2	0	1	-	3.064953819401805	4.761446113104467	ACTCAATGTCAGTCACT
chr14	58086180	58086181	chr14:58086181:T:C	rs12433262	T	C	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr14	58657061	58657062	chr14:58657062:A:G	rs698020	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.199298990090308	-2.1899824442875806	TATCAATGACAAAGATT
chr14	58793072	58793073	chr14:58793073:C:T	rs12050225	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr14	58829528	58829529	chr14:58829529:C:T	rs2162491	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr14	59015921	59015922	chr14:59015922:T:G	rs7146482	T	G	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr14	59060758	59060759	chr14:59060759:A:G	rs61629910	A	G	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr14	59081821	59081822	chr14:59081822:T:A	rs59706904	T	A	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr14	59132874	59132875	chr14:59132875:T:C	rs946909	T	C	C	Sox3.mouse_HMG_2	4	1	-	4.015959073958699	-2.3733223604191918	CATCAACTCTATTAATA
chr14	59132875	59132876	chr14:59132876:G:A	rs141527423	G	A	G	Sox3.mouse_HMG_2	3	1	-	4.015959073958699	-0.8408968012635238	CATCAACTCTATTAATA
chr14	59296034	59296035	chr14:59296035:C:A	rs67935962	C	A	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr14	59296037	59296038	chr14:59296038:T:C	rs67324723	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr14	59328790	59328791	chr14:59328791:C:G	rs72726383	C	G	C	Sox3.mouse_HMG_2	3	1	+	4.34192675122066	-1.708592558668637	CACCAATGTCAGTGGGA
chr14	59583700	59583701	chr14:59583701:C:A	rs143983224	C	A	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr14	59998802	59998803	chr14:59998803:A:G	rs74989052	A	G	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr14	60258532	60258533	chr14:60258533:T:G	rs6573299	T	G	T	Sox3.mouse_HMG_2	0	1	+	3.4108243998144228	4.200592931592719	TTTTAAAGTCATTGATG
chr14	60311628	60311629	chr14:60311629:A:G	chr14:60311629:A:G	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr14	61091014	61091015	chr14:61091015:C:T	rs4902027	C	T	c	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr14	61091026	61091027	chr14:61091027:G:C	rs1571384	G	C	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr14	61147281	61147282	chr14:61147282:G:T	rs7148314	G	T	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr14	61178870	61178871	chr14:61178871:A:G	rs140815885	A	G	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr14	61385572	61385573	chr14:61385573:C:T	rs117982890	C	T	C	Sox3.mouse_HMG_2	3	1	+	6.800537969923004	1.9436820947007807	GATCAACGTTAATGATA
chr14	61461902	61461903	chr14:61461903:A:G	rs181077320	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr14	61461915	61461916	chr14:61461916:G:A	rs376995319	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr14	61503154	61503155	chr14:61503155:G:C	rs75238045	G	C	G	Sox3.mouse_HMG_2	16	1	+	2.490748603508553	1.2514772434820478	TGTCCATTTTATTGCTG
chr14	61670702	61670703	chr14:61670703:T:A	rs808909	T	A	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr14	61719866	61719867	chr14:61719867:T:C	rs1165378662	T	C	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr14	61847870	61847871	chr14:61847871:G:A	rs72716781	G	A	G	Sox3.mouse_HMG_2	8	1	+	3.1942724654303065	1.9754820806858087	TGTCAATTGTAGTTTTT
chr14	61899816	61899817	chr14:61899817:A:G	rs11158366	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.8457134029478466	-2.543568031430044	CATCAATGCTATGGTAC
chr14	61909985	61909986	chr14:61909986:T:C	rs217634	T	C	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr14	62546675	62546676	chr14:62546676:T:C	rs7158453	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr14	62614972	62614973	chr14:62614973:T:C	rs1906943	T	C	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr14	62762551	62762552	chr14:62762552:C:A	rs116023426	C	A	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr14	63421603	63421604	chr14:63421604:T:C	rs10145042	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr14	63614001	63614002	chr14:63614002:G:T	rs61984037	G	T	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr14	63633035	63633036	chr14:63633036:G:T	rs75496293	G	T	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr14	63875443	63875444	chr14:63875444:A:G	rs148362867	A	G	A	Sox3.mouse_HMG_2	5	1	-	2.6810853399885213	2.6810853399885213	TGTCATTGTTATTGTGA
chr14	64137915	64137916	chr14:64137916:T:C	rs8007874	T	C	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr14	64203052	64203053	chr14:64203053:C:T	rs6573548	C	T	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr14	64213566	64213567	chr14:64213567:T:C	rs968257	T	C	T	Sox3.mouse_HMG_2	4	1	-	2.2205589554872724	-4.168722478890617	GGTCAATGGTTGTCATT
chr14	64421281	64421282	chr14:64421282:C:T	rs73277965	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr14	64421282	64421283	chr14:64421283:G:A	rs950693651	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr14	64874023	64874024	chr14:64874024:C:G	rs74056084	C	G	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr14	64880930	64880931	chr14:64880931:C:T	rs61012404	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr14	65079414	65079415	chr14:65079415:T:C	rs60077675	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr14	65110577	65110578	chr14:65110578:G:T	chr14:65110578:G:T	G	T	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr14	65321718	65321719	chr14:65321719:C:T	rs57071950	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr14	65321771	65321772	chr14:65321772:A:G	rs73278053	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr14	65636708	65636709	chr14:65636709:G:A	rs17826790	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr14	65790748	65790749	chr14:65790749:A:G	rs11848444	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.1176913696863733	-3.566682829773962	AATAAATGCCATTGGGT
chr14	65831767	65831768	chr14:65831768:C:T	rs7146380	C	T	C	Sox3.mouse_HMG_2	9	1	+	5.0039165869516795	5.696569129823639	TCTCAGTGGCATTGAGA
chr14	65847836	65847837	chr14:65847837:G:A	rs72716478	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr14	66249440	66249441	chr14:66249441:G:C	rs8003342	G	C	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr14	66510855	66510856	chr14:66510856:A:G	rs8005383	A	G	A	Sox3.mouse_HMG_2	6	1	-	6.374281406754495	-0.015000027623396098	TGTCAATGTTAATGTTA
chr14	66715397	66715398	chr14:66715398:A:G	rs7147505	A	G	A	Sox3.mouse_HMG_2	1	1	+	9.811208991955997	7.804821049936538	TATCAATTTTATTTATC
chr14	66715412	66715413	chr14:66715413:C:T	rs138268233	C	T	C	Sox3.mouse_HMG_2	16	1	+	9.811208991955997	11.414202041616447	TATCAATTTTATTTATC
chr14	66745368	66745369	chr14:66745369:C:T	rs766527	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr14	67010929	67010930	chr14:67010930:A:G	rs1955606	A	G	G	Sox3.mouse_HMG_2	8	1	-	4.074932384313286	2.8205104181576157	AAACAATGTCAATGTTT
chr14	67556814	67556815	chr14:67556815:A:G	rs1022612823	A	G	A	Sox3.mouse_HMG_2	11	1	-	5.35952633916184	-1.3248478602984954	GAGCCATGTCATTGATC
chr14	67837305	67837306	chr14:67837306:A:G	rs10146380	A	G	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr14	68000722	68000723	chr14:68000723:A:G	rs1002878060	A	G	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr14	68027455	68027456	chr14:68027456:C:T	rs1288932492	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr14	68158400	68158401	chr14:68158401:G:A	rs1555944	G	A	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr14	68165094	68165095	chr14:68165095:G:A	rs1952246	G	A	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr14	68174662	68174663	chr14:68174663:C:T	rs73288068	C	T	G	Sox3.mouse_HMG_2	6	1	+	3.5960346685364053	9.985316102914295	GATCAACGTTAATGACT
chr14	68309342	68309343	chr14:68309343:T:C	rs11158729	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.930214529217773	-2.459066905160116	AGTCAATGGCACTGGTA
chr14	68309359	68309360	chr14:68309360:G:A	rs58616347	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr14	68376887	68376888	chr14:68376888:G:C	rs2025009	G	C	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr14	68414035	68414036	chr14:68414036:A:G	rs4545737	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr14	68471646	68471647	chr14:68471647:A:G	rs2525507	A	G	A	Sox3.mouse_HMG_2	5	1	+	5.1651334768164245	-1.2241479575614662	GGTCCATGCTATTGTTG
chr14	68513211	68513212	chr14:68513212:A:G	rs1541390	A	G	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr14	68656195	68656196	chr14:68656196:C:T	chr14:68656196:C:T	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr14	68684628	68684629	chr14:68684629:A:G	rs17756914	A	G	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr14	68694456	68694457	chr14:68694457:T:C	rs17106154	T	C	T	Sox3.mouse_HMG_2	5	1	-	7.318203775126951	0.9289223407490605	AGTCAATTGTATTGTGT
chr14	68717052	68717053	chr14:68717053:T:A	rs17106170	T	A	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr14	68772069	68772070	chr14:68772070:A:T	rs140992332	A	T	A	Sox3.mouse_HMG_2	6	1	-	7.150776071850887	0.24270084405782805	AATCAATTGTATTAAAA
chr14	68772079	68772080	chr14:68772080:C:T	rs72731539	C	T	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr14	68940327	68940328	chr14:68940328:G:A	rs56998257	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr14	69001657	69001658	chr14:69001658:C:T	rs242097	C	T	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr14	69585228	69585229	chr14:69585229:A:C	rs893281013	A	C	A	Sox3.mouse_HMG_2	8	1	-	5.010945008956799	4.197307075952588	CACCAATTTTGTTGATT
chr14	69841739	69841740	chr14:69841740:A:C	rs148268147	A	C	A	Sox3.mouse_HMG_2	6	1	+	2.5490828479734846	3.0678766413886516	TCTCAAATCCATTGGTG
chr14	69841757	69841758	chr14:69841758:C:T	rs80234185	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr14	70092990	70092991	chr14:70092991:A:T	rs1544870	A	T	A	Sox3.mouse_HMG_2	16	1	-	3.7272341800819824	3.151938063962786	TAACAATGCCAATGTTT
chr14	70156811	70156812	chr14:70156812:G:A	rs74062812	G	A	G	Sox3.mouse_HMG_2	7	1	+	1.4214562896993712	-5.207365205388685	CATGAATGGCAGGGAAG
chr14	70254474	70254475	chr14:70254475:T:C	rs116299079	T	C	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr14	70399602	70399603	chr14:70399603:A:G	rs2332372	A	G	a	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr14	70422769	70422770	chr14:70422770:C:T	rs146316126	C	T	C	Sox3.mouse_HMG_2	13	1	-	8.873015660838115	2.8213771566518027	CAGCAATGTCAGTGAGA
chr14	70709300	70709301	chr14:70709301:C:T	rs28550295	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr14	70785679	70785680	chr14:70785680:T:C	rs57843652	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr14	70785693	70785694	chr14:70785694:T:C	rs143859497	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.6765834581952386	-2.7126979761826515	TGACAATGTCAATGGTT
chr14	70819718	70819719	chr14:70819719:G:A	rs11844844	G	A	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr14	70827530	70827531	chr14:70827531:T:C	rs61990553	T	C	t	Sox3.mouse_HMG_2	5	1	-	6.905717616735318	0.5164361823574299	ATTCAATGATATTCATT
chr14	70905049	70905050	chr14:70905050:G:A	rs192370093	G	A	G	Sox3.mouse_HMG_2	0	1	+	3.3734436057104795	1.6769513120078148	GATCAATCCCAGTCATT
chr14	71086318	71086319	chr14:71086319:G:T	rs11622673	G	T	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr14	71149212	71149213	chr14:71149213:C:T	rs7154669	C	T	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr14	71582888	71582889	chr14:71582889:C:T	rs141274794	C	T	C	Sox3.mouse_HMG_2	2	1	-	4.213486268771141	6.085704159667495	GTGCAATGTCATGGATA
chr14	72188193	72188194	chr14:72188194:A:G	rs78873191	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.971089089715649	0.5818076553377602	GTCCAATGTTAGTGAAT
chr14	72473795	72473796	chr14:72473796:G:C	rs758265	G	C	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr14	72781924	72781925	chr14:72781925:C:T	rs144516430	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr14	72781952	72781953	chr14:72781953:A:G	rs72730336	A	G	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr14	72955550	72955551	chr14:72955551:C:G	rs3815460	C	G	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr14	73023637	73023638	chr14:73023638:G:A	rs4545732	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr14	73260800	73260801	chr14:73260801:T:G	rs177389	T	G	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr14	73304728	73304729	chr14:73304729:A:G	rs4903107	A	G	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr14	73345516	73345517	chr14:73345517:G:A	rs10136726	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr14	73468174	73468175	chr14:73468175:C:A	rs7158218	C	A	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr14	73950851	73950852	chr14:73950852:T:G	rs112218167	T	G	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr14	73950905	73950906	chr14:73950906:T:C	rs59892091	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr14	74081544	74081545	chr14:74081545:A:G	rs4646859	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr14	74254657	74254658	chr14:74254658:T:C	rs10150826	T	C	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr14	74698613	74698614	chr14:74698614:A:G	rs10138739	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr14	75588341	75588342	chr14:75588342:A:G	rs1288203768	A	G	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr14	75631921	75631922	chr14:75631922:T:C	rs12432793	T	C	C	Sox3.mouse_HMG_2	15	1	+	6.847910904094328	3.0681114865885326	TGTCAGTTGTAGTGATG
chr14	75783374	75783375	chr14:75783375:C:T	chr14:75783375:C:T	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr14	75861543	75861544	chr14:75861544:T:C	rs61980817	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.39377159996475	-3.995509834413139	TTTCAATGACAGAGGTG
chr14	76294474	76294475	chr14:76294475:A:G	rs12897103	A	G	A	Sox3.mouse_HMG_2	12	1	-	6.202253758829881	0.15128662089906458	GAATAATTCCATTGAAT
chr14	76385404	76385405	chr14:76385405:T:C	rs17104397	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr14	76694961	76694962	chr14:76694962:T:C	rs4899604	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr14	76808647	76808648	chr14:76808648:C:T	rs2075774	C	T	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr14	76834875	76834876	chr14:76834876:C:T	rs7493768	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr14	76908858	76908859	chr14:76908859:T:C	rs17105010	T	C	T	Sox3.mouse_HMG_2	2	1	+	1.7873018908002787	-4.579595415725463	CATGAATGGCATGGGTG
chr14	76918339	76918340	chr14:76918340:C:T	chr14:76918340:C:T	C	T	C	Sox3.mouse_HMG_2	0	1	+	5.711296725375452	5.226161711121345	CATGAATGCTATTGCTG
chr14	76956111	76956112	chr14:76956112:T:G	rs7151415	T	G	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr14	77109711	77109712	chr14:77109712:G:A	rs75351083	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr14	77134036	77134037	chr14:77134037:G:A	rs146510138	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr14	77581201	77581202	chr14:77581202:A:C	rs994098546	A	C	A	Sox3.mouse_HMG_2	9	1	-	5.54357553851459	-0.4404057213697286	TTTCAATGTTTTTGACT
chr14	77581205	77581206	chr14:77581206:T:C	rs78827872	T	C	T	Sox3.mouse_HMG_2	5	1	-	5.54357553851459	-0.8457058958632988	TTTCAATGTTTTTGACT
chr14	77599195	77599196	chr14:77599196:T:A	rs7143656	T	A	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr14	77603128	77603129	chr14:77603129:A:G	rs9944097	A	G	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr14	77904111	77904112	chr14:77904112:A:G	rs12590199	A	G	A	Sox3.mouse_HMG_2	10	1	+	2.510575399074315	-4.398179380240905	TGTGAATTCCAGTGAAC
chr14	78005429	78005430	chr14:78005430:T:C	rs931424163	T	C	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr14	78018536	78018537	chr14:78018537:G:T	rs4903689	G	T	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr14	78084467	78084468	chr14:78084468:G:A	rs17106827	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr14	78100870	78100871	chr14:78100871:T:A	rs7144032	T	A	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr14	78576027	78576028	chr14:78576028:A:C	rs80079773	A	C	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr14	78836940	78836941	chr14:78836941:A:G	rs72685456	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr14	78927702	78927703	chr14:78927703:A:G	rs117524700	A	G	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr14	78982702	78982703	chr14:78982703:C:T	rs7142893	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr14	79584805	79584806	chr14:79584806:G:T	rs896139332	G	T	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr14	79878573	79878574	chr14:79878574:C:G	rs10135705	C	G	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr14	80638848	80638849	chr14:80638849:A:T	rs115347571	A	T	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr14	81031780	81031781	chr14:81031781:C:T	rs61978723	C	T	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr14	81234659	81234660	chr14:81234660:T:C	rs12586249	T	C	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr14	81364055	81364056	chr14:81364056:T:C	rs58532062	T	C	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr14	81775284	81775285	chr14:81775285:A:T	rs77177730	A	T	A	Sox3.mouse_HMG_2	8	1	-	3.6769963880280088	1.6445680702792995	AATAAATGTCATGGATG
chr14	81794201	81794202	chr14:81794202:A:C	rs10131470	A	C	C	Sox3.mouse_HMG_2	10	1	+	2.3854491475936404	-4.523305631721579	TGCAAATGTCATTGATA
chr14	82385096	82385097	chr14:82385097:T:A	rs73354976	T	A	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr14	82667564	82667565	chr14:82667565:C:A	rs1777683	C	A	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr14	82836750	82836751	chr14:82836751:T:C	rs8003766	T	C	C	Sox3.mouse_HMG_2	14	1	-	2.2622272217752655	-1.0558390479963358	CATCAAAGCTACTGAAT
chr14	82988140	82988141	chr14:82988141:G:A	rs1263459	G	A	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr14	83158372	83158373	chr14:83158373:T:C	rs10149498	T	C	T	Sox3.mouse_HMG_2	16	1	-	6.659988031635686	6.871562458120937	GATCAGTGTCAGTGTTA
chr14	83210412	83210413	chr14:83210413:G:A	rs68090711	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr14	83210462	83210463	chr14:83210463:T:G	rs1379238	T	G	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr14	84006846	84006847	chr14:84006847:C:T	chr14:84006847:C:T	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr14	84112724	84112725	chr14:84112725:T:G	rs7159548	T	G	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr14	84129029	84129030	chr14:84129030:A:T	rs72703211	A	T	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr14	84209409	84209410	chr14:84209410:C:T	rs67304290	C	T	C	Sox3.mouse_HMG_2	14	1	-	2.107684970127637	5.425751239899238	CTTCAATGGCACTGGGG
chr14	84743078	84743079	chr14:84743079:C:T	rs17258331	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr14	85017176	85017177	chr14:85017177:A:G	rs34238472	A	G	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr14	85115901	85115902	chr14:85115902:T:C	rs12437101	T	C	-	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr14	85542702	85542703	chr14:85542703:A:G	rs117252551	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr14	85559083	85559084	chr14:85559084:C:T	rs2273151	C	T	C	Sox3.mouse_HMG_2	13	1	-	3.1858472040258117	-2.8657913001605	GAGCTATGACAGTGATG
chr14	85567029	85567030	chr14:85567030:G:T	rs75371143	G	T	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr14	85597530	85597531	chr14:85597531:T:C	rs7151273	T	C	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr14	86256850	86256851	chr14:86256851:A:G	rs1505166	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.0642299810750835	-3.3250514533028053	GATCCATTCAAGTGATT
chr14	86782185	86782186	chr14:86782186:G:T	rs1362722	G	T	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr14	87111394	87111395	chr14:87111395:G:A	rs117570743	G	A	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr14	87430532	87430533	chr14:87430533:G:A	rs57329059	G	A	G	Sox3.mouse_HMG_2	4	1	+	4.309266031800619	10.698547466178509	ACTCGATTGTATTGAAG
chr14	87468771	87468772	chr14:87468772:T:A	rs146736449	T	A	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr14	88005279	88005280	chr14:88005280:T:A	rs10139355	T	A	T	Sox3.mouse_HMG_2	2	1	+	3.1668464316713174	-0.11481034411221776	CATAATTGTCAGTGATG
chr14	88006250	88006251	chr14:88006251:C:T	rs8005161	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr14	88096637	88096638	chr14:88096638:C:T	rs751072	C	T	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr14	88249426	88249427	chr14:88249427:A:T	rs6575002	A	T	T	Sox3.mouse_HMG_2	12	1	-	2.8751291442119213	-3.1758379937188947	AGTCAACTGCAGTGAGT
chr14	88504580	88504581	chr14:88504581:C:T	rs1998670	C	T	c	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr14	89209317	89209318	chr14:89209318:G:C	rs7157969	G	C	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr14	89214675	89214676	chr14:89214676:T:C	rs17716878	T	C	T	Sox3.mouse_HMG_2	10	1	-	5.115169953750518	-1.793584825564702	GGTCGATGCCAGTGAAA
chr14	89218051	89218052	chr14:89218052:T:G	rs151243872	T	G	t	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr14	89221311	89221312	chr14:89221312:C:G	rs189274834	C	G	C	Sox3.mouse_HMG_2	0	1	-	3.5012870050092153	3.1966534874850274	GCAAAATGTTATTGGTT
chr14	89292796	89292797	chr14:89292797:G:C	rs759363	G	C	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr14	89310196	89310197	chr14:89310197:T:G	rs75067100	T	G	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr14	89428905	89428906	chr14:89428906:C:T	rs77799240	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr14	89428956	89428957	chr14:89428957:G:A	rs75281015	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr14	89510189	89510190	chr14:89510190:G:A	rs390345	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr14	89915242	89915243	chr14:89915243:A:G	rs4445834	A	G	G	Sox3.mouse_HMG_2	15	1	-	5.175128781079132	1.3953293635733366	TAATAATGTCATTGGTC
chr14	90137704	90137705	chr14:90137705:A:C	rs78293127	A	C	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr14	90247658	90247659	chr14:90247659:G:A	rs11621045	G	A	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr14	90729027	90729028	chr14:90729028:T:C	rs12883490	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr14	90827807	90827808	chr14:90827808:A:G	rs57311938	A	G	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr14	90976639	90976640	chr14:90976640:C:A	rs1570256	C	A	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr14	91022799	91022800	chr14:91022800:C:T	rs552252706	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr14	91090350	91090351	chr14:91090351:G:A	rs77314340	G	A	G	Sox3.mouse_HMG_2	11	1	+	4.562386225731428	-0.009097902601856334	GTTGAATGACAGTGAAT
chr14	91114611	91114612	chr14:91114612:A:G	rs941677	A	G	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr14	91535127	91535128	chr14:91535128:C:T	rs7155340	C	T	t	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr14	91834275	91834276	chr14:91834276:T:G	rs11848727	T	G	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr14	91881335	91881336	chr14:91881336:A:G	rs2430347	A	G	G	Sox3.mouse_HMG_2	12	1	-	1.7942153649089945	-4.256751773021822	CTTCAAATGCATTGACC
chr14	92045567	92045568	chr14:92045568:G:A	rs76462620	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr14	92292651	92292652	chr14:92292652:G:T	rs8020973	G	T	T	Sox3.mouse_HMG_2	6	1	-	3.3654271601654178	2.8466333667502504	CTTCAACGTTATTTATA
chr14	92309844	92309845	chr14:92309845:G:A	rs58056224	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr14	92349920	92349921	chr14:92349921:A:G	rs78682977	A	G	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr14	92349938	92349939	chr14:92349939:C:T	rs80123902	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr14	92425325	92425326	chr14:92425326:A:G	rs12432913	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr14	92425348	92425349	chr14:92425349:A:G	rs4255720	A	G	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr14	92466092	92466093	chr14:92466093:G:A	rs4900124	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr14	92466098	92466099	chr14:92466099:C:T	rs9323876	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.1638456411704583	-3.8877928630158527	ACTCAATTCCATGGGTG
chr14	92585368	92585369	chr14:92585369:G:A	rs10873425	G	A	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr14	92610180	92610181	chr14:92610181:G:A	rs12887586	G	A	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr14	92645965	92645966	chr14:92645966:G:A	rs578113254	G	A	G	Sox3.mouse_HMG_2	14	1	-	3.430720385686006	5.443867479526006	AATCAATTTTAGAGCTT
chr14	92665669	92665670	chr14:92665670:C:T	rs7157523	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr14	92695218	92695219	chr14:92695219:T:C	rs80030123	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr14	92891301	92891302	chr14:92891302:C:G	rs12436684	C	G	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr14	93676010	93676011	chr14:93676011:C:T	rs1998901	C	T	c	Sox3.mouse_HMG_2	11	1	-	2.0339206635793183	-2.537563464753967	TCTCAAAGGCAGTGTTG
chr14	93857422	93857423	chr14:93857423:C:A	rs7154665	C	A	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr14	93862434	93862435	chr14:93862435:G:A	rs10484039	G	A	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr14	93862442	93862443	chr14:93862443:A:T	rs10141633	A	T	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr14	93873986	93873987	chr14:93873987:T:C	rs8013393	T	C	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr14	93873996	93873997	chr14:93873997:G:A	rs8012518	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr14	93897283	93897284	chr14:93897284:A:G	rs732910	A	G	A	Sox3.mouse_HMG_2	8	1	-	7.849568134459558	6.595146168303889	AAACAATGTCATTGGAA
chr14	93943210	93943211	chr14:93943211:T:C	rs78991601	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr14	94311162	94311163	chr14:94311163:T:G	rs8005719	T	G	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr14	94374346	94374347	chr14:94374347:G:A	rs75723855	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr14	94375162	94375163	chr14:94375163:A:C	rs1884549	A	C	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr14	94375204	94375205	chr14:94375205:C:T	rs17751614	C	T	c	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr14	94383544	94383545	chr14:94383545:T:C	rs1028580	T	C	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr14	94452381	94452382	chr14:94452382:T:G	rs11845116	T	G	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr14	94480980	94480981	chr14:94480981:G:A	rs12434141	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr14	94578239	94578240	chr14:94578240:A:G	rs8022491	A	G	G	Sox3.mouse_HMG_2	11	1	-	1.6419986421645563	-5.042375557295781	GTTCCATGGTATTGGGC
chr14	94615775	94615776	chr14:94615776:C:A	rs11160196	C	A	C	Sox3.mouse_HMG_2	15	1	-	4.471547637348293	7.208674782068319	TATCAATGGGATTGGGC
chr14	94655243	94655244	chr14:94655244:G:A	rs72696823	G	A	G	Sox3.mouse_HMG_2	8	1	-	4.927219897486955	6.181641863642623	CATCATTGCTATTGTAT
chr14	94805610	94805611	chr14:94805611:T:C	rs35003236	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr14	94805612	94805613	chr14:94805613:G:T	rs80249960	G	T	G	Sox3.mouse_HMG_2	0	1	+	3.4300663664078446	2.64029783462955	GTACAATGTTAGAGAAA
chr14	95037042	95037043	chr14:95037043:C:G	rs66527455	C	G	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr14	95144414	95144415	chr14:95144415:G:A	rs113197964	G	A	G	Sox3.mouse_HMG_2	12	1	-	4.206634606982387	10.257601744913206	AAACAATGTTAGCGAGG
chr14	95255777	95255778	chr14:95255778:T:C	rs114031522	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr14	95259270	95259271	chr14:95259271:T:C	rs113596013	T	C	C	Sox3.mouse_HMG_2	12	1	+	1.6264852148767186	-4.424481923054097	CCCCAATGTCAGTGGGA
chr14	95277016	95277017	chr14:95277017:T:C	rs10129405	T	C	C	Sox3.mouse_HMG_2	5	1	-	1.3826255033303283	-5.0066559310475585	TCTGAATGGCTTTGATG
chr14	95292221	95292222	chr14:95292222:A:G	rs2144817	A	G	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr14	95445497	95445498	chr14:95445498:T:C	rs10144421	T	C	T	Sox3.mouse_HMG_2	1	1	+	2.207081846432389	2.1868638691417437	ATGCCATGTCATTGATG
chr14	95532026	95532027	chr14:95532027:T:A	rs8013688	T	A	T	Sox3.mouse_HMG_2	15	1	+	4.186764929531582	1.883375236072897	TTTCAATTTCTTTGGTT
chr14	95532028	95532029	chr14:95532029:C:T	rs8012514	C	T	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr14	95935388	95935389	chr14:95935389:C:G	rs117052114	C	G	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr14	96126790	96126791	chr14:96126791:C:T	rs113193431	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr14	96126805	96126806	chr14:96126806:C:T	rs117374193	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr14	96161697	96161698	chr14:96161698:C:T	rs55821580	C	T	C	Sox3.mouse_HMG_2	9	1	+	2.425055644087066	3.1177081869590255	CCTCAATGACAGGGACT
chr14	96914304	96914305	chr14:96914305:G:A	rs575132837	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr14	97127880	97127881	chr14:97127881:C:T	rs2295133	C	T	C	Sox3.mouse_HMG_2	9	1	-	4.256431391416832	4.256431391416832	AATCAATTCGAGTGTTT
chr14	97416963	97416964	chr14:97416964:A:G	rs11624413	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr14	97603100	97603101	chr14:97603101:C:T	rs8005344	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr14	98092951	98092952	chr14:98092952:G:A	rs572864818	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr14	98304880	98304881	chr14:98304881:T:C	rs8013791	T	C	T	Sox3.mouse_HMG_2	4	1	-	9.253412500865956	2.8641310664880644	CCTCAATGTCATTTATG
chr14	98351122	98351123	chr14:98351123:G:A	rs145664949	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr14	98544377	98544378	chr14:98544378:C:T	rs553716820	C	T	C	Sox3.mouse_HMG_2	0	1	-	6.344684359484939	4.6481920657822755	GAACAATGACAGTGGAG
chr14	98766925	98766926	chr14:98766926:C:T	rs138122607	C	T	C	Sox3.mouse_HMG_2	0	1	+	3.5776530219368468	3.092518007682739	CTCCAATGACAGTGAAG
chr14	98829082	98829083	chr14:98829083:G:A	rs145442547	G	A	G	Sox3.mouse_HMG_2	7	1	+	7.164756519393549	0.5359350243054921	TCACAATGGCAGTGAAA
chr14	98830879	98830880	chr14:98830880:T:C	rs151229720	T	C	T	Sox3.mouse_HMG_2	10	1	-	2.0667516352930098	-4.84200314402221	CATCATTTTCAATGAAG
chr14	98907857	98907858	chr14:98907858:T:C	rs8018511	T	C	T	Sox3.mouse_HMG_2	11	1	+	7.038401672624233	0.3540274731638968	CATCATTTTTATTGAGC
chr14	98924465	98924466	chr14:98924466:T:G	rs200324	T	G	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr14	98924479	98924480	chr14:98924480:G:A	rs17545164	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr14	99068385	99068386	chr14:99068386:T:G	rs807366	T	G	G	Sox3.mouse_HMG_2	8	1	+	5.475590443098195	4.6619525100939825	CCACAATGTAAGTGATA
chr14	99136594	99136595	chr14:99136595:T:C	rs10136896	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr14	99566219	99566220	chr14:99566220:G:A	chr14:99566220:G:A	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr14	99598952	99598953	chr14:99598953:G:A	rs58884100	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr14	99616286	99616287	chr14:99616287:T:C	rs12434830	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr14	99708937	99708938	chr14:99708938:C:G	rs12434024	C	G	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr14	99708946	99708947	chr14:99708947:A:G	rs116112284	A	G	A	Sox3.mouse_HMG_2	15	1	-	5.664810991910066	1.8850115744042706	AATCAGTGTCAGTGGTA
chr14	99778141	99778142	chr14:99778142:G:A	rs61316733	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr14	99791929	99791930	chr14:99791930:G:C	rs7161099	G	C	C	Sox3.mouse_HMG_2	5	1	-	1.785208902647682	2.3040026960628497	GGACACTGCTAGTGAGG
chr14	100012934	100012935	chr14:100012935:G:A	rs1190993	G	A	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr14	100416660	100416661	chr14:100416661:C:T	rs190811393	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr14	100607023	100607024	chr14:100607024:T:C	rs117894006	T	C	T	Sox3.mouse_HMG_2	2	1	+	6.322896280710119	-0.04400102581562877	GATCAATTTCAGTAACG
chr14	100803700	100803701	chr14:100803701:A:G	rs34483682	A	G	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr14	100831116	100831117	chr14:100831117:T:C	rs35431412	T	C	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr14	101009368	101009369	chr14:101009369:T:C	rs8181981	T	C	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr14	101381415	101381416	chr14:101381416:G:A	rs28437801	G	A	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr14	101408908	101408909	chr14:101408909:C:T	rs8008159	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr14	101538665	101538666	chr14:101538666:A:G	rs78932025	A	G	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr14	101571562	101571563	chr14:101571563:T:C	rs11849893	T	C	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr14	101909320	101909321	chr14:101909321:T:C	rs1616161	T	C	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr14	101926746	101926747	chr14:101926747:G:A	rs1741144	G	A	G	Sox3.mouse_HMG_2	15	1	+	2.598680751540794	3.032418202802135	TTTCAAAGATAGTGAGA
chr14	101943921	101943922	chr14:101943922:C:A	rs4906168	C	A	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr14	102036129	102036130	chr14:102036130:C:T	rs11622472	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr14	102594624	102594625	chr14:102594625:T:C	rs1957568	T	C	.	Sox3.mouse_HMG_2	6	1	+	3.7062626614895526	-2.683018772888338	AGTCCATGTTAGTGTTT
chr14	103009136	103009137	chr14:103009137:G:A	rs35897010	G	A	G	Sox3.mouse_HMG_2	9	1	-	3.9481662934149093	4.6408188362868685	TGTCACTGCCAGTGAGT
chr14	103052656	103052657	chr14:103052657:T:C	rs75817380	T	C	T	Sox3.mouse_HMG_2	9	1	+	5.728971042382903	5.036318499510943	GATTAATTCTATTCATG
chr14	103098469	103098470	chr14:103098470:A:C	rs59643720	A	C	C	Sox3.mouse_HMG_2	15	1	-	1.4192359609928134	-1.3178911837272125	CATCAAAGTTAGGGGTT
chr14	103098482	103098483	chr14:103098483:A:T	rs17101241	A	T	T	Sox3.mouse_HMG_2	2	1	-	1.4192359609928134	-1.862420814790724	CATCAAAGTTAGGGGTT
chr14	103165484	103165485	chr14:103165485:A:G	rs10141603	A	G	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr14	103209678	103209679	chr14:103209679:T:C	rs182560869	T	C	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr14	103328598	103328599	chr14:103328599:G:A	rs34143771	G	A	g	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr14	103330704	103330705	chr14:103330705:G:A	rs34730207	G	A	g	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr14	103418953	103418954	chr14:103418954:A:G	rs35233301	A	G	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr14	103494288	103494289	chr14:103494289:C:T	rs4900580	C	T	c	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr14	103868579	103868580	chr14:103868580:A:G	rs61995845	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr14	103868594	103868595	chr14:103868595:C:T	rs61995846	C	T	T	Sox3.mouse_HMG_2	7	1	-	4.295864497646212	-2.3329569974418445	AGTCACTGTCAGTGAGT
chr14	103871122	103871123	chr14:103871123:T:C	rs78113926	T	C	T	Sox3.mouse_HMG_2	10	1	-	5.718105317133153	-1.190649462182067	GAGCAATGCCATTGTAA
chr14	104198470	104198471	chr14:104198471:A:G	rs10220498	A	G	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr14	104267643	104267644	chr14:104267644:A:G	rs13313386	A	G	A	Sox3.mouse_HMG_2	0	1	-	8.325399491361832	8.810534505615943	TATCAATTACATTTATG
chr14	104416846	104416847	chr14:104416847:A:T	rs4906458	A	T	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr14	104605477	104605478	chr14:104605478:G:C	rs3803312	G	C	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr14	104724846	104724847	chr14:104724847:C:T	rs895466478	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr14	104724882	104724883	chr14:104724883:T:G	rs74887748	T	G	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr14	104859493	104859494	chr14:104859494:C:T	rs111063723	C	T	-	Sox3.mouse_HMG_2	16	1	-	4.199965936910698	3.9883915104254477	GATGAATGGTGGTGATG
chr14	104859911	104859912	chr14:104859912:C:T	rs145860637	C	T	-	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr14	104894716	104894717	chr14:104894717:A:G	rs199553262	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.944521970142276	-1.7398522293180594	CCACGATGGCATTGATA
chr14	104968154	104968155	chr14:104968155:C:A	rs867158094	C	A	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr14	105290553	105290554	chr14:105290554:A:G	rs11625098	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr14	105888234	105888235	chr14:105888235:T:C	rs2516975	T	C	.	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr14	105888239	105888240	chr14:105888240:T:C	rs34368947	T	C	.	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr14	106230204	106230205	chr14:106230205:G:A	rs58460616	G	A	.	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr14	106301188	106301189	chr14:106301189:G:A	rs11160949	G	A	.	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr14	106539509	106539510	chr14:106539510:A:T	rs7160063	A	T	N	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr14	106865512	106865513	chr14:106865513:C:A	chr14:106865513:C:A	C	A	.	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr15	20258397	20258398	chr15:20258398:C:T	rs8033265	C	T	c	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr15	20263358	20263359	chr15:20263359:T:C	rs2123302	T	C	N	Sox3.mouse_HMG_2	2	1	-	3.372249928483968	1.500032037587614	GGACAATGGGAGTGAAA
chr15	20334659	20334660	chr15:20334660:C:T	rs55714212	C	T	c	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr15	20669170	20669171	chr15:20669171:T:A	rs71468614	T	A	A	Sox3.mouse_HMG_2	16	1	-	4.19543732421549	4.770733440334686	GTTAAATGATATTGGTA
chr15	20669770	20669771	chr15:20669771:A:G	rs7497715	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr15	20669796	20669797	chr15:20669797:A:G	rs7497743	A	G	A	Sox3.mouse_HMG_2	14	1	+	3.1258870994552503	-0.1921791703163515	CTTCAATATTATTTATA
chr15	20672525	20672526	chr15:20672526:A:G	rs10902997	A	G	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr15	21270483	21270484	chr15:21270484:T:G	rs4983767	T	G	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr15	21485250	21485251	chr15:21485251:T:C	rs4779449	T	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr15	22780608	22780609	chr15:22780609:A:G	rs143596530	A	G	a	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr15	22787453	22787454	chr15:22787454:G:T	rs76483819	G	T	g	Sox3.mouse_HMG_2	13	1	-	4.482257412597472	4.817878947338372	GATCACTTGTATTCATT
chr15	22822086	22822087	chr15:22822087:G:T	rs7179251	G	T	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr15	22851673	22851674	chr15:22851674:C:T	rs117894530	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr15	23482507	23482508	chr15:23482508:G:A	rs2345408	G	A	G	Sox3.mouse_HMG_2	7	1	+	4.887366814394948	-1.741454680693107	AGTCAATGTCAGGGAAG
chr15	23485178	23485179	chr15:23485179:T:C	rs2345409	T	C	C	Sox3.mouse_HMG_2	4	1	+	4.401616621584012	4.401616621584012	AAACTATTTTATTGAAT
chr15	23485263	23485264	chr15:23485264:A:G	rs2345410	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr15	24809699	24809700	chr15:24809700:C:T	rs2123682	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr15	25378545	25378546	chr15:25378546:T:C	rs60468744	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr15	25404050	25404051	chr15:25404051:G:A	rs116868056	G	A	G	Sox3.mouse_HMG_2	3	1	-	7.3992767079127075	2.542420832690486	GCTCAATGGTATTAAGT
chr15	25428155	25428156	chr15:25428156:C:T	rs11161175	C	T	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr15	25477171	25477172	chr15:25477172:G:A	rs61999011	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr15	25767040	25767041	chr15:25767041:C:T	rs117865171	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr15	25767046	25767047	chr15:25767047:G:A	rs11854600	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr15	25792774	25792775	chr15:25792775:C:T	rs12442344	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr15	25814349	25814350	chr15:25814350:T:C	rs61991502	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr15	25822438	25822439	chr15:25822439:C:T	rs11630331	C	T	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr15	25831559	25831560	chr15:25831560:A:G	rs74767497	A	G	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr15	26171371	26171372	chr15:26171372:A:G	rs1282807	A	G	G	Sox3.mouse_HMG_2	10	1	+	2.131774821949251	-4.7769799573659695	GAACAATGTCATGGGAC
chr15	26180745	26180746	chr15:26180746:G:A	rs491869	G	A	A	Sox3.mouse_HMG_2	0	1	+	2.07917704616038	0.3826847524577183	GTTCAAATTTGTTGATT
chr15	26186173	26186174	chr15:26186174:G:A	rs566148901	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr15	26318943	26318944	chr15:26318944:C:T	rs8034111	C	T	T	Sox3.mouse_HMG_2	7	1	-	4.068341343380251	-2.5604801517078064	GATTAATGTCAGTAAAG
chr15	26324062	26324063	chr15:26324063:A:G	rs12902370	A	G	A	Sox3.mouse_HMG_2	0	1	-	4.02872542891609	4.513860443170197	TATTAATCATAGTGATT
chr15	26713629	26713630	chr15:26713630:A:G	rs11632969	A	G	G	Sox3.mouse_HMG_2	6	1	-	2.119339609773004	-4.269941824604885	TGTCCATGGCATTCATT
chr15	26888307	26888308	chr15:26888308:G:T	rs80256359	G	T	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr15	26888321	26888322	chr15:26888322:C:A	rs9744196	C	A	C	Sox3.mouse_HMG_2	9	1	+	4.607317679997267	-0.6840110370150939	GAACAATTTCTTTGAGG
chr15	27060553	27060554	chr15:27060554:G:A	rs6606866	G	A	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr15	27388526	27388527	chr15:27388527:A:G	rs62001352	A	G	A	Sox3.mouse_HMG_2	16	1	-	9.12595146846567	7.52295841880522	TATCAATGGTACTGAAT
chr15	27401281	27401282	chr15:27401282:T:A	rs7166711	T	A	T	Sox3.mouse_HMG_2	2	1	+	7.807051085528405	4.525394309744869	CATCAATGTGATTGGAT
chr15	27600994	27600995	chr15:27600995:G:A	rs1551865	G	A	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr15	27977633	27977634	chr15:27977634:G:A	rs11631735	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr15	28265479	28265480	chr15:28265480:A:T	rs150568801	A	T	.	Sox3.mouse_HMG_2	12	1	-	2.687193275443625	-3.3637738624871925	GCTCAGTGGCATTGGGG
chr15	28955487	28955488	chr15:28955488:T:G	rs11857861	T	G	T	Sox3.mouse_HMG_2	15	1	+	10.942732012872183	8.205604868152157	AATCAATTTTAATGATT
chr15	29041172	29041173	chr15:29041173:G:C	rs57844311	G	C	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr15	29158072	29158073	chr15:29158073:T:G	rs8026346	T	G	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr15	29271172	29271173	chr15:29271173:G:A	rs480675	G	A	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr15	29338204	29338205	chr15:29338205:G:A	rs78224356	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr15	29469705	29469706	chr15:29469706:C:T	rs8025311	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr15	29544744	29544745	chr15:29544745:A:C	rs8040300	A	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr15	29544782	29544783	chr15:29544783:C:T	rs11636716	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr15	29636551	29636552	chr15:29636552:A:G	rs7183354	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr15	31076468	31076469	chr15:31076469:G:T	rs2241495	G	T	T	Sox3.mouse_HMG_2	0	1	-	3.234887812920772	1.8430290367422955	CAACAATTTTATTCACC
chr15	31079787	31079788	chr15:31079788:T:G	chr15:31079788:T:G	T	G	T	Sox3.mouse_HMG_2	14	1	-	6.172071712781901	0.13954309519325608	GCTCATTGCTATTGAAG
chr15	31340874	31340875	chr15:31340875:A:C	rs149749886	A	C	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr15	31434075	31434076	chr15:31434076:G:T	rs142172405	G	T	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr15	31434124	31434125	chr15:31434125:A:G	rs10083682	A	G	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr15	31455851	31455852	chr15:31455852:G:T	rs67634762	G	T	G	Sox3.mouse_HMG_2	13	1	+	3.962578983677404	-2.424681055249808	CAACAATGCCCTTGAGA
chr15	31455956	31455957	chr15:31455957:C:A	rs77315429	C	A	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr15	32005968	32005969	chr15:32005969:A:G	rs7178622	A	G	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr15	32685548	32685549	chr15:32685549:T:C	rs56338436	T	C	T	Sox3.mouse_HMG_2	0	1	+	4.01114171735435	4.496276731608459	TATCAATGTTTGTAATA
chr15	32872575	32872576	chr15:32872576:G:A	rs12594394	G	A	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr15	32970535	32970536	chr15:32970536:T:C	rs8034555	T	C	C	Sox3.mouse_HMG_2	5	1	-	7.230315845092731	0.841034410714842	TGACAATGACAGTGAAT
chr15	33356895	33356896	chr15:33356896:G:A	rs11072413	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr15	33606874	33606875	chr15:33606875:A:G	rs10519836	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr15	33742834	33742835	chr15:33742835:C:T	rs4779642	C	T	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr15	34336822	34336823	chr15:34336823:C:T	rs73374490	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr15	34606666	34606667	chr15:34606667:T:A	rs17817896	T	A	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr15	34789149	34789150	chr15:34789150:C:G	rs189725849	C	G	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr15	34920046	34920047	chr15:34920047:G:C	rs367567254	G	C	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr15	35192804	35192805	chr15:35192805:A:G	rs55763113	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr15	35218909	35218910	chr15:35218910:G:A	rs117866038	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr15	35392941	35392942	chr15:35392942:C:G	rs28576618	C	G	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr15	35557367	35557368	chr15:35557368:A:G	rs75881216	A	G	A	Sox3.mouse_HMG_2	6	1	-	2.3712081194935064	-4.018073314884383	TGTCTATGCTATTCATT
chr15	35557701	35557702	chr15:35557702:A:C	rs59006481	A	C	A	Sox3.mouse_HMG_2	15	1	-	1.7494879575094526	-0.9876391872105732	TACCTATGCCAGTGATA
chr15	35557722	35557723	chr15:35557723:T:G	rs73384548	T	G	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr15	35753453	35753454	chr15:35753454:G:C	rs149135772	G	C	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr15	35765341	35765342	chr15:35765342:A:G	rs11856070	A	G	A	Sox3.mouse_HMG_2	2	1	-	7.278273959912337	0.9113766533865866	AATCAATGTTATTTACA
chr15	35792192	35792193	chr15:35792193:T:A	rs1116212	T	A	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr15	35853404	35853405	chr15:35853405:C:A	rs1497805	C	A	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr15	35870564	35870565	chr15:35870565:G:A	rs1497820	G	A	G	Sox3.mouse_HMG_2	7	1	+	1.6338393077872218	-4.994982187300835	GAACATTGGCATTTATT
chr15	35933536	35933537	chr15:35933537:A:C	rs11073131	A	C	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr15	35956777	35956778	chr15:35956778:C:A	rs1397255	C	A	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr15	36106834	36106835	chr15:36106835:A:G	rs12592136	A	G	A	Sox3.mouse_HMG_2	12	1	-	6.944209579743933	0.8932424418131167	AAAGAATGTTAGTGATG
chr15	36109982	36109983	chr15:36109983:G:A	rs11854628	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr15	36208062	36208063	chr15:36208063:C:A	rs17630229	C	A	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr15	36483860	36483861	chr15:36483861:A:G	rs2167992	A	G	G	Sox3.mouse_HMG_2	4	1	+	5.953541314920455	-0.4357401194574347	AAACAGTGATATTGATG
chr15	36785402	36785403	chr15:36785403:T:C	rs9944176	T	C	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr15	36797290	36797291	chr15:36797291:T:C	rs189283064	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr15	36877779	36877780	chr15:36877780:C:A	rs768436384	C	A	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr15	36881743	36881744	chr15:36881744:A:G	rs4451907	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr15	36952084	36952085	chr15:36952085:G:A	rs548208020	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr15	37103129	37103130	chr15:37103130:T:C	rs60211807	T	C	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr15	37861317	37861318	chr15:37861318:C:T	rs8034439	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr15	37880320	37880321	chr15:37880321:T:G	chr15:37880321:T:G	T	G	T	Sox3.mouse_HMG_2	3	1	+	2.5917602820220975	1.398096847355023	GATTAATGACAGTGTCG
chr15	37892325	37892326	chr15:37892326:A:G	rs554237880	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr15	37934078	37934079	chr15:37934079:T:G	rs2937981	T	G	T	Sox3.mouse_HMG_2	8	1	+	6.036530977528379	5.222893044524167	TATTTATTTTATTGATT
chr15	38175531	38175532	chr15:38175532:G:C	rs11855662	G	C	C	Sox3.mouse_HMG_2	4	1	+	2.9363111422762085	2.4175173488610406	GAACGATTTAATTGATT
chr15	38218254	38218255	chr15:38218255:G:C	rs2174008	G	C	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr15	38308629	38308630	chr15:38308630:A:G	rs73398438	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr15	38697568	38697569	chr15:38697569:G:A	rs35024396	G	A	a	Sox3.mouse_HMG_2	11	1	+	3.8784997468977713	-0.6929843814355129	GAGCAAAGATAGTGATG
chr15	38709113	38709114	chr15:38709114:T:C	rs4340305	T	C	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr15	38941805	38941806	chr15:38941806:G:A	rs540762102	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr15	39063658	39063659	chr15:39063659:G:A	rs1368814	G	A	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr15	39075333	39075334	chr15:39075334:A:G	rs12595617	A	G	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr15	39075353	39075354	chr15:39075354:A:G	rs12915961	A	G	A	Sox3.mouse_HMG_2	9	1	-	5.237080825721911	4.544428282849951	CAGCAATGCTAGGGATT
chr15	39079858	39079859	chr15:39079859:C:T	rs12372998	C	T	t	Sox3.mouse_HMG_2	8	1	-	6.2611845922621185	5.0423942075176225	TATAAATGGCAGTGAAA
chr15	39079859	39079860	chr15:39079860:C:T	rs12372999	C	T	t	Sox3.mouse_HMG_2	7	1	-	6.2611845922621185	-0.3676369028259376	TATAAATGGCAGTGAAA
chr15	39145495	39145496	chr15:39145496:C:A	rs275208	C	A	A	Sox3.mouse_HMG_2	15	1	-	2.8169566567802318	5.554083801500257	GCTCAATTATTGTGAGT
chr15	39145511	39145512	chr15:39145512:G:A	rs275207	G	A	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr15	39184935	39184936	chr15:39184936:A:G	rs78740587	A	G	A	Sox3.mouse_HMG_2	7	1	-	9.39882383130161	3.8958935500587972	TGTCAATTTTATTGCTG
chr15	39205791	39205792	chr15:39205792:A:G	rs17684646	A	G	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr15	39700118	39700119	chr15:39700119:T:C	rs2254947	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr15	39771938	39771939	chr15:39771939:C:G	rs1166722	C	G	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr15	39778313	39778314	chr15:39778314:G:A	rs12439384	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr15	39778699	39778700	chr15:39778700:G:A	rs1491624	G	A	G	Sox3.mouse_HMG_2	15	1	+	5.9447442207628685	6.3784816720242095	CCTTAATTATATTGAGT
chr15	39819956	39819957	chr15:39819957:A:G	rs676455	A	G	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr15	39970357	39970358	chr15:39970358:A:G	rs10851392	A	G	G	Sox3.mouse_HMG_2	8	1	-	8.732018651878308	7.47759668572264	CATAAATGTTATTGACT
chr15	40006491	40006492	chr15:40006492:G:A	rs73388599	G	A	G	Sox3.mouse_HMG_2	7	1	+	5.682266519394604	-0.9465549756934528	CATCAGTGGTAATGATA
chr15	40012205	40012206	chr15:40012206:A:C	rs12903784	A	C	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr15	40084890	40084891	chr15:40084891:T:C	rs7183977	T	C	t	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr15	40126555	40126556	chr15:40126556:T:C	rs116432681	T	C	-	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr15	40319659	40319660	chr15:40319660:T:C	rs11070264	T	C	T	Sox3.mouse_HMG_2	15	1	+	3.672653117617253	-0.10714629988854281	AATCACTGGTATAGATA
chr15	40321998	40321999	chr15:40321999:A:G	rs2118961	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.3982638039030433	-3.286110395557293	TTTCAAGGATATTGGTA
chr15	40755859	40755860	chr15:40755860:G:A	rs7175361	G	A	G	Sox3.mouse_HMG_2	13	1	+	7.188000520172255	1.136362015985943	TAACAATTTTATTGTGA
chr15	40811541	40811542	chr15:40811542:G:A	rs690269	G	A	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr15	41380503	41380504	chr15:41380504:A:C	rs76600371	A	C	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr15	41498261	41498262	chr15:41498262:C:T	rs1757460	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr15	41935242	41935243	chr15:41935243:T:C	rs2114477	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr15	41978531	41978532	chr15:41978532:C:T	rs4924592	C	T	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr15	42141510	42141511	chr15:42141511:G:A	rs114602851	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr15	42499259	42499260	chr15:42499260:C:T	rs2595939	C	T	-	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr15	42704410	42704411	chr15:42704411:T:C	rs147707603	T	C	T	Sox3.mouse_HMG_2	12	1	+	4.567714428127682	-1.4832527098031332	CCTTAATGTTCTTGATG
chr15	43267761	43267762	chr15:43267762:T:A	rs505249	T	A	A	Sox3.mouse_HMG_2	16	1	-	2.0066923759016095	2.581988492020806	GGACAATGCTGGTGAAA
chr15	44710502	44710503	chr15:44710503:T:C	rs78335029	T	C	T	Sox3.mouse_HMG_2	14	1	-	6.433389047845371	3.11532277807377	CGGCAATTTTAGTGAGA
chr15	44710534	44710535	chr15:44710535:T:C	rs3759876	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr15	44783988	44783989	chr15:44783989:G:C	rs555985866	G	C	N	Sox3.mouse_HMG_2	8	1	-	3.843735536125163	4.28451956927662	GGTAAATTCCATTGGTA
chr15	44783989	44783990	chr15:44783990:A:G	rs75987852	A	G	N	Sox3.mouse_HMG_2	7	1	-	3.843735536125163	-1.6591947451176494	GGTAAATTCCATTGGTA
chr15	44784015	44784016	chr15:44784016:T:C	rs1669833	T	C	N	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr15	45200540	45200541	chr15:45200541:C:A	chr15:45200541:C:A	C	A	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr15	45241775	45241776	chr15:45241776:T:C	rs28897155	T	C	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr15	45551816	45551817	chr15:45551817:C:A	rs186909624	C	A	C	Sox3.mouse_HMG_2	1	1	+	4.896863915643398	7.612305451987338	GCTCCATGGTATTGTTG
chr15	45862137	45862138	chr15:45862138:G:C	rs117437423	G	C	G	Sox3.mouse_HMG_2	9	1	-	3.0337466627387153	-2.2575820542736444	CCTCAATTACATTGCCT
chr15	46015275	46015276	chr15:46015276:A:G	rs12908219	A	G	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr15	46127565	46127566	chr15:46127566:A:G	rs763134246	A	G	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr15	46292254	46292255	chr15:46292255:C:A	rs12592819	C	A	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr15	47140301	47140302	chr15:47140302:C:T	rs28417512	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr15	47212544	47212545	chr15:47212545:T:C	rs12442330	T	C	t	Sox3.mouse_HMG_2	15	1	+	4.1782128539859515	0.3984134364801563	CTACAATTTTAGTTATG
chr15	47293973	47293974	chr15:47293974:C:T	rs78722540	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr15	47394392	47394393	chr15:47394393:C:T	rs11070582	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr15	47529439	47529440	chr15:47529440:A:G	rs16959659	A	G	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr15	47843366	47843367	chr15:47843367:C:T	rs785016	C	T	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr15	48553524	48553525	chr15:48553525:G:A	rs11857382	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr15	48963365	48963366	chr15:48963366:C:A	rs181281946	C	A	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr15	49415447	49415448	chr15:49415448:T:A	rs11639423	T	A	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr15	49493593	49493594	chr15:49493594:A:G	rs34918968	A	G	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr15	49620570	49620571	chr15:49620571:C:T	rs13329455	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr15	49689778	49689779	chr15:49689779:T:C	rs12905627	T	C	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr15	49826927	49826928	chr15:49826928:C:T	rs4393520	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr15	49927824	49927825	chr15:49927825:T:C	rs7181616	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr15	50077177	50077178	chr15:50077178:A:G	rs41362650	A	G	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr15	51076039	51076040	chr15:51076040:T:C	rs17522120	T	C	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr15	51204071	51204072	chr15:51204072:C:T	rs146169068	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr15	51257401	51257402	chr15:51257402:G:A	rs1008805	G	A	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr15	51315131	51315132	chr15:51315132:C:G	rs144432092	C	G	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr15	51379497	51379498	chr15:51379498:T:C	chr15:51379498:T:C	T	C	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr15	51672667	51672668	chr15:51672668:T:C	rs1378892	T	C	C	Sox3.mouse_HMG_2	8	1	+	8.173965725109417	6.919543758953749	GAGCAACGTTATTGATT
chr15	51835032	51835033	chr15:51835033:T:C	rs6493526	T	C	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr15	52100857	52100858	chr15:52100858:G:C	rs74013702	G	C	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr15	52206162	52206163	chr15:52206163:G:A	rs4776016	G	A	A	Sox3.mouse_HMG_2	9	1	-	2.991669285741845	3.684321828613805	GGACAATGACAGTGTGA
chr15	52499644	52499645	chr15:52499645:T:G	rs11858875	T	G	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr15	53271716	53271717	chr15:53271717:T:C	rs12912947	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr15	53315251	53315252	chr15:53315252:T:C	rs10152269	T	C	C	Sox3.mouse_HMG_2	15	1	+	4.605823993013039	0.8260245755072427	CAGCAATTCTTTTGATG
chr15	53472488	53472489	chr15:53472489:T:A	rs74015669	T	A	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr15	53521861	53521862	chr15:53521862:T:C	rs540546	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr15	53681537	53681538	chr15:53681538:C:T	rs79915263	C	T	C	Sox3.mouse_HMG_2	13	1	-	3.0739675688967605	-2.9776709352895505	AATCAGTTTTAGCGATT
chr15	53759221	53759222	chr15:53759222:T:C	rs7167726	T	C	T	Sox3.mouse_HMG_2	1	1	-	5.650622404469855	3.6442344624503993	AATTAATTTTATTTATT
chr15	53808688	53808689	chr15:53808689:T:C	rs731380	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr15	53808701	53808702	chr15:53808702:G:A	rs731381	G	A	A	Sox3.mouse_HMG_2	1	1	+	3.426047855646044	5.432435797665501	CGGCAACGTCAGTGATG
chr15	53913011	53913012	chr15:53913012:T:C	rs2711623	T	C	T	Sox3.mouse_HMG_2	15	1	-	1.9334106580040076	1.4996732067426664	GAGCAATGTCAATGGAG
chr15	53980946	53980947	chr15:53980947:G:C	rs12101828	G	C	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr15	54150825	54150826	chr15:54150826:T:G	rs59921827	T	G	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr15	54168309	54168310	chr15:54168310:C:T	rs11855361	C	T	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr15	54256617	54256618	chr15:54256618:T:C	rs12908409	T	C	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr15	54605275	54605276	chr15:54605276:A:C	chr15:54605276:A:C	A	C	g	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr15	54605275	54605276	chr15:54605276:A:G	rs12708436	A	G	g	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr15	55170345	55170346	chr15:55170346:T:C	rs7172575	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr15	55170364	55170365	chr15:55170365:A:C	rs73405895	A	C	C	Sox3.mouse_HMG_2	16	1	-	6.2751258844527875	5.911404194818842	TAAGAATTGTAGTGATT
chr15	55512923	55512924	chr15:55512924:G:A	rs4774777	G	A	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr15	55616004	55616005	chr15:55616005:T:C	rs491014	T	C	T	Sox3.mouse_HMG_2	2	1	-	2.960828604646752	1.088610713750397	GAACAATGACAGAGGTT
chr15	55912137	55912138	chr15:55912138:A:G	rs140022173	A	G	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr15	55916336	55916337	chr15:55916337:G:A	rs12440230	G	A	G	Sox3.mouse_HMG_2	6	1	-	5.675172097167193	12.064453531545084	CAGCAACGGTAGTGATT
chr15	55950987	55950988	chr15:55950988:G:A	rs78248035	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr15	56052432	56052433	chr15:56052433:C:G	rs10518832	C	G	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr15	56093669	56093670	chr15:56093670:A:G	rs33984059	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr15	56356974	56356975	chr15:56356975:G:C	rs2725866	G	C	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr15	56428964	56428965	chr15:56428965:T:A	rs80310410	T	A	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr15	56449979	56449980	chr15:56449980:C:A	rs35978617	C	A	C	Sox3.mouse_HMG_2	15	1	+	4.510156646684851	5.986566370731961	CGTCAATTTTATTCACC
chr15	56586370	56586371	chr15:56586371:A:T	rs4309345	A	T	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr15	56656328	56656329	chr15:56656329:C:T	rs11630168	C	T	C	Sox3.mouse_HMG_2	13	1	-	4.6106878602089685	-1.440950643977343	GTTCAATTTCTGTGAAT
chr15	56760070	56760071	chr15:56760071:G:T	rs1477475	G	T	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr15	56892996	56892997	chr15:56892997:A:G	rs190185397	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr15	56919444	56919445	chr15:56919445:A:G	rs28701090	A	G	A	Sox3.mouse_HMG_2	4	1	+	3.7682675246080497	-2.621013909769839	TGTCAGTTCTATTGTTG
chr15	57090560	57090561	chr15:57090561:C:T	rs116915857	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr15	57156256	57156257	chr15:57156257:G:A	rs2593211	G	A	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr15	57220804	57220805	chr15:57220805:T:A	rs2591062	T	A	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr15	57648063	57648064	chr15:57648064:T:C	rs2042698	T	C	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr15	57665765	57665766	chr15:57665766:G:A	rs10162772	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr15	57750246	57750247	chr15:57750247:G:A	rs376532746	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr15	58058697	58058698	chr15:58058698:C:G	rs12914603	C	G	G	Sox3.mouse_HMG_2	3	1	+	3.1307611217551665	-2.919758188134129	CCACAGTTGTAGTGATA
chr15	58079483	58079484	chr15:58079484:G:A	rs2704188	G	A	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr15	58222927	58222928	chr15:58222928:A:G	rs1385099823	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr15	58399948	58399949	chr15:58399949:G:T	rs35128881	G	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr15	58499905	58499906	chr15:58499906:T:C	rs57783456	T	C	C	Sox3.mouse_HMG_2	16	1	+	3.9812023325896884	2.3782092829292374	TCACAATGCCAGTGGAT
chr15	58535996	58535997	chr15:58535997:A:G	rs148076190	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr15	58546464	58546465	chr15:58546465:G:C	rs7181352	G	C	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr15	58669148	58669149	chr15:58669149:T:C	rs8035960	T	C	t	Sox3.mouse_HMG_2	5	1	-	3.033910457521675	-3.3553709768562143	GTTCTATGTCATTTATT
chr15	58857200	58857201	chr15:58857201:G:A	rs1054991	G	A	G	Sox3.mouse_HMG_2	8	1	+	6.152044806500254	4.933254421755756	GTTCAATTGTATTAAAA
chr15	59125389	59125390	chr15:59125390:C:T	rs28383569	C	T	C	Sox3.mouse_HMG_2	9	1	+	2.2885516271478976	2.9812041700198564	TCTCAAATGCATTGTTG
chr15	59170597	59170598	chr15:59170598:C:A	rs12438396	C	A	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr15	59170631	59170632	chr15:59170632:T:C	rs528312257	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr15	59229815	59229816	chr15:59229816:T:C	rs6494080	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.3471715386291487	-4.042109895748739	CATCTATGACAGTAATT
chr15	59704807	59704808	chr15:59704808:A:G	rs17191002	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr15	59821609	59821610	chr15:59821610:A:T	rs2965332	A	T	T	Sox3.mouse_HMG_2	2	1	-	3.9763010868859845	0.6946443111024474	AGTTAATTTTATTGGGT
chr15	59893032	59893033	chr15:59893033:C:T	rs11071494	C	T	C	Sox3.mouse_HMG_2	16	1	-	6.860995676638452	6.6494212501532015	GGTCAATTCCAGTGCTG
chr15	60218782	60218783	chr15:60218783:T:G	rs143857439	T	G	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr15	60395644	60395645	chr15:60395645:A:G	rs2100432	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr15	60486814	60486815	chr15:60486815:C:T	rs36104504	C	T	c	Sox3.mouse_HMG_2	15	1	+	4.46770903631309	8.247508453818885	ATTCAATTTTAATGACT
chr15	60606269	60606270	chr15:60606270:A:G	rs17303062	A	G	A	Sox3.mouse_HMG_2	10	1	+	3.4760461716479116	-3.4327086076673097	AGTAAATGCTATTGTTG
chr15	60844824	60844825	chr15:60844825:T:C	rs752879541	T	C	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr15	60861351	60861352	chr15:60861352:T:C	rs10519085	T	C	T	Sox3.mouse_HMG_2	4	1	-	8.244783587319157	1.8555021529412679	TATCAATGTAAGTGGTT
chr15	60932099	60932100	chr15:60932100:A:C	rs79995443	A	C	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr15	61155757	61155758	chr15:61155758:T:C	rs142237644	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr15	61479768	61479769	chr15:61479769:G:A	rs34601722	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr15	61480351	61480352	chr15:61480352:T:G	rs56810547	T	G	T	Sox3.mouse_HMG_2	5	1	-	5.505634300702318	-1.4024409270907394	CAACAATGCTAGTCATC
chr15	61606422	61606423	chr15:61606423:A:G	rs8035133	A	G	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr15	61780390	61780391	chr15:61780391:T:C	rs78286627	T	C	T	Sox3.mouse_HMG_2	11	1	+	2.806956448209214	-3.877417751251122	GAACAAATCTATTGAGC
chr15	61802644	61802645	chr15:61802645:G:A	rs11631621	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr15	61821719	61821720	chr15:61821720:T:C	rs11853774	T	C	T	Sox3.mouse_HMG_2	12	1	+	4.08606948492433	-1.9648976530064866	ATTCAATGTCAATGTTA
chr15	61840321	61840322	chr15:61840322:C:G	rs748667	C	G	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr15	61955520	61955521	chr15:61955521:A:T	rs8027751	A	T	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr15	62523045	62523046	chr15:62523046:G:C	rs7182050	G	C	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr15	62545419	62545420	chr15:62545420:G:T	rs736978	G	T	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr15	62638354	62638355	chr15:62638355:A:G	rs116525722	A	G	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr15	62901863	62901864	chr15:62901864:G:A	rs8042820	G	A	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr15	62931702	62931703	chr15:62931703:T:G	rs73432279	T	G	T	Sox3.mouse_HMG_2	15	1	+	4.66480862907473	1.9276814843547048	CATCAATTCTAATAATG
chr15	62950083	62950084	chr15:62950084:C:T	rs923424	C	T	T	Sox3.mouse_HMG_2	11	1	-	2.002143684860172	-2.5693404434731124	GCAAAATTCCAGTGATG
chr15	63195221	63195222	chr15:63195222:C:G	rs753891001	C	G	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr15	63251955	63251956	chr15:63251956:A:G	rs111247008	A	G	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr15	63346816	63346817	chr15:63346817:A:G	rs2270764	A	G	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr15	63488430	63488431	chr15:63488431:T:C	rs10519212	T	C	T	Sox3.mouse_HMG_2	12	1	+	3.625843089064811	-2.4251240488660053	ACACATTTTTATTGATG
chr15	63551703	63551704	chr15:63551704:G:A	rs75569079	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr15	63834838	63834839	chr15:63834839:C:G	rs9972484	C	G	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr15	63834844	63834845	chr15:63834845:T:C	rs6494438	T	C	C	Sox3.mouse_HMG_2	14	1	-	3.847858286406342	0.5297920166347411	GGTCAGTTTAATTGATG
chr15	63914096	63914097	chr15:63914097:C:G	rs56980062	C	G	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr15	63914116	63914117	chr15:63914117:G:A	rs56660009	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr15	64224828	64224829	chr15:64224829:C:T	rs28550147	C	T	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr15	64224852	64224853	chr15:64224853:C:T	rs114407065	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr15	64232780	64232781	chr15:64232781:G:A	rs8033972	G	A	a	Sox3.mouse_HMG_2	13	1	+	3.047938362170446	-3.003700142015866	ACTCAATGCCAGAGAAA
chr15	64248375	64248376	chr15:64248376:A:G	rs150730913	A	G	A	Sox3.mouse_HMG_2	9	1	-	5.933521367557649	5.240868824685691	TACCAATGTTATTAATA
chr15	64466566	64466567	chr15:64466567:A:G	rs908534126	A	G	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr15	64836070	64836071	chr15:64836071:C:A	rs566065433	C	A	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr15	65218285	65218286	chr15:65218286:T:G	rs11071830	T	G	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr15	65296644	65296645	chr15:65296645:G:A	rs148273100	G	A	G	Sox3.mouse_HMG_2	0	1	-	2.5853726256017477	2.100237611347641	CCTCGATGGTCTTGATT
chr15	65304944	65304945	chr15:65304945:C:T	rs75511586	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr15	65304945	65304946	chr15:65304946:A:G	rs525725	A	G	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr15	65304964	65304965	chr15:65304965:C:G	rs140673409	C	G	C	Sox3.mouse_HMG_2	0	1	+	3.219970578519608	3.5246040960437965	CTTCAGTGTCATTAATG
chr15	65304987	65304988	chr15:65304988:A:G	rs145872323	A	G	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr15	65326181	65326182	chr15:65326182:C:T	rs149738821	C	T	C	Sox3.mouse_HMG_2	0	1	-	2.5070300327498822	0.8105377390472203	GCTTAATGGCAGTTATG
chr15	65326193	65326194	chr15:65326194:C:A	rs7162046	C	A	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr15	65326194	65326195	chr15:65326195:G:A	rs145629976	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr15	65576153	65576154	chr15:65576154:T:C	rs541812485	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr15	65596020	65596021	chr15:65596021:G:T	rs7165102	G	T	T	Sox3.mouse_HMG_2	13	1	+	5.215723816243274	-1.1715362226839359	GATAACTGTCATTGATT
chr15	65655285	65655286	chr15:65655286:T:C	chr15:65655286:T:C	T	C	T	Sox3.mouse_HMG_2	14	1	+	2.4042918898987327	0.39114479605873304	GGACAATGCTATTTTTG
chr15	65798346	65798347	chr15:65798347:C:A	rs2727096	C	A	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr15	65984015	65984016	chr15:65984016:C:T	rs11639031	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr15	66089746	66089747	chr15:66089747:A:G	rs11639467	A	G	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr15	66115344	66115345	chr15:66115345:A:G	rs12438373	A	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr15	66180703	66180704	chr15:66180704:T:C	rs11858700	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.340748277881185	-1.34362592157915	TTTCCATTCTATTGATC
chr15	66239592	66239593	chr15:66239593:A:G	rs12324491	A	G	G	Sox3.mouse_HMG_2	9	1	-	0.5662012220248117	-0.12645132084714722	GACCACTGGTAGTGGTG
chr15	66438946	66438947	chr15:66438947:G:C	rs8036023	G	C	G	Sox3.mouse_HMG_2	5	1	+	4.763688662556522	4.244894869141354	AGTCAGTGGTAGTGAAG
chr15	66503598	66503599	chr15:66503599:C:T	rs28673176	C	T	C	Sox3.mouse_HMG_2	13	1	-	5.271808951802215	-0.7798295523840973	ATTTAATGGTATTGTTG
chr15	66742579	66742580	chr15:66742580:A:G	rs755452	A	G	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr15	66776243	66776244	chr15:66776244:A:G	rs12592142	A	G	G	Sox3.mouse_HMG_2	10	1	+	1.5395844013404152	-5.369170377974806	CTTCCATGGCAGTGACC
chr15	66900941	66900942	chr15:66900942:G:A	rs3865016	G	A	G	Sox3.mouse_HMG_2	0	1	-	3.270975751864823	2.785840737610714	CGGCATTGTCAGTGATT
chr15	67133235	67133236	chr15:67133236:T:A	rs10163132	T	A	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr15	67182744	67182745	chr15:67182745:C:T	rs10152566	C	T	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr15	67461353	67461354	chr15:67461354:C:T	rs8025163	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr15	67565203	67565204	chr15:67565204:A:G	rs7182417	A	G	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr15	67808284	67808285	chr15:67808285:C:T	rs1871307	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr15	68151329	68151330	chr15:68151330:C:T	rs28618219	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr15	68184233	68184234	chr15:68184234:G:A	rs117483368	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr15	68277603	68277604	chr15:68277604:G:A	rs78238174	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr15	68313364	68313365	chr15:68313365:T:C	rs7174916	T	C	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr15	68442582	68442583	chr15:68442583:A:C	rs12915128	A	C	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr15	68776430	68776431	chr15:68776431:A:G	chr15:68776431:A:G	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.1048710946694156	-4.284410339708473	GATCAATGTCAGATAGG
chr15	68786003	68786004	chr15:68786004:A:T	rs139293860	A	T	A	Sox3.mouse_HMG_2	2	1	-	5.098001294263377	1.8163445184798397	CATCGATGGCATTGGGG
chr15	68786006	68786007	chr15:68786007:G:A	rs75960637	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr15	68907923	68907924	chr15:68907924:C:T	rs748681	C	T	C	Sox3.mouse_HMG_2	13	1	-	4.623727860644271	-1.4279106435420406	CATCTATGCTATCGATA
chr15	69085205	69085206	chr15:69085206:T:C	rs311898	T	C	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr15	69194701	69194702	chr15:69194702:G:A	rs8042958	G	A	g	Sox3.mouse_HMG_2	16	1	-	2.851017165802027	4.454010215462477	GATCAATGTTTTAGAAC
chr15	69238118	69238119	chr15:69238119:A:G	rs1503287	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.667532644257415	-1.7217487901204742	TTTCAATGCTAGAGAAA
chr15	69751657	69751658	chr15:69751658:C:T	rs72745817	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr15	69766370	69766371	chr15:69766371:T:C	rs12440834	T	C	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr15	69784917	69784918	chr15:69784918:T:C	rs1470833	T	C	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr15	69853072	69853073	chr15:69853073:C:G	rs305007	C	G	C	Sox3.mouse_HMG_2	0	1	-	1.9320684064217597	1.6274348888975718	GAACAGTGGCATTGCTA
chr15	70045308	70045309	chr15:70045309:T:C	rs56122123	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr15	70046097	70046098	chr15:70046098:A:G	rs149835428	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr15	70102029	70102030	chr15:70102030:A:G	rs141766678	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr15	70116613	70116614	chr15:70116614:C:T	rs17759653	C	T	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr15	70257292	70257293	chr15:70257293:C:A	rs34508749	C	A	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr15	70437850	70437851	chr15:70437851:G:A	rs139662466	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr15	70494387	70494388	chr15:70494388:G:A	rs56179949	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr15	70524301	70524302	chr15:70524302:G:T	rs57962183	G	T	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr15	70524302	70524303	chr15:70524303:C:T	rs4777294	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr15	70547023	70547024	chr15:70547024:C:T	rs72755440	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr15	70607837	70607838	chr15:70607838:T:G	rs35724076	T	G	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr15	70607853	70607854	chr15:70607854:A:G	rs7183176	A	G	A	Sox3.mouse_HMG_2	1	1	+	2.5605313850698597	0.5541434430504024	CATGAAAGTTATTGGTA
chr15	70614184	70614185	chr15:70614185:C:T	rs146108624	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr15	70741673	70741674	chr15:70741674:T:C	rs16954772	T	C	c	Sox3.mouse_HMG_2	15	1	+	4.33346936102913	0.5536699435233348	AATCAATGTTATTACTC
chr15	70767792	70767793	chr15:70767793:C:G	rs74021858	C	G	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr15	70775245	70775246	chr15:70775246:T:C	rs7162623	T	C	C	Sox3.mouse_HMG_2	2	1	+	5.742187918268442	-0.6247093882573036	CGTCAATTTCAATGGTA
chr15	72201054	72201055	chr15:72201055:C:T	rs78020492	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr15	72226676	72226677	chr15:72226677:T:C	rs8192373	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr15	72588332	72588333	chr15:72588333:C:T	rs17753089	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr15	72857994	72857995	chr15:72857995:T:G	rs12442394	T	G	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr15	73331595	73331596	chr15:73331596:G:A	rs569532	G	A	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr15	73400689	73400690	chr15:73400690:T:C	rs8039510	T	C	C	Sox3.mouse_HMG_2	12	1	+	2.573072778981392	-3.4778943589494236	TTTCAAGGTTATTCATG
chr15	73767736	73767737	chr15:73767737:T:A	rs17187323	T	A	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr15	74007528	74007529	chr15:74007529:A:G	rs10162627	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.989020332404822	-3.6953538670555135	TATTTATGGCATTGAAG
chr15	74504719	74504720	chr15:74504720:G:A	rs6495109	G	A	A	Sox3.mouse_HMG_2	13	1	+	1.4209706350580598	-4.630667869128252	AGTCATTCTCATTGATG
chr15	74638060	74638061	chr15:74638061:A:G	rs75388839	A	G	A	Sox3.mouse_HMG_2	15	1	-	3.6618152823030363	-0.11798413520275937	CGGCAATGGTAGTGCTG
chr15	74844352	74844353	chr15:74844353:T:C	rs12487	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.566345933215916	-4.8229355011619734	GTACAATGCCGTTGGTT
chr15	75051224	75051225	chr15:75051225:G:A	rs755868762	G	A	g	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr15	75097955	75097956	chr15:75097956:T:C	rs71401675	T	C	T	Sox3.mouse_HMG_2	1	1	-	3.886043400640218	1.8796554586207617	AATGAATGATATTAATT
chr15	75106198	75106199	chr15:75106199:G:A	rs76707738	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr15	75629294	75629295	chr15:75629295:C:A	rs4886722	C	A	c	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr15	75667161	75667162	chr15:75667162:A:C	chr15:75667162:A:C	A	C	A	Sox3.mouse_HMG_2	0	1	-	3.8508329931298073	4.640601524908103	TTTCAATGCCAGGGAAG
chr15	76398264	76398265	chr15:76398265:G:A	rs12907805	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr15	76519974	76519975	chr15:76519975:T:C	rs12441247	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr15	76576759	76576760	chr15:76576760:C:T	rs927925984	C	T	C	Sox3.mouse_HMG_2	9	1	+	1.131506165532614	1.8241587084045736	GCACAGTGGCAGTGAGA
chr15	76576771	76576772	chr15:76576772:G:A	rs938586930	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr15	77145554	77145555	chr15:77145555:T:C	rs12917081	T	C	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr15	77574905	77574906	chr15:77574906:C:A	rs78891111	C	A	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr15	77985843	77985844	chr15:77985844:A:G	rs12372950	A	G	A	Sox3.mouse_HMG_2	5	1	+	1.1196544397083603	-5.2696269946695296	GGGCAACGCCATTGAGG
chr15	78105803	78105804	chr15:78105804:G:A	rs10456	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr15	78215275	78215276	chr15:78215276:G:A	rs118042195	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr15	78267594	78267595	chr15:78267595:T:C	rs12442418	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr15	78358872	78358873	chr15:78358873:G:A	rs4887042	G	A	A	Sox3.mouse_HMG_2	13	1	+	6.79766766640473	0.7460291622184185	GAAAAATGTTATTGAGT
chr15	78358892	78358893	chr15:78358893:C:T	rs4887043	C	T	T	Sox3.mouse_HMG_2	13	1	-	5.792795846240324	-0.2588426579459871	CAACAATTTTTTTGAAT
chr15	78487041	78487042	chr15:78487042:C:T	rs12904234	C	T	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr15	78599284	78599285	chr15:78599285:G:A	rs12910984	G	A	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr15	78740729	78740730	chr15:78740730:A:G	rs113991567	A	G	N	Sox3.mouse_HMG_2	1	1	+	3.0291987966858627	1.0228108546664056	GACCACTGATAGTGATT
chr15	78860676	78860677	chr15:78860677:C:G	rs188638152	C	G	C	Sox3.mouse_HMG_2	6	1	+	4.777408259660772	4.258614466245606	CATCAACGGTAGTAATT
chr15	78876922	78876923	chr15:78876923:T:C	rs75888439	T	C	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr15	79012127	79012128	chr15:79012128:G:A	rs8025124	G	A	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr15	79096950	79096951	chr15:79096951:C:T	rs78496982	C	T	C	Sox3.mouse_HMG_2	16	1	-	5.821749067171335	5.610174640686084	TAACAATTCCATTTATG
chr15	79340230	79340231	chr15:79340231:T:C	rs186806710	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr15	79501832	79501833	chr15:79501833:A:G	rs4371114	A	G	G	Sox3.mouse_HMG_2	4	1	+	1.6041091906590395	-4.7851722437188515	CATCAAAGCTCTTGAGT
chr15	79547568	79547569	chr15:79547569:C:T	rs7181421	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr15	79896059	79896060	chr15:79896060:T:C	rs75644753	T	C	.	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr15	79968529	79968530	chr15:79968530:G:A	rs67760360	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr15	80035782	80035783	chr15:80035783:G:A	rs881481	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr15	80172326	80172327	chr15:80172327:A:G	rs7180031	A	G	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr15	80200266	80200267	chr15:80200267:C:T	rs75884791	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr15	80200269	80200270	chr15:80200270:A:G	rs561661246	A	G	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr15	80484251	80484252	chr15:80484252:A:G	rs61144989	A	G	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr15	80811445	80811446	chr15:80811446:A:G	rs73497055	A	G	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr15	80867920	80867921	chr15:80867921:G:A	rs4145805	G	A	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr15	81000242	81000243	chr15:81000243:A:G	rs144166198	A	G	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr15	81089646	81089647	chr15:81089647:A:G	rs868954	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.750216010620216	-1.6390654237576718	AGTCAATGCTTTTGAGG
chr15	81184646	81184647	chr15:81184647:C:T	rs1509557	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr15	81304725	81304726	chr15:81304726:T:C	rs11631296	T	C	T	Sox3.mouse_HMG_2	10	1	-	2.389679527568473	-4.519075251746748	CCTCAATGCTAGAGGAT
chr15	81318560	81318561	chr15:81318561:T:C	rs4617815	T	C	C	Sox3.mouse_HMG_2	11	1	+	2.4366690432014826	-4.247705156258853	GGTCACTGCCATTGGGG
chr15	81335386	81335387	chr15:81335387:A:G	rs61112061	A	G	A	Sox3.mouse_HMG_2	5	1	+	8.579977502340695	2.1906960679628047	GGACAATGCTATTGTTA
chr15	81335393	81335394	chr15:81335394:T:C	rs116750573	T	C	T	Sox3.mouse_HMG_2	12	1	+	8.579977502340695	2.5290103644098774	GGACAATGCTATTGTTA
chr15	81338447	81338448	chr15:81338448:C:T	rs140831072	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr15	81401428	81401429	chr15:81401429:G:A	rs115681804	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr15	81724276	81724277	chr15:81724277:A:G	rs16973084	A	G	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr15	81930865	81930866	chr15:81930866:C:G	rs12437922	C	G	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr15	81954919	81954920	chr15:81954920:A:C	rs17259508	A	C	A	Sox3.mouse_HMG_2	4	1	+	2.2728721486750096	-4.635203079118049	GATGAAGTTCATTGAAG
chr15	82083020	82083021	chr15:82083021:T:C	rs76698881	T	C	T	Sox3.mouse_HMG_2	8	1	+	7.400040604774766	6.145618638619096	GTTGAATGTCATTGAAA
chr15	82085533	82085534	chr15:82085534:A:G	rs2665089	A	G	G	Sox3.mouse_HMG_2	6	1	+	6.609810684244926	6.609810684244926	GATCAAAGGCAGTGAGA
chr15	82095609	82095610	chr15:82095610:G:C	rs1969090	G	C	C	Sox3.mouse_HMG_2	14	1	-	7.539993180730937	10.25445552854798	TAACAATGTCAGTGCTT
chr15	82133523	82133524	chr15:82133524:A:G	rs66904072	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr15	82136255	82136256	chr15:82136256:C:A	rs77541858	C	A	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr15	82179984	82179985	chr15:82179985:C:T	rs8041868	C	T	T	Sox3.mouse_HMG_2	11	1	-	3.651781734236201	-0.9197023940970845	AGTCAATGTTAGTTTTA
chr15	82391613	82391614	chr15:82391614:C:T	rs35884609	C	T	N	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr15	83286783	83286784	chr15:83286784:A:G	rs55893521	A	G	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr15	83435455	83435456	chr15:83435456:G:A	rs185152378	G	A	G	Sox3.mouse_HMG_2	11	1	+	3.981459784844294	-0.5900243434889911	GAACAGTGCCAGTGAGT
chr15	83517135	83517136	chr15:83517136:G:A	rs11636510	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr15	83733444	83733445	chr15:83733445:A:G	rs10162825	A	G	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr15	83923268	83923269	chr15:83923269:A:T	rs147966746	A	T	A	Sox3.mouse_HMG_2	11	1	-	2.6114418264744566	-3.3405644792726523	CCTCCATTTTATTAATT
chr15	83978229	83978230	chr15:83978230:T:C	rs881984	T	C	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr15	84630409	84630410	chr15:84630410:A:G	rs73449310	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr15	84714367	84714368	chr15:84714368:G:A	rs34900908	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr15	84853035	84853036	chr15:84853036:T:G	chr15:84853036:T:G	T	G	T	Sox3.mouse_HMG_2	4	1	-	5.048766348342385	-1.859308879450673	CCTCAGTTCTATTGAAA
chr15	84853039	84853040	chr15:84853040:G:C	chr15:84853040:G:C	G	C	G	Sox3.mouse_HMG_2	0	1	-	5.048766348342385	5.353399865866573	CCTCAGTTCTATTGAAA
chr15	84891783	84891784	chr15:84891784:A:C	rs141181635	A	C	A	Sox3.mouse_HMG_2	4	1	+	2.4180462664204043	-4.490028961372654	GATCAATTTTTATGAGA
chr15	84905253	84905254	chr15:84905254:C:A	rs17536553	C	A	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr15	84905270	84905271	chr15:84905271:A:G	rs8033895	A	G	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr15	84950084	84950085	chr15:84950085:C:A	rs896369	C	A	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr15	85004584	85004585	chr15:85004585:A:G	rs2122858	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr15	85094682	85094683	chr15:85094683:T:C	rs55699332	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr15	85096227	85096228	chr15:85096228:C:T	rs905600	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr15	85354590	85354591	chr15:85354591:T:C	rs72748866	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr15	85354623	85354624	chr15:85354624:C:T	rs41465044	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr15	85379357	85379358	chr15:85379358:G:C	rs7496211	G	C	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr15	85379384	85379385	chr15:85379385:T:G	rs12595503	T	G	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr15	85430466	85430467	chr15:85430467:T:C	rs11856991	T	C	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr15	85463759	85463760	chr15:85463760:G:A	rs146913781	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr15	85484002	85484003	chr15:85484003:C:T	rs35813075	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr15	85623425	85623426	chr15:85623426:A:G	rs2880856	A	G	G	Sox3.mouse_HMG_2	2	1	-	2.3562353093953736	-4.01066199713037	TGTCAATGGGAGGGATT
chr15	85623428	85623429	chr15:85623429:T:G	rs12592253	T	G	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr15	85626119	85626120	chr15:85626120:A:G	rs71397886	A	G	A	Sox3.mouse_HMG_2	6	1	-	5.583650369923224	-0.805631064454666	GGTCAATGTCATTAACC
chr15	85706490	85706491	chr15:85706491:G:A	rs74346567	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr15	85724065	85724066	chr15:85724066:G:T	rs10852054	G	T	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr15	85746980	85746981	chr15:85746981:G:T	rs34121119	G	T	T	Sox3.mouse_HMG_2	14	1	+	5.925805578806743	5.224490324829699	CATCAATGTTAGAGGGT
chr15	85782892	85782893	chr15:85782893:A:C	rs12916187	A	C	A	Sox3.mouse_HMG_2	6	1	-	4.493937533816007	-2.414137693977051	GAACAATGTCCTTGAGC
chr15	85824535	85824536	chr15:85824536:C:T	rs2937940	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr15	85829105	85829106	chr15:85829106:C:T	rs182587458	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr15	86556138	86556139	chr15:86556139:A:G	rs73459654	A	G	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr15	86731948	86731949	chr15:86731949:G:A	rs1869184	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr15	86783103	86783104	chr15:86783104:T:A	rs16977979	T	A	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr15	86886255	86886256	chr15:86886256:G:T	rs766230	G	T	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr15	87219817	87219818	chr15:87219818:C:A	rs17811219	C	A	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr15	87354403	87354404	chr15:87354404:C:T	rs1026229	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr15	87595037	87595038	chr15:87595038:T:C	rs12915443	T	C	C	Sox3.mouse_HMG_2	9	1	+	3.811181805238511	3.1185292623665513	AATCCATTCTATTGGTC
chr15	87827359	87827360	chr15:87827360:T:C	rs1006113640	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr15	88386694	88386695	chr15:88386695:T:A	rs16941772	T	A	T	Sox3.mouse_HMG_2	10	1	-	2.01167238482848	-4.897082394486739	GGACAATTGCACTGAGG
chr15	88936930	88936931	chr15:88936931:T:C	rs35760425	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.336860095757147	-2.0524213386207424	GCACAATTGCATTCATG
chr15	89365173	89365174	chr15:89365174:G:A	rs146770285	G	A	G	Sox3.mouse_HMG_2	11	1	+	1.0691692739856293	-3.502314854347656	GGTCAATGCTGGTGGCT
chr15	89607711	89607712	chr15:89607712:C:T	rs2119606	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr15	89791008	89791009	chr15:89791009:A:G	rs25654	A	G	G	Sox3.mouse_HMG_2	12	1	-	1.3907110914575478	-4.66025604647327	CAACAACGTCATTGGGC
chr15	90105293	90105294	chr15:90105294:C:T	rs11073900	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr15	90113416	90113417	chr15:90113417:C:T	rs59337025	C	T	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr15	90165751	90165752	chr15:90165752:G:A	rs8038786	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr15	90348382	90348383	chr15:90348383:G:A	rs6496665	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr15	90419393	90419394	chr15:90419394:C:T	rs2526000	C	T	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr15	90646943	90646944	chr15:90646944:G:A	rs73491558	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr15	90743725	90743726	chr15:90743726:C:T	rs76838462	C	T	C	Sox3.mouse_HMG_2	12	1	+	7.565039131960006	13.616006269890823	CAACAATTGTATCGATA
chr15	90766093	90766094	chr15:90766094:G:A	rs3784781	G	A	.	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr15	90766244	90766245	chr15:90766245:G:A	rs3784780	G	A	.	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr15	90788315	90788316	chr15:90788316:G:A	rs7175811	G	A	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr15	90898984	90898985	chr15:90898985:G:C	rs78861158	G	C	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr15	90932043	90932044	chr15:90932044:G:A	rs34967259	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr15	91051724	91051725	chr15:91051725:C:T	rs6496755	C	T	c	Sox3.mouse_HMG_2	13	1	-	5.776458425741543	-0.2751800784447686	GAACAATGGTAATGGTA
chr15	91184406	91184407	chr15:91184407:A:G	rs4322639	A	G	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr15	91479427	91479428	chr15:91479428:A:G	rs4522399	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr15	91536802	91536803	chr15:91536803:A:C	rs1323925117	A	C	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr15	91783527	91783528	chr15:91783528:C:G	rs4356457	C	G	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr15	92128025	92128026	chr15:92128026:A:G	rs2190750	A	G	A	Sox3.mouse_HMG_2	15	1	-	10.841918443957688	7.062119026451891	TATCACTGGTATTGATG
chr15	92294815	92294816	chr15:92294816:A:G	rs8025981	A	G	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr15	92294865	92294866	chr15:92294866:T:C	rs8030602	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr15	92326060	92326061	chr15:92326061:A:T	rs7171546	A	T	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr15	92377690	92377691	chr15:92377691:C:T	rs2101436	C	T	C	Sox3.mouse_HMG_2	8	1	-	2.7657029927460552	1.5469126080015592	CATCAAATGTATTGTCT
chr15	92377718	92377719	chr15:92377719:C:T	rs7175122	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr15	92469326	92469327	chr15:92469327:C:T	rs17522085	C	T	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr15	92492880	92492881	chr15:92492881:T:C	rs78051899	T	C	T	Sox3.mouse_HMG_2	11	1	-	3.4670161011848726	8.038500229518158	CATTAATTTCAATGGTT
chr15	92546108	92546109	chr15:92546109:C:T	rs1378599	C	T	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr15	92575135	92575136	chr15:92575136:T:A	rs417297	T	A	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr15	92724105	92724106	chr15:92724106:C:T	rs2387916	C	T	c	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr15	92725925	92725926	chr15:92725926:G:C	rs8041556	G	C	c	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr15	92787195	92787196	chr15:92787196:A:G	rs12903536	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr15	92869547	92869548	chr15:92869548:C:G	rs10852181	C	G	G	Sox3.mouse_HMG_2	16	1	-	1.3015558246969874	0.0622844646704821	CCTGTATGTCAGTGATG
chr15	92882532	92882533	chr15:92882533:A:C	rs117294489	A	C	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr15	93040812	93040813	chr15:93040813:A:G	rs11631821	A	G	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr15	93053564	93053565	chr15:93053565:G:T	rs76697556	G	T	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr15	93250323	93250324	chr15:93250324:T:C	rs936677	T	C	C	Sox3.mouse_HMG_2	11	1	+	8.012571712569796	1.3281975131094594	GATCAATTTGATTGTTA
chr15	93317919	93317920	chr15:93317920:G:T	rs74029345	G	T	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr15	93546627	93546628	chr15:93546628:A:G	rs2130111	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.648302857901945	-3.740978576475945	TGTCAATGACAGTCACT
chr15	93563489	93563490	chr15:93563490:A:G	rs12443264	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.902944885950495	-3.781429313509839	TCGAAATGCTATTGATT
chr15	93612937	93612938	chr15:93612938:G:A	rs62025902	G	A	G	Sox3.mouse_HMG_2	8	1	-	1.6841452355762836	2.938567201731953	AATCAAGTCTACTGATG
chr15	93849026	93849027	chr15:93849027:C:A	rs566627940	C	A	C	Sox3.mouse_HMG_2	9	1	+	4.455953569733324	-0.8353751472790372	TGTCAATTTCAGTTAAA
chr15	93861131	93861132	chr15:93861132:C:T	rs34819625	C	T	C	Sox3.mouse_HMG_2	13	1	-	1.6936693320580196	-4.357969172128293	AGTCAATGGCAGCGACC
chr15	93896212	93896213	chr15:93896213:C:T	rs574467444	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr15	93940559	93940560	chr15:93940560:G:A	rs11853829	G	A	A	Sox3.mouse_HMG_2	9	1	-	1.3515752676741062	2.044227810546064	GTTCAATGGCAGTTCTG
chr15	94076013	94076014	chr15:94076014:G:A	rs7169001	G	A	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr15	94369754	94369755	chr15:94369755:G:A	rs3784654	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr15	94606108	94606109	chr15:94606109:C:T	rs80135573	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr15	94610090	94610091	chr15:94610091:C:G	rs4353444	C	G	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr15	94750648	94750649	chr15:94750649:T:C	rs8030354	T	C	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr15	94889271	94889272	chr15:94889272:A:C	rs4372639	A	C	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr15	95076076	95076077	chr15:95076077:C:T	rs59059558	C	T	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr15	95076113	95076114	chr15:95076114:C:T	rs57534978	C	T	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr15	95087684	95087685	chr15:95087685:G:C	rs73459904	G	C	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr15	95131861	95131862	chr15:95131862:T:G	rs28675767	T	G	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr15	95131880	95131881	chr15:95131881:T:A	rs62018912	T	A	T	Sox3.mouse_HMG_2	4	1	-	3.3616102343272964	-3.54646499346576	CGTCAGTGTCATTTATA
chr15	95131888	95131889	chr15:95131889:T:C	rs17666413	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr15	95509957	95509958	chr15:95509958:T:G	rs8043106	T	G	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr15	95598637	95598638	chr15:95598638:G:A	rs10520789	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr15	96234697	96234698	chr15:96234698:C:G	rs2577020	C	G	C	Sox3.mouse_HMG_2	13	1	-	4.470346895147998	-1.9169131437792153	CAACAATGCTATCGACA
chr15	96319531	96319532	chr15:96319532:A:G	rs11631953	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.625675057770034	-3.0586991416903	TTTCCATTCTATTGGTT
chr15	96410861	96410862	chr15:96410862:G:A	rs7170620	G	A	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr15	96786535	96786536	chr15:96786536:T:C	rs28506996	T	C	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr15	97170535	97170536	chr15:97170536:G:A	rs2045325	G	A	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr15	97370726	97370727	chr15:97370727:T:C	rs73466159	T	C	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr15	97898759	97898760	chr15:97898760:A:T	rs7183584	A	T	T	Sox3.mouse_HMG_2	10	1	+	2.3365462538139044	-4.572208525501315	GACCCATGACAGTGATT
chr15	97993827	97993828	chr15:97993828:C:A	rs902623	C	A	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr15	97993828	97993829	chr15:97993829:A:G	rs902624	A	G	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr15	98127693	98127694	chr15:98127694:C:T	rs28449535	C	T	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr15	98139056	98139057	chr15:98139057:A:T	rs4965464	A	T	T	Sox3.mouse_HMG_2	10	1	+	1.7789138982966817	-5.129840881018539	CATCAATGGCAGTTTGC
chr15	98139063	98139064	chr15:98139064:G:A	rs7166587	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr15	98155622	98155623	chr15:98155623:C:T	rs55869720	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr15	98188022	98188023	chr15:98188023:T:C	rs58670281	T	C	T	Sox3.mouse_HMG_2	2	1	+	3.9074922890897517	-2.459405017435994	GATAAATGCCATGGATA
chr15	98520175	98520176	chr15:98520176:A:G	rs7176797	A	G	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr15	98661253	98661254	chr15:98661254:T:C	rs6598539	T	C	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr15	98767861	98767862	chr15:98767862:A:G	rs72769824	A	G	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr15	98767897	98767898	chr15:98767898:A:C	rs12905037	A	C	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr15	98915097	98915098	chr15:98915098:T:C	rs3784605	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr15	98955564	98955565	chr15:98955565:C:T	rs28582005	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr15	99093974	99093975	chr15:99093975:C:T	rs1627542	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr15	99110708	99110709	chr15:99110709:G:A	rs73476358	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr15	99143359	99143360	chr15:99143360:C:G	rs55752512	C	G	C	Sox3.mouse_HMG_2	11	1	-	2.665232362864126	-2.6386196591823854	TGTCAATGCCTGTGTTT
chr15	99159195	99159196	chr15:99159196:G:A	rs181102824	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr15	99341249	99341250	chr15:99341250:A:C	rs3851679	A	C	C	Sox3.mouse_HMG_2	2	1	-	1.2580987094308362	-3.895775957249056	CATCCATGGCAGTGTGC
chr15	99395755	99395756	chr15:99395756:G:A	rs57643757	G	A	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr15	99504271	99504272	chr15:99504272:G:T	chr15:99504272:G:T	G	T	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr15	99567077	99567078	chr15:99567078:A:G	rs911706969	A	G	a	Sox3.mouse_HMG_2	11	1	-	3.104873575059902	-3.5795006244004335	CAACAATTCTATAGTTA
chr15	99712102	99712103	chr15:99712103:T:G	rs60066240	T	G	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr15	99762987	99762988	chr15:99762988:T:C	rs2958986	T	C	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr15	99790963	99790964	chr15:99790964:T:C	rs1060458	T	C	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr15	99959159	99959160	chr15:99959160:A:G	rs745104	A	G	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr15	99963798	99963799	chr15:99963799:G:C	rs55920749	G	C	g	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr15	99963808	99963809	chr15:99963809:A:C	rs56103220	A	C	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr15	99967041	99967042	chr15:99967042:T:C	rs2727172	T	C	T	Sox3.mouse_HMG_2	1	1	-	7.968334338910747	5.961946396891291	CAACATTGCTATTGATT
chr15	100079677	100079678	chr15:100079678:C:G	rs10152483	C	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr15	100108566	100108567	chr15:100108567:A:G	rs28628777	A	G	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr15	100283543	100283544	chr15:100283544:C:G	rs4965626	C	G	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr15	100283564	100283565	chr15:100283565:T:C	rs4965303	T	C	T	Sox3.mouse_HMG_2	15	1	+	2.847558596583531	-0.9322408209222649	TCTCAAAGTCAGTGTTG
chr15	100517928	100517929	chr15:100517929:C:G	rs11247215	C	G	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr15	100765638	100765639	chr15:100765639:A:G	rs191690538	A	G	A	Sox3.mouse_HMG_2	15	1	-	2.5004102380594273	-1.2793891794463685	TGTCCATTTTATGGATT
chr15	100771460	100771461	chr15:100771461:A:G	rs577228209	A	G	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr15	100850080	100850081	chr15:100850081:A:G	rs28621749	A	G	a	Sox3.mouse_HMG_2	11	1	-	9.231380036964548	2.547005837504213	GTTCAATGTCATTGGCT
chr15	100850100	100850101	chr15:100850101:A:G	rs115302369	A	G	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr15	100968601	100968602	chr15:100968602:T:A	rs4965748	T	A	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr15	101011663	101011664	chr15:101011664:T:A	rs6598413	T	A	A	Sox3.mouse_HMG_2	2	1	-	5.091134325288288	8.372791101071826	TGATAATGCCAGTGATG
chr15	101055474	101055475	chr15:101055475:G:A	rs8041944	G	A	G	Sox3.mouse_HMG_2	3	1	-	4.447844080887157	-0.40901179433506335	CTACAATGTTACTGAAT
chr15	101253445	101253446	chr15:101253446:T:C	rs2170625	T	C	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr15	101370305	101370306	chr15:101370306:A:C	rs2073591	A	C	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr15	101429449	101429450	chr15:101429450:C:T	rs72772622	C	T	C	Sox3.mouse_HMG_2	7	1	-	-0.10136846503796056	-6.7301899601260144	CGTCCAGGCCAGTGATG
chr15	101451741	101451742	chr15:101451742:C:T	rs7173205	C	T	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr15	101500612	101500613	chr15:101500613:A:G	rs2898886	A	G	A	Sox3.mouse_HMG_2	10	1	+	6.319817476347115	-0.5889373029681053	CAGCAATGCTACTGATT
chr15	101552591	101552592	chr15:101552592:C:G	rs11638504	C	G	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr16	146990	146991	chr16:146991:G:A	rs79724257	G	A	g	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr16	424216	424217	chr16:424217:C:T	rs74328830	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr16	630808	630809	chr16:630809:C:G	rs4984904	C	G	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr16	642315	642316	chr16:642316:G:A	rs149842174	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr16	931860	931861	chr16:931861:A:G	rs4984720	A	G	A	Sox3.mouse_HMG_2	2	1	-	4.584244603925034	-1.7826527026007115	CATTAATGTTAATGTTT
chr16	1137732	1137733	chr16:1137733:G:A	rs117540024	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr16	1205057	1205058	chr16:1205058:T:G	rs8052049	T	G	G	Sox3.mouse_HMG_2	12	1	+	-0.009359908321335222	-6.395948580993051	GATCAGTGCCGGTGAGG
chr16	1404169	1404170	chr16:1404170:T:C	rs909923	T	C	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr16	1432005	1432006	chr16:1432006:T:G	rs4984838	T	G	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr16	1559538	1559539	chr16:1559539:G:A	rs115679100	G	A	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr16	1613718	1613719	chr16:1613719:C:T	chr16:1613719:C:T	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr16	1703427	1703428	chr16:1703428:T:C	rs6600163	T	C	C	Sox3.mouse_HMG_2	4	1	-	4.658912434379888	-1.730368999998003	CATCAACTCAATTGATT
chr16	1823918	1823919	chr16:1823919:G:A	rs145697684	G	A	g	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr16	1823947	1823948	chr16:1823948:C:A	rs58222621	C	A	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr16	2407498	2407499	chr16:2407499:G:T	rs66496842	G	T	-	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr16	2503352	2503353	chr16:2503353:A:G	rs11543247	A	G	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr16	2679932	2679933	chr16:2679933:G:C	rs112436312	G	C	N	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr16	2835677	2835678	chr16:2835678:A:G	rs75106776	A	G	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr16	2835692	2835693	chr16:2835693:A:G	rs76693058	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr16	2852830	2852831	chr16:2852831:C:G	rs12786	C	G	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr16	2928442	2928443	chr16:2928443:A:C	rs111624331	A	C	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr16	2957944	2957945	chr16:2957945:G:A	rs569388161	G	A	g	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr16	3135735	3135736	chr16:3135736:T:C	rs560947	T	C	C	Sox3.mouse_HMG_2	9	1	+	9.825754723972182	9.133102181100224	GTACAATGGTATTGAGG
chr16	3177883	3177884	chr16:3177884:G:A	rs7205923	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr16	3525269	3525270	chr16:3525270:T:G	rs13332500	T	G	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr16	4147994	4147995	chr16:4147995:T:G	rs1076255	T	G	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr16	4852317	4852318	chr16:4852318:G:C	rs74003517	G	C	G	Sox3.mouse_HMG_2	11	1	+	2.6659119143862897	-2.6379401076602216	TGTCAAGGCCAGTGTTT
chr16	4913439	4913440	chr16:4913440:T:A	rs141191494	T	A	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr16	4913456	4913457	chr16:4913457:T:C	rs12444913	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr16	4944013	4944014	chr16:4944014:T:C	rs62038590	T	C	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr16	5537699	5537700	chr16:5537700:A:T	rs8059193	A	T	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr16	5557916	5557917	chr16:5557917:A:G	rs55646071	A	G	G	Sox3.mouse_HMG_2	5	1	+	6.133109932999688	-0.2561715013782024	GAACAATGACAGTGGAA
chr16	5590263	5590264	chr16:5590264:C:T	rs8053659	C	T	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr16	5590274	5590275	chr16:5590275:G:T	rs8052571	G	T	G	Sox3.mouse_HMG_2	8	1	+	7.461423372308785	8.275061305312997	GCTCACTTGCATTGATT
chr16	5668489	5668490	chr16:5668490:A:G	rs11647901	A	G	G	Sox3.mouse_HMG_2	6	1	-	1.2236692513721754	-5.165612183005715	CAGCAGTGCCAGTGGTT
chr16	6133167	6133168	chr16:6133168:T:C	rs59096979	T	C	T	Sox3.mouse_HMG_2	11	1	+	1.29369722638155	-5.3906769730787865	GCTCAATTCTCTTGGGG
chr16	6250449	6250450	chr16:6250450:G:T	rs62015142	G	T	G	Sox3.mouse_HMG_2	0	1	+	1.5394440534936762	0.7496755217153805	GAGCAATGCTATGGACC
chr16	6298239	6298240	chr16:6298240:G:A	rs34406606	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr16	6414932	6414933	chr16:6414933:C:G	rs138552264	C	G	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr16	6489014	6489015	chr16:6489015:C:T	rs62016826	C	T	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr16	6489045	6489046	chr16:6489046:C:T	rs78322108	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr16	6958789	6958790	chr16:6958790:C:T	rs148792262	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr16	6968107	6968108	chr16:6968108:C:G	rs756381099	C	G	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr16	6968118	6968119	chr16:6968119:A:T	rs78226820	A	T	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr16	7009570	7009571	chr16:7009571:A:G	rs2029626	A	G	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr16	7157082	7157083	chr16:7157083:A:G	rs149344958	A	G	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr16	7236943	7236944	chr16:7236944:T:C	rs2346612	T	C	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr16	7319878	7319879	chr16:7319879:A:G	rs35767895	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.3991660437570115	-2.2852081557033235	AGTCCATGGTATTGGTA
chr16	7331373	7331374	chr16:7331374:G:T	rs76542371	G	T	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr16	7398208	7398209	chr16:7398209:A:G	rs74012549	A	G	A	Sox3.mouse_HMG_2	15	1	-	1.7798427169221978	-1.999956700583598	AGGCAATGATACTGATG
chr16	7745276	7745277	chr16:7745277:G:A	rs74331698	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr16	7871679	7871680	chr16:7871680:G:T	rs11648513	G	T	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr16	8033249	8033250	chr16:8033250:A:G	rs58368518	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr16	8251560	8251561	chr16:8251561:C:T	rs55650867	C	T	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr16	8356079	8356080	chr16:8356080:A:G	rs775837803	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr16	8371305	8371306	chr16:8371306:G:C	rs39783	G	C	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr16	8409226	8409227	chr16:8409227:G:T	rs1528341	G	T	T	Sox3.mouse_HMG_2	3	1	-	5.804612498373531	-1.0960577408853744	CTTCATTTTTATTGAAA
chr16	8461739	8461740	chr16:8461740:A:T	rs4787222	A	T	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr16	8461781	8461782	chr16:8461782:A:G	rs4238896	A	G	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr16	8500490	8500491	chr16:8500491:A:T	rs9921138	A	T	A	Sox3.mouse_HMG_2	12	1	-	9.180383461907219	3.129416323976402	ACTTAATGTCATTGATA
chr16	8537741	8537742	chr16:8537742:C:T	rs71377115	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr16	8667834	8667835	chr16:8667835:G:A	rs11861023	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr16	8683769	8683770	chr16:8683770:C:A	rs66839842	C	A	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr16	8683786	8683787	chr16:8683787:T:G	rs35896679	T	G	T	Sox3.mouse_HMG_2	12	1	-	2.512391551820164	2.512391551820164	GTTCAATACTATAGATA
chr16	8728982	8728983	chr16:8728983:C:G	rs4984997	C	G	G	Sox3.mouse_HMG_2	0	1	+	2.6211521964240925	2.9257857139482804	CGTCATTTTTATTCATG
chr16	8862845	8862846	chr16:8862846:G:A	rs254945	G	A	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr16	8923491	8923492	chr16:8923492:T:C	rs55678416	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr16	8932241	8932242	chr16:8932242:C:T	rs77188284	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr16	8949357	8949358	chr16:8949358:T:C	rs7192015	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr16	8961926	8961927	chr16:8961927:T:C	rs139826487	T	C	T	Sox3.mouse_HMG_2	5	1	-	9.62518044727865	3.2358990129007603	TATCAATGGCAGTAATG
chr16	9010624	9010625	chr16:9010625:G:A	rs35614103	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr16	9309724	9309725	chr16:9309725:C:T	rs3909919	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr16	9413029	9413030	chr16:9413030:A:G	rs191149099	A	G	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr16	9484396	9484397	chr16:9484397:A:G	rs4780443	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.3358062150062286	-3.05347521937166	CCACAATGGTATTCAAA
chr16	9565905	9565906	chr16:9565906:C:A	rs4322664	C	A	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr16	9596320	9596321	chr16:9596321:T:G	rs59420306	T	G	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr16	9677417	9677418	chr16:9677418:A:T	rs60158444	A	T	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr16	9821854	9821855	chr16:9821855:C:A	rs2072450	C	A	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr16	9896933	9896934	chr16:9896934:G:A	rs13338500	G	A	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr16	9976687	9976688	chr16:9976688:C:T	rs4998386	C	T	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr16	10022841	10022842	chr16:10022842:C:A	rs9921906	C	A	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr16	10123048	10123049	chr16:10123049:C:T	rs7204513	C	T	t	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr16	10306057	10306058	chr16:10306058:G:T	rs67598836	G	T	T	Sox3.mouse_HMG_2	13	1	+	6.036530977528379	-0.35072906139883303	TATTTATTTTATTGATT
chr16	10648067	10648068	chr16:10648068:A:C	rs2719759	A	C	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr16	10648086	10648087	chr16:10648087:T:C	rs7186996	T	C	T	Sox3.mouse_HMG_2	4	1	-	2.3074728725878866	-4.081808561790004	CATCAAAGGCATTTAAT
chr16	10676683	10676684	chr16:10676684:G:A	rs1079016	G	A	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr16	10957185	10957186	chr16:10957186:A:G	rs34033347	A	G	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr16	11060912	11060913	chr16:11060913:G:A	rs2286973	G	A	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr16	11206237	11206238	chr16:11206238:C:T	rs78759143	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr16	11296701	11296702	chr16:11296702:G:A	rs57831720	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr16	11342132	11342133	chr16:11342133:T:C	rs6498184	T	C	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr16	11367923	11367924	chr16:11367924:G:C	rs78544881	G	C	G	Sox3.mouse_HMG_2	0	1	-	5.051095556630299	5.355729074154487	CCACAATTCAATTGATT
chr16	11384290	11384291	chr16:11384291:A:G	rs1139052	A	G	A	Sox3.mouse_HMG_2	4	1	+	5.434749019519152	-0.9545324148587374	CTTCATTGTCATTGGTG
chr16	11475597	11475598	chr16:11475598:A:G	rs9936203	A	G	G	Sox3.mouse_HMG_2	4	1	+	3.56015144143272	-2.8291299929451688	GTACAATGTCATGGAGG
chr16	11584098	11584099	chr16:11584099:A:C	rs12444653	A	C	A	Sox3.mouse_HMG_2	6	1	-	2.6877982847921555	-4.2202769430009	TCTGAATTTGATTGATG
chr16	11596102	11596103	chr16:11596103:G:C	rs142976428	G	C	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr16	11624404	11624405	chr16:11624405:T:C	rs6498232	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr16	11624455	11624456	chr16:11624456:T:C	rs112838092	T	C	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr16	11687504	11687505	chr16:11687505:C:G	rs77314133	C	G	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr16	11741468	11741469	chr16:11741469:G:C	rs151065717	G	C	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr16	11796121	11796122	chr16:11796122:T:G	rs73508202	T	G	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr16	11964356	11964357	chr16:11964357:T:C	rs10451085	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr16	11964378	11964379	chr16:11964379:C:A	rs10451099	C	A	A	Sox3.mouse_HMG_2	0	1	-	0.7334792719267649	-0.05628925985152984	GCACAATGCCACTGACA
chr16	11978266	11978267	chr16:11978267:G:A	rs442332	G	A	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr16	11986684	11986685	chr16:11986685:A:C	rs434455	A	C	A	Sox3.mouse_HMG_2	0	1	+	6.190294139011047	7.582152915189522	AGTCAATTCCATTTATG
chr16	12095925	12095926	chr16:12095926:G:A	rs565665946	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr16	12148009	12148010	chr16:12148010:G:C	rs78415362	G	C	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr16	12148015	12148016	chr16:12148016:G:C	rs350224	G	C	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr16	12289967	12289968	chr16:12289968:C:T	chr16:12289968:C:T	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr16	12289978	12289979	chr16:12289979:C:T	rs137964461	C	T	C	Sox3.mouse_HMG_2	9	1	+	0.49098212743788333	1.1836346703098422	CGTCACTGGCAGTGTGG
chr16	12647278	12647279	chr16:12647279:C:G	rs16960380	C	G	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr16	12647316	12647317	chr16:12647317:C:T	rs76342576	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr16	12655637	12655638	chr16:12655638:G:A	rs1713482	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr16	12716374	12716375	chr16:12716375:C:T	rs8050225	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr16	12759331	12759332	chr16:12759332:C:T	rs3859029	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr16	12971861	12971862	chr16:12971862:T:G	rs12445256	T	G	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr16	13015736	13015737	chr16:13015737:G:T	rs72782702	G	T	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr16	13015761	13015762	chr16:13015762:G:T	rs62027194	G	T	G	Sox3.mouse_HMG_2	3	1	-	1.237940105589171	-5.662730133669734	TTTCAAGGGTGTTGATG
chr16	13194320	13194321	chr16:13194321:G:C	rs188229455	G	C	G	Sox3.mouse_HMG_2	11	1	+	2.729903132811025	-2.573948889235486	TCTGAATGTTAGAGATT
chr16	13216918	13216919	chr16:13216919:C:A	rs56396226	C	A	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr16	13767481	13767482	chr16:13767482:C:T	rs2227016	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr16	13865749	13865750	chr16:13865750:T:C	rs231131	T	C	T	Sox3.mouse_HMG_2	5	1	-	5.084009955966153	-1.3052714784117365	ACTCAATGTTTTTGAGA
chr16	13910406	13910407	chr16:13910407:T:C	rs74009234	T	C	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr16	13984367	13984368	chr16:13984368:G:A	rs56205108	G	A	G	Sox3.mouse_HMG_2	13	1	+	3.504895877084912	-2.5467426271013993	CTTTAATTCTAGTGTTA
chr16	14111978	14111979	chr16:14111979:G:A	rs1122454	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr16	14282385	14282386	chr16:14282386:G:A	rs30240	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr16	15426310	15426311	chr16:15426311:C:T	rs153776	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr16	15518442	15518443	chr16:15518443:A:C	chr16:15518443:A:C	A	C	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr16	15572656	15572657	chr16:15572657:C:T	rs116889381	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr16	15824840	15824841	chr16:15824841:T:G	rs2733854	T	G	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr16	15824842	15824843	chr16:15824843:G:A	rs2633506	G	A	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr16	15885941	15885942	chr16:15885942:C:A	rs12051454	C	A	C	Sox3.mouse_HMG_2	4	1	+	0.673293479133164	7.581368706926221	CATCCCTTGTAGTGATC
chr16	16067567	16067568	chr16:16067568:G:A	rs9932506	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr16	17026838	17026839	chr16:17026839:A:G	rs16968294	A	G	A	Sox3.mouse_HMG_2	11	1	-	1.936073432953149	-4.748300766507185	CCTTTATGTCATTGAAT
chr16	17178004	17178005	chr16:17178005:G:A	rs7190310	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr16	17212803	17212804	chr16:17212804:C:T	rs2311139	C	T	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr16	17225817	17225818	chr16:17225818:T:C	rs8056987	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr16	17269478	17269479	chr16:17269479:A:G	rs62033193	A	G	A	Sox3.mouse_HMG_2	16	1	-	2.430993827725472	0.8280007780650211	AAACTATGTTAGTGTTT
chr16	17278505	17278506	chr16:17278506:C:G	rs139368590	C	G	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr16	17343895	17343896	chr16:17343896:C:G	rs113712355	C	G	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr16	17343912	17343913	chr16:17343913:A:G	rs7185284	A	G	A	Sox3.mouse_HMG_2	11	1	-	1.6694561060865025	-5.014918093373834	TGTAAATGTCATTGGGC
chr16	17370185	17370186	chr16:17370186:G:A	rs117001239	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr16	17497632	17497633	chr16:17497633:C:T	rs74014013	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr16	17520720	17520721	chr16:17520721:C:T	rs74014049	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr16	17669341	17669342	chr16:17669342:T:C	rs7189916	T	C	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr16	18019386	18019387	chr16:18019387:T:C	rs72773656	T	C	T	Sox3.mouse_HMG_2	4	1	-	6.476548283666792	0.08726684928890087	CCTCAAAGTTATTGAGA
chr16	18743871	18743872	chr16:18743872:C:A	rs7206538	C	A	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr16	18835106	18835107	chr16:18835107:G:A	rs56079655	G	A	G	Sox3.mouse_HMG_2	7	1	+	6.592313958033777	-0.03650753705428007	TTTCAGTGGCAGTGATG
chr16	18866797	18866798	chr16:18866798:T:C	rs11648912	T	C	-	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr16	19191036	19191037	chr16:19191037:G:C	rs80202052	G	C	G	Sox3.mouse_HMG_2	6	1	+	0.6553995164363774	1.1741933098515447	GAACAAGGGCAGTGGAG
chr16	19386768	19386769	chr16:19386769:T:C	rs7187909	T	C	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr16	19706662	19706663	chr16:19706663:C:A	rs34069083	C	A	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr16	19881856	19881857	chr16:19881857:G:T	rs79155407	G	T	G	Sox3.mouse_HMG_2	16	1	-	1.6604244697047044	2.688121403245959	TGTAAATTCCAGTGAAC
chr16	20200603	20200604	chr16:20200604:C:T	rs117416259	C	T	c	Sox3.mouse_HMG_2	5	1	-	2.5097410388296044	8.899022473207497	TGACAGTGTCAGTGAAG
chr16	20327808	20327809	chr16:20327809:T:C	rs4643330	T	C	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr16	20381009	20381010	chr16:20381010:G:A	rs77924615	G	A	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr16	20763633	20763634	chr16:20763634:A:G	rs577677864	A	G	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr16	21163040	21163041	chr16:21163041:G:A	rs74507963	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr16	21510628	21510629	chr16:21510629:A:C	rs1424868606	A	C	.	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr16	21527028	21527029	chr16:21527029:G:A	rs545205	G	A	.	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr16	21527065	21527066	chr16:21527066:G:A	chr16:21527066:G:A	G	A	.	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr16	21527065	21527066	chr16:21527066:G:C	rs740592	G	C	.	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr16	21637563	21637564	chr16:21637564:C:T	rs577184067	C	T	c	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr16	21727665	21727666	chr16:21727666:G:C	rs7184989	G	C	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr16	21727670	21727671	chr16:21727671:G:A	rs12934324	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr16	22189913	22189914	chr16:22189914:G:A	rs9938607	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr16	22189927	22189928	chr16:22189928:A:C	chr16:22189928:A:C	A	C	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr16	22353835	22353836	chr16:22353836:G:A	rs1005667164	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr16	22616552	22616553	chr16:22616553:A:C	rs377201275	A	C	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr16	22639887	22639888	chr16:22639888:G:A	rs382106	G	A	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr16	22648028	22648029	chr16:22648029:C:T	rs13333600	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr16	22963553	22963554	chr16:22963554:A:C	rs2519981	A	C	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr16	23036069	23036070	chr16:23036070:A:C	rs11074538	A	C	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr16	23174865	23174866	chr16:23174866:C:T	rs530940821	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr16	23352077	23352078	chr16:23352078:A:T	rs3785361	A	T	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr16	23514826	23514827	chr16:23514827:A:G	rs145948178	A	G	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr16	23951514	23951515	chr16:23951515:C:A	rs7199531	C	A	A	Sox3.mouse_HMG_2	9	1	+	4.251284387974031	-1.0400443290383297	CCTCAACTCCAGTGATC
chr16	23999474	23999475	chr16:23999475:A:G	rs7201380	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr16	24021894	24021895	chr16:24021895:G:A	rs9926282	G	A	g	Sox3.mouse_HMG_2	0	1	-	9.616310094813334	9.131175080559228	CACCAATTTTATTGAAT
chr16	24114416	24114417	chr16:24114417:T:C	rs28603301	T	C	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr16	24611690	24611691	chr16:24611691:A:T	rs2033218	A	T	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr16	24669117	24669118	chr16:24669118:A:G	rs16973907	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.387830695416426	-2.001450738961464	TAACAATGTGAGTGGTA
chr16	24701167	24701168	chr16:24701168:A:G	rs9302425	A	G	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr16	25091198	25091199	chr16:25091199:T:C	rs874562	T	C	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr16	25466392	25466393	chr16:25466393:T:C	rs9935555	T	C	t	Sox3.mouse_HMG_2	1	1	-	2.6956762274700035	0.689288285450546	CAACAATGCGATTGGAA
chr16	25948836	25948837	chr16:25948837:A:G	rs4075109	A	G	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr16	25948850	25948851	chr16:25948851:C:T	rs34709550	C	T	C	Sox3.mouse_HMG_2	8	1	-	1.353874301128714	0.13508391638421785	TAACAACGGCATTGCTG
chr16	25963565	25963566	chr16:25963566:G:A	rs563376805	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr16	26475638	26475639	chr16:26475639:G:A	rs8056075	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr16	26756267	26756268	chr16:26756268:G:A	rs7199080	G	A	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr16	27305079	27305080	chr16:27305080:A:C	rs4547336	A	C	C	Sox3.mouse_HMG_2	1	1	+	2.3938689979849666	-0.3215725383589734	CATGAATTGCATTGCAT
chr16	27415073	27415074	chr16:27415074:G:A	rs56383417	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr16	27424615	27424616	chr16:27424616:G:A	rs9921638	G	A	A	Sox3.mouse_HMG_2	12	1	+	1.912769968355107	2.248391503096006	CCTCCATTTTATGGATG
chr16	27467907	27467908	chr16:27467908:T:C	rs35913539	T	C	T	Sox3.mouse_HMG_2	0	1	+	2.326561690908176	2.8116967051622828	TAGCTATTATAGTGATT
chr16	27516138	27516139	chr16:27516139:C:G	rs148761519	C	G	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr16	27759491	27759492	chr16:27759492:C:T	rs6498034	C	T	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr16	27978951	27978952	chr16:27978952:C:A	rs6498054	C	A	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr16	28620263	28620264	chr16:28620264:T:G	rs1968752	T	G	.	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr16	28814631	28814632	chr16:28814632:A:G	rs56186137	A	G	.	Sox3.mouse_HMG_2	4	1	+	6.699787312215002	0.3105058778371131	TGTCAATGTTCTTGAGA
chr16	28842674	28842675	chr16:28842675:A:C	rs3088215	A	C	.	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr16	29129366	29129367	chr16:29129367:T:C	rs1646129	T	C	.	Sox3.mouse_HMG_2	6	1	+	2.8024143290157477	-3.586867105362143	AATCAGTTGCATTGGAA
chr16	29212142	29212143	chr16:29212143:C:G	chr16:29212143:C:G	C	G	.	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr16	29234011	29234012	chr16:29234012:T:C	rs252475	T	C	N	Sox3.mouse_HMG_2	10	1	-	3.158592290818569	-3.7501624884966502	CGTCATTTGTAGTGTTT
chr16	29294718	29294719	chr16:29294719:A:T	rs112358628	A	T	.	Sox3.mouse_HMG_2	10	1	+	4.510881242613092	-2.3978735367021287	TAACATTTTTATTGAGG
chr16	30377964	30377965	chr16:30377965:T:A	rs1447697504	T	A	T	Sox3.mouse_HMG_2	10	1	-	2.3648472833989285	-4.543907495916293	GTTAAATTTTATTGGGA
chr16	31262208	31262209	chr16:31262209:T:A	rs7196256	T	A	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr16	31695842	31695843	chr16:31695843:T:C	rs933334756	T	C	t	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr16	31708405	31708406	chr16:31708406:G:T	rs3751742	G	T	g	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr16	31869660	31869661	chr16:31869661:A:C	chr16:31869661:A:C	A	C	.	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr16	31869676	31869677	chr16:31869677:T:G	chr16:31869677:T:G	T	G	.	Sox3.mouse_HMG_2	12	1	+	4.001514194734757	-2.38507447793696	TGACAATGGCAGTCATG
chr16	34574221	34574222	chr16:34574222:T:C	rs1222614021	T	C	.	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr16	34574226	34574227	chr16:34574227:G:A	rs1347717593	G	A	.	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr16	34594251	34594252	chr16:34594252:T:A	rs904323822	T	A	.	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr16	34595603	34595604	chr16:34595604:T:C	chr16:34595604:T:C	T	C	.	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr16	36336502	36336503	chr16:36336503:T:C	rs1321487182	T	C	.	Sox3.mouse_HMG_2	6	1	+	2.3700274206452936	-4.019254013732596	GGTCAATTCTGTTAATT
chr16	46387358	46387359	chr16:46387359:A:G	rs28837417	A	G	.	Sox3.mouse_HMG_2	5	1	-	4.811452779457214	4.811452779457214	GATGATTGCCATTGATT
chr16	46387380	46387381	chr16:46387381:C:T	rs4511562	C	T	.	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr16	46389541	46389542	chr16:46389542:A:G	rs7195077	A	G	.	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr16	46687849	46687850	chr16:46687850:T:C	rs78674672	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr16	46689658	46689659	chr16:46689659:G:A	rs144065502	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr16	46689685	46689686	chr16:46689686:T:C	rs33994299	T	C	T	Sox3.mouse_HMG_2	2	1	-	1.1668396276626076	-0.7053782632337466	GAACAATTCCCGTGAAC
chr16	47644489	47644490	chr16:47644490:A:G	rs920454085	A	G	A	Sox3.mouse_HMG_2	5	1	+	0.8323908228417454	-5.556890611536141	GCACTATGTCAGTGAAC
chr16	47905005	47905006	chr16:47905006:A:G	rs12102461	A	G	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr16	47905007	47905008	chr16:47905008:C:G	rs12102967	C	G	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr16	47916613	47916614	chr16:47916614:T:G	rs73539118	T	G	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr16	48188880	48188881	chr16:48188881:T:A	rs75882145	T	A	T	Sox3.mouse_HMG_2	1	1	-	2.0750190969006033	-0.6202044621526916	AATAAATGCCATTGGCT
chr16	48555984	48555985	chr16:48555985:G:A	rs9921741	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr16	48898471	48898472	chr16:48898472:A:G	rs2216190	A	G	G	Sox3.mouse_HMG_2	15	1	+	4.553650599168347	4.119913147907006	GATCACTGTTAATGAAT
chr16	49335530	49335531	chr16:49335531:A:G	rs36509	A	G	A	Sox3.mouse_HMG_2	12	1	-	1.660422638494494	-4.390544499436323	CCTCAATTTTGGTGGAT
chr16	49408929	49408930	chr16:49408930:G:A	rs11862457	G	A	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr16	49426292	49426293	chr16:49426293:A:G	rs80270640	A	G	A	Sox3.mouse_HMG_2	2	1	-	5.172134499959272	-1.1947628065664735	CATCAACTTCATTGCTT
chr16	49471183	49471184	chr16:49471184:G:C	rs111493592	G	C	g	Sox3.mouse_HMG_2	1	1	-	1.9679876960099512	2.677041290334433	ACTCAATGCCTGTGAGG
chr16	49541252	49541253	chr16:49541253:G:A	rs60306270	G	A	G	Sox3.mouse_HMG_2	13	1	+	0.07009249970946918	-5.981546004476843	GCTCAATGGCAGGGGGC
chr16	50026148	50026149	chr16:50026149:C:T	rs144383340	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr16	50102614	50102615	chr16:50102615:C:T	rs1477132	C	T	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr16	50304011	50304012	chr16:50304012:G:T	rs142453663	G	T	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr16	50409495	50409496	chr16:50409496:C:T	rs4598913	C	T	C	Sox3.mouse_HMG_2	16	1	+	2.1588124509715856	3.7618055006320366	GATGAATGTCTTTGAAC
chr16	50731464	50731465	chr16:50731465:A:G	rs7203344	A	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr16	50974633	50974634	chr16:50974634:T:C	rs58302873	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr16	51138611	51138612	chr16:51138612:G:A	rs77466256	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr16	51218240	51218241	chr16:51218241:G:C	rs8044297	G	C	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr16	51732789	51732790	chr16:51732790:G:A	rs1486440	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr16	51732795	51732796	chr16:51732796:G:A	rs1486441	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr16	51891790	51891791	chr16:51891791:T:C	rs13335019	T	C	T	Sox3.mouse_HMG_2	11	1	+	4.1672265037631	-2.5171476956972363	TCTCACTTTCATTGGTT
chr16	52447036	52447037	chr16:52447037:T:C	rs78873768	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr16	52655600	52655601	chr16:52655601:A:G	rs9925027	A	G	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr16	53837990	53837991	chr16:53837991:A:C	rs17818920	A	C	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr16	54067001	54067002	chr16:54067002:A:G	rs2075204	A	G	A	Sox3.mouse_HMG_2	10	1	+	6.920110766171693	0.011355986856472544	CATTAATGTTATTGCTC
chr16	54067018	54067019	chr16:54067019:C:T	rs13338113	C	T	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr16	54118135	54118136	chr16:54118136:A:T	rs11076023	A	T	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr16	54240702	54240703	chr16:54240703:G:T	rs55970991	G	T	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr16	54370179	54370180	chr16:54370180:G:A	rs80227516	G	A	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr16	54370187	54370188	chr16:54370188:T:C	rs80247320	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr16	54447926	54447927	chr16:54447927:C:T	rs61437728	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr16	54447966	54447967	chr16:54447967:A:C	rs147567685	A	C	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr16	54585923	54585924	chr16:54585924:G:C	rs744213	G	C	g	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr16	54817622	54817623	chr16:54817623:C:T	rs144866952	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr16	55076029	55076030	chr16:55076030:C:A	rs7198804	C	A	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr16	55276537	55276538	chr16:55276538:C:T	rs9938848	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr16	55321867	55321868	chr16:55321868:C:T	rs115881607	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr16	55747521	55747522	chr16:55747522:T:C	rs9937399	T	C	t	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr16	55781609	55781610	chr16:55781610:T:G	rs28409947	T	G	T	Sox3.mouse_HMG_2	14	1	-	4.794988813926578	-1.2375398036620682	AGTGAATGGTATTGACA
chr16	55811540	55811541	chr16:55811541:C:T	rs151069757	C	T	c	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr16	55875357	55875358	chr16:55875358:T:A	rs7188305	T	A	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr16	55947670	55947671	chr16:55947671:A:G	rs28472470	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr16	56121805	56121806	chr16:56121806:C:T	rs7202833	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr16	56246536	56246537	chr16:56246537:C:T	rs778749801	C	T	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr16	56289319	56289320	chr16:56289320:A:G	rs8043572	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.697490283824557	0.3082088494466681	CATCAATGAGAGTGGTT
chr16	56460331	56460332	chr16:56460332:A:G	rs185266415	A	G	A	Sox3.mouse_HMG_2	0	1	-	3.373598601736608	3.8587336159907166	TGTTAATTGTATTCATG
chr16	56542642	56542643	chr16:56542643:T:C	rs417053	T	C	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr16	56673465	56673466	chr16:56673466:A:G	rs34984270	A	G	.	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr16	56691260	56691261	chr16:56691261:A:G	rs8064100	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr16	56708447	56708448	chr16:56708448:A:C	rs4783954	A	C	A	Sox3.mouse_HMG_2	7	1	-	3.389185220804	4.515076434649243	CAACAATTGTCTTGGTA
chr16	56781707	56781708	chr16:56781708:G:A	rs11643731	G	A	G	Sox3.mouse_HMG_2	14	1	+	2.3756211473582427	5.693687417129844	GAGTAATTGCAGTGGTT
chr16	56839582	56839583	chr16:56839583:C:T	rs1138295	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr16	56957611	56957612	chr16:56957612:G:A	rs6499862	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr16	56984723	56984724	chr16:56984724:C:T	rs66495554	C	T	-	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr16	57047114	57047115	chr16:57047115:G:T	rs289724	G	T	T	Sox3.mouse_HMG_2	13	1	+	3.1345341392902255	-3.2527258996369857	TTTCAATTTCACTGTTA
chr16	57289731	57289732	chr16:57289732:G:A	rs11076187	G	A	A	Sox3.mouse_HMG_2	13	1	+	3.3824948986437358	-2.669143605542576	CCTTAATTTTATTGTGA
chr16	57319852	57319853	chr16:57319853:T:C	rs12924770	T	C	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr16	57388533	57388534	chr16:57388534:A:T	rs778166807	A	T	g	Sox3.mouse_HMG_2	10	1	+	1.2167697168334297	-5.69198506248179	GATCTTTGCCATTGAGT
chr16	57507957	57507958	chr16:57507958:G:A	rs766791642	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr16	57507972	57507973	chr16:57507973:A:G	rs62039369	A	G	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr16	57892264	57892265	chr16:57892265:G:A	rs8044277	G	A	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr16	57892266	57892267	chr16:57892267:A:G	rs8046202	A	G	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr16	58176982	58176983	chr16:58176983:G:A	rs2731747	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr16	58251283	58251284	chr16:58251284:G:A	rs2731761	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr16	58506157	58506158	chr16:58506158:C:G	rs2550426	C	G	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr16	58904526	58904527	chr16:58904527:C:T	rs74620361	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr16	59122500	59122501	chr16:59122501:C:G	rs12922639	C	G	G	Sox3.mouse_HMG_2	4	1	+	3.3198400922600486	3.8386338856752165	TATCCATGTCAGAGATA
chr16	59122529	59122530	chr16:59122530:G:A	rs16960867	G	A	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr16	59170393	59170394	chr16:59170394:A:G	rs9941209	A	G	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr16	59170448	59170449	chr16:59170449:C:A	rs7203243	C	A	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr16	59182485	59182486	chr16:59182486:T:C	rs67585228	T	C	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr16	59336462	59336463	chr16:59336463:A:G	rs56176679	A	G	A	Sox3.mouse_HMG_2	11	1	-	6.7811818011909795	0.096807601730643	GCTCATTGTTATTGAGA
chr16	59570621	59570622	chr16:59570622:T:C	rs13338586	T	C	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr16	59808218	59808219	chr16:59808219:C:T	rs72787706	C	T	c	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr16	59840159	59840160	chr16:59840160:G:A	rs79445719	G	A	g	Sox3.mouse_HMG_2	7	1	+	3.0099051007568436	-3.6189163943312126	TGTAAATGGTATTGGAA
chr16	60182149	60182150	chr16:60182150:C:T	rs7195993	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr16	60485805	60485806	chr16:60485806:C:T	rs9930207	C	T	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr16	60645697	60645698	chr16:60645698:G:A	rs13336308	G	A	A	Sox3.mouse_HMG_2	15	1	+	3.1773782723351176	3.6111157235964586	AGTAAATTTCAGTGAGT
chr16	61382649	61382650	chr16:61382650:G:A	rs74456422	G	A	g	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr16	61721637	61721638	chr16:61721638:A:C	rs186136258	A	C	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr16	61927104	61927105	chr16:61927105:A:G	rs12597062	A	G	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr16	62001545	62001546	chr16:62001546:T:A	rs1469067281	T	A	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr16	62037618	62037619	chr16:62037619:C:G	rs9302540	C	G	G	Sox3.mouse_HMG_2	13	1	-	2.752814521438178	-3.634445517489034	CATTAATTTGAGTGAGA
chr16	62834266	62834267	chr16:62834267:C:T	rs16965221	C	T	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr16	63063102	63063103	chr16:63063103:G:C	rs7206149	G	C	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr16	63596255	63596256	chr16:63596256:G:T	rs1895512	G	T	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr16	63787217	63787218	chr16:63787218:A:G	chr16:63787218:A:G	A	G	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr16	63851835	63851836	chr16:63851836:G:A	rs4949082	G	A	G	Sox3.mouse_HMG_2	11	1	+	2.018241185106431	-2.553242943226853	GATGAAAGTCAGTGAAG
chr16	63937380	63937381	chr16:63937381:A:C	rs8046281	A	C	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr16	64186294	64186295	chr16:64186295:C:T	rs184773717	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.093182816163314	-3.9584556880229984	AGCCAATTTCAGTGACA
chr16	64250605	64250606	chr16:64250606:C:A	rs59753296	C	A	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr16	64295673	64295674	chr16:64295674:G:A	rs62039800	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr16	64363242	64363243	chr16:64363243:A:G	rs146413077	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr16	64397300	64397301	chr16:64397301:A:T	chr16:64397301:A:T	A	T	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr16	64654207	64654208	chr16:64654208:G:A	rs7191764	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr16	64822437	64822438	chr16:64822438:C:T	rs62044497	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr16	64920448	64920449	chr16:64920449:T:C	rs4967877	T	C	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr16	64983620	64983621	chr16:64983621:T:C	rs1025312	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr16	65156315	65156316	chr16:65156316:T:C	rs12932858	T	C	T	Sox3.mouse_HMG_2	5	1	-	5.841341002338373	-0.547940432039516	AGTCAATTTCATAGAAT
chr16	65225169	65225170	chr16:65225170:T:C	rs9934772	T	C	T	Sox3.mouse_HMG_2	4	1	-	4.149109569482394	-2.2401718648954945	AAACATTGTTATTGGTG
chr16	65404682	65404683	chr16:65404683:G:C	rs138892820	G	C	G	Sox3.mouse_HMG_2	9	1	-	7.1420606095143375	1.8507318925019767	TATCAATTCCAGTGTGA
chr16	65462415	65462416	chr16:65462416:C:T	rs9935666	C	T	C	Sox3.mouse_HMG_2	7	1	-	0.38255309463287807	-6.246268400455176	CACCAAGGTCAGTGGTG
chr16	65462439	65462440	chr16:65462440:T:C	rs145544881	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.8122614559456334	-4.577019978432256	CATCAACGGCATGGGTT
chr16	65743989	65743990	chr16:65743990:T:C	rs12447803	T	C	T	Sox3.mouse_HMG_2	7	1	+	1.6984770439615042	-3.8044532372813076	GATCAAATGCAGTGGCT
chr16	65944483	65944484	chr16:65944484:C:G	rs254351	C	G	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr16	66058654	66058655	chr16:66058655:G:A	rs1121926	G	A	A	Sox3.mouse_HMG_2	1	1	-	2.5599851259684865	2.580203103259131	TCTGAATGTCCTTGATT
chr16	66080002	66080003	chr16:66080003:T:C	rs151136299	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.3212750637959083	-5.068006370581982	ACACAATGTCTTTGAGG
chr16	66266287	66266288	chr16:66266288:C:G	rs2576483	C	G	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr16	66266292	66266293	chr16:66266293:A:C	rs893199	A	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr16	66315813	66315814	chr16:66315814:A:G	rs148148073	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr16	66403227	66403228	chr16:66403228:A:T	rs1063438	A	T	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr16	66487971	66487972	chr16:66487972:T:C	rs16956575	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr16	67226514	67226515	chr16:67226515:T:C	rs76561044	T	C	T	Sox3.mouse_HMG_2	11	1	-	2.8360258291361444	7.40750995746943	CATCAACTGCAATGATC
chr16	67564529	67564530	chr16:67564530:G:C	rs35482869	G	C	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr16	67805224	67805225	chr16:67805225:C:T	rs12448923	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr16	68646569	68646570	chr16:68646570:C:G	rs148274676	C	G	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr16	68849018	68849019	chr16:68849019:C:T	rs59559079	C	T	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr16	69396486	69396487	chr16:69396487:G:A	rs72797165	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr16	69410356	69410357	chr16:69410357:A:G	rs78157189	A	G	A	Sox3.mouse_HMG_2	11	1	-	1.8740736472709882	-4.8103005521893465	GGGTAATGACATTGAGG
chr16	69564753	69564754	chr16:69564754:T:A	rs62052821	T	A	T	Sox3.mouse_HMG_2	6	1	+	2.5997957810848558	-4.308279446708202	GCTCAATTTCATGGGAA
chr16	69687470	69687471	chr16:69687471:T:C	rs9888993	T	C	T	Sox3.mouse_HMG_2	10	1	-	4.977005066519115	-1.931749712796104	GGTTAATTTTATTTATG
chr16	69720704	69720705	chr16:69720705:G:A	rs2917674	G	A	A	Sox3.mouse_HMG_2	3	1	-	2.337058270291736	-2.5197976049304858	GTTCAATGTGATTGGCC
chr16	69762134	69762135	chr16:69762135:A:G	rs150210700	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr16	69844257	69844258	chr16:69844258:A:G	rs3790088	A	G	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr16	69849303	69849304	chr16:69849304:A:C	chr16:69849304:A:C	A	C	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr16	70161374	70161375	chr16:70161375:C:A	rs374268826	C	A	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr16	70496643	70496644	chr16:70496644:G:A	rs11641683	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr16	70682763	70682764	chr16:70682764:T:G	rs58623884	T	G	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr16	70731224	70731225	chr16:70731225:G:A	rs60028268	G	A	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr16	70803715	70803716	chr16:70803716:G:T	rs77069808	G	T	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr16	71338262	71338263	chr16:71338263:G:A	rs1424141	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr16	72000964	72000965	chr16:72000965:T:C	rs7185215	T	C	T	Sox3.mouse_HMG_2	8	1	+	4.363450624736958	3.109028658581289	AATAAATGTTATTGTGT
chr16	72673354	72673355	chr16:72673355:C:T	rs181294482	C	T	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr16	72673393	72673394	chr16:72673394:C:T	rs8062201	C	T	c	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr16	72769534	72769535	chr16:72769535:A:C	rs76967471	A	C	C	Sox3.mouse_HMG_2	1	1	+	2.3145698048679972	-0.4008717314759425	GATGTATTTTATTGGTT
chr16	72925067	72925068	chr16:72925068:C:T	rs12922127	C	T	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr16	72925085	72925086	chr16:72925086:A:G	rs11864105	A	G	G	Sox3.mouse_HMG_2	10	1	+	6.651175243283051	-0.2575795360321686	TGCCAATGCCAGTGATA
chr16	72962096	72962097	chr16:72962097:T:C	rs756718	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr16	72978387	72978388	chr16:72978388:T:C	rs12596810	T	C	T	Sox3.mouse_HMG_2	0	1	+	5.9025177011648955	6.387652715419002	TTTCATTTTCATTGATC
chr16	72985851	72985852	chr16:72985852:C:T	rs780850790	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr16	73029531	73029532	chr16:73029532:C:A	rs79902773	C	A	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr16	73053272	73053273	chr16:73053273:C:T	rs1204148454	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr16	73093823	73093824	chr16:73093824:C:T	rs62052380	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr16	73142835	73142836	chr16:73142836:C:T	chr16:73142836:C:T	C	T	C	Sox3.mouse_HMG_2	4	1	+	1.4440360055535224	1.4440360055535224	TGTCCATTTCATGGATG
chr16	73298847	73298848	chr16:73298848:G:A	rs184504674	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr16	73298857	73298858	chr16:73298858:G:T	rs7206112	G	T	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr16	73485188	73485189	chr16:73485189:T:C	rs8044612	T	C	t	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr16	73543407	73543408	chr16:73543408:T:A	rs12444022	T	A	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr16	73568675	73568676	chr16:73568676:C:T	rs137871707	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr16	74170462	74170463	chr16:74170463:C:T	rs7201013	C	T	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr16	74410184	74410185	chr16:74410185:T:A	rs72487951	T	A	.	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr16	74562284	74562285	chr16:74562285:T:A	rs8052389	T	A	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr16	74562290	74562291	chr16:74562291:G:A	rs8046158	G	A	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr16	74578131	74578132	chr16:74578132:G:C	rs8056718	G	C	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr16	74632735	74632736	chr16:74632736:G:C	rs4072450	G	C	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr16	74708559	74708560	chr16:74708560:A:G	rs73614621	A	G	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr16	74708571	74708572	chr16:74708572:T:C	rs73614623	T	C	T	Sox3.mouse_HMG_2	6	1	+	1.587209972661721	-4.80207146171617	AATCGATGTCACTGAAG
chr16	74827674	74827675	chr16:74827675:A:G	rs72794763	A	G	A	Sox3.mouse_HMG_2	6	1	-	4.956145985161065	-1.4331354492168262	TCTAAATGTTATTGACA
chr16	75196331	75196332	chr16:75196332:C:T	rs1559362	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr16	75212520	75212521	chr16:75212521:C:T	rs9927309	C	T	c	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr16	75310134	75310135	chr16:75310135:T:C	rs145212247	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr16	75312889	75312890	chr16:75312890:C:G	rs1862705	C	G	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr16	75337845	75337846	chr16:75337846:C:G	rs3863445	C	G	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr16	75403089	75403090	chr16:75403090:G:A	rs12149472	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr16	75403104	75403105	chr16:75403105:C:T	rs117457080	C	T	C	Sox3.mouse_HMG_2	16	1	-	1.3663304842555746	1.1547560577703238	TTTAAATGTCCTTGATG
chr16	75434102	75434103	chr16:75434103:T:C	chr16:75434103:T:C	T	C	T	Sox3.mouse_HMG_2	2	1	+	2.2615797014253056	-4.1053176051004385	GCTCAATGTTAACGAGT
chr16	75734059	75734060	chr16:75734060:G:T	rs540170691	G	T	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr16	75792992	75792993	chr16:75792993:C:T	rs150085746	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr16	75864415	75864416	chr16:75864416:A:G	rs4349174	A	G	a	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr16	76345477	76345478	chr16:76345478:T:G	rs61368169	T	G	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr16	76345523	76345524	chr16:76345524:C:T	rs78786642	C	T	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr16	76446674	76446675	chr16:76446675:G:A	rs9930895	G	A	G	Sox3.mouse_HMG_2	7	1	+	5.217000949833074	-1.4118205452549841	CAACAATGTCCTTGAGA
chr16	76462233	76462234	chr16:76462234:C:T	rs34782687	C	T	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr16	76483492	76483493	chr16:76483493:T:G	rs556221500	T	G	T	Sox3.mouse_HMG_2	11	1	-	8.746284290617464	8.013916396904238	GCTCAATGTTAATGAAT
chr16	76487630	76487631	chr16:76487631:T:C	rs12926636	T	C	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr16	76823167	76823168	chr16:76823168:C:G	rs144442257	C	G	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr16	76849059	76849060	chr16:76849060:C:G	rs74443760	C	G	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr16	77048635	77048636	chr16:77048636:A:C	rs4888590	A	C	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr16	77228045	77228046	chr16:77228046:C:G	rs12449219	C	G	C	Sox3.mouse_HMG_2	3	1	+	4.413806538666173	-1.6367127712231218	ACTCAAGTCTATTGATC
chr16	77331685	77331686	chr16:77331686:C:G	rs1981983	C	G	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr16	77393185	77393186	chr16:77393186:T:G	rs12373077	T	G	G	Sox3.mouse_HMG_2	6	1	+	7.205529906850203	0.2974546790571457	GTTCAATGTCATGGAGT
chr16	77421631	77421632	chr16:77421632:A:G	rs919374	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr16	77431138	77431139	chr16:77431139:C:G	rs1366545	C	G	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr16	77488978	77488979	chr16:77488979:C:G	rs156982	C	G	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr16	77557918	77557919	chr16:77557919:T:G	rs282994	T	G	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr16	77684030	77684031	chr16:77684031:C:T	rs12596953	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr16	77684048	77684049	chr16:77684049:C:T	rs118111074	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr16	77703489	77703490	chr16:77703490:G:C	rs8062898	G	C	C	Sox3.mouse_HMG_2	3	1	-	2.2575915915138802	-3.792927718375418	TATCAAAGGCAATGAAT
chr16	77780281	77780282	chr16:77780282:T:C	rs12927467	T	C	t	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr16	77782306	77782307	chr16:77782307:G:A	rs4888684	G	A	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr16	77951922	77951923	chr16:77951923:T:C	rs369572747	T	C	T	Sox3.mouse_HMG_2	6	1	+	2.444781684354621	-3.9444997500232706	ACTCAATTCCTTTGAAA
chr16	77971450	77971451	chr16:77971451:T:G	rs537019003	T	G	T	Sox3.mouse_HMG_2	14	1	-	6.423621967543368	0.3910933499547238	CTTCAATGTTATTTAAC
chr16	78052278	78052279	chr16:78052279:A:C	rs8062376	A	C	a	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr16	78094416	78094417	chr16:78094417:A:G	rs1073111	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr16	78179857	78179858	chr16:78179858:C:T	rs885734	C	T	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr16	78198487	78198488	chr16:78198488:G:A	rs889418	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr16	78280970	78280971	chr16:78280971:C:T	rs75882098	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr16	78286089	78286090	chr16:78286090:A:T	rs56075728	A	T	a	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr16	78365285	78365286	chr16:78365286:C:T	rs4888788	C	T	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr16	78365290	78365291	chr16:78365291:G:A	rs13339056	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr16	78389258	78389259	chr16:78389259:C:T	rs75686631	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr16	78432860	78432861	chr16:78432861:A:C	rs3764342	A	C	A	Sox3.mouse_HMG_2	9	1	-	1.9811882969553032	-4.002792962929017	GGACAATGTTATTACTG
chr16	78488599	78488600	chr16:78488600:G:C	chr16:78488600:G:C	G	C	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr16	78683691	78683692	chr16:78683692:A:G	rs7193282	A	G	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr16	78734547	78734548	chr16:78734548:C:T	rs191340137	C	T	C	Sox3.mouse_HMG_2	6	1	-	3.0039217617669047	3.0039217617669047	TCTCAAGTTCAGTGAGG
chr16	78735724	78735725	chr16:78735725:A:G	rs8046392	A	G	A	Sox3.mouse_HMG_2	11	1	+	3.1054425010678313	7.676926629401117	GTTCTATGTCAATGATG
chr16	78778406	78778407	chr16:78778407:G:T	rs16948450	G	T	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr16	78912489	78912490	chr16:78912490:A:G	rs16948847	A	G	A	Sox3.mouse_HMG_2	5	1	+	7.892533355425438	1.503251921047548	TGTCAATTGCATTGCTG
chr16	78947638	78947639	chr16:78947639:G:A	rs74032448	G	A	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr16	78955303	78955304	chr16:78955304:G:C	rs11639533	G	C	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr16	78955331	78955332	chr16:78955332:C:A	chr16:78955332:C:A	C	A	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr16	78958036	78958037	chr16:78958037:G:A	rs79548483	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr16	79025228	79025229	chr16:79025229:C:G	rs905781	C	G	c	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr16	79054065	79054066	chr16:79054066:C:T	rs72795627	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr16	79078040	79078041	chr16:79078041:C:G	rs12716866	C	G	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr16	79105999	79106000	chr16:79106000:T:A	rs553076343	T	A	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr16	79165212	79165213	chr16:79165213:T:C	rs1110544	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.932736348816332	-1.4565450855615603	TTACAATGCTAGTGACC
chr16	79166580	79166581	chr16:79166581:A:G	rs11150141	A	G	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr16	79261795	79261796	chr16:79261796:C:G	chr16:79261796:C:G	C	G	C	Sox3.mouse_HMG_2	9	1	+	6.558945524319347	1.2676168073069853	AGACAATTTCATTGACA
chr16	79327303	79327304	chr16:79327304:C:T	rs1876763	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr16	79453174	79453175	chr16:79453175:C:A	rs73581316	C	A	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr16	79470133	79470134	chr16:79470134:G:C	rs532814172	G	C	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr16	79489395	79489396	chr16:79489396:T:A	rs2549502	T	A	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr16	79492327	79492328	chr16:79492328:A:G	rs80341802	A	G	A	Sox3.mouse_HMG_2	9	1	-	5.148552496776312	4.4558999539043525	TATTAATTATAGTGTTG
chr16	79596010	79596011	chr16:79596011:G:C	rs73587068	G	C	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr16	79596031	79596032	chr16:79596032:G:A	rs73587069	G	A	A	Sox3.mouse_HMG_2	1	1	+	4.239860955230238	6.246248897249696	AGTCAACTTTAGTGAAA
chr16	79759349	79759350	chr16:79759350:G:A	rs115188758	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr16	79759363	79759364	chr16:79759364:A:C	rs16951312	A	C	A	Sox3.mouse_HMG_2	16	1	-	5.819359329867455	5.455637640233509	CATCAATGTTTCTGATT
chr16	79789489	79789490	chr16:79789490:C:G	rs12149226	C	G	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr16	79800346	79800347	chr16:79800347:T:C	rs4889034	T	C	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr16	79800363	79800364	chr16:79800364:G:A	rs4889035	G	A	A	Sox3.mouse_HMG_2	16	1	+	3.269811814174598	3.058237387689348	GCTCAGTTTCAGTGACG
chr16	79944302	79944303	chr16:79944303:A:G	rs4445915	A	G	G	Sox3.mouse_HMG_2	4	1	-	0.6213971358523414	0.6213971358523414	TATCTAAGGCAGTGATC
chr16	79985507	79985508	chr16:79985508:C:G	rs186531386	C	G	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr16	80114137	80114138	chr16:80114138:C:T	rs62050833	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr16	80129779	80129780	chr16:80129780:T:C	rs7202741	T	C	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr16	80265274	80265275	chr16:80265275:T:C	rs117041588	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.702429208064725	-4.686852226313164	TCTCTATGTCTTTGATT
chr16	80265293	80265294	chr16:80265294:T:G	rs13336279	T	G	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr16	80299644	80299645	chr16:80299645:C:G	rs1094134	C	G	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr16	80299692	80299693	chr16:80299693:G:A	rs11646502	G	A	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr16	80307455	80307456	chr16:80307456:C:T	rs72816456	C	T	C	Sox3.mouse_HMG_2	8	1	-	10.641805903873989	9.42301551912949	CATAAATGGCATTGATG
chr16	80330369	80330370	chr16:80330370:T:C	rs1829381	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr16	80348789	80348790	chr16:80348790:T:C	rs76378498	T	C	T	Sox3.mouse_HMG_2	1	1	-	2.969684108361861	0.9632961663424009	CATCAATTTTATGAAAA
chr16	80362428	80362429	chr16:80362429:A:T	rs13339097	A	T	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr16	80485981	80485982	chr16:80485982:G:A	rs10871386	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr16	80512075	80512076	chr16:80512076:A:G	rs11150289	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr16	80526761	80526762	chr16:80526762:T:C	rs75740027	T	C	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr16	80526774	80526775	chr16:80526775:G:C	rs7189437	G	C	G	Sox3.mouse_HMG_2	16	1	-	2.779481983386348	4.018753343412853	ATTCAATTTCATTTAGC
chr16	80528121	80528122	chr16:80528122:C:T	rs13333303	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr16	80719843	80719844	chr16:80719844:A:G	rs3100180	A	G	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr16	80808033	80808034	chr16:80808034:T:C	rs12446476	T	C	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr16	80824497	80824498	chr16:80824498:A:G	rs148918736	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr16	80862175	80862176	chr16:80862176:G:T	rs74871482	G	T	G	Sox3.mouse_HMG_2	7	1	+	3.0174270444557143	1.8915358306104686	ATTCAAAGTTAGTGTTT
chr16	81004462	81004463	chr16:81004463:G:C	rs7202452	G	C	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr16	81004500	81004501	chr16:81004501:A:G	rs2602419	A	G	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr16	81080413	81080414	chr16:81080414:G:A	rs16954580	G	A	G	Sox3.mouse_HMG_2	7	1	+	9.685429307378232	3.0566078122901774	CATCAATGACAGTGGAT
chr16	81136387	81136388	chr16:81136388:C:G	rs12934839	C	G	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr16	81139031	81139032	chr16:81139032:G:C	rs12599723	G	C	G	Sox3.mouse_HMG_2	3	1	-	6.019452049535041	-0.031067260354254556	GCTCAATGCCAGTAATC
chr16	81166618	81166619	chr16:81166619:A:G	rs7194973	A	G	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr16	81177308	81177309	chr16:81177309:T:G	rs8049408	T	G	T	Sox3.mouse_HMG_2	14	1	-	10.168766669002531	4.136238051413884	CAACAATTTCATTGACG
chr16	81535667	81535668	chr16:81535668:G:A	rs16955523	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr16	81540026	81540027	chr16:81540027:C:T	rs2168798	C	T	C	Sox3.mouse_HMG_2	16	1	+	1.5564959258939783	3.1594889755544293	AAACGATGGCAGTGAAC
chr16	81672925	81672926	chr16:81672926:G:A	rs13334224	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr16	81752633	81752634	chr16:81752634:C:T	rs73604560	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr16	81826595	81826596	chr16:81826596:C:G	rs76424446	C	G	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr16	81838818	81838819	chr16:81838819:T:C	rs73590821	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.7620575082977494	-4.6272239260801395	CATCTATGTTATTTACA
chr16	81879716	81879717	chr16:81879717:G:C	rs76883178	G	C	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr16	81943099	81943100	chr16:81943100:T:G	rs4640176	T	G	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr16	82005458	82005459	chr16:82005459:G:A	rs74029340	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr16	82124673	82124674	chr16:82124674:C:A	rs6564969	C	A	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr16	82188001	82188002	chr16:82188002:C:G	rs10514534	C	G	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr16	82188022	82188023	chr16:82188023:A:G	rs2911407	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.423708251934535	-3.9655731824433555	TGTCAATGTCACTGTGG
chr16	82197966	82197967	chr16:82197967:C:G	rs142415206	C	G	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr16	82197973	82197974	chr16:82197974:A:G	rs2911412	A	G	A	Sox3.mouse_HMG_2	11	1	-	8.427201046064111	1.7428268466037753	CCTCAATGCCATTGTAT
chr16	82360752	82360753	chr16:82360753:C:T	rs74922812	C	T	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr16	82594816	82594817	chr16:82594817:G:A	rs16957828	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr16	82701787	82701788	chr16:82701788:G:A	rs757381757	G	A	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr16	83070693	83070694	chr16:83070694:T:C	rs4783320	T	C	T	Sox3.mouse_HMG_2	11	1	+	10.199181292031172	3.514807092570835	CTTCAATTACATTGAAG
chr16	83070701	83070702	chr16:83070702:A:C	rs8063680	A	C	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr16	83215836	83215837	chr16:83215837:A:G	rs8046313	A	G	a	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr16	83390767	83390768	chr16:83390768:G:T	rs1424176	G	T	T	Sox3.mouse_HMG_2	0	1	-	6.894110204664976	5.5022514284865025	CAGCAATGTGAGTGATT
chr16	83390774	83390775	chr16:83390775:T:A	rs1424177	T	A	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr16	83402772	83402773	chr16:83402773:A:T	rs16960371	A	T	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr16	83455673	83455674	chr16:83455674:C:G	rs7188758	C	G	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr16	83487764	83487765	chr16:83487765:G:A	rs7201978	G	A	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr16	83494416	83494417	chr16:83494417:A:G	rs1387370	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr16	83498730	83498731	chr16:83498731:G:A	rs4378602	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr16	83563573	83563574	chr16:83563574:G:A	rs12598614	G	A	G	Sox3.mouse_HMG_2	9	1	+	5.127893493264997	5.127893493264997	AATCAATGTGCTTGATT
chr16	83672043	83672044	chr16:83672044:T:A	rs8046499	T	A	T	Sox3.mouse_HMG_2	6	1	+	10.815036524271335	3.906961296478276	GATCAATTGTATTTATA
chr16	83750604	83750605	chr16:83750605:C:A	rs411454	C	A	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr16	83769291	83769292	chr16:83769292:T:A	rs78245379	T	A	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr16	83786293	83786294	chr16:83786294:T:C	rs692612	T	C	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr16	83833494	83833495	chr16:83833495:A:G	rs76361064	A	G	A	Sox3.mouse_HMG_2	1	1	+	5.52190936779253	3.515521425773072	TATCAATGGGATTGCTA
chr16	83833498	83833499	chr16:83833499:A:G	rs75678411	A	G	A	Sox3.mouse_HMG_2	5	1	+	5.52190936779253	-0.8673720665853593	TATCAATGGGATTGCTA
chr16	83842565	83842566	chr16:83842566:T:C	rs366495	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr16	83936277	83936278	chr16:83936278:G:A	rs9889086	G	A	a	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr16	83947067	83947068	chr16:83947068:A:G	rs751142916	A	G	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr16	84008284	84008285	chr16:84008285:G:A	rs74032376	G	A	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr16	84016753	84016754	chr16:84016754:A:T	rs13380582	A	T	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr16	84096680	84096681	chr16:84096681:C:G	rs8049209	C	G	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr16	84141621	84141622	chr16:84141622:G:A	rs7184373	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr16	84172778	84172779	chr16:84172779:G:A	rs1035558	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr16	84261226	84261227	chr16:84261227:C:G	rs117811752	C	G	C	Sox3.mouse_HMG_2	15	1	-	2.325415466950326	1.2827431941645562	CTACAATCTTAGTGAGG
chr16	84302970	84302971	chr16:84302971:A:G	rs12599383	A	G	A	Sox3.mouse_HMG_2	6	1	-	7.0637019326138795	0.6744204982359883	CAACAATGTCATTGTCA
chr16	84406218	84406219	chr16:84406219:C:G	rs766065257	C	G	.	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr16	84467284	84467285	chr16:84467285:T:C	rs11643494	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr16	84508909	84508910	chr16:84508910:C:T	rs35473398	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr16	84518018	84518019	chr16:84518019:C:T	rs28473656	C	T	C	Sox3.mouse_HMG_2	7	1	-	3.228053335494539	-3.400768159593518	CCTCAATGACAGCGAGA
chr16	84518020	84518021	chr16:84518021:T:C	rs7203969	T	C	C	Sox3.mouse_HMG_2	5	1	-	3.228053335494539	-3.16122809888335	CCTCAATGACAGCGAGA
chr16	84800314	84800315	chr16:84800315:G:A	rs2641692	G	A	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr16	84800329	84800330	chr16:84800330:G:A	rs2641693	G	A	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr16	84826505	84826506	chr16:84826506:G:C	rs72799546	G	C	G	Sox3.mouse_HMG_2	6	1	+	5.615569685537211	6.134363478952378	CCTCAAGGGCATTGAAG
chr16	84826533	84826534	chr16:84826534:G:A	rs11645545	G	A	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr16	84884298	84884299	chr16:84884299:A:G	rs57004720	A	G	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr16	84922205	84922206	chr16:84922206:A:G	rs9935409	A	G	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr16	84968461	84968462	chr16:84968462:A:G	rs6564086	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr16	84968479	84968480	chr16:84968480:A:G	rs112022239	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.65721726111192	-1.7320641732659694	CATCAACGCCATTGGGG
chr16	84968719	84968720	chr16:84968720:A:G	rs16975038	A	G	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr16	85057261	85057262	chr16:85057262:G:A	rs9940034	G	A	G	Sox3.mouse_HMG_2	13	1	+	4.029643024979149	-2.0219954792071637	GATGCATTTTATTGATC
chr16	85149354	85149355	chr16:85149355:G:T	rs7197468	G	T	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr16	85167275	85167276	chr16:85167276:A:G	rs4360920	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr16	85168363	85168364	chr16:85168364:C:T	rs4636894	C	T	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr16	85200621	85200622	chr16:85200622:G:A	rs115786682	G	A	G	Sox3.mouse_HMG_2	9	1	-	4.040766331873714	4.733418874745674	ATTCATTGTCAGTGAAT
chr16	85220552	85220553	chr16:85220553:G:A	rs555303892	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr16	85234691	85234692	chr16:85234692:T:C	rs112970434	T	C	T	Sox3.mouse_HMG_2	10	1	-	0.5840412184768204	-6.3247135608384	GGTCAAGGGCAGTGTGA
chr16	85310421	85310422	chr16:85310422:T:A	chr16:85310422:T:A	T	A	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr16	85414331	85414332	chr16:85414332:A:G	rs6564118	A	G	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr16	85452682	85452683	chr16:85452683:C:G	rs4782704	C	G	C	Sox3.mouse_HMG_2	11	1	-	4.346612693924773	-0.9572393281217381	CCTGAATTTCAGTGAGG
chr16	85535703	85535704	chr16:85535704:A:T	rs116478524	A	T	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr16	85578285	85578286	chr16:85578286:C:T	rs12102555	C	T	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr16	85579010	85579011	chr16:85579011:A:G	rs9937814	A	G	A	Sox3.mouse_HMG_2	5	1	+	8.289268348026674	1.8999869136487861	AATCAATGTCAGTGGGC
chr16	85614267	85614268	chr16:85614268:C:A	rs567147843	C	A	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr16	85846732	85846733	chr16:85846733:G:A	rs7200652	G	A	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr16	85935067	85935068	chr16:85935068:G:A	rs439885	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr16	85985480	85985481	chr16:85985481:T:A	rs13330176	T	A	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr16	85986657	85986658	chr16:85986658:C:G	chr16:85986658:C:G	C	G	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr16	86028064	86028065	chr16:86028065:A:G	rs28395189	A	G	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr16	86048782	86048783	chr16:86048783:A:G	rs35781150	A	G	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr16	86086473	86086474	chr16:86086474:A:G	rs12918215	A	G	A	Sox3.mouse_HMG_2	10	1	-	2.549873588836326	2.549873588836326	CATCAATGCCTGAGATA
chr16	86194358	86194359	chr16:86194359:A:T	rs276975	A	T	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr16	86338217	86338218	chr16:86338218:T:C	rs2581300	T	C	t	Sox3.mouse_HMG_2	6	1	+	1.2633518187277575	-5.125929615650132	GGACAATGCTAGTCACG
chr16	86338227	86338228	chr16:86338228:G:A	rs12926258	G	A	g	Sox3.mouse_HMG_2	16	1	+	1.2633518187277575	1.0517773922425067	GGACAATGCTAGTCACG
chr16	86356353	86356354	chr16:86356354:C:T	rs1728365	C	T	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr16	86520330	86520331	chr16:86520331:T:C	rs184014342	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr16	86520339	86520340	chr16:86520340:T:C	rs113715640	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr16	86586921	86586922	chr16:86586922:A:T	rs7192043	A	T	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr16	86692503	86692504	chr16:86692504:A:G	rs9889093	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr16	86733843	86733844	chr16:86733844:A:T	rs80087248	A	T	A	Sox3.mouse_HMG_2	4	1	+	2.354937779808748	-4.553137447984308	AAGCAATTCTAGTCATG
chr16	86733853	86733854	chr16:86733854:A:G	rs79504021	A	G	A	Sox3.mouse_HMG_2	14	1	+	2.354937779808748	-0.963128489962853	AAGCAATTCTAGTCATG
chr16	86740826	86740827	chr16:86740827:G:A	rs1899882	G	A	A	Sox3.mouse_HMG_2	3	1	-	2.0262987529737075	-2.830557122248515	ATTCATTTCCATTGGTT
chr16	86757886	86757887	chr16:86757887:A:G	rs299953	A	G	G	Sox3.mouse_HMG_2	15	1	-	1.7447276018520523	-2.035071815653744	CATCACTTTTAATGGTG
chr16	86793921	86793922	chr16:86793922:G:A	rs8055182	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr16	86793938	86793939	chr16:86793939:T:C	rs147720058	T	C	T	Sox3.mouse_HMG_2	12	1	+	5.781688672910845	-0.2692784650199714	CATCAATCTTAGTGGAT
chr16	86809538	86809539	chr16:86809539:T:C	rs192730066	T	C	T	Sox3.mouse_HMG_2	12	1	+	4.852410696861666	-1.1985564410691505	GGTCAAATGCATTGGTT
chr16	86837008	86837009	chr16:86837009:A:G	rs60237287	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr16	86885216	86885217	chr16:86885217:G:C	rs58607576	G	C	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr16	86914195	86914196	chr16:86914196:T:C	rs28517734	T	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr16	86935489	86935490	chr16:86935490:C:T	rs931893358	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr16	86942956	86942957	chr16:86942957:T:C	rs4575542	T	C	T	Sox3.mouse_HMG_2	11	1	+	7.75279037870689	1.0684161792465536	AATCCATGTCATTGAAG
chr16	86948148	86948149	chr16:86948149:A:G	rs77099230	A	G	A	Sox3.mouse_HMG_2	12	1	-	2.9723262271287076	-3.0786409108021084	GCTCAATTCCTGTGAAG
chr16	87015557	87015558	chr16:87015558:G:C	rs16942474	G	C	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr16	87150145	87150146	chr16:87150146:T:C	rs62040432	T	C	C	Sox3.mouse_HMG_2	10	1	-	1.7105669811336115	-5.19818779818161	GAGCAAATGCATTGAGA
chr16	87230927	87230928	chr16:87230928:G:A	rs4843231	G	A	G	Sox3.mouse_HMG_2	13	1	+	3.8157483874932723	-2.2358901166930396	GGACAATTTTATGGAGG
chr16	87265725	87265726	chr16:87265726:T:C	rs2059883	T	C	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr16	87327786	87327787	chr16:87327787:G:A	rs2278270	G	A	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr16	87409400	87409401	chr16:87409401:T:C	rs117086985	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr16	87477387	87477388	chr16:87477388:C:T	rs118179234	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr16	87571448	87571449	chr16:87571449:A:G	rs78836475	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr16	87717579	87717580	chr16:87717580:C:A	rs8054180	C	A	A	Sox3.mouse_HMG_2	9	1	+	7.050814010513368	1.759485293501008	GTGCAATTCCAGTGATG
chr16	87816063	87816064	chr16:87816064:T:C	rs4843706	T	C	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr16	88025335	88025336	chr16:88025336:C:T	rs140595438	C	T	c	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr16	88131145	88131146	chr16:88131146:A:G	rs75435628	A	G	-	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr16	88210959	88210960	chr16:88210960:C:T	rs79490713	C	T	-	Sox3.mouse_HMG_2	16	1	+	1.6217806648739108	3.224773714534362	GCTCATTGGTATTGGGC
chr16	88268314	88268315	chr16:88268315:A:G	rs59842012	A	G	-	Sox3.mouse_HMG_2	15	1	-	8.741765121495913	4.961965703990116	AGTCAATGTTGTTGATG
chr16	88344968	88344969	chr16:88344969:T:C	rs28593290	T	C	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr16	88352201	88352202	chr16:88352202:C:T	rs565731568	C	T	c	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr16	88366773	88366774	chr16:88366774:G:A	rs1031440937	G	A	-	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr16	88372313	88372314	chr16:88372314:C:A	rs1017447238	C	A	-	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr16	88568901	88568902	chr16:88568902:A:G	rs11646848	A	G	G	Sox3.mouse_HMG_2	9	1	-	4.092504730762083	3.399852187890123	AAACAATGTTAGTTAAA
chr16	88725638	88725639	chr16:88725639:A:G	rs4782430	A	G	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr16	88730249	88730250	chr16:88730250:A:G	rs9972645	A	G	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr16	88760145	88760146	chr16:88760146:C:T	rs536669610	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr16	88770681	88770682	chr16:88770682:C:G	rs116225637	C	G	C	Sox3.mouse_HMG_2	8	1	-	3.5522423262693943	3.1114582931179378	AGTCACTGGCAGTGAAG
chr16	89159200	89159201	chr16:89159201:T:G	rs72819325	T	G	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr16	89187538	89187539	chr16:89187539:C:T	rs376519064	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr16	89375841	89375842	chr16:89375842:C:G	rs3102338	C	G	C	Sox3.mouse_HMG_2	0	1	-	2.395037703408225	2.090404185884037	GGTTTATGGTATTGAGT
chr16	89548924	89548925	chr16:89548925:C:T	rs67643661	C	T	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr16	89689494	89689495	chr16:89689495:A:G	rs258322	A	G	G	Sox3.mouse_HMG_2	6	1	-	4.875668418482125	-1.5136130158957648	GTACAATGTTTGTGATA
chr17	142788	142789	chr17:142789:T:A	rs905159635	T	A	.	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr17	148163	148164	chr17:148164:C:T	rs9286394	C	T	.	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr17	253424	253425	chr17:253425:T:A	rs7214608	T	A	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr17	253440	253441	chr17:253441:C:T	rs28747076	C	T	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr17	316628	316629	chr17:316629:C:G	rs112818877	C	G	-	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr17	731446	731447	chr17:731447:T:C	rs12943242	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr17	928426	928427	chr17:928427:C:T	rs2360111	C	T	c	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr17	1057908	1057909	chr17:1057909:T:A	rs9912632	T	A	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr17	1157115	1157116	chr17:1157116:C:T	rs34106175	C	T	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr17	1157126	1157127	chr17:1157127:T:G	rs2099916	T	G	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr17	1183013	1183014	chr17:1183014:G:C	rs12051626	G	C	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr17	1391600	1391601	chr17:1391601:A:C	rs2131431	A	C	A	Sox3.mouse_HMG_2	15	1	-	2.6781836050165717	-0.05894353970345374	TGTTAATGCTAGTCATG
chr17	1459985	1459986	chr17:1459986:T:G	rs7211083	T	G	T	Sox3.mouse_HMG_2	0	1	-	5.668080897687845	7.059939673866318	AATCAATGTTAGCGGTC
chr17	1669492	1669493	chr17:1669493:A:G	rs765453072	A	G	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr17	2124198	2124199	chr17:2124199:G:T	rs16951935	G	T	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr17	2136438	2136439	chr17:2136439:T:C	rs9909515	T	C	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr17	2194288	2194289	chr17:2194289:T:G	rs1002135	T	G	G	Sox3.mouse_HMG_2	6	1	+	2.774977253575089	-4.133097974217969	ACTCAATGTTCTTGGAT
chr17	2736067	2736068	chr17:2736068:G:A	rs16952349	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr17	2885878	2885879	chr17:2885879:C:A	rs117515699	C	A	C	Sox3.mouse_HMG_2	7	1	-	6.352469266203685	5.226578052358442	CATCAATGTCAATAATG
chr17	2891561	2891562	chr17:2891562:A:G	rs9907411	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr17	3016166	3016167	chr17:3016167:C:T	rs73298992	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr17	3448041	3448042	chr17:3448042:C:T	rs4790484	C	T	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr17	3515163	3515164	chr17:3515164:A:G	rs4790506	A	G	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr17	3560895	3560896	chr17:3560896:G:A	rs60292929	G	A	g	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr17	3662937	3662938	chr17:3662938:C:T	rs7093	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr17	3935422	3935423	chr17:3935423:T:C	rs8068346	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.298380692074181	-3.09090074230371	CCTCGATGCCAGTGGTG
chr17	4163224	4163225	chr17:4163225:T:C	rs4790580	T	C	C	Sox3.mouse_HMG_2	12	1	+	1.5645101014893248	-4.486457036441491	CTTGATTGGTAGTGATT
chr17	4304593	4304594	chr17:4304594:A:C	rs148560560	A	C	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr17	4314186	4314187	chr17:4314187:G:C	rs72829386	G	C	G	Sox3.mouse_HMG_2	4	1	-	1.3316677145985294	1.8504615080136964	GGTCCGTTTTAGTGATA
chr17	4314204	4314205	chr17:4314205:G:C	rs8073862	G	C	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr17	4405781	4405782	chr17:4405782:C:T	rs35074337	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr17	4544263	4544264	chr17:4544264:G:C	rs9901991	G	C	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr17	4679727	4679728	chr17:4679728:A:G	rs4790674	A	G	A	Sox3.mouse_HMG_2	8	1	-	3.1785657731409334	1.9241438069852657	CATCGATTTTATTAAAG
chr17	4722790	4722791	chr17:4722791:C:T	rs67966027	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr17	4904699	4904700	chr17:4904700:C:T	rs2661697	C	T	t	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr17	5238590	5238591	chr17:5238591:G:A	rs11869522	G	A	G	Sox3.mouse_HMG_2	0	1	-	1.9596190926033188	1.4744840783492101	CCTCAATGTCATGGGGC
chr17	5365836	5365837	chr17:5365837:G:A	rs8081520	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr17	5543867	5543868	chr17:5543868:C:T	rs34031227	C	T	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr17	5631724	5631725	chr17:5631725:G:A	rs2255534	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr17	5631744	5631745	chr17:5631745:A:G	rs2175826	A	G	G	Sox3.mouse_HMG_2	8	1	+	1.4309670913904842	2.6497574761349805	GATCAAAGACTGTGATG
chr17	5632223	5632224	chr17:5632224:T:C	rs2670645	T	C	T	Sox3.mouse_HMG_2	12	1	+	2.694016134907354	-3.356951003023462	AATGGATGGCAGTGATT
chr17	5662142	5662143	chr17:5662143:G:A	rs7221898	G	A	A	Sox3.mouse_HMG_2	2	1	-	1.2943649398019286	7.661262246327675	GACCATTGCTATTGGTA
chr17	5664161	5664162	chr17:5664162:C:A	rs7214605	C	A	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr17	5667521	5667522	chr17:5667522:A:G	rs2733370	A	G	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr17	5824801	5824802	chr17:5824802:C:T	rs9907625	C	T	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr17	5830033	5830034	chr17:5830034:T:C	rs9912593	T	C	c	Sox3.mouse_HMG_2	10	1	-	1.5272070113715377	-5.381547767943682	CAACAAAGTCAGTGTTC
chr17	5842706	5842707	chr17:5842707:G:A	rs4506957	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr17	5907094	5907095	chr17:5907095:C:T	rs8080397	C	T	C	Sox3.mouse_HMG_2	1	1	-	1.4680380822486216	3.4744260242680785	GGGCAGTGATATTGAAG
chr17	6101318	6101319	chr17:6101319:T:C	rs4362439	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr17	6105736	6105737	chr17:6105737:C:T	rs747522493	C	T	C	Sox3.mouse_HMG_2	0	1	+	4.5311170498537665	4.045982035599658	CATCAACGTCAGTGGGG
chr17	6160451	6160452	chr17:6160452:G:A	rs139579510	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr17	6215847	6215848	chr17:6215848:A:G	rs35290744	A	G	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr17	6215889	6215890	chr17:6215890:T:C	rs34719797	T	C	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr17	6232720	6232721	chr17:6232721:A:G	rs8078484	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr17	6240626	6240627	chr17:6240627:G:A	rs575093873	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr17	6386154	6386155	chr17:6386155:C:T	rs11078625	C	T	A	Sox3.mouse_HMG_2	3	1	+	0.08534252813261449	-4.771513347089608	CTTCAAAGCCAGTGCTG
chr17	6413241	6413242	chr17:6413242:A:G	rs56161371	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr17	6559467	6559468	chr17:6559468:A:T	rs190960858	A	T	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr17	6566184	6566185	chr17:6566185:C:T	rs4796513	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr17	6750048	6750049	chr17:6750049:T:C	rs2005153	T	C	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr17	6753406	6753407	chr17:6753407:A:G	rs1983179	A	G	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr17	6753430	6753431	chr17:6753431:G:A	rs76444677	G	A	G	Sox3.mouse_HMG_2	11	1	+	4.454772271060439	-0.11671185727284479	GATTAATAATAGTGATG
chr17	6753454	6753455	chr17:6753455:C:T	rs1983180	C	T	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr17	7026232	7026233	chr17:7026233:T:C	rs4993974	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.519842641806115	-2.8694387925717746	CTTCAATAGCAGTGGTG
chr17	7208891	7208892	chr17:7208892:C:T	rs73976745	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr17	7208930	7208931	chr17:7208931:C:G	rs72837699	C	G	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr17	7367034	7367035	chr17:7367035:C:T	rs11655314	C	T	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr17	7548526	7548527	chr17:7548527:C:T	rs62059803	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr17	7552616	7552617	chr17:7552617:T:C	rs4968208	T	C	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr17	7745884	7745885	chr17:7745885:C:A	rs138368767	C	A	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr17	8322449	8322450	chr17:8322450:A:G	rs1045172	A	G	A	Sox3.mouse_HMG_2	15	1	+	1.3026316110914888	0.8688941598301475	TGTCCATGACATTGGAG
chr17	8412853	8412854	chr17:8412854:C:A	rs9895315	C	A	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr17	8613946	8613947	chr17:8613947:T:C	rs11652442	T	C	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr17	8806160	8806161	chr17:8806161:G:A	rs60422945	G	A	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr17	8994323	8994324	chr17:8994324:C:T	rs114890377	C	T	c	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr17	9188103	9188104	chr17:9188104:A:G	rs4791343	A	G	g	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr17	9410158	9410159	chr17:9410159:A:C	rs62067153	A	C	A	Sox3.mouse_HMG_2	4	1	+	5.469089850205826	-1.4389853775872306	CATGAATGGCATGGATT
chr17	9431988	9431989	chr17:9431989:A:T	rs6503201	A	T	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr17	9646796	9646797	chr17:9646797:G:A	rs74332578	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr17	9770957	9770958	chr17:9770958:A:T	rs11654598	A	T	T	Sox3.mouse_HMG_2	15	1	-	3.7335918550305047	1.4302021615718201	TTTTAATGCTATTTATT
chr17	9814316	9814317	chr17:9814317:T:C	rs16958824	T	C	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr17	9878710	9878711	chr17:9878711:G:A	rs62066054	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr17	10003974	10003975	chr17:10003975:T:C	rs16959225	T	C	T	Sox3.mouse_HMG_2	15	1	+	1.9095336530805878	-1.870265764425208	TAACAATCTCATCGATG
chr17	10095466	10095467	chr17:10095467:C:T	rs147406590	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr17	10095468	10095469	chr17:10095469:G:A	chr17:10095469:G:A	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr17	10429918	10429919	chr17:10429919:C:T	rs7215212	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr17	10632866	10632867	chr17:10632867:A:G	rs2285478	A	G	A	Sox3.mouse_HMG_2	11	1	-	1.780924774605642	-4.903449424854693	GGACTATTCCATTGAAG
chr17	10649304	10649305	chr17:10649305:C:T	rs1989811	C	T	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr17	10809064	10809065	chr17:10809065:T:G	rs7214355	T	G	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr17	10915286	10915287	chr17:10915287:T:C	rs9907876	T	C	T	Sox3.mouse_HMG_2	6	1	+	1.3978037320548902	-4.9914777023229995	CATCCATGGTATGGAAC
chr17	11004458	11004459	chr17:11004459:A:C	rs62060872	A	C	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr17	11024280	11024281	chr17:11024281:A:G	rs8078061	A	G	A	Sox3.mouse_HMG_2	10	1	+	3.5353960933685435	-3.373358685946675	GGGCAGTTGCATTGATT
chr17	11031561	11031562	chr17:11031562:T:C	rs79703440	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr17	11194154	11194155	chr17:11194155:G:A	rs1022460643	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr17	11218665	11218666	chr17:11218666:C:T	rs9904109	C	T	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr17	11275050	11275051	chr17:11275051:T:G	rs11655516	T	G	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr17	11493059	11493060	chr17:11493060:C:T	rs2908977	C	T	C	Sox3.mouse_HMG_2	0	1	-	7.052826196111877	5.356333902409214	GATAAATGTTAGTGTTG
chr17	11518944	11518945	chr17:11518945:C:T	rs2969205	C	T	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr17	13018404	13018405	chr17:13018405:G:A	rs76048435	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr17	13200868	13200869	chr17:13200869:T:C	rs73980310	T	C	C	Sox3.mouse_HMG_2	11	1	+	4.383146399302294	-2.3012278001580406	ATTCAATTTCATGGAGT
chr17	13200883	13200884	chr17:13200884:T:C	rs73980311	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr17	13418062	13418063	chr17:13418063:A:G	rs76850433	A	G	A	Sox3.mouse_HMG_2	4	1	+	1.4859916894715528	-4.903289744906336	TGTCATTGCTTTTGATG
chr17	13529540	13529541	chr17:13529541:T:C	rs55906252	T	C	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr17	13728450	13728451	chr17:13728451:T:C	rs9915975	T	C	t	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr17	14015363	14015364	chr17:14015364:C:A	rs10521249	C	A	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr17	14062361	14062362	chr17:14062362:C:T	rs117814917	C	T	c	Sox3.mouse_HMG_2	8	1	-	0.8511917532852002	-0.36759863145929567	CCTCATTGGCAGAGATT
chr17	14062370	14062371	chr17:14062371:C:G	rs555167559	C	G	c	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr17	14144159	14144160	chr17:14144160:G:A	rs11652402	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr17	14311556	14311557	chr17:14311557:T:C	rs67497521	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr17	14311588	14311589	chr17:14311589:T:G	rs9904614	T	G	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr17	14387222	14387223	chr17:14387223:A:G	rs16949426	A	G	A	Sox3.mouse_HMG_2	15	1	-	1.926724844642502	-1.8530745728632938	CCTCATTGCTATTGCTA
chr17	14435385	14435386	chr17:14435386:A:G	rs4239128	A	G	G	Sox3.mouse_HMG_2	10	1	+	6.744190463532737	-0.1645643157824836	TTACAATGCCAGTGAAA
chr17	14451404	14451405	chr17:14451405:T:G	rs7214552	T	G	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr17	14591367	14591368	chr17:14591368:G:C	rs73271013	G	C	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr17	14644896	14644897	chr17:14644897:G:A	rs12946501	G	A	G	Sox3.mouse_HMG_2	4	1	-	3.240888842125324	3.240888842125324	TATTCATGCTATTGAAG
chr17	14661705	14661706	chr17:14661706:T:C	rs11657986	T	C	T	Sox3.mouse_HMG_2	6	1	+	6.902158891216017	0.5128774568381276	CCTCATTGGCAGTGATT
chr17	14752167	14752168	chr17:14752168:T:G	rs16950357	T	G	G	Sox3.mouse_HMG_2	14	1	-	4.161081656575781	-1.8714469610128646	GAATAATTATAGTGAAA
chr17	14872095	14872096	chr17:14872096:T:A	rs72823749	T	A	T	Sox3.mouse_HMG_2	14	1	-	1.9396786271486373	-2.0797028966000077	CTTCTATTTCATAGATT
chr17	14872096	14872097	chr17:14872097:C:T	rs4792552	C	T	C	Sox3.mouse_HMG_2	13	1	-	1.9396786271486373	-4.111959877037675	CTTCTATTTCATAGATT
chr17	14882219	14882220	chr17:14882220:A:G	rs72823764	A	G	A	Sox3.mouse_HMG_2	10	1	+	1.8748932962019205	-5.033861483113301	TTTCCATGTCATTGTGT
chr17	14883990	14883991	chr17:14883991:C:T	rs55637624	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr17	15120710	15120711	chr17:15120711:T:C	rs11654880	T	C	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr17	15263667	15263668	chr17:15263668:T:C	rs231016	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr17	15271207	15271208	chr17:15271208:T:C	rs59753475	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.7390033484170453	-4.650278085960844	CATAAATGTCAGTGCAG
chr17	15282205	15282206	chr17:15282206:A:G	rs9944503	A	G	G	Sox3.mouse_HMG_2	15	1	+	1.9931981962961751	1.559460745034834	CATCCGTTTCATTGAAT
chr17	15308457	15308458	chr17:15308458:C:A	rs3760305	C	A	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr17	15448436	15448437	chr17:15448437:G:A	rs78109166	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr17	15618757	15618758	chr17:15618758:C:T	rs138065260	C	T	c	Sox3.mouse_HMG_2	8	1	+	0.5356255193035522	1.7900474854592212	GATAAATGCTTGTGAGT
chr17	15682835	15682836	chr17:15682836:C:T	rs163384	C	T	c	Sox3.mouse_HMG_2	7	1	-	1.2820308507611085	-5.346790644326948	GAAGAATGGTGGTGATT
chr17	15914936	15914937	chr17:15914937:C:T	rs113466152	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr17	15914976	15914977	chr17:15914977:T:C	rs859255	T	C	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr17	15963950	15963951	chr17:15963951:C:G	rs146686306	C	G	c	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr17	16052825	16052826	chr17:16052826:G:T	rs11657912	G	T	G	Sox3.mouse_HMG_2	0	1	-	1.771126026163397	0.3792672499849217	CATCAAGGATATTGGCC
chr17	16052986	16052987	chr17:16052987:T:G	rs77583787	T	G	T	Sox3.mouse_HMG_2	4	1	-	5.250091662808174	-1.6579835649848835	ACTGAATTTTATTGAAA
chr17	16107605	16107606	chr17:16107606:A:G	rs4566208	A	G	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr17	16398446	16398447	chr17:16398447:A:C	rs6502503	A	C	N	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr17	16445785	16445786	chr17:16445786:A:G	rs35076500	A	G	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr17	16584309	16584310	chr17:16584310:G:A	rs62072769	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr17	16653158	16653159	chr17:16653159:A:G	rs7221518	A	G	.	Sox3.mouse_HMG_2	14	1	-	2.3909289260127937	0.3777818321727941	TGACAATGGTATTATTG
chr17	16869791	16869792	chr17:16869792:T:G	rs35829898	T	G	N	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr17	16889543	16889544	chr17:16889544:A:G	rs4280293	A	G	G	Sox3.mouse_HMG_2	4	1	+	3.0793142768915445	-3.309967157486346	AAGCAATGTTCTTGAAA
chr17	16996807	16996808	chr17:16996808:C:T	rs11868128	C	T	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr17	17003431	17003432	chr17:17003432:G:T	rs12941341	G	T	g	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr17	17005676	17005677	chr17:17005677:G:A	rs6502552	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr17	17009365	17009366	chr17:17009366:C:G	rs7225537	C	G	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr17	17028216	17028217	chr17:17028217:C:T	rs73979049	C	T	C	Sox3.mouse_HMG_2	13	1	-	1.6057415141796556	-4.4458969900066565	GCTCATTGTCAGCGATG
chr17	17048194	17048195	chr17:17048195:C:G	rs7225990	C	G	.	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr17	17150346	17150347	chr17:17150347:T:C	rs3744133	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr17	17186470	17186471	chr17:17186471:A:C	rs59061797	A	C	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr17	17226609	17226610	chr17:17226610:C:T	rs1708620	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr17	17242757	17242758	chr17:17242758:G:A	rs544685892	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr17	17270591	17270592	chr17:17270592:C:T	rs76157921	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr17	17419945	17419946	chr17:17419946:C:T	rs4539660	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr17	17422636	17422637	chr17:17422637:T:G	rs16961675	T	G	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr17	17511902	17511903	chr17:17511903:T:C	rs3785499	T	C	T	Sox3.mouse_HMG_2	11	1	+	1.740691144194559	-4.943683055265777	CATCAGGGTCATTGGTG
chr17	17750095	17750096	chr17:17750096:A:G	chr17:17750096:A:G	A	G	A	Sox3.mouse_HMG_2	15	1	-	1.6762245229071395	-2.103574894598656	TGTGAATGCAAGTGATA
chr17	17750096	17750097	chr17:17750097:T:C	rs12945601	T	C	T	Sox3.mouse_HMG_2	14	1	-	1.6762245229071395	-1.641841746864462	TGTGAATGCAAGTGATA
chr17	18313764	18313765	chr17:18313765:T:C	rs3794770	T	C	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr17	18476820	18476821	chr17:18476821:C:G	rs4924879	C	G	G	Sox3.mouse_HMG_2	3	1	+	3.444289511880845	-2.6062297980084517	TGTCAAAGGCAGTGGTG
chr17	18695254	18695255	chr17:18695255:C:T	rs8070109	C	T	.	Sox3.mouse_HMG_2	8	1	-	1.897496748065492	0.6787063633209949	CAACAATGGGAGTGGGT
chr17	18772732	18772733	chr17:18772733:C:T	rs75892641	C	T	c	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr17	18900885	18900886	chr17:18900886:T:A	rs4924941	T	A	t	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr17	18924477	18924478	chr17:18924478:C:G	rs11655553	C	G	-	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr17	18924479	18924480	chr17:18924480:C:A	rs8080032	C	A	-	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr17	18991577	18991578	chr17:18991578:C:T	rs534423334	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr17	19063868	19063869	chr17:19063869:G:A	rs1476759554	G	A	.	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr17	19063869	19063870	chr17:19063870:C:G	rs577577062	C	G	.	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr17	19063895	19063896	chr17:19063896:T:C	rs200684642	T	C	.	Sox3.mouse_HMG_2	8	1	-	3.065310696352153	4.284101081096651	GCTCAATGACAGAGACT
chr17	19063902	19063903	chr17:19063903:G:A	rs367870364	G	A	.	Sox3.mouse_HMG_2	1	1	-	3.065310696352153	3.0855286736427985	GCTCAATGACAGAGACT
chr17	19350667	19350668	chr17:19350668:A:G	rs4924783	A	G	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr17	19367133	19367134	chr17:19367134:G:A	rs3886478	G	A	G	Sox3.mouse_HMG_2	16	1	+	-0.12057937941113235	-0.33215380589638305	CAGCATTGCCAGTGACG
chr17	19551411	19551412	chr17:19551412:G:C	rs2247437	G	C	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr17	19551419	19551420	chr17:19551420:G:A	rs2247436	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr17	19710287	19710288	chr17:19710288:A:C	rs16960360	A	C	A	Sox3.mouse_HMG_2	2	1	-	3.038028118517005	-2.115846548162885	TATCTAGGTCAGTGATT
chr17	19897235	19897236	chr17:19897236:T:C	rs9899357	T	C	T	Sox3.mouse_HMG_2	5	1	+	1.1270131253884583	1.1270131253884583	CATCATGGACAGTGATG
chr17	20011813	20011814	chr17:20011814:C:T	rs79406817	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr17	20053634	20053635	chr17:20053635:A:G	rs55853482	A	G	A	Sox3.mouse_HMG_2	10	1	+	3.6408012770374123	-3.267953502277808	CAGCAATGCTATAGAGA
chr17	20128235	20128236	chr17:20128236:A:G	rs116218439	A	G	A	Sox3.mouse_HMG_2	15	1	-	1.5833060755763098	-2.1964933419294863	TTTCAAAGTCACTGATG
chr17	20173396	20173397	chr17:20173397:A:G	rs78172557	A	G	A	Sox3.mouse_HMG_2	14	1	+	1.6865143539217753	-1.631551915849826	GGTCACTTTTATTTATC
chr17	20203881	20203882	chr17:20203882:T:C	rs2703804	T	C	C	Sox3.mouse_HMG_2	0	1	+	11.078851291610475	11.563986305864583	TAACAATGCTATTGAGA
chr17	20593409	20593410	chr17:20593410:T:C	rs9904149	T	C	.	Sox3.mouse_HMG_2	5	1	+	4.956131446802834	4.956131446802834	GGGCATTGTCATTGATT
chr17	20651041	20651042	chr17:20651042:T:C	rs643991	T	C	.	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr17	20902183	20902184	chr17:20902184:T:G	rs16962515	T	G	.	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr17	20977995	20977996	chr17:20977996:A:G	rs11654347	A	G	.	Sox3.mouse_HMG_2	6	1	-	4.6350146693558925	-1.7542667650219994	GCTCAATGTCATTATTC
chr17	21011321	21011322	chr17:21011322:G:A	rs2291035	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr17	21291272	21291273	chr17:21291273:G:C	rs199535233	G	C	C	Sox3.mouse_HMG_2	3	1	-	6.4778015987687265	0.42728228887943026	ATTCTATTGTATTGATT
chr17	21317190	21317191	chr17:21317191:A:G	rs141540832	A	G	a	Sox3.mouse_HMG_2	8	1	-	3.256980468530469	2.0025585023747987	TGTAAATGTTAGTGACC
chr17	21539449	21539450	chr17:21539450:A:G	rs1007272160	A	G	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr17	21980452	21980453	chr17:21980453:G:T	rs1281953092	G	T	.	Sox3.mouse_HMG_2	8	1	-	3.7336278721585843	2.9556215205655447	ATTCCATTCTATTGAAT
chr17	21982257	21982258	chr17:21982258:C:G	rs1370414508	C	G	.	Sox3.mouse_HMG_2	13	1	-	2.006080775683063	-4.3811792632441495	ACTCCATTCCATTGGTT
chr17	22132118	22132119	chr17:22132119:A:C	rs80109279	A	C	.	Sox3.mouse_HMG_2	4	1	+	2.093112576022851	-4.814962651770207	AATCAAGTGCATTTATT
chr17	22489700	22489701	chr17:22489701:A:G	chr17:22489701:A:G	A	G	.	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr17	22524095	22524096	chr17:22524096:C:T	rs76639367	C	T	.	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr17	22714580	22714581	chr17:22714581:C:T	rs12325748	C	T	t	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr17	22716750	22716751	chr17:22716751:T:G	rs113817313	T	G	.	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr17	26720210	26720211	chr17:26720211:A:C	rs71208295	A	C	a	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr17	26800067	26800068	chr17:26800068:G:T	chr17:26800068:G:T	G	T	N	Sox3.mouse_HMG_2	11	1	+	7.5390984687034965	8.91962064611732	AATCAATGGAAGTGAAT
chr17	26861440	26861441	chr17:26861441:T:G	rs1377947766	T	G	N	Sox3.mouse_HMG_2	14	1	-	4.468514280076836	-1.5640143375118085	TTTCAATTCCATTCAAT
chr17	27091061	27091062	chr17:27091062:C:T	rs34055577	C	T	c	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr17	27239602	27239603	chr17:27239603:T:G	rs62057211	T	G	T	Sox3.mouse_HMG_2	12	1	+	2.4245402218280194	-3.9620484508436955	TATCCATTGCATTTATA
chr17	27242859	27242860	chr17:27242860:A:T	rs75923434	A	T	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr17	27244372	27244373	chr17:27244373:C:T	rs56295812	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr17	27354766	27354767	chr17:27354767:T:C	rs62058596	T	C	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr17	27376777	27376778	chr17:27376778:T:A	rs322195	T	A	A	Sox3.mouse_HMG_2	12	1	+	3.2088453527853993	-2.8421217851454164	GATCAGTGCTTGTGATA
chr17	27669185	27669186	chr17:27669186:T:C	rs116123712	T	C	T	Sox3.mouse_HMG_2	11	1	+	3.134474573328837	-3.5498996261314977	GTTCAAGTCCATTGAAC
chr17	27771754	27771755	chr17:27771755:G:A	rs7217335	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr17	27811025	27811026	chr17:27811026:A:G	rs2531864	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr17	27845349	27845350	chr17:27845350:G:A	rs72841278	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr17	27993269	27993270	chr17:27993270:T:C	rs59828704	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.081050302068411	-1.6033238973919253	GTTCAAGGTCATTGAGC
chr17	28216848	28216849	chr17:28216849:C:A	chr17:28216849:C:A	C	A	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr17	28968371	28968372	chr17:28968372:C:T	rs868572508	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr17	28968410	28968411	chr17:28968411:G:A	rs773848903	G	A	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr17	28968412	28968413	chr17:28968413:C:T	rs116294447	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr17	28971690	28971691	chr17:28971691:A:G	rs12453166	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr17	29079047	29079048	chr17:29079048:G:A	rs1873476	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr17	29144135	29144136	chr17:29144136:G:C	chr17:29144136:G:C	G	C	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr17	29216328	29216329	chr17:29216329:C:G	rs72819418	C	G	C	Sox3.mouse_HMG_2	16	1	+	2.16739735930269	3.406668719329195	TCTCAATGACAGTGCAC
chr17	29518613	29518614	chr17:29518614:A:G	rs12936194	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.388289363179404	-3.0009920711984854	CTTCCATTGTAGTGAGG
chr17	29854519	29854520	chr17:29854520:T:C	rs75486571	T	C	T	Sox3.mouse_HMG_2	9	1	+	5.269688721070375	4.577036178198416	GAACAATTATAGTAATA
chr17	30322998	30322999	chr17:30322999:C:A	rs3110453	C	A	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr17	30341841	30341842	chr17:30341842:C:T	rs6505179	C	T	T	Sox3.mouse_HMG_2	11	1	-	3.6732141523071244	-0.8982699760261607	TGCCAATTTCAGTGGTG
chr17	30831428	30831429	chr17:30831429:A:G	chr17:30831429:A:G	A	G	.	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr17	30840634	30840635	chr17:30840635:A:C	rs3764421	A	C	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr17	31071350	31071351	chr17:31071351:G:A	rs4795571	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr17	31089480	31089481	chr17:31089481:T:C	rs2940183	T	C	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr17	31269362	31269363	chr17:31269363:C:T	rs73988045	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.206652993464966	-3.844985510721346	CAACAATGTCCTTGTAT
chr17	31274398	31274399	chr17:31274399:A:C	rs113359320	A	C	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr17	31322998	31322999	chr17:31322999:C:A	rs764766236	C	A	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr17	31557397	31557398	chr17:31557398:C:T	rs4794895	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr17	31630143	31630144	chr17:31630144:T:C	rs62062193	T	C	t	Sox3.mouse_HMG_2	6	1	+	9.397931511308048	3.008650076930156	CTTCAATGATAGTGAAC
chr17	31646493	31646494	chr17:31646494:A:G	rs770498	A	G	G	Sox3.mouse_HMG_2	12	1	-	1.6490940693935958	-4.401873068537219	TATCTTTGGCAGTGATA
chr17	32016448	32016449	chr17:32016449:T:C	rs16972820	T	C	.	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr17	32504672	32504673	chr17:32504673:G:A	rs117164166	G	A	g	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr17	32519833	32519834	chr17:32519834:A:T	rs73981821	A	T	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr17	32943700	32943701	chr17:32943701:G:A	rs9896361	G	A	A	Sox3.mouse_HMG_2	1	1	+	1.1737596328253777	3.180147574844836	GGTCAAGGCTATTGTCA
chr17	33073596	33073597	chr17:33073597:G:C	rs9893346	G	C	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr17	33162731	33162732	chr17:33162732:C:G	rs9303661	C	G	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr17	33165078	33165079	chr17:33165079:G:T	rs17184147	G	T	G	Sox3.mouse_HMG_2	8	1	-	1.0922902230796363	0.3142838714865969	GTTCTATGCTAGGGATT
chr17	33272628	33272629	chr17:33272629:G:C	rs12601597	G	C	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr17	33299283	33299284	chr17:33299284:G:A	rs16968234	G	A	G	Sox3.mouse_HMG_2	1	1	+	4.393657465423526	6.400045407442984	AGTCAATGCTACTGGTG
chr17	33501966	33501967	chr17:33501967:T:C	rs529302835	T	C	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr17	33657482	33657483	chr17:33657483:T:C	rs280051	T	C	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr17	33757509	33757510	chr17:33757510:T:G	rs902568	T	G	G	Sox3.mouse_HMG_2	16	1	+	2.033286865706982	1.6695651760730363	ACTTAATGGCCTTGATT
chr17	33781401	33781402	chr17:33781402:A:G	rs16968891	A	G	A	Sox3.mouse_HMG_2	6	1	-	1.5636396706718216	-4.825641763706068	GACCAATGTTAGAGACA
chr17	33921949	33921950	chr17:33921950:T:A	rs17783755	T	A	A	Sox3.mouse_HMG_2	0	1	+	5.166289366311287	4.25956560438692	TAACAATGGAATTGGTG
chr17	33975580	33975581	chr17:33975581:G:A	rs3924278	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr17	34160314	34160315	chr17:34160315:A:G	rs2097761	A	G	A	Sox3.mouse_HMG_2	11	1	-	0.05810642146715332	-6.626267777993181	GGTCTGTGCTATTGAGG
chr17	34173333	34173334	chr17:34173334:C:T	rs4795883	C	T	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr17	34361784	34361785	chr17:34361785:A:C	rs61758325	A	C	A	Sox3.mouse_HMG_2	6	1	-	3.177327927642442	-3.730747300150614	GCTTAATGTAAGTGATC
chr17	34378974	34378975	chr17:34378975:T:G	rs2157960	T	G	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr17	34393262	34393263	chr17:34393263:C:A	rs159262	C	A	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr17	34486782	34486783	chr17:34486783:T:C	rs10853163	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr17	34501284	34501285	chr17:34501285:G:A	rs1437214	G	A	G	Sox3.mouse_HMG_2	3	1	-	5.9780344120050035	1.121178536782781	TGTCAATTTCATTCAGT
chr17	34577566	34577567	chr17:34577567:C:T	rs887230	C	T	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr17	34645709	34645710	chr17:34645710:T:C	rs4990638	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.2419495881025386	-4.1473318462753515	CGTCAATGTTGATGAAT
chr17	35079695	35079696	chr17:35079696:G:C	rs11870662	G	C	G	Sox3.mouse_HMG_2	0	1	+	7.857192496459295	7.5525589789351075	GATCAATGGGAGTGGTG
chr17	35080620	35080621	chr17:35080621:T:C	rs118074685	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.413586994701116	-1.2707872047592195	AAACAATGGTGTTGATC
chr17	35121798	35121799	chr17:35121799:T:C	rs1871892	T	C	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr17	35244289	35244290	chr17:35244290:G:T	rs57708672	G	T	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr17	35548668	35548669	chr17:35548669:T:A	rs78364481	T	A	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr17	35832561	35832562	chr17:35832562:C:T	rs4796113	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr17	35895607	35895608	chr17:35895608:G:A	rs61590868	G	A	G	Sox3.mouse_HMG_2	13	1	+	8.160512861771789	2.1088743575854765	ACACAATTTTATTGAGT
chr17	35973710	35973711	chr17:35973711:C:A	rs61054586	C	A	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr17	36009726	36009727	chr17:36009727:A:T	rs1608205	A	T	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr17	36098179	36098180	chr17:36098180:G:T	rs1634507	G	T	g	Sox3.mouse_HMG_2	11	1	+	0.7174212415150275	2.0979434189288524	CATGAATGCTGGTGAGG
chr17	36880723	36880724	chr17:36880724:G:A	rs10512480	G	A	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr17	37109760	37109761	chr17:37109761:T:C	rs2053670	T	C	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr17	37251962	37251963	chr17:37251963:A:G	rs1519091	A	G	A	Sox3.mouse_HMG_2	9	1	-	0.8767354759647419	0.18408293309278395	AATCAATGGTCCTGAGT
chr17	37374912	37374913	chr17:37374913:C:G	rs11650168	C	G	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr17	37742137	37742138	chr17:37742138:C:T	rs140202989	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr17	37771360	37771361	chr17:37771361:C:T	rs34623926	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr17	37852040	37852041	chr17:37852041:C:A	rs8069122	C	A	c	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr17	38409162	38409163	chr17:38409163:A:T	rs6503574	A	T	T	Sox3.mouse_HMG_2	12	1	-	1.0663426314206956	-4.984624506510121	ACTCCATTGCAGTGGTT
chr17	38524805	38524806	chr17:38524806:T:C	rs4795288	T	C	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr17	38597578	38597579	chr17:38597579:G:A	rs3892952	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr17	38609604	38609605	chr17:38609605:G:C	rs7214959	G	C	g	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr17	38609649	38609650	chr17:38609650:C:T	rs7210925	C	T	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr17	38794419	38794420	chr17:38794420:T:G	rs4794790	T	G	T	Sox3.mouse_HMG_2	14	1	-	1.9957907981907919	-4.036737819397854	CGATTATGTTATTGATG
chr17	38942752	38942753	chr17:38942753:T:C	rs199649284	T	C	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr17	39041243	39041244	chr17:39041244:T:G	rs8071973	T	G	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr17	39383565	39383566	chr17:39383566:T:G	rs7210488	T	G	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr17	39526403	39526404	chr17:39526404:A:G	rs4404103	A	G	A	Sox3.mouse_HMG_2	4	1	+	7.679376783680016	1.2900953493021279	CATCAATGGCCTTGGTT
chr17	39788470	39788471	chr17:39788471:T:G	rs1474879591	T	G	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr17	40168534	40168535	chr17:40168535:A:G	rs41275668	A	G	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr17	40220328	40220329	chr17:40220329:T:G	rs55835834	T	G	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr17	40439600	40439601	chr17:40439601:C:T	rs1868758	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr17	40488499	40488500	chr17:40488500:G:A	rs34377860	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr17	40516141	40516142	chr17:40516142:T:C	rs532825451	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr17	40552331	40552332	chr17:40552332:G:A	rs533343604	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr17	40567962	40567963	chr17:40567963:A:G	rs62066595	A	G	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr17	40818433	40818434	chr17:40818434:G:A	rs71371449	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr17	40818452	40818453	chr17:40818453:T:C	rs768920029	T	C	T	Sox3.mouse_HMG_2	6	1	+	2.4256917314725737	-3.963589702905313	CAATAATTGTCTTGATT
chr17	40845057	40845058	chr17:40845058:T:C	rs17474883	T	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr17	40883799	40883800	chr17:40883800:G:A	rs2524302	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr17	40883853	40883854	chr17:40883854:C:T	rs2189387	C	T	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr17	40939035	40939036	chr17:40939036:A:G	rs7224867	A	G	G	Sox3.mouse_HMG_2	8	1	-	6.050595769862308	4.796173803706638	CATTAATTTCATTGTAG
chr17	40964426	40964427	chr17:40964427:C:T	rs775073596	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr17	40987545	40987546	chr17:40987546:A:G	rs2872966	A	G	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr17	41304686	41304687	chr17:41304687:G:C	rs8072475	G	C	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr17	41381931	41381932	chr17:41381932:G:C	rs3744390	G	C	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr17	41392909	41392910	chr17:41392910:A:G	rs9907506	A	G	G	Sox3.mouse_HMG_2	4	1	+	5.043323078598009	-1.34595835577988	CACCAATGCCATTGGGT
chr17	41404754	41404755	chr17:41404755:T:A	rs16966784	T	A	T	Sox3.mouse_HMG_2	2	1	+	3.1628470140614398	-0.11880976172209629	CTTCAATGCCTGTGGTT
chr17	41444117	41444118	chr17:41444118:C:T	rs4796639	C	T	C	Sox3.mouse_HMG_2	4	1	-	4.6416371995419805	11.030918633919871	GGTCGATTGCAGTGAAG
chr17	41462940	41462941	chr17:41462941:C:T	rs11078993	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr17	41483988	41483989	chr17:41483989:T:C	rs4796730	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.0481657672260734	-3.341115667151818	CGGAAATGTTATTGAAT
chr17	41506882	41506883	chr17:41506883:G:A	rs8079823	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr17	41506883	41506884	chr17:41506884:A:T	rs8081495	A	T	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr17	41630162	41630163	chr17:41630163:C:T	rs12937570	C	T	T	Sox3.mouse_HMG_2	11	1	-	2.426030921721157	-2.1454532066121277	ACACAATGCTAGTTATA
chr17	41693831	41693832	chr17:41693832:A:G	rs77748677	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr17	42003448	42003449	chr17:42003449:G:A	rs8079958	G	A	G	Sox3.mouse_HMG_2	11	1	+	3.607500092723327	-0.9639840356099592	GAACAATTCCAGTGTCA
chr17	42055762	42055763	chr17:42055763:G:A	rs183142355	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr17	42171537	42171538	chr17:42171538:C:T	chr17:42171538:C:T	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr17	42238755	42238756	chr17:42238756:C:T	rs60380615	C	T	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr17	42248913	42248914	chr17:42248914:T:C	rs114408613	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr17	42248960	42248961	chr17:42248961:G:A	rs763777481	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr17	42560398	42560399	chr17:42560399:G:C	rs621141	G	C	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr17	43125663	43125664	chr17:43125664:A:G	rs1201118203	A	G	A	Sox3.mouse_HMG_2	10	1	-	1.7546429211342158	1.7546429211342158	CAGCAATTACTGTGATG
chr17	43171067	43171068	chr17:43171068:G:A	rs193017954	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr17	43732478	43732479	chr17:43732479:C:T	rs1534402	C	T	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr17	43815752	43815753	chr17:43815753:T:C	rs1368424620	T	C	T	Sox3.mouse_HMG_2	7	1	+	1.4024577579614979	-4.100472523281312	CTCCAATTGCAATGATG
chr17	44620115	44620116	chr17:44620116:G:A	rs11655754	G	A	g	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr17	44848667	44848668	chr17:44848668:C:A	rs7225919	C	A	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr17	44872073	44872074	chr17:44872074:C:T	rs71373521	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr17	44872082	44872083	chr17:44872083:G:A	rs17628255	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr17	44876040	44876041	chr17:44876041:A:G	rs2289674	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr17	45287963	45287964	chr17:45287964:C:T	rs11574816	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr17	45408424	45408425	chr17:45408425:G:A	rs1230103	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr17	45576741	45576742	chr17:45576742:T:C	rs2693366	T	C	.	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr17	45580254	45580255	chr17:45580255:G:T	rs55887853	G	T	.	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr17	45745959	45745960	chr17:45745960:A:G	rs75643244	A	G	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr17	45773278	45773279	chr17:45773279:C:T	rs60814418	C	T	T	Sox3.mouse_HMG_2	3	1	+	2.983330259750506	-1.8735256154717141	TCCCAATTCTAGTGAGG
chr17	45837361	45837362	chr17:45837362:G:T	rs62054803	G	T	G	Sox3.mouse_HMG_2	7	1	+	2.986073024094517	1.8601818102492713	AGACAATGCCAGTGGGG
chr17	45938079	45938080	chr17:45938080:A:G	rs12150229	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr17	45957492	45957493	chr17:45957493:A:G	rs17571809	A	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr17	46031869	46031870	chr17:46031870:G:A	rs117568760	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.800781183773744	-3.250857320412568	AGACAACTGTATTGATC
chr17	46031881	46031882	chr17:46031882:G:A	rs55881134	G	A	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr17	46171447	46171448	chr17:46171448:G:A	rs1881194	G	A	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr17	46214759	46214760	chr17:46214760:T:C	rs2668695	T	C	c	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr17	46277613	46277614	chr17:46277614:C:A	rs2942178	C	A	.	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr17	46894285	46894286	chr17:46894286:C:A	rs16941192	C	A	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr17	46940492	46940493	chr17:46940493:A:G	rs758392	A	G	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr17	46998816	46998817	chr17:46998817:C:G	rs77212031	C	G	.	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr17	47276602	47276603	chr17:47276603:C:T	rs115492947	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr17	47909129	47909130	chr17:47909130:A:G	rs78317601	A	G	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr17	47935135	47935136	chr17:47935136:A:G	rs80347400	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr17	47935138	47935139	chr17:47935139:C:T	rs11652827	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr17	48128652	48128653	chr17:48128653:C:T	rs758999	C	T	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr17	48173887	48173888	chr17:48173888:C:T	rs17681361	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr17	48207164	48207165	chr17:48207165:G:T	rs190591861	G	T	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr17	48260562	48260563	chr17:48260563:T:C	rs8073979	T	C	T	Sox3.mouse_HMG_2	6	1	+	9.91202579338434	3.522744359006449	GTTCAATTTAATTGATT
chr17	48333439	48333440	chr17:48333440:C:T	rs183071364	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr17	48609409	48609410	chr17:48609410:A:T	rs9912706	A	T	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr17	48735078	48735079	chr17:48735079:C:G	rs112743916	C	G	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr17	48994120	48994121	chr17:48994121:A:G	rs1390154	A	G	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr17	49112452	49112453	chr17:49112453:G:A	rs1004274	G	A	-	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr17	49145919	49145920	chr17:49145920:T:C	rs4794023	T	C	C	Sox3.mouse_HMG_2	4	1	-	4.3391159227076574	-2.0501655116702313	CAACAATTCCATTAAAG
chr17	49184292	49184293	chr17:49184293:G:C	rs2898833	G	C	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr17	49209385	49209386	chr17:49209386:C:A	rs3744320	C	A	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr17	49602992	49602993	chr17:49602993:C:A	rs74749701	C	A	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr17	49965083	49965084	chr17:49965084:G:A	rs148972131	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr17	50171544	50171545	chr17:50171545:C:G	rs1046329	C	G	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr17	50208789	50208790	chr17:50208790:T:G	rs2696274	T	G	G	Sox3.mouse_HMG_2	12	1	+	2.0817376484369596	-4.304851024234756	GTTCAAATGCAGTGTTT
chr17	50350620	50350621	chr17:50350621:C:G	rs72832442	C	G	G	Sox3.mouse_HMG_2	0	1	+	1.2368108996420393	1.5414444171662272	CGACTATGTCAGTGAAC
chr17	50421711	50421712	chr17:50421712:A:C	rs77582421	A	C	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr17	50517618	50517619	chr17:50517619:G:A	rs113141749	G	A	G	Sox3.mouse_HMG_2	11	1	+	2.058378194755583	-2.513105933577702	CTTCGATGGCAGTGACC
chr17	50862165	50862166	chr17:50862166:C:T	rs9303568	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr17	50893876	50893877	chr17:50893877:C:T	rs180803222	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr17	50940779	50940780	chr17:50940780:T:C	rs9893647	T	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr17	51167675	51167676	chr17:51167676:T:G	rs73351708	T	G	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr17	51805599	51805600	chr17:51805600:A:G	rs73336608	A	G	a	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr17	51861033	51861034	chr17:51861034:C:T	rs9908914	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr17	52648947	52648948	chr17:52648948:C:T	rs7218555	C	T	C	Sox3.mouse_HMG_2	0	1	-	1.854228019194011	0.1577357254913479	GAACATTGTTATTGGCA
chr17	52789220	52789221	chr17:52789221:T:C	rs16952211	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr17	53236992	53236993	chr17:53236993:C:T	rs2222372	C	T	C	Sox3.mouse_HMG_2	8	1	+	4.328428217492358	5.582850183648025	AATGAATGCTATTTATT
chr17	53456216	53456217	chr17:53456217:G:C	rs550933477	G	C	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr17	53561186	53561187	chr17:53561187:G:A	rs4309447	G	A	A	Sox3.mouse_HMG_2	0	1	-	3.0417371867353937	2.556602172481286	CGTTAATCTTATTGAAA
chr17	53825805	53825806	chr17:53825806:A:G	rs9900857	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr17	54218039	54218040	chr17:54218040:G:A	rs117822504	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr17	54352474	54352475	chr17:54352475:T:A	rs8079552	T	A	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr17	54609001	54609002	chr17:54609002:A:G	rs9912242	A	G	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr17	55133815	55133816	chr17:55133816:C:T	rs2529506	C	T	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr17	55175708	55175709	chr17:55175709:G:A	rs7212103	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr17	55286664	55286665	chr17:55286665:T:C	rs16955840	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr17	55641801	55641802	chr17:55641802:A:G	rs149625089	A	G	A	Sox3.mouse_HMG_2	6	1	-	1.646012776325768	-4.743268658052122	CTTCATTGCTGTTGATT
chr17	55654217	55654218	chr17:55654218:G:A	rs8074638	G	A	G	Sox3.mouse_HMG_2	1	1	+	2.3348483933596063	4.341236335379064	CGTCACTGCTGTTGATT
chr17	55795177	55795178	chr17:55795178:G:T	rs62078573	G	T	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr17	55910090	55910091	chr17:55910091:G:A	rs12950088	G	A	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr17	55921410	55921411	chr17:55921411:T:G	rs73320219	T	G	T	Sox3.mouse_HMG_2	9	1	+	6.114439327428071	0.1304580675437525	GAACAAGGATAGTGATT
chr17	56072087	56072088	chr17:56072088:G:T	rs6505031	G	T	T	Sox3.mouse_HMG_2	11	1	+	1.0671765955386368	2.44769877295246	CATCCATGTCAGTAAGA
chr17	56257954	56257955	chr17:56257955:A:T	rs56138213	A	T	A	Sox3.mouse_HMG_2	12	1	-	2.499939411876621	-3.551027726054195	GAGTAATGACAGTGAGG
chr17	56595488	56595489	chr17:56595489:G:C	rs116716909	G	C	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr17	56599889	56599890	chr17:56599890:A:G	rs7213501	A	G	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr17	56624680	56624681	chr17:56624681:G:C	rs4794652	G	C	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr17	56624696	56624697	chr17:56624697:A:G	rs78078978	A	G	A	Sox3.mouse_HMG_2	5	1	+	1.701537313016133	-4.6877441213617566	CATCAATTGGTTTGAAA
chr17	57104955	57104956	chr17:57104956:C:T	rs3785484	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr17	57214753	57214754	chr17:57214754:T:G	rs12709393	T	G	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr17	57263867	57263868	chr17:57263868:G:A	rs62058026	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr17	57380188	57380189	chr17:57380189:T:C	rs2695349	T	C	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr17	57485954	57485955	chr17:57485955:C:T	rs277063	C	T	C	Sox3.mouse_HMG_2	8	1	-	4.488689007227721	3.2698986224832236	GGTCTATTGCATTGGTG
chr17	57570727	57570728	chr17:57570728:G:A	rs72833094	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr17	57575377	57575378	chr17:57575378:C:T	rs1362506	C	T	T	Sox3.mouse_HMG_2	1	1	+	2.838361266656671	2.8585792439473163	GCTCAATGGGAGTGGAG
chr17	57640383	57640384	chr17:57640384:T:C	rs6503825	T	C	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr17	57709853	57709854	chr17:57709854:G:A	rs77928621	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr17	57748463	57748464	chr17:57748464:A:G	rs9892194	A	G	G	Sox3.mouse_HMG_2	14	1	+	1.2366954156979117	-2.0813708540736897	GGCCTATTTCAGTGATT
chr17	57839209	57839210	chr17:57839210:C:G	rs3785489	C	G	C	Sox3.mouse_HMG_2	12	1	-	4.781167658823818	5.116789193564717	CTTTAATGTCATGGATT
chr17	57942074	57942075	chr17:57942075:C:T	rs77469926	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr17	58370590	58370591	chr17:58370591:G:C	rs62082093	G	C	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr17	58615770	58615771	chr17:58615771:C:T	rs302859	C	T	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr17	58667025	58667026	chr17:58667026:C:T	rs113473833	C	T	c	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr17	59336685	59336686	chr17:59336686:C:T	rs8065479	C	T	T	Sox3.mouse_HMG_2	7	1	-	6.293724934530267	-0.3350965605577912	TATTAATGTTAGTGCTG
chr17	59423821	59423822	chr17:59423822:A:T	rs117262092	A	T	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr17	59441433	59441434	chr17:59441434:G:A	rs116933436	G	A	G	Sox3.mouse_HMG_2	8	1	-	3.0208248454047055	4.2752468115603754	TGACAATGCTATTAAGA
chr17	59572816	59572817	chr17:59572817:A:G	rs143388809	A	G	a	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr17	59618630	59618631	chr17:59618631:A:G	rs12944716	A	G	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr17	59777058	59777059	chr17:59777059:G:A	rs6503941	G	A	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr17	59825678	59825679	chr17:59825679:T:C	chr17:59825679:T:C	T	C	T	Sox3.mouse_HMG_2	10	1	-	2.018421482041699	-4.89033329727352	CCTCAAGTTCAATGATT
chr17	59825679	59825680	chr17:59825680:G:C	rs7213697	G	C	G	Sox3.mouse_HMG_2	9	1	-	2.018421482041699	-3.27290723497066	CCTCAAGTTCAATGATT
chr17	60127471	60127472	chr17:60127472:A:G	rs11657467	A	G	-	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr17	60249686	60249687	chr17:60249687:A:G	rs78812326	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr17	60393041	60393042	chr17:60393042:T:G	rs112135325	T	G	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr17	60393051	60393052	chr17:60393052:G:A	rs192678203	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr17	61002667	61002668	chr17:61002668:G:A	rs78039895	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr17	61313112	61313113	chr17:61313113:C:T	rs7221895	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr17	61417212	61417213	chr17:61417213:C:G	chr17:61417213:C:G	C	G	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr17	61417212	61417213	chr17:61417213:C:T	rs882367	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr17	61962633	61962634	chr17:61962634:A:G	rs2278813	A	G	A	Sox3.mouse_HMG_2	11	1	-	6.955503507726892	0.27112930826655707	GTTCTATTATATTGATT
chr17	62058806	62058807	chr17:62058807:G:A	rs4422036	G	A	G	Sox3.mouse_HMG_2	7	1	+	6.01896150493536	-0.6098599901526978	GCTCAACGGTATTGACT
chr17	62193477	62193478	chr17:62193478:G:C	rs73327612	G	C	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr17	62316091	62316092	chr17:62316092:A:G	rs115432314	A	G	-	Sox3.mouse_HMG_2	9	1	-	2.847270420089324	2.1546178772173645	AATCAGTTTTATTGGGC
chr17	62787400	62787401	chr17:62787401:T:C	rs143504792	T	C	T	Sox3.mouse_HMG_2	11	1	+	10.286675973227318	3.602301773766981	GATCCATGCCATTGATA
chr17	62792248	62792249	chr17:62792249:G:T	rs145907152	G	T	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr17	63787426	63787427	chr17:63787427:T:C	rs9747164	T	C	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr17	64155272	64155273	chr17:64155273:G:A	rs79877121	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr17	64412035	64412036	chr17:64412036:G:C	rs35757499	G	C	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr17	64498890	64498891	chr17:64498891:C:T	rs10512502	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr17	64815245	64815246	chr17:64815246:A:C	rs2074181	A	C	C	Sox3.mouse_HMG_2	6	1	-	4.612448375409856	-2.295626852383204	CTTCTATGGTATTGTTG
chr17	64929768	64929769	chr17:64929769:A:G	rs62072098	A	G	.	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr17	65023285	65023286	chr17:65023286:C:T	rs117394331	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr17	65023312	65023313	chr17:65023313:C:T	rs79770194	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr17	65371635	65371636	chr17:65371636:C:T	chr17:65371636:C:T	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr17	65465056	65465057	chr17:65465057:T:C	rs4563070	T	C	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr17	65656797	65656798	chr17:65656798:T:C	rs4790928	T	C	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr17	65668762	65668763	chr17:65668763:G:T	rs11650252	G	T	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr17	65692132	65692133	chr17:65692133:C:T	rs232128	C	T	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr17	65775039	65775040	chr17:65775040:C:T	rs115123735	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr17	65821198	65821199	chr17:65821199:T:C	rs76997522	T	C	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr17	66021212	66021213	chr17:66021213:A:G	rs973861	A	G	a	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr17	66305536	66305537	chr17:66305537:T:C	rs4520871	T	C	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr17	66411819	66411820	chr17:66411820:C:G	rs1015240978	C	G	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr17	66411826	66411827	chr17:66411827:T:G	rs4486944	T	G	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr17	66431744	66431745	chr17:66431745:T:C	rs9913908	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr17	66509267	66509268	chr17:66509268:G:T	chr17:66509268:G:T	G	T	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr17	66661722	66661723	chr17:66661723:G:T	rs149144268	G	T	G	Sox3.mouse_HMG_2	8	1	+	2.4193157254112676	3.23295365841548	CGTAAATGGTGTTGATG
chr17	66661744	66661745	chr17:66661745:G:C	rs181232072	G	C	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr17	66791454	66791455	chr17:66791455:T:C	rs4791040	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr17	66938888	66938889	chr17:66938889:G:C	rs7211879	G	C	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr17	66938931	66938932	chr17:66938932:G:A	rs111363448	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr17	67039098	67039099	chr17:67039099:T:C	rs4790993	T	C	T	Sox3.mouse_HMG_2	2	1	-	9.297993569087103	7.425775678190749	TAACAATGTGATTGATG
chr17	67039118	67039119	chr17:67039119:C:T	rs2885928	C	T	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr17	67421930	67421931	chr17:67421931:T:C	rs1042673153	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.428401411895161	-2.9608800224827294	TCTCAATGTTATTCCTG
chr17	67533062	67533063	chr17:67533063:C:T	rs35966843	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr17	67549929	67549930	chr17:67549930:C:T	rs35201675	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr17	67549959	67549960	chr17:67549960:G:A	rs184503617	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr17	67552423	67552424	chr17:67552424:G:T	rs2916133	G	T	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr17	67575423	67575424	chr17:67575424:A:G	rs528014932	A	G	A	Sox3.mouse_HMG_2	15	1	-	2.0125728467487147	-1.7672265707570811	AATCAATCCCAGTAATT
chr17	67643633	67643634	chr17:67643634:T:C	rs77926287	T	C	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr17	67718523	67718524	chr17:67718524:G:A	rs9900423	G	A	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr17	67718561	67718562	chr17:67718562:G:T	rs9900610	G	T	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr17	67992920	67992921	chr17:67992921:A:G	rs190313223	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.9355231390071266	-3.4537582953707613	CATTCATGTCATTGTTT
chr17	67992931	67992932	chr17:67992932:T:C	rs28368756	T	C	C	Sox3.mouse_HMG_2	16	1	+	2.9355231390071266	1.3325300893466756	CATTCATGTCATTGTTT
chr17	68130271	68130272	chr17:68130272:A:G	rs71382164	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.460687127348347	-1.9285943070295415	CCTCAATGCTATTTTTA
chr17	68168249	68168250	chr17:68168250:C:A	rs143798484	C	A	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr17	68183673	68183674	chr17:68183674:C:G	rs11077784	C	G	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr17	68253353	68253354	chr17:68253354:C:T	rs61103052	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr17	68263406	68263407	chr17:68263407:A:T	rs114713690	A	T	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr17	68396396	68396397	chr17:68396397:G:C	rs7208111	G	C	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr17	68450661	68450662	chr17:68450662:T:C	rs2302782	T	C	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr17	68665227	68665228	chr17:68665228:T:G	rs11658862	T	G	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr17	68665231	68665232	chr17:68665232:A:G	rs11657717	A	G	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr17	68808463	68808464	chr17:68808464:C:G	rs73357092	C	G	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr17	68830697	68830698	chr17:68830698:G:C	rs7219718	G	C	G	Sox3.mouse_HMG_2	11	1	+	6.028136187091274	0.7242841650447625	CCTCAAATCTAGTGATT
chr17	68830707	68830708	chr17:68830708:C:G	rs7215620	C	G	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr17	68954607	68954608	chr17:68954608:T:C	rs7208717	T	C	t	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr17	68976108	68976109	chr17:68976109:A:T	rs2191212	A	T	a	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr17	69150590	69150591	chr17:69150591:C:T	rs721813	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr17	69246614	69246615	chr17:69246615:G:A	rs1990248	G	A	A	Sox3.mouse_HMG_2	13	1	+	3.1065032246833777	-2.945135279502934	TTACAATTTTATAGAAG
chr17	69762084	69762085	chr17:69762085:T:A	chr17:69762085:T:A	T	A	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr17	69877003	69877004	chr17:69877004:A:C	rs12103827	A	C	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr17	69917110	69917111	chr17:69917111:G:A	rs146456539	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr17	70044888	70044889	chr17:70044889:G:A	rs11871263	G	A	G	Sox3.mouse_HMG_2	7	1	-	2.7652996830050114	8.268229964247821	AAACAATCATATTGAGA
chr17	70073207	70073208	chr17:70073208:T:C	rs8070382	T	C	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr17	70074391	70074392	chr17:70074392:C:T	rs11656778	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr17	70074392	70074393	chr17:70074393:A:G	rs1990197	A	G	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr17	70076144	70076145	chr17:70076145:G:C	rs8080091	G	C	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr17	70127277	70127278	chr17:70127278:C:T	rs775760300	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr17	70164740	70164741	chr17:70164741:A:T	rs750034914	A	T	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr17	70164759	70164760	chr17:70164760:A:G	rs8066863	A	G	A	Sox3.mouse_HMG_2	4	1	+	0.6903336884714945	-5.698947745906394	CCCCAGTGGCAGTGATG
chr17	70330196	70330197	chr17:70330197:T:C	rs312691	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr17	70551530	70551531	chr17:70551531:A:G	rs35813361	A	G	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr17	70810598	70810599	chr17:70810599:G:A	rs7213302	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr17	70912952	70912953	chr17:70912953:T:A	rs41368245	T	A	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr17	70924993	70924994	chr17:70924994:A:G	rs11870183	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr17	71238666	71238667	chr17:71238667:T:C	rs17765868	T	C	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr17	71554528	71554529	chr17:71554529:T:C	rs9302938	T	C	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr17	71585083	71585084	chr17:71585084:C:G	rs9905344	C	G	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr17	71859556	71859557	chr17:71859557:A:G	rs6501509	A	G	g	Sox3.mouse_HMG_2	5	1	+	2.9302438092131995	-3.4590376251646893	GTGCAATGGCAGCGATT
chr17	71921678	71921679	chr17:71921679:C:T	rs12941303	C	T	C	Sox3.mouse_HMG_2	8	1	-	3.3731358385766335	2.1543454538321365	AGTCAAATGCATTGAGG
chr17	71939845	71939846	chr17:71939846:G:A	rs78000080	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr17	71987950	71987951	chr17:71987951:G:A	rs73996914	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr17	72137035	72137036	chr17:72137036:G:A	rs759499	G	A	G	Sox3.mouse_HMG_2	0	1	+	7.384103885262751	5.687611591560086	GTTCAATGGCAGTTATG
chr17	72373617	72373618	chr17:72373618:G:A	rs117305944	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr17	72387168	72387169	chr17:72387169:G:A	rs144647651	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr17	72397809	72397810	chr17:72397810:C:T	rs118130094	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr17	72420816	72420817	chr17:72420817:G:A	rs8080655	G	A	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr17	72530405	72530406	chr17:72530406:A:G	rs77758892	A	G	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr17	72617015	72617016	chr17:72617016:T:C	rs9889692	T	C	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr17	72710155	72710156	chr17:72710156:T:C	rs16977337	T	C	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr17	72729981	72729982	chr17:72729982:C:T	rs7221363	C	T	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr17	72783625	72783626	chr17:72783626:C:T	rs2567524	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr17	72788937	72788938	chr17:72788938:A:G	rs752237906	A	G	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr17	72968917	72968918	chr17:72968918:G:A	rs57807740	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr17	72993306	72993307	chr17:72993307:G:C	rs8080174	G	C	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr17	73045976	73045977	chr17:73045977:G:A	rs115759198	G	A	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr17	73103815	73103816	chr17:73103816:T:G	rs2172543	T	G	G	Sox3.mouse_HMG_2	8	1	+	3.1221295032120544	2.308491570207842	TCACAATTTCATGGATC
chr17	73103834	73103835	chr17:73103835:T:C	rs2172542	T	C	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr17	73315406	73315407	chr17:73315407:T:C	rs1466824	T	C	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr17	73420159	73420160	chr17:73420160:G:T	rs118130815	G	T	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr17	73420171	73420172	chr17:73420172:T:C	rs144205581	T	C	T	Sox3.mouse_HMG_2	15	1	-	2.0013640080129704	1.5676265567516288	CAGCAATGCCAGAGAAA
chr17	73420192	73420193	chr17:73420193:T:C	rs12232515	T	C	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr17	73494108	73494109	chr17:73494109:G:A	rs1872078	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr17	73684285	73684286	chr17:73684286:T:C	rs323405	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr17	73909451	73909452	chr17:73909452:A:T	rs73996865	A	T	A	Sox3.mouse_HMG_2	10	1	+	5.800570619531416	-1.1081841597838056	TATTAATGTCAGTGGAA
chr17	73973074	73973075	chr17:73973075:C:T	chr17:73973075:C:T	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr17	74125881	74125882	chr17:74125882:C:T	rs117337271	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr17	74157266	74157267	chr17:74157267:G:A	rs72848205	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr17	74253089	74253090	chr17:74253090:C:A	rs9899862	C	A	C	Sox3.mouse_HMG_2	16	1	-	5.98237572099896	6.346097410632906	CATCAATGTCATCGTAG
chr17	74490128	74490129	chr17:74490129:G:A	rs4789066	G	A	g	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr17	74538735	74538736	chr17:74538736:G:A	rs11654726	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr17	74554344	74554345	chr17:74554345:C:G	rs187063428	C	G	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr17	74639766	74639767	chr17:74639767:C:A	rs556509	C	A	A	Sox3.mouse_HMG_2	9	1	+	2.1641662412156517	-3.1271624757967085	CATCAGTGTCATGGACT
chr17	74685801	74685802	chr17:74685802:C:T	rs12451231	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr17	74800712	74800713	chr17:74800713:C:T	rs1163037179	C	T	C	Sox3.mouse_HMG_2	6	1	+	4.087885621266387	10.477167055644278	TTTCAACGTCAGTGGTG
chr17	75093575	75093576	chr17:75093576:G:T	rs60903053	G	T	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr17	75093610	75093611	chr17:75093611:G:A	rs4789134	G	A	G	Sox3.mouse_HMG_2	15	1	+	0.5196532810785094	0.9533907323398506	CCACATTGGCAGTGAGG
chr17	75238746	75238747	chr17:75238747:A:G	rs3178020	A	G	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr17	75294499	75294500	chr17:75294500:C:A	rs11654678	C	A	c	Sox3.mouse_HMG_2	8	1	-	2.278248371186288	3.0918863041905005	CATTACTTGCATTGAGT
chr17	75294523	75294524	chr17:75294524:A:G	rs78515399	A	G	a	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr17	75340863	75340864	chr17:75340864:T:G	rs55681135	T	G	T	Sox3.mouse_HMG_2	0	1	+	12.775561437712353	13.56532996949065	TAACAATTTTAGTGATG
chr17	75587595	75587596	chr17:75587596:A:G	rs62089216	A	G	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr17	75587850	75587851	chr17:75587851:T:C	rs707711	T	C	C	Sox3.mouse_HMG_2	6	1	+	2.332902608250549	-4.05637882612734	CCTCTATTCCATTGTTG
chr17	75666770	75666771	chr17:75666771:T:A	chr17:75666771:T:A	T	A	T	Sox3.mouse_HMG_2	10	1	-	3.165390556444869	-3.743364222870352	TTTCATTTTCATTGAGC
chr17	75776390	75776391	chr17:75776391:G:A	rs79695954	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr17	75776416	75776417	chr17:75776417:T:C	rs762633876	T	C	T	Sox3.mouse_HMG_2	4	1	-	2.102259006798317	-4.28702242757957	TCTCAATGGTTTTCATT
chr17	75780104	75780105	chr17:75780105:T:C	rs73352125	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr17	76039362	76039363	chr17:76039363:G:A	rs17498898	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr17	76232595	76232596	chr17:76232596:T:C	rs78438390	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr17	76372179	76372180	chr17:76372180:A:G	rs9910399	A	G	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr17	76372226	76372227	chr17:76372227:G:A	rs147936921	G	A	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr17	76420435	76420436	chr17:76420436:G:T	rs115768156	G	T	G	Sox3.mouse_HMG_2	0	1	+	1.0598449076998437	0.27007637592154543	GATCAATCCCAGTGGCC
chr17	76671916	76671917	chr17:76671917:C:T	chr17:76671917:C:T	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr17	76773401	76773402	chr17:76773402:G:A	rs11868654	G	A	A	Sox3.mouse_HMG_2	7	1	+	4.746801597646679	-1.882019897441377	TATCACTGTTTTTGATG
chr17	76858302	76858303	chr17:76858303:C:T	rs181181555	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr17	76989797	76989798	chr17:76989798:G:C	rs8070778	G	C	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr17	77037793	77037794	chr17:77037794:G:A	rs2411067	G	A	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr17	77090866	77090867	chr17:77090867:G:A	rs9913954	G	A	G	Sox3.mouse_HMG_2	13	1	+	1.511559555746493	-4.5400789484398185	GACCCATGCCAGTGATC
chr17	77148675	77148676	chr17:77148676:G:A	rs77176411	G	A	G	Sox3.mouse_HMG_2	3	1	-	0.4584871379689976	-4.398368737253224	CAACGATGGCAGTGCTG
chr17	77152912	77152913	chr17:77152913:C:T	rs72882061	C	T	C	Sox3.mouse_HMG_2	9	1	+	3.0052591375468074	3.697911680418766	CTTTCATGCCATTGATT
chr17	77177137	77177138	chr17:77177138:C:T	rs12452427	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr17	77190912	77190913	chr17:77190913:C:G	rs144815495	C	G	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr17	77341498	77341499	chr17:77341499:G:A	rs577719258	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr17	77401304	77401305	chr17:77401305:T:C	rs4789493	T	C	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr17	77460417	77460418	chr17:77460418:G:A	rs312842	G	A	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr17	77479517	77479518	chr17:77479518:A:C	rs2627211	A	C	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr17	78200531	78200532	chr17:78200532:T:C	rs77336916	T	C	T	Sox3.mouse_HMG_2	5	1	-	5.019842241287724	-1.3694391930901655	AGTCAATGGCATTTAGG
chr17	78416344	78416345	chr17:78416345:C:G	rs114079136	C	G	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr17	78424413	78424414	chr17:78424414:C:T	rs74001311	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr17	78445901	78445902	chr17:78445902:A:G	rs12451298	A	G	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr17	78506724	78506725	chr17:78506725:C:T	rs76449350	C	T	.	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr17	78650420	78650421	chr17:78650421:G:A	rs7210405	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr17	78735236	78735237	chr17:78735237:C:T	rs3936523	C	T	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr17	78738783	78738784	chr17:78738784:T:C	rs74682389	T	C	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr17	78817349	78817350	chr17:78817350:C:T	rs1043946085	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr17	79305736	79305737	chr17:79305737:C:A	rs372962035	C	A	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr17	79316502	79316503	chr17:79316503:G:A	rs12600462	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr17	79384624	79384625	chr17:79384625:G:C	rs8075631	G	C	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr17	79396926	79396927	chr17:79396927:A:T	rs1479485692	A	T	A	Sox3.mouse_HMG_2	10	1	+	1.2565529146675711	-5.65220186464765	CATCCATGGTAGGGAAG
chr17	79559117	79559118	chr17:79559118:A:G	rs955628145	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr17	79648447	79648448	chr17:79648448:G:C	rs926397720	G	C	g	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr17	79648486	79648487	chr17:79648487:T:C	rs901321548	T	C	c	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr17	79651864	79651865	chr17:79651865:C:A	rs1224160559	C	A	c	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr17	79747016	79747017	chr17:79747017:G:A	rs9907017	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr17	79904816	79904817	chr17:79904817:T:A	rs732573	T	A	A	Sox3.mouse_HMG_2	10	1	-	4.220624903831283	-2.6881298754839382	GGACCATGACATTGATA
chr17	79937946	79937947	chr17:79937947:C:T	rs75890599	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr17	80107907	80107908	chr17:80107908:G:A	rs2252455	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr17	80116281	80116282	chr17:80116282:G:A	rs12452616	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr17	80187283	80187284	chr17:80187284:C:T	rs767078968	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr17	80313180	80313181	chr17:80313181:C:T	rs200773996	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr17	80313185	80313186	chr17:80313186:G:C	rs78857404	G	C	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr17	80345335	80345336	chr17:80345336:G:A	rs9674961	G	A	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr17	80364640	80364641	chr17:80364641:G:A	chr17:80364641:G:A	G	A	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr17	80453232	80453233	chr17:80453233:G:T	rs13341123	G	T	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr17	80539623	80539624	chr17:80539624:C:T	rs76871400	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr17	80544607	80544608	chr17:80544608:G:A	rs4890040	G	A	a	Sox3.mouse_HMG_2	1	1	+	3.851867987692809	5.858255929712264	TGACAATGTTTTTGAAA
chr17	80635132	80635133	chr17:80635133:C:G	rs62068351	C	G	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr17	80639908	80639909	chr17:80639909:G:T	rs149863756	G	T	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr17	80702746	80702747	chr17:80702747:T:C	rs9894978	T	C	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr17	80761401	80761402	chr17:80761402:A:G	rs8080789	A	G	A	Sox3.mouse_HMG_2	1	1	+	5.499380633263689	3.492992691244233	TATAAATGTTAATGATA
chr17	80818065	80818066	chr17:80818066:C:T	rs9907099	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr17	80860154	80860155	chr17:80860155:G:A	rs56296322	G	A	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr17	80912139	80912140	chr17:80912140:G:A	rs4969226	G	A	A	Sox3.mouse_HMG_2	3	1	-	3.837657104229466	-1.0191987709927544	CAACTATTTTAGTGAAA
chr17	81053495	81053496	chr17:81053496:A:G	rs8080252	A	G	A	Sox3.mouse_HMG_2	6	1	-	5.485224973369196	-0.9040564610086932	GATCAATGTCCTTGGGA
chr17	81181315	81181316	chr17:81181316:A:G	rs906180	A	G	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr17	81295805	81295806	chr17:81295806:C:A	rs59063862	C	A	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr17	81408209	81408210	chr17:81408210:G:A	rs62072956	G	A	g	Sox3.mouse_HMG_2	15	1	+	6.493978163571832	6.927715614833173	GATCAATTCCAGTGCGT
chr17	81497108	81497109	chr17:81497109:C:A	rs12939651	C	A	c	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr17	81511518	81511519	chr17:81511519:G:A	rs11549222	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr17	81591057	81591058	chr17:81591058:T:C	rs62074667	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr17	81607687	81607688	chr17:81607688:G:C	rs7222241	G	C	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr17	81863390	81863391	chr17:81863391:G:T	rs113437492	G	T	G	Sox3.mouse_HMG_2	8	1	+	4.789425357064671	5.603063290068883	CATAAATGGTTTTGATT
chr17	81924919	81924920	chr17:81924920:A:C	rs186426854	A	C	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr17	82142606	82142607	chr17:82142607:C:T	rs62078310	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr17	82142621	82142622	chr17:82142622:A:G	rs9898697	A	G	G	Sox3.mouse_HMG_2	6	1	-	2.219792387291126	-4.169489047086765	TATAAATTTCAGTGCTA
chr17	82458037	82458038	chr17:82458038:A:G	rs7209788	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr17	82458080	82458081	chr17:82458081:T:C	rs145470217	T	C	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr17	82506720	82506721	chr17:82506721:G:A	rs1224117960	G	A	g	Sox3.mouse_HMG_2	9	1	-	5.356547900623583	6.049200443495541	GTTCAATGTCATTAGTC
chr17	82506737	82506738	chr17:82506738:T:C	rs9901463	T	C	N	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr17	82587053	82587054	chr17:82587054:T:C	rs9914529	T	C	T	Sox3.mouse_HMG_2	3	1	+	5.782657130658583	10.639513005880806	CTTTAATTTCAGTGAAA
chr17	82647257	82647258	chr17:82647258:T:C	rs12603129	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr17	82848726	82848727	chr17:82848727:C:G	rs56249965	C	G	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr17	82860620	82860621	chr17:82860621:C:T	rs77346257	C	T	C	Sox3.mouse_HMG_2	16	1	-	1.7152290174971598	1.503654591011909	CATCAAAGCCAGTGGCG
chr17	82889839	82889840	chr17:82889840:A:G	rs75071623	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr17	82943143	82943144	chr17:82943144:G:A	rs1044661	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr17	82943159	82943160	chr17:82943160:C:G	rs8180	C	G	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr17	82950624	82950625	chr17:82950625:C:T	rs12949939	C	T	c	Sox3.mouse_HMG_2	1	1	-	0.7181773371422178	2.724565279161676	CGCCAAAGATAGTGATT
chr17	83008779	83008780	chr17:83008780:G:T	rs11658065	G	T	g	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr17	83091817	83091818	chr17:83091818:T:C	rs548513306	T	C	t	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr17	83105941	83105942	chr17:83105942:C:T	rs28459602	C	T	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr18	141995	141996	chr18:141996:T:A	rs12604980	T	A	.	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr18	286037	286038	chr18:286038:G:C	rs62073534	G	C	G	Sox3.mouse_HMG_2	9	1	+	3.2012502446257862	8.492578961638149	GATGAATGTGAGTGAGG
chr18	352073	352074	chr18:352074:C:T	rs654312	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr18	693827	693828	chr18:693828:A:C	rs2305996	A	C	C	Sox3.mouse_HMG_2	4	1	+	4.941832814036275	-1.9662424137567838	CATCAATGATATCCATT
chr18	706588	706589	chr18:706589:A:G	rs2612102	A	G	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr18	832419	832420	chr18:832420:T:C	rs76656019	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.8572222011390134	-4.5320592332388765	GTTCAAAGGCATGGATG
chr18	841269	841270	chr18:841270:T:G	rs9964297	T	G	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr18	854048	854049	chr18:854049:T:C	rs55983927	T	C	t	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr18	885505	885506	chr18:885506:T:G	rs2846822	T	G	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr18	1510744	1510745	chr18:1510745:C:A	rs72867564	C	A	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr18	1768438	1768439	chr18:1768439:T:A	rs16942037	T	A	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr18	1998585	1998586	chr18:1998586:A:T	rs8090902	A	T	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr18	2418512	2418513	chr18:2418513:T:C	rs143810338	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr18	2441759	2441760	chr18:2441760:T:C	rs9952282	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.377792729097123	-3.0114887052807666	GATCAACTTCAGTCATG
chr18	2889993	2889994	chr18:2889994:T:A	rs116052095	T	A	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr18	3149154	3149155	chr18:3149155:C:T	rs36098676	C	T	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr18	3264742	3264743	chr18:3264743:A:G	rs1372999	A	G	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr18	3281280	3281281	chr18:3281281:T:C	rs7407066	T	C	c	Sox3.mouse_HMG_2	12	1	+	4.41591991090883	-1.6350472270219862	CAGCAATTATACTGATT
chr18	3319211	3319212	chr18:3319212:A:G	rs1785265	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr18	3468802	3468803	chr18:3468803:A:G	rs8083002	A	G	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr18	3615228	3615229	chr18:3615229:T:G	rs12964324	T	G	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr18	4193142	4193143	chr18:4193143:A:T	rs11878026	A	T	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr18	4369604	4369605	chr18:4369605:C:T	rs28496698	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr18	4369633	4369634	chr18:4369634:G:A	chr18:4369634:G:A	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr18	4415793	4415794	chr18:4415794:A:G	rs281017	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr18	4797073	4797074	chr18:4797074:A:G	rs6506251	A	G	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr18	4840181	4840182	chr18:4840182:C:T	rs4383244	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr18	4947183	4947184	chr18:4947184:A:G	rs8092847	A	G	A	Sox3.mouse_HMG_2	14	1	-	6.2681432610263235	4.254996167186324	TTTCAATTGCATTGTGA
chr18	5029736	5029737	chr18:5029737:G:A	rs8087779	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr18	5029744	5029745	chr18:5029745:A:G	rs8089379	A	G	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr18	5237162	5237163	chr18:5237163:C:G	rs9956056	C	G	C	Sox3.mouse_HMG_2	11	1	-	6.530388515031031	1.22653649298452	CAGCAATGTAAGTGATG
chr18	5355274	5355275	chr18:5355275:G:A	rs28418271	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr18	5410574	5410575	chr18:5410575:A:G	rs3817466	A	G	G	Sox3.mouse_HMG_2	10	1	+	2.499893365199133	-4.408861414116087	CCTCAGTGGCAGTGGTC
chr18	5500021	5500022	chr18:5500022:T:C	rs9960603	T	C	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr18	5577258	5577259	chr18:5577259:T:C	rs11876037	T	C	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr18	5887633	5887634	chr18:5887634:C:T	rs7504258	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr18	5947874	5947875	chr18:5947875:G:A	rs1893192	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr18	5983703	5983704	chr18:5983704:T:C	rs189949247	T	C	T	Sox3.mouse_HMG_2	6	1	+	8.772996877413119	2.383715443035227	ACACAATGGCAGTGATG
chr18	5983730	5983731	chr18:5983731:A:G	rs572933	A	G	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr18	6113150	6113151	chr18:6113151:A:T	rs11876188	A	T	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr18	6505597	6505598	chr18:6505598:G:A	rs11873891	G	A	A	Sox3.mouse_HMG_2	7	1	+	3.4205495781701916	-3.2082719169178637	ATGCAATGTTATTTATG
chr18	6668906	6668907	chr18:6668907:C:T	rs181072965	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr18	6955676	6955677	chr18:6955677:G:T	rs949215	G	T	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr18	6997818	6997819	chr18:6997819:A:C	rs12961939	A	C	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr18	7113139	7113140	chr18:7113140:T:G	rs16951262	T	G	T	Sox3.mouse_HMG_2	4	1	-	7.948077382413148	1.0400021546200904	GCTCAATGCTATTGTCT
chr18	7373677	7373678	chr18:7373678:A:G	rs6506501	A	G	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr18	7823286	7823287	chr18:7823287:A:G	rs941719027	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr18	7950961	7950962	chr18:7950962:T:A	rs75032016	T	A	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr18	7993104	7993105	chr18:7993105:G:A	rs1596383	G	A	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr18	8028803	8028804	chr18:8028804:G:A	rs145334821	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr18	8142164	8142165	chr18:8142165:G:A	rs10163540	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr18	8142196	8142197	chr18:8142197:G:C	rs186903977	G	C	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr18	8241987	8241988	chr18:8241988:G:A	rs11081370	G	A	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr18	8290708	8290709	chr18:8290709:T:A	rs78874972	T	A	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr18	8340311	8340312	chr18:8340312:C:T	rs34727991	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr18	8470777	8470778	chr18:8470778:T:C	rs3894269	T	C	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr18	8515340	8515341	chr18:8515341:A:G	rs73388235	A	G	A	Sox3.mouse_HMG_2	5	1	+	5.043835061700135	-1.345446372677754	TATTAATGACAGTGGTC
chr18	8662962	8662963	chr18:8662963:G:A	rs4798668	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr18	8730241	8730242	chr18:8730242:A:T	rs2017162	A	T	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr18	8769264	8769265	chr18:8769265:A:C	rs624193	A	C	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr18	8867836	8867837	chr18:8867837:C:T	rs632355	C	T	C	Sox3.mouse_HMG_2	15	1	-	4.684502977654697	5.118240428916038	GTTCAATTCCAATGAGA
chr18	8944904	8944905	chr18:8944905:A:G	rs2062014	A	G	A	Sox3.mouse_HMG_2	4	1	+	3.527242124239442	-2.862039310138447	GTTCAATGCCAGTCACT
chr18	8944933	8944934	chr18:8944934:G:A	rs73941716	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr18	9478294	9478295	chr18:9478295:T:G	rs1561998	T	G	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr18	9719333	9719334	chr18:9719334:A:T	rs56395148	A	T	A	Sox3.mouse_HMG_2	12	1	-	5.295895345601684	-0.7550717923291312	GATCAAATTTATTTATT
chr18	9719346	9719347	chr18:9719347:T:G	rs75890376	T	G	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr18	9915565	9915566	chr18:9915566:A:G	rs74544606	A	G	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr18	10122128	10122129	chr18:10122129:G:A	rs1941066	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr18	10241879	10241880	chr18:10241880:A:T	rs7231402	A	T	A	Sox3.mouse_HMG_2	12	1	-	4.424090320959707	-1.6268768169711092	CTTCTATTTTAGTGAAA
chr18	10250869	10250870	chr18:10250870:T:C	rs117802637	T	C	T	Sox3.mouse_HMG_2	11	1	-	2.683438412984174	7.25492254131746	AATCAACTGCAATGATG
chr18	10323604	10323605	chr18:10323605:C:G	rs206622	C	G	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr18	10323639	10323640	chr18:10323640:A:G	rs206621	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr18	10405708	10405709	chr18:10405709:C:T	rs571540243	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr18	10441472	10441473	chr18:10441473:A:G	rs11665266	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.879820303606183	-1.5094611307717065	GCCCAATGTCAGTGGTG
chr18	10477606	10477607	chr18:10477607:T:C	rs666064	T	C	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr18	10565283	10565284	chr18:10565284:G:C	rs545056	G	C	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr18	10640994	10640995	chr18:10640995:A:G	rs573761	A	G	N	Sox3.mouse_HMG_2	5	1	+	2.223133531216276	-4.1661479031616135	CATCAATGTCACTGCCT
chr18	10715852	10715853	chr18:10715853:A:G	rs28712767	A	G	G	Sox3.mouse_HMG_2	14	1	-	4.0632228920644415	2.050075798224442	AATCAATGGTATTTTGT
chr18	11483973	11483974	chr18:11483974:T:G	rs495434	T	G	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr18	11483979	11483980	chr18:11483980:A:C	rs572045	A	C	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr18	11524057	11524058	chr18:11524058:A:T	rs57621243	A	T	.	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr18	11553842	11553843	chr18:11553843:T:C	rs1551898	T	C	.	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr18	11695551	11695552	chr18:11695552:A:G	rs17515325	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr18	11923736	11923737	chr18:11923737:A:G	chr18:11923737:A:G	A	G	-	Sox3.mouse_HMG_2	4	1	+	9.235198090703994	2.8459166563261022	AATCAGTGATATTGATG
chr18	11945481	11945482	chr18:11945482:T:C	rs649039	T	C	C	Sox3.mouse_HMG_2	8	1	+	5.798696900155776	4.544274934000106	TAACAATTTGATTGAGT
chr18	11994598	11994599	chr18:11994599:C:A	rs669838	C	A	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr18	11994599	11994600	chr18:11994600:G:A	rs74747865	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr18	12274940	12274941	chr18:12274941:A:G	rs9303764	A	G	N	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr18	12819616	12819617	chr18:12819617:C:T	rs7227207	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr18	12856078	12856079	chr18:12856079:G:A	rs73404489	G	A	G	Sox3.mouse_HMG_2	1	1	+	3.601414373066909	5.607802315086367	GGTCAATGTCAGCGGAG
chr18	13067727	13067728	chr18:13067728:G:T	rs7243536	G	T	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr18	13067905	13067906	chr18:13067906:T:C	rs150357881	T	C	T	Sox3.mouse_HMG_2	5	1	-	9.79045037251901	3.4011689381411205	TATCAATTTTAGTGGGA
chr18	13269520	13269521	chr18:13269521:T:A	rs114485273	T	A	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr18	13379477	13379478	chr18:13379478:G:A	rs17681721	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr18	13413463	13413464	chr18:13413464:G:A	rs7240292	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr18	13496304	13496305	chr18:13496305:G:A	rs55938405	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr18	13590752	13590753	chr18:13590753:A:G	rs4797788	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr18	13809898	13809899	chr18:13809899:T:G	rs7230604	T	G	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr18	13809899	13809900	chr18:13809900:G:C	rs7229762	G	C	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr18	14087077	14087078	chr18:14087078:T:C	rs56066761	T	C	t	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr18	14970118	14970119	chr18:14970119:G:A	rs786020	G	A	.	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr18	21215516	21215517	chr18:21215517:T:G	rs10438921	T	G	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr18	21943616	21943617	chr18:21943617:A:T	rs9948997	A	T	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr18	22018457	22018458	chr18:22018458:A:G	rs35261883	A	G	A	Sox3.mouse_HMG_2	12	1	-	7.367803054361149	1.3168359164303323	CATCAAGTTCATTGGTT
chr18	22106659	22106660	chr18:22106660:G:A	rs76265129	G	A	G	Sox3.mouse_HMG_2	9	1	-	3.0729759263251477	3.765628469197108	AGGCAATGACAGTGGTG
chr18	22195702	22195703	chr18:22195703:C:T	rs115311084	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr18	22285038	22285039	chr18:22285039:T:G	rs145128575	T	G	T	Sox3.mouse_HMG_2	2	1	+	1.4621563535422375	-3.691718313137654	GCTCTATGCCACTGATT
chr18	22448672	22448673	chr18:22448673:C:A	rs1352745677	C	A	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr18	22448676	22448677	chr18:22448677:A:C	rs1227186832	A	C	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr18	22683687	22683688	chr18:22683688:C:T	rs7227521	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr18	22692471	22692472	chr18:22692472:T:G	rs529768981	T	G	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr18	23178345	23178346	chr18:23178346:A:G	rs34302357	A	G	A	Sox3.mouse_HMG_2	15	1	-	1.3293358949327823	-2.450463522573014	GCTCAGTGGCAGTGCTG
chr18	23203758	23203759	chr18:23203759:A:G	rs11875837	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.8096136506641525	-3.5796677837137376	GAAAAATGTCATTGCTT
chr18	23258071	23258072	chr18:23258072:A:G	rs78479391	A	G	A	Sox3.mouse_HMG_2	6	1	-	6.278537997468003	-0.1107434369098857	AAACAATGTCAGTCATT
chr18	23295809	23295810	chr18:23295810:G:A	rs2337025	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr18	23295828	23295829	chr18:23295829:A:G	rs2337024	A	G	G	Sox3.mouse_HMG_2	2	1	-	4.5736223997120495	-1.793274906813694	TATCCACGTCATTGATG
chr18	23394693	23394694	chr18:23394694:G:A	rs9955031	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr18	23591180	23591181	chr18:23591181:G:A	rs4598991	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr18	23677670	23677671	chr18:23677671:T:C	rs12955607	T	C	T	Sox3.mouse_HMG_2	6	1	+	1.3129187700412897	-5.076362664336602	GCTCAATGGCAGGAATG
chr18	23970664	23970665	chr18:23970665:A:G	rs73400386	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr18	24319617	24319618	chr18:24319618:T:C	rs56033359	T	C	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr18	24386403	24386404	chr18:24386404:C:T	rs8086289	C	T	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr18	24386450	24386451	chr18:24386451:G:A	rs8085403	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr18	24543996	24543997	chr18:24543997:T:G	rs61191439	T	G	T	Sox3.mouse_HMG_2	15	1	+	2.5530250206201934	-0.18410212409983223	GCTCCATTTTATAGATG
chr18	24701904	24701905	chr18:24701905:T:C	rs7235400	T	C	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr18	24763807	24763808	chr18:24763808:C:T	rs7233467	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr18	25090399	25090400	chr18:25090400:T:C	rs147921336	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr18	25163934	25163935	chr18:25163935:A:G	rs8085882	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr18	25308714	25308715	chr18:25308715:C:G	rs7237416	C	G	G	Sox3.mouse_HMG_2	3	1	+	5.335483644219314	-0.7150356656699817	CCTCTATTCCAGTGATT
chr18	25667822	25667823	chr18:25667823:A:G	rs1838750	A	G	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr18	25815128	25815129	chr18:25815129:A:C	rs28370288	A	C	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr18	26460896	26460897	chr18:26460897:G:A	rs141459070	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr18	26697349	26697350	chr18:26697350:G:C	rs494078	G	C	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr18	26787608	26787609	chr18:26787609:C:G	rs11663064	C	G	C	Sox3.mouse_HMG_2	10	1	-	3.945699977389779	3.945699977389779	GATCAATGTGGTTGAAA
chr18	27857787	27857788	chr18:27857788:T:C	rs4129156	T	C	t	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr18	27861359	27861360	chr18:27861360:A:G	rs28649543	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr18	27900896	27900897	chr18:27900897:A:T	rs12960084	A	T	T	Sox3.mouse_HMG_2	2	1	-	10.629142389608129	7.347485613824592	AGTCAATTTTAGTGAAA
chr18	27901753	27901754	chr18:27901754:A:G	rs12956039	A	G	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr18	27965641	27965642	chr18:27965642:A:C	rs1785613	A	C	a	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr18	28387879	28387880	chr18:28387880:G:T	rs7237578	G	T	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr18	28718915	28718916	chr18:28718916:A:G	rs9952451	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr18	29019566	29019567	chr18:29019567:G:A	rs1941888	G	A	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr18	29387085	29387086	chr18:29387086:A:G	rs11083328	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr18	29513415	29513416	chr18:29513416:T:C	rs9952040	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr18	29653920	29653921	chr18:29653921:T:C	rs1492811	T	C	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr18	30177881	30177882	chr18:30177882:G:T	rs145085673	G	T	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr18	30608963	30608964	chr18:30608964:G:A	rs1478539	G	A	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr18	30811848	30811849	chr18:30811849:A:T	rs17711533	A	T	A	Sox3.mouse_HMG_2	6	1	-	3.8777705118463492	-3.030304715946707	GTGCAATGTTATTTATC
chr18	31100277	31100278	chr18:31100278:C:T	rs1550236	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr18	31476680	31476681	chr18:31476681:C:T	rs72925171	C	T	-	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr18	31610973	31610974	chr18:31610974:T:G	rs963316273	T	G	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr18	31679624	31679625	chr18:31679625:G:A	rs116688005	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr18	31712154	31712155	chr18:31712155:G:A	rs12326689	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr18	31963240	31963241	chr18:31963241:T:C	rs6506951	T	C	C	Sox3.mouse_HMG_2	15	1	+	4.674154167856873	0.8943547503510774	CCTCAATTATGGTGATA
chr18	32298273	32298274	chr18:32298274:C:T	rs77000096	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr18	33135704	33135705	chr18:33135705:A:T	rs271583	A	T	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr18	33572241	33572242	chr18:33572242:G:T	rs77056525	G	T	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr18	34222185	34222186	chr18:34222186:C:T	rs147759424	C	T	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr18	34523277	34523278	chr18:34523278:A:G	rs77702493	A	G	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr18	34752361	34752362	chr18:34752362:C:G	rs2040299	C	G	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr18	34752368	34752369	chr18:34752369:A:G	rs4799777	A	G	G	Sox3.mouse_HMG_2	4	1	+	3.124818593413332	-3.2644628409645575	TTTCAAAGGCAGTGAGA
chr18	34773519	34773520	chr18:34773520:A:T	rs575055746	A	T	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr18	34852152	34852153	chr18:34852153:A:G	rs1786606	A	G	G	Sox3.mouse_HMG_2	15	1	-	11.348154627580175	7.56835521007438	CATTAATTGCATTGATA
chr18	34894114	34894115	chr18:34894115:C:T	rs2422206	C	T	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr18	34913788	34913789	chr18:34913789:C:T	rs8083966	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr18	35107307	35107308	chr18:35107308:G:A	rs9807664	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr18	36196163	36196164	chr18:36196164:G:A	rs13381368	G	A	G	Sox3.mouse_HMG_2	8	1	+	4.6824796262375	3.4636892414930016	GAGCAATGGCATTGTCA
chr18	36196167	36196168	chr18:36196168:T:G	rs13381980	T	G	T	Sox3.mouse_HMG_2	12	1	+	4.6824796262375	-1.704109046434217	GAGCAATGGCATTGTCA
chr18	36410101	36410102	chr18:36410102:A:G	rs58240850	A	G	A	Sox3.mouse_HMG_2	7	1	-	2.8511647206500443	-2.6517655605927657	CTAAAATTGTAGTGATG
chr18	36510950	36510951	chr18:36510951:A:T	rs4799419	A	T	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr18	36510996	36510997	chr18:36510997:A:G	rs7242523	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr18	36636540	36636541	chr18:36636541:A:G	rs11660710	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr18	37395690	37395691	chr18:37395691:A:G	rs621118	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr18	37935213	37935214	chr18:37935214:A:C	rs80337214	A	C	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr18	38040926	38040927	chr18:38040927:T:G	rs1026937	T	G	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr18	38421834	38421835	chr18:38421835:G:A	rs1806540	G	A	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr18	38517688	38517689	chr18:38517689:C:T	rs1426677	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.407048372018298	-3.644590132168014	GAAAAATGGCATTGGAT
chr18	38948506	38948507	chr18:38948507:A:G	rs4239417	A	G	G	Sox3.mouse_HMG_2	8	1	-	1.548024741028279	0.29360277487260905	CATCTATGTTGGTGAAG
chr18	39197127	39197128	chr18:39197128:T:G	rs9959683	T	G	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr18	39329962	39329963	chr18:39329963:C:T	rs9955938	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr18	39829997	39829998	chr18:39829998:A:G	rs12962977	A	G	A	Sox3.mouse_HMG_2	9	1	-	1.5414512587351779	0.8487987158632186	GGTCAAGGCTAGAGATA
chr18	40313119	40313120	chr18:40313120:G:T	rs9635936	G	T	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr18	40431937	40431938	chr18:40431938:C:T	rs12327278	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr18	40493502	40493503	chr18:40493503:C:T	rs203179	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr18	40868557	40868558	chr18:40868558:G:A	rs2567174	G	A	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr18	40877141	40877142	chr18:40877142:C:A	rs79062850	C	A	c	Sox3.mouse_HMG_2	10	1	-	2.0243199490848944	2.0243199490848944	CATCAAGGTCGTTGAAA
chr18	41406934	41406935	chr18:41406935:T:C	rs6507415	T	C	T	Sox3.mouse_HMG_2	5	1	-	8.979811870228104	2.5905304358502175	CATCAATGTCAGTGTGC
chr18	41539346	41539347	chr18:41539347:C:T	rs2587634	C	T	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr18	41911692	41911693	chr18:41911693:T:C	rs8089834	T	C	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr18	42365560	42365561	chr18:42365561:A:T	rs8087788	A	T	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr18	42429479	42429480	chr18:42429480:C:T	rs9960781	C	T	c	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr18	42455181	42455182	chr18:42455182:A:C	rs346188	A	C	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr18	42756615	42756616	chr18:42756616:G:A	rs559216	G	A	G	Sox3.mouse_HMG_2	2	1	-	9.50889176945227	15.875789075978014	GCCCAATTTTATTGATT
chr18	43081819	43081820	chr18:43081820:A:C	rs28550022	A	C	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr18	43661855	43661856	chr18:43661856:A:C	rs73471756	A	C	A	Sox3.mouse_HMG_2	5	1	-	2.2380833536045386	2.7568771470197078	GCTTATTGCTAGTGATG
chr18	43970816	43970817	chr18:43970817:A:G	rs6507555	A	G	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr18	44309243	44309244	chr18:44309244:A:G	rs7242959	A	G	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr18	44309247	44309248	chr18:44309248:G:A	rs36096597	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr18	44341626	44341627	chr18:44341627:C:A	rs140542218	C	A	c	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr18	44464546	44464547	chr18:44464547:C:T	rs76615419	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr18	44802182	44802183	chr18:44802183:G:C	rs1465969	G	C	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr18	45270682	45270683	chr18:45270683:C:T	rs35962720	C	T	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr18	45548782	45548783	chr18:45548783:C:G	rs2542975	C	G	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr18	45658056	45658057	chr18:45658057:C:T	rs7237704	C	T	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr18	45746082	45746083	chr18:45746083:G:A	rs1295257711	G	A	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr18	45983385	45983386	chr18:45983386:G:A	rs920294	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr18	46237865	46237866	chr18:46237866:A:G	rs7228365	A	G	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr18	46321598	46321599	chr18:46321599:G:A	rs996299939	G	A	G	Sox3.mouse_HMG_2	16	1	+	2.9053170306590235	2.693742604173773	TGTGAATGTCCTTGATG
chr18	46461186	46461187	chr18:46461187:A:G	rs2365332	A	G	G	Sox3.mouse_HMG_2	11	1	-	2.7704629885474183	-3.9139112109129175	GCTCAAGGTCATTGGGA
chr18	46576750	46576751	chr18:46576751:G:C	rs521940	G	C	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr18	46750878	46750879	chr18:46750879:T:C	rs4624285	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr18	46760347	46760348	chr18:46760348:T:G	rs8085861	T	G	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr18	47203692	47203693	chr18:47203693:T:C	rs919655625	T	C	T	Sox3.mouse_HMG_2	6	1	+	2.6975587200489017	-3.691722714328987	GTTAAATGACAGTGGTT
chr18	47344127	47344128	chr18:47344128:T:C	rs953291	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr18	47406624	47406625	chr18:47406625:A:G	rs11876595	A	G	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr18	47470563	47470564	chr18:47470564:A:T	chr18:47470564:A:T	A	T	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr18	48018680	48018681	chr18:48018681:G:T	rs12967850	G	T	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr18	48047076	48047077	chr18:48047077:T:C	rs111245309	T	C	T	Sox3.mouse_HMG_2	15	1	+	1.0343640119594686	-2.7454354055463273	CCTCAGTGGCAGGGATT
chr18	48094262	48094263	chr18:48094263:G:A	rs12956689	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr18	48338568	48338569	chr18:48338569:C:T	rs111917360	C	T	C	Sox3.mouse_HMG_2	1	1	-	2.5691413507074827	4.575529292726941	GGACACTGTCAGTGAAA
chr18	48423873	48423874	chr18:48423874:T:C	rs1387291	T	C	T	Sox3.mouse_HMG_2	15	1	+	3.704041073840103	-0.07575834366569284	ACTTAATGTCATTAATT
chr18	48472147	48472148	chr18:48472148:T:C	rs9956450	T	C	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr18	48580258	48580259	chr18:48580259:A:G	rs10438972	A	G	G	Sox3.mouse_HMG_2	2	1	-	1.597376184313481	-4.769521122212264	CCTCAGTGCCAGTGACC
chr18	48738319	48738320	chr18:48738320:T:G	rs4939798	T	G	T	Sox3.mouse_HMG_2	2	1	+	3.119688535947793	-2.034186130732099	TTTCAATGTCATTTCTT
chr18	48905902	48905903	chr18:48905903:C:T	rs62103339	C	T	C	Sox3.mouse_HMG_2	8	1	-	1.1758963299624032	-0.04289405478209403	CCTCAAGGGTAGTGGGG
chr18	48960674	48960675	chr18:48960675:T:C	rs139770888	T	C	T	Sox3.mouse_HMG_2	14	1	+	3.355087795634211	1.3419407017942113	AAACAATGTAAGTGTTT
chr18	48960680	48960681	chr18:48960681:G:A	rs78574740	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr18	49095045	49095046	chr18:49095046:C:T	rs77085463	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr18	49127552	49127553	chr18:49127553:C:T	rs532913418	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr18	49127585	49127586	chr18:49127586:T:C	rs145779055	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr18	49189913	49189914	chr18:49189914:G:C	rs55658710	G	C	g	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr18	49412976	49412977	chr18:49412977:G:C	rs12606885	G	C	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr18	49631955	49631956	chr18:49631956:C:A	rs9304382	C	A	c	Sox3.mouse_HMG_2	13	1	-	2.681223271997747	-3.7060367669294645	GAACTATGGTATTGCTT
chr18	49685788	49685789	chr18:49685789:G:A	rs66781087	G	A	g	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr18	49685801	49685802	chr18:49685802:A:G	rs116832726	A	G	A	Sox3.mouse_HMG_2	10	1	+	5.350657069821547	-1.5580977094936748	CCTCATTTTTATTGAGA
chr18	49849181	49849182	chr18:49849182:A:C	rs485835	A	C	C	Sox3.mouse_HMG_2	12	1	-	4.405563657451843	-1.9810250152198718	ACTCCATGCTATTGAGT
chr18	49895389	49895390	chr18:49895390:C:A	rs867263677	C	A	C	Sox3.mouse_HMG_2	11	1	-	3.725332491777936	5.1058546691917615	TTTGAATGTCAGTGTTG
chr18	49938472	49938473	chr18:49938473:A:G	rs12457612	A	G	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr18	50422631	50422632	chr18:50422632:A:C	rs9963208	A	C	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr18	50619677	50619678	chr18:50619678:T:G	rs3867257	T	G	T	Sox3.mouse_HMG_2	11	1	+	8.786474068451815	7.405951891037989	TTTCAGTGTCATTGATG
chr18	50704525	50704526	chr18:50704526:C:T	rs7227230	C	T	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr18	51051221	51051222	chr18:51051222:T:C	rs76642607	T	C	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr18	51051246	51051247	chr18:51051247:G:C	rs544824712	G	C	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr18	51731239	51731240	chr18:51731240:G:A	rs16953869	G	A	G	Sox3.mouse_HMG_2	0	1	-	4.539114468232393	4.053979453978285	CGTCACTTGTATTGTTT
chr18	51759564	51759565	chr18:51759565:G:A	rs11660810	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr18	51852939	51852940	chr18:51852940:C:G	rs10853607	C	G	C	Sox3.mouse_HMG_2	3	1	+	2.759425505742807	-3.2910938041464917	CATCAATTTCTTTGTAC
chr18	52501270	52501271	chr18:52501271:G:T	rs16955089	G	T	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr18	52508972	52508973	chr18:52508973:A:G	rs1145259	A	G	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr18	52764200	52764201	chr18:52764201:G:C	rs1835716	G	C	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr18	53847667	53847668	chr18:53847668:C:A	rs7237478	C	A	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr18	53947246	53947247	chr18:53947247:T:G	rs72922020	T	G	T	Sox3.mouse_HMG_2	4	1	-	6.958057043118398	0.049981815325341905	TTTCAATGGCAGTTATT
chr18	53957639	53957640	chr18:53957640:G:A	rs68015088	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr18	53985357	53985358	chr18:53985358:C:G	rs9962558	C	G	G	Sox3.mouse_HMG_2	8	1	-	2.8664322792594805	2.425648246108023	CTTCAATTGTAGTTACG
chr18	53985370	53985371	chr18:53985371:A:C	rs9962484	A	C	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr18	54161043	54161044	chr18:54161044:A:G	rs1145310	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr18	54233467	54233468	chr18:54233468:G:A	rs114730458	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr18	54461862	54461863	chr18:54461863:C:T	rs5004435	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr18	54790095	54790096	chr18:54790096:G:T	rs192666077	G	T	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr18	54790096	54790097	chr18:54790097:G:A	rs185591737	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr18	54828274	54828275	chr18:54828275:A:G	rs12964118	A	G	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr18	55122766	55122767	chr18:55122767:G:A	rs9950306	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr18	55405303	55405304	chr18:55405304:G:A	rs2958165	G	A	G	Sox3.mouse_HMG_2	0	1	-	4.776187953917865	4.291052939663756	CATCAAAGTAAGTGATG
chr18	55918820	55918821	chr18:55918821:A:G	rs9950331	A	G	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr18	56233834	56233835	chr18:56233835:A:C	rs1019893810	A	C	A	Sox3.mouse_HMG_2	10	1	+	2.640714242223576	-4.268040537091643	TATCATTGCCAGAGATT
chr18	56447669	56447670	chr18:56447670:T:A	rs167309	T	A	T	Sox3.mouse_HMG_2	5	1	-	5.982626770054305	-0.9254484577387526	AGTCAATGTGAGTGAAG
chr18	57103646	57103647	chr18:57103647:A:G	rs2156081	A	G	G	Sox3.mouse_HMG_2	1	1	+	3.8951505230924552	1.8887625810729969	CATCCTTTTTATTGATA
chr18	57277043	57277044	chr18:57277044:C:T	rs9319914	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr18	57432174	57432175	chr18:57432175:C:T	rs79138467	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr18	57543720	57543721	chr18:57543721:C:G	rs571718	C	G	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr18	57668007	57668008	chr18:57668008:A:G	rs4940499	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr18	57706360	57706361	chr18:57706361:A:G	rs73443026	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr18	57712558	57712559	chr18:57712559:A:C	rs57551682	A	C	C	Sox3.mouse_HMG_2	6	1	-	5.406555221723929	-1.5015200060691294	TTTCAATTTTATTTAGA
chr18	57715852	57715853	chr18:57715853:G:A	rs77865564	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr18	57902569	57902570	chr18:57902570:G:A	rs17754379	G	A	g	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr18	57962407	57962408	chr18:57962408:A:G	rs12454166	A	G	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr18	57984938	57984939	chr18:57984939:A:C	rs7236724	A	C	t	Sox3.mouse_HMG_2	9	1	-	5.198792253282823	-0.7851890066014953	CATGAATGCTTTTGATT
chr18	57984939	57984940	chr18:57984940:G:A	rs7235042	G	A	G	Sox3.mouse_HMG_2	8	1	-	5.198792253282823	6.453214219438493	CATGAATGCTTTTGATT
chr18	58293317	58293318	chr18:58293318:C:T	rs9956458	C	T	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr18	58293344	58293345	chr18:58293345:G:T	rs9955824	G	T	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr18	58615725	58615726	chr18:58615726:C:T	rs76392387	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr18	58639012	58639013	chr18:58639013:A:C	rs74827833	A	C	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr18	58930286	58930287	chr18:58930287:T:C	rs11664500	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr18	59216045	59216046	chr18:59216046:G:C	rs11152135	G	C	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr18	59276251	59276252	chr18:59276252:C:T	rs77759734	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.1375784465451906	-3.914060057641121	CCACAATGGTACTGACT
chr18	59279468	59279469	chr18:59279469:A:G	rs483775	A	G	G	Sox3.mouse_HMG_2	2	1	-	2.3177187465134352	-4.049178560012309	TGTCAATTGCTGTGGTG
chr18	59402532	59402533	chr18:59402533:G:T	rs911061995	G	T	G	Sox3.mouse_HMG_2	9	1	-	2.9973239312994866	-2.294004785712873	CAGCAATGGCAGTGTCA
chr18	59469307	59469308	chr18:59469308:T:C	rs895010	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr18	59478641	59478642	chr18:59478642:T:C	rs610174	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.9047197930621245	-1.4845616413157643	TTTCAATATTAGTGGTT
chr18	59521129	59521130	chr18:59521130:A:G	rs59848743	A	G	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr18	59549787	59549788	chr18:59549788:A:G	rs763466400	A	G	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr18	59703473	59703474	chr18:59703474:A:G	rs79527989	A	G	A	Sox3.mouse_HMG_2	1	1	+	6.804470496467674	4.798082554448214	GATCAATTCTAGAGAGG
chr18	59708425	59708426	chr18:59708426:T:C	rs7238514	T	C	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr18	59818353	59818354	chr18:59818354:C:G	rs72984969	C	G	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr18	59877457	59877458	chr18:59877458:C:T	rs75287245	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr18	59877472	59877473	chr18:59877473:A:G	rs62094865	A	G	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr18	59877666	59877667	chr18:59877667:T:C	rs7230257	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr18	59882368	59882369	chr18:59882369:A:G	rs58278370	A	G	A	Sox3.mouse_HMG_2	16	1	-	3.1592239317246444	1.5562308820641935	GATCAACGTTAGAGAGT
chr18	59897032	59897033	chr18:59897033:A:G	rs17781459	A	G	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr18	59987365	59987366	chr18:59987366:T:C	rs755681	T	C	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr18	60560848	60560849	chr18:60560849:A:C	rs12962133	A	C	A	Sox3.mouse_HMG_2	4	1	+	5.367519417173925	-1.5405558106191313	AACCAATTTTAGTGACT
chr18	60624245	60624246	chr18:60624246:T:C	rs9947661	T	C	C	Sox3.mouse_HMG_2	9	1	+	5.223582819160613	4.530930276288654	ACTCAGTGGTATTGAAA
chr18	60667825	60667826	chr18:60667826:T:C	rs2877572	T	C	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr18	60667826	60667827	chr18:60667827:T:C	rs2877571	T	C	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr18	60935089	60935090	chr18:60935090:T:C	rs78214831	T	C	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr18	60981871	60981872	chr18:60981872:C:T	rs143780432	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr18	61096750	61096751	chr18:61096751:G:A	rs73000408	G	A	G	Sox3.mouse_HMG_2	16	1	-	3.239874493200852	4.842867542861303	TATGAAATTTATTGATC
chr18	62074209	62074210	chr18:62074210:T:G	rs62095277	T	G	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr18	62287971	62287972	chr18:62287972:G:A	rs77036427	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr18	62287987	62287988	chr18:62287988:G:A	rs79637446	G	A	G	Sox3.mouse_HMG_2	7	1	+	4.949684518563105	-1.6791369765249513	GGTCCATGTCAGTGACT
chr18	62332446	62332447	chr18:62332447:A:G	rs4547437	A	G	G	Sox3.mouse_HMG_2	4	1	+	3.965726130796609	-2.423555303581281	AATCAATTCCATTTTTA
chr18	62378970	62378971	chr18:62378971:C:T	rs12954567	C	T	C	Sox3.mouse_HMG_2	7	1	-	11.599605407668438	4.97078391258038	CATCAATGTCATTGTGG
chr18	62452261	62452262	chr18:62452262:A:G	rs73465653	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr18	62780925	62780926	chr18:62780926:T:A	rs12961401	T	A	T	Sox3.mouse_HMG_2	6	1	+	6.707780969544671	-0.20029425824838548	TTTCAATGCCAGTGGAA
chr18	62792122	62792123	chr18:62792123:T:G	rs188541169	T	G	T	Sox3.mouse_HMG_2	0	1	+	5.040412714959022	5.830181246737318	TATCATTTTCAGTGACT
chr18	62982743	62982744	chr18:62982744:T:C	rs499836	T	C	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr18	62982752	62982753	chr18:62982753:G:A	rs114119442	G	A	A	Sox3.mouse_HMG_2	14	1	-	1.5412947271594066	3.554441820999407	CATCAAAGCCAGTGCTC
chr18	63041492	63041493	chr18:63041493:A:G	rs6567315	A	G	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr18	63074980	63074981	chr18:63074981:G:A	rs76715611	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr18	63179863	63179864	chr18:63179864:C:G	rs12457371	C	G	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr18	63239246	63239247	chr18:63239247:T:G	rs17070861	T	G	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr18	63287343	63287344	chr18:63287344:A:T	rs2551397	A	T	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr18	63399888	63399889	chr18:63399889:C:T	rs9965766	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr18	63530559	63530560	chr18:63530560:A:G	rs10503081	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.656129154685275	-2.7331522796926127	CATCTATTGTTTTGATT
chr18	63924655	63924656	chr18:63924656:C:T	rs62097493	C	T	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr18	64023348	64023349	chr18:64023349:C:T	rs66531482	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr18	64404452	64404453	chr18:64404453:T:C	rs55993352	T	C	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr18	64474815	64474816	chr18:64474816:A:T	rs12966295	A	T	A	Sox3.mouse_HMG_2	15	1	-	3.545070168528173	1.2416804750694888	TCACAACTGCATTGATG
chr18	64726234	64726235	chr18:64726235:C:G	rs12954677	C	G	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr18	64732178	64732179	chr18:64732179:T:C	rs1506226	T	C	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr18	65280078	65280079	chr18:65280079:A:G	rs682165	A	G	A	Sox3.mouse_HMG_2	6	1	-	5.283292650472244	-1.1059887839056457	GAACAATGGCCTTGAGT
chr18	65280094	65280095	chr18:65280095:A:G	rs577092165	A	G	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr18	65500615	65500616	chr18:65500616:G:T	rs1444068	G	T	T	Sox3.mouse_HMG_2	11	1	+	1.2858145830085843	2.6663367604224084	CAGCAAAGCCAGTGAGT
chr18	65631898	65631899	chr18:65631899:A:G	rs116685555	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr18	65788354	65788355	chr18:65788355:G:A	rs12457175	G	A	G	Sox3.mouse_HMG_2	3	1	-	5.659968681301442	0.8031128060792213	CAACTATTTCAGTGATG
chr18	66254398	66254399	chr18:66254399:C:T	rs11664666	C	T	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr18	66302401	66302402	chr18:66302402:G:C	rs73965519	G	C	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr18	66302426	66302427	chr18:66302427:T:C	rs557690672	T	C	T	Sox3.mouse_HMG_2	11	1	-	3.140682731804189	7.712166860137474	CATCAATGAGAATGAAT
chr18	66596784	66596785	chr18:66596785:A:T	rs9959176	A	T	a	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr18	67770302	67770303	chr18:67770303:C:T	rs73464526	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr18	67788646	67788647	chr18:67788647:T:A	rs10401084	T	A	A	Sox3.mouse_HMG_2	11	1	+	3.330593878194456	-2.621412427552653	CATCAATGGTGTTGTGC
chr18	67788669	67788670	chr18:67788670:A:T	rs115211153	A	T	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr18	67825157	67825158	chr18:67825158:T:C	rs12456077	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr18	67854443	67854444	chr18:67854444:T:G	rs514705	T	G	G	Sox3.mouse_HMG_2	14	1	-	5.89040842822728	-0.14212018936136478	GATGAATGGTATTTATA
chr18	67919506	67919507	chr18:67919507:G:A	rs35331608	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr18	67919514	67919515	chr18:67919515:A:G	rs80200300	A	G	A	Sox3.mouse_HMG_2	2	1	+	2.527569293796677	0.6553514029003222	GGACAGTGGTAGTGGTT
chr18	68035995	68035996	chr18:68035996:T:C	rs8087130	T	C	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr18	68036002	68036003	chr18:68036003:T:G	rs1518022	T	G	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr18	68149107	68149108	chr18:68149108:C:A	rs1589134	C	A	c	Sox3.mouse_HMG_2	4	1	+	4.287184921886315	11.195260149679372	CAACCATTGCATTGAAT
chr18	68206504	68206505	chr18:68206505:A:G	rs614711	A	G	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr18	68234605	68234606	chr18:68234606:T:G	rs58981676	T	G	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr18	68377067	68377068	chr18:68377068:T:C	rs17079006	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr18	68468542	68468543	chr18:68468543:G:A	rs183325235	G	A	G	Sox3.mouse_HMG_2	7	1	+	3.4033706073766608	-3.2254508877113945	CATGAATGTCATTCAAA
chr18	68954810	68954811	chr18:68954811:C:A	rs4450506	C	A	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr18	69484701	69484702	chr18:69484702:C:T	rs7238166	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr18	69485406	69485407	chr18:69485407:G:A	rs17081040	G	A	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr18	69485426	69485427	chr18:69485427:A:G	rs2364204	A	G	G	Sox3.mouse_HMG_2	12	1	-	1.640815945788393	-4.410151192142423	AGGCAATGCCTTTGATG
chr18	69817258	69817259	chr18:69817259:T:C	rs1023744	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr18	69840740	69840741	chr18:69840741:G:A	rs150957964	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr18	69840748	69840749	chr18:69840749:T:C	rs4891779	T	C	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr18	69890039	69890040	chr18:69890040:G:T	rs17802023	G	T	G	Sox3.mouse_HMG_2	3	1	-	8.09634613990957	1.1956759006506639	GATCAACTACAGTGATT
chr18	70256730	70256731	chr18:70256731:C:G	rs12454981	C	G	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr18	70256933	70256934	chr18:70256934:C:G	rs2886594	C	G	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr18	70659013	70659014	chr18:70659014:T:C	rs1510040	T	C	T	Sox3.mouse_HMG_2	2	1	+	9.073411515133701	2.7065142086079557	CATCAATGTGATTGACA
chr18	70672813	70672814	chr18:70672814:C:T	rs556807958	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr18	71045481	71045482	chr18:71045482:A:G	rs12970821	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr18	71524247	71524248	chr18:71524248:A:G	rs959721399	A	G	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr18	71730992	71730993	chr18:71730993:T:C	rs8095170	T	C	T	Sox3.mouse_HMG_2	9	1	+	7.909871625676325	7.217219082804367	TATCATTTTTAGTGATC
chr18	72351787	72351788	chr18:72351788:G:T	rs12961877	G	T	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr18	73283876	73283877	chr18:73283877:A:C	rs79675858	A	C	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr18	73283878	73283879	chr18:73283879:T:C	rs4619489	T	C	C	Sox3.mouse_HMG_2	0	1	+	6.61505879627512	7.100193810529229	TAGCAATTTTATTGCTT
chr18	73406954	73406955	chr18:73406955:T:C	rs4458094	T	C	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr18	73406986	73406987	chr18:73406987:C:T	rs4371252	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr18	74204910	74204911	chr18:74204911:T:C	rs28542813	T	C	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr18	74204927	74204928	chr18:74204928:C:G	rs28395429	C	G	C	Sox3.mouse_HMG_2	7	1	-	2.8850204100342047	-3.743801085053852	CTTCAGTGTCATGGATG
chr18	74249317	74249318	chr18:74249318:A:G	rs180976128	A	G	A	Sox3.mouse_HMG_2	5	1	+	5.520124233237581	-0.8691572011403084	CATCAAAGACAGTGAAA
chr18	74292900	74292901	chr18:74292901:T:G	rs3813106	T	G	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr18	74511174	74511175	chr18:74511175:C:T	rs8088885	C	T	.	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr18	74551902	74551903	chr18:74551903:G:A	rs55813520	G	A	G	Sox3.mouse_HMG_2	13	1	+	5.742644281502606	-0.3089942226837055	GATCAATTGGATCGATT
chr18	74839097	74839098	chr18:74839098:G:A	rs1157491	G	A	G	Sox3.mouse_HMG_2	8	1	+	3.117192764699979	1.898402379955483	TATCTATTGTATTTATA
chr18	75055312	75055313	chr18:75055313:G:T	rs17056226	G	T	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr18	75061478	75061479	chr18:75061479:C:T	rs35544423	C	T	C	Sox3.mouse_HMG_2	16	1	-	1.858432653055434	1.6468582265701832	CCTCAATGTCACTGGCG
chr18	75067690	75067691	chr18:75067691:T:C	rs4491625	T	C	T	Sox3.mouse_HMG_2	1	1	-	3.1546927489757675	1.1483048069563115	TATAAATGGCAGTGGAG
chr18	75113488	75113489	chr18:75113489:A:G	rs55788925	A	G	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr18	75128636	75128637	chr18:75128637:A:G	rs17264285	A	G	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr18	75338787	75338788	chr18:75338788:C:T	rs77895107	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr18	75475550	75475551	chr18:75475551:T:C	rs114311206	T	C	T	Sox3.mouse_HMG_2	8	1	+	5.761555961290203	4.507133995134534	CTTCAAAGTTAGTGAAG
chr18	75539048	75539049	chr18:75539049:G:C	rs62089545	G	C	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr18	75679347	75679348	chr18:75679348:C:T	rs2584469	C	T	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr18	75784590	75784591	chr18:75784591:C:T	rs17058124	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr18	75881564	75881565	chr18:75881565:A:G	rs8087536	A	G	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr18	75987460	75987461	chr18:75987461:G:C	rs885228	G	C	C	Sox3.mouse_HMG_2	16	1	+	2.994888946714682	1.7556175866881771	CAGTAATGACATTGGTG
chr18	76319999	76320000	chr18:76320000:T:G	rs690030	T	G	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr18	76541022	76541023	chr18:76541023:C:T	rs77044162	C	T	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr18	76565050	76565051	chr18:76565051:C:T	rs114389974	C	T	C	Sox3.mouse_HMG_2	7	1	-	6.125277650924149	-0.5035438441639075	CTTCAAGGTTAGTGAAT
chr18	76668685	76668686	chr18:76668686:A:G	rs4891184	A	G	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr18	76671332	76671333	chr18:76671333:A:G	rs6565902	A	G	G	Sox3.mouse_HMG_2	16	1	-	3.960204578739238	2.357211529078787	GGTTAATTTTAGTCATT
chr18	76875501	76875502	chr18:76875502:G:A	rs2276210	G	A	G	Sox3.mouse_HMG_2	0	1	+	4.490382021598879	2.7938897278962167	GTTCAAATGTAGTGAAT
chr18	76894898	76894899	chr18:76894899:A:G	rs552139	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr18	77141970	77141971	chr18:77141971:T:G	rs1667957	T	G	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr18	77168271	77168272	chr18:77168272:T:C	rs1789138	T	C	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr18	77210324	77210325	chr18:77210325:T:C	rs2717106	T	C	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr18	77324137	77324138	chr18:77324138:C:T	rs75220814	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr18	77360513	77360514	chr18:77360514:T:C	rs2717124	T	C	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr18	77796665	77796666	chr18:77796666:A:T	rs8085841	A	T	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr18	78154486	78154487	chr18:78154487:G:C	rs6506766	G	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr18	78242725	78242726	chr18:78242726:A:G	rs117208583	A	G	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr18	78395007	78395008	chr18:78395008:T:A	rs28498422	T	A	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr18	78450025	78450026	chr18:78450026:C:G	rs62094109	C	G	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr18	78454262	78454263	chr18:78454263:G:T	rs8099146	G	T	T	Sox3.mouse_HMG_2	6	1	-	2.4016990848951405	1.8829052914799735	CCTCAACTGCAGTGGTA
chr18	78454440	78454441	chr18:78454441:C:T	rs73493781	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr18	78474973	78474974	chr18:78474974:C:T	rs149239585	C	T	-	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr18	78521337	78521338	chr18:78521338:C:T	rs11081619	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr18	78546457	78546458	chr18:78546458:G:T	rs1866330	G	T	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr18	78561267	78561268	chr18:78561268:T:C	rs9959373	T	C	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr18	78723742	78723743	chr18:78723743:C:T	rs9947422	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr18	78737971	78737972	chr18:78737972:T:C	rs12963574	T	C	C	Sox3.mouse_HMG_2	10	1	-	3.413106030062904	-3.495648749252317	TGTCAATTCCAGTTAAG
chr18	78799486	78799487	chr18:78799487:C:A	rs4799202	C	A	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr18	79170280	79170281	chr18:79170281:A:G	rs530471572	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr18	79361815	79361816	chr18:79361816:C:T	rs7243979	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr18	79361980	79361981	chr18:79361981:G:A	rs191685593	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr18	79388536	79388537	chr18:79388537:G:A	rs62097703	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr18	79403928	79403929	chr18:79403929:G:A	rs8090692	G	A	G	Sox3.mouse_HMG_2	0	1	+	2.895375581441172	1.1988832877385094	GTTCAAGTTCAGTGTTT
chr18	79647874	79647875	chr18:79647875:A:C	rs11081552	A	C	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr18	79919502	79919503	chr18:79919503:G:A	rs12607405	G	A	A	Sox3.mouse_HMG_2	14	1	+	2.3105688319433284	5.62863510171493	GGTCAAGGTCAGTGGGG
chr18	79919518	79919519	chr18:79919519:G:A	rs12607407	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr18	79921900	79921901	chr18:79921901:A:G	rs11665374	A	G	G	Sox3.mouse_HMG_2	5	1	+	4.374388402443909	-2.01489303193398	GGTCAAGGTCAGTGACA
chr18	79987541	79987542	chr18:79987542:T:C	rs7235319	T	C	C	Sox3.mouse_HMG_2	14	1	-	2.5317872402856274	-0.7862790294859742	GATGACTTTTATTGAGG
chr18	80150024	80150025	chr18:80150025:T:C	rs7407145	T	C	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr18	80244355	80244356	chr18:80244356:T:C	rs6506819	T	C	.	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr19	93541	93542	chr19:93542:G:T	rs143501051	G	T	g	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr19	526080	526081	chr19:526081:C:T	rs11878736	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr19	526083	526084	chr19:526084:T:C	rs62132560	T	C	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr19	526109	526110	chr19:526110:G:C	rs73505461	G	C	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr19	580742	580743	chr19:580743:T:C	rs11551904	T	C	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr19	605227	605228	chr19:605228:C:T	rs80135478	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr19	605232	605233	chr19:605233:C:T	rs116723556	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr19	619020	619021	chr19:619021:G:C	rs14155	G	C	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr19	658367	658368	chr19:658368:A:G	rs2040739	A	G	a	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr19	693453	693454	chr19:693454:C:T	rs9807838	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr19	693469	693470	chr19:693470:T:C	rs9807910	T	C	t	Sox3.mouse_HMG_2	5	1	-	1.555738960224047	-4.833542474153842	CCTCCATTTCATAGATG
chr19	782117	782118	chr19:782118:C:A	rs117944849	C	A	C	Sox3.mouse_HMG_2	6	1	+	0.8918681406897241	0.37307434727455696	TGTCAGCGGCAGTGATG
chr19	1080311	1080312	chr19:1080312:G:C	rs2074454	G	C	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr19	1407026	1407027	chr19:1407027:G:A	rs539272773	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr19	1773353	1773354	chr19:1773354:A:G	rs8108510	A	G	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr19	2279190	2279191	chr19:2279191:G:A	rs56054943	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr19	2303220	2303221	chr19:2303221:T:C	rs8103800	T	C	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr19	2380819	2380820	chr19:2380820:G:C	rs4807247	G	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr19	2549916	2549917	chr19:2549917:T:C	rs75484337	T	C	T	Sox3.mouse_HMG_2	0	1	-	1.9838913717424929	3.6803836654451554	ACTCCATTTCATTGTTA
chr19	2569947	2569948	chr19:2569948:T:G	rs10416033	T	G	G	Sox3.mouse_HMG_2	6	1	+	8.134976905576533	1.2269016777834747	GAGCAATGTCAGTGACA
chr19	2703031	2703032	chr19:2703032:A:G	rs113391116	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.708777970548131	0.319496536170242	GAAGAATGTCAGTGATC
chr19	2746892	2746893	chr19:2746893:A:G	rs77522778	A	G	A	Sox3.mouse_HMG_2	8	1	-	3.032940229874252	1.7785182637185804	GCTCAATGTCATTAGAC
chr19	2950833	2950834	chr19:2950834:G:T	rs78161636	G	T	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr19	3003141	3003142	chr19:3003142:C:T	rs77352760	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.27943815010981	-3.772200354076501	GATTAATATTAATGATT
chr19	3047561	3047562	chr19:3047562:C:T	rs55919790	C	T	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr19	3060291	3060292	chr19:3060292:C:T	rs114392649	C	T	-	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr19	3125332	3125333	chr19:3125333:T:C	rs77849071	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr19	3371711	3371712	chr19:3371712:A:G	rs80158771	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr19	3592134	3592135	chr19:3592135:A:G	rs16991953	A	G	A	Sox3.mouse_HMG_2	7	1	-	3.36826092737753	-2.134669353865281	GCTTAATTCTATTGCTG
chr19	3627376	3627377	chr19:3627377:C:A	rs191631766	C	A	C	Sox3.mouse_HMG_2	13	1	-	1.0911417635319807	-5.296118275395232	TATCAAAGTTTTTGTTT
chr19	3627407	3627408	chr19:3627408:A:G	rs11672735	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr19	3701700	3701701	chr19:3701701:T:C	rs28668474	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr19	3849354	3849355	chr19:3849355:T:G	rs377750601	T	G	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr19	3983185	3983186	chr19:3983186:A:G	rs2230560	A	G	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr19	4114311	4114312	chr19:4114312:T:C	rs350895	T	C	C	Sox3.mouse_HMG_2	1	1	+	6.631577486682327	6.611359509391682	GTTCAATTTTAATGAGA
chr19	4145010	4145011	chr19:4145011:G:A	rs693975	G	A	a	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr19	4352375	4352376	chr19:4352376:A:C	rs56828298	A	C	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr19	4695371	4695372	chr19:4695372:G:T	rs57034092	G	T	G	Sox3.mouse_HMG_2	12	1	-	-0.11726385318733364	-0.11726385318733364	GATCAATGTAAGCGGGG
chr19	4737676	4737677	chr19:4737677:C:T	rs1860936	C	T	t	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr19	4795634	4795635	chr19:4795635:G:C	rs8111933	G	C	C	Sox3.mouse_HMG_2	16	1	+	3.9180879273703035	2.6788165673437985	AGTCCATGGCATTGGTG
chr19	4829401	4829402	chr19:4829402:G:A	rs4807654	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr19	4833273	4833274	chr19:4833274:C:T	rs77428119	C	T	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr19	5417822	5417823	chr19:5417823:A:T	rs424836	A	T	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr19	5574483	5574484	chr19:5574484:G:A	rs72977063	G	A	g	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr19	5720371	5720372	chr19:5720372:A:C	rs72979079	A	C	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr19	5720372	5720373	chr19:5720373:G:A	rs189210845	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr19	5720376	5720377	chr19:5720377:C:A	rs144543071	C	A	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr19	5720392	5720393	chr19:5720393:A:G	rs180683901	A	G	A	Sox3.mouse_HMG_2	2	1	+	1.253634205087314	-0.6185836858090387	AAACACTGGTAGTGTTG
chr19	5938183	5938184	chr19:5938184:A:G	chr19:5938184:A:G	A	G	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr19	6630663	6630664	chr19:6630664:C:T	rs12976718	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr19	6633608	6633609	chr19:6633609:T:C	rs669631	T	C	t	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr19	6721628	6721629	chr19:6721629:A:C	rs11569393	A	C	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr19	6751695	6751696	chr19:6751696:G:A	rs12611400	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr19	6991735	6991736	chr19:6991736:C:A	rs8109332	C	A	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr19	7054962	7054963	chr19:7054963:A:G	rs920715532	A	G	-	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr19	7099798	7099799	chr19:7099799:A:G	rs73923711	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.2521980260655927	-3.4321761733947422	TCTCACTGTTATTAATT
chr19	7186562	7186563	chr19:7186563:G:A	rs112819336	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr19	7189084	7189085	chr19:7189085:C:T	rs8103934	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr19	7259416	7259417	chr19:7259417:A:C	rs8109308	A	C	C	Sox3.mouse_HMG_2	16	1	-	3.114749998844206	2.75102830921026	CAACAATCTTATTTATT
chr19	7273142	7273143	chr19:7273143:T:C	rs62109586	T	C	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr19	7292571	7292572	chr19:7292572:T:G	rs8111710	T	G	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr19	7360926	7360927	chr19:7360927:G:A	rs76506685	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr19	7398851	7398852	chr19:7398852:G:A	rs144178389	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr19	7568436	7568437	chr19:7568437:A:G	rs7257297	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr19	7568453	7568454	chr19:7568454:T:C	chr19:7568454:T:C	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.7234281651669923	-3.6658532692108965	TATTAATTTTTTTGAGA
chr19	7629504	7629505	chr19:7629505:G:C	rs146660753	G	C	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr19	7629506	7629507	chr19:7629507:G:A	rs4134809	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr19	7678934	7678935	chr19:7678935:A:G	rs72996468	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.2612288444930657	-3.1280525898848235	TGTCAATGTTTTTTATG
chr19	7693111	7693112	chr19:7693112:C:T	rs140588164	C	T	c	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr19	7693113	7693114	chr19:7693114:G:A	rs17159838	G	A	N	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr19	7693150	7693151	chr19:7693151:T:G	rs144566775	T	G	t	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr19	7738280	7738281	chr19:7738281:A:G	rs7254342	A	G	a	Sox3.mouse_HMG_2	5	1	+	4.199965936910698	-2.1893154974671893	GATGAATGGTGGTGATG
chr19	7738290	7738291	chr19:7738291:T:C	rs7258175	T	C	t	Sox3.mouse_HMG_2	15	1	+	4.199965936910698	0.42016651940490285	GATGAATGGTGGTGATG
chr19	7795877	7795878	chr19:7795878:T:C	rs10401786	T	C	c	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr19	7829754	7829755	chr19:7829755:C:G	rs151063055	C	G	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr19	7829761	7829762	chr19:7829762:T:C	rs530922550	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr19	7934235	7934236	chr19:7934236:G:A	rs55715900	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr19	7943945	7943946	chr19:7943946:G:A	rs571824216	G	A	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr19	8194652	8194653	chr19:8194653:C:T	rs760056806	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr19	8194653	8194654	chr19:8194654:G:A	rs191388672	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr19	8194681	8194682	chr19:8194682:A:G	rs78163053	A	G	A	Sox3.mouse_HMG_2	0	1	-	0.4559730775782002	0.9411080918323088	TATCCGTGTCAGTGAGG
chr19	8487754	8487755	chr19:8487755:T:C	rs7248918	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.2770129426519814	-4.112268491725908	CAGCAATGGTGGTGAAA
chr19	8525729	8525730	chr19:8525730:C:T	rs145378255	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr19	8677304	8677305	chr19:8677305:C:A	rs4804078	C	A	C	Sox3.mouse_HMG_2	10	1	-	4.5310485586993385	4.5310485586993385	TGTCAATTCTGTTGAGG
chr19	8694456	8694457	chr19:8694457:G:A	rs115450201	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr19	8811613	8811614	chr19:8811614:A:G	rs781927784	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr19	8938472	8938473	chr19:8938473:G:A	rs12461007	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr19	9075027	9075028	chr19:9075028:G:A	rs10420883	G	A	A	Sox3.mouse_HMG_2	11	1	-	2.9090529872128017	9.593427186673136	CATCAGTGTCACTGAGT
chr19	9076076	9076077	chr19:9076077:G:A	rs74652972	G	A	G	Sox3.mouse_HMG_2	1	1	+	1.5016050035414465	3.5079929455609027	GGTGAAGGGCAGTGATG
chr19	9171701	9171702	chr19:9171702:G:A	rs7257452	G	A	.	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr19	9190489	9190490	chr19:9190490:T:G	rs13345998	T	G	.	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr19	9321230	9321231	chr19:9321231:T:C	rs2082426	T	C	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr19	9819937	9819938	chr19:9819938:T:C	chr19:9819938:T:C	T	C	T	Sox3.mouse_HMG_2	1	1	+	6.93021463470615	6.909996657415505	TTTCACTTTCATTGATA
chr19	9987254	9987255	chr19:9987255:A:C	rs8101390	A	C	A	Sox3.mouse_HMG_2	7	1	-	3.3427689595848866	4.468660173430133	GCGCAATTTCATTGTAG
chr19	10046542	10046543	chr19:10046543:T:G	rs11883054	T	G	G	Sox3.mouse_HMG_2	15	1	+	0.9649250001822075	-1.7722021445378182	GATCAATTGCATCTGTG
chr19	10197990	10197991	chr19:10197991:C:G	rs150293645	C	G	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr19	10250068	10250069	chr19:10250069:A:T	rs117131708	A	T	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr19	10250071	10250072	chr19:10250072:T:A	rs10415975	T	A	t	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr19	10250099	10250100	chr19:10250100:A:G	rs116774287	A	G	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr19	10378249	10378250	chr19:10378250:C:T	rs55762744	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr19	10378282	10378283	chr19:10378283:G:T	rs147251502	G	T	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr19	10378292	10378293	chr19:10378293:G:T	rs56295652	G	T	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr19	10461116	10461117	chr19:10461117:G:A	rs144860215	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr19	10492329	10492330	chr19:10492330:G:T	chr19:10492330:G:T	G	T	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr19	10755231	10755232	chr19:10755232:C:T	rs141737221	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr19	10836269	10836270	chr19:10836270:C:T	chr19:10836270:C:T	C	T	C	Sox3.mouse_HMG_2	3	1	+	0.10892672146280796	-4.747929153759415	GCTCATTGGCAGTGGCT
chr19	10874685	10874686	chr19:10874686:C:T	rs7256879	C	T	c	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr19	11118288	11118289	chr19:11118289:C:A	rs2738450	C	A	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr19	11193821	11193822	chr19:11193822:C:T	rs755238	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr19	11273530	11273531	chr19:11273531:C:G	rs1869772	C	G	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr19	11769001	11769002	chr19:11769002:T:G	rs451036	T	G	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr19	11923612	11923613	chr19:11923613:T:G	rs569570449	T	G	T	Sox3.mouse_HMG_2	16	1	+	0.7016566881541797	0.33793499852023395	CTGCAGTGTCATTGACT
chr19	11923855	11923856	chr19:11923856:G:C	chr19:11923856:G:C	G	C	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr19	12384207	12384208	chr19:12384208:C:A	rs8105975	C	A	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr19	12563939	12563940	chr19:12563940:T:A	rs117961214	T	A	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr19	12563940	12563941	chr19:12563941:C:A	rs79337745	C	A	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr19	12610732	12610733	chr19:12610733:G:T	rs535255350	G	T	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr19	12610736	12610737	chr19:12610737:C:T	chr19:12610737:C:T	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr19	12610754	12610755	chr19:12610755:A:C	rs188742005	A	C	A	Sox3.mouse_HMG_2	12	1	-	2.9136817991068957	-3.4729068735648196	GGACAATTGTGTTGAAG
chr19	12630709	12630710	chr19:12630710:T:A	rs118082271	T	A	t	Sox3.mouse_HMG_2	12	1	+	10.33643480727889	4.285467669348071	AGACAATGATATTGATG
chr19	12651968	12651969	chr19:12651969:T:C	rs17476839	T	C	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr19	12681562	12681563	chr19:12681563:G:A	rs11541391	G	A	G	Sox3.mouse_HMG_2	7	1	+	0.7360898610864011	-5.892731634001658	TCACCATGGCATTGACT
chr19	12681575	12681576	chr19:12681576:T:C	rs34610671	T	C	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr19	12973152	12973153	chr19:12973153:C:T	rs7248481	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr19	13156367	13156368	chr19:13156368:G:A	rs151115955	G	A	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr19	13156370	13156371	chr19:13156371:G:T	rs892020	G	T	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr19	13277321	13277322	chr19:13277322:T:C	rs77790205	T	C	T	Sox3.mouse_HMG_2	16	1	-	1.868177779094797	2.0797522055800477	GGACAATTTCATTCACA
chr19	13277334	13277335	chr19:13277335:G:T	rs570735131	G	T	G	Sox3.mouse_HMG_2	3	1	-	1.868177779094797	-5.032492460164109	GGACAATTTCATTCACA
chr19	13640912	13640913	chr19:13640913:A:G	rs115267620	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr19	13825015	13825016	chr19:13825016:C:T	rs79438755	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr19	13900119	13900120	chr19:13900120:A:G	rs7507907	A	G	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr19	13913455	13913456	chr19:13913456:C:T	rs61740117	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr19	14004905	14004906	chr19:14004906:T:C	rs10401504	T	C	T	Sox3.mouse_HMG_2	16	1	-	0.41757784902757794	0.6291522755128286	TATCCATGTTTGTGAGA
chr19	14030667	14030668	chr19:14030668:A:G	rs4263049	A	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr19	14035778	14035779	chr19:14035779:G:A	rs8108000	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr19	14382489	14382490	chr19:14382490:G:A	rs62122578	G	A	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr19	14912155	14912156	chr19:14912156:T:A	rs1015903	T	A	-	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr19	15116218	15116219	chr19:15116219:G:A	rs2074263	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr19	15184322	15184323	chr19:15184323:G:A	rs1043996	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr19	15284299	15284300	chr19:15284300:A:C	rs62113845	A	C	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr19	15686598	15686599	chr19:15686599:T:A	rs645827	T	A	A	Sox3.mouse_HMG_2	9	1	+	3.6647753708163915	-2.319205889067928	TAACTATGGTAGTGAAA
chr19	15997391	15997392	chr19:15997392:A:G	rs10422944	A	G	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr19	16005714	16005715	chr19:16005715:G:T	rs10401940	G	T	G	Sox3.mouse_HMG_2	15	1	-	3.069139569718394	4.545549293765505	GAGAAATGGTATTGACT
chr19	16041885	16041886	chr19:16041886:C:T	rs75847529	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr19	16061928	16061929	chr19:16061929:T:C	rs17641704	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr19	16077744	16077745	chr19:16077745:A:G	rs4808032	A	G	G	Sox3.mouse_HMG_2	0	1	+	4.789242392917267	6.485734686619931	AATCAATTGTGTTGTTG
chr19	16077745	16077746	chr19:16077746:A:C	rs4808451	A	C	C	Sox3.mouse_HMG_2	1	1	+	4.789242392917267	2.0738008565733277	AATCAATTGTGTTGTTG
chr19	16145679	16145680	chr19:16145680:C:T	rs74472255	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr19	16238439	16238440	chr19:16238440:T:C	rs8100939	T	C	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr19	16238474	16238475	chr19:16238475:A:G	rs35542939	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr19	16384962	16384963	chr19:16384963:A:C	rs2290669	A	C	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr19	16445410	16445411	chr19:16445411:G:C	rs79083128	G	C	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr19	16496686	16496687	chr19:16496687:G:A	rs7246005	G	A	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr19	16778914	16778915	chr19:16778915:T:C	rs80269479	T	C	.	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr19	16778915	16778916	chr19:16778916:G:A	rs76186997	G	A	.	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr19	17088615	17088616	chr19:17088616:G:A	rs6512165	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr19	17309355	17309356	chr19:17309356:T:C	rs11086068	T	C	T	Sox3.mouse_HMG_2	8	1	+	1.4527641559460562	0.19834218979038626	TCTCACTTTCATTGCTT
chr19	17309363	17309364	chr19:17309364:T:G	rs561198785	T	G	T	Sox3.mouse_HMG_2	16	1	+	1.4527641559460562	1.0890424663121105	TCTCACTTTCATTGCTT
chr19	17448858	17448859	chr19:17448859:C:T	rs568804626	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr19	17590170	17590171	chr19:17590171:T:C	rs10422926	T	C	C	Sox3.mouse_HMG_2	0	1	+	2.2038590575810093	2.688994071835118	TTTCAATGCTATGTATT
chr19	17590201	17590202	chr19:17590202:T:C	rs58204763	T	C	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr19	17636513	17636514	chr19:17636514:A:G	rs76245072	A	G	A	Sox3.mouse_HMG_2	11	1	-	7.55965110986314	0.875276910402804	GTTCAGTTCCATTGATT
chr19	18264224	18264225	chr19:18264225:A:G	rs35768432	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr19	18389911	18389912	chr19:18389912:G:A	rs16982345	G	A	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr19	18460171	18460172	chr19:18460172:C:G	rs148501338	C	G	C	Sox3.mouse_HMG_2	11	1	-	1.2708196626830228	-4.033032359363488	GAGGAATGGCAGTGACA
chr19	18773027	18773028	chr19:18773028:T:C	rs79387512	T	C	T	Sox3.mouse_HMG_2	2	1	-	0.9894689872739226	-0.8827489036224323	CAACCATTCCAGTGACT
chr19	19032557	19032558	chr19:19032558:A:G	chr19:19032558:A:G	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr19	19032579	19032580	chr19:19032580:C:A	rs192291761	C	A	C	Sox3.mouse_HMG_2	0	1	-	6.103104226677285	5.3133356948989885	GTTCATTGTCATTGGTT
chr19	19032597	19032598	chr19:19032598:G:A	rs58514603	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr19	19158064	19158065	chr19:19158065:G:A	rs11878301	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr19	19623729	19623730	chr19:19623730:C:T	rs1054685	C	T	C	Sox3.mouse_HMG_2	12	1	+	1.867069327532412	7.918036465463228	CTTCAATTCTATCGGGG
chr19	19959546	19959547	chr19:19959547:A:G	rs529854852	A	G	a	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr19	19997873	19997874	chr19:19997874:G:C	rs796590171	G	C	c	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr19	20130120	20130121	chr19:20130121:T:A	rs6511081	T	A	.	Sox3.mouse_HMG_2	8	1	+	5.378288935909661	3.345860618160952	CCCCAATGTCAGTGAAA
chr19	20318843	20318844	chr19:20318844:A:C	rs12610232	A	C	.	Sox3.mouse_HMG_2	2	1	-	8.206987308101356	3.053112641421463	GATCAATGCCACTGAAA
chr19	20423249	20423250	chr19:20423250:T:C	rs7248291	T	C	.	Sox3.mouse_HMG_2	0	1	+	2.656202147388925	3.141337161643033	TTTCCATGTCAGTGTTA
chr19	20554311	20554312	chr19:20554312:C:T	rs12609067	C	T	.	Sox3.mouse_HMG_2	16	1	+	1.3113518361163758	2.914344885776827	TGTCAATGTTTTTGGCC
chr19	20570396	20570397	chr19:20570397:G:T	rs35615936	G	T	.	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr19	20570434	20570435	chr19:20570435:A:G	rs66466154	A	G	.	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr19	20867122	20867123	chr19:20867123:C:T	rs59954926	C	T	c	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr19	20970176	20970177	chr19:20970177:C:T	rs13345292	C	T	C	Sox3.mouse_HMG_2	1	1	-	3.040762979968379	5.0471509219878365	AGTCAATGCCTGTGAGT
chr19	21130119	21130120	chr19:21130120:A:G	rs2195454	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr19	21908957	21908958	chr19:21908958:A:G	rs112406249	A	G	a	Sox3.mouse_HMG_2	5	1	+	0.4051285747012749	-5.984152859676613	CCTCAATTGCTTTTATG
chr19	22053592	22053593	chr19:22053593:C:A	rs6511314	C	A	.	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr19	23087105	23087106	chr19:23087106:A:T	rs2963070	A	T	-	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr19	23241589	23241590	chr19:23241590:C:A	rs755188200	C	A	-	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr19	23247429	23247430	chr19:23247430:T:C	rs10410902	T	C	-	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr19	23564604	23564605	chr19:23564605:A:C	rs796847937	A	C	A	Sox3.mouse_HMG_2	10	1	+	0.21354538589065042	-6.69520939342457	CATCTAGGTTATTGACC
chr19	23597960	23597961	chr19:23597961:C:T	rs35810115	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr19	24141663	24141664	chr19:24141664:G:A	rs59756985	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr19	24372136	24372137	chr19:24372137:C:T	rs2124632	C	T	.	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr19	24907170	24907171	chr19:24907171:C:A	rs1416127666	C	A	.	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr19	27829126	27829127	chr19:27829127:G:A	rs6510353	G	A	a	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr19	27894359	27894360	chr19:27894360:A:C	rs17620424	A	C	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr19	27894592	27894593	chr19:27894593:G:A	rs717661	G	A	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr19	28104063	28104064	chr19:28104064:G:C	rs10420017	G	C	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr19	28227463	28227464	chr19:28227464:G:A	rs118045192	G	A	G	Sox3.mouse_HMG_2	2	1	+	3.75823639206509	5.630454282961445	ATGCAATGTCAGTGAGC
chr19	28227752	28227753	chr19:28227753:A:G	rs8105259	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr19	28257744	28257745	chr19:28257745:A:T	rs12973469	A	T	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr19	28396505	28396506	chr19:28396506:C:T	rs6508821	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr19	28467082	28467083	chr19:28467083:C:T	rs2190830	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr19	28467411	28467412	chr19:28467412:G:A	rs58161486	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr19	28474178	28474179	chr19:28474179:T:C	rs117318405	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.217710259122545	-2.1715711752553446	TTTCAATATCAGTGAGA
chr19	28632044	28632045	chr19:28632045:T:C	rs10406093	T	C	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr19	28737107	28737108	chr19:28737108:A:G	rs113166443	A	G	.	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr19	28737148	28737149	chr19:28737149:G:A	rs10406794	G	A	.	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr19	28838743	28838744	chr19:28838744:A:G	rs6509071	A	G	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr19	29043436	29043437	chr19:29043437:G:A	rs8110706	G	A	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr19	29069421	29069422	chr19:29069422:C:A	rs10406201	C	A	A	Sox3.mouse_HMG_2	14	1	-	1.8234467999573343	1.1221315459802903	TGTCAATGACATTTGAG
chr19	29185866	29185867	chr19:29185867:C:A	rs10518258	C	A	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr19	29285501	29285502	chr19:29285502:T:C	rs6509333	T	C	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr19	29329692	29329693	chr19:29329693:G:A	rs73540006	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr19	29329704	29329705	chr19:29329705:C:T	rs57265693	C	T	C	Sox3.mouse_HMG_2	9	1	+	0.4769350869036619	1.1695876297756211	GGTTAGTGGCAGTGAGG
chr19	29393921	29393922	chr19:29393922:G:C	rs554253061	G	C	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr19	29402377	29402378	chr19:29402378:A:G	rs7248795	A	G	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr19	29495159	29495160	chr19:29495160:A:G	rs78312071	A	G	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr19	29595612	29595613	chr19:29595613:A:G	rs68020177	A	G	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr19	29605738	29605739	chr19:29605739:C:A	rs944855423	C	A	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr19	29625221	29625222	chr19:29625222:G:A	rs79583940	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr19	29670329	29670330	chr19:29670330:T:C	rs34898400	T	C	T	Sox3.mouse_HMG_2	16	1	-	1.6271124428868993	1.83868686937215	GATCAAATTCATAGAGA
chr19	29857218	29857219	chr19:29857219:G:C	rs4805490	G	C	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr19	30165244	30165245	chr19:30165245:C:T	rs150851615	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr19	30230059	30230060	chr19:30230060:T:C	rs73021604	T	C	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr19	30374980	30374981	chr19:30374981:C:T	rs113263191	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr19	30418596	30418597	chr19:30418597:G:A	rs10406549	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr19	30443477	30443478	chr19:30443478:G:C	rs10411126	G	C	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr19	30601965	30601966	chr19:30601966:C:T	rs8099868	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr19	30726406	30726407	chr19:30726407:A:T	rs4805605	A	T	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr19	30785339	30785340	chr19:30785340:A:C	rs60939907	A	C	A	Sox3.mouse_HMG_2	12	1	-	0.8991147147106296	-5.487473957961085	CATCTATTGGATTGGTG
chr19	30801910	30801911	chr19:30801911:T:C	rs7343067	T	C	C	Sox3.mouse_HMG_2	4	1	-	2.3423947501995657	-4.046886684178325	CATCAATGAGAGTGGCA
chr19	30865085	30865086	chr19:30865086:G:A	rs117629373	G	A	A	Sox3.mouse_HMG_2	16	1	+	4.895178925723793	4.683604499238543	AATCAATGTCCGTGACG
chr19	30884677	30884678	chr19:30884678:G:A	rs12975535	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr19	30887504	30887505	chr19:30887505:G:A	rs6510185	G	A	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr19	31268182	31268183	chr19:31268183:G:A	rs6510196	G	A	A	Sox3.mouse_HMG_2	8	1	+	3.5890560788546315	2.3702656941101345	CCTCAATGGCCGTGAGA
chr19	31273944	31273945	chr19:31273945:C:T	rs10423964	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr19	31388648	31388649	chr19:31388649:G:A	rs62102630	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr19	31388661	31388662	chr19:31388662:C:T	rs2645153	C	T	C	Sox3.mouse_HMG_2	8	1	-	2.3672831108849803	1.1484927261404827	GAATCATTGTATTGATG
chr19	31838388	31838389	chr19:31838389:C:A	rs146264252	C	A	C	Sox3.mouse_HMG_2	1	1	+	8.941821712958793	11.657263249302735	ACACAATTTTAGTGATA
chr19	31907049	31907050	chr19:31907050:T:G	chr19:31907050:T:G	T	G	T	Sox3.mouse_HMG_2	15	1	+	1.130945328017476	-1.6061818167025497	ATTCAATGGCAGGGGTC
chr19	31943516	31943517	chr19:31943517:A:G	rs527495746	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr19	32012166	32012167	chr19:32012167:C:T	rs7245678	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr19	32104487	32104488	chr19:32104488:A:G	chr19:32104488:A:G	A	G	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr19	32237602	32237603	chr19:32237603:T:G	chr19:32237603:T:G	T	G	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr19	32250960	32250961	chr19:32250961:A:G	rs28629938	A	G	G	Sox3.mouse_HMG_2	12	1	+	-0.5651809376529225	-0.9008024723938218	GCTCAATGGCCTAGAGG
chr19	32408167	32408168	chr19:32408168:G:A	rs741441	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr19	32605409	32605410	chr19:32605410:C:T	rs8113165	C	T	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr19	32774106	32774107	chr19:32774107:A:G	rs58026555	A	G	A	Sox3.mouse_HMG_2	5	1	+	-0.3083194683102904	-6.697600902688177	GATACATGTCAGTGACG
chr19	32819540	32819541	chr19:32819541:T:C	rs2868191	T	C	T	Sox3.mouse_HMG_2	10	1	-	1.9879017241557726	-4.920853055159448	GCTCAAAGTCAGTGCTT
chr19	32877159	32877160	chr19:32877160:C:T	rs34035782	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr19	32911794	32911795	chr19:32911795:G:A	rs12609689	G	A	G	Sox3.mouse_HMG_2	7	1	+	2.3037315289359093	-4.325089966152148	CACCAATGCTATGGAGG
chr19	32944858	32944859	chr19:32944859:A:G	rs7251236	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr19	33197233	33197234	chr19:33197234:C:T	rs12975090	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr19	33252091	33252092	chr19:33252092:T:G	rs78476878	T	G	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr19	33366063	33366064	chr19:33366064:G:T	rs6510376	G	T	T	Sox3.mouse_HMG_2	15	1	-	1.001570983112792	2.4779807071599027	GACCAATTTCATGGACG
chr19	33366073	33366074	chr19:33366074:T:C	rs11878996	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.001570983112792	-5.3877104512650975	GACCAATTTCATGGACG
chr19	33366491	33366492	chr19:33366492:T:G	rs4805874	T	G	G	Sox3.mouse_HMG_2	12	1	+	6.123151838759701	-0.2634368339120146	TATCAATTATTTTGAGT
chr19	33397177	33397178	chr19:33397178:G:A	rs117490768	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr19	33412981	33412982	chr19:33412982:G:C	rs11668968	G	C	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr19	33412990	33412991	chr19:33412991:C:A	rs11669220	C	A	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr19	33472859	33472860	chr19:33472860:C:T	rs10408013	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr19	33478084	33478085	chr19:33478085:T:A	rs61748998	T	A	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr19	33483947	33483948	chr19:33483948:A:G	rs17834084	A	G	A	Sox3.mouse_HMG_2	5	1	+	1.9481659695040177	-4.441115464873873	CGTTAATGGTGTTGAAA
chr19	33498228	33498229	chr19:33498229:G:C	rs3786918	G	C	G	Sox3.mouse_HMG_2	13	1	+	1.2149900527084856	-5.172269986218727	CTGCAATGGCAGTGGCG
chr19	33578869	33578870	chr19:33578870:G:A	rs62102169	G	A	G	Sox3.mouse_HMG_2	7	1	+	4.133205477247208	-2.495616017840848	CAGCAATGGCAATGAAG
chr19	33660872	33660873	chr19:33660873:C:G	rs62103460	C	G	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr19	33705291	33705292	chr19:33705292:G:A	rs144665404	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr19	33816096	33816097	chr19:33816097:G:A	rs40815	G	A	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr19	33816125	33816126	chr19:33816126:C:A	rs62101384	C	A	C	Sox3.mouse_HMG_2	3	1	-	5.483021978260885	6.676685412927959	TTTGAATGTTAGTGGTT
chr19	33831231	33831232	chr19:33831232:A:G	rs11084753	A	G	G	Sox3.mouse_HMG_2	12	1	-	2.4476650579292087	-3.6033020800016073	ACACAATGTTTTTGAAG
chr19	33885112	33885113	chr19:33885113:G:A	rs2017094	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr19	34144907	34144908	chr19:34144908:C:G	rs12610541	C	G	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr19	34181161	34181162	chr19:34181162:C:G	rs117558454	C	G	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr19	34181161	34181162	chr19:34181162:C:T	chr19:34181162:C:T	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr19	34254159	34254160	chr19:34254160:T:C	rs185583631	T	C	T	Sox3.mouse_HMG_2	0	1	+	6.069161975113025	6.554296989367132	TGACAATGGTATTGTGT
chr19	34254179	34254180	chr19:34254180:T:C	chr19:34254180:T:C	T	C	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr19	34365969	34365970	chr19:34365970:C:T	rs8191362	C	T	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr19	34371240	34371241	chr19:34371241:C:G	rs529308707	C	G	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr19	34475784	34475785	chr19:34475785:A:C	rs10405504	A	C	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr19	34592762	34592763	chr19:34592763:T:A	rs73038274	T	A	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr19	34801093	34801094	chr19:34801094:T:C	rs1270290	T	C	T	Sox3.mouse_HMG_2	12	1	+	1.4350350688565539	-4.615932069074262	TATCACAGTCAGTGATC
chr19	34963310	34963311	chr19:34963311:G:T	rs2546027	G	T	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr19	35164691	35164692	chr19:35164692:C:T	rs78794409	C	T	N	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr19	35176288	35176289	chr19:35176289:G:A	rs7255878	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr19	35182167	35182168	chr19:35182168:G:A	rs10423916	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr19	35211475	35211476	chr19:35211476:T:A	rs183468775	T	A	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr19	35383541	35383542	chr19:35383542:A:G	rs9916954	A	G	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr19	35392104	35392105	chr19:35392105:G:A	rs75481361	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr19	35483299	35483300	chr19:35483300:G:A	rs8111522	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr19	35556471	35556472	chr19:35556472:T:C	rs11084823	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr19	36093878	36093879	chr19:36093879:G:A	rs17639414	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr19	36169544	36169545	chr19:36169545:A:G	rs1476503	A	G	g	Sox3.mouse_HMG_2	15	1	-	2.3251386263622407	-1.4546607911435554	CTTCATTGTTTTTGATA
chr19	36169551	36169552	chr19:36169552:A:G	rs1476504	A	G	g	Sox3.mouse_HMG_2	8	1	-	2.3251386263622407	1.0707166602065714	CTTCATTGTTTTTGATA
chr19	36577449	36577450	chr19:36577450:A:T	rs914922698	A	T	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr19	37057113	37057114	chr19:37057114:C:T	rs10414227	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr19	38114795	38114796	chr19:38114796:A:G	rs3852911	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr19	38214431	38214432	chr19:38214432:A:C	chr19:38214432:A:C	A	C	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr19	38230115	38230116	chr19:38230116:G:C	rs143944138	G	C	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr19	38250284	38250285	chr19:38250285:C:T	rs12981216	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr19	38692873	38692874	chr19:38692874:C:T	rs117851231	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr19	38700682	38700683	chr19:38700683:C:T	rs77307137	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr19	38805678	38805679	chr19:38805679:T:G	rs4802887	T	G	G	Sox3.mouse_HMG_2	0	1	+	0.7347772820336008	1.5245458138118975	TATCCCTTGCAGTGATG
chr19	38841203	38841204	chr19:38841204:C:T	rs77232760	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr19	39017892	39017893	chr19:39017893:T:C	rs76758260	T	C	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr19	39104416	39104417	chr19:39104417:C:T	rs149772106	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr19	39131191	39131192	chr19:39131192:G:T	rs185548609	G	T	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr19	39244093	39244094	chr19:39244094:T:C	rs148543092	T	C	C	Sox3.mouse_HMG_2	15	1	+	-0.48447736785229517	-4.264276785358091	GGTCAGTGTCAGCGGTG
chr19	39269550	39269551	chr19:39269551:A:G	rs8103362	A	G	N	Sox3.mouse_HMG_2	15	1	-	-0.48447736785229517	-4.264276785358091	GGTCAGTGTCAGCGGTG
chr19	39378899	39378900	chr19:39378900:C:G	rs16973374	C	G	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr19	39581937	39581938	chr19:39581938:C:G	rs115245869	C	G	-	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr19	39660325	39660326	chr19:39660326:A:T	chr19:39660326:A:T	A	T	-	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr19	39728921	39728922	chr19:39728922:T:G	rs439881	T	G	-	Sox3.mouse_HMG_2	15	1	+	2.8886186750357754	0.15149153031574975	CAGAAATGACAGTGATG
chr19	39731967	39731968	chr19:39731968:C:T	rs75339357	C	T	-	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr19	39810712	39810713	chr19:39810713:A:G	rs79795592	A	G	A	Sox3.mouse_HMG_2	4	1	+	4.497810064348883	-1.891471370029007	ATTCAACTTTATTGAGA
chr19	39913650	39913651	chr19:39913651:A:G	rs12459958	A	G	.	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr19	40137094	40137095	chr19:40137095:A:C	rs73551655	A	C	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr19	40598953	40598954	chr19:40598954:G:T	rs1864074	G	T	T	Sox3.mouse_HMG_2	3	1	-	3.346383033529351	-3.5542872057295565	GTACGATTTTATTGAAA
chr19	40726306	40726307	chr19:40726307:C:G	rs141182844	C	G	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr19	40888196	40888197	chr19:40888197:A:G	rs117683060	A	G	A	Sox3.mouse_HMG_2	8	1	-	4.466519080798165	3.2120971146424955	TTTTAATGTTTTTGATT
chr19	41753247	41753248	chr19:41753248:G:A	rs11878239	G	A	N	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr19	41870765	41870766	chr19:41870766:G:T	rs2075752	G	T	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr19	42075410	42075411	chr19:42075411:C:T	rs1299062568	C	T	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr19	42075421	42075422	chr19:42075422:C:G	rs143455202	C	G	C	Sox3.mouse_HMG_2	14	1	-	6.413781272297519	3.699318924480475	GGACAATTTCATTGGAA
chr19	42121400	42121401	chr19:42121401:T:C	rs115051406	T	C	T	Sox3.mouse_HMG_2	9	1	+	1.9663106193397781	1.2736580764678194	GACCAATGATACTGAAG
chr19	42466025	42466026	chr19:42466026:G:A	rs933012622	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr19	42515710	42515711	chr19:42515711:G:T	rs10404589	G	T	t	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr19	42923473	42923474	chr19:42923474:A:G	rs10409077	A	G	.	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr19	42993421	42993422	chr19:42993422:G:A	rs8103079	G	A	.	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr19	43264029	43264030	chr19:43264030:C:T	rs7247607	C	T	.	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr19	43674477	43674478	chr19:43674478:G:C	rs344775	G	C	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr19	43674496	43674497	chr19:43674497:A:G	rs344774	A	G	G	Sox3.mouse_HMG_2	6	1	-	0.9914344606845584	-5.397846973693331	GAAGAATGTCATTGGCC
chr19	43789125	43789126	chr19:43789126:T:C	rs8104447	T	C	T	Sox3.mouse_HMG_2	12	1	+	7.729799633785662	1.6788324958548457	GTTCAATGATACTGATA
chr19	43804849	43804850	chr19:43804850:C:T	rs364691	C	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr19	43813207	43813208	chr19:43813208:C:T	rs349032	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr19	44002859	44002860	chr19:44002860:C:G	chr19:44002860:C:G	C	G	C	Sox3.mouse_HMG_2	6	1	+	2.514684751417517	1.9958909580023498	CATCAACTTCATGGAAT
chr19	44002881	44002882	chr19:44002882:T:G	rs75689988	T	G	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr19	44002885	44002886	chr19:44002886:T:C	rs974990444	T	C	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr19	44346400	44346401	chr19:44346401:G:A	rs2356881	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr19	44570926	44570927	chr19:44570927:T:G	rs150028856	T	G	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr19	44570930	44570931	chr19:44570931:T:G	rs846848	T	G	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr19	44774328	44774329	chr19:44774329:G:A	rs57816145	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr19	44850786	44850787	chr19:44850787:T:G	rs57537848	T	G	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr19	44951708	44951709	chr19:44951709:T:C	chr19:44951709:T:C	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr19	44951745	44951746	chr19:44951746:G:A	rs568036514	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr19	44953683	44953684	chr19:44953684:G:A	rs3760625	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr19	45443140	45443141	chr19:45443141:C:T	rs4803823	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr19	45443145	45443146	chr19:45443146:C:T	chr19:45443146:C:T	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr19	45518255	45518256	chr19:45518256:C:T	rs2239378	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr19	45543796	45543797	chr19:45543797:T:G	rs73942917	T	G	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr19	45635493	45635494	chr19:45635494:A:G	rs773670764	A	G	A	Sox3.mouse_HMG_2	10	1	+	2.3333516828449765	-4.575403096470245	CAACAAGGTCATTGGAA
chr19	45667678	45667679	chr19:45667679:C:T	rs73573246	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr19	45785800	45785801	chr19:45785801:G:A	rs61744166	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr19	45809846	45809847	chr19:45809847:C:T	rs16980027	C	T	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr19	45877844	45877845	chr19:45877845:G:A	rs112120887	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr19	45886344	45886345	chr19:45886345:T:G	rs56821477	T	G	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr19	45960878	45960879	chr19:45960879:A:G	rs57398989	A	G	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr19	45999535	45999536	chr19:45999536:T:C	rs17652418	T	C	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr19	46101676	46101677	chr19:46101677:G:A	rs117922556	G	A	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr19	46126347	46126348	chr19:46126348:A:G	rs761970974	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr19	46133842	46133843	chr19:46133843:T:C	rs11666311	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr19	46473819	46473820	chr19:46473820:C:T	rs189464510	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr19	46661454	46661455	chr19:46661455:G:A	rs150695561	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr19	46661462	46661463	chr19:46661463:G:C	rs182541418	G	C	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr19	47048742	47048743	chr19:47048743:C:G	rs185998124	C	G	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr19	47137961	47137962	chr19:47137962:C:T	rs928973122	C	T	C	Sox3.mouse_HMG_2	8	1	-	0.40416517987256934	-0.8146252048719277	GATCACTTGAAGTGAGG
chr19	47182513	47182514	chr19:47182514:C:T	rs28375607	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr19	47226850	47226851	chr19:47226851:C:A	chr19:47226851:C:A	C	A	c	Sox3.mouse_HMG_2	1	1	+	4.425143137430823	7.140584673774765	CCTCATTTCTAGTGATC
chr19	47233047	47233048	chr19:47233048:A:G	rs79188018	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr19	47233071	47233072	chr19:47233072:C:T	rs28460069	C	T	C	Sox3.mouse_HMG_2	0	1	-	5.080821471442053	3.384329177739389	GATCCATGTAAGTGATG
chr19	47484571	47484572	chr19:47484572:G:C	rs8105089	G	C	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr19	47600398	47600399	chr19:47600399:T:C	chr19:47600399:T:C	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr19	47723324	47723325	chr19:47723325:A:T	rs3112493	A	T	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr19	47728988	47728989	chr19:47728989:C:T	rs11672818	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr19	47788904	47788905	chr19:47788905:C:T	rs187738844	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr19	47858816	47858817	chr19:47858817:G:T	rs55636705	G	T	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr19	47900918	47900919	chr19:47900919:C:T	rs1017993	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr19	48011010	48011011	chr19:48011011:C:T	rs62129070	C	T	t	Sox3.mouse_HMG_2	9	1	+	4.501261236510129	5.193913779382089	CAATAATGACAGTGAAG
chr19	48091689	48091690	chr19:48091690:G:A	rs1654383	G	A	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr19	48137549	48137550	chr19:48137550:C:T	rs4987068	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr19	48204456	48204457	chr19:48204457:A:T	rs2015211	A	T	t	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr19	48256107	48256108	chr19:48256108:A:T	rs10424564	A	T	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr19	48260491	48260492	chr19:48260492:T:C	rs4802451	T	C	T	Sox3.mouse_HMG_2	15	1	+	5.865281478149859	2.0854820606440634	GATTAATGATATTCATA
chr19	48290916	48290917	chr19:48290917:G:C	rs6509374	G	C	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr19	48290944	48290945	chr19:48290945:C:T	rs12462913	C	T	C	Sox3.mouse_HMG_2	7	1	-	4.070115025534227	-2.558706469553828	GTAAAATGGTAGTGATA
chr19	48330309	48330310	chr19:48330310:T:G	chr19:48330310:T:G	T	G	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr19	48330350	48330351	chr19:48330351:A:G	rs4893	A	G	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr19	48403453	48403454	chr19:48403454:G:A	rs76754767	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr19	48510844	48510845	chr19:48510845:C:T	rs57339031	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr19	48510858	48510859	chr19:48510859:C:T	rs62130276	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr19	48571705	48571706	chr19:48571706:G:T	rs2379089	G	T	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr19	48589643	48589644	chr19:48589644:A:G	rs73944836	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.3325774006541744	-3.0567040337237135	AGTCAATTACAATGAAA
chr19	48703159	48703160	chr19:48703160:A:G	rs492602	A	G	G	Sox3.mouse_HMG_2	7	1	-	0.20058661044707238	-5.3023436707957385	GGCCTATTGCATTGATC
chr19	48703727	48703728	chr19:48703728:G:A	rs602662	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr19	49021036	49021037	chr19:49021037:C:G	rs143151537	C	G	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr19	49589013	49589014	chr19:49589014:T:C	rs572892866	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr19	49678471	49678472	chr19:49678472:G:C	rs117146366	G	C	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr19	49874885	49874886	chr19:49874886:T:C	rs11083985	T	C	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr19	49908137	49908138	chr19:49908138:C:G	rs11547267	C	G	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr19	50136345	50136346	chr19:50136346:T:G	rs56215721	T	G	-	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr19	50169102	50169103	chr19:50169103:C:G	rs111494123	C	G	c	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr19	50238312	50238313	chr19:50238313:G:A	rs584975	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr19	50561219	50561220	chr19:50561220:G:A	rs146788583	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr19	50596087	50596088	chr19:50596088:C:T	rs184528780	C	T	c	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr19	50831098	50831099	chr19:50831099:T:C	rs2560935	T	C	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr19	50932479	50932480	chr19:50932480:C:T	rs1701906	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr19	51096642	51096643	chr19:51096643:A:T	rs2569502	A	T	A	Sox3.mouse_HMG_2	7	1	-	6.10516957815664	0.6022392969138282	GATCAATTGTATAGGAT
chr19	51155573	51155574	chr19:51155574:G:A	rs273664	G	A	G	Sox3.mouse_HMG_2	4	1	+	1.926787655763278	8.316069090141168	TCACGATGCCATTGAAG
chr19	51192941	51192942	chr19:51192942:T:C	rs7255602	T	C	-	Sox3.mouse_HMG_2	5	1	-	-0.0036060099728002087	-6.392887444350689	GCTCAATGCTGGTGGCG
chr19	51364857	51364858	chr19:51364858:A:T	rs11084074	A	T	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr19	51659802	51659803	chr19:51659803:A:G	rs7248908	A	G	G	Sox3.mouse_HMG_2	9	1	-	1.495091058701266	0.8024385158293067	GGTGAATGGTACTGAAG
chr19	51798406	51798407	chr19:51798407:A:G	rs2902888	A	G	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr19	52474059	52474060	chr19:52474060:T:A	rs1617840	T	A	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr19	52957607	52957608	chr19:52957608:G:A	rs11084211	G	A	N	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr19	53019194	53019195	chr19:53019195:A:G	rs1560097	A	G	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr19	53133352	53133353	chr19:53133353:T:C	rs28370368	T	C	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr19	53223721	53223722	chr19:53223722:C:T	rs10425196	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr19	53264316	53264317	chr19:53264317:C:T	rs2965265	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr19	53467326	53467327	chr19:53467327:A:G	rs4599028	A	G	N	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr19	53467380	53467381	chr19:53467381:C:T	rs534603088	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr19	53569502	53569503	chr19:53569503:C:T	rs3746304	C	T	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr19	53569527	53569528	chr19:53569528:T:C	rs3746303	T	C	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr19	53572335	53572336	chr19:53572336:A:G	rs16985046	A	G	A	Sox3.mouse_HMG_2	10	1	+	7.683043021290509	0.7742882419752884	CAACAATGATATTAATG
chr19	53773147	53773148	chr19:53773148:T:C	rs11084281	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr19	53785591	53785592	chr19:53785592:C:G	rs3848580	C	G	c	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr19	53795321	53795322	chr19:53795322:C:T	rs10418264	C	T	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr19	53842506	53842507	chr19:53842507:A:T	rs142919166	A	T	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr19	54110939	54110940	chr19:54110940:G:C	rs73062626	G	C	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr19	54287933	54287934	chr19:54287934:G:A	rs397600	G	A	a	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr19	54415074	54415075	chr19:54415075:T:C	rs17516390	T	C	T	Sox3.mouse_HMG_2	14	1	-	1.3089860659582102	-2.009080203813391	GGCCAATTCCATGGATA
chr19	54422031	54422032	chr19:54422032:C:T	rs75636290	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr19	54434781	54434782	chr19:54434782:C:T	rs79839542	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr19	54436834	54436835	chr19:54436835:G:T	rs76547941	G	T	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr19	54489605	54489606	chr19:54489606:A:G	rs79543930	A	G	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr19	54738369	54738370	chr19:54738370:A:G	rs10414999	A	G	.	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr19	54742313	54742314	chr19:54742314:A:C	rs35927204	A	C	.	Sox3.mouse_HMG_2	16	1	+	1.9806944567691234	0.9529975232278689	TCTCATTGTCATTGGGA
chr19	54786177	54786178	chr19:54786178:C:T	rs1489235309	C	T	.	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr19	54871700	54871701	chr19:54871701:A:C	rs79584987	A	C	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr19	55121674	55121675	chr19:55121675:C:T	rs890869	C	T	T	Sox3.mouse_HMG_2	5	1	-	5.462913707001546	11.852195141379436	TAACAGTGTCATTGAGG
chr19	55550441	55550442	chr19:55550442:T:C	rs10414140	T	C	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr19	55766898	55766899	chr19:55766899:G:A	rs67507026	G	A	-	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr19	55832265	55832266	chr19:55832266:C:T	rs302473	C	T	T	Sox3.mouse_HMG_2	1	1	-	1.1807800114161693	3.187167953435626	AGTCAATTGTTTTGGAG
chr19	55932839	55932840	chr19:55932840:G:C	rs513576	G	C	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr19	56132500	56132501	chr19:56132501:G:T	rs189447122	G	T	G	Sox3.mouse_HMG_2	14	1	+	3.143308588292958	2.4419933343159146	CCTCACTGCCAGTGGTT
chr19	56221519	56221520	chr19:56221520:T:C	rs142383251	T	C	T	Sox3.mouse_HMG_2	1	1	-	1.6884267032955982	-0.31796123872386023	CATCAATGTTATCAGAT
chr19	56223108	56223109	chr19:56223109:G:C	rs2011848	G	C	g	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr19	56321555	56321556	chr19:56321556:C:G	rs142139993	C	G	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr19	56619238	56619239	chr19:56619239:C:A	rs12985817	C	A	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr19	56864238	56864239	chr19:56864239:T:C	rs746443855	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr19	56906141	56906142	chr19:56906142:A:G	rs8100148	A	G	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr19	56906143	56906144	chr19:56906144:G:C	rs8100425	G	C	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr19	57052256	57052257	chr19:57052257:C:T	rs116846217	C	T	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr19	57224634	57224635	chr19:57224635:A:G	rs77608730	A	G	A	Sox3.mouse_HMG_2	5	1	+	0.659837097088214	-5.7294443372896735	GGTCAATGCCAAAGAGG
chr19	57273265	57273266	chr19:57273266:T:C	rs13344199	T	C	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr19	57278550	57278551	chr19:57278551:G:A	rs113836204	G	A	G	Sox3.mouse_HMG_2	9	1	-	0.57020014801203	1.2628526908839888	TGGCAATGTCAGGGAGT
chr19	57279244	57279245	chr19:57279245:G:A	rs7247503	G	A	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr19	57771509	57771510	chr19:57771510:C:G	rs61092010	C	G	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr19	57774690	57774691	chr19:57774691:G:T	rs9749314	G	T	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr19	57847175	57847176	chr19:57847176:G:C	rs2007552	G	C	.	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr19	57877891	57877892	chr19:57877892:C:G	rs13343787	C	G	.	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr19	58099467	58099468	chr19:58099468:T:C	rs1019489	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr19	58197158	58197159	chr19:58197159:C:T	rs10411535	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr19	58312796	58312797	chr19:58312797:T:C	rs8110941	T	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr19	58330572	58330573	chr19:58330573:T:C	rs60348321	T	C	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr19	58330573	58330574	chr19:58330574:C:T	rs59119314	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr19	58372794	58372795	chr19:58372795:G:T	rs62116388	G	T	t	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr19	58406622	58406623	chr19:58406623:G:A	chr19:58406623:G:A	G	A	G	Sox3.mouse_HMG_2	13	1	+	5.586307600745647	-0.46533090344066513	GCTCAATTCCAGGGATA
chr19	58406622	58406623	chr19:58406623:G:C	rs8106061	G	C	G	Sox3.mouse_HMG_2	13	1	+	5.586307600745647	-0.8009524381815654	GCTCAATTCCAGGGATA
chr19	58585016	58585017	chr19:58585017:C:T	rs112047932	C	T	c	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	646144	646145	chr2:646145:T:C	rs11127491	T	C	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	646158	646159	chr2:646159:G:A	rs35941143	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	747984	747985	chr2:747985:G:A	rs6761058	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	748028	748029	chr2:748029:G:A	rs113912290	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	881867	881868	chr2:881868:A:G	rs62103910	A	G	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr2	881868	881869	chr2:881869:C:T	rs11127530	C	T	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	905925	905926	chr2:905926:A:T	rs12993793	A	T	A	Sox3.mouse_HMG_2	6	1	-	3.880697862843379	-3.0273773649496776	CTGCAATGCCAGTGACA
chr2	1423014	1423015	chr2:1423015:G:A	rs2276701	G	A	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr2	1435492	1435493	chr2:1435493:T:G	rs1514685	T	G	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr2	1496154	1496155	chr2:1496155:A:C	rs732609	A	C	C	Sox3.mouse_HMG_2	12	1	-	2.2544844050570636	-4.132104267614651	GGTTCATGCCAGTGATG
chr2	1519421	1519422	chr2:1519422:T:C	rs28913033	T	C	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr2	1538886	1538887	chr2:1538887:T:C	rs138956821	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr2	1564068	1564069	chr2:1564069:A:G	rs11886696	A	G	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr2	1564077	1564078	chr2:1564078:C:A	rs7591940	C	A	A	Sox3.mouse_HMG_2	3	1	+	3.614869056992013	-3.285801182266892	TAGCCATGGCAGTGATG
chr2	1604993	1604994	chr2:1604994:A:G	rs113247363	A	G	A	Sox3.mouse_HMG_2	8	1	-	4.159236435262645	2.9048144691069755	TGTCAATGTCGGTGACT
chr2	1615296	1615297	chr2:1615297:T:C	rs28442208	T	C	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr2	1953939	1953940	chr2:1953940:G:A	rs73188443	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr2	1978379	1978380	chr2:1978380:C:T	rs6727561	C	T	T	Sox3.mouse_HMG_2	11	1	-	8.59243919197386	4.020955063640572	TTTCAATTATAGTGAGG
chr2	2107518	2107519	chr2:2107519:C:A	rs544759937	C	A	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr2	2152697	2152698	chr2:2152698:C:A	chr2:2152698:C:A	C	A	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr2	2459217	2459218	chr2:2459218:G:C	rs823540	G	C	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	2601984	2601985	chr2:2601985:G:T	rs7556672	G	T	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	2605602	2605603	chr2:2605603:C:T	rs4853903	C	T	C	Sox3.mouse_HMG_2	1	1	-	3.4242878140443063	5.430675756063765	TGTCAACGCCAGTGACT
chr2	2750930	2750931	chr2:2750931:T:C	rs17038881	T	C	T	Sox3.mouse_HMG_2	1	1	+	5.853349857144289	5.833131879853645	ATTGAATTTCATTGATC
chr2	3302580	3302581	chr2:3302581:G:A	rs80274430	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr2	3302623	3302624	chr2:3302624:G:A	rs552792463	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr2	3315148	3315149	chr2:3315149:C:T	rs10194678	C	T	c	Sox3.mouse_HMG_2	1	1	-	3.168911949886521	5.175299891905978	GGGCGATGCTAGTGATG
chr2	3322645	3322646	chr2:3322646:A:G	rs11902010	A	G	a	Sox3.mouse_HMG_2	10	1	+	6.238541259780037	-0.6702135195351848	GATGAATTCCATTGACA
chr2	3369213	3369214	chr2:3369214:T:A	rs62119534	T	A	T	Sox3.mouse_HMG_2	11	1	+	9.81482573682012	3.862819431073011	AATCAATTTCATTCATT
chr2	3452734	3452735	chr2:3452735:T:C	rs10207406	T	C	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	3641319	3641320	chr2:3641320:C:T	rs113226829	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr2	3658391	3658392	chr2:3658392:C:A	rs116080781	C	A	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	3780502	3780503	chr2:3780503:T:C	rs17018009	T	C	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr2	5094115	5094116	chr2:5094116:G:A	rs13409658	G	A	g	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr2	5593298	5593299	chr2:5593299:C:A	rs17363613	C	A	C	Sox3.mouse_HMG_2	0	1	-	4.567253510883221	3.7774849791049254	GCTCAATGGCTTTGTTT
chr2	5674811	5674812	chr2:5674812:G:A	rs11901730	G	A	a	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr2	5674814	5674815	chr2:5674815:G:T	rs11901732	G	T	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr2	5984392	5984393	chr2:5984393:G:A	rs35938714	G	A	G	Sox3.mouse_HMG_2	8	1	-	2.5882304494644073	3.8426524156200776	CTTCAAAGCCAGTGGTA
chr2	6012000	6012001	chr2:6012001:G:A	rs2693833	G	A	A	Sox3.mouse_HMG_2	11	1	+	6.78463213621275	2.213148007879465	GGTCAATTATAGTCATT
chr2	6164238	6164239	chr2:6164239:C:T	rs6431761	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	6193948	6193949	chr2:6193949:A:G	rs6731920	A	G	G	Sox3.mouse_HMG_2	7	1	-	1.9418503356141372	-3.5610799456286735	GATGAATTGTACTGAGG
chr2	6564446	6564447	chr2:6564447:C:T	rs16865340	C	T	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr2	6572417	6572418	chr2:6572418:T:G	rs10186870	T	G	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr2	6572423	6572424	chr2:6572424:A:G	rs35660926	A	G	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr2	6974152	6974153	chr2:6974153:T:A	rs771254	T	A	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr2	7132976	7132977	chr2:7132977:C:T	rs56833078	C	T	C	Sox3.mouse_HMG_2	3	1	+	2.488574383809975	-2.368281491412248	CACCAATTCCTTTGATA
chr2	7338765	7338766	chr2:7338766:G:A	rs4668540	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	7376045	7376046	chr2:7376046:G:A	rs62104750	G	A	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr2	7420115	7420116	chr2:7420116:A:T	rs16866222	A	T	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	7693129	7693130	chr2:7693130:C:T	rs11676467	C	T	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	7963955	7963956	chr2:7963956:G:A	rs17433500	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.656873974248186	-3.394764529938125	AAACCATGTCAGTGAGG
chr2	8543055	8543056	chr2:8543056:G:A	rs6748522	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	8578299	8578300	chr2:8578300:A:C	rs11904418	A	C	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr2	8603237	8603238	chr2:8603238:T:C	rs13384855	T	C	t	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr2	8609472	8609473	chr2:8609473:T:G	rs10929549	T	G	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	8678841	8678842	chr2:8678842:C:A	rs1269432734	C	A	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr2	8678853	8678854	chr2:8678854:G:C	rs546289411	G	C	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr2	9359729	9359730	chr2:9359730:A:G	rs2715868	A	G	A	Sox3.mouse_HMG_2	1	1	+	6.030663689543119	4.024275747523662	CATCAGTCTTATTGATG
chr2	9659268	9659269	chr2:9659269:T:A	rs1105986	T	A	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	9660382	9660383	chr2:9660383:G:A	rs62121167	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	9715607	9715608	chr2:9715608:G:A	rs4605345	G	A	G	Sox3.mouse_HMG_2	11	1	+	0.9639964790413688	-3.607487649291915	CTGCAAAGCCAGTGATG
chr2	9898169	9898170	chr2:9898170:T:C	rs72782668	T	C	T	Sox3.mouse_HMG_2	11	1	+	4.300303317145045	-2.384070882315291	TAGCAATTTCATTAATC
chr2	9907366	9907367	chr2:9907367:G:A	rs16867226	G	A	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr2	9907377	9907378	chr2:9907378:A:G	rs6744203	A	G	G	Sox3.mouse_HMG_2	12	1	-	1.5875457901229115	-4.4634213478079054	GATCAATGGCACTGCAC
chr2	9974284	9974285	chr2:9974285:T:G	rs6733974	T	G	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr2	9999278	9999279	chr2:9999279:A:G	rs16867280	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr2	10030557	10030558	chr2:10030558:A:C	rs73913966	A	C	A	Sox3.mouse_HMG_2	4	1	+	6.242128503479941	-0.6659467243131179	AATCAATGTCAGTTGTT
chr2	10575833	10575834	chr2:10575834:T:C	rs9973566	T	C	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr2	10575856	10575857	chr2:10575857:T:A	rs76761022	T	A	T	Sox3.mouse_HMG_2	1	1	-	3.9301511461820287	1.2349275871287326	TATCAATTTTCTTTATA
chr2	10689095	10689096	chr2:10689096:A:T	rs57597544	A	T	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr2	10769846	10769847	chr2:10769847:G:A	rs150663372	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr2	10788835	10788836	chr2:10788836:A:G	rs1734431	A	G	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr2	10823686	10823687	chr2:10823687:A:G	rs115983125	A	G	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	10849983	10849984	chr2:10849984:C:T	rs1734397	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr2	10881722	10881723	chr2:10881723:C:T	rs4669639	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr2	10885323	10885324	chr2:10885324:A:G	rs2357882	A	G	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr2	10932865	10932866	chr2:10932866:G:A	rs1453088	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr2	11011325	11011326	chr2:11011326:C:T	rs13022057	C	T	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr2	11345605	11345606	chr2:11345606:C:G	rs1400508478	C	G	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr2	11392227	11392228	chr2:11392228:C:T	rs13001631	C	T	C	Sox3.mouse_HMG_2	7	1	-	5.017664993976598	-1.6111565011114595	CCTGAATGCCATTGGTG
chr2	11933323	11933324	chr2:11933324:G:C	rs7598815	G	C	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr2	12097292	12097293	chr2:12097293:G:A	rs12478548	G	A	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr2	12164956	12164957	chr2:12164957:G:A	rs6722884	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr2	12605864	12605865	chr2:12605865:G:A	rs1519545	G	A	A	Sox3.mouse_HMG_2	0	1	-	2.9926984272032953	2.5075634129491866	CGTTAAAGTCAGTGATA
chr2	12669216	12669217	chr2:12669217:A:C	rs62124709	A	C	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr2	12777416	12777417	chr2:12777417:A:T	rs2161996	A	T	A	Sox3.mouse_HMG_2	7	1	-	2.712103013126303	-2.7908272681165065	TATCAGCTCCATTGATG
chr2	12790819	12790820	chr2:12790820:C:T	rs78088565	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr2	12812066	12812067	chr2:12812067:A:G	rs7597914	A	G	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr2	12815722	12815723	chr2:12815723:T:C	rs1544852	T	C	t	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr2	12857876	12857877	chr2:12857877:A:T	rs62124477	A	T	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	13285050	13285051	chr2:13285051:G:A	rs13384809	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr2	14573029	14573030	chr2:14573030:T:C	rs13412374	T	C	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	15182452	15182453	chr2:15182453:G:A	rs6730450	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	15557727	15557728	chr2:15557728:A:C	rs77955074	A	C	A	Sox3.mouse_HMG_2	12	1	-	3.0136924802310294	-3.3728961924406855	GCTCAAGGTCATTCATT
chr2	15591458	15591459	chr2:15591459:C:T	rs3755133	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	15591480	15591481	chr2:15591481:C:T	rs4668936	C	T	C	Sox3.mouse_HMG_2	11	1	-	6.980867170955787	2.4093830426225016	CACCAATGCCAGTGAGT
chr2	15637304	15637305	chr2:15637305:G:A	rs807629	G	A	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr2	15787274	15787275	chr2:15787275:C:G	rs4668984	C	G	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr2	15818348	15818349	chr2:15818349:A:G	rs565412147	A	G	A	Sox3.mouse_HMG_2	11	1	-	8.74049839883599	2.056124199375654	AATCAATTTCATTGGCG
chr2	15989859	15989860	chr2:15989860:C:T	rs77669638	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr2	16130024	16130025	chr2:16130025:T:A	rs141026745	T	A	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr2	16425305	16425306	chr2:16425306:C:T	rs904434977	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr2	16682724	16682725	chr2:16682725:T:C	rs1524552	T	C	t	Sox3.mouse_HMG_2	12	1	+	1.8736133255222367	-4.1773538124085805	AGTCAAAGGTATTGGGG
chr2	16872748	16872749	chr2:16872749:A:G	rs4832477	A	G	A	Sox3.mouse_HMG_2	12	1	-	2.8903433987838736	-3.1606237391469434	GATGAATTCCAGTGTAT
chr2	17090666	17090667	chr2:17090667:C:G	rs10172455	C	G	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr2	17314479	17314480	chr2:17314480:T:C	rs62125589	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.29240746505133	-3.096873969326557	CATCAAGTGTGTTGATG
chr2	17315869	17315870	chr2:17315870:G:A	rs1519973	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr2	17519966	17519967	chr2:17519967:G:A	rs11885715	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	17764975	17764976	chr2:17764976:A:G	rs16981869	A	G	A	Sox3.mouse_HMG_2	5	1	+	1.7471535157281952	-4.642127918649692	TCTCAATGCTGGTGGTC
chr2	18347628	18347629	chr2:18347629:A:C	rs1027156	A	C	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr2	18476532	18476533	chr2:18476533:T:A	rs11680595	T	A	T	Sox3.mouse_HMG_2	16	1	+	5.052692776243429	4.477396660124233	TCTCAATGCCCTTGAAT
chr2	18559482	18559483	chr2:18559483:A:G	rs34722188	A	G	A	Sox3.mouse_HMG_2	16	1	+	5.649105556508815	5.860679982994065	CTTCAATGACAGTTATA
chr2	18980706	18980707	chr2:18980707:A:G	rs6531143	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.021798524356618	-4.367482910021271	CTTCTATGACAGTGGTG
chr2	19607986	19607987	chr2:19607987:A:G	rs6750652	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	19625858	19625859	chr2:19625859:C:T	rs1453186	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr2	19670381	19670382	chr2:19670382:T:C	rs17619443	T	C	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr2	19718672	19718673	chr2:19718673:C:G	rs2881742	C	G	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr2	19796398	19796399	chr2:19796399:G:A	rs140413937	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr2	20138012	20138013	chr2:20138013:T:C	rs6531210	T	C	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr2	20138014	20138015	chr2:20138015:T:G	rs6531211	T	G	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr2	20209997	20209998	chr2:20209998:A:G	rs3771249	A	G	A	Sox3.mouse_HMG_2	6	1	-	11.277049799355671	4.887768364977779	GACCAATGTCAGTGATT
chr2	20216653	20216654	chr2:20216654:C:T	rs114985383	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr2	20245877	20245878	chr2:20245878:T:C	rs2110410	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr2	20355456	20355457	chr2:20355457:T:G	rs11898408	T	G	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr2	20625845	20625846	chr2:20625846:A:T	chr2:20625846:A:T	A	T	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr2	20629431	20629432	chr2:20629432:A:G	rs10187254	A	G	G	Sox3.mouse_HMG_2	6	1	-	4.614947989866258	-1.7743334445116312	CCTCCATGTCAGTGAGG
chr2	20682673	20682674	chr2:20682674:T:C	rs56220106	T	C	T	Sox3.mouse_HMG_2	5	1	-	10.957373148384328	4.568091714006439	GATTAATGCCAGTGATA
chr2	20682688	20682689	chr2:20682689:A:G	rs13382862	A	G	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	20727829	20727830	chr2:20727830:T:C	rs4971544	T	C	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr2	21163614	21163615	chr2:21163615:C:G	rs11683495	C	G	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	21181662	21181663	chr2:21181663:G:T	rs59056084	G	T	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr2	21301956	21301957	chr2:21301957:A:C	rs391070	A	C	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	21756205	21756206	chr2:21756206:C:G	rs74680820	C	G	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr2	21856897	21856898	chr2:21856898:C:T	rs1519491	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	22335736	22335737	chr2:22335737:A:G	rs4558612	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	22759025	22759026	chr2:22759026:A:G	rs12053564	A	G	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr2	22802155	22802156	chr2:22802156:G:A	rs13384029	G	A	G	Sox3.mouse_HMG_2	3	1	-	3.694832543878672	-1.1620233313435484	AGACGATGTCAGTGATA
chr2	22821935	22821936	chr2:22821936:C:T	rs7605946	C	T	T	Sox3.mouse_HMG_2	11	1	+	1.5695746789033047	8.25394887836364	CATCCATGCCACTGAAT
chr2	23053717	23053718	chr2:23053718:T:G	rs115611459	T	G	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	23201052	23201053	chr2:23201053:G:A	rs57493014	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	23285169	23285170	chr2:23285170:C:T	rs34506372	C	T	C	Sox3.mouse_HMG_2	8	1	+	6.2219954163882525	7.476417382543922	TAATAATGCTATTGAGA
chr2	23411768	23411769	chr2:23411769:G:A	rs115595406	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr2	23465057	23465058	chr2:23465058:T:C	rs77418123	T	C	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr2	23803625	23803626	chr2:23803626:C:A	rs74633660	C	A	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr2	23901075	23901076	chr2:23901076:A:G	rs77724890	A	G	a	Sox3.mouse_HMG_2	13	1	+	3.745924174429693	9.797562678616005	GCTCAATATTATTAATA
chr2	24012103	24012104	chr2:24012104:T:C	rs2339938	T	C	C	Sox3.mouse_HMG_2	9	1	+	6.9699527323998165	6.277300189527857	CTGCAATGGTATTGACT
chr2	24301855	24301856	chr2:24301856:A:G	rs72793213	A	G	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr2	24817553	24817554	chr2:24817554:G:A	rs10178420	G	A	A	Sox3.mouse_HMG_2	7	1	+	5.598718893575708	-1.0301026015123476	ATTGAATGTCAGTGATC
chr2	24827537	24827538	chr2:24827538:G:A	rs116538472	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr2	25050767	25050768	chr2:25050768:G:C	rs13030697	G	C	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	25370964	25370965	chr2:25370965:G:C	rs35800274	G	C	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr2	25675815	25675816	chr2:25675816:A:G	rs60619459	A	G	A	Sox3.mouse_HMG_2	8	1	-	6.332448263942388	5.078026297786716	GTTCAATGTCACTGAGA
chr2	25682126	25682127	chr2:25682127:T:C	rs13432577	T	C	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr2	26067794	26067795	chr2:26067795:A:T	rs75106048	A	T	A	Sox3.mouse_HMG_2	5	1	+	3.464790664232355	-3.4432845635607006	ATTCAATGTCTGTGAAA
chr2	26501856	26501857	chr2:26501857:T:G	rs6547079	T	G	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr2	26528556	26528557	chr2:26528557:C:T	rs7583853	C	T	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr2	26538350	26538351	chr2:26538351:G:A	rs11687195	G	A	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	26540277	26540278	chr2:26540278:G:A	rs11690336	G	A	G	Sox3.mouse_HMG_2	13	1	+	3.3452423890781064	-2.7063961151082045	AAACCATTTCATTGAAG
chr2	26568585	26568586	chr2:26568586:A:C	rs939815	A	C	A	Sox3.mouse_HMG_2	5	1	+	3.554356847450224	-3.3537183803428334	TGTCAATTCCATTCAAC
chr2	26594929	26594930	chr2:26594930:A:G	rs56414406	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr2	26892435	26892436	chr2:26892436:T:C	rs4665919	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr2	27008276	27008277	chr2:27008277:G:A	rs2053385	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr2	27167300	27167301	chr2:27167301:A:G	rs62128743	A	G	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	27499103	27499104	chr2:27499104:T:C	rs813592	T	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	27518369	27518370	chr2:27518370:T:C	rs780094	T	C	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr2	27735987	27735988	chr2:27735988:C:G	rs6753736	C	G	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr2	27958051	27958052	chr2:27958052:C:G	rs72812510	C	G	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	28134683	28134684	chr2:28134684:G:A	rs62140459	G	A	G	Sox3.mouse_HMG_2	16	1	-	2.315154587668003	3.918147637328454	CCTCAATAATAGTGAGC
chr2	28239267	28239268	chr2:28239268:G:A	rs17006629	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr2	28251455	28251456	chr2:28251456:G:A	rs4666045	G	A	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr2	28287479	28287480	chr2:28287480:A:G	rs10495763	A	G	A	Sox3.mouse_HMG_2	10	1	+	5.568645662375847	-1.3401091169393753	AATCAATGCCAGTTAGT
chr2	28427638	28427639	chr2:28427639:G:A	rs6731639	G	A	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr2	28585068	28585069	chr2:28585069:A:G	rs4665428	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.682631922439581	-1.7066495119383074	GTTCAATGTTAATTATT
chr2	28681524	28681525	chr2:28681525:T:C	rs61373158	T	C	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr2	28864947	28864948	chr2:28864948:C:A	rs55785599	C	A	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr2	29269932	29269933	chr2:29269933:G:A	rs568987993	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	29273682	29273683	chr2:29273683:A:G	rs7587031	A	G	G	Sox3.mouse_HMG_2	4	1	+	3.468171352615757	-2.921110081762132	AATCAGTGCTGTTGATT
chr2	29296608	29296609	chr2:29296609:C:A	rs13406263	C	A	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr2	29336932	29336933	chr2:29336933:G:A	rs35506497	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr2	29477216	29477217	chr2:29477217:A:G	rs4467230	A	G	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr2	29548541	29548542	chr2:29548542:C:A	rs62131120	C	A	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	29586994	29586995	chr2:29586995:G:A	rs11686243	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	29655458	29655459	chr2:29655459:A:G	rs954029	A	G	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr2	29655504	29655505	chr2:29655505:G:A	rs954028	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr2	30254280	30254281	chr2:30254281:T:C	rs13027149	T	C	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr2	30259232	30259233	chr2:30259233:G:A	rs906864	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr2	30380932	30380933	chr2:30380933:C:T	rs6707509	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	30665479	30665480	chr2:30665480:C:A	rs4952173	C	A	C	Sox3.mouse_HMG_2	3	1	+	2.091291201246228	-4.809379038012679	GATCTTTGGCATTGAAT
chr2	30684324	30684325	chr2:30684325:C:T	rs78361702	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr2	30744720	30744721	chr2:30744721:T:C	rs72783020	T	C	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	31038382	31038383	chr2:31038383:C:T	rs7565923	C	T	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr2	31786145	31786146	chr2:31786146:G:A	rs77343015	G	A	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	31980097	31980098	chr2:31980098:C:T	rs7574910	C	T	T	Sox3.mouse_HMG_2	1	1	+	4.882476535633789	4.902694512924433	ACTAAATTATATTGATG
chr2	32242419	32242420	chr2:32242420:A:C	rs212724	A	C	C	Sox3.mouse_HMG_2	2	1	-	3.090241260938563	-2.0636334057413284	GGTCAATTTCATATATG
chr2	32356061	32356062	chr2:32356062:G:A	rs947016612	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr2	32628583	32628584	chr2:32628584:A:G	rs113547951	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	32628588	32628589	chr2:32628589:G:A	rs6711579	G	A	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	32820561	32820562	chr2:32820562:G:C	rs3820915	G	C	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr2	32927010	32927011	chr2:32927011:T:C	rs76617644	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.7998363445350183	-2.5894450898428722	GAACAATGCCTTTGACT
chr2	33086729	33086730	chr2:33086730:G:A	rs219107	G	A	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	33242890	33242891	chr2:33242891:A:C	rs80086591	A	C	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	33242912	33242913	chr2:33242913:A:G	rs182831851	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.805157521476925	-2.879216677983411	ATTCAGTTTCATTGAGA
chr2	33251064	33251065	chr2:33251065:A:G	rs78270585	A	G	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr2	33375347	33375348	chr2:33375348:G:C	rs17585007	G	C	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr2	33412276	33412277	chr2:33412277:A:G	rs142760577	A	G	A	Sox3.mouse_HMG_2	5	1	+	8.13254526583291	1.7432638314550195	TAACAATTTTATTTATT
chr2	33480930	33480931	chr2:33480931:G:C	rs72865973	G	C	g	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr2	33511288	33511289	chr2:33511289:T:G	rs78696285	T	G	T	Sox3.mouse_HMG_2	4	1	-	3.847212406600958	-3.0608628211920994	TGTCAATGTTATTTTAG
chr2	33559733	33559734	chr2:33559734:G:A	rs12478742	G	A	G	Sox3.mouse_HMG_2	16	1	+	2.6866648158869992	2.475090389401749	AAGCAATGTCATGGAGG
chr2	33590316	33590317	chr2:33590317:T:G	rs6708570	T	G	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr2	33822029	33822030	chr2:33822030:A:G	rs77075221	A	G	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr2	33879926	33879927	chr2:33879927:G:C	rs773831	G	C	C	Sox3.mouse_HMG_2	3	1	-	1.8199017900706342	-4.230617519818662	CCTCAACGTCAGAGATG
chr2	33882124	33882125	chr2:33882125:G:T	rs1851433	G	T	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr2	33894176	33894177	chr2:33894177:T:G	rs1510874	T	G	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	33894197	33894198	chr2:33894198:T:A	rs1510873	T	A	T	Sox3.mouse_HMG_2	16	1	+	4.968550301726957	4.393254185607761	GTTCAAGTTTATTGTTT
chr2	34210436	34210437	chr2:34210437:C:T	rs150404586	C	T	C	Sox3.mouse_HMG_2	1	1	+	3.8475073335528465	3.867725310843492	ACACATTGTCATTGATA
chr2	34667233	34667234	chr2:34667234:T:G	rs4670388	T	G	T	Sox3.mouse_HMG_2	9	1	-	3.5434085627062863	8.834737279718647	GAACAAGGTAATTGATT
chr2	34667249	34667250	chr2:34667250:A:C	rs1527597	A	C	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr2	35398569	35398570	chr2:35398570:T:A	rs72786503	T	A	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	35468441	35468442	chr2:35468442:C:G	rs13388298	C	G	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr2	35503875	35503876	chr2:35503876:T:A	rs11124446	T	A	A	Sox3.mouse_HMG_2	1	1	-	4.624594036710466	1.9293704776571712	GATTAAGGCCAGTGATT
chr2	35507586	35507587	chr2:35507587:A:G	rs4567910	A	G	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr2	35614709	35614710	chr2:35614710:T:C	rs12475450	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr2	35788779	35788780	chr2:35788780:C:T	rs7583925	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr2	35788785	35788786	chr2:35788786:T:C	rs7597892	T	C	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr2	35788808	35788809	chr2:35788809:T:A	rs7597973	T	A	A	Sox3.mouse_HMG_2	9	1	+	3.3333238513267744	-2.650657408557544	AGTCAGTGATAGTGAAA
chr2	35938764	35938765	chr2:35938765:G:A	rs2968625	G	A	A	Sox3.mouse_HMG_2	16	1	+	8.135533910608903	7.923959484123651	TGTCAGTGATATTGATG
chr2	36027886	36027887	chr2:36027887:A:G	rs1397443	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr2	36338860	36338861	chr2:36338861:T:A	rs12621609	T	A	T	Sox3.mouse_HMG_2	9	1	+	4.27761944568543	-1.7063618141988877	TAACAATTCTACTGAAT
chr2	36469401	36469402	chr2:36469402:A:G	rs3770857	A	G	A	Sox3.mouse_HMG_2	15	1	-	2.0121990598695976	-1.767600357636198	CCTCACTGTTAGTGCTG
chr2	36486241	36486242	chr2:36486242:T:C	rs11890094	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr2	36588883	36588884	chr2:36588884:T:C	rs848611	T	C	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr2	36660135	36660136	chr2:36660136:G:A	rs142659321	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr2	36707743	36707744	chr2:36707744:G:A	rs10182004	G	A	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr2	36707788	36707789	chr2:36707789:C:T	rs10181855	C	T	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr2	37349708	37349709	chr2:37349709:A:G	rs10196818	A	G	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr2	37377625	37377626	chr2:37377626:G:A	rs4233922	G	A	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	37380142	37380143	chr2:37380143:T:C	rs11886889	T	C	T	Sox3.mouse_HMG_2	11	1	+	1.7368265518660504	-4.947547647594284	CAGCCATGTCATTGGTC
chr2	37415747	37415748	chr2:37415748:T:G	rs4670708	T	G	T	Sox3.mouse_HMG_2	14	1	+	1.6048988106131177	2.3062140645901614	GCTCCATGACAGTGTTG
chr2	37581467	37581468	chr2:37581468:C:A	rs10208172	C	A	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr2	37718911	37718912	chr2:37718912:A:G	rs4670768	A	G	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr2	37740439	37740440	chr2:37740440:A:G	rs140835244	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.106820977926417	-0.2824604564514704	AGTCAATGCTGGTGATG
chr2	37832629	37832630	chr2:37832630:C:A	rs749795407	C	A	C	Sox3.mouse_HMG_2	8	1	-	2.324314157630684	3.1379520906348963	AAACAAGGGTAGTGAGA
chr2	37918899	37918900	chr2:37918900:A:G	rs75921425	A	G	A	Sox3.mouse_HMG_2	6	1	-	9.073561349056156	2.6842799146782657	CTTCAGTGCTATTGATT
chr2	38265444	38265445	chr2:38265445:C:T	rs1972974	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr2	38729804	38729805	chr2:38729805:A:G	rs2272445	A	G	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr2	38799003	38799004	chr2:38799004:A:G	rs190599962	A	G	a	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr2	38806447	38806448	chr2:38806448:T:C	rs3099968	T	C	T	Sox3.mouse_HMG_2	6	1	+	2.4150719158403855	-3.9742095185375055	AGTCAGTGGTATTGCTG
chr2	39100083	39100084	chr2:39100084:T:C	rs297154	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.1819557091610213	-3.2073257252168674	GATTAATGATGTTGAGT
chr2	39216498	39216499	chr2:39216499:G:A	rs56844025	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr2	39302734	39302735	chr2:39302735:A:G	rs10865150	A	G	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr2	39619682	39619683	chr2:39619683:G:A	rs10194567	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr2	39672294	39672295	chr2:39672295:A:G	rs917964	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr2	40240833	40240834	chr2:40240834:T:C	rs56410612	T	C	T	Sox3.mouse_HMG_2	11	1	-	2.80673376915028	7.378217897483565	GTGCAATGGCAATGATC
chr2	40245065	40245066	chr2:40245066:T:C	rs961784104	T	C	T	Sox3.mouse_HMG_2	5	1	-	6.745495070951906	0.3562136365740178	GCTCAATTATATTGGCT
chr2	40353777	40353778	chr2:40353778:A:C	rs11690171	A	C	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr2	40515342	40515343	chr2:40515343:C:G	rs12479405	C	G	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr2	40553561	40553562	chr2:40553562:A:G	rs72800323	A	G	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr2	40841957	40841958	chr2:40841958:T:C	rs7597016	T	C	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr2	41077977	41077978	chr2:41077978:A:G	rs17684108	A	G	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr2	41329552	41329553	chr2:41329553:T:C	rs13419110	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	41600619	41600620	chr2:41600620:T:G	rs191620486	T	G	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr2	41742849	41742850	chr2:41742850:T:G	rs543142362	T	G	T	Sox3.mouse_HMG_2	15	1	+	5.910058047694415	3.1729309029743895	TATCAATTCCATAGGTA
chr2	41765073	41765074	chr2:41765074:G:C	rs72788663	G	C	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	41821336	41821337	chr2:41821337:G:A	rs4245777	G	A	G	Sox3.mouse_HMG_2	9	1	-	0.7819378014745187	1.474590344346478	CAGCATTGGCAGTGGTG
chr2	41899525	41899526	chr2:41899526:T:C	rs116330645	T	C	T	Sox3.mouse_HMG_2	11	1	+	4.748105836841164	-1.936268362619171	CTTCAATGTGATTGGAG
chr2	41929065	41929066	chr2:41929066:G:C	rs10495892	G	C	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr2	42077826	42077827	chr2:42077827:G:A	rs13431388	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr2	42128299	42128300	chr2:42128300:G:A	chr2:42128300:G:A	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr2	42411037	42411038	chr2:42411038:A:T	rs78079912	A	T	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr2	42824032	42824033	chr2:42824033:T:G	rs114911164	T	G	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr2	42824034	42824035	chr2:42824035:C:T	rs12997857	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr2	42886216	42886217	chr2:42886217:C:T	rs4350801	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	42985254	42985255	chr2:42985255:T:C	rs6544622	T	C	C	Sox3.mouse_HMG_2	2	1	-	3.2144299336517363	1.342212042755382	CTACAATGTTGTTGAGA
chr2	42985275	42985276	chr2:42985276:G:A	rs12476250	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	43026207	43026208	chr2:43026208:C:T	rs2121356	C	T	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	43081865	43081866	chr2:43081866:G:A	rs774476863	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr2	43553802	43553803	chr2:43553803:T:C	rs13000971	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr2	43590106	43590107	chr2:43590107:A:G	rs78925283	A	G	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr2	43727652	43727653	chr2:43727653:C:T	rs10199649	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr2	43845436	43845437	chr2:43845437:G:T	rs4299376	G	T	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr2	43875095	43875096	chr2:43875096:T:C	rs4148220	T	C	T	Sox3.mouse_HMG_2	6	1	+	5.2349166070005175	-1.1543648273773717	TAATAATGGCAGTGAAG
chr2	44112211	44112212	chr2:44112212:G:A	rs531389657	G	A	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr2	44268417	44268418	chr2:44268418:T:C	rs1013376003	T	C	T	Sox3.mouse_HMG_2	15	1	-	6.4629384021026475	6.0292009508413065	CAACAATGTAAGTGAAT
chr2	44678358	44678359	chr2:44678359:T:C	rs510026	T	C	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr2	44802278	44802279	chr2:44802279:T:C	rs114674148	T	C	T	Sox3.mouse_HMG_2	2	1	-	3.6060525090643267	1.7338346181679716	CTACAATTTCAGTGGGA
chr2	44869457	44869458	chr2:44869458:C:T	rs62131172	C	T	T	Sox3.mouse_HMG_2	11	1	-	3.271131648858544	-1.3003524794747403	CATTCATTGCAGTGATG
chr2	44918721	44918722	chr2:44918722:G:A	rs477659	G	A	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr2	45042682	45042683	chr2:45042683:A:G	rs6544780	A	G	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr2	45056819	45056820	chr2:45056820:G:A	rs7583949	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr2	45168157	45168158	chr2:45168158:T:C	rs2063927	T	C	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr2	45196018	45196019	chr2:45196019:T:C	rs141727475	T	C	T	Sox3.mouse_HMG_2	10	1	-	1.9250701294538684	-4.983684649861351	GATAATTTCTATTGATC
chr2	45201611	45201612	chr2:45201612:C:A	rs11688264	C	A	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr2	45267255	45267256	chr2:45267256:T:G	rs536896012	T	G	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr2	45543592	45543593	chr2:45543593:G:A	rs3770292	G	A	A	Sox3.mouse_HMG_2	11	1	+	6.134996467878052	1.5635123395447668	TTTCAATTTCAGTGTAA
chr2	45730025	45730026	chr2:45730026:C:T	rs13405474	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	45744242	45744243	chr2:45744243:A:G	rs146130377	A	G	A	Sox3.mouse_HMG_2	1	1	+	10.205013458816213	8.198625516796755	AATCAATGGTAGTGGAT
chr2	45804402	45804403	chr2:45804403:C:A	rs62127182	C	A	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr2	45820666	45820667	chr2:45820667:G:A	rs34274023	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr2	45849769	45849770	chr2:45849770:C:T	rs10166595	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr2	45920574	45920575	chr2:45920575:G:A	rs74889586	G	A	G	Sox3.mouse_HMG_2	14	1	-	4.398709742975526	6.4118568368155255	CATCCATGTCAGTGCTT
chr2	45936528	45936529	chr2:45936529:C:T	rs1385854720	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr2	45936537	45936538	chr2:45936538:C:T	rs6741319	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	45936538	45936539	chr2:45936539:G:A	rs1350918590	G	A	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr2	45936566	45936567	chr2:45936567:C:T	rs548196670	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	45945971	45945972	chr2:45945972:A:T	rs73926118	A	T	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr2	46001874	46001875	chr2:46001875:A:T	chr2:46001875:A:T	A	T	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr2	46016173	46016174	chr2:46016174:A:G	rs3738898	A	G	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr2	46016176	46016177	chr2:46016177:C:A	rs77652094	C	A	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr2	46067671	46067672	chr2:46067672:T:C	rs12712962	T	C	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	46067709	46067710	chr2:46067710:C:A	rs6730511	C	A	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr2	46102279	46102280	chr2:46102280:C:G	rs4953317	C	G	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr2	46119754	46119755	chr2:46119755:G:C	rs148417321	G	C	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	46131400	46131401	chr2:46131401:A:G	rs564993415	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	46134115	46134116	chr2:46134116:A:C	rs12105417	A	C	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	46248657	46248658	chr2:46248658:C:T	rs11681778	C	T	T	Sox3.mouse_HMG_2	7	1	-	3.543713982641463	-3.085107512446594	GTTCAACGTCATTGCTG
chr2	46249885	46249886	chr2:46249886:A:G	rs78446731	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.219879774280595	-2.4644944251797414	ATGCAATTCCATTGAAA
chr2	46284799	46284800	chr2:46284800:C:T	rs1000531	C	T	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	46284836	46284837	chr2:46284837:T:C	rs1000532	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr2	46308116	46308117	chr2:46308117:G:T	rs62136961	G	T	G	Sox3.mouse_HMG_2	8	1	+	0.5059085839934264	1.319546516997639	CCTCAAAGGCAGTGCTG
chr2	46309969	46309970	chr2:46309970:C:A	rs11886469	C	A	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr2	46334760	46334761	chr2:46334761:A:C	rs10192945	A	C	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr2	46334769	46334770	chr2:46334770:A:G	rs78054941	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.629242598031815	-1.7600388363460755	GCTCAATGTTATTTGAG
chr2	46350125	46350126	chr2:46350126:A:C	rs6544888	A	C	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr2	46363194	46363195	chr2:46363195:C:G	rs1530631	C	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	46363244	46363245	chr2:46363245:G:C	rs1530632	G	C	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr2	46486181	46486182	chr2:46486182:T:C	rs4953389	T	C	C	Sox3.mouse_HMG_2	10	1	-	6.508278138270085	-0.40047664104513553	TATCAATGGGATTGGAT
chr2	46496079	46496080	chr2:46496080:C:A	rs7590802	C	A	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	46498655	46498656	chr2:46498656:C:T	rs7579208	C	T	C	Sox3.mouse_HMG_2	12	1	+	3.287767717686928	9.338734855617744	AATCAATTCTAGCGGTC
chr2	46535508	46535509	chr2:46535509:G:A	rs74331478	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	46559351	46559352	chr2:46559352:G:A	rs12712976	G	A	A	Sox3.mouse_HMG_2	13	1	+	6.638165400255502	0.5865268960691905	TATTAATGATAGTGTTT
chr2	46843687	46843688	chr2:46843688:A:G	rs1579862	A	G	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr2	46917063	46917064	chr2:46917064:C:G	rs13388612	C	G	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr2	46981835	46981836	chr2:46981836:G:A	rs34800049	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	47008880	47008881	chr2:47008881:T:G	chr2:47008881:T:G	T	G	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr2	47134839	47134840	chr2:47134840:T:C	rs145474165	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	47493505	47493506	chr2:47493506:T:A	rs6759990	T	A	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	47493509	47493510	chr2:47493510:C:A	rs114866457	C	A	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	47680102	47680103	chr2:47680103:C:T	rs79924484	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr2	47716308	47716309	chr2:47716309:G:A	rs61637835	G	A	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr2	47738549	47738550	chr2:47738550:G:A	rs6760246	G	A	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr2	47857750	47857751	chr2:47857751:G:A	rs77268227	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr2	47894048	47894049	chr2:47894049:T:C	rs188986161	T	C	T	Sox3.mouse_HMG_2	7	1	+	2.5875668241588574	-2.9153634570839553	CATCAATTTCAATCAAG
chr2	48257327	48257328	chr2:48257328:C:T	rs12713007	C	T	C	Sox3.mouse_HMG_2	11	1	-	5.11489636086771	0.543412232534425	GAACAGTGGTAGTGAGT
chr2	48303888	48303889	chr2:48303889:G:A	rs11686007	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr2	48420886	48420887	chr2:48420887:G:A	rs10454134	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr2	48420919	48420920	chr2:48420920:T:C	rs1387146319	T	C	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr2	48444626	48444627	chr2:48444627:A:G	rs55757090	A	G	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	48754506	48754507	chr2:48754507:A:G	rs4073656	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr2	48885992	48885993	chr2:48885993:A:G	rs116040692	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr2	49433196	49433197	chr2:49433197:G:A	rs1569110	G	A	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr2	49737210	49737211	chr2:49737211:G:A	rs17489439	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr2	50086698	50086699	chr2:50086699:G:A	rs4641977	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr2	50134810	50134811	chr2:50134811:T:C	rs11125289	T	C	T	Sox3.mouse_HMG_2	13	1	-	5.127617220174735	11.179255724361049	CATCAATTTCATCAATG
chr2	50707687	50707688	chr2:50707688:C:T	rs116016217	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr2	52365917	52365918	chr2:52365918:C:G	rs4971810	C	G	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr2	52681488	52681489	chr2:52681489:T:C	rs350792	T	C	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr2	52704993	52704994	chr2:52704994:T:C	rs6738153	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.504705882134089	-1.1796683173262459	AGAGAATGGTATTGATG
chr2	52867649	52867650	chr2:52867650:T:C	rs10173886	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.891544529028094	-0.7928296704322415	GGTCTATGATATTGAAA
chr2	52898029	52898030	chr2:52898030:C:T	rs543654449	C	T	C	Sox3.mouse_HMG_2	3	1	+	1.7906854354469868	-3.066170439775236	GGTCAATTACTGTGACT
chr2	53243695	53243696	chr2:53243696:T:C	rs1364681	T	C	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr2	53248119	53248120	chr2:53248120:T:C	rs13399090	T	C	T	Sox3.mouse_HMG_2	6	1	+	5.754940475638721	-0.6343409587391691	CATAAATTCCAGTGAAT
chr2	53313555	53313556	chr2:53313556:A:C	rs11895925	A	C	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr2	54093637	54093638	chr2:54093638:G:C	rs13418839	G	C	G	Sox3.mouse_HMG_2	7	1	+	5.25824000321166	-1.3705814918763966	TAACAATGATATTAAAT
chr2	54093661	54093662	chr2:54093662:C:T	rs13418658	C	T	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr2	54528740	54528741	chr2:54528741:A:G	rs4319969	A	G	A	Sox3.mouse_HMG_2	4	1	+	1.9193789537707844	-4.469902480607102	GAGCATTGCTAGTGAGG
chr2	54590315	54590316	chr2:54590316:A:T	rs10206143	A	T	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr2	54801369	54801370	chr2:54801370:C:T	rs112235365	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	54953300	54953301	chr2:54953301:A:G	rs17046510	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr2	55018040	55018041	chr2:55018041:T:C	rs12477711	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	55421201	55421202	chr2:55421202:A:G	rs3762512	A	G	A	Sox3.mouse_HMG_2	14	1	+	4.918670318437779	1.600604048666178	TATAAATGTCATTAATG
chr2	55585884	55585885	chr2:55585885:C:G	rs75368071	C	G	C	Sox3.mouse_HMG_2	0	1	-	4.2251388165181565	3.9205052989939686	GCTCAGTGTTATTTATT
chr2	55618925	55618926	chr2:55618926:A:G	rs571745368	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	55618929	55618930	chr2:55618930:A:G	rs1404460700	A	G	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr2	55883534	55883535	chr2:55883535:C:A	rs17047297	C	A	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr2	56514884	56514885	chr2:56514885:T:C	rs7606299	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.943527422147642	-2.4457540122302466	GCTCTATGATAGTGAGT
chr2	56576229	56576230	chr2:56576230:G:A	rs4672142	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	57171865	57171866	chr2:57171866:T:C	rs984663	T	C	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr2	57237416	57237417	chr2:57237417:G:A	rs75345425	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	57396242	57396243	chr2:57396243:C:T	rs76675973	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr2	57488280	57488281	chr2:57488281:T:C	rs62159032	T	C	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr2	57764976	57764977	chr2:57764977:G:A	rs13032423	G	A	g	Sox3.mouse_HMG_2	1	1	+	6.895284184183623	8.901672126203081	CGTCAATGATAGTGGCT
chr2	59806348	59806349	chr2:59806349:C:T	rs7565849	C	T	T	Sox3.mouse_HMG_2	5	1	-	8.57997053769666	14.96925197207455	GCTCAGTGATATTGATT
chr2	59909391	59909392	chr2:59909392:T:C	rs73932454	T	C	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr2	59997193	59997194	chr2:59997194:A:T	rs6731782	A	T	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr2	60125840	60125841	chr2:60125841:C:T	rs115277064	C	T	C	Sox3.mouse_HMG_2	16	1	-	3.4491696818236295	3.237595255338379	AATCAATTTAATTGGCG
chr2	60360206	60360207	chr2:60360207:G:C	rs17027584	G	C	G	Sox3.mouse_HMG_2	1	1	-	2.6737521146559238	3.382805708980407	CCTCAAAGGTAGTGGTC
chr2	60379871	60379872	chr2:60379872:T:G	rs243027	T	G	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	60441800	60441801	chr2:60441801:A:G	rs75617493	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.0660897181124325	-3.3231917162654567	GATCAAGGCCAGTAATG
chr2	60992879	60992880	chr2:60992880:C:T	rs10182774	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr2	61117759	61117760	chr2:61117760:T:C	rs77001332	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.171753268855862	-2.2175281655220274	GGTCAATGTGAATGATC
chr2	61365601	61365602	chr2:61365602:A:G	rs72813566	A	G	A	Sox3.mouse_HMG_2	6	1	-	4.836984471465643	-1.552296962912246	AATTAATTGTATTTATT
chr2	61671761	61671762	chr2:61671762:A:G	chr2:61671762:A:G	A	G	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr2	61715710	61715711	chr2:61715711:C:A	rs2421436	C	A	C	Sox3.mouse_HMG_2	13	1	-	4.148206801879687	-2.2390532370475245	ATCCAATGTCAGTGAGT
chr2	62294969	62294970	chr2:62294970:G:A	rs4558575	G	A	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr2	62497779	62497780	chr2:62497780:G:C	rs62178012	G	C	G	Sox3.mouse_HMG_2	10	1	+	2.0148956486109726	2.0148956486109726	GCTAAATGGTGTTGATG
chr2	62589883	62589884	chr2:62589884:G:C	rs17576670	G	C	G	Sox3.mouse_HMG_2	13	1	+	2.265161097722961	-4.122098941204252	GAGCAATGTCACTGGTC
chr2	62631321	62631322	chr2:62631322:C:T	rs35561669	C	T	c	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr2	62774003	62774004	chr2:62774004:C:T	rs1123508	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	63261654	63261655	chr2:63261655:T:C	rs2699396	T	C	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr2	63743327	63743328	chr2:63743328:A:T	rs17619855	A	T	A	Sox3.mouse_HMG_2	16	1	+	3.6065219359247336	4.18181805204393	CATCAATGTTAGAGTCA
chr2	64258330	64258331	chr2:64258331:T:G	rs2251764	T	G	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr2	64266011	64266012	chr2:64266012:A:G	rs869739	A	G	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr2	64405434	64405435	chr2:64405435:A:G	rs72812038	A	G	A	Sox3.mouse_HMG_2	15	1	-	0.4754938610583514	-3.304305556447445	GCCCAATGGCTGTGATG
chr2	64515489	64515490	chr2:64515490:T:C	rs78136426	T	C	t	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	64515493	64515494	chr2:64515494:A:G	rs183575940	A	G	a	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	64679021	64679022	chr2:64679022:G:A	rs549052290	G	A	G	Sox3.mouse_HMG_2	13	1	+	7.468778808088569	1.417140303902257	GGTTAATTTTAGTGAAA
chr2	64915385	64915386	chr2:64915386:T:A	rs149257374	T	A	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr2	64954118	64954119	chr2:64954119:A:C	rs6725785	A	C	A	Sox3.mouse_HMG_2	12	1	-	2.6923046721777935	-3.6942840004939224	TGTGAATGGAAGTGATT
chr2	65135034	65135035	chr2:65135035:T:C	rs4671118	T	C	C	Sox3.mouse_HMG_2	10	1	-	6.869400743012906	-0.03935403630231489	TCTTAATTTCATTGAAG
chr2	65226786	65226787	chr2:65226787:T:C	rs34813149	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr2	65421402	65421403	chr2:65421403:T:C	rs76707106	T	C	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr2	65491781	65491782	chr2:65491782:C:T	rs934735	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.9001340023134885	-3.151504501872824	CATCATTTTTAGTGGCT
chr2	65565911	65565912	chr2:65565912:A:G	rs73935237	A	G	A	Sox3.mouse_HMG_2	2	1	-	3.8144814522625747	-2.5524158542631694	CTTCTATGCCAGTGAAG
chr2	65624001	65624002	chr2:65624002:C:T	rs112832799	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr2	65686952	65686953	chr2:65686953:T:A	rs10490612	T	A	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr2	65864344	65864345	chr2:65864345:C:G	rs576608682	C	G	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr2	65864351	65864352	chr2:65864352:T:C	rs2033000	T	C	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr2	65864387	65864388	chr2:65864388:C:T	rs2033001	C	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr2	65911656	65911657	chr2:65911657:A:G	rs719832	A	G	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr2	65923710	65923711	chr2:65923711:C:T	rs17031141	C	T	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	66430669	66430670	chr2:66430670:C:T	rs10200708	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr2	66522477	66522478	chr2:66522478:A:G	rs4430933	A	G	A	Sox3.mouse_HMG_2	7	1	-	4.27033779300145	-1.2325924882413617	CATCAAATACATTGTTG
chr2	66542021	66542022	chr2:66542022:C:T	rs17625742	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr2	66635653	66635654	chr2:66635654:A:G	rs72808818	A	G	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr2	66854374	66854375	chr2:66854375:G:A	rs12713575	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	67384267	67384268	chr2:67384268:T:C	rs1170740761	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.3862611485305454	-4.003020285847344	CATCAATTGCAGCCATA
chr2	67641588	67641589	chr2:67641589:A:G	rs1549783	A	G	A	Sox3.mouse_HMG_2	5	1	+	7.576767081783965	1.187485647406075	CATTAATTTCAGTGACT
chr2	67834211	67834212	chr2:67834212:C:T	rs13007149	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr2	67895096	67895097	chr2:67895097:C:G	rs6546339	C	G	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr2	67995610	67995611	chr2:67995611:C:T	rs10183044	C	T	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr2	68156768	68156769	chr2:68156769:C:T	rs79883557	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr2	68302549	68302550	chr2:68302550:A:G	rs6746740	A	G	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr2	68695052	68695053	chr2:68695053:A:G	rs12474972	A	G	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr2	68733678	68733679	chr2:68733679:C:T	rs72828875	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	68739381	68739382	chr2:68739382:T:A	rs55952990	T	A	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr2	68909030	68909031	chr2:68909031:T:G	rs79143619	T	G	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	68989317	68989318	chr2:68989318:A:G	rs10198493	A	G	G	Sox3.mouse_HMG_2	6	1	-	3.5063195171960584	-2.882961917181831	GATCAATGTATTTGGTT
chr2	68989327	68989328	chr2:68989328:G:T	rs62135595	G	T	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	69128813	69128814	chr2:69128814:G:A	rs75430990	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr2	69176749	69176750	chr2:69176750:G:T	rs34081493	G	T	G	Sox3.mouse_HMG_2	9	1	-	4.732424210085606	-0.5589045069267546	TTTAAATGTCATTGAAC
chr2	69216941	69216942	chr2:69216942:C:G	rs61288293	C	G	C	Sox3.mouse_HMG_2	1	1	+	2.933262042404629	3.642315636729111	TCTCAATTGCAGTTAAA
chr2	69554397	69554398	chr2:69554398:C:A	rs12617329	C	A	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr2	69644508	69644509	chr2:69644509:G:T	rs76498379	G	T	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr2	69689491	69689492	chr2:69689492:A:G	rs12472483	A	G	A	Sox3.mouse_HMG_2	11	1	-	6.520286087083233	-0.16408811237710236	AAGTAATTTTATTGATG
chr2	69708371	69708372	chr2:69708372:G:A	rs72838001	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr2	69739787	69739788	chr2:69739788:C:G	rs546258743	C	G	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr2	69837794	69837795	chr2:69837795:C:A	rs1377996	C	A	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr2	69949410	69949411	chr2:69949411:C:T	rs10165166	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	69999007	69999008	chr2:69999008:G:A	rs4853243	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr2	70294382	70294383	chr2:70294383:G:A	rs12621275	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr2	70294433	70294434	chr2:70294434:T:C	rs17615649	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	70368265	70368266	chr2:70368266:G:C	rs4852172	G	C	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	70726612	70726613	chr2:70726613:C:T	rs1030044	C	T	T	Sox3.mouse_HMG_2	16	1	-	8.018757941040121	7.80718351455487	CATCAAGTTCATTGAAG
chr2	70750517	70750518	chr2:70750518:C:T	rs35164773	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr2	70944020	70944021	chr2:70944021:C:T	rs116357822	C	T	C	Sox3.mouse_HMG_2	1	1	-	1.2912803142233351	3.297668256242793	CGTCCATGCCACTGATA
chr2	71072272	71072273	chr2:71072273:A:T	rs13003421	A	T	.	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr2	71119201	71119202	chr2:71119202:A:G	rs6546677	A	G	.	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr2	71241103	71241104	chr2:71241104:G:A	rs548294388	G	A	g	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr2	71261813	71261814	chr2:71261814:G:T	rs2609505	G	T	G	Sox3.mouse_HMG_2	0	1	+	2.7816107852842284	1.9918422535059324	GGTCAATGGAAGTCATG
chr2	71464473	71464474	chr2:71464474:C:T	rs78130680	C	T	T	Sox3.mouse_HMG_2	11	1	-	4.772160698885093	0.2006765705518075	TATCAACTCCAGTGAGA
chr2	71505286	71505287	chr2:71505287:G:T	rs4346411	G	T	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	71576049	71576050	chr2:71576050:C:T	rs745917	C	T	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	71711057	71711058	chr2:71711058:A:G	rs1896496	A	G	G	Sox3.mouse_HMG_2	10	1	+	5.0822920012681765	-1.826462778047043	CATCAGTGCTATTGTAG
chr2	71893028	71893029	chr2:71893029:A:G	rs17007566	A	G	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr2	72781605	72781606	chr2:72781606:T:C	rs11900751	T	C	T	Sox3.mouse_HMG_2	0	1	-	6.166954283308224	7.863446577010887	ATGCAATTTTATTGAAA
chr2	72846364	72846365	chr2:72846365:A:C	rs4852896	A	C	A	Sox3.mouse_HMG_2	8	1	-	5.658386526619932	4.844748593615719	TATGAATTTCAGTGTTT
chr2	72846507	72846508	chr2:72846508:C:T	rs78506316	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr2	73162775	73162776	chr2:73162776:G:A	rs56293717	G	A	G	Sox3.mouse_HMG_2	10	1	+	1.4038509568057562	8.312605736120977	GGTCAATGATGGTGGAG
chr2	73162787	73162788	chr2:73162788:T:C	rs13413175	T	C	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr2	73384973	73384974	chr2:73384974:C:T	rs12465867	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr2	73707516	73707517	chr2:73707517:G:A	rs78071540	G	A	g	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr2	73882893	73882894	chr2:73882894:A:G	rs10519327	A	G	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr2	73911010	73911011	chr2:73911011:C:T	rs2463120	C	T	C	Sox3.mouse_HMG_2	5	1	-	4.477108140611656	10.866389574989547	ATACAGTGGTATTGATG
chr2	73936803	73936804	chr2:73936804:G:C	rs831528	G	C	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr2	74010770	74010771	chr2:74010771:T:A	rs6546884	T	A	A	Sox3.mouse_HMG_2	11	1	+	6.053568437857991	0.10156213211088128	TGATAATTTTATTGATC
chr2	74689823	74689824	chr2:74689824:A:G	rs189360962	A	G	A	Sox3.mouse_HMG_2	5	1	-	1.5766212607934214	1.5766212607934214	CATCATTGGCACTGAGT
chr2	75134737	75134738	chr2:75134738:T:C	rs3771827	T	C	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr2	75425565	75425566	chr2:75425566:A:C	rs6722285	A	C	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr2	75456646	75456647	chr2:75456647:C:T	rs115284285	C	T	C	Sox3.mouse_HMG_2	1	1	-	3.058025418883006	5.064413360902463	CGTCACTTTCATTGGAT
chr2	75456662	75456663	chr2:75456663:A:C	rs7576567	A	C	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	75475691	75475692	chr2:75475692:C:T	rs115058769	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr2	75672569	75672570	chr2:75672570:A:G	rs77951644	A	G	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr2	76308347	76308348	chr2:76308348:A:C	rs6747727	A	C	A	Sox3.mouse_HMG_2	10	1	+	6.068486250707492	-0.8402685286077274	TTTCAACTTCAGTGATA
chr2	76491637	76491638	chr2:76491638:T:C	rs10175679	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	76491683	76491684	chr2:76491684:A:G	rs114787104	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr2	76598277	76598278	chr2:76598278:C:T	rs1850913	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr2	76599781	76599782	chr2:76599782:C:A	rs72810890	C	A	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr2	76641074	76641075	chr2:76641075:G:A	rs185006672	G	A	G	Sox3.mouse_HMG_2	3	1	-	6.089569217952106	1.2327133427298846	GTACAATGCTATTGCTG
chr2	76641096	76641097	chr2:76641097:A:G	rs79944402	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	76789222	76789223	chr2:76789223:T:G	rs12988164	T	G	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr2	77327411	77327412	chr2:77327412:T:A	rs436974	T	A	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr2	78925795	78925796	chr2:78925796:G:A	rs2861680	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr2	79293200	79293201	chr2:79293201:C:T	rs1434170	C	T	C	Sox3.mouse_HMG_2	0	1	+	2.9904555956423025	2.505320581388194	CATCAATGGTTTTGCAG
chr2	79293223	79293224	chr2:79293224:G:A	rs72818623	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr2	79680153	79680154	chr2:79680154:T:G	rs6547256	T	G	T	Sox3.mouse_HMG_2	15	1	+	3.135147949666892	0.3980208049468665	CATGAATGTTTTTGGTT
chr2	79771690	79771691	chr2:79771691:G:A	rs72912717	G	A	A	Sox3.mouse_HMG_2	1	1	+	3.7040514486460414	5.710439390665498	CGGTAATGCCAGTGATG
chr2	79875181	79875182	chr2:79875182:G:A	rs6707690	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr2	79980366	79980367	chr2:79980367:T:C	rs57637264	T	C	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr2	80128316	80128317	chr2:80128317:A:C	rs72926614	A	C	A	Sox3.mouse_HMG_2	12	1	+	3.5929613829859854	3.5929613829859854	GATCAGTGTTAGAGAAT
chr2	80232175	80232176	chr2:80232176:G:A	rs6719422	G	A	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr2	80531605	80531606	chr2:80531606:A:G	rs62141598	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr2	80586970	80586971	chr2:80586971:C:T	rs12474308	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr2	81692840	81692841	chr2:81692841:C:T	rs7609125	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr2	81903556	81903557	chr2:81903557:A:T	rs57068014	A	T	A	Sox3.mouse_HMG_2	15	1	-	1.7910872067802501	-0.5123024866784346	GCTCATTGCTACTGATG
chr2	82062635	82062636	chr2:82062636:C:T	rs1521686	C	T	C	Sox3.mouse_HMG_2	8	1	-	1.1002324091249749	-0.11855797561952237	CATCAAAGGTGTTGGTG
chr2	82685695	82685696	chr2:82685696:C:T	rs113487444	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	82748811	82748812	chr2:82748812:T:C	rs72934138	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	82811824	82811825	chr2:82811825:A:C	rs185808058	A	C	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	82880084	82880085	chr2:82880085:A:G	rs12470166	A	G	G	Sox3.mouse_HMG_2	12	1	-	4.512719058131024	-1.5382480797997917	TAGGAATGCTAGTGATA
chr2	83007308	83007309	chr2:83007309:A:C	rs62146758	A	C	A	Sox3.mouse_HMG_2	14	1	+	17.01864843580661	10.986119818217968	CATCAATTTCATTGATA
chr2	83115973	83115974	chr2:83115974:A:G	rs115364265	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr2	83116008	83116009	chr2:83116009:A:G	rs72838903	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr2	83168373	83168374	chr2:83168374:A:C	rs17379698	A	C	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr2	83580230	83580231	chr2:83580231:A:T	rs17023713	A	T	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr2	84127027	84127028	chr2:84127028:T:A	rs871721	T	A	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr2	84285972	84285973	chr2:84285973:A:C	chr2:84285973:A:C	A	C	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr2	84716835	84716836	chr2:84716836:A:C	rs116551204	A	C	A	Sox3.mouse_HMG_2	14	1	+	4.086008231113035	-1.9465203864756102	GATTGATGGCATTGAAA
chr2	84899650	84899651	chr2:84899651:G:C	rs6752806	G	C	.	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr2	85111209	85111210	chr2:85111210:A:C	rs79402360	A	C	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr2	85193000	85193001	chr2:85193001:C:T	rs2568210	C	T	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr2	85515173	85515174	chr2:85515174:A:G	rs2886722	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.7159499136516843	-3.968424285808652	GGTCAATTCAATTGGGA
chr2	85668580	85668581	chr2:85668581:C:T	rs3024791	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr2	85850409	85850410	chr2:85850410:C:T	rs114993002	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr2	85916254	85916255	chr2:85916255:T:C	rs73943909	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr2	86217931	86217932	chr2:86217932:G:T	rs112990545	G	T	G	Sox3.mouse_HMG_2	5	1	-	5.111959955501573	12.020035183294631	CTTCACTTTCATTGAAA
chr2	87476707	87476708	chr2:87476708:A:G	rs72938975	A	G	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr2	88003758	88003759	chr2:88003759:G:A	rs4972158	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr2	88054810	88054811	chr2:88054811:T:C	rs11895559	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr2	88094951	88094952	chr2:88094952:G:A	rs2919885	G	A	G	Sox3.mouse_HMG_2	0	1	-	3.6485837925071056	3.163448778252997	CATCAAAGCCCTTGATT
chr2	88096654	88096655	chr2:88096655:T:C	rs2919881	T	C	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr2	88144680	88144681	chr2:88144681:G:A	rs12478496	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	88147744	88147745	chr2:88147745:T:G	rs80324973	T	G	T	Sox3.mouse_HMG_2	10	1	-	4.994789470214282	-1.9139653091009399	CTGCAATGGCAGTGGTG
chr2	88216242	88216243	chr2:88216243:T:C	rs6547762	T	C	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr2	88471137	88471138	chr2:88471138:A:G	rs2015591	A	G	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr2	88628527	88628528	chr2:88628528:A:T	rs78137175	A	T	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	88754531	88754532	chr2:88754532:G:C	rs17037534	G	C	g	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr2	88821843	88821844	chr2:88821844:G:A	rs28493576	G	A	N	Sox3.mouse_HMG_2	13	1	+	2.6094516372149434	-3.442186866971369	TGTCAATCCCAGTGACA
chr2	88843378	88843379	chr2:88843379:A:G	rs2200334	A	G	a	Sox3.mouse_HMG_2	15	1	-	4.333479076796462	0.5536796592906669	AAACAATAATAGTGATG
chr2	88978583	88978584	chr2:88978584:T:C	rs144594870	T	C	.	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr2	89085284	89085285	chr2:89085285:T:G	rs780128588	T	G	.	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr2	89203721	89203722	chr2:89203722:G:A	rs147128848	G	A	.	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr2	89783084	89783085	chr2:89783085:T:C	rs951405152	T	C	.	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr2	89797454	89797455	chr2:89797455:C:T	rs927375809	C	T	.	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr2	89840444	89840445	chr2:89840445:A:G	rs796676857	A	G	.	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr2	89849148	89849149	chr2:89849149:A:G	rs377010215	A	G	.	Sox3.mouse_HMG_2	6	1	-	3.946379528911942	-2.4429019054659484	GATCCATGTAATTGAAA
chr2	90381580	90381581	chr2:90381581:T:A	rs13396470	T	A	.	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	90386083	90386084	chr2:90386084:C:A	rs78626035	C	A	.	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr2	90386094	90386095	chr2:90386095:G:A	rs508068	G	A	.	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr2	90389893	90389894	chr2:90389894:T:A	rs7424330	T	A	.	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr2	90390154	90390155	chr2:90390155:C:A	rs59876081	C	A	.	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr2	90392428	90392429	chr2:90392429:C:A	rs7370785	C	A	.	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr2	91409155	91409156	chr2:91409156:G:C	rs1369269363	G	C	.	Sox3.mouse_HMG_2	3	1	-	4.254443061024429	-1.796076248864868	ATTCAATTCTATTCAAT
chr2	94839318	94839319	chr2:94839319:G:A	rs7588397	G	A	-	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr2	95034518	95034519	chr2:95034519:A:G	chr2:95034519:A:G	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	95314591	95314592	chr2:95314592:A:G	rs889851	A	G	G	Sox3.mouse_HMG_2	1	1	-	3.052311928051275	3.0320939507606295	CTTCAAATCCAGTGAAT
chr2	96515985	96515986	chr2:96515986:C:A	rs116477098	C	A	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	96822976	96822977	chr2:96822977:G:A	rs11886360	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr2	97046802	97046803	chr2:97046803:A:G	rs1257116	A	G	a	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr2	97803070	97803071	chr2:97803071:G:A	rs718159	G	A	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr2	98028417	98028418	chr2:98028418:C:A	rs142038621	C	A	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	98268616	98268617	chr2:98268617:A:G	chr2:98268617:A:G	A	G	a	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr2	98357231	98357232	chr2:98357232:A:G	rs4851127	A	G	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr2	98357283	98357284	chr2:98357284:G:A	rs4851128	G	A	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr2	98654547	98654548	chr2:98654548:C:T	rs2309433	C	T	C	Sox3.mouse_HMG_2	8	1	-	3.5878993515613553	2.369108966816859	AGTAAATGGCATTGTTT
chr2	99125520	99125521	chr2:99125521:T:G	rs1133977	T	G	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr2	99142414	99142415	chr2:99142415:T:C	rs750303200	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr2	99351283	99351284	chr2:99351284:T:C	rs72956312	T	C	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	99390112	99390113	chr2:99390113:A:T	chr2:99390113:A:T	A	T	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr2	99662664	99662665	chr2:99662665:T:G	rs1524366	T	G	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr2	100158582	100158583	chr2:100158583:T:C	rs4851256	T	C	t	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr2	100173444	100173445	chr2:100173445:T:C	rs7593261	T	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	100322870	100322871	chr2:100322871:G:A	rs12999151	G	A	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr2	100360511	100360512	chr2:100360512:C:T	rs76066139	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr2	100556848	100556849	chr2:100556849:C:T	rs2946593	C	T	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	100562346	100562347	chr2:100562347:A:G	rs74337134	A	G	A	Sox3.mouse_HMG_2	4	1	+	4.991261828077496	-1.3980196063003927	CATCATTTTTATTTATT
chr2	100804100	100804101	chr2:100804101:C:T	rs7598317	C	T	T	Sox3.mouse_HMG_2	5	1	+	3.373368957583768	3.373368957583768	TGTCACTTCTAGTGAAA
chr2	101139873	101139874	chr2:101139874:G:A	rs114493084	G	A	G	Sox3.mouse_HMG_2	3	1	-	7.08731125993562	2.2304553847133977	TATCAATGGTGGTGAGT
chr2	101161477	101161478	chr2:101161478:T:C	rs56380439	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	101441765	101441766	chr2:101441766:C:G	rs11123881	C	G	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr2	101652330	101652331	chr2:101652331:G:T	rs61008604	G	T	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr2	101752407	101752408	chr2:101752408:A:G	rs141129206	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr2	102001907	102001908	chr2:102001908:A:G	rs4851526	A	G	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr2	102001933	102001934	chr2:102001934:A:G	rs72990754	A	G	A	Sox3.mouse_HMG_2	8	1	-	2.3320432910942213	1.0776213249385522	GCTGAATGTTAATGAAG
chr2	102080591	102080592	chr2:102080592:C:T	rs4850996	C	T	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr2	102155554	102155555	chr2:102155555:C:T	rs148845730	C	T	C	Sox3.mouse_HMG_2	7	1	-	2.0712343149851256	-4.55758718010293	GACCAATGGGAGTGAGG
chr2	102479976	102479977	chr2:102479977:C:A	rs6543145	C	A	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr2	103138853	103138854	chr2:103138854:G:A	rs13399720	G	A	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr2	103785709	103785710	chr2:103785710:G:A	rs537835772	G	A	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr2	103873002	103873003	chr2:103873003:T:C	rs191790900	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.9197809417414624	-2.4695004926364255	ATTCTATGGTAGTGAAT
chr2	104111427	104111428	chr2:104111428:G:C	rs67772867	G	C	G	Sox3.mouse_HMG_2	13	1	+	4.562404768859819	-1.8248552700673928	ATTCAATGTCATAGTTT
chr2	104428334	104428335	chr2:104428335:A:T	rs12151553	A	T	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr2	104637355	104637356	chr2:104637356:A:C	rs6543262	A	C	C	Sox3.mouse_HMG_2	11	1	-	9.50783014997243	8.127307972558606	CATCAATTGCTTTGATG
chr2	104858800	104858801	chr2:104858801:C:T	rs12996884	C	T	C	Sox3.mouse_HMG_2	0	1	+	3.712321542587493	3.227186528333385	CCTTAATTTTAGTGGAT
chr2	105048836	105048837	chr2:105048837:T:C	rs12611887	T	C	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr2	105080344	105080345	chr2:105080345:A:G	rs12612214	A	G	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr2	105183334	105183335	chr2:105183335:T:C	rs2679850	T	C	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr2	105443445	105443446	chr2:105443446:T:C	rs13025654	T	C	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr2	105546808	105546809	chr2:105546809:G:A	rs144831616	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	105546838	105546839	chr2:105546839:C:T	rs10180130	C	T	C	Sox3.mouse_HMG_2	2	1	-	5.617013045806996	7.48923093670335	TGGCAATGATAGTGAGT
chr2	105568550	105568551	chr2:105568551:A:T	rs6705373	A	T	A	Sox3.mouse_HMG_2	1	1	+	1.181614482617021	-1.5136090764362746	CATCCATGCTATGGGTG
chr2	105580204	105580205	chr2:105580205:T:C	rs4851809	T	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	105698155	105698156	chr2:105698156:A:T	rs1451714	A	T	A	Sox3.mouse_HMG_2	6	1	-	2.6984213855901986	-4.209653842202858	AATTAATGTAAGTGAGG
chr2	105721857	105721858	chr2:105721858:C:T	rs4851087	C	T	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr2	105756711	105756712	chr2:105756712:T:C	rs13028719	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.014104601696161	-1.670269597764175	TATTGATGTTATTGAAG
chr2	105766062	105766063	chr2:105766063:C:A	rs11693509	C	A	A	Sox3.mouse_HMG_2	7	1	-	2.5765880900314877	1.4506968761862415	TAGCAATGTCAGGGAGT
chr2	105766072	105766073	chr2:105766073:A:G	rs11676842	A	G	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr2	105955889	105955890	chr2:105955890:C:T	rs17032047	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr2	106232925	106232926	chr2:106232926:C:T	rs12712247	C	T	c	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr2	106561007	106561008	chr2:106561008:A:G	rs59005995	A	G	a	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr2	106563210	106563211	chr2:106563211:A:G	rs62156079	A	G	a	Sox3.mouse_HMG_2	5	1	+	4.501439672224043	-1.8878417621538475	TTACAATTTCATTGGGA
chr2	106812749	106812750	chr2:106812750:T:C	rs75012206	T	C	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr2	106839401	106839402	chr2:106839402:T:C	rs67385458	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	107082462	107082463	chr2:107082463:A:G	rs560217411	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.946136128469316	0.5568546940914261	GCTCAATTTTATAGAAA
chr2	107281737	107281738	chr2:107281738:C:G	rs7578096	C	G	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr2	107577351	107577352	chr2:107577352:C:A	rs7562778	C	A	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	107779607	107779608	chr2:107779608:A:G	chr2:107779608:A:G	A	G	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr2	108129849	108129850	chr2:108129850:A:G	rs565308553	A	G	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr2	108138195	108138196	chr2:108138196:G:A	rs832671	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr2	108184739	108184740	chr2:108184740:G:A	rs860588	G	A	A	Sox3.mouse_HMG_2	11	1	+	6.747136100675215	2.17565197234193	ACTCAATTTTAGTAATT
chr2	108189168	108189169	chr2:108189169:T:G	rs191343726	T	G	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	108423561	108423562	chr2:108423562:G:A	rs111656651	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr2	108448001	108448002	chr2:108448002:C:T	rs3820960	C	T	-	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr2	108449797	108449798	chr2:108449798:C:T	rs111776505	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr2	108449809	108449810	chr2:108449810:G:T	rs78477242	G	T	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr2	108449831	108449832	chr2:108449832:A:G	rs2460945	A	G	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr2	108450131	108450132	chr2:108450132:T:C	rs189626260	T	C	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr2	108536472	108536473	chr2:108536473:T:C	rs13394465	T	C	T	Sox3.mouse_HMG_2	2	1	+	2.5296567667203274	-3.8372405398054172	GCTCCATGGTATGGATG
chr2	108652367	108652368	chr2:108652368:G:A	rs150201687	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr2	109032258	109032259	chr2:109032259:G:A	rs4676051	G	A	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr2	109132846	109132847	chr2:109132847:G:A	rs6740122	G	A	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	109380429	109380430	chr2:109380430:T:G	rs112507081	T	G	T	Sox3.mouse_HMG_2	11	1	+	5.812830185942385	4.432308008528562	GTGCAATGTTATTGGGT
chr2	109451534	109451535	chr2:109451535:T:G	rs551558452	T	G	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	109610036	109610037	chr2:109610037:C:G	rs6713646	C	G	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr2	109644441	109644442	chr2:109644442:G:T	rs62151702	G	T	G	Sox3.mouse_HMG_2	7	1	+	6.172908686227769	5.047017472382524	TTCCAATGGTATTGAAA
chr2	109644447	109644448	chr2:109644448:G:A	rs56840594	G	A	G	Sox3.mouse_HMG_2	13	1	+	6.172908686227769	0.12127018204145727	TTCCAATGGTATTGAAA
chr2	109671420	109671421	chr2:109671421:C:T	rs35256433	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr2	109700832	109700833	chr2:109700833:A:G	rs4953768	A	G	.	Sox3.mouse_HMG_2	5	1	+	3.284772890522576	-3.104508543855313	AGTCAATGTCATTAGAG
chr2	110170254	110170255	chr2:110170255:C:A	rs566264005	C	A	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr2	110874989	110874990	chr2:110874990:C:T	rs10165663	C	T	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	110882168	110882169	chr2:110882169:T:C	rs116558838	T	C	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	110883725	110883726	chr2:110883726:G:A	rs10186144	G	A	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	111020986	111020987	chr2:111020987:C:T	rs10200225	C	T	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr2	111024433	111024434	chr2:111024434:C:T	rs57698963	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr2	111072440	111072441	chr2:111072441:G:A	rs1837370	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr2	111250138	111250139	chr2:111250139:A:G	rs6727266	A	G	G	Sox3.mouse_HMG_2	11	1	-	10.551055409997662	3.866681210537327	CATTAATTTTATTGAAA
chr2	111512620	111512621	chr2:111512621:T:C	rs11686057	T	C	T	Sox3.mouse_HMG_2	4	1	+	4.503300842446489	4.503300842446489	AAACTATGCCAGTGATT
chr2	111608281	111608282	chr2:111608282:T:C	rs375642853	T	C	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr2	111654478	111654479	chr2:111654479:A:G	rs77325393	A	G	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr2	111660237	111660238	chr2:111660238:C:A	rs4848136	C	A	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr2	112048605	112048606	chr2:112048606:G:A	rs11123109	G	A	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr2	112643193	112643194	chr2:112643194:C:T	rs6705236	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr2	112733373	112733374	chr2:112733374:G:A	rs10187872	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	112777860	112777861	chr2:112777861:C:T	rs2071375	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr2	112839162	112839163	chr2:112839163:C:T	rs80238779	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr2	113005997	113005998	chr2:113005998:A:G	rs895497	A	G	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr2	113029778	113029779	chr2:113029779:G:C	rs4849143	G	C	c	Sox3.mouse_HMG_2	9	1	-	2.9050679912257213	-2.3862607257866393	GATCTTTTGCATTGATG
chr2	113082771	113082772	chr2:113082772:A:G	rs72827886	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	113325768	113325769	chr2:113325769:T:C	rs59766856	T	C	T	Sox3.mouse_HMG_2	15	1	+	0.8511917532852002	-2.928607664220596	CCTCAAAGGCAGCGATT
chr2	113325785	113325786	chr2:113325786:T:C	rs1191695	T	C	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr2	113351801	113351802	chr2:113351802:C:T	rs1867866	C	T	.	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr2	113826912	113826913	chr2:113826913:C:T	rs72948684	C	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr2	113847576	113847577	chr2:113847577:T:C	rs4849293	T	C	T	Sox3.mouse_HMG_2	6	1	+	5.4750291251332195	-0.9142523092446732	AATCATTGCTATTGTTG
chr2	113986939	113986940	chr2:113986940:G:A	rs11694305	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	114071605	114071606	chr2:114071606:A:G	rs75988737	A	G	A	Sox3.mouse_HMG_2	10	1	+	4.250775427898252	-2.657979351416969	CATCAAGTGCATTGGAT
chr2	114373182	114373183	chr2:114373183:T:G	rs4849330	T	G	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	114442375	114442376	chr2:114442376:A:G	rs1272522929	A	G	A	Sox3.mouse_HMG_2	6	1	-	2.920907612882156	-3.4683738214957347	GATCAATTGCAGTCCTG
chr2	115722972	115722973	chr2:115722973:C:T	rs72828542	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	116924585	116924586	chr2:116924586:A:T	rs10211369	A	T	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr2	117056347	117056348	chr2:117056348:C:A	rs12711867	C	A	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr2	117359164	117359165	chr2:117359165:C:A	rs334819	C	A	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	117431415	117431416	chr2:117431416:A:C	chr2:117431416:A:C	A	C	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr2	117727017	117727018	chr2:117727018:C:T	rs17498503	C	T	C	Sox3.mouse_HMG_2	3	1	+	7.659963506486216	2.803107631263995	CAACGATGGCATTGATA
chr2	117731662	117731663	chr2:117731663:C:T	rs36000774	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr2	117812696	117812697	chr2:117812697:G:A	rs17567144	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr2	118256149	118256150	chr2:118256150:C:G	rs115174928	C	G	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr2	118490412	118490413	chr2:118490413:C:G	rs11686428	C	G	-	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr2	118729182	118729183	chr2:118729183:A:G	rs332702	A	G	G	Sox3.mouse_HMG_2	0	1	-	6.455078464962034	6.940213479216142	TGTCATTGCTATTGAAT
chr2	118808982	118808983	chr2:118808983:C:A	rs10191670	C	A	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr2	118842448	118842449	chr2:118842449:C:T	rs184945714	C	T	C	Sox3.mouse_HMG_2	13	1	-	3.456429264985707	-2.5952092392006048	TTTGAATGTCATTGCTT
chr2	119522880	119522881	chr2:119522881:G:A	rs2579617	G	A	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr2	119759960	119759961	chr2:119759961:C:T	rs1018960585	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	119760001	119760002	chr2:119760002:C:T	rs867439834	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	120265163	120265164	chr2:120265164:G:T	rs7587975	G	T	T	Sox3.mouse_HMG_2	11	1	+	6.774198621750218	8.154720799164041	AAGCAATGTCAGTGTTT
chr2	120361344	120361345	chr2:120361345:A:C	rs1548039	A	C	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	120465697	120465698	chr2:120465698:C:T	rs17050160	C	T	C	Sox3.mouse_HMG_2	1	1	-	3.019204031474595	5.025591973494051	TGTCAGTTTTATGGATT
chr2	120712111	120712112	chr2:120712112:C:T	rs12470725	C	T	C	Sox3.mouse_HMG_2	14	1	-	1.520800300165032	4.838866569936633	TGTCACTGTCAGTGGGG
chr2	120836574	120836575	chr2:120836575:C:A	rs970914	C	A	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr2	120901398	120901399	chr2:120901399:G:A	rs1451845360	G	A	G	Sox3.mouse_HMG_2	1	1	+	2.083659435161267	4.090047377180725	CGTCCTTGGCATTGATT
chr2	120936649	120936650	chr2:120936650:T:C	rs11902937	T	C	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	121483360	121483361	chr2:121483361:G:A	rs79158679	G	A	G	Sox3.mouse_HMG_2	11	1	+	2.750458583456396	-1.8210255448768888	TAACCATTGTAGTGAAG
chr2	122081758	122081759	chr2:122081759:A:G	rs908674	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.4437799571953076	-4.240594242265026	GCTAGATGTCATTGATA
chr2	122606450	122606451	chr2:122606451:C:A	rs6541838	C	A	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr2	122868347	122868348	chr2:122868348:A:T	rs17008792	A	T	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr2	123074652	123074653	chr2:123074653:C:A	rs1515166	C	A	A	Sox3.mouse_HMG_2	11	1	-	2.354947693094003	3.7354698705078277	GTGCAATGGCAGAGATA
chr2	123596849	123596850	chr2:123596850:T:C	rs4848872	T	C	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr2	124404213	124404214	chr2:124404214:C:T	rs79611938	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	124542989	124542990	chr2:124542990:T:C	rs6734052	T	C	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr2	124600544	124600545	chr2:124600545:C:T	rs7558706	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr2	124807245	124807246	chr2:124807246:G:T	rs314718	G	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr2	125640919	125640920	chr2:125640920:A:T	rs35806075	A	T	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	126369644	126369645	chr2:126369645:A:G	rs17013755	A	G	A	Sox3.mouse_HMG_2	12	1	-	3.941706595741083	-2.1092605421897335	GAACAATGCCAATGTTA
chr2	126434839	126434840	chr2:126434840:G:C	rs11682818	G	C	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr2	126647935	126647936	chr2:126647936:G:A	rs969684146	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr2	126747753	126747754	chr2:126747754:T:C	rs17014351	T	C	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr2	126801126	126801127	chr2:126801127:C:T	rs6431180	C	T	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr2	126979747	126979748	chr2:126979748:T:G	rs150740926	T	G	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	127059969	127059970	chr2:127059970:C:T	rs880436	C	T	C	Sox3.mouse_HMG_2	1	1	-	2.6543577530587976	4.660745695078253	CGTAAATTTCATTGCTT
chr2	127083760	127083761	chr2:127083761:T:C	rs13426725	T	C	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr2	127453597	127453598	chr2:127453598:A:G	rs13383674	A	G	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr2	128464611	128464612	chr2:128464612:T:C	rs113773226	T	C	T	Sox3.mouse_HMG_2	16	1	-	5.013483100607031	5.225057527092281	AGTCAATGCCAGTGGCA
chr2	128470907	128470908	chr2:128470908:G:A	rs76132922	G	A	G	Sox3.mouse_HMG_2	16	1	+	1.5238662622897345	1.3122918358044837	GATCACTTGCTGTGATG
chr2	128512118	128512119	chr2:128512119:T:C	rs841089	T	C	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr2	128517026	128517027	chr2:128517027:G:A	rs11683275	G	A	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr2	128576853	128576854	chr2:128576854:A:G	rs77944833	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr2	128752662	128752663	chr2:128752663:T:C	rs1316511	T	C	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr2	128782518	128782519	chr2:128782519:T:C	rs7425326	T	C	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr2	128834197	128834198	chr2:128834198:G:A	rs6431034	G	A	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr2	129056248	129056249	chr2:129056249:A:T	rs6725027	A	T	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr2	129170828	129170829	chr2:129170829:A:G	rs2707810	A	G	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr2	129481694	129481695	chr2:129481695:T:C	rs62157324	T	C	T	Sox3.mouse_HMG_2	2	1	-	5.589314627390907	3.7170967364945535	TCACAATGGTAATGATA
chr2	129672659	129672660	chr2:129672660:C:T	rs3109277	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr2	129754408	129754409	chr2:129754409:G:A	rs115113172	G	A	G	Sox3.mouse_HMG_2	16	1	-	3.208967599400405	4.811960649060856	CATCAATTACAGCGGTC
chr2	129885004	129885005	chr2:129885005:T:G	rs10928936	T	G	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	130148793	130148794	chr2:130148794:A:G	rs35796566	A	G	.	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr2	130166959	130166960	chr2:130166960:G:A	rs28404396	G	A	.	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr2	130166972	130166973	chr2:130166973:T:A	rs28473698	T	A	.	Sox3.mouse_HMG_2	5	1	-	9.610371207194515	2.7022959794014567	CTTGAATGTCATTGATG
chr2	130293901	130293902	chr2:130293902:T:G	rs938867	T	G	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr2	130336825	130336826	chr2:130336826:G:A	rs116609847	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.5229761332527127	-3.528662370933599	TTTCAATGTTATCGGGC
chr2	130386724	130386725	chr2:130386725:C:T	rs112503542	C	T	.	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr2	130797014	130797015	chr2:130797015:T:C	rs788182	T	C	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr2	130818647	130818648	chr2:130818648:G:A	rs6749628	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	131465011	131465012	chr2:131465012:C:T	rs181546268	C	T	.	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr2	131714054	131714055	chr2:131714055:C:T	rs4100612	C	T	.	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	131836638	131836639	chr2:131836639:A:T	rs12471911	A	T	a	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	132034984	132034985	chr2:132034985:T:C	rs13026350	T	C	-	Sox3.mouse_HMG_2	1	1	+	6.694188047938793	6.673970070648149	ATTTAATTTCAGTGATA
chr2	133139720	133139721	chr2:133139721:C:T	rs1434227	C	T	T	Sox3.mouse_HMG_2	13	1	-	4.763658350186775	-1.2879801539995368	AATGAATGACAGTGAGG
chr2	133334592	133334593	chr2:133334593:A:C	chr2:133334593:A:C	A	C	A	Sox3.mouse_HMG_2	12	1	-	2.2122482387140567	-4.174340433957659	GGTCAAAGGTAGTGCTG
chr2	133675455	133675456	chr2:133675456:G:A	rs573783785	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr2	133760614	133760615	chr2:133760615:A:G	rs4386376	A	G	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr2	133817301	133817302	chr2:133817302:G:A	rs11695365	G	A	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr2	134072808	134072809	chr2:134072809:C:A	rs16830021	C	A	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr2	134073546	134073547	chr2:134073547:C:A	rs1257370	C	A	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr2	134154542	134154543	chr2:134154543:G:A	rs2139311	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	134257775	134257776	chr2:134257776:A:G	rs1257220	A	G	a	Sox3.mouse_HMG_2	5	1	+	2.9510563798873437	-3.438225054490547	TCTCAATGGTATAGCTG
chr2	134302075	134302076	chr2:134302076:A:G	rs60170956	A	G	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr2	134499363	134499364	chr2:134499364:A:G	rs17787563	A	G	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	135743026	135743027	chr2:135743027:A:T	rs9630957	A	T	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr2	135926740	135926741	chr2:135926741:C:T	rs116190965	C	T	C	Sox3.mouse_HMG_2	0	1	-	3.7166607304067583	2.0201684367040955	GCACAATGTGATTGTTT
chr2	135964032	135964033	chr2:135964033:A:G	rs12615624	A	G	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr2	136236347	136236348	chr2:136236348:A:G	rs10183863	A	G	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	136297810	136297811	chr2:136297811:T:C	rs4325815	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr2	136357266	136357267	chr2:136357267:T:A	rs13003875	T	A	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr2	136927716	136927717	chr2:136927717:A:G	rs1344714	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	136980607	136980608	chr2:136980608:A:C	rs772215871	A	C	A	Sox3.mouse_HMG_2	16	1	-	3.7751951976539564	3.4114735080200105	CATCAATTTCAGCCATT
chr2	137554614	137554615	chr2:137554615:A:G	rs7604024	A	G	G	Sox3.mouse_HMG_2	5	1	+	2.116789324587128	-4.27249210979076	TCCCAATGTGAGTGATG
chr2	137921817	137921818	chr2:137921818:T:C	rs6753975	T	C	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	138087380	138087381	chr2:138087381:A:G	rs10928646	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	138425642	138425643	chr2:138425643:C:G	rs75529043	C	G	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	138448282	138448283	chr2:138448283:C:T	rs4560178	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	138930876	138930877	chr2:138930877:T:C	rs781002270	T	C	T	Sox3.mouse_HMG_2	12	1	-	2.587727261218239	2.25210572647734	CCTCAATGTCAGAGGAG
chr2	139564746	139564747	chr2:139564747:A:G	rs73962726	A	G	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	139864504	139864505	chr2:139864505:A:T	rs116703266	A	T	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr2	140156608	140156609	chr2:140156609:A:T	rs2950614	A	T	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr2	140210738	140210739	chr2:140210739:T:C	rs1008695	T	C	T	Sox3.mouse_HMG_2	9	1	+	4.732327482851531	4.039674939979572	TATCATTGCTATTGCTT
chr2	140270356	140270357	chr2:140270357:A:G	rs3748865	A	G	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr2	140442082	140442083	chr2:140442083:A:T	rs1878742	A	T	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	140539572	140539573	chr2:140539573:A:T	rs13414650	A	T	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr2	140540897	140540898	chr2:140540898:A:C	rs6729619	A	C	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr2	141037699	141037700	chr2:141037700:C:A	rs10186572	C	A	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr2	141322054	141322055	chr2:141322055:A:T	rs111739657	A	T	A	Sox3.mouse_HMG_2	2	1	+	6.531334223606809	9.812990999390346	TAACAGTGACATTGATT
chr2	141556243	141556244	chr2:141556244:G:T	rs1384662	G	T	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr2	141595332	141595333	chr2:141595333:G:A	rs72855461	G	A	G	Sox3.mouse_HMG_2	9	1	-	4.39275972836535	5.08541227123731	ACACAATTACATTGACT
chr2	141728831	141728832	chr2:141728832:A:G	rs2164694	A	G	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr2	141887565	141887566	chr2:141887566:A:G	rs13429414	A	G	A	Sox3.mouse_HMG_2	11	1	-	5.588010752111506	-1.0963634473488302	CTTCAATTTAATTGTTT
chr2	142236758	142236759	chr2:142236759:T:C	rs1446355	T	C	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	142980549	142980550	chr2:142980550:G:A	rs62169913	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	143060148	143060149	chr2:143060149:T:C	rs354690	T	C	T	Sox3.mouse_HMG_2	6	1	+	2.4609730550765967	-3.928308379301293	CATCCATGATAGTGGGA
chr2	143212279	143212280	chr2:143212280:G:A	rs4662316	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	143501973	143501974	chr2:143501974:G:A	rs6760183	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr2	143511835	143511836	chr2:143511836:C:A	rs12691681	C	A	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr2	143668447	143668448	chr2:143668448:G:A	rs555185210	G	A	G	Sox3.mouse_HMG_2	1	1	+	5.5743012133846	7.58068915540406	CGTCAATTGTGGTGATC
chr2	144180270	144180271	chr2:144180271:G:T	rs79034922	G	T	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr2	144824534	144824535	chr2:144824535:G:A	rs12165166	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr2	145356164	145356165	chr2:145356165:G:T	rs961414	G	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr2	145386715	145386716	chr2:145386716:G:A	rs13383375	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr2	145918294	145918295	chr2:145918295:A:C	rs12478954	A	C	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	146244829	146244830	chr2:146244830:C:A	rs2194682	C	A	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr2	146312862	146312863	chr2:146312863:T:G	rs139665567	T	G	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr2	146731080	146731081	chr2:146731081:G:A	rs57003031	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr2	146731118	146731119	chr2:146731119:A:G	rs150885889	A	G	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr2	146755001	146755002	chr2:146755002:C:T	rs9287399	C	T	C	Sox3.mouse_HMG_2	0	1	-	5.727589305635895	4.031097011933231	GATTAATTTTAGAGATA
chr2	146844460	146844461	chr2:146844461:C:A	rs13390839	C	A	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr2	147425097	147425098	chr2:147425098:T:C	rs12624284	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	147570196	147570197	chr2:147570197:T:C	rs12328370	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.442810139996439	-3.9464712943814515	CTTCAATGTTTGTGGAG
chr2	147572723	147572724	chr2:147572724:T:C	rs75674788	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr2	147848036	147848037	chr2:147848037:T:C	rs113176641	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr2	147945740	147945741	chr2:147945741:C:T	rs1531032	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr2	148028211	148028212	chr2:148028212:T:C	rs1234396	T	C	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr2	148094945	148094946	chr2:148094946:C:G	rs6753116	C	G	C	Sox3.mouse_HMG_2	8	1	+	2.669728840224411	3.1105128733758676	TTTCAAAGCTAGTGTTT
chr2	148547627	148547628	chr2:148547628:T:C	rs73005293	T	C	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr2	148680641	148680642	chr2:148680642:G:A	rs6759083	G	A	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr2	149156344	149156345	chr2:149156345:T:A	rs229319	T	A	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr2	149348202	149348203	chr2:149348203:A:G	rs4667438	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.8134742709514287	-2.8708999285089067	TATCCATTTCATTTATT
chr2	149429101	149429102	chr2:149429102:A:G	rs11680806	A	G	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	149704913	149704914	chr2:149704914:T:A	rs10933118	T	A	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	149744402	149744403	chr2:149744403:G:C	rs111349084	G	C	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr2	149768483	149768484	chr2:149768484:G:T	rs79342035	G	T	G	Sox3.mouse_HMG_2	3	1	-	2.912925067389422	-3.987745171869484	GTTCCATGGTATTTATT
chr2	149841421	149841422	chr2:149841422:T:G	rs115957777	T	G	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr2	149974945	149974946	chr2:149974946:G:A	rs1437944	G	A	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr2	150066341	150066342	chr2:150066342:T:C	rs330613	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr2	150191717	150191718	chr2:150191718:A:C	rs79037091	A	C	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr2	150438801	150438802	chr2:150438802:G:C	rs78691076	G	C	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr2	150478794	150478795	chr2:150478795:A:G	rs568390459	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.5719275201494263	-4.112446679310909	CCTAAATGTTATTGGAC
chr2	150526755	150526756	chr2:150526756:T:C	rs574843731	T	C	T	Sox3.mouse_HMG_2	2	1	+	8.433348373525702	2.066451066999956	GATAAATGTTATTGTTG
chr2	150695815	150695816	chr2:150695816:A:T	rs9973439	A	T	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	150735799	150735800	chr2:150735800:G:A	rs16828597	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	151064057	151064058	chr2:151064058:G:A	rs6731235	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr2	151277391	151277392	chr2:151277392:G:A	rs62167157	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	151569177	151569178	chr2:151569178:T:C	rs3732312	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	151733506	151733507	chr2:151733507:A:G	rs4425075	A	G	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr2	152417371	152417372	chr2:152417372:G:C	rs4371310	G	C	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr2	152514956	152514957	chr2:152514957:C:A	rs12612608	C	A	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr2	152558429	152558430	chr2:152558430:A:G	rs10193104	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr2	152867706	152867707	chr2:152867707:G:A	rs9288149	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	153033523	153033524	chr2:153033524:A:T	rs142223648	A	T	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr2	153223327	153223328	chr2:153223328:T:C	rs13021536	T	C	T	Sox3.mouse_HMG_2	1	1	-	12.031953236318442	10.025565294298982	GATCAATTTGATTGATA
chr2	153734056	153734057	chr2:153734057:T:C	rs76841911	T	C	T	Sox3.mouse_HMG_2	11	1	+	4.613491323198095	-2.070882876262241	GTTCTATTTCATTGGTG
chr2	154010525	154010526	chr2:154010526:A:T	rs72868408	A	T	A	Sox3.mouse_HMG_2	4	1	+	3.803554343912107	-3.1045208838809515	CATCAAGGTTATTGGCC
chr2	154062190	154062191	chr2:154062191:G:A	rs10199337	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr2	154138027	154138028	chr2:154138028:T:G	rs1345948	T	G	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr2	154336248	154336249	chr2:154336249:G:C	rs16836567	G	C	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr2	154402378	154402379	chr2:154402379:T:C	rs551618021	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr2	154740984	154740985	chr2:154740985:T:C	rs80336448	T	C	T	Sox3.mouse_HMG_2	14	1	-	3.1395883780876823	-0.17847789168391953	CATTAATTCCAGTTATA
chr2	154760179	154760180	chr2:154760180:T:G	rs2961962	T	G	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr2	154794687	154794688	chr2:154794688:A:T	rs2591154	A	T	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	155452329	155452330	chr2:155452330:T:A	rs1023977	T	A	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	155526889	155526890	chr2:155526890:A:G	rs1524910	A	G	G	Sox3.mouse_HMG_2	0	1	-	4.315984050587577	4.801119064841686	TATCAATGATAATAATA
chr2	155853728	155853729	chr2:155853729:C:T	rs62174791	C	T	C	Sox3.mouse_HMG_2	16	1	-	2.5692558531432708	2.3576814266580204	TGTCATTGTCATTCATG
chr2	156010106	156010107	chr2:156010107:T:C	rs1949991	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	156343732	156343733	chr2:156343733:C:A	rs182093429	C	A	C	Sox3.mouse_HMG_2	16	1	-	3.221073208237108	3.584794897871054	CCTTAATGTTAATGAAG
chr2	156396450	156396451	chr2:156396451:T:C	rs298316	T	C	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr2	156565067	156565068	chr2:156565068:A:G	rs59986751	A	G	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr2	156931751	156931752	chr2:156931752:T:C	rs73013794	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	157019549	157019550	chr2:157019550:A:C	rs73010790	A	C	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr2	157160397	157160398	chr2:157160398:G:A	rs7596456	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr2	157477507	157477508	chr2:157477508:T:C	rs145203333	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	157662092	157662093	chr2:157662093:T:G	rs6736379	T	G	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr2	157782727	157782728	chr2:157782728:T:C	rs10497190	T	C	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr2	157840669	157840670	chr2:157840670:C:T	rs116069638	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr2	158040291	158040292	chr2:158040292:C:T	rs6755190	C	T	T	Sox3.mouse_HMG_2	3	1	+	3.130064282578582	-1.7267915926436412	CCTCAGTTATATTGTTT
chr2	158316139	158316140	chr2:158316140:G:A	rs17808559	G	A	g	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr2	158461043	158461044	chr2:158461044:G:A	rs73966671	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr2	158539447	158539448	chr2:158539448:A:T	rs764336543	A	T	A	Sox3.mouse_HMG_2	4	1	-	2.823772314276061	9.73184754206912	GGACTATTTCATTGAAA
chr2	158560447	158560448	chr2:158560448:A:G	rs72936958	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	158781611	158781612	chr2:158781612:A:C	rs61129598	A	C	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr2	159136327	159136328	chr2:159136328:C:T	rs115827568	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr2	159284938	159284939	chr2:159284939:G:A	rs73968311	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr2	159326859	159326860	chr2:159326860:A:G	rs879707664	A	G	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr2	159449751	159449752	chr2:159449752:C:T	rs4142233	C	T	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	159900421	159900422	chr2:159900422:T:C	rs72957580	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	160037520	160037521	chr2:160037521:G:T	rs74457992	G	T	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr2	160293571	160293572	chr2:160293572:T:C	rs541955400	T	C	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr2	160293608	160293609	chr2:160293609:C:A	rs150718937	C	A	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr2	160373822	160373823	chr2:160373823:A:G	rs76502099	A	G	A	Sox3.mouse_HMG_2	10	1	+	3.175480589766786	-3.733274189548435	CCTTAATTGCATTGCTT
chr2	160461673	160461674	chr2:160461674:C:T	rs147435169	C	T	C	Sox3.mouse_HMG_2	0	1	-	2.0203987969566133	0.3239065032539518	GGTGAGTGGCAGTGATG
chr2	160512627	160512628	chr2:160512628:G:A	rs7589473	G	A	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	160558056	160558057	chr2:160558057:A:G	rs6729743	A	G	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr2	160928911	160928912	chr2:160928912:C:T	rs73971266	C	T	C	Sox3.mouse_HMG_2	6	1	-	4.621649134519004	4.621649134519004	TGTCAAGGTCAGTGGTT
chr2	161115963	161115964	chr2:161115964:C:G	rs183621210	C	G	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr2	161920302	161920303	chr2:161920303:T:G	chr2:161920303:T:G	T	G	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	162007510	162007511	chr2:162007511:T:C	rs904380841	T	C	T	Sox3.mouse_HMG_2	2	1	-	4.347135694330661	2.4749178034343062	AAACAATTTTATTCAAA
chr2	162344896	162344897	chr2:162344897:C:T	rs75779674	C	T	C	Sox3.mouse_HMG_2	3	1	+	8.86190409006478	4.005048214842556	TATCGATGTCAGTGATC
chr2	162587498	162587499	chr2:162587499:C:T	rs1385865	C	T	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr2	163169686	163169687	chr2:163169687:G:A	rs1489636	G	A	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	163452748	163452749	chr2:163452749:T:C	rs12989737	T	C	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr2	163523687	163523688	chr2:163523688:G:A	rs2389932	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr2	164108309	164108310	chr2:164108310:T:C	rs7594255	T	C	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr2	164470759	164470760	chr2:164470760:C:T	rs12464219	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr2	164697791	164697792	chr2:164697792:C:T	rs78970517	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr2	164722780	164722781	chr2:164722781:G:A	rs72878835	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	164843093	164843094	chr2:164843094:C:T	rs3806544	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	165009721	165009722	chr2:165009722:T:G	rs6708616	T	G	G	Sox3.mouse_HMG_2	4	1	-	4.080614870210037	-2.8274603575830195	GTTCAATGTTCTTGCTT
chr2	165170193	165170194	chr2:165170194:G:A	rs11891394	G	A	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr2	165239026	165239027	chr2:165239027:C:G	rs17182714	C	G	C	Sox3.mouse_HMG_2	6	1	-	2.8087725133691346	3.3275663067843015	TGTCAAGCTTATTGATA
chr2	165505897	165505898	chr2:165505898:C:T	rs4667488	C	T	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr2	165640508	165640509	chr2:165640509:G:A	chr2:165640509:G:A	G	A	G	Sox3.mouse_HMG_2	7	1	-	4.728381837764121	10.231312119006935	TATCAATCCTAATGATG
chr2	166084414	166084415	chr2:166084415:T:C	rs487374	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr2	166279519	166279520	chr2:166279520:T:A	rs6739404	T	A	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr2	166499743	166499744	chr2:166499744:A:G	rs12479266	A	G	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr2	166739186	166739187	chr2:166739187:C:G	rs62194550	C	G	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	166996707	166996708	chr2:166996708:T:C	rs116531315	T	C	T	Sox3.mouse_HMG_2	15	1	-	5.9869455427536025	5.5532080914922615	CTACAATTTTATTGTAT
chr2	167181641	167181642	chr2:167181642:G:T	rs6748606	G	T	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr2	167924308	167924309	chr2:167924309:C:T	rs80004484	C	T	C	Sox3.mouse_HMG_2	1	1	+	4.646907651211942	4.667125628502587	GCGCAATGGTATTTATT
chr2	168025945	168025946	chr2:168025946:T:C	rs6717944	T	C	T	Sox3.mouse_HMG_2	6	1	+	2.4091455976952134	-3.9801358366826753	CAGCAATGACATTCAGT
chr2	168114603	168114604	chr2:168114604:C:T	rs1813140	C	T	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr2	168114628	168114629	chr2:168114629:G:A	rs1813141	G	A	A	Sox3.mouse_HMG_2	3	1	-	2.8758266091205424	-1.9810292661016788	GAACCATTGCATTGTTT
chr2	168141890	168141891	chr2:168141891:A:G	rs3769405	A	G	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr2	168222379	168222380	chr2:168222380:T:G	rs1807984	T	G	T	Sox3.mouse_HMG_2	13	1	+	5.313233925872433	11.700493964799646	TATCAATTGCATTTTTA
chr2	168427228	168427229	chr2:168427229:C:A	rs7556702	C	A	C	Sox3.mouse_HMG_2	9	1	+	3.785655734930364	-1.505672982081997	TAGTAATTTCATTGAGA
chr2	168458969	168458970	chr2:168458970:A:G	rs75283930	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr2	168480453	168480454	chr2:168480454:C:T	rs72873085	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr2	168583822	168583823	chr2:168583823:A:G	rs149181346	A	G	A	Sox3.mouse_HMG_2	2	1	-	4.218276298323801	-2.148621008201942	CATTCATTTTATTGAAT
chr2	168693310	168693311	chr2:168693311:A:G	rs62174420	A	G	A	Sox3.mouse_HMG_2	0	1	-	3.3368109411147984	3.821945955368906	TGTTAATTTCTTTGATT
chr2	168847976	168847977	chr2:168847977:T:C	rs560952	T	C	T	Sox3.mouse_HMG_2	15	1	+	2.5179741032259924	-1.2618253142798037	GATTGATGCTAGTGGTT
chr2	168920786	168920787	chr2:168920787:A:G	rs78529720	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	168940506	168940507	chr2:168940507:G:C	chr2:168940507:G:C	G	C	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr2	169069350	169069351	chr2:169069351:A:G	rs2287611	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr2	169210595	169210596	chr2:169210596:A:G	rs116480433	A	G	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr2	169397900	169397901	chr2:169397901:G:A	rs141434288	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	169468936	169468937	chr2:169468937:T:C	rs74946619	T	C	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr2	169620163	169620164	chr2:169620164:A:G	rs72623202	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.050457931637932	-2.6339162678224035	GCTCCATGACATTGGTT
chr2	169620168	169620169	chr2:169620169:A:G	rs76748975	A	G	A	Sox3.mouse_HMG_2	6	1	-	4.050457931637932	-2.3388235027399586	GCTCCATGACATTGGTT
chr2	169628213	169628214	chr2:169628214:A:G	rs4667605	A	G	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr2	169767249	169767250	chr2:169767250:A:G	rs36124041	A	G	A	Sox3.mouse_HMG_2	6	1	-	4.100593434101714	-2.2886880002761756	CTTCTATGACAGTGATC
chr2	169925827	169925828	chr2:169925828:C:T	rs13016918	C	T	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr2	169925845	169925846	chr2:169925846:C:T	rs61092155	C	T	C	Sox3.mouse_HMG_2	2	1	+	6.518076259016487	12.884973565542232	GGCCAATGCCATTGAAA
chr2	170017698	170017699	chr2:170017699:A:T	rs10497355	A	T	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	170020626	170020627	chr2:170020627:T:A	rs60843023	T	A	T	Sox3.mouse_HMG_2	14	1	-	5.1364438763480225	1.1170623525993768	GCTTAATGTCAATGATG
chr2	170073369	170073370	chr2:170073370:G:A	rs10202446	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr2	170255263	170255264	chr2:170255264:C:T	rs1364529	C	T	C	Sox3.mouse_HMG_2	3	1	+	3.4075888412210174	-1.4492670340012035	GTGCAATGTCAGTCATT
chr2	170283151	170283152	chr2:170283152:C:T	rs12612480	C	T	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr2	170322435	170322436	chr2:170322436:A:T	rs766133108	A	T	A	Sox3.mouse_HMG_2	15	1	-	5.081295326512361	2.777905633053677	GATCAATTGCAATAATT
chr2	170431758	170431759	chr2:170431759:A:G	rs17498062	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.8409228429493565	-3.843451356510978	CATCGGTTTTATTGAAG
chr2	170499018	170499019	chr2:170499019:C:T	rs6733235	C	T	T	Sox3.mouse_HMG_2	6	1	+	4.430681641864848	10.819963076242741	TATTAACGGCAGTGATG
chr2	170666312	170666313	chr2:170666313:T:C	rs4643506	T	C	t	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr2	170734840	170734841	chr2:170734841:C:T	rs62169548	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr2	170813499	170813500	chr2:170813500:C:T	rs57026097	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr2	171383652	171383653	chr2:171383653:A:C	rs16859370	A	C	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	172231882	172231883	chr2:172231883:C:T	rs10167005	C	T	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr2	172275526	172275527	chr2:172275527:G:C	rs10193528	G	C	C	Sox3.mouse_HMG_2	8	1	-	4.710834597914264	5.151618631065721	TGTCATTGCTAGTGAAG
chr2	172405435	172405436	chr2:172405436:G:A	rs114982173	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr2	172464592	172464593	chr2:172464593:G:A	rs143192235	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr2	172709601	172709602	chr2:172709602:T:C	rs4395226	T	C	C	Sox3.mouse_HMG_2	2	1	+	3.9582348541644157	-2.4086624523613294	TATCAATTTCAGTTACC
chr2	172709619	172709620	chr2:172709620:A:G	rs28690076	A	G	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr2	172735206	172735207	chr2:172735207:T:G	rs3813813	T	G	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr2	172999094	172999095	chr2:172999095:T:C	rs7603772	T	C	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr2	173101911	173101912	chr2:173101912:G:A	rs76353190	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr2	173288280	173288281	chr2:173288281:C:T	rs11884211	C	T	C	Sox3.mouse_HMG_2	0	1	+	2.8825618464596348	2.397426832205527	CATGAATGGGATTGGTG
chr2	173347943	173347944	chr2:173347944:A:G	rs1560834	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr2	173392945	173392946	chr2:173392946:C:T	rs67304191	C	T	C	Sox3.mouse_HMG_2	11	1	-	4.3687887594787504	-0.20269536885453382	AAACAAGGGCAGTGATA
chr2	173589281	173589282	chr2:173589282:G:C	rs530673	G	C	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr2	174044338	174044339	chr2:174044339:T:A	rs13022446	T	A	T	Sox3.mouse_HMG_2	7	1	+	4.43014950192402	-1.0727807793187918	GATTAAATATATTGATG
chr2	174339026	174339027	chr2:174339027:A:G	rs72915577	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.069589523668685	-2.3196919107092047	GTTAAATGTTATTAATT
chr2	174609441	174609442	chr2:174609442:G:A	rs73026164	G	A	G	Sox3.mouse_HMG_2	14	1	+	4.102630300339589	7.420696570111191	GGACAATGTCAATGGTG
chr2	174749987	174749988	chr2:174749988:G:A	rs2229957	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr2	175070152	175070153	chr2:175070153:T:A	rs1153697	T	A	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	175890465	175890466	chr2:175890466:T:G	rs78426082	T	G	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr2	175948794	175948795	chr2:175948795:A:C	rs57025757	A	C	A	Sox3.mouse_HMG_2	2	1	-	3.741558996747945	-1.4123156699319457	TTTCAATTGCAATGAAC
chr2	176094233	176094234	chr2:176094234:C:T	rs72923425	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	176450471	176450472	chr2:176450472:C:T	rs56180938	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr2	176550003	176550004	chr2:176550004:T:C	rs2922333	T	C	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr2	176730441	176730442	chr2:176730442:A:G	rs77382748	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	176845829	176845830	chr2:176845830:G:A	rs1866132	G	A	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr2	176845834	176845835	chr2:176845835:T:G	rs1866133	T	G	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	177213274	177213275	chr2:177213275:C:T	rs1037658893	C	T	C	Sox3.mouse_HMG_2	0	1	-	5.952232619445514	4.2557403257428525	GATCAATGTCAATGTGG
chr2	177213280	177213281	chr2:177213281:C:T	rs1056235695	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr2	177675483	177675484	chr2:177675484:C:T	rs140269105	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	177746513	177746514	chr2:177746514:A:C	rs749208	A	C	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr2	177933245	177933246	chr2:177933246:T:C	rs10164794	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr2	178089088	178089089	chr2:178089089:C:T	rs56103916	C	T	C	Sox3.mouse_HMG_2	13	1	-	6.696144317246121	0.6445058130598094	CATCAATCGTAGTGGTA
chr2	178193818	178193819	chr2:178193819:C:A	rs959534718	C	A	C	Sox3.mouse_HMG_2	0	1	-	1.6114846944411227	0.821716162662826	GATCAAAGTCAGTCAGT
chr2	178193831	178193832	chr2:178193832:G:A	rs117807540	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr2	178193838	178193839	chr2:178193839:A:G	rs556945300	A	G	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr2	178233563	178233564	chr2:178233564:C:T	rs144070492	C	T	C	Sox3.mouse_HMG_2	0	1	+	3.4154116100584844	2.9302765958043766	CGTCAGTGTCTTTGATT
chr2	178324284	178324285	chr2:178324285:C:T	rs1434083	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr2	178332130	178332131	chr2:178332131:T:C	rs80211690	T	C	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	178556966	178556967	chr2:178556967:A:G	rs9808377	A	G	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr2	178825505	178825506	chr2:178825506:C:T	rs6433735	C	T	T	Sox3.mouse_HMG_2	0	1	+	3.2396337480360837	2.754498733781975	CGACAATGGTAGTTAAT
chr2	178834217	178834218	chr2:178834218:G:A	rs16866554	G	A	G	Sox3.mouse_HMG_2	0	1	-	2.3609942929480012	1.8758592786938926	CGTCTATGTTAGTGTGT
chr2	179410643	179410644	chr2:179410644:T:A	rs13410126	T	A	T	Sox3.mouse_HMG_2	8	1	-	5.278573543074188	7.311001860822897	CATGAATGATATCGATT
chr2	179580290	179580291	chr2:179580291:G:T	rs80300097	G	T	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr2	179744804	179744805	chr2:179744805:C:T	rs79076017	C	T	T	Sox3.mouse_HMG_2	3	1	+	3.7749518154981554	-1.081904059724065	GCACAATGCTATTTAAT
chr2	179874722	179874723	chr2:179874723:C:A	rs1486236	C	A	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr2	180090635	180090636	chr2:180090636:T:C	rs6723904	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.9471533729009978	-2.4421280614768928	AGACAGTGATATTGATG
chr2	180205995	180205996	chr2:180205996:A:T	rs10930896	A	T	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr2	180547703	180547704	chr2:180547704:C:T	rs1490885649	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr2	180633574	180633575	chr2:180633575:C:G	rs4667223	C	G	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr2	181046154	181046155	chr2:181046155:A:C	rs6433883	A	C	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	181129837	181129838	chr2:181129838:C:T	rs74384489	C	T	C	Sox3.mouse_HMG_2	3	1	-	4.918934332268645	4.068783402899035	GAAGAATTTTATTGAGC
chr2	181197339	181197340	chr2:181197340:C:T	rs4233791	C	T	c	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr2	181203925	181203926	chr2:181203926:T:A	rs4667142	T	A	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr2	181486584	181486585	chr2:181486585:C:A	rs155105	C	A	A	Sox3.mouse_HMG_2	1	1	-	2.648910736758087	1.9600751197242476	CGTCAATATCAGTGGGT
chr2	182098178	182098179	chr2:182098179:C:T	rs6748404	C	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr2	182435918	182435919	chr2:182435919:A:G	rs10207132	A	G	A	Sox3.mouse_HMG_2	10	1	+	9.532094618358498	2.6233398390432763	AATCAATGTCAGTAATG
chr2	182452425	182452426	chr2:182452426:C:T	rs6433973	C	T	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr2	182558882	182558883	chr2:182558883:A:G	rs35960621	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr2	182558909	182558910	chr2:182558910:C:T	rs1430156	C	T	T	Sox3.mouse_HMG_2	15	1	+	2.8436103405316047	6.6234097580374005	ATTCAATCTCAGTGACT
chr2	184372014	184372015	chr2:184372015:C:T	rs71430149	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr2	185145993	185145994	chr2:185145994:C:T	rs1483236	C	T	T	Sox3.mouse_HMG_2	11	1	+	2.920913257786924	9.60528745724726	CAACAATTGCACTGGTA
chr2	185578647	185578648	chr2:185578648:A:G	rs34879834	A	G	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr2	185987588	185987589	chr2:185987589:C:T	rs16827364	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	186105342	186105343	chr2:186105343:C:T	rs147312753	C	T	C	Sox3.mouse_HMG_2	16	1	-	2.894008051804562	2.6824336253193115	AAACAATGCTTTTGGTG
chr2	186336584	186336585	chr2:186336585:G:T	rs2044683	G	T	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr2	186347618	186347619	chr2:186347619:T:C	rs183444867	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.514087795454295	-2.875193638923594	ATTCAATTATGGTGATG
chr2	186733193	186733194	chr2:186733194:A:G	rs10165992	A	G	A	Sox3.mouse_HMG_2	6	1	-	9.986663090826234	3.597381656448343	AATCCATTTTATTGATT
chr2	186738340	186738341	chr2:186738341:G:A	rs113166342	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	186863047	186863048	chr2:186863048:C:T	rs115797026	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr2	186863062	186863063	chr2:186863063:T:C	rs10931258	T	C	T	Sox3.mouse_HMG_2	9	1	+	3.336912081762478	2.6442595388905183	CCTGAATGCTATTGGGT
chr2	187391430	187391431	chr2:187391431:G:A	rs3821183	G	A	G	Sox3.mouse_HMG_2	0	1	+	2.312264005211296	0.6157717115086327	GGTCAAGTTAAGTGATT
chr2	187403990	187403991	chr2:187403991:T:G	rs77895136	T	G	T	Sox3.mouse_HMG_2	7	1	+	3.573368176159973	4.699259390005219	AATCCATTTCAGTGAGC
chr2	188078636	188078637	chr2:188078637:T:C	rs66840984	T	C	T	Sox3.mouse_HMG_2	0	1	+	3.774832520418179	4.259967534672287	TGTTAATGTTCGTGATT
chr2	188078657	188078658	chr2:188078658:T:C	rs111242511	T	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr2	188323523	188323524	chr2:188323524:C:T	rs967770444	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	188405629	188405630	chr2:188405630:T:C	rs13427070	T	C	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	188415877	188415878	chr2:188415878:C:G	rs4381754	C	G	C	Sox3.mouse_HMG_2	8	1	+	7.4632851867992684	7.904069219950726	CATTAATTCCATTGTTT
chr2	188415902	188415903	chr2:188415903:A:G	rs4476318	A	G	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr2	188524140	188524141	chr2:188524141:A:G	rs558330372	A	G	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr2	188609053	188609054	chr2:188609054:C:T	rs6434291	C	T	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	188940352	188940353	chr2:188940353:A:G	rs746595467	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	189009804	189009805	chr2:189009805:T:C	rs6715268	T	C	C	Sox3.mouse_HMG_2	15	1	+	2.9841276457207067	-0.7956717717850892	CATCAATCATAGGGATT
chr2	189010968	189010969	chr2:189010969:T:G	rs3768660	T	G	G	Sox3.mouse_HMG_2	14	1	-	6.557346166394222	0.5248175488055775	TATTAATTTTATTTATT
chr2	189105126	189105127	chr2:189105127:A:G	rs10931396	A	G	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr2	189124576	189124577	chr2:189124577:C:T	rs1515869	C	T	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr2	189517204	189517205	chr2:189517205:C:T	rs4417750	C	T	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr2	189613085	189613086	chr2:189613086:A:G	rs13403679	A	G	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	190124298	190124299	chr2:190124299:T:G	rs62186791	T	G	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr2	190197304	190197305	chr2:190197305:C:T	rs11894667	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr2	190283831	190283832	chr2:190283832:G:A	rs2664253	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr2	190506922	190506923	chr2:190506923:G:A	rs8962	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr2	190540237	190540238	chr2:190540238:G:A	rs4853718	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	190867118	190867119	chr2:190867119:A:C	rs114895297	A	C	A	Sox3.mouse_HMG_2	1	1	+	2.241067757909773	-0.47437377843416645	TATCCAATTTAGTGATG
chr2	190981264	190981265	chr2:190981265:C:G	rs3755312	C	G	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr2	191155891	191155892	chr2:191155892:A:C	rs1031507	A	C	C	Sox3.mouse_HMG_2	5	1	+	3.157626308326596	-3.750448919466462	CTTCAAATGCATTGTTT
chr2	191171833	191171834	chr2:191171834:A:T	rs6434448	A	T	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	191304939	191304940	chr2:191304940:A:T	rs116707149	A	T	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr2	191355309	191355310	chr2:191355310:A:G	rs34303459	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	191748728	191748729	chr2:191748729:C:A	rs7584848	C	A	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr2	191812227	191812228	chr2:191812228:G:A	rs555052459	G	A	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr2	191830380	191830381	chr2:191830381:T:C	rs7569546	T	C	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr2	192107802	192107803	chr2:192107803:A:C	rs7557901	A	C	A	Sox3.mouse_HMG_2	7	1	-	8.25786084598901	9.383752059834256	AGTCAATTTTATTGGGA
chr2	192267551	192267552	chr2:192267552:C:T	rs12611645	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	192774853	192774854	chr2:192774854:T:C	rs16834909	T	C	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr2	194270775	194270776	chr2:194270776:T:G	rs28431788	T	G	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr2	196144468	196144469	chr2:196144469:A:C	rs74761880	A	C	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	196161991	196161992	chr2:196161992:T:C	rs1519600	T	C	C	Sox3.mouse_HMG_2	5	1	-	8.75499149679668	2.36571006241879	AAACAATGTGATTGATT
chr2	196165861	196165862	chr2:196165862:T:A	rs16846171	T	A	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr2	196193261	196193262	chr2:196193262:G:C	rs10171929	G	C	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	196225434	196225435	chr2:196225435:A:T	rs16847560	A	T	T	Sox3.mouse_HMG_2	4	1	+	7.123583732553051	0.21550850475999367	CAACAATTCTATTAATA
chr2	196244539	196244540	chr2:196244540:A:G	rs12990533	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.9207587265780774	-2.763615472882258	CAGCCATGTCATTGAGT
chr2	196267271	196267272	chr2:196267272:T:A	rs1125158	T	A	T	Sox3.mouse_HMG_2	12	1	+	5.31574537204253	-0.735221765888286	TAAAAATTTTATTGAAT
chr2	196308091	196308092	chr2:196308092:G:A	rs2305567	G	A	A	Sox3.mouse_HMG_2	7	1	+	3.3235800311420887	-3.3052414639459666	TCTAAATGGCAGTGAGG
chr2	196696527	196696528	chr2:196696528:G:A	rs1114164	G	A	G	Sox3.mouse_HMG_2	3	1	-	2.6933029613989206	-2.1635529138233003	TGTCAAAGTCATTAATA
chr2	196903662	196903663	chr2:196903663:G:A	rs150396935	G	A	G	Sox3.mouse_HMG_2	15	1	-	6.705153428450342	10.484952845956137	TGTCAATGGTATTGTCC
chr2	197075889	197075890	chr2:197075890:A:C	rs137930548	A	C	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr2	197296470	197296471	chr2:197296471:A:G	rs2195510	A	G	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	197297278	197297279	chr2:197297279:T:C	rs7593063	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr2	197521450	197521451	chr2:197521451:C:T	rs9973444	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr2	197847607	197847608	chr2:197847608:G:A	rs700683	G	A	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr2	197924288	197924289	chr2:197924289:T:C	rs12995110	T	C	-	Sox3.mouse_HMG_2	10	1	-	4.135197578877307	-2.7735572004379145	GAACAAAGACATTGAAG
chr2	198053799	198053800	chr2:198053800:C:A	rs57603546	C	A	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr2	198706755	198706756	chr2:198706756:T:C	rs1356486	T	C	t	Sox3.mouse_HMG_2	1	1	-	3.9781941972672814	1.9718062552478226	CATCTAAGCTATTGATG
chr2	198914198	198914199	chr2:198914199:G:C	rs1840751	G	C	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr2	198962747	198962748	chr2:198962748:T:C	rs6714524	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	199136509	199136510	chr2:199136510:G:A	rs4144848	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr2	199229269	199229270	chr2:199229270:A:G	rs28770543	A	G	G	Sox3.mouse_HMG_2	6	1	-	3.842593881692613	-2.5466875526852775	GAACAATGCCAGGGAAA
chr2	199592838	199592839	chr2:199592839:A:G	rs4234081	A	G	G	Sox3.mouse_HMG_2	15	1	-	1.7835678497891858	-1.9962315677166103	CCTCACTGCTATTTATG
chr2	200076873	200076874	chr2:200076874:G:A	rs3115423	G	A	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr2	200192720	200192721	chr2:200192721:G:A	rs62181774	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr2	200239509	200239510	chr2:200239510:A:C	rs1035290526	A	C	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr2	200339970	200339971	chr2:200339971:C:T	rs72918492	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	200454297	200454298	chr2:200454298:G:A	rs3769439	G	A	G	Sox3.mouse_HMG_2	13	1	+	8.323378095911155	2.2717395917248417	TATCAACTACATTGATG
chr2	200656510	200656511	chr2:200656511:C:A	rs2287013	C	A	A	Sox3.mouse_HMG_2	3	1	+	4.43337842416749	-2.4672918150914174	AAACAATTTTAGTGTCT
chr2	200901299	200901300	chr2:200901300:C:G	rs6435066	C	G	G	Sox3.mouse_HMG_2	13	1	-	5.967531452702838	-0.4197285862243744	TGTCAATGCTATGGAGA
chr2	201072349	201072350	chr2:201072350:G:A	rs1485107759	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr2	201573266	201573267	chr2:201573267:T:C	rs12693942	T	C	T	Sox3.mouse_HMG_2	9	1	+	1.9445994879716755	1.2519469450997163	GACCTATGGTAGTGAAT
chr2	201974920	201974921	chr2:201974921:G:A	rs17385923	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr2	202317316	202317317	chr2:202317317:G:A	rs12466003	G	A	G	Sox3.mouse_HMG_2	7	1	+	6.226795979120953	-0.40202551596710423	AGTTAATGCCAGTGATC
chr2	202908180	202908181	chr2:202908181:G:A	rs17637266	G	A	G	Sox3.mouse_HMG_2	14	1	+	2.3815586226780954	5.699624892449696	GAACAATGCCATTAGGT
chr2	203179325	203179326	chr2:203179326:G:A	rs62182250	G	A	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr2	203283123	203283124	chr2:203283124:T:C	rs56324250	T	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr2	203574974	203574975	chr2:203574975:G:A	rs151087518	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr2	203574977	203574978	chr2:203574978:C:T	rs7594831	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	203809263	203809264	chr2:203809264:T:C	rs189492580	T	C	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	203815839	203815840	chr2:203815840:G:T	rs146250240	G	T	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr2	203849167	203849168	chr2:203849168:G:T	rs231811	G	T	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	203869984	203869985	chr2:203869985:A:G	rs758080085	A	G	A	Sox3.mouse_HMG_2	2	1	+	3.7495347906536756	1.8773168997573215	CAACAATGCCAGGGAAG
chr2	203905815	203905816	chr2:203905816:C:T	rs79317438	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	204078519	204078520	chr2:204078520:C:T	rs9678280	C	T	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr2	204078967	204078968	chr2:204078968:G:A	rs78270258	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr2	204086544	204086545	chr2:204086545:G:A	rs961738	G	A	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	204296823	204296824	chr2:204296824:T:A	rs6724362	T	A	a	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr2	204894143	204894144	chr2:204894144:G:A	rs12990232	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr2	204915808	204915809	chr2:204915809:T:C	rs12991340	T	C	C	Sox3.mouse_HMG_2	12	1	+	1.5833060755763098	-4.467661062354506	TTTCATTGTCACTGATG
chr2	205106888	205106889	chr2:205106889:G:A	rs13414808	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr2	205474734	205474735	chr2:205474735:G:A	rs79123751	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	205528088	205528089	chr2:205528089:G:A	rs918055	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	205563503	205563504	chr2:205563504:T:C	rs3919545	T	C	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr2	205698298	205698299	chr2:205698299:G:A	rs849557	G	A	G	Sox3.mouse_HMG_2	1	1	+	2.5457189405235146	4.552106882542971	AGTCAGTGTCATGGATT
chr2	205760541	205760542	chr2:205760542:C:G	rs870068	C	G	C	Sox3.mouse_HMG_2	1	1	-	4.167346038028372	3.4582924437038884	AGTTAATGCTAGTGACA
chr2	206158418	206158419	chr2:206158419:G:C	rs10178430	G	C	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr2	206387910	206387911	chr2:206387911:G:A	rs12052545	G	A	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr2	206737324	206737325	chr2:206737325:G:A	rs4675633	G	A	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr2	206878992	206878993	chr2:206878993:T:C	rs56409875	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr2	207041528	207041529	chr2:207041529:C:G	rs113501212	C	G	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr2	207041545	207041546	chr2:207041546:T:A	rs77932940	T	A	T	Sox3.mouse_HMG_2	14	1	-	3.3429292954494234	-0.6764522282992219	CATCAACTGCACTGATG
chr2	207041554	207041555	chr2:207041555:T:C	rs142343945	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.3429292954494234	-3.0463521389284653	CATCAACTGCACTGATG
chr2	207068175	207068176	chr2:207068176:A:G	rs16824796	A	G	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr2	207399073	207399074	chr2:207399074:T:C	rs4377319	T	C	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr2	207720891	207720892	chr2:207720892:C:A	rs13414402	C	A	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	207729383	207729384	chr2:207729384:A:G	rs13432250	A	G	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr2	208044274	208044275	chr2:208044275:T:A	rs6435404	T	A	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr2	208096699	208096700	chr2:208096700:C:A	rs6713275	C	A	c	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr2	208118813	208118814	chr2:208118814:T:A	rs6435414	T	A	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr2	208129972	208129973	chr2:208129973:C:T	rs2242071	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr2	208353284	208353285	chr2:208353285:A:G	rs34904313	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	208638818	208638819	chr2:208638819:T:G	rs887165143	T	G	T	Sox3.mouse_HMG_2	16	1	-	5.397180743317772	4.369483809776518	CAGTAATTTTATTGAAA
chr2	208719001	208719002	chr2:208719002:G:A	rs7603124	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr2	209069070	209069071	chr2:209069071:T:C	rs4673440	T	C	C	Sox3.mouse_HMG_2	10	1	-	2.8797860287503276	-4.028968750564893	GGTGAATTTCATGGATA
chr2	209321211	209321212	chr2:209321212:C:G	rs13002012	C	G	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr2	209616087	209616088	chr2:209616088:A:G	rs73071071	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr2	209664085	209664086	chr2:209664086:G:A	rs7596811	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	210445505	210445506	chr2:210445506:A:G	rs143933409	A	G	A	Sox3.mouse_HMG_2	16	1	-	9.46369683131617	7.86070378165572	AATGAATTTTAGTGATT
chr2	210445529	210445530	chr2:210445530:T:C	chr2:210445530:T:C	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr2	210956036	210956037	chr2:210956037:A:T	rs319745	A	T	T	Sox3.mouse_HMG_2	10	1	+	5.007106239487314	-1.9016485398279073	AATCAATGTTATATATA
chr2	211437423	211437424	chr2:211437424:G:A	rs17803242	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr2	211720339	211720340	chr2:211720340:G:C	rs6435664	G	C	C	Sox3.mouse_HMG_2	13	1	+	1.734674237702276	-4.652585801224936	GGTCAATGCCTTTGTGG
chr2	211822747	211822748	chr2:211822748:A:G	rs1439247	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.5040673409097445	-3.18030685855059	CCACAGTTATATTGATG
chr2	211822765	211822766	chr2:211822766:G:A	rs16846873	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr2	211822777	211822778	chr2:211822778:A:C	rs67623637	A	C	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	212110513	212110514	chr2:212110514:C:T	rs6435690	C	T	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr2	212136121	212136122	chr2:212136122:C:T	rs113499172	C	T	c	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr2	212322653	212322654	chr2:212322654:T:C	rs7577906	T	C	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr2	212469798	212469799	chr2:212469799:C:T	rs10168850	C	T	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr2	212870583	212870584	chr2:212870584:A:G	rs10460330	A	G	A	Sox3.mouse_HMG_2	1	1	+	5.299615918120539	3.2932279761010803	CATCAATCTTTTTGATA
chr2	212892531	212892532	chr2:212892532:C:T	rs10205723	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr2	213045379	213045380	chr2:213045380:G:A	rs12622499	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	213175322	213175323	chr2:213175323:T:A	rs4673732	T	A	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr2	213187712	213187713	chr2:213187713:A:C	rs56116117	A	C	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr2	213337175	213337176	chr2:213337176:A:C	rs10932479	A	C	a	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr2	213886522	213886523	chr2:213886523:A:T	rs10932508	A	T	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr2	213981288	213981289	chr2:213981289:G:A	rs112543422	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr2	214246446	214246447	chr2:214246447:T:C	rs35945601	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	215062151	215062152	chr2:215062152:G:C	rs35929274	G	C	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr2	215062162	215062163	chr2:215062163:T:A	rs7586353	T	A	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr2	215145859	215145860	chr2:215145860:A:C	rs1004303	A	C	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	215347615	215347616	chr2:215347616:T:C	rs4673993	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr2	215398612	215398613	chr2:215398613:G:A	rs1525352	G	A	-	Sox3.mouse_HMG_2	0	1	+	3.274300260765586	1.5778079670629217	GATCAAGGGGATTGAGT
chr2	215398642	215398643	chr2:215398643:G:A	rs1525351	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr2	215417957	215417958	chr2:215417958:C:A	rs12105173	C	A	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	215430467	215430468	chr2:215430468:T:G	rs7574485	T	G	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr2	215430468	215430469	chr2:215430469:G:T	rs7560554	G	T	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr2	215439311	215439312	chr2:215439312:G:A	rs1250228	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr2	215462639	215462640	chr2:215462640:A:T	rs11678988	A	T	A	Sox3.mouse_HMG_2	9	1	-	5.4726919590671015	-0.5112893008172181	CTTCAATGATCTTGAAT
chr2	215487531	215487532	chr2:215487532:A:T	rs11902239	A	T	t	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr2	215658477	215658478	chr2:215658478:C:G	rs13402978	C	G	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr2	216032415	216032416	chr2:216032416:T:C	rs7600247	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr2	217072329	217072330	chr2:217072330:C:T	rs16856893	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr2	217186976	217186977	chr2:217186977:C:T	rs60729218	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr2	217278337	217278338	chr2:217278338:A:G	rs4674140	A	G	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	217445016	217445017	chr2:217445017:T:G	rs4142171	T	G	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr2	217479323	217479324	chr2:217479324:C:T	rs561625934	C	T	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr2	217535891	217535892	chr2:217535892:C:G	rs4674187	C	G	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr2	217830962	217830963	chr2:217830963:T:C	rs2571440	T	C	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr2	217849962	217849963	chr2:217849963:A:C	rs3791978	A	C	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr2	218050262	218050263	chr2:218050263:C:T	rs10170187	C	T	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr2	218298585	218298586	chr2:218298586:T:C	rs78757285	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr2	218318024	218318025	chr2:218318025:T:C	rs6741757	T	C	T	Sox3.mouse_HMG_2	14	1	-	1.6459177253042758	-1.6721485444673256	AATCACTGGTGGTGATG
chr2	218706024	218706025	chr2:218706025:G:A	rs6751716	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr2	219033003	219033004	chr2:219033004:C:G	rs7572866	C	G	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr2	219309800	219309801	chr2:219309801:A:G	rs6436133	A	G	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr2	219403285	219403286	chr2:219403286:G:T	rs181065590	G	T	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr2	219753088	219753089	chr2:219753089:A:G	rs1834286	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr2	219967913	219967914	chr2:219967914:G:A	rs6706508	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr2	220039951	220039952	chr2:220039952:A:G	rs6436187	A	G	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr2	220062422	220062423	chr2:220062423:G:A	rs730833	G	A	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr2	220154736	220154737	chr2:220154737:G:A	rs10932835	G	A	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr2	220179349	220179350	chr2:220179350:C:T	rs10932836	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	220179376	220179377	chr2:220179377:T:C	rs77568105	T	C	T	Sox3.mouse_HMG_2	5	1	-	7.781048953857021	1.391767519479133	GGCCAATTTCAGTGATG
chr2	220224315	220224316	chr2:220224316:C:T	rs77042353	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr2	220333698	220333699	chr2:220333699:A:G	rs34044598	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.0577568068381105	-0.33152462753978224	GATCAATTCTACTGTTA
chr2	220333993	220333994	chr2:220333994:G:A	rs6737430	G	A	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	220733415	220733416	chr2:220733416:T:C	rs17675314	T	C	T	Sox3.mouse_HMG_2	5	1	-	6.079862092336098	-0.3094193420417933	GGTCAATTTCATTGCCT
chr2	220896398	220896399	chr2:220896399:G:A	rs114710954	G	A	g	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	221202587	221202588	chr2:221202588:T:C	rs1835810	T	C	C	Sox3.mouse_HMG_2	8	1	+	2.814877694748216	1.560455728592546	TATCAAAGTCCTTGATC
chr2	221601045	221601046	chr2:221601046:T:C	rs2680835	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr2	221606795	221606796	chr2:221606796:A:G	rs2680837	A	G	G	Sox3.mouse_HMG_2	6	1	-	9.42213647894086	3.0328550445629694	GGTCTATGTTAGTGATT
chr2	221608910	221608911	chr2:221608911:T:C	rs2710521	T	C	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr2	221608955	221608956	chr2:221608956:G:C	rs2710520	G	C	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr2	221849157	221849158	chr2:221849158:G:A	rs6706361	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr2	222085957	222085958	chr2:222085958:G:A	rs348998	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr2	222432562	222432563	chr2:222432563:A:G	rs4674649	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.4618255748820483	-3.222548624578286	GAGCAATTCGATTGAGT
chr2	222464297	222464298	chr2:222464298:C:T	rs6708243	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr2	222878423	222878424	chr2:222878424:C:T	rs180877038	C	T	C	Sox3.mouse_HMG_2	9	1	+	4.771506024272942	5.464158567144902	CTTTAATGTCATTGCTG
chr2	223076103	223076104	chr2:223076104:T:C	rs192648394	T	C	T	Sox3.mouse_HMG_2	5	1	+	6.409693191157691	6.409693191157691	GCTCATTGTTAGTGAAT
chr2	223518972	223518973	chr2:223518973:A:C	rs1921631	A	C	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	223747630	223747631	chr2:223747631:T:C	rs649569	T	C	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr2	223747635	223747636	chr2:223747636:G:A	rs76924583	G	A	G	Sox3.mouse_HMG_2	1	1	+	8.23855343027136	10.244941372290816	CGTGAATGGTATTGAAT
chr2	224178261	224178262	chr2:224178262:G:T	rs149561806	G	T	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr2	224219855	224219856	chr2:224219856:T:G	rs16865681	T	G	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr2	224223111	224223112	chr2:224223112:G:A	rs6717510	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr2	224294732	224294733	chr2:224294733:T:C	rs17178608	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	224437013	224437014	chr2:224437014:T:G	rs6743392	T	G	G	Sox3.mouse_HMG_2	5	1	-	5.05558096488361	-1.8524942629094476	ACTCAATTTTATGGAGT
chr2	224938465	224938466	chr2:224938466:T:C	rs62187990	T	C	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr2	224938469	224938470	chr2:224938470:C:A	rs62187991	C	A	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	225022426	225022427	chr2:225022427:A:G	rs628042	A	G	A	Sox3.mouse_HMG_2	6	1	-	2.305972402070166	-4.083309032307723	GCCCGATTGTATTGATT
chr2	225028267	225028268	chr2:225028268:T:C	rs281540	T	C	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr2	225087177	225087178	chr2:225087178:C:T	rs4673130	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr2	225272431	225272432	chr2:225272432:A:T	rs60447174	A	T	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	225283362	225283363	chr2:225283363:G:A	rs72966663	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr2	225949185	225949186	chr2:225949186:T:C	rs1589153	T	C	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr2	226214027	226214028	chr2:226214028:C:T	rs1108739	C	T	C	Sox3.mouse_HMG_2	16	1	-	4.717585221204112	4.506010794718861	GAAAAATTCCAGTGATG
chr2	226277321	226277322	chr2:226277322:C:T	rs2713542	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr2	226426551	226426552	chr2:226426552:T:C	rs13398640	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr2	226548946	226548947	chr2:226548947:G:T	rs56960665	G	T	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	226555036	226555037	chr2:226555037:T:C	rs60532138	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.876349797301642	-2.512931637076247	TAACTATGGTAGTGAAG
chr2	226609713	226609714	chr2:226609714:G:T	rs1273810	G	T	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr2	226868768	226868769	chr2:226868769:C:T	rs16822814	C	T	T	Sox3.mouse_HMG_2	0	1	+	4.262693924209869	3.777558909955762	CATAAATGACAGTGACG
chr2	226874748	226874749	chr2:226874749:C:A	rs56234014	C	A	C	Sox3.mouse_HMG_2	3	1	+	2.183130301306708	-4.7175399379522	CATCAGTTCCAGGGATT
chr2	226935488	226935489	chr2:226935489:T:C	rs4675123	T	C	T	Sox3.mouse_HMG_2	7	1	+	2.385655586365171	-3.1172746948776395	GATAAATTATGTTGATG
chr2	226956303	226956304	chr2:226956304:A:T	rs4129886	A	T	A	Sox3.mouse_HMG_2	9	1	-	5.579125416434726	-0.40485584344959363	CATCAATGCTAATAATA
chr2	226956304	226956305	chr2:226956305:G:A	rs142595814	G	A	G	Sox3.mouse_HMG_2	8	1	-	5.579125416434726	6.833547382590394	CATCAATGCTAATAATA
chr2	227000159	227000160	chr2:227000160:A:G	rs10189579	A	G	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	227366228	227366229	chr2:227366229:G:A	rs76547437	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	227370962	227370963	chr2:227370963:T:C	rs201095743	T	C	T	Sox3.mouse_HMG_2	4	1	-	4.1743286770473045	-2.2149527573305874	CAACAATGTCCTTGACA
chr2	227463201	227463202	chr2:227463202:C:T	rs4673199	C	T	T	Sox3.mouse_HMG_2	5	1	+	1.8736133255222358	1.8736133255222358	AGTCACTGGTATTGGGG
chr2	227508239	227508240	chr2:227508240:T:C	rs10182259	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	227579956	227579957	chr2:227579957:C:T	rs12466978	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr2	227697182	227697183	chr2:227697183:T:C	rs111588325	T	C	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr2	227697207	227697208	chr2:227697208:T:C	rs58153586	T	C	T	Sox3.mouse_HMG_2	6	1	+	5.407798340413593	-0.9814830939642963	CAATAATTTCAGTGAAG
chr2	227718186	227718187	chr2:227718187:T:C	rs10498222	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr2	227775457	227775458	chr2:227775458:T:G	rs6759404	T	G	G	Sox3.mouse_HMG_2	1	1	-	2.9297178981073446	0.2142763617634032	GATCATTTGAAGTGATA
chr2	227775473	227775474	chr2:227775474:G:T	rs6744322	G	T	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	227862449	227862450	chr2:227862450:C:T	rs934389009	C	T	C	Sox3.mouse_HMG_2	6	1	-	2.8124055677670223	2.8124055677670223	GGTCAAGGTTATTTATC
chr2	227862891	227862892	chr2:227862892:C:G	rs931764443	C	G	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr2	227882159	227882160	chr2:227882160:T:G	rs4973006	T	G	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr2	228158157	228158158	chr2:228158158:A:G	rs75339037	A	G	A	Sox3.mouse_HMG_2	2	1	-	2.8602948666416768	-3.5066024398840656	GATGAATTTCACTGAAT
chr2	228445370	228445371	chr2:228445371:C:G	rs60799555	C	G	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr2	228613870	228613871	chr2:228613871:T:A	rs2301	T	A	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr2	228818795	228818796	chr2:228818796:T:C	rs2103259	T	C	T	Sox3.mouse_HMG_2	0	1	+	6.095390838757767	6.580525853011875	TGTCAATTTTATTTAGA
chr2	228848046	228848047	chr2:228848047:G:A	rs72983359	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	228875112	228875113	chr2:228875113:G:T	rs11893007	G	T	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr2	228964747	228964748	chr2:228964748:G:A	rs17475282	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr2	229481990	229481991	chr2:229481991:C:A	rs12476610	C	A	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr2	229688011	229688012	chr2:229688012:T:G	rs208788	T	G	G	Sox3.mouse_HMG_2	4	1	-	2.5699864521354345	-4.338088775657623	TTGCAATGGCAGTGGAT
chr2	230170822	230170823	chr2:230170823:C:T	rs140248145	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	230179147	230179148	chr2:230179148:T:G	rs967007	T	G	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr2	230377483	230377484	chr2:230377484:G:A	rs13012615	G	A	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr2	230445904	230445905	chr2:230445905:A:G	rs999888	A	G	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr2	230565668	230565669	chr2:230565669:A:G	rs7587870	A	G	.	Sox3.mouse_HMG_2	9	1	-	2.374495259378418	1.6818427165064584	GCAGAATGGTAGTGAGG
chr2	230599991	230599992	chr2:230599992:G:T	rs74269035	G	T	G	Sox3.mouse_HMG_2	13	1	+	4.479893199726189	-1.9073668392010226	GCTCCATGTCATTGGTC
chr2	230615702	230615703	chr2:230615703:T:C	rs10190300	T	C	t	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	230615707	230615708	chr2:230615708:A:G	rs545406821	A	G	a	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr2	230664193	230664194	chr2:230664194:C:T	rs7426302	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr2	230664194	230664195	chr2:230664195:A:T	rs116050543	A	T	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr2	230664202	230664203	chr2:230664203:C:T	rs138537309	C	T	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr2	230777921	230777922	chr2:230777922:T:C	rs147414467	T	C	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr2	230889690	230889691	chr2:230889691:T:C	rs3906759	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr2	230942920	230942921	chr2:230942921:C:T	rs73093112	C	T	C	Sox3.mouse_HMG_2	0	1	-	2.2918045680636183	0.5953122743609555	GTTCATTGGCAATGATG
chr2	230945431	230945432	chr2:230945432:A:G	rs79579709	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr2	231118235	231118236	chr2:231118236:T:C	rs60707561	T	C	T	Sox3.mouse_HMG_2	9	1	+	3.70690849820316	3.014255955331202	AATAAATGTTAGTGCTT
chr2	231187021	231187022	chr2:231187022:A:T	rs55820201	A	T	A	Sox3.mouse_HMG_2	1	1	+	3.4544646911432553	0.7592411320899568	GATCAATCACTTTGATT
chr2	231330574	231330575	chr2:231330575:A:G	rs1669078	A	G	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr2	231356901	231356902	chr2:231356902:C:T	rs61485321	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr2	231542301	231542302	chr2:231542302:C:T	rs11695846	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr2	231546564	231546565	chr2:231546565:A:G	rs988609665	A	G	A	Sox3.mouse_HMG_2	10	1	+	6.136353004991537	-0.7724017743236848	GGTCAATGTTAATGTTC
chr2	231919860	231919861	chr2:231919861:G:A	rs79612425	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr2	232276666	232276667	chr2:232276667:C:T	rs4640379	C	T	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	232343266	232343267	chr2:232343267:C:G	rs1125045	C	G	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr2	232796135	232796136	chr2:232796136:G:A	rs2305138	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr2	232974528	232974529	chr2:232974529:C:T	rs6748986	C	T	C	Sox3.mouse_HMG_2	7	1	-	2.0421938670763504	-4.586627628011707	GATAAGTGGCATTGAAA
chr2	233249041	233249042	chr2:233249042:C:T	rs56049444	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr2	233297793	233297794	chr2:233297794:T:C	rs73998351	T	C	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr2	233640167	233640168	chr2:233640168:A:G	rs2741034	A	G	A	Sox3.mouse_HMG_2	8	1	-	5.6020698348111075	4.347647868655438	AAACAATTTTAGTGGGA
chr2	233675199	233675200	chr2:233675200:G:A	rs12615708	G	A	g	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr2	233801649	233801650	chr2:233801650:A:G	rs28899491	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.036666939970237	-3.3526144944076517	CACCTATGTTATTGAGG
chr2	233882607	233882608	chr2:233882608:C:G	rs180911177	C	G	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr2	234022654	234022655	chr2:234022655:G:A	rs17865686	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr2	234026507	234026508	chr2:234026508:G:A	rs17864789	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr2	234027784	234027785	chr2:234027785:A:G	rs11682121	A	G	a	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr2	234286460	234286461	chr2:234286461:C:T	rs60884838	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr2	234486570	234486571	chr2:234486571:C:T	rs62184404	C	T	C	Sox3.mouse_HMG_2	0	1	+	4.423517841277406	3.9383828270232977	CATGAATGGCAGTAATT
chr2	234486571	234486572	chr2:234486572:A:C	rs6758801	A	C	A	Sox3.mouse_HMG_2	1	1	+	4.423517841277406	1.708076304933466	CATGAATGGCAGTAATT
chr2	234789076	234789077	chr2:234789077:T:A	rs6431300	T	A	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr2	234994679	234994680	chr2:234994680:G:T	rs115858962	G	T	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr2	235024649	235024650	chr2:235024650:A:G	rs76797541	A	G	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr2	235054618	235054619	chr2:235054619:C:T	rs150313699	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr2	235170040	235170041	chr2:235170041:A:T	rs72981340	A	T	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr2	235170617	235170618	chr2:235170618:G:A	rs4311020	G	A	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr2	235234952	235234953	chr2:235234953:G:T	rs574503527	G	T	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr2	235414545	235414546	chr2:235414546:C:G	rs75514575	C	G	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr2	235674381	235674382	chr2:235674382:G:T	rs12466302	G	T	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr2	235826951	235826952	chr2:235826952:G:A	rs554811255	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr2	235827708	235827709	chr2:235827709:A:T	rs62190882	A	T	A	Sox3.mouse_HMG_2	1	1	-	2.642025694217488	5.3372492532707865	GTTCAATGCCGGTGACG
chr2	235827709	235827710	chr2:235827710:C:T	rs12472411	C	T	T	Sox3.mouse_HMG_2	0	1	-	2.642025694217488	0.9455334005148247	GTTCAATGCCGGTGACG
chr2	235857603	235857604	chr2:235857604:A:G	rs10202922	A	G	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr2	235918724	235918725	chr2:235918725:G:A	rs11690665	G	A	G	Sox3.mouse_HMG_2	7	1	+	2.3930029009229075	-4.235818594165148	GTTAAATGTAAGTGATG
chr2	235936679	235936680	chr2:235936680:T:C	rs979479799	T	C	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr2	236174433	236174434	chr2:236174434:T:C	rs1921660	T	C	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr2	236336400	236336401	chr2:236336401:A:C	rs62192360	A	C	A	Sox3.mouse_HMG_2	9	1	-	4.540874268030169	-1.44310699185415	CATGAATGGTAGTAATA
chr2	236501867	236501868	chr2:236501868:T:C	rs11885826	T	C	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr2	236501908	236501909	chr2:236501909:G:C	rs115373549	G	C	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	236562588	236562589	chr2:236562589:T:C	rs57843509	T	C	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr2	236587546	236587547	chr2:236587547:C:T	rs12692190	C	T	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr2	236592829	236592830	chr2:236592830:G:A	rs573537832	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	236694708	236694709	chr2:236694709:T:C	rs2720136	T	C	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr2	236715727	236715728	chr2:236715728:G:A	chr2:236715728:G:A	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr2	236833628	236833629	chr2:236833629:A:C	rs146693707	A	C	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr2	236861798	236861799	chr2:236861799:T:C	rs7578264	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr2	236941291	236941292	chr2:236941292:T:G	rs531666881	T	G	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr2	236941294	236941295	chr2:236941295:G:A	rs548293008	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr2	236944674	236944675	chr2:236944675:G:A	rs58491621	G	A	G	Sox3.mouse_HMG_2	3	1	-	5.196947973406597	0.3400920981843742	AATCAATGACAGAGAAG
chr2	237144686	237144687	chr2:237144687:G:A	rs72975882	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr2	237235804	237235805	chr2:237235805:A:T	rs13002294	A	T	A	Sox3.mouse_HMG_2	4	1	+	2.217218315908256	-4.6908569118848025	CATCAATGTGAGAGACT
chr2	237235811	237235812	chr2:237235812:G:C	rs13427359	G	C	C	Sox3.mouse_HMG_2	11	1	+	2.217218315908256	-3.086633706138256	CATCAATGTGAGAGACT
chr2	237281860	237281861	chr2:237281861:C:T	rs4328586	C	T	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr2	237281889	237281890	chr2:237281890:A:T	rs4436910	A	T	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr2	237297571	237297572	chr2:237297572:T:C	rs77284338	T	C	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr2	237297584	237297585	chr2:237297585:A:G	rs75929440	A	G	A	Sox3.mouse_HMG_2	15	1	-	0.792103581175443	-2.987695836330353	GCTCCATGGCAGAGATG
chr2	237318892	237318893	chr2:237318893:C:T	rs924209	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr2	237452445	237452446	chr2:237452446:C:T	rs7584314	C	T	C	Sox3.mouse_HMG_2	10	1	+	2.410233290441592	2.410233290441592	GCTCAATGCCCGTGACA
chr2	237452457	237452458	chr2:237452458:G:A	rs75011835	G	A	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr2	237488319	237488320	chr2:237488320:T:C	rs880932	T	C	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr2	237488341	237488342	chr2:237488342:C:T	rs72620830	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr2	237488342	237488343	chr2:237488343:C:T	rs116186581	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr2	237493140	237493141	chr2:237493141:A:G	rs12465081	A	G	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr2	237498322	237498323	chr2:237498323:T:C	rs57319024	T	C	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr2	237732473	237732474	chr2:237732474:C:T	rs56182016	C	T	C	Sox3.mouse_HMG_2	2	1	-	3.372068983437076	5.24428687433343	CAGCAATTAAAGTGATG
chr2	237903521	237903522	chr2:237903522:A:C	rs4663805	A	C	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr2	238142908	238142909	chr2:238142909:T:C	rs935411	T	C	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr2	238142933	238142934	chr2:238142934:G:A	rs76664545	G	A	A	Sox3.mouse_HMG_2	13	1	+	1.2858145830085843	-4.765823921177728	CAGCAAGGCCAGTGAGT
chr2	238213091	238213092	chr2:238213092:T:C	rs4663863	T	C	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr2	238290256	238290257	chr2:238290257:C:T	chr2:238290257:C:T	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.600071414803364	-3.451567089382948	TGTCAATGTCAGAGGAA
chr2	238323751	238323752	chr2:238323752:A:G	rs766308133	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr2	238441845	238441846	chr2:238441846:T:C	rs57080728	T	C	T	Sox3.mouse_HMG_2	6	1	+	1.8262627755911527	-4.563018658786736	GAGCAGTGTGATTGATG
chr2	238732352	238732353	chr2:238732353:A:T	rs4663952	A	T	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr2	238732485	238732486	chr2:238732486:A:G	rs4663953	A	G	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr2	238796761	238796762	chr2:238796762:G:A	rs56987405	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr2	239112308	239112309	chr2:239112309:C:A	rs757570060	C	A	C	Sox3.mouse_HMG_2	10	1	-	2.2411699085082977	2.2411699085082977	ATTCAATGCTGTTGGTC
chr2	239123653	239123654	chr2:239123654:T:C	rs3791446	T	C	C	Sox3.mouse_HMG_2	4	1	-	2.387613401163292	-4.001668033214596	GGTCAAAGGCTTTGATT
chr2	239299995	239299996	chr2:239299996:C:T	rs67432149	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	239300014	239300015	chr2:239300015:A:G	rs115839234	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.4148861893732936	-4.269488010087041	CCTCAGTGGCATGGATT
chr2	239455302	239455303	chr2:239455303:A:C	rs567272355	A	C	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	239455308	239455309	chr2:239455309:A:C	rs35416677	A	C	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr2	239533488	239533489	chr2:239533489:T:A	rs1796446	T	A	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	239533541	239533542	chr2:239533542:A:G	rs2952667	A	G	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr2	239609186	239609187	chr2:239609187:G:T	rs4852097	G	T	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr2	239619568	239619569	chr2:239619569:A:G	rs13034207	A	G	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr2	239748350	239748351	chr2:239748351:G:A	rs1530009	G	A	G	Sox3.mouse_HMG_2	16	1	+	3.9286678068259913	3.717093380340741	GAAGAATGTCAGTGTTG
chr2	239757864	239757865	chr2:239757865:C:T	rs74218169	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr2	239763680	239763681	chr2:239763681:A:G	chr2:239763681:A:G	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.2770567679304	-3.11222466644749	CAGCAATGCCAGCGATC
chr2	239811056	239811057	chr2:239811057:A:G	rs62183198	A	G	A	Sox3.mouse_HMG_2	14	1	+	5.566496907514446	2.2484306377428442	GCTCAATGCCATTTAGG
chr2	239938249	239938250	chr2:239938250:T:C	rs10172732	T	C	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	239938252	239938253	chr2:239938253:A:C	rs10178362	A	C	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr2	239938290	239938291	chr2:239938291:T:G	rs6752251	T	G	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr2	240055798	240055799	chr2:240055799:C:T	rs12471071	C	T	C	Sox3.mouse_HMG_2	3	1	+	4.630758879950576	-0.22609699527164656	GCTCAATGTTAATGGGG
chr2	240156863	240156864	chr2:240156864:C:T	rs34660127	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr2	240198682	240198683	chr2:240198683:A:G	rs73104132	A	G	-	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr2	240525348	240525349	chr2:240525349:G:T	rs4384788	G	T	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr2	240584790	240584791	chr2:240584791:T:C	rs7604368	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr2	240584794	240584795	chr2:240584795:T:C	rs371256016	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr2	240584842	240584843	chr2:240584843:T:C	rs73108040	T	C	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr2	240882063	240882064	chr2:240882064:T:C	rs4312490	T	C	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr2	240882075	240882076	chr2:240882076:C:T	rs12612213	C	T	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr2	240952584	240952585	chr2:240952585:A:C	rs4610049	A	C	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr2	240952591	240952592	chr2:240952592:G:A	rs4605365	G	A	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr2	240972598	240972599	chr2:240972599:T:C	rs11898539	T	C	T	Sox3.mouse_HMG_2	14	1	-	5.4430709187914	2.125004649019798	GGTCAATGTCAGAGACG
chr2	241538985	241538986	chr2:241538986:T:C	rs79995252	T	C	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr2	241575680	241575681	chr2:241575681:T:G	rs6716290	T	G	.	Sox3.mouse_HMG_2	9	1	+	2.7345740198644974	-3.2494072400198193	GGCCAAGTTTATTGATA
chr2	241732210	241732211	chr2:241732211:G:A	rs139023784	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr2	241896378	241896379	chr2:241896379:A:C	rs77365138	A	C	.	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr2	241896390	241896391	chr2:241896391:A:C	rs7606520	A	C	.	Sox3.mouse_HMG_2	5	1	+	3.9073070653770925	-3.0007681624159654	ACTCAAGGGCAGTGATC
chr2	241896400	241896401	chr2:241896401:T:C	rs7600158	T	C	.	Sox3.mouse_HMG_2	15	1	+	3.9073070653770925	0.1275076478712962	ACTCAAGGGCAGTGATC
chr2	241973490	241973491	chr2:241973491:T:C	rs35264288	T	C	.	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr2	242018793	242018794	chr2:242018794:A:G	rs7422022	A	G	.	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr2	242037348	242037349	chr2:242037349:C:T	rs111884257	C	T	.	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr2	242037376	242037377	chr2:242037377:T:C	rs12477174	T	C	.	Sox3.mouse_HMG_2	15	1	+	4.59223039811921	0.8124309806134141	CCTCACTGGTATTGTTG
chr2	242049555	242049556	chr2:242049556:G:A	rs12473443	G	A	.	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr20	145643	145644	chr20:145644:T:C	rs77106211	T	C	.	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr20	648245	648246	chr20:648246:T:C	rs6053666	T	C	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr20	734530	734531	chr20:734531:G:T	rs6133337	G	T	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr20	917574	917575	chr20:917575:T:C	rs540995	T	C	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr20	1042068	1042069	chr20:1042069:C:A	rs6056813	C	A	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr20	1042098	1042099	chr20:1042099:A:G	rs4816166	A	G	A	Sox3.mouse_HMG_2	5	1	-	3.123228205022916	3.123228205022916	ACTCATTGTTAGTGGTA
chr20	1122765	1122766	chr20:1122766:G:A	chr20:1122766:G:A	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr20	1212061	1212062	chr20:1212062:T:C	rs73073619	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr20	1247724	1247725	chr20:1247725:C:T	rs9653633	C	T	C	Sox3.mouse_HMG_2	13	1	-	4.582819423181791	-1.4688190810045214	TTTCAATTTCATAGACT
chr20	1382389	1382390	chr20:1382390:G:C	rs7274574	G	C	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr20	1712968	1712969	chr20:1712969:A:T	rs75794831	A	T	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr20	1875737	1875738	chr20:1875738:C:T	rs79271932	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr20	2045229	2045230	chr20:2045230:A:T	rs1418046	A	T	A	Sox3.mouse_HMG_2	16	1	+	3.909817107643369	4.485113223762565	ACTGAATGATATTGAGA
chr20	2364138	2364139	chr20:2364139:T:G	rs6132554	T	G	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr20	2364142	2364143	chr20:2364143:A:C	rs4815161	A	C	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr20	2364163	2364164	chr20:2364164:G:A	rs2325841	G	A	A	Sox3.mouse_HMG_2	11	1	+	3.6927825070595715	-0.8787016212737137	GTTAAATGCCAGTGAGG
chr20	2421501	2421502	chr20:2421502:G:A	rs11700354	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr20	2533483	2533484	chr20:2533484:G:A	rs6036852	G	A	A	Sox3.mouse_HMG_2	3	1	-	2.590412144469244	-2.2664437307529783	GGACACTGCCAGTGATC
chr20	2533911	2533912	chr20:2533912:G:A	rs6076243	G	A	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr20	2646723	2646724	chr20:2646724:T:C	rs2038246	T	C	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr20	2658905	2658906	chr20:2658906:G:A	rs367817356	G	A	G	Sox3.mouse_HMG_2	7	1	+	3.472029123229561	-3.156792371858497	GGGCAATGTGATTGAGG
chr20	2658923	2658924	chr20:2658924:G:T	rs6037255	G	T	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr20	2771693	2771694	chr20:2771694:G:A	rs6084164	G	A	G	Sox3.mouse_HMG_2	7	1	+	2.1792576555753342	-4.449563839512721	GAGCAGTGCCAGTGAAG
chr20	2885129	2885130	chr20:2885130:G:A	rs1748066	G	A	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr20	3318580	3318581	chr20:3318581:C:A	rs6037547	C	A	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr20	3405679	3405680	chr20:3405680:T:C	rs574701256	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr20	3491323	3491324	chr20:3491324:G:A	rs238722	G	A	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr20	3568717	3568718	chr20:3568718:T:C	rs235564	T	C	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr20	3795527	3795528	chr20:3795528:C:T	rs3761218	C	T	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr20	4057075	4057076	chr20:4057076:G:A	rs1891427	G	A	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr20	4066491	4066492	chr20:4066492:C:T	rs34444919	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr20	4066512	4066513	chr20:4066513:C:G	rs4352290	C	G	G	Sox3.mouse_HMG_2	3	1	+	1.6953446089817357	-4.355174700907559	GAACGATGTCATTGGGC
chr20	4224412	4224413	chr20:4224413:T:C	rs3787441	T	C	T	Sox3.mouse_HMG_2	10	1	-	3.2387103610448102	-3.6700444182704097	GGTCCATGGTATGGATG
chr20	4224424	4224425	chr20:4224425:A:G	rs6084663	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr20	4251727	4251728	chr20:4251728:A:G	rs11698989	A	G	A	Sox3.mouse_HMG_2	6	1	-	5.21174312467694	-1.1775383097009489	CAGCAATTGCATAGATG
chr20	4466090	4466091	chr20:4466091:A:G	rs55828029	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr20	4554435	4554436	chr20:4554436:G:T	rs115489289	G	T	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr20	4681326	4681327	chr20:4681327:G:C	rs145341944	G	C	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr20	4721102	4721103	chr20:4721103:A:C	rs73585009	A	C	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr20	4747237	4747238	chr20:4747238:A:G	rs6052823	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr20	4788530	4788531	chr20:4788531:G:C	rs6139553	G	C	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr20	4788536	4788537	chr20:4788537:G:A	rs2422987	G	A	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr20	5043590	5043591	chr20:5043591:C:T	rs404678	C	T	C	Sox3.mouse_HMG_2	9	1	+	2.9754183603703934	3.6680709032423526	CAGCAATGTCCTTGGTG
chr20	5357976	5357977	chr20:5357977:A:G	rs35963343	A	G	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr20	5357989	5357990	chr20:5357990:T:C	rs4815797	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr20	5660003	5660004	chr20:5660004:C:T	rs111437761	C	T	C	Sox3.mouse_HMG_2	15	1	-	1.0007313974652179	1.434468848726559	CCACCATGGTAGTGAGA
chr20	5694976	5694977	chr20:5694977:C:T	rs73079620	C	T	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr20	5703815	5703816	chr20:5703816:A:G	rs805746	A	G	A	Sox3.mouse_HMG_2	12	1	-	1.8390999778187316	-4.211867160112084	CACCAACTCCAGTGATG
chr20	5739751	5739752	chr20:5739752:T:G	rs35099639	T	G	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr20	5788202	5788203	chr20:5788203:T:A	rs6053694	T	A	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr20	5804036	5804037	chr20:5804037:G:A	rs4813780	G	A	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr20	5831780	5831781	chr20:5831781:A:G	rs237082	A	G	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr20	5849352	5849353	chr20:5849353:A:G	rs185608876	A	G	A	Sox3.mouse_HMG_2	5	1	+	0.6531922743814013	-5.736089159996488	GAGAAATGCCAGTGGTG
chr20	5928918	5928919	chr20:5928919:A:G	rs400735	A	G	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr20	5967580	5967581	chr20:5967581:G:A	rs16991615	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr20	6064676	6064677	chr20:6064677:T:C	rs2326713	T	C	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr20	6077493	6077494	chr20:6077494:C:G	rs113141465	C	G	C	Sox3.mouse_HMG_2	8	1	-	3.6231793319553796	3.1823952988039226	GTTTAATGGAAGTGATG
chr20	6077505	6077506	chr20:6077506:T:C	rs150191129	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr20	6148620	6148621	chr20:6148621:A:C	rs3897510	A	C	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr20	6483975	6483976	chr20:6483976:T:C	rs35281838	T	C	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr20	6533477	6533478	chr20:6533478:C:T	rs118035811	C	T	C	Sox3.mouse_HMG_2	13	1	-	5.417429592905007	-0.6342089112813047	TAAAAATGCCAGTGATT
chr20	6636829	6636830	chr20:6636830:C:T	rs1321433	C	T	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr20	6714678	6714679	chr20:6714679:G:T	chr20:6714679:G:T	G	T	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr20	6745181	6745182	chr20:6745182:T:C	rs6085671	T	C	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr20	6941898	6941899	chr20:6941899:A:G	rs73597168	A	G	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr20	6979897	6979898	chr20:6979898:T:G	rs6085793	T	G	G	Sox3.mouse_HMG_2	6	1	+	3.137270849665353	-3.770804378127704	CATAAATTCCAGTGGTC
chr20	6979922	6979923	chr20:6979923:G:A	rs6038675	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr20	7195708	7195709	chr20:7195709:A:G	rs16993133	A	G	G	Sox3.mouse_HMG_2	2	1	+	4.644250587557895	2.7720326966615403	TAACAATGCCATTCAAG
chr20	7327890	7327891	chr20:7327891:T:C	rs16993414	T	C	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr20	7413253	7413254	chr20:7413254:T:G	rs6054984	T	G	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr20	7463416	7463417	chr20:7463417:C:A	rs2326929	C	A	c	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr20	7477632	7477633	chr20:7477633:A:T	rs6086059	A	T	A	Sox3.mouse_HMG_2	0	1	-	4.08402102893788	3.177297267013514	TTGCAATGTCAGTGGTC
chr20	7691337	7691338	chr20:7691338:C:T	rs6038921	C	T	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr20	7766290	7766291	chr20:7766291:G:A	rs73593977	G	A	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr20	7888808	7888809	chr20:7888809:T:C	rs2294305	T	C	T	Sox3.mouse_HMG_2	10	1	-	6.090850146077806	-0.8179046332374126	TCTCAATTCCACTGATG
chr20	7923930	7923931	chr20:7923931:C:T	rs2247673	C	T	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr20	7945494	7945495	chr20:7945495:A:G	rs2423337	A	G	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr20	8038655	8038656	chr20:8038656:C:T	rs8184867	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr20	8073904	8073905	chr20:8073905:C:T	rs6140524	C	T	C	Sox3.mouse_HMG_2	15	1	-	4.910734484486309	5.34447193574765	CCTGAATGCTAGTGAGG
chr20	8080129	8080130	chr20:8080130:T:C	rs150594378	T	C	T	Sox3.mouse_HMG_2	0	1	+	5.03633768785242	5.521472702106529	TTTGAATTTTATTGTTT
chr20	8212391	8212392	chr20:8212392:C:A	rs6077327	C	A	C	Sox3.mouse_HMG_2	15	1	-	5.281752905753555	8.01888005047358	TGTCAATTGTATTTAGA
chr20	8473558	8473559	chr20:8473559:A:G	rs2294552	A	G	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr20	8510213	8510214	chr20:8510214:A:G	rs16994849	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr20	8528219	8528220	chr20:8528220:A:G	rs114109931	A	G	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr20	8528221	8528222	chr20:8528222:G:A	rs722663	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr20	8536047	8536048	chr20:8536048:C:T	rs2423364	C	T	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr20	8569889	8569890	chr20:8569890:G:A	rs6086505	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr20	8602731	8602732	chr20:8602732:G:T	rs542686766	G	T	G	Sox3.mouse_HMG_2	13	1	+	6.26519293285381	-0.1220671060734025	CTTTAATTACAGTGATG
chr20	8646436	8646437	chr20:8646437:C:A	rs138904904	C	A	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr20	8718828	8718829	chr20:8718829:A:G	rs6056033	A	G	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr20	8781355	8781356	chr20:8781356:C:T	rs6056106	C	T	C	Sox3.mouse_HMG_2	3	1	+	2.201945159748644	-2.6549107154735765	TGTCAATTTTCCTGATT
chr20	8781378	8781379	chr20:8781379:G:A	rs6056107	G	A	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr20	8851593	8851594	chr20:8851594:T:C	rs111933672	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr20	8858621	8858622	chr20:8858622:A:G	rs17380559	A	G	A	Sox3.mouse_HMG_2	10	1	+	0.6815970443875289	-6.227157734927689	GGTCACTTCCACTGATG
chr20	8946085	8946086	chr20:8946086:A:G	rs6118394	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr20	9156776	9156777	chr20:9156777:A:C	rs6118508	A	C	A	Sox3.mouse_HMG_2	5	1	+	8.835063579707702	1.926988351914644	CATTAATTTTATTGTTA
chr20	9229357	9229358	chr20:9229358:A:G	rs73093829	A	G	A	Sox3.mouse_HMG_2	16	1	-	8.41635045392807	6.813357404267619	AATCAATTTTAGTGGCT
chr20	9375848	9375849	chr20:9375849:A:G	rs2299675	A	G	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr20	9573477	9573478	chr20:9573478:T:C	rs2026339	T	C	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr20	9617314	9617315	chr20:9617315:C:T	rs1030493561	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr20	9887886	9887887	chr20:9887887:T:C	rs6056972	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.491811688176557	-1.8974697462013317	CTTCAATTCCATTAAGG
chr20	9928478	9928479	chr20:9928479:C:T	rs6039635	C	T	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr20	9986287	9986288	chr20:9986288:C:T	rs59540965	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr20	10088332	10088333	chr20:10088333:G:A	rs490505	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr20	10214029	10214030	chr20:10214030:G:A	rs8119844	G	A	G	Sox3.mouse_HMG_2	3	1	-	3.777554836091681	-1.0793010391305387	GTGCGATTTTATTGATA
chr20	10429782	10429783	chr20:10429783:A:G	rs6077783	A	G	G	Sox3.mouse_HMG_2	4	1	+	2.8940720753451035	-3.4952093590327857	CTTCAATTCCAGTAGTT
chr20	10453160	10453161	chr20:10453161:A:G	rs4308167	A	G	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr20	10853749	10853750	chr20:10853750:T:C	rs6040200	T	C	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr20	11234115	11234116	chr20:11234116:C:A	rs62191768	C	A	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr20	11247372	11247373	chr20:11247373:C:T	rs4435520	C	T	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr20	11459479	11459480	chr20:11459480:T:C	rs6108988	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.5018459131662296	-2.8874355212116583	TCACAATTCTACTGATG
chr20	11459504	11459505	chr20:11459505:T:C	rs76555679	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr20	11569132	11569133	chr20:11569133:C:A	rs73077852	C	A	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr20	11748647	11748648	chr20:11748648:G:A	rs116408014	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr20	11794730	11794731	chr20:11794731:G:A	rs6033228	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr20	11807455	11807456	chr20:11807456:A:G	rs13039653	A	G	G	Sox3.mouse_HMG_2	5	1	+	1.4745001556799089	-4.91478127869798	CTTCAATGATGGTGGTC
chr20	11929661	11929662	chr20:11929662:T:C	rs1883791	T	C	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr20	12012444	12012445	chr20:12012445:G:A	rs1158499840	G	A	G	Sox3.mouse_HMG_2	13	1	+	7.29822503633956	1.246586532153249	GCTCAATTCCATTGGGA
chr20	12093565	12093566	chr20:12093566:A:G	rs6041087	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr20	12571640	12571641	chr20:12571641:T:A	rs6134596	T	A	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr20	12710223	12710224	chr20:12710224:A:G	rs8122873	A	G	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr20	12717525	12717526	chr20:12717526:A:T	rs6033501	A	T	A	Sox3.mouse_HMG_2	10	1	+	4.975504955850487	-1.9332498234647342	GATCAATGTTATATAAT
chr20	12756395	12756396	chr20:12756396:C:G	rs572038945	C	G	c	Sox3.mouse_HMG_2	5	1	-	1.2667476662104196	0.7479538727952516	GCTCAGTGTCCGTGATG
chr20	12929426	12929427	chr20:12929427:G:A	rs62201676	G	A	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr20	12929593	12929594	chr20:12929594:C:A	rs165555	C	A	C	Sox3.mouse_HMG_2	13	1	-	4.074871809212916	-2.3123882297142955	CAGCAATGGTAGGGATC
chr20	13042143	13042144	chr20:13042144:A:G	rs6033591	A	G	g	Sox3.mouse_HMG_2	14	1	+	3.5156805588961424	0.19761428912454088	TATCAATTTCCCTGATT
chr20	13122029	13122030	chr20:13122030:T:C	rs6074560	T	C	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr20	13212938	13212939	chr20:13212939:C:T	rs17226481	C	T	C	Sox3.mouse_HMG_2	16	1	-	2.4072020088469563	2.195627582361706	CATCAATGCTTGTGGCG
chr20	13212939	13212940	chr20:13212940:G:A	rs6105048	G	A	G	Sox3.mouse_HMG_2	15	1	-	2.4072020088469563	6.187001426352752	CATCAATGCTTGTGGCG
chr20	13273701	13273702	chr20:13273702:G:A	rs80147809	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.1695873055423003	-3.882051198644012	TGTGAATGTTATTGGCC
chr20	13337055	13337056	chr20:13337056:T:A	rs1321293	T	A	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr20	13349266	13349267	chr20:13349267:A:G	rs6079006	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr20	13485254	13485255	chr20:13485255:C:T	rs6109908	C	T	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr20	13506489	13506490	chr20:13506490:T:C	rs6134897	T	C	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr20	13581676	13581677	chr20:13581677:C:A	rs112723315	C	A	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr20	14623062	14623063	chr20:14623063:A:T	rs76283981	A	T	a	Sox3.mouse_HMG_2	6	1	-	2.373396142560599	-4.534679085232459	TATCTATGTTGTTGAGT
chr20	14724423	14724424	chr20:14724424:G:A	rs6074779	G	A	G	Sox3.mouse_HMG_2	8	1	+	1.0758246403868406	-0.14296574435765624	TGTAAATGGTAGGGATG
chr20	14764968	14764969	chr20:14764969:G:A	rs78019035	G	A	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr20	14866487	14866488	chr20:14866488:G:A	rs376176	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr20	15363534	15363535	chr20:15363535:G:A	rs6034164	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr20	15556309	15556310	chr20:15556310:A:G	rs780678169	A	G	A	Sox3.mouse_HMG_2	11	1	-	5.664305589850453	-1.020068609609883	CATCATTTATATTGGTG
chr20	15611731	15611732	chr20:15611732:T:C	rs200742	T	C	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr20	15834873	15834874	chr20:15834874:C:T	rs2191521	C	T	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr20	15882938	15882939	chr20:15882939:A:G	rs6043594	A	G	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr20	15943986	15943987	chr20:15943987:T:C	rs8117004	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr20	16023674	16023675	chr20:16023675:G:A	rs708980	G	A	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr20	16040140	16040141	chr20:16040141:C:T	rs775132	C	T	C	Sox3.mouse_HMG_2	15	1	-	1.6279738907031172	2.0617113419644584	GATGAATGGCAGAGAGG
chr20	16052654	16052655	chr20:16052655:G:A	rs73092737	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr20	16065033	16065034	chr20:16065034:A:G	rs775122	A	G	G	Sox3.mouse_HMG_2	14	1	+	12.818992582152172	9.50092631238057	ATTCAATTTTAGTGATT
chr20	16432993	16432994	chr20:16432994:T:C	rs61664184	T	C	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr20	16761199	16761200	chr20:16761200:A:G	rs78172674	A	G	A	Sox3.mouse_HMG_2	2	1	+	2.874946075910165	1.0027281850138101	CTACAATGGCATTCAAG
chr20	16948098	16948099	chr20:16948099:G:A	rs56406352	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr20	17026452	17026453	chr20:17026453:A:G	rs73237266	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.551774393936811	-1.837507040441077	GATCTATGGCATTTATG
chr20	17091713	17091714	chr20:17091714:C:T	rs7509169	C	T	C	Sox3.mouse_HMG_2	7	1	-	4.947198407818733	-1.6816230872693227	CATAAATGGTATTTATG
chr20	17339411	17339412	chr20:17339412:T:C	rs6075193	T	C	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr20	17371375	17371376	chr20:17371376:A:G	rs62201010	A	G	a	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr20	17403864	17403865	chr20:17403865:A:G	rs186555636	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr20	17465634	17465635	chr20:17465635:C:G	rs74999417	C	G	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr20	17545058	17545059	chr20:17545059:G:A	rs75225013	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr20	17686605	17686606	chr20:17686606:T:A	rs7272098	T	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr20	17807562	17807563	chr20:17807563:G:C	chr20:17807563:G:C	G	C	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr20	17932641	17932642	chr20:17932642:T:C	rs6045109	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr20	18301956	18301957	chr20:18301957:T:C	rs144384599	T	C	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr20	18310757	18310758	chr20:18310758:G:A	rs55896321	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr20	18625672	18625673	chr20:18625673:A:G	rs73112658	A	G	A	Sox3.mouse_HMG_2	5	1	+	8.065598063811105	1.6763166294332166	CCTCAATGCCACTGATT
chr20	18857140	18857141	chr20:18857141:C:T	rs2206875	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr20	19335398	19335399	chr20:19335399:T:G	rs6514992	T	G	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr20	19454135	19454136	chr20:19454136:T:G	rs1023220380	T	G	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr20	19524972	19524973	chr20:19524973:G:A	rs761219	G	A	G	Sox3.mouse_HMG_2	0	1	+	1.480106636249383	-0.21638565745327748	GCTCAATGGTTTTGTCT
chr20	19530470	19530471	chr20:19530471:G:A	rs3790242	G	A	G	Sox3.mouse_HMG_2	0	1	+	1.843571985598373	0.1470796918957113	GCTCAATGGTGGTGGGT
chr20	19673809	19673810	chr20:19673810:A:G	rs1406971	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr20	19690407	19690408	chr20:19690408:A:G	rs1535244	A	G	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr20	19779060	19779061	chr20:19779061:A:G	rs1980588	A	G	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr20	19808777	19808778	chr20:19808778:T:G	rs6035443	T	G	G	Sox3.mouse_HMG_2	5	1	+	1.8603496246930573	2.379143418108226	TGGCATTGCTAGTGATG
chr20	19812117	19812118	chr20:19812118:C:G	rs6136840	C	G	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr20	19812157	19812158	chr20:19812158:A:G	rs6046335	A	G	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr20	19812166	19812167	chr20:19812167:T:C	rs6046336	T	C	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr20	19885160	19885161	chr20:19885161:T:G	rs4813378	T	G	T	Sox3.mouse_HMG_2	8	1	-	4.086979370960404	4.8649857225534445	AAGCAATTATATTGGAT
chr20	19885177	19885178	chr20:19885178:T:G	rs6106148	T	G	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr20	19942355	19942356	chr20:19942356:T:G	rs6112671	T	G	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr20	19981327	19981328	chr20:19981328:A:G	rs199594	A	G	A	Sox3.mouse_HMG_2	12	1	-	12.87267742661869	6.821710288687872	GAACAATTTCAGTGATG
chr20	19981346	19981347	chr20:19981347:C:T	rs199595	C	T	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr20	20078263	20078264	chr20:20078264:C:A	rs11906004	C	A	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr20	20225417	20225418	chr20:20225418:T:G	rs16981717	T	G	T	Sox3.mouse_HMG_2	15	1	+	1.6883346786138045	-1.0487924661062213	CATCATTGGTACTGGTT
chr20	20410199	20410200	chr20:20410200:T:C	rs2067592	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr20	20731778	20731779	chr20:20731779:A:G	chr20:20731779:A:G	A	G	A	Sox3.mouse_HMG_2	16	1	-	1.9751281288572426	0.3721350791967917	GATCAGTTTTCTTGGTT
chr20	20731781	20731782	chr20:20731782:C:T	rs185463639	C	T	C	Sox3.mouse_HMG_2	13	1	-	1.9751281288572426	-4.07651037532907	GATCAGTTTTCTTGGTT
chr20	20780962	20780963	chr20:20780963:G:A	rs6075709	G	A	g	Sox3.mouse_HMG_2	0	1	-	1.5568420417665667	1.071707027512458	CGTCCATGATTTTGATT
chr20	21144025	21144026	chr20:21144026:G:C	rs1884762	G	C	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr20	21290542	21290543	chr20:21290543:C:A	rs140894989	C	A	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr20	21571865	21571866	chr20:21571866:G:A	rs6082455	G	A	G	Sox3.mouse_HMG_2	1	1	-	6.477660927951247	6.497878905241892	GCTCAATTATAGTGGAG
chr20	22486390	22486391	chr20:22486391:T:A	rs8117208	T	A	A	Sox3.mouse_HMG_2	10	1	-	9.076249061413927	2.1674942820987058	TAGCAATTTCATTGAAA
chr20	22563007	22563008	chr20:22563008:T:C	rs1203883	T	C	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr20	22620339	22620340	chr20:22620340:A:C	rs1203946	A	C	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr20	22743609	22743610	chr20:22743610:C:A	rs13044931	C	A	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr20	22743628	22743629	chr20:22743629:A:G	rs73900551	A	G	A	Sox3.mouse_HMG_2	16	1	-	3.095819134721877	1.492826085061426	GTTCAATGGCATTCCTT
chr20	22751757	22751758	chr20:22751758:C:T	rs16984397	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr20	22875361	22875362	chr20:22875362:C:A	rs56325562	C	A	-	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr20	22925111	22925112	chr20:22925112:A:G	rs1411789	A	G	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr20	23028806	23028807	chr20:23028807:G:A	rs220990	G	A	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr20	23049377	23049378	chr20:23049378:C:T	rs1800576	C	T	c	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr20	23337825	23337826	chr20:23337826:G:A	rs6076052	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr20	23442121	23442122	chr20:23442122:G:C	rs73901870	G	C	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr20	23442157	23442158	chr20:23442158:C:T	chr20:23442158:C:T	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr20	23442166	23442167	chr20:23442167:C:T	rs147999788	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr20	23508559	23508560	chr20:23508560:T:C	rs2983303	T	C	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr20	23601385	23601386	chr20:23601386:G:A	rs2983636	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr20	23719781	23719782	chr20:23719782:C:T	rs6083232	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr20	23758866	23758867	chr20:23758867:C:T	rs6083252	C	T	T	Sox3.mouse_HMG_2	13	1	-	2.5982475918924135	-3.4533909122938984	CATCATTTACATTGGGT
chr20	24011529	24011530	chr20:24011530:A:G	rs147318566	A	G	a	Sox3.mouse_HMG_2	11	1	-	3.187777879038953	-3.4965963204213835	CATCAATTACATAGTAT
chr20	24049094	24049095	chr20:24049095:T:G	rs59581206	T	G	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr20	24081313	24081314	chr20:24081314:T:G	rs858141	T	G	G	Sox3.mouse_HMG_2	6	1	-	1.0293039173789542	1.5480977107941212	CCTCAAAGTCAGTGTAG
chr20	24198892	24198893	chr20:24198893:G:A	rs76264801	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr20	24376392	24376393	chr20:24376393:G:A	rs11087464	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr20	24432639	24432640	chr20:24432640:T:C	chr20:24432640:T:C	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr20	24494576	24494577	chr20:24494577:C:T	rs16986675	C	T	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr20	24518084	24518085	chr20:24518085:C:A	rs6049752	C	A	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr20	24608823	24608824	chr20:24608824:A:C	chr20:24608824:A:C	A	C	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr20	24696343	24696344	chr20:24696344:G:A	rs112270330	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr20	24727486	24727487	chr20:24727487:T:C	rs565041722	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr20	24754702	24754703	chr20:24754703:G:T	rs2424667	G	T	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr20	24767202	24767203	chr20:24767203:G:A	rs182661826	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr20	24943622	24943623	chr20:24943623:G:A	rs6050184	G	A	G	Sox3.mouse_HMG_2	6	1	+	1.4412754206372262	1.4412754206372262	GAACAAGGGTTTTGATG
chr20	24964865	24964866	chr20:24964866:G:A	rs74808146	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr20	25030786	25030787	chr20:25030787:T:C	rs6050259	T	C	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr20	25076646	25076647	chr20:25076647:G:C	rs6050302	G	C	G	Sox3.mouse_HMG_2	8	1	-	4.037752220338643	4.4785362534901	GGACAATTCTAGTGGGA
chr20	25127746	25127747	chr20:25127747:A:G	rs4815375	A	G	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr20	25211669	25211670	chr20:25211670:C:T	rs67459375	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr20	25238033	25238034	chr20:25238034:G:A	rs115761750	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr20	25258671	25258672	chr20:25258672:G:C	rs779703081	G	C	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr20	25286086	25286087	chr20:25286087:C:T	rs67184896	C	T	.	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr20	25321516	25321517	chr20:25321517:G:T	rs940259448	G	T	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr20	25378592	25378593	chr20:25378593:G:T	rs4815413	G	T	G	Sox3.mouse_HMG_2	3	1	-	1.0871223794638556	-5.813547859795051	GGTCAATGCCGGTCATT
chr20	25567130	25567131	chr20:25567131:A:G	rs6132845	A	G	A	Sox3.mouse_HMG_2	11	1	-	7.671393624097098	0.9870194246367616	CATCAAAGGTATTGTTT
chr20	25999973	25999974	chr20:25999974:C:T	rs139839080	C	T	.	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr20	28557699	28557700	chr20:28557700:A:T	rs1399571794	A	T	.	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr20	28557707	28557708	chr20:28557708:C:T	rs1171706564	C	T	.	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr20	28558047	28558048	chr20:28558048:C:T	rs1360344829	C	T	.	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr20	28562981	28562982	chr20:28562982:C:T	rs1265811049	C	T	.	Sox3.mouse_HMG_2	1	1	-	8.439399952710419	10.445787894729877	GGTCAATTGTATTGTGA
chr20	28889849	28889850	chr20:28889850:A:C	chr20:28889850:A:C	A	C	.	Sox3.mouse_HMG_2	10	1	+	3.02075735199598	-3.8879974273192413	ACTCCATTCCATTGAAT
chr20	29120592	29120593	chr20:29120593:G:A	rs1327476296	G	A	.	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr20	29298552	29298553	chr20:29298553:G:A	rs1178288185	G	A	.	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr20	29298571	29298572	chr20:29298572:A:G	rs1285674799	A	G	.	Sox3.mouse_HMG_2	10	1	+	1.938310287066706	-4.9704444922485145	CACCAATGGTATTCAAC
chr20	29313058	29313059	chr20:29313059:G:C	rs36159156	G	C	.	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr20	29313084	29313085	chr20:29313085:G:A	rs1412197342	G	A	.	Sox3.mouse_HMG_2	11	1	+	2.291942903301951	-2.2795412250313336	TATAAATTGTAGAGATG
chr20	29876511	29876512	chr20:29876512:G:A	rs1460358818	G	A	.	Sox3.mouse_HMG_2	15	1	-	2.384184784460204	6.163984201966	AGACAATGGCAGTGGCG
chr20	30283508	30283509	chr20:30283509:T:C	rs6567485	T	C	.	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr20	30500619	30500620	chr20:30500620:A:G	rs879022409	A	G	.	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr20	31053898	31053899	chr20:31053899:G:T	rs894772238	G	T	.	Sox3.mouse_HMG_2	8	1	-	3.916521939491037	3.1385155878979965	ATTCAATTCCATTGCAT
chr20	31055242	31055243	chr20:31055243:G:T	rs991441904	G	T	.	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr20	31058787	31058788	chr20:31058788:C:G	rs1310366425	C	G	.	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr20	31058821	31058822	chr20:31058822:A:C	rs1273849235	A	C	.	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr20	31059534	31059535	chr20:31059535:G:C	chr20:31059535:G:C	G	C	.	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr20	31062691	31062692	chr20:31062692:G:A	rs1416128291	G	A	.	Sox3.mouse_HMG_2	1	1	-	6.199693655659075	6.219911632949721	ACTCAATTCCATTGCTT
chr20	31066067	31066068	chr20:31066068:G:C	rs1267108444	G	C	.	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr20	31068315	31068316	chr20:31068316:G:C	chr20:31068316:G:C	G	C	.	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr20	31068327	31068328	chr20:31068328:A:G	chr20:31068328:A:G	A	G	.	Sox3.mouse_HMG_2	6	1	-	3.916521939491037	-2.4727594948868528	ATTCAATTCCATTGCAT
chr20	31068330	31068331	chr20:31068331:G:C	chr20:31068331:G:C	G	C	.	Sox3.mouse_HMG_2	3	1	-	3.916521939491037	-2.13399737039826	ATTCAATTCCATTGCAT
chr20	31069432	31069433	chr20:31069433:T:A	rs908705391	T	A	.	Sox3.mouse_HMG_2	14	1	-	3.8974120528933702	-0.12196947085527504	ATTCAATTCCATTAAAT
chr20	31072106	31072107	chr20:31072107:G:T	rs1330426383	G	T	.	Sox3.mouse_HMG_2	5	1	-	3.4102160420375967	10.318291269830654	TTACACTTGCATTGATT
chr20	31072513	31072514	chr20:31072514:G:T	rs1439122197	G	T	.	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr20	31072527	31072528	chr20:31072528:T:C	rs923527773	T	C	.	Sox3.mouse_HMG_2	10	1	-	6.771903973535521	-0.13685080577969916	TTTCAATTCCATTCATT
chr20	31072557	31072558	chr20:31072558:T:C	rs906444085	T	C	.	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr20	31073738	31073739	chr20:31073739:T:G	rs1273140507	T	G	.	Sox3.mouse_HMG_2	4	1	-	3.8974120528933702	-3.0106631748996864	ATTCAATTCCATTAAAT
chr20	31073744	31073745	chr20:31073745:T:G	rs1341318244	T	G	.	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr20	31073751	31073752	chr20:31073752:C:A	rs1195598144	C	A	.	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr20	31073756	31073757	chr20:31073757:G:C	rs1259927079	G	C	.	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr20	31073812	31073813	chr20:31073813:A:C	rs1045747975	A	C	.	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr20	31073824	31073825	chr20:31073825:G:A	rs1313917420	G	A	.	Sox3.mouse_HMG_2	8	1	-	3.6552897621946823	4.909711728350352	GTTCAATTCCATTCAAC
chr20	31073829	31073830	chr20:31073830:G:C	rs1448166452	G	C	.	Sox3.mouse_HMG_2	3	1	-	3.6552897621946823	-2.395229547694615	GTTCAATTCCATTCAAC
chr20	31075222	31075223	chr20:31075223:C:G	rs943611828	C	G	.	Sox3.mouse_HMG_2	8	1	-	4.357305972642494	3.916521939491037	ATTCAATTGCATTGCAT
chr20	31162289	31162290	chr20:31162290:T:A	rs1459740600	T	A	.	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr20	31164545	31164546	chr20:31164546:G:A	rs879021679	G	A	.	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr20	31186761	31186762	chr20:31186762:G:C	rs1174009560	G	C	.	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr20	31187185	31187186	chr20:31187186:T:C	rs1410202764	T	C	.	Sox3.mouse_HMG_2	8	1	+	3.7580587618398678	2.503636795684198	AATCAATGTGAGTGTAA
chr20	31797753	31797754	chr20:31797754:G:T	rs6119725	G	T	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr20	31855669	31855670	chr20:31855670:C:G	rs4911533	C	G	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr20	31885384	31885385	chr20:31885385:T:C	rs6061015	T	C	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr20	31925931	31925932	chr20:31925932:C:T	rs4911195	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr20	31967042	31967043	chr20:31967043:T:C	rs377432351	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr20	32437427	32437428	chr20:32437428:T:C	rs2295763	T	C	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr20	32771314	32771315	chr20:32771315:G:A	chr20:32771315:G:A	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr20	33203403	33203404	chr20:33203404:A:G	rs112481928	A	G	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr20	33212073	33212074	chr20:33212074:T:A	rs6057760	T	A	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr20	33271966	33271967	chr20:33271967:A:T	rs78206376	A	T	A	Sox3.mouse_HMG_2	15	1	-	4.203544300856596	1.9001546073979112	GCACAATGATTTTGATA
chr20	33569579	33569580	chr20:33569580:T:C	rs905420026	T	C	T	Sox3.mouse_HMG_2	14	1	+	4.395268584840577	2.382121491000577	GATGAATTGTATTGTGA
chr20	33835991	33835992	chr20:33835992:C:T	rs59664976	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr20	33970035	33970036	chr20:33970036:A:G	rs10485503	A	G	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr20	34314559	34314560	chr20:34314560:G:C	rs77301717	G	C	C	Sox3.mouse_HMG_2	3	1	-	2.485280400100497	-3.5652389097888006	GATCAATGGAAGGGAAG
chr20	34314573	34314574	chr20:34314574:T:C	rs73263386	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr20	34633901	34633902	chr20:34633902:G:A	rs192102685	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr20	34843595	34843596	chr20:34843596:A:G	rs192101467	A	G	a	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr20	34922858	34922859	chr20:34922859:A:G	rs6087649	A	G	A	Sox3.mouse_HMG_2	10	1	+	1.777487170385812	-5.1312676089294085	CATCCATTCCATCGATC
chr20	35041001	35041002	chr20:35041002:A:G	rs6060172	A	G	a	Sox3.mouse_HMG_2	5	1	+	3.4396277619797893	-2.9496536723980995	CCTCAATGACAGAGAGG
chr20	35334722	35334723	chr20:35334723:A:G	rs142457045	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.258291508902092	-2.4260826905582435	CATCCATTTTATTGTGG
chr20	35514475	35514476	chr20:35514476:T:G	rs528242926	T	G	T	Sox3.mouse_HMG_2	11	1	+	1.6287229144039856	0.24820073699016104	GGGCAATGTTCTTGTTT
chr20	35547622	35547623	chr20:35547623:G:A	rs79636727	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr20	35616529	35616530	chr20:35616530:G:T	rs115770665	G	T	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr20	35662825	35662826	chr20:35662826:A:C	rs35879157	A	C	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr20	35724406	35724407	chr20:35724407:G:A	rs2425103	G	A	a	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr20	35724423	35724424	chr20:35724424:C:A	rs2425104	C	A	c	Sox3.mouse_HMG_2	16	1	+	3.0173257413363466	4.045022674877601	TATCAATGTTAATAAAC
chr20	36083256	36083257	chr20:36083257:A:G	rs2590990	A	G	G	Sox3.mouse_HMG_2	10	1	+	3.6054570804793884	-3.3032976988358316	TCTCTATTCTATTGGTT
chr20	37220403	37220404	chr20:37220404:G:A	rs111957006	G	A	G	Sox3.mouse_HMG_2	3	1	-	0.909493277615118	-3.9473625976071034	GTCCAATGTCAATGAGG
chr20	37232026	37232027	chr20:37232027:G:A	rs909870	G	A	A	Sox3.mouse_HMG_2	3	1	+	4.537452650145644	3.6873017207760346	TCTGAATGGCAGTGAGT
chr20	37371478	37371479	chr20:37371479:G:A	rs6018100	G	A	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr20	37394389	37394390	chr20:37394390:C:T	rs115528410	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr20	37609255	37609256	chr20:37609256:T:C	rs11697809	T	C	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr20	37734658	37734659	chr20:37734659:G:A	rs115143078	G	A	G	Sox3.mouse_HMG_2	0	1	-	4.128747401082608	3.6436123868285	CTTCAGTGGCAGTGAGA
chr20	37777429	37777430	chr20:37777430:C:G	rs145594973	C	G	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr20	37922083	37922084	chr20:37922084:G:C	rs62201729	G	C	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr20	38158584	38158585	chr20:38158585:A:G	rs2284882	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr20	38168597	38168598	chr20:38168598:C:T	rs761002	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr20	38171232	38171233	chr20:38171233:T:C	rs1053625063	T	C	T	Sox3.mouse_HMG_2	14	1	+	3.19918669287526	1.1860395990352604	AGTCAATTCTATTATTG
chr20	38188172	38188173	chr20:38188173:T:A	rs6069086	T	A	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr20	38275048	38275049	chr20:38275049:T:G	rs77333306	T	G	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr20	38527643	38527644	chr20:38527644:G:A	rs805558	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr20	38707011	38707012	chr20:38707012:A:G	rs77796797	A	G	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr20	39157443	39157444	chr20:39157444:C:T	rs6124115	C	T	C	Sox3.mouse_HMG_2	4	1	+	2.750830915772998	2.750830915772998	GACCCATGCCAGTGATG
chr20	39432725	39432726	chr20:39432726:T:G	rs8122510	T	G	G	Sox3.mouse_HMG_2	14	1	-	3.2069104215788573	-2.825618196009788	ACTCCATGGCAGTGAAT
chr20	39738956	39738957	chr20:39738957:A:G	rs11906928	A	G	A	Sox3.mouse_HMG_2	0	1	-	4.119016485877472	4.60415150013158	TGTCAATGTTATATATG
chr20	39849990	39849991	chr20:39849991:C:T	rs143652643	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr20	39850013	39850014	chr20:39850014:C:T	rs148097573	C	T	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr20	40265909	40265910	chr20:40265910:A:G	rs6028999	A	G	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr20	40266145	40266146	chr20:40266146:A:G	rs6071994	A	G	G	Sox3.mouse_HMG_2	3	1	-	12.159482426038135	17.016338301260358	CATTAATGATATTGATG
chr20	40317260	40317261	chr20:40317261:C:T	rs73609334	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr20	40336091	40336092	chr20:40336092:C:T	rs73609355	C	T	C	Sox3.mouse_HMG_2	11	1	-	3.2123637099274247	-1.3591204184058594	TGAGAATTGCAGTGATG
chr20	40753088	40753089	chr20:40753089:C:T	rs17834206	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr20	40991003	40991004	chr20:40991004:C:T	rs4812477	C	T	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr20	41048073	41048074	chr20:41048074:A:T	rs79507025	A	T	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr20	41185283	41185284	chr20:41185284:G:A	rs140175465	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr20	41318121	41318122	chr20:41318122:C:G	chr20:41318122:C:G	C	G	C	Sox3.mouse_HMG_2	3	1	+	1.8774980190286263	-4.173021290860669	CTCCAATTCCAGTGTTT
chr20	41335250	41335251	chr20:41335251:C:T	rs370714147	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr20	41335269	41335270	chr20:41335270:C:G	rs563862578	C	G	C	Sox3.mouse_HMG_2	11	1	-	0.9372434995038015	-4.366608522542709	CAGCCATGTCAGTGAGC
chr20	41615297	41615298	chr20:41615298:A:C	rs7263463	A	C	A	Sox3.mouse_HMG_2	0	1	+	2.9658967323791856	4.357755508557663	AATCAATGCTAGTTCTT
chr20	41660143	41660144	chr20:41660144:A:C	rs6016595	A	C	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr20	41891333	41891334	chr20:41891334:T:G	rs6093531	T	G	T	Sox3.mouse_HMG_2	14	1	-	3.80476043306442	-2.2277681845242254	CAACAATGATATTCAAC
chr20	42285265	42285266	chr20:42285266:T:C	rs79606907	T	C	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr20	42442184	42442185	chr20:42442185:C:A	rs187683710	C	A	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr20	42576972	42576973	chr20:42576973:T:C	rs75450710	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr20	43449108	43449109	chr20:43449109:G:A	chr20:43449109:G:A	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr20	43591389	43591390	chr20:43591390:T:C	rs562281872	T	C	T	Sox3.mouse_HMG_2	12	1	+	4.243123427374703	-1.8078437105561134	TGGTAATGTTATTGAAG
chr20	43660796	43660797	chr20:43660797:A:C	rs138996689	A	C	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr20	43821830	43821831	chr20:43821831:A:G	rs6093885	A	G	A	Sox3.mouse_HMG_2	5	1	+	12.778480646517707	6.389199212139816	GTTCAATGGCATTGAGT
chr20	44052170	44052171	chr20:44052171:G:C	rs6031328	G	C	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr20	44129600	44129601	chr20:44129601:G:A	rs761210	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr20	44184546	44184547	chr20:44184547:C:T	rs6065708	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr20	44216672	44216673	chr20:44216673:G:C	rs6031461	G	C	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr20	44356714	44356715	chr20:44356715:A:G	rs6031546	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr20	44359200	44359201	chr20:44359201:T:C	rs17755638	T	C	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr20	44410303	44410304	chr20:44410304:C:A	rs3212192	C	A	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr20	44427508	44427509	chr20:44427509:G:T	rs6031598	G	T	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr20	44495916	44495917	chr20:44495917:G:A	rs144649935	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr20	44522245	44522246	chr20:44522246:A:G	rs2425644	A	G	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr20	44664486	44664487	chr20:44664487:G:C	rs75076579	G	C	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr20	44777134	44777135	chr20:44777135:G:C	rs140327843	G	C	G	Sox3.mouse_HMG_2	1	1	+	3.53240391203276	2.823350317708279	AGTCGATGTCAGTGTTT
chr20	44914940	44914941	chr20:44914941:A:G	rs6130713	A	G	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr20	45028638	45028639	chr20:45028639:G:A	rs6073607	G	A	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr20	45128160	45128161	chr20:45128161:T:C	rs6104024	T	C	T	Sox3.mouse_HMG_2	1	1	-	3.8560830440026934	1.8496951019832333	CATCAATACTATTGGCA
chr20	45306296	45306297	chr20:45306297:T:C	rs2233085	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr20	45635550	45635551	chr20:45635551:G:A	rs6017637	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr20	45817171	45817172	chr20:45817172:T:C	rs188681934	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr20	46299375	46299376	chr20:46299376:A:G	rs73301988	A	G	a	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr20	46431414	46431415	chr20:46431415:T:C	rs619714	T	C	t	Sox3.mouse_HMG_2	1	1	-	1.792457017509024	-0.213930924510434	TATCATTGTTTTTGGTT
chr20	46636265	46636266	chr20:46636266:A:G	rs6122514	A	G	A	Sox3.mouse_HMG_2	2	1	-	0.9834839568992818	-5.383413349626463	GATCTATAGTATTGTTG
chr20	46703692	46703693	chr20:46703693:T:C	rs112143500	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr20	46760998	46760999	chr20:46760999:C:A	rs4810554	C	A	A	Sox3.mouse_HMG_2	0	1	-	5.657734465783799	4.867965934005502	GGATAATGGTATTGAGG
chr20	46763597	46763598	chr20:46763598:T:C	rs6094465	T	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr20	46769635	46769636	chr20:46769636:T:C	rs3091430	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr20	46810735	46810736	chr20:46810736:C:A	rs6094487	C	A	C	Sox3.mouse_HMG_2	14	1	+	2.2214834882253554	8.254012105813999	GCACAATTTTATTGCGC
chr20	46840450	46840451	chr20:46840451:A:G	rs3092038	A	G	A	Sox3.mouse_HMG_2	5	1	+	1.7990869972603225	-4.590194437117567	CAACCATGACAGTGGTT
chr20	46893462	46893463	chr20:46893463:G:A	rs6063031	G	A	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr20	46953703	46953704	chr20:46953704:A:G	rs11696503	A	G	a	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr20	47118484	47118485	chr20:47118485:C:G	rs6122555	C	G	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr20	47384300	47384301	chr20:47384301:T:A	rs534454508	T	A	t	Sox3.mouse_HMG_2	14	1	-	7.57981064049478	3.560429116746135	TTTCCATGTTAGTGATG
chr20	47384321	47384322	chr20:47384322:T:C	rs547104118	T	C	t	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr20	47681181	47681182	chr20:47681182:G:A	rs73913415	G	A	G	Sox3.mouse_HMG_2	9	1	-	4.806646371174959	5.499298914046919	TTACAATGCCATTGGAA
chr20	47863202	47863203	chr20:47863203:C:T	rs5002650	C	T	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr20	47963423	47963424	chr20:47963424:T:C	rs6018817	T	C	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr20	47963424	47963425	chr20:47963425:G:A	rs6012307	G	A	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr20	47963564	47963565	chr20:47963565:T:C	rs4372968	T	C	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr20	48018365	48018366	chr20:48018366:C:A	rs12481385	C	A	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr20	48234964	48234965	chr20:48234965:G:A	rs707518	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr20	48245133	48245134	chr20:48245134:C:G	rs60884881	C	G	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr20	48262498	48262499	chr20:48262499:T:C	rs226810	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr20	48404039	48404040	chr20:48404040:C:T	rs1555580	C	T	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr20	48437518	48437519	chr20:48437519:C:T	rs1321006	C	T	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr20	48516488	48516489	chr20:48516489:C:G	rs1432580513	C	G	-	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr20	48516495	48516496	chr20:48516496:A:G	rs1192938584	A	G	-	Sox3.mouse_HMG_2	5	1	+	1.3641247645486465	-5.0251566698292445	CTTCAATGGCAGCAATG
chr20	48516496	48516497	chr20:48516497:T:A	rs1173259183	T	A	-	Sox3.mouse_HMG_2	6	1	+	1.3641247645486465	-5.543950463244411	CTTCAATGGCAGCAATG
chr20	48516526	48516527	chr20:48516527:G:T	rs1160630027	G	T	-	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr20	48573811	48573812	chr20:48573812:A:T	rs73325581	A	T	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr20	48629588	48629589	chr20:48629589:G:A	rs3936193	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr20	48684653	48684654	chr20:48684654:A:G	rs4810859	A	G	G	Sox3.mouse_HMG_2	11	1	-	1.2316867287145334	-5.4526874707458015	GATCGAGGGCATTGGTG
chr20	48737910	48737911	chr20:48737911:A:G	rs79895253	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr20	48764452	48764453	chr20:48764453:T:C	rs6019409	T	C	t	Sox3.mouse_HMG_2	5	1	-	14.867328690024205	8.478047255646317	CCTCAATGCTATTGATA
chr20	48809588	48809589	chr20:48809589:T:G	rs16994152	T	G	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr20	49052639	49052640	chr20:49052640:G:A	rs67623477	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr20	49550486	49550487	chr20:49550487:T:C	rs77208342	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.4024684884118142	-4.986812945966075	GGACAATGCCAGGGAGA
chr20	49580808	49580809	chr20:49580809:G:C	rs8119421	G	C	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr20	49625860	49625861	chr20:49625861:T:A	rs1199880725	T	A	T	Sox3.mouse_HMG_2	9	1	+	3.2013647880888176	-2.782616471795502	CTTCCATGTTATTGCTA
chr20	49628457	49628458	chr20:49628458:G:A	rs235026	G	A	G	Sox3.mouse_HMG_2	15	1	+	3.967199618800509	4.4009370700618495	AAACAATTTTTTTGAGT
chr20	49693269	49693270	chr20:49693270:C:T	rs4809751	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr20	49823485	49823486	chr20:49823486:T:C	rs1328454	T	C	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr20	49829753	49829754	chr20:49829754:A:G	rs17724104	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr20	49874366	49874367	chr20:49874367:T:G	rs585976	T	G	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr20	49920716	49920717	chr20:49920717:T:C	rs6067270	T	C	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr20	49957900	49957901	chr20:49957901:G:A	rs75408094	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr20	49957916	49957917	chr20:49957917:G:A	rs6067284	G	A	G	Sox3.mouse_HMG_2	11	1	+	1.435444608138668	-3.136039520194616	CTTCAATCTTGGTGATG
chr20	50067900	50067901	chr20:50067901:T:C	rs6020235	T	C	C	Sox3.mouse_HMG_2	10	1	-	2.4102136484678347	-4.498541130847386	GATAAATGCTATAGAGG
chr20	50355147	50355148	chr20:50355148:G:T	rs4809781	G	T	N	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr20	50400211	50400212	chr20:50400212:C:T	rs4809793	C	T	c	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr20	50425293	50425294	chr20:50425294:C:G	rs192263206	C	G	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr20	50563527	50563528	chr20:50563528:T:C	rs2145697	T	C	C	Sox3.mouse_HMG_2	2	1	-	3.034971142339024	1.1627532514426713	ACATAATGGTATTGGTT
chr20	50605407	50605408	chr20:50605408:A:G	rs78048165	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr20	50687592	50687593	chr20:50687593:C:T	rs34400825	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr20	50784147	50784148	chr20:50784148:C:T	rs62202838	C	T	t	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr20	50786597	50786598	chr20:50786598:A:G	rs73278635	A	G	A	Sox3.mouse_HMG_2	16	1	+	3.891902516201134	4.103476942686385	TTTTTATGTTATTGATA
chr20	50786615	50786616	chr20:50786616:T:C	rs73278636	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr20	50886834	50886835	chr20:50886835:T:C	rs6126118	T	C	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr20	50980789	50980790	chr20:50980790:G:A	rs989954860	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr20	51009085	51009086	chr20:51009086:A:G	rs4809820	A	G	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr20	51026155	51026156	chr20:51026156:G:C	rs6091250	G	C	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr20	51128069	51128070	chr20:51128070:G:A	rs6096275	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr20	51172595	51172596	chr20:51172596:A:G	rs2426257	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr20	51346896	51346897	chr20:51346897:T:C	rs111777744	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr20	51430252	51430253	chr20:51430253:A:G	rs761375	A	G	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr20	51443610	51443611	chr20:51443611:T:C	rs228832	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.8895796782004126	-3.499701756177479	GGTCAATGGCACTGGGA
chr20	51554829	51554830	chr20:51554830:C:T	rs147317695	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr20	51554830	51554831	chr20:51554831:A:G	rs4811193	A	G	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr20	51554861	51554862	chr20:51554862:G:A	rs76423759	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr20	51625174	51625175	chr20:51625175:C:A	rs2235859	C	A	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr20	51856056	51856057	chr20:51856057:A:C	rs6096616	A	C	A	Sox3.mouse_HMG_2	5	1	+	5.633348565248521	-1.2747266625445361	GATCAACTGCAGTGGTG
chr20	51886586	51886587	chr20:51886587:T:C	rs6096638	T	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr20	51886591	51886592	chr20:51886592:T:A	rs62226909	T	A	T	Sox3.mouse_HMG_2	14	1	-	5.199497460493865	1.1801159367452196	TTTCATTTCTAGTGATG
chr20	51995141	51995142	chr20:51995142:G:A	rs77243645	G	A	G	Sox3.mouse_HMG_2	0	1	-	4.902819338923454	4.417684324669345	CTTCAATTTTTTTGACT
chr20	52125246	52125247	chr20:52125247:T:C	rs6123133	T	C	C	Sox3.mouse_HMG_2	5	1	-	3.457506125699764	-2.9317753086781257	GATCAATGTCAGTTTCT
chr20	52973706	52973707	chr20:52973707:C:T	rs4811414	C	T	C	Sox3.mouse_HMG_2	8	1	+	0.8959900760510022	2.150412042206672	GGTCAGTGCCAGTGGCT
chr20	53053832	53053833	chr20:53053833:T:G	rs6091627	T	G	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr20	53154857	53154858	chr20:53154858:C:T	rs2107322	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr20	53179830	53179831	chr20:53179831:C:T	rs8117842	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr20	53426164	53426165	chr20:53426165:G:C	rs77936907	G	C	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr20	53446156	53446157	chr20:53446157:G:T	chr20:53446157:G:T	G	T	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr20	53555046	53555047	chr20:53555047:C:T	rs6022590	C	T	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr20	53590117	53590118	chr20:53590118:G:C	rs181450885	G	C	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr20	53639554	53639555	chr20:53639555:T:C	rs75394107	T	C	t	Sox3.mouse_HMG_2	16	1	-	3.208660662379796	3.4202350888650463	GTGCAATGATATTAATA
chr20	53657829	53657830	chr20:53657830:T:A	rs6022643	T	A	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr20	53747067	53747068	chr20:53747068:G:T	rs2041317	G	T	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr20	53857139	53857140	chr20:53857140:A:G	rs873340	A	G	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr20	53866005	53866006	chr20:53866006:A:G	rs6013823	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr20	53908463	53908464	chr20:53908464:C:T	rs77249472	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr20	54115822	54115823	chr20:54115823:T:C	rs17216707	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr20	54201363	54201364	chr20:54201364:C:T	rs62214559	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr20	54212282	54212283	chr20:54212283:G:T	rs6023039	G	T	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr20	54220069	54220070	chr20:54220070:T:A	rs1032212729	T	A	T	Sox3.mouse_HMG_2	4	1	-	3.9411192672627586	-2.966955960530298	TAACAATCTCATTGTTG
chr20	54267705	54267706	chr20:54267706:C:G	rs59946156	C	G	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr20	54541755	54541756	chr20:54541756:A:G	rs2426536	A	G	G	Sox3.mouse_HMG_2	15	1	+	4.356450897644634	3.922713446383293	CAACAACTTTAGTGAAA
chr20	54646876	54646877	chr20:54646877:T:C	rs11907426	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.8358403985709626	-3.553441035806926	CATCAATGTAGGTGAAT
chr20	54657648	54657649	chr20:54657649:G:A	rs190154436	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr20	55199286	55199287	chr20:55199287:T:C	rs6127426	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.0511020281150882	-3.338179406262801	TATCAATGTATGTGATC
chr20	55216585	55216586	chr20:55216586:T:A	rs2904455	T	A	A	Sox3.mouse_HMG_2	2	1	+	9.06780994348455	5.786153167701013	ACTTAATGTTAGTGATT
chr20	55714451	55714452	chr20:55714452:A:C	rs2207900	A	C	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr20	56072330	56072331	chr20:56072331:G:T	rs191918194	G	T	G	Sox3.mouse_HMG_2	13	1	+	2.80420765867355	-3.5830523802536622	GTTCAAAGCTATTGGGT
chr20	56553516	56553517	chr20:56553517:G:A	rs73153084	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr20	56724349	56724350	chr20:56724350:A:G	rs2426662	A	G	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr20	57110804	57110805	chr20:57110805:T:C	rs62203922	T	C	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr20	57168393	57168394	chr20:57168394:G:A	rs11086596	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr20	57168432	57168433	chr20:57168433:C:A	rs138625707	C	A	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr20	57229448	57229449	chr20:57229449:T:C	rs2426701	T	C	T	Sox3.mouse_HMG_2	11	1	+	1.7796575402944217	-4.904716659165914	TGTCCATTTCATAGATG
chr20	57260054	57260055	chr20:57260055:G:C	rs4811832	G	C	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr20	57464070	57464071	chr20:57464071:G:T	rs6025577	G	T	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr20	57610075	57610076	chr20:57610076:G:A	rs742724	G	A	A	Sox3.mouse_HMG_2	11	1	+	1.627518943283773	-2.9439651850495117	GATCGATGAGAGTGAAT
chr20	57643636	57643637	chr20:57643637:T:C	rs193099177	T	C	T	Sox3.mouse_HMG_2	16	1	-	0.8447316312331279	1.0563060577183787	GGTCATTGTCATGGAAA
chr20	57684242	57684243	chr20:57684243:A:G	rs114539186	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.5899941117714285	0.20071267739353776	GGTCAATGGTAATGACA
chr20	57897470	57897471	chr20:57897471:G:A	rs145316284	G	A	G	Sox3.mouse_HMG_2	1	1	+	2.850515225292556	4.856903167312012	GGTTAATGTGATTGTTT
chr20	57924826	57924827	chr20:57924827:T:G	chr20:57924827:T:G	T	G	T	Sox3.mouse_HMG_2	1	1	-	3.5560122396203373	0.8405707032763919	CATCAATTCCATTCCTG
chr20	57995784	57995785	chr20:57995785:A:G	rs10485811	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr20	57995788	57995789	chr20:57995789:A:G	rs10485812	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr20	58002042	58002043	chr20:58002043:G:A	rs4810113	G	A	G	Sox3.mouse_HMG_2	8	1	+	2.1239132673286	0.9051228825841034	TGACAATTGTGTTGAAG
chr20	58095772	58095773	chr20:58095773:G:C	rs17529936	G	C	g	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr20	58101904	58101905	chr20:58101905:G:T	rs146245164	G	T	g	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr20	58307181	58307182	chr20:58307182:T:C	rs509062	T	C	T	Sox3.mouse_HMG_2	1	1	-	1.4622614482885539	-0.5441264937309027	TATCATTTCCGTTGATA
chr20	58378236	58378237	chr20:58378237:A:G	rs6070447	A	G	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr20	58580423	58580424	chr20:58580424:G:C	rs11699206	G	C	G	Sox3.mouse_HMG_2	7	1	+	1.5825367845766931	-5.046284710511362	GCTCCAGGTTATTGATC
chr20	58635529	58635530	chr20:58635530:T:C	rs564715920	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr20	58991888	58991889	chr20:58991889:A:C	rs41276960	A	C	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr20	59087924	59087925	chr20:59087925:A:G	rs4449199	A	G	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr20	59122039	59122040	chr20:59122040:C:T	rs236715	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr20	59134109	59134110	chr20:59134110:A:G	rs80225530	A	G	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr20	59163457	59163458	chr20:59163458:A:G	rs150784118	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr20	59221795	59221796	chr20:59221796:C:T	rs117436397	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr20	59297829	59297830	chr20:59297830:C:T	rs260743	C	T	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr20	59394502	59394503	chr20:59394503:G:A	rs6128557	G	A	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr20	59639609	59639610	chr20:59639610:T:C	rs911150	T	C	C	Sox3.mouse_HMG_2	9	1	+	4.401425645427681	3.7087731025557216	GATTATTGGTATTGAGT
chr20	59751019	59751020	chr20:59751020:G:A	rs76237121	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr20	59776044	59776045	chr20:59776045:A:C	rs1182490	A	C	A	Sox3.mouse_HMG_2	6	1	-	2.4969129004270325	-4.411162327366023	AGACTATGCCAGTGATT
chr20	59780505	59780506	chr20:59780506:A:G	rs6100581	A	G	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr20	59780558	59780559	chr20:59780559:T:C	rs6092824	T	C	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr20	59813481	59813482	chr20:59813482:A:G	rs1338929	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr20	59822601	59822602	chr20:59822602:G:A	rs115768718	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr20	59992680	59992681	chr20:59992681:A:G	rs2426863	A	G	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr20	59992849	59992850	chr20:59992850:C:T	rs78587726	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr20	60011598	60011599	chr20:60011599:C:T	rs73131342	C	T	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr20	60069671	60069672	chr20:60069672:T:C	rs6100701	T	C	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr20	60331810	60331811	chr20:60331811:G:T	rs114751515	G	T	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr20	60484281	60484282	chr20:60484282:G:A	rs75009095	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr20	60510190	60510191	chr20:60510191:T:A	chr20:60510191:T:A	T	A	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr20	61338075	61338076	chr20:61338076:T:C	rs6101320	T	C	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr20	61404578	61404579	chr20:61404579:A:T	rs141933255	A	T	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr20	61757939	61757940	chr20:61757940:G:A	rs78770067	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr20	61781593	61781594	chr20:61781594:G:A	rs62204656	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr20	61945191	61945192	chr20:61945192:T:C	rs78918251	T	C	t	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr20	61948721	61948722	chr20:61948722:C:G	rs6061391	C	G	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr20	62500122	62500123	chr20:62500123:C:T	rs1264260767	C	T	C	Sox3.mouse_HMG_2	16	1	+	3.9345121876983242	5.537505237358775	CAGCAATGTGATTGAGC
chr20	62900650	62900651	chr20:62900651:G:T	rs112307037	G	T	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr20	62900692	62900693	chr20:62900693:G:A	rs185517337	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr20	63012065	63012066	chr20:63012066:A:T	rs563360924	A	T	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr20	63019600	63019601	chr20:63019601:G:A	rs114147630	G	A	G	Sox3.mouse_HMG_2	13	1	-	3.016304207568772	3.016304207568772	CATCAAAGTTATTCAGG
chr20	63137174	63137175	chr20:63137175:G:A	rs2427524	G	A	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr20	63495903	63495904	chr20:63495904:G:C	chr20:63495904:G:C	G	C	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr20	63678286	63678287	chr20:63678287:G:A	rs41310197	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr20	63973139	63973140	chr20:63973140:G:A	rs113085515	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr20	64036081	64036082	chr20:64036082:G:C	rs538808348	G	C	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr20	64138089	64138090	chr20:64138090:A:G	rs34668587	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr21	7243204	7243205	chr21:7243205:T:G	rs1484289566	T	G	.	Sox3.mouse_HMG_2	16	1	+	4.76838360610532	4.404661916471374	TTTCAAATTCATTGAGT
chr21	7955542	7955543	chr21:7955543:C:T	rs1421310927	C	T	.	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr21	7955579	7955580	chr21:7955580:T:A	rs1417244447	T	A	.	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr21	8993317	8993318	chr21:8993318:C:T	rs74908361	C	T	.	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr21	8994753	8994754	chr21:8994754:T:A	rs77410052	T	A	.	Sox3.mouse_HMG_2	5	1	-	5.82284626735815	-1.0852289604349046	TGTCAATTAGAGTGATA
chr21	8994753	8994754	chr21:8994754:T:C	chr21:8994754:T:C	T	C	.	Sox3.mouse_HMG_2	5	1	-	5.82284626735815	-0.5664351670197378	TGTCAATTAGAGTGATA
chr21	8995249	8995250	chr21:8995250:G:A	rs75577515	G	A	.	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr21	9000716	9000717	chr21:9000717:A:G	rs371505215	A	G	.	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr21	9000717	9000718	chr21:9000718:C:T	rs376044444	C	T	.	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr21	9005767	9005768	chr21:9005768:C:T	rs1807010	C	T	.	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr21	9330940	9330941	chr21:9330941:A:T	rs369243700	A	T	.	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr21	9850648	9850649	chr21:9850649:T:C	rs173381	T	C	N	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr21	9857929	9857930	chr21:9857930:T:C	rs2916358	T	C	t	Sox3.mouse_HMG_2	1	1	-	3.849998930534402	1.8436109885149443	TATTATTGTTATTGAGA
chr21	10021207	10021208	chr21:10021208:T:C	rs867112965	T	C	.	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr21	10274041	10274042	chr21:10274042:T:C	rs1197619207	T	C	.	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr21	10274054	10274055	chr21:10274055:A:T	rs1000593719	A	T	.	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr21	10274088	10274089	chr21:10274089:A:G	rs955501732	A	G	.	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr21	10429053	10429054	chr21:10429054:G:A	rs665688	G	A	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr21	10430363	10430364	chr21:10430364:T:A	rs2459202	T	A	T	Sox3.mouse_HMG_2	6	1	+	7.438171333800082	0.5300961060070256	AATAAATGTTATTGGTG
chr21	10663710	10663711	chr21:10663711:C:T	rs28460337	C	T	.	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr21	10734450	10734451	chr21:10734451:T:G	rs771280033	T	G	.	Sox3.mouse_HMG_2	4	1	-	3.1239118133132564	-3.784163414479801	AAGGAATGGTATTGAAA
chr21	10734458	10734459	chr21:10734459:A:G	rs28735724	A	G	.	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr21	14028296	14028297	chr21:14028297:C:T	rs2822383	C	T	N	Sox3.mouse_HMG_2	16	1	-	4.204829415874175	3.993254989388925	AGTCAATTAGATTGAAG
chr21	14076538	14076539	chr21:14076539:T:C	rs62209925	T	C	c	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr21	14082622	14082623	chr21:14082623:G:A	rs13049181	G	A	g	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr21	14275109	14275110	chr21:14275110:A:C	rs2822522	A	C	A	Sox3.mouse_HMG_2	1	1	+	1.5672057474391516	-1.1482357889047914	GATCAAAGGCAGTAAAT
chr21	14415416	14415417	chr21:14415417:G:A	rs2822661	G	A	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr21	14630836	14630837	chr21:14630837:A:G	rs7276028	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.3859555042708807	-3.003325930107009	TGTCTATGTTATTAATA
chr21	14652970	14652971	chr21:14652971:A:G	rs461058	A	G	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr21	14683246	14683247	chr21:14683247:G:T	rs12482612	G	T	T	Sox3.mouse_HMG_2	8	1	+	2.3448577643285327	3.1584956973327456	TCTGAATGGTAGTGTTC
chr21	14700729	14700730	chr21:14700730:G:A	rs13050099	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr21	14777111	14777112	chr21:14777112:C:A	rs13048782	C	A	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr21	14834386	14834387	chr21:14834387:T:C	rs55659418	T	C	T	Sox3.mouse_HMG_2	4	1	-	3.197310591553252	-3.191970842824637	GGTCAGTGTCAGAGATT
chr21	15010256	15010257	chr21:15010257:C:G	chr21:15010257:C:G	C	G	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr21	15052099	15052100	chr21:15052100:A:G	rs2823025	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr21	15275055	15275056	chr21:15275056:C:T	chr21:15275056:C:T	C	T	C	Sox3.mouse_HMG_2	8	1	+	5.357672532194934	6.612094498350604	AATCAACTCTATTGGTA
chr21	15306748	15306749	chr21:15306749:G:A	rs16981452	G	A	G	Sox3.mouse_HMG_2	0	1	-	2.363108390153452	1.8779733758993435	CTTCAATGCTACTAATG
chr21	15430234	15430235	chr21:15430235:T:C	rs17209200	T	C	T	Sox3.mouse_HMG_2	5	1	-	5.890019825546306	-0.49926160883158316	ACTCAATTTTGGTGATT
chr21	15628734	15628735	chr21:15628735:C:T	rs2823400	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr21	15692431	15692432	chr21:15692432:G:A	rs114134170	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr21	15743429	15743430	chr21:15743430:T:A	rs7277813	T	A	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr21	15858086	15858087	chr21:15858087:C:G	rs78470636	C	G	C	Sox3.mouse_HMG_2	0	1	-	2.8710214817226913	2.5663879641985035	GATCACTGGTATTCAGT
chr21	16185830	16185831	chr21:16185831:A:T	rs2823628	A	T	A	Sox3.mouse_HMG_2	16	1	-	2.680442821829	2.105146705709804	TAACATTTGTAGTGAGT
chr21	16305966	16305967	chr21:16305967:C:T	chr21:16305967:C:T	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr21	16370009	16370010	chr21:16370010:A:G	rs2823756	A	G	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr21	16588555	16588556	chr21:16588556:A:C	rs1000760385	A	C	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr21	16829846	16829847	chr21:16829847:C:G	rs2037944	C	G	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr21	16830685	16830686	chr21:16830686:A:G	rs2223075	A	G	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr21	17289932	17289933	chr21:17289933:T:A	rs6517752	T	A	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr21	17463472	17463473	chr21:17463473:A:T	rs2824323	A	T	T	Sox3.mouse_HMG_2	16	1	+	3.568851201849381	4.144147317968577	TATCAATGTCAGTTTAA
chr21	17650511	17650512	chr21:17650512:G:A	rs2824417	G	A	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr21	17676657	17676658	chr21:17676658:A:G	rs7275993	A	G	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr21	17799229	17799230	chr21:17799230:T:C	rs2824496	T	C	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr21	18325240	18325241	chr21:18325241:G:A	rs990214	G	A	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr21	18443674	18443675	chr21:18443675:C:T	rs983074196	C	T	c	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr21	18472986	18472987	chr21:18472987:G:A	rs2824843	G	A	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr21	18813588	18813589	chr21:18813589:A:T	rs9980441	A	T	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr21	18840494	18840495	chr21:18840495:A:C	rs2226800	A	C	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr21	19018860	19018861	chr21:19018861:G:A	rs2825272	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr21	19034317	19034318	chr21:19034318:A:G	rs2825301	A	G	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr21	19046047	19046048	chr21:19046048:G:A	rs73893496	G	A	g	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr21	19046072	19046073	chr21:19046073:C:T	rs10854430	C	T	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr21	19148346	19148347	chr21:19148347:A:G	rs7275188	A	G	A	Sox3.mouse_HMG_2	3	1	-	2.222198020718462	7.079053895940685	CACTAATGTCAGTGGTA
chr21	19356889	19356890	chr21:19356890:A:C	rs856185	A	C	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr21	20163254	20163255	chr21:20163255:G:A	rs1034349	G	A	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr21	20272952	20272953	chr21:20272953:G:A	rs112484390	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr21	20310185	20310186	chr21:20310186:G:A	rs2826161	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr21	20687288	20687289	chr21:20687289:A:G	rs74962136	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.1732916112746783	-3.215989823103211	GATCAATGACAGCTATT
chr21	20853469	20853470	chr21:20853470:T:A	rs566963785	T	A	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr21	21000817	21000818	chr21:21000818:A:G	rs138426866	A	G	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr21	21344253	21344254	chr21:21344254:C:T	rs7278783	C	T	C	Sox3.mouse_HMG_2	0	1	+	1.5076837675199075	1.0225487532657989	CGTCAAGGGCTTTGATA
chr21	21407166	21407167	chr21:21407167:C:G	rs2826829	C	G	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr21	21605762	21605763	chr21:21605763:C:A	rs74336637	C	A	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr21	21808249	21808250	chr21:21808250:C:A	rs2827050	C	A	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr21	22248552	22248553	chr21:22248553:A:G	rs138890202	A	G	A	Sox3.mouse_HMG_2	9	1	-	6.143842948239102	5.45119040536714	TATCAATGTTATTCCTG
chr21	22582309	22582310	chr21:22582310:T:C	rs2827617	T	C	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr21	23004068	23004069	chr21:23004069:T:A	rs2827789	T	A	T	Sox3.mouse_HMG_2	2	1	-	4.00095377201812	7.282610547801657	TAACAATTCTAATGAGA
chr21	23175595	23175596	chr21:23175596:C:T	rs2135335	C	T	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr21	23498859	23498860	chr21:23498860:C:G	rs62208226	C	G	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr21	23739485	23739486	chr21:23739486:T:A	rs7275880	T	A	A	Sox3.mouse_HMG_2	1	1	+	10.639513005880806	13.334736564934104	CTTCAATTTCAGTGAAA
chr21	24014047	24014048	chr21:24014048:A:G	rs34542175	A	G	a	Sox3.mouse_HMG_2	11	1	-	4.347940970736123	-2.336433228724212	AAGAAATGCTATTGATG
chr21	24590151	24590152	chr21:24590152:T:A	rs9975049	T	A	t	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr21	24707818	24707819	chr21:24707819:C:G	rs2829283	C	G	t	Sox3.mouse_HMG_2	16	1	-	2.6951235929788977	1.4558522329523926	GATCAATTTCATCAAGG
chr21	24728254	24728255	chr21:24728255:T:C	rs78526296	T	C	T	Sox3.mouse_HMG_2	0	1	+	2.287004497684223	2.77213951193833	TGTGAGTGGTAGTGATT
chr21	24931194	24931195	chr21:24931195:T:C	rs67132832	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr21	24941856	24941857	chr21:24941857:T:G	rs2829472	T	G	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr21	25487098	25487099	chr21:25487099:G:A	rs17001003	G	A	G	Sox3.mouse_HMG_2	13	1	+	5.767852630333065	-0.28378587385324666	CTTTAATGTCAGTGTTT
chr21	26077618	26077619	chr21:26077619:C:T	rs117349040	C	T	C	Sox3.mouse_HMG_2	8	1	+	7.058772236939527	8.313194203095195	CATCAATGCCATTTTTT
chr21	26077646	26077647	chr21:26077647:C:T	rs59737592	C	T	c	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr21	26099393	26099394	chr21:26099394:C:T	rs2830053	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr21	26297937	26297938	chr21:26297938:A:G	rs414516	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr21	26366087	26366088	chr21:26366088:C:T	rs62219377	C	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr21	26642560	26642561	chr21:26642561:T:C	rs461377	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr21	26736554	26736555	chr21:26736555:A:T	rs2409192	A	T	A	Sox3.mouse_HMG_2	1	1	-	2.0735808112429095	4.768804370296204	GTCCAATGGTAGTTATT
chr21	26946186	26946187	chr21:26946187:G:A	rs1186480527	G	A	G	Sox3.mouse_HMG_2	9	1	+	5.602308026563395	5.602308026563395	GATCAATGTGAGGGATG
chr21	27026681	27026682	chr21:27026682:A:G	rs77222011	A	G	A	Sox3.mouse_HMG_2	10	1	+	2.159650440550077	-4.74910433876514	CATCCAATCCATTGATG
chr21	27258102	27258103	chr21:27258103:A:T	rs2078299	A	T	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr21	27369249	27369250	chr21:27369250:G:A	rs2830884	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr21	28118903	28118904	chr21:28118904:A:G	rs2746192	A	G	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr21	28224529	28224530	chr21:28224530:G:T	rs2831668	G	T	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr21	28235014	28235015	chr21:28235015:A:G	rs442626	A	G	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr21	28436237	28436238	chr21:28436238:T:C	rs113362703	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr21	28487589	28487590	chr21:28487590:G:A	rs12053703	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr21	28605276	28605277	chr21:28605277:C:T	rs2831931	C	T	T	Sox3.mouse_HMG_2	1	1	+	3.2668311890800705	3.287049166370715	TCTCAAATATATTGAAA
chr21	28731041	28731042	chr21:28731042:A:G	rs8131891	A	G	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr21	28749753	28749754	chr21:28749754:G:A	rs56103672	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr21	28754159	28754160	chr21:28754160:A:G	rs73186036	A	G	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr21	28762011	28762012	chr21:28762012:T:C	rs2832061	T	C	T	Sox3.mouse_HMG_2	14	1	-	3.778403971988206	0.46033770221660436	ACACAATGGTAGAGATT
chr21	28836691	28836692	chr21:28836692:G:A	rs60849436	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr21	29261831	29261832	chr21:29261832:A:T	rs142990591	A	T	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr21	29342276	29342277	chr21:29342277:G:A	rs411697	G	A	G	Sox3.mouse_HMG_2	3	1	-	4.468514280076836	-0.3883415951453851	TTTCAATTCCATTCAAT
chr21	29387149	29387150	chr21:29387150:G:A	rs7278255	G	A	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr21	29578487	29578488	chr21:29578488:T:G	rs138624436	T	G	T	Sox3.mouse_HMG_2	12	1	+	6.190712259469551	-0.19587641320216415	GCTCAAGGCCAGTGATA
chr21	29679215	29679216	chr21:29679216:C:T	rs8128745	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr21	29708639	29708640	chr21:29708640:T:C	rs2832431	T	C	C	Sox3.mouse_HMG_2	5	1	+	3.861822117387942	3.861822117387942	CTTCATTGCTAGTGAGA
chr21	29830157	29830158	chr21:29830158:T:A	rs388700	T	A	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr21	30718589	30718590	chr21:30718590:C:T	rs2833031	C	T	T	Sox3.mouse_HMG_2	9	1	+	3.0756011574312314	3.7682537003031893	GCTCAATGGCATTTCTT
chr21	30979280	30979281	chr21:30979281:C:G	rs75486310	C	G	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr21	31203854	31203855	chr21:31203855:T:C	chr21:31203855:T:C	T	C	T	Sox3.mouse_HMG_2	11	1	+	3.1258870994552503	-3.558487100005085	CTTCAATCTTATTTATA
chr21	31222173	31222174	chr21:31222174:C:T	rs77926910	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr21	31337119	31337120	chr21:31337120:C:T	rs2833380	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr21	31352421	31352422	chr21:31352422:A:G	rs9647143	A	G	A	Sox3.mouse_HMG_2	5	1	-	2.2512605417341742	2.2512605417341742	CTTCATTGGCATTAATT
chr21	31364065	31364066	chr21:31364066:T:C	rs150424142	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr21	31382565	31382566	chr21:31382566:C:T	rs536419	C	T	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr21	31408572	31408573	chr21:31408573:T:G	rs117007720	T	G	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr21	31408594	31408595	chr21:31408595:G:A	rs57073567	G	A	G	Sox3.mouse_HMG_2	1	1	-	2.1745995628761525	2.194817540166796	CCAAAATGTTATTGAGC
chr21	31420602	31420603	chr21:31420603:G:T	rs7280668	G	T	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr21	31420613	31420614	chr21:31420614:C:T	rs2833404	C	T	T	Sox3.mouse_HMG_2	5	1	+	6.74078769005354	6.74078769005354	CATCACTGTTAGTGTTG
chr21	31793644	31793645	chr21:31793645:C:T	rs9981074	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr21	32192400	32192401	chr21:32192401:C:T	rs78098177	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr21	32357171	32357172	chr21:32357172:C:T	rs2833785	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr21	32408057	32408058	chr21:32408058:T:C	rs55642633	T	C	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr21	32435897	32435898	chr21:32435898:C:T	rs113106458	C	T	c	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr21	32473734	32473735	chr21:32473735:T:C	rs75300206	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr21	32520449	32520450	chr21:32520450:G:A	rs13046819	G	A	G	Sox3.mouse_HMG_2	14	1	+	3.4350219481324147	6.753088217904016	CTGCAATGTCAGTGGGT
chr21	32585233	32585234	chr21:32585234:C:T	rs2833917	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr21	32596889	32596890	chr21:32596890:A:G	rs1782986	A	G	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr21	33086465	33086466	chr21:33086466:A:G	rs58912052	A	G	A	Sox3.mouse_HMG_2	7	1	-	6.759613572511769	1.2566832912689583	ATTCAATTGTATAGATA
chr21	33119854	33119855	chr21:33119855:T:C	rs77574284	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr21	33127268	33127269	chr21:33127269:C:T	rs2834092	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr21	33332265	33332266	chr21:33332266:G:A	rs17875783	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr21	33417500	33417501	chr21:33417501:T:C	rs2834211	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr21	33492704	33492705	chr21:33492705:C:A	rs79777044	C	A	C	Sox3.mouse_HMG_2	3	1	+	6.939728685788014	0.039058446529105006	TATCAACTTCATTGACT
chr21	33762116	33762117	chr21:33762117:T:C	rs73199862	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr21	34021319	34021320	chr21:34021320:C:T	rs9979439	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr21	34326089	34326090	chr21:34326090:T:C	rs1013063	T	C	T	Sox3.mouse_HMG_2	15	1	+	3.765940219259869	-0.013859198245927032	CATCAAGGCTTTTGATA
chr21	34335924	34335925	chr21:34335925:G:A	rs6517224	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr21	34552584	34552585	chr21:34552585:T:C	rs2247912	T	C	C	Sox3.mouse_HMG_2	10	1	-	6.939924401703514	0.03116962238829374	TGTCATTTCCATTGATT
chr21	34605632	34605633	chr21:34605633:A:G	rs9305553	A	G	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr21	34636996	34636997	chr21:34636997:T:C	rs1892600	T	C	C	Sox3.mouse_HMG_2	5	1	-	2.189941848455109	-4.199339585922782	GGTAAATGCTAGTGGAG
chr21	34752239	34752240	chr21:34752240:G:A	rs78167512	G	A	G	Sox3.mouse_HMG_2	3	1	-	2.086198939816592	-2.770656935405631	GACCAATGCTGTTGAGG
chr21	34783120	34783121	chr21:34783121:T:G	rs186099645	T	G	T	Sox3.mouse_HMG_2	5	1	-	3.02736357973784	-3.8807116480552186	AGTCAATGTGAGTGTTC
chr21	34855235	34855236	chr21:34855236:A:C	rs140000309	A	C	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr21	34857390	34857391	chr21:34857391:G:A	rs9984858	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr21	34919930	34919931	chr21:34919931:A:C	rs10460712	A	C	C	Sox3.mouse_HMG_2	7	1	-	1.7605824242743273	2.886473638119573	GCTCAATTACCGTGAGG
chr21	34997148	34997149	chr21:34997149:C:T	rs73900767	C	T	T	Sox3.mouse_HMG_2	11	1	-	4.040766331873714	-0.5307177964595697	ATTCACTGTCAGTGAAT
chr21	34999426	34999427	chr21:34999427:T:C	rs150590843	T	C	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr21	35067033	35067034	chr21:35067034:G:A	rs2156401	G	A	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr21	35234597	35234598	chr21:35234598:C:T	rs62217047	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr21	35266817	35266818	chr21:35266818:C:T	chr21:35266818:C:T	C	T	C	Sox3.mouse_HMG_2	7	1	-	4.597017002025295	-2.031804493062761	CGGCAATGTCATTCATA
chr21	35266823	35266824	chr21:35266824:C:T	rs558316982	C	T	C	Sox3.mouse_HMG_2	1	1	-	4.597017002025295	6.603404944044753	CGGCAATGTCATTCATA
chr21	35283680	35283681	chr21:35283681:A:G	rs73901926	A	G	A	Sox3.mouse_HMG_2	9	1	-	5.678947590448005	4.9862950475760455	TAACAATGCTAGTGTGA
chr21	35346777	35346778	chr21:35346778:T:C	rs2834916	T	C	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr21	35346788	35346789	chr21:35346789:A:G	rs13050967	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr21	35617876	35617877	chr21:35617877:A:T	rs2142034	A	T	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr21	35834090	35834091	chr21:35834091:G:A	rs74276113	G	A	G	Sox3.mouse_HMG_2	9	1	-	7.978053155864652	8.67070569873661	TAACAATTCCATTGTTA
chr21	35940026	35940027	chr21:35940027:G:A	rs1573304	G	A	G	Sox3.mouse_HMG_2	3	1	-	1.8590590977010173	-2.997796777521204	CGTCAATGTAACTGAAA
chr21	36021283	36021284	chr21:36021284:A:G	rs2835233	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr21	36185634	36185635	chr21:36185635:A:G	rs2835304	A	G	A	Sox3.mouse_HMG_2	2	1	+	4.518821742555236	2.646603851658883	TAACAATGTCAGGGAAG
chr21	36481023	36481024	chr21:36481024:G:C	rs115270476	G	C	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr21	36495825	36495826	chr21:36495826:T:G	rs58865958	T	G	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr21	36757640	36757641	chr21:36757641:C:A	rs2850103	C	A	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr21	36908518	36908519	chr21:36908519:T:C	rs115715506	T	C	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr21	36988964	36988965	chr21:36988965:A:C	rs58128008	A	C	c	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr21	36988979	36988980	chr21:36988980:C:T	rs73198004	C	T	t	Sox3.mouse_HMG_2	3	1	+	3.8184247861444978	-1.0384310890777255	AATCAATGGTAGGGGAT
chr21	37463091	37463092	chr21:37463092:G:A	rs2186338	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr21	37547031	37547032	chr21:37547032:A:G	rs111243825	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr21	37547082	37547083	chr21:37547083:C:T	rs189048440	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr21	37656110	37656111	chr21:37656111:A:G	rs857966	A	G	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr21	38222014	38222015	chr21:38222015:G:A	rs2836201	G	A	A	Sox3.mouse_HMG_2	15	1	-	3.070048696093858	6.849848113599654	CAAAAATTCTATTGACT
chr21	38261800	38261801	chr21:38261801:C:T	rs2836253	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr21	38288446	38288447	chr21:38288447:C:T	rs2836290	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr21	38313021	38313022	chr21:38313022:T:G	rs184703662	T	G	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr21	38313043	38313044	chr21:38313044:T:C	rs73423924	T	C	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr21	38498385	38498386	chr21:38498386:G:A	rs2836441	G	A	A	Sox3.mouse_HMG_2	0	1	+	10.080162334868447	8.383670041165786	GATCAAGTTTATTGATC
chr21	38753851	38753852	chr21:38753852:G:A	rs2252185	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr21	38757175	38757176	chr21:38757176:G:C	rs34092958	G	C	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr21	38800411	38800412	chr21:38800412:T:C	rs8134019	T	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr21	38800571	38800572	chr21:38800572:A:G	rs8133056	A	G	A	Sox3.mouse_HMG_2	4	1	+	4.7846869550890965	-1.6045944792887938	TTTCAATTCCATTGTCA
chr21	38857417	38857418	chr21:38857418:T:C	rs458748	T	C	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr21	38857424	38857425	chr21:38857425:T:G	rs458749	T	G	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr21	38949624	38949625	chr21:38949625:A:T	rs7278217	A	T	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr21	38990253	38990254	chr21:38990254:C:A	rs116594496	C	A	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr21	39113006	39113007	chr21:39113007:G:T	rs1882772	G	T	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr21	39189944	39189945	chr21:39189945:C:T	rs183073434	C	T	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr21	39251741	39251742	chr21:39251742:T:G	rs2836959	T	G	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr21	39317446	39317447	chr21:39317447:A:C	rs537664807	A	C	A	Sox3.mouse_HMG_2	5	1	+	2.159364416961765	-4.748710810831287	CTTAGATGTCATTGATA
chr21	39350143	39350144	chr21:39350144:T:A	rs2239384	T	A	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr21	39454136	39454137	chr21:39454137:A:G	rs3827209	A	G	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr21	39576140	39576141	chr21:39576141:G:A	rs551439	G	A	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr21	39604953	39604954	chr21:39604954:C:A	rs62222820	C	A	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr21	39769924	39769925	chr21:39769925:G:A	rs2837193	G	A	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr21	39923747	39923748	chr21:39923748:A:G	rs1888504	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr21	40103362	40103363	chr21:40103363:A:T	rs2837429	A	T	A	Sox3.mouse_HMG_2	2	1	-	4.5054472623012245	1.2237904865176892	TATCAATTTTGTTTATT
chr21	40146473	40146474	chr21:40146474:T:G	rs2837456	T	G	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr21	40194850	40194851	chr21:40194851:T:C	rs58906309	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr21	40194881	40194882	chr21:40194882:G:A	rs8127634	G	A	A	Sox3.mouse_HMG_2	0	1	-	3.9467747400759823	3.461639725821874	CGCCAATTTCAGTGGTA
chr21	40383481	40383482	chr21:40383482:T:C	rs2837596	T	C	T	Sox3.mouse_HMG_2	2	1	+	5.542321621315002	-0.8245756852107409	TCTCAATTCTTGTGATT
chr21	40543332	40543333	chr21:40543333:T:G	rs7278073	T	G	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr21	40567812	40567813	chr21:40567813:C:A	rs2837709	C	A	A	Sox3.mouse_HMG_2	9	1	+	2.228348879307109	-3.0629798377052504	GTTAAATGGCATGGATT
chr21	41058083	41058084	chr21:41058084:A:C	rs2104809	A	C	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr21	41541334	41541335	chr21:41541335:G:T	rs73903421	G	T	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr21	41600060	41600061	chr21:41600061:C:T	rs4919939	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr21	41631230	41631231	chr21:41631231:T:G	rs62217773	T	G	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr21	41715384	41715385	chr21:41715385:G:C	rs4919931	G	C	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr21	41827058	41827059	chr21:41827059:A:G	rs28415259	A	G	G	Sox3.mouse_HMG_2	14	1	+	5.237080825721911	1.9190145559503093	CAGCAATGCTAGGGATT
chr21	42021904	42021905	chr21:42021905:G:A	rs529265696	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr21	42198447	42198448	chr21:42198448:C:T	rs78565884	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr21	42307434	42307435	chr21:42307435:T:C	rs118187505	T	C	T	Sox3.mouse_HMG_2	4	1	-	3.462542248458319	-2.926739185919571	CTTCAATGCCATGGGTC
chr21	42398680	42398681	chr21:42398681:A:G	rs9325634	A	G	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr21	42447676	42447677	chr21:42447677:G:C	rs3827233	G	C	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr21	42491692	42491693	chr21:42491693:C:T	rs17178101	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr21	42563318	42563319	chr21:42563319:G:A	rs17115129	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr21	42623733	42623734	chr21:42623734:C:G	rs2839566	C	G	C	Sox3.mouse_HMG_2	0	1	-	2.0148956486109726	1.710262131086785	GCTAAATGGTGTTGATG
chr21	42997512	42997513	chr21:42997513:A:G	rs2839615	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.810210895822362	0.4209294614444709	GTATAATGTCAGTGATT
chr21	43018678	43018679	chr21:43018679:A:G	rs1672136	A	G	A	Sox3.mouse_HMG_2	5	1	+	5.2884695695618715	-1.1008118648160183	TGACAATGTCATTGGGC
chr21	43311739	43311740	chr21:43311740:T:C	rs637345	T	C	.	Sox3.mouse_HMG_2	11	1	+	3.2132813164883607	-3.4710928829719756	GAACACTGTCATTGGAT
chr21	43713008	43713009	chr21:43713009:T:C	rs76891477	T	C	T	Sox3.mouse_HMG_2	12	1	+	3.3794495569819114	-2.6715175809489047	TTTCCATTGCATTGAGA
chr21	43812512	43812513	chr21:43812513:C:T	rs1048179336	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr21	43880156	43880157	chr21:43880157:T:A	rs147096178	T	A	T	Sox3.mouse_HMG_2	10	1	-	7.5255679198485455	0.6168131405333251	CATCAATTTCATGGGTG
chr21	44332412	44332413	chr21:44332413:T:C	rs3761393	T	C	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr21	44479974	44479975	chr21:44479975:C:A	rs60036065	C	A	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr21	44552708	44552709	chr21:44552709:C:T	rs146660912	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr21	44598138	44598139	chr21:44598139:A:G	rs443484	A	G	G	Sox3.mouse_HMG_2	9	1	-	5.783786868160246	5.091134325288288	TGATAATGCTAGTGATG
chr21	44678182	44678183	chr21:44678183:A:G	rs73234839	A	G	A	Sox3.mouse_HMG_2	15	1	-	3.545094312879294	-0.2347051046265018	TATCAATAGGAGTGATA
chr21	44867252	44867253	chr21:44867253:G:T	rs73238101	G	T	G	Sox3.mouse_HMG_2	3	1	-	8.665661438591949	1.7649911993330418	GAACAGTGTTAGTGATT
chr21	44885997	44885998	chr21:44885998:C:A	rs117989670	C	A	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr21	45260622	45260623	chr21:45260623:G:C	rs34886433	G	C	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr21	45525844	45525845	chr21:45525845:C:T	rs374164733	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr21	45553533	45553534	chr21:45553534:C:T	rs1035184202	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr21	45767084	45767085	chr21:45767085:C:T	rs374848917	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr21	46132294	46132295	chr21:46132295:G:A	rs35548026	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr21	46475393	46475394	chr21:46475394:G:A	rs2839275	G	A	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr21	46515513	46515514	chr21:46515514:G:A	rs150870200	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr21	46551019	46551020	chr21:46551020:T:C	rs2839320	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr22	10716901	10716902	chr22:10716902:C:T	rs1253256349	C	T	.	Sox3.mouse_HMG_2	8	1	+	2.0430292163343258	3.2974511824899984	AATCAATGCTATTCCAT
chr22	10717059	10717060	chr22:10717060:G:C	chr22:10717060:G:C	G	C	.	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr22	10717061	10717062	chr22:10717062:C:T	rs878919857	C	T	.	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr22	10721715	10721716	chr22:10721716:C:G	rs1227534642	C	G	.	Sox3.mouse_HMG_2	3	1	+	3.02075735199598	-3.029761957893315	ACTCAAATCCATTGAAT
chr22	15626358	15626359	chr22:15626359:C:G	rs8135352	C	G	.	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr22	15775950	15775951	chr22:15775951:G:T	rs866115335	G	T	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr22	15775988	15775989	chr22:15775989:T:C	rs867835380	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr22	15815075	15815076	chr22:15815076:C:G	rs7291414	C	G	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr22	15937055	15937056	chr22:15937056:A:T	rs1384470218	A	T	.	Sox3.mouse_HMG_2	1	1	+	4.207082435023907	1.5118588759706129	AAAGAATGTTAGTGAGG
chr22	16824886	16824887	chr22:16824887:G:A	rs9606478	G	A	.	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr22	16967527	16967528	chr22:16967528:A:T	rs11704162	A	T	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr22	17106768	17106769	chr22:17106769:G:A	rs73381911	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr22	17106789	17106790	chr22:17106790:A:G	rs2241049	A	G	a	Sox3.mouse_HMG_2	12	1	-	3.0579166068818173	-2.9930505310489988	ACTGAATGTTATTGGAA
chr22	17381185	17381186	chr22:17381186:C:T	rs11089174	C	T	T	Sox3.mouse_HMG_2	13	1	-	7.7949655126965585	1.7433270085102466	AATCAATGCCAGTGTAA
chr22	17641565	17641566	chr22:17641566:G:A	rs12167771	G	A	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr22	17726729	17726730	chr22:17726730:A:G	rs73378798	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr22	17803959	17803960	chr22:17803960:T:C	rs187464145	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.261492347663636	-1.4228818517967006	AATCAATGATATGGAGC
chr22	17803964	17803965	chr22:17803965:C:T	rs73382727	C	T	C	Sox3.mouse_HMG_2	16	1	+	5.261492347663636	6.864485397324087	AATCAATGATATGGAGC
chr22	17924973	17924974	chr22:17924974:C:T	rs75328607	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr22	17930162	17930163	chr22:17930163:G:A	rs13058527	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr22	17943820	17943821	chr22:17943821:C:T	chr22:17943821:C:T	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr22	18887023	18887024	chr22:18887024:T:G	rs3970581	T	G	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr22	19048332	19048333	chr22:19048333:T:C	rs73384864	T	C	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr22	19063364	19063365	chr22:19063365:A:G	rs9617765	A	G	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr22	19423914	19423915	chr22:19423915:A:G	rs2283653	A	G	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr22	19620916	19620917	chr22:19620917:A:G	rs9618625	A	G	G	Sox3.mouse_HMG_2	1	1	+	3.8234136268563295	1.817025684836871	CATCACTGTCAGTGCTA
chr22	19648592	19648593	chr22:19648593:T:C	rs528176308	T	C	T	Sox3.mouse_HMG_2	4	1	-	7.191295022927417	0.802013588549528	TGTCAATCTTATTGAGG
chr22	19688724	19688725	chr22:19688725:A:G	rs5993794	A	G	A	Sox3.mouse_HMG_2	4	1	+	0.16302425143168414	-6.226257182946206	GAGCAATGGCCTTGGAG
chr22	19723281	19723282	chr22:19723282:C:T	rs185431344	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr22	19865568	19865569	chr22:19865569:G:A	rs58452173	G	A	G	Sox3.mouse_HMG_2	10	1	+	2.056724733127158	8.965479512442379	GATAAATTACGTTGATT
chr22	19870651	19870652	chr22:19870652:A:C	rs78190485	A	C	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr22	20000643	20000644	chr22:20000644:G:A	rs4819852	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr22	20038128	20038129	chr22:20038129:C:T	rs73150856	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr22	20409709	20409710	chr22:20409710:G:A	rs73156918	G	A	G	Sox3.mouse_HMG_2	16	1	-	2.420203354971371	4.023196404631822	TAATAATGGTAATGATC
chr22	20419189	20419190	chr22:20419190:G:C	rs58803203	G	C	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr22	20419230	20419231	chr22:20419231:G:C	rs738088	G	C	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr22	20532134	20532135	chr22:20532135:C:T	rs114996979	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr22	20568276	20568277	chr22:20568277:A:G	rs76779340	A	G	A	Sox3.mouse_HMG_2	14	1	+	0.8978238932417535	-2.4202423765298477	CGTCAGTGCTTGTGATA
chr22	20624100	20624101	chr22:20624101:C:G	rs73159169	C	G	c	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr22	20748684	20748685	chr22:20748685:G:A	rs738057	G	A	g	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr22	20764361	20764362	chr22:20764362:G:A	rs9917585	G	A	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr22	21009879	21009880	chr22:21009880:C:T	rs994709831	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr22	21010559	21010560	chr22:21010560:T:C	rs395938	T	C	C	Sox3.mouse_HMG_2	10	1	-	0.8753535276784159	-6.033401251636803	GGGGAATGCCAGTGAAT
chr22	21010577	21010578	chr22:21010578:T:A	rs2516545	T	A	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr22	21696479	21696480	chr22:21696480:A:G	rs710173	A	G	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr22	21713024	21713025	chr22:21713025:T:C	rs79239229	T	C	T	Sox3.mouse_HMG_2	12	1	+	1.1135852700374556	-4.937381867893361	GCTCCATGTCACTGATC
chr22	21782108	21782109	chr22:21782109:T:G	rs9607272	T	G	t	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr22	21857590	21857591	chr22:21857591:T:C	rs11913120	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.0831349707835125	-3.306146463594378	TTACAATGGTATGGAAG
chr22	21918363	21918364	chr22:21918364:A:G	rs9610608	A	G	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr22	22061343	22061344	chr22:22061344:C:T	rs12484080	C	T	c	Sox3.mouse_HMG_2	3	1	+	3.1000742116837485	-1.7567816635384719	CAGCTATGCCATTGAAT
chr22	22085654	22085655	chr22:22085655:C:G	rs17555104	C	G	g	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr22	22131255	22131256	chr22:22131256:A:C	chr22:22131256:A:C	A	C	.	Sox3.mouse_HMG_2	9	1	-	2.4577405234979173	-3.5262407363864017	ATTCAATTGTGTTGTTT
chr22	22214282	22214283	chr22:22214283:C:T	rs111894887	C	T	.	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr22	22242994	22242995	chr22:22242995:A:G	rs5750799	A	G	.	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr22	22514811	22514812	chr22:22514812:G:A	rs150588157	G	A	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr22	22571262	22571263	chr22:22571263:T:A	rs2097206	T	A	t	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr22	22571510	22571511	chr22:22571511:C:T	rs6002786	C	T	t	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr22	22632468	22632469	chr22:22632469:T:C	rs57741889	T	C	.	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr22	22657559	22657560	chr22:22657560:G:A	rs6003185	G	A	.	Sox3.mouse_HMG_2	11	1	-	0.7726143182960742	7.45698851775641	CATCAAATCTACTGAAG
chr22	22660228	22660229	chr22:22660229:C:T	rs455578	C	T	.	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr22	22753062	22753063	chr22:22753063:C:T	rs28370403	C	T	.	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr22	22753065	22753066	chr22:22753066:A:G	rs28398287	A	G	.	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr22	22813239	22813240	chr22:22813240:A:T	rs145360226	A	T	.	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr22	22909671	22909672	chr22:22909672:C:T	rs5759524	C	T	.	Sox3.mouse_HMG_2	9	1	+	7.931557592969695	8.624210135841656	GTTCTATTTCATTGATG
chr22	22952565	22952566	chr22:22952566:C:A	rs546959547	C	A	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr22	23054597	23054598	chr22:23054598:A:G	rs41277289	A	G	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr22	23129102	23129103	chr22:23129103:C:T	rs143436719	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr22	23353216	23353217	chr22:23353217:T:C	rs4820550	T	C	t	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr22	23394095	23394096	chr22:23394096:A:C	rs73392676	A	C	N	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr22	23394117	23394118	chr22:23394118:C:T	rs73880807	C	T	c	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr22	23517508	23517509	chr22:23517509:G:T	rs114090144	G	T	g	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr22	23517552	23517553	chr22:23517553:T:A	rs184059905	T	A	t	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr22	23525573	23525574	chr22:23525574:G:C	rs147354058	G	C	g	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr22	23844170	23844171	chr22:23844171:T:G	rs5760064	T	G	T	Sox3.mouse_HMG_2	14	1	-	3.862122607340928	-2.170406010247717	TTTTAATTTTATTTATT
chr22	23890537	23890538	chr22:23890538:G:A	rs7287669	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr22	23910632	23910633	chr22:23910633:C:T	rs7291874	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr22	23910654	23910655	chr22:23910655:T:C	rs5751770	T	C	T	Sox3.mouse_HMG_2	12	1	+	9.18451500056507	3.133547862634253	GGTCAAGGCTATTGATG
chr22	24092506	24092507	chr22:24092507:C:T	rs738808	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr22	24444707	24444708	chr22:24444708:C:T	rs17004921	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr22	24445566	24445567	chr22:24445567:T:C	rs562548070	T	C	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr22	24631676	24631677	chr22:24631677:G:A	rs73879098	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr22	24765388	24765389	chr22:24765389:C:T	rs5760625	C	T	T	Sox3.mouse_HMG_2	16	1	-	4.635664747444959	4.424090320959708	CTTCAAGTTTAGTGAAG
chr22	24966009	24966010	chr22:24966010:T:C	rs5996800	T	C	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr22	25085247	25085248	chr22:25085248:A:G	rs6004430	A	G	A	Sox3.mouse_HMG_2	6	1	-	4.020537808030922	-2.368743626346967	AAACAATGGCTTTGAAT
chr22	25110811	25110812	chr22:25110812:C:T	rs713989	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr22	25365602	25365603	chr22:25365603:C:T	rs6004606	C	T	.	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr22	25438374	25438375	chr22:25438375:C:T	rs5761069	C	T	-	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr22	25493189	25493190	chr22:25493190:T:C	rs11090398	T	C	T	Sox3.mouse_HMG_2	12	1	+	0.814187729321294	-5.2367794086095225	TTTCAATGGCTGTGTTC
chr22	25493208	25493209	chr22:25493209:C:G	rs560918724	C	G	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr22	25508110	25508111	chr22:25508111:A:G	rs561251099	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr22	25510835	25510836	chr22:25510836:A:G	rs476240	A	G	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr22	25510843	25510844	chr22:25510844:C:T	rs476279	C	T	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr22	25511937	25511938	chr22:25511938:C:A	rs507715	C	A	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr22	25746524	25746525	chr22:25746525:A:C	rs133856	A	C	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr22	25758540	25758541	chr22:25758541:C:T	rs5761165	C	T	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr22	25775795	25775796	chr22:25775796:C:T	rs116308924	C	T	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr22	25996267	25996268	chr22:25996268:A:G	rs5761347	A	G	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr22	26196941	26196942	chr22:26196942:G:C	rs1474602	G	C	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr22	26199571	26199572	chr22:26199572:C:T	rs9613126	C	T	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr22	26255799	26255800	chr22:26255800:T:C	rs737792	T	C	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr22	26265533	26265534	chr22:26265534:G:A	rs4640491	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr22	26555622	26555623	chr22:26555623:G:A	rs4820685	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr22	26641312	26641313	chr22:26641313:G:A	rs145894133	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr22	26645345	26645346	chr22:26645346:C:T	rs190325753	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr22	26645378	26645379	chr22:26645379:C:T	rs866111829	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr22	26650697	26650698	chr22:26650698:A:T	rs4822760	A	T	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr22	26725400	26725401	chr22:26725401:A:G	rs5761705	A	G	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr22	26770576	26770577	chr22:26770577:A:G	rs5752409	A	G	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr22	26953270	26953271	chr22:26953271:T:G	rs966560	T	G	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr22	27063759	27063760	chr22:27063760:G:C	rs2331366	G	C	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr22	27097566	27097567	chr22:27097567:C:T	rs62222832	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr22	27097607	27097608	chr22:27097608:C:G	rs760533	C	G	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr22	27146983	27146984	chr22:27146984:C:G	rs9608582	C	G	c	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr22	27173647	27173648	chr22:27173648:G:C	rs77963987	G	C	G	Sox3.mouse_HMG_2	8	1	-	3.094193424173054	3.5349774573245116	TTAAAATTCTATTGATA
chr22	27175212	27175213	chr22:27175213:G:A	rs527647716	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr22	27219343	27219344	chr22:27219344:T:C	rs715601	T	C	C	Sox3.mouse_HMG_2	4	1	-	2.623396212181066	-3.765885222196825	GGTCAGTGCCATTTATG
chr22	27225033	27225034	chr22:27225034:T:C	rs75860721	T	C	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr22	27238837	27238838	chr22:27238838:G:C	rs512856	G	C	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr22	27248987	27248988	chr22:27248988:A:G	rs552212	A	G	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr22	27406469	27406470	chr22:27406470:A:G	rs16984531	A	G	A	Sox3.mouse_HMG_2	4	1	+	4.543548830337692	-1.845732604040197	AAACAATGGCAATGAGT
chr22	27513144	27513145	chr22:27513145:A:G	rs5762222	A	G	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr22	27527608	27527609	chr22:27527609:T:C	rs953825875	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr22	27636865	27636866	chr22:27636866:G:A	rs4822926	G	A	A	Sox3.mouse_HMG_2	11	1	+	1.0826941652107802	-3.488789963122505	CATCAGTGGCAGGGAAG
chr22	27637049	27637050	chr22:27637050:A:G	rs17468634	A	G	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr22	27637064	27637065	chr22:27637065:A:G	rs134003	A	G	A	Sox3.mouse_HMG_2	4	1	+	2.9350337824342043	-3.454247651943686	TATCAATGGCGGTGGAA
chr22	27671524	27671525	chr22:27671525:G:A	rs78260427	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr22	27758629	27758630	chr22:27758630:G:T	rs2267110	G	T	T	Sox3.mouse_HMG_2	3	1	-	1.3384872241042474	-5.56218301515466	GAACAATGCCAGGGACC
chr22	27838956	27838957	chr22:27838957:C:T	rs60299340	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr22	27978230	27978231	chr22:27978231:G:A	rs7625	G	A	G	Sox3.mouse_HMG_2	15	1	+	1.3974948396819797	1.831232290943321	CGTGAATGCCAGTGGGA
chr22	27993023	27993024	chr22:27993024:C:A	rs138646	C	A	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr22	28012425	28012426	chr22:28012426:C:T	rs138671	C	T	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr22	28399091	28399092	chr22:28399092:T:C	rs2346395	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr22	28399093	28399094	chr22:28399094:T:C	rs142275913	T	C	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr22	28422041	28422042	chr22:28422042:A:G	rs16986400	A	G	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr22	28440735	28440736	chr22:28440736:A:G	rs528661785	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr22	28802162	28802163	chr22:28802163:T:G	rs3788409	T	G	G	Sox3.mouse_HMG_2	8	1	+	3.077352273272669	2.2637143402684563	GGTCAATTTTATTTTGG
chr22	28809015	28809016	chr22:28809016:G:A	rs5752803	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr22	28918910	28918911	chr22:28918911:T:C	rs469992	T	C	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr22	29016938	29016939	chr22:29016939:C:G	rs114567405	C	G	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr22	29065161	29065162	chr22:29065162:T:A	rs134561	T	A	T	Sox3.mouse_HMG_2	8	1	+	4.24351142217464	2.2110831044259314	TGTGAATGTTATTAATA
chr22	29601584	29601585	chr22:29601585:T:C	rs715490	T	C	T	Sox3.mouse_HMG_2	6	1	+	2.2152088591961965	-4.174072575181692	AAGCAATGATAATGAAG
chr22	29687224	29687225	chr22:29687225:G:C	rs117105323	G	C	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr22	29887514	29887515	chr22:29887515:T:C	rs73161099	T	C	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr22	29995000	29995001	chr22:29995001:T:C	rs3788423	T	C	C	Sox3.mouse_HMG_2	5	1	-	4.329204760622581	-2.060076673755309	AGTCAATTGCAATGAGG
chr22	30039412	30039413	chr22:30039413:G:A	rs5753002	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr22	30044543	30044544	chr22:30044544:G:A	rs41178	G	A	G	Sox3.mouse_HMG_2	8	1	-	2.299972246180886	3.5543942123365557	GATCAATTCAAATGAGG
chr22	30062403	30062404	chr22:30062404:T:A	rs73883363	T	A	-	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr22	30196925	30196926	chr22:30196926:C:T	rs149802821	C	T	C	Sox3.mouse_HMG_2	15	1	-	2.6255762092008776	3.0593136604622186	CCTCATTTACATTGAGA
chr22	30311582	30311583	chr22:30311583:T:A	chr22:30311583:T:A	T	A	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr22	30382469	30382470	chr22:30382470:A:G	rs17658238	A	G	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr22	30391200	30391201	chr22:30391201:T:C	rs61583714	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr22	30421098	30421099	chr22:30421099:G:C	rs141780718	G	C	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr22	30458675	30458676	chr22:30458676:G:A	rs4820851	G	A	g	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr22	30610564	30610565	chr22:30610565:G:A	rs5753233	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr22	30784690	30784691	chr22:30784691:G:A	rs12165718	G	A	g	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr22	30836086	30836087	chr22:30836087:T:C	rs136217	T	C	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr22	30924683	30924684	chr22:30924684:C:T	rs775047848	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr22	30964605	30964606	chr22:30964606:G:A	rs2240182	G	A	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr22	31053249	31053250	chr22:31053250:G:T	rs76627409	G	T	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr22	31086492	31086493	chr22:31086493:A:G	rs115035456	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr22	31244770	31244771	chr22:31244771:T:A	rs944272324	T	A	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr22	31633364	31633365	chr22:31633365:C:G	rs111697884	C	G	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr22	31633379	31633380	chr22:31633380:C:A	rs113992242	C	A	C	Sox3.mouse_HMG_2	2	1	-	3.917702216112907	9.071576882792797	AAGCAATGCCAGTGGAT
chr22	31764877	31764878	chr22:31764878:A:G	rs74459381	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.836309282413875	-1.5529721519640134	GATCAATTGTGTTGCTT
chr22	31815425	31815426	chr22:31815426:A:C	rs5749334	A	C	C	Sox3.mouse_HMG_2	1	1	+	1.5319508023460482	-1.183490733997892	GATAAAGTGCAGTGATG
chr22	31940969	31940970	chr22:31940970:T:C	rs56139972	T	C	C	Sox3.mouse_HMG_2	11	1	+	2.248839331137525	-4.435534868322809	CCTGATTTTTATTGATG
chr22	32020240	32020241	chr22:32020241:G:A	rs74924328	G	A	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr22	32123822	32123823	chr22:32123823:A:C	rs117129307	A	C	A	Sox3.mouse_HMG_2	2	1	-	4.6655066007678965	-0.48836806591199317	TGTCAGTTTCAGTGAAG
chr22	32136243	32136244	chr22:32136244:A:G	rs5753872	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr22	32193102	32193103	chr22:32193103:C:T	rs8135276	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr22	32261505	32261506	chr22:32261506:T:C	rs5994517	T	C	N	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr22	32266586	32266587	chr22:32266587:C:T	rs59016399	C	T	c	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr22	32284274	32284275	chr22:32284275:G:A	rs12158623	G	A	g	Sox3.mouse_HMG_2	3	1	-	3.459360668959927	-1.3974952062622925	AATCTATTTTAATGATA
chr22	32512750	32512751	chr22:32512751:T:C	rs1056484	T	C	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr22	32534663	32534664	chr22:32534664:G:A	rs116712337	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr22	32643504	32643505	chr22:32643505:T:G	rs142629092	T	G	T	Sox3.mouse_HMG_2	10	1	-	0.669477118701346	-6.239277660613874	GATCTCTTACAGTGATT
chr22	32735368	32735369	chr22:32735369:G:A	rs3788497	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr22	32761180	32761181	chr22:32761181:T:C	rs9606991	T	C	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr22	32761181	32761182	chr22:32761182:G:A	rs9606992	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr22	32836559	32836560	chr22:32836560:T:C	rs8142834	T	C	C	Sox3.mouse_HMG_2	1	1	+	9.073561349056156	9.053343371765513	CTTCAGTGCTATTGATT
chr22	32977340	32977341	chr22:32977341:G:A	rs73162032	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr22	32998081	32998082	chr22:32998082:C:T	rs133931	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr22	33035178	33035179	chr22:33035179:G:A	rs8138938	G	A	A	Sox3.mouse_HMG_2	7	1	+	7.297540205475602	0.6687187103875442	TAACAATGATAATGATG
chr22	33105908	33105909	chr22:33105909:A:G	rs5754430	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr22	33525262	33525263	chr22:33525263:T:C	rs5998994	T	C	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr22	33626984	33626985	chr22:33626985:T:C	rs240589	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr22	33792958	33792959	chr22:33792959:T:C	rs57936677	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr22	34395745	34395746	chr22:34395746:T:C	rs34045827	T	C	T	Sox3.mouse_HMG_2	15	1	-	3.372848602273947	2.939111151012606	GCTCAATGCTATTATAT
chr22	34494005	34494006	chr22:34494006:T:C	rs205241	T	C	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr22	34557811	34557812	chr22:34557812:G:A	rs9610045	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr22	34854495	34854496	chr22:34854496:A:G	rs7285148	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr22	35149921	35149922	chr22:35149922:A:C	rs134265	A	C	A	Sox3.mouse_HMG_2	4	1	+	0.6129734834039045	-6.295101744389154	TATCAAAGGTGGTGAAT
chr22	35406667	35406668	chr22:35406668:C:G	rs2307340	C	G	C	Sox3.mouse_HMG_2	11	1	-	0.37696489460653887	-4.926887127439972	TGGCAATGTTGGTGAGG
chr22	35407607	35407608	chr22:35407608:A:G	rs4645766	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr22	35444672	35444673	chr22:35444673:G:A	rs28450480	G	A	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr22	35485487	35485488	chr22:35485488:T:C	rs28688703	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr22	35498388	35498389	chr22:35498389:C:T	rs117923678	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.32330480917149	-3.7283336950148223	GTTCCATGTCATTGGCT
chr22	35498400	35498401	chr22:35498401:A:G	rs7291777	A	G	G	Sox3.mouse_HMG_2	1	1	-	2.32330480917149	2.3030868318808446	GTTCCATGTCATTGGCT
chr22	35622394	35622395	chr22:35622395:A:G	rs8136969	A	G	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr22	35910335	35910336	chr22:35910336:C:T	rs145516367	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr22	36145676	36145677	chr22:36145677:G:T	rs1807672	G	T	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr22	36265599	36265600	chr22:36265600:G:A	rs136176	G	A	a	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr22	36528107	36528108	chr22:36528108:C:A	rs34387030	C	A	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr22	36734566	36734567	chr22:36734567:A:G	rs147897770	A	G	A	Sox3.mouse_HMG_2	15	1	-	3.937820199842446	0.15802078233665062	AATCAATGTCAGTCTTC
chr22	36856757	36856758	chr22:36856758:G:C	rs6000452	G	C	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr22	36880242	36880243	chr22:36880243:C:A	rs5750326	C	A	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr22	36893142	36893143	chr22:36893143:A:G	rs73883946	A	G	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr22	36933593	36933594	chr22:36933594:G:A	rs77811187	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr22	36933633	36933634	chr22:36933634:T:C	rs11705394	T	C	t	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr22	36950571	36950572	chr22:36950572:G:A	rs9622514	G	A	g	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr22	36950607	36950608	chr22:36950608:G:A	rs9622515	G	A	g	Sox3.mouse_HMG_2	16	1	+	8.27349315847884	8.061918731993588	AGTCAATGTCACTGATG
chr22	36959439	36959440	chr22:36959440:A:G	rs66918193	A	G	A	Sox3.mouse_HMG_2	15	1	-	2.278263214093041	-1.5015362034127546	GCAGAATGTCAGTGGTT
chr22	36959457	36959458	chr22:36959458:T:C	rs73158170	T	C	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr22	36986270	36986271	chr22:36986271:A:G	rs77827656	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.6991342117560837	-2.9852399877042513	GTTCTATGTTATAGATG
chr22	36986276	36986277	chr22:36986277:T:C	rs9610622	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.6991342117560837	-2.6901472226218055	GTTCTATGTTATAGATG
chr22	37051377	37051378	chr22:37051378:G:C	rs74844925	G	C	G	Sox3.mouse_HMG_2	7	1	+	3.439233714709533	-3.1895877803785244	GGTCAATGCTATGGGGA
chr22	37193677	37193678	chr22:37193678:G:A	rs189810126	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr22	37228894	37228895	chr22:37228895:C:T	rs72550751	C	T	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr22	37279868	37279869	chr22:37279869:A:C	rs142669033	A	C	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr22	37295576	37295577	chr22:37295577:A:G	rs2269589	A	G	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr22	37354306	37354307	chr22:37354307:T:C	rs4821636	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr22	37354308	37354309	chr22:37354309:T:C	rs2899289	T	C	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr22	37432885	37432886	chr22:37432886:C:T	rs111847859	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr22	37711954	37711955	chr22:37711955:C:T	rs5756784	C	T	T	Sox3.mouse_HMG_2	0	1	+	1.1845712480026482	0.6994362337485392	CGTCAATGCCTGTGGAG
chr22	37904959	37904960	chr22:37904960:A:T	rs4821723	A	T	T	Sox3.mouse_HMG_2	16	1	-	6.351705471877393	5.776409355758197	CATAAATTCTATTGACT
chr22	37932589	37932590	chr22:37932590:A:G	rs34834842	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr22	37999876	37999877	chr22:37999877:G:A	rs115953595	G	A	G	Sox3.mouse_HMG_2	0	1	+	1.967013070287687	0.27052077658502477	GATTATTGTTATTGGAG
chr22	38012841	38012842	chr22:38012842:A:G	rs7290247	A	G	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr22	38135527	38135528	chr22:38135528:G:A	rs867435302	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr22	38166417	38166418	chr22:38166418:A:G	rs6001035	A	G	A	Sox3.mouse_HMG_2	15	1	-	8.185350304940812	4.405550887435016	TCTAAATTTTATTGATT
chr22	38170323	38170324	chr22:38170324:C:T	rs132991	C	T	C	Sox3.mouse_HMG_2	6	1	+	-0.007584631311971846	6.3816968030659185	GATCATCGGCATTGGTC
chr22	38196959	38196960	chr22:38196960:G:A	rs2413505	G	A	G	Sox3.mouse_HMG_2	13	1	+	0.626520449399926	-5.4251180547863855	CTCCAATGCCAGTGCTG
chr22	38204947	38204948	chr22:38204948:A:G	rs73154441	A	G	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr22	38699647	38699648	chr22:38699648:T:C	rs149593440	T	C	T	Sox3.mouse_HMG_2	9	1	+	10.622291476490256	9.929638933618296	GATAAATGGTAGTGATT
chr22	38704640	38704641	chr22:38704641:A:G	rs41280833	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr22	38770255	38770256	chr22:38770256:G:A	rs117584534	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr22	39003732	39003733	chr22:39003733:T:C	rs4315626	T	C	N	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr22	39008538	39008539	chr22:39008539:G:T	rs146605820	G	T	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr22	39178475	39178476	chr22:39178476:C:T	rs117362372	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr22	39219954	39219955	chr22:39219955:C:T	rs12484319	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr22	39298119	39298120	chr22:39298120:G:A	rs9611138	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr22	39304752	39304753	chr22:39304753:C:T	rs17000979	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr22	39601624	39601625	chr22:39601625:C:T	rs713865	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr22	39629038	39629039	chr22:39629039:C:T	rs136813	C	T	C	Sox3.mouse_HMG_2	5	1	-	1.0020375805056123	7.391319014883502	CCTCAGTGGCAGTGGGG
chr22	39929156	39929157	chr22:39929157:C:T	rs137980	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr22	40208940	40208941	chr22:40208941:T:G	rs4820408	T	G	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr22	40213644	40213645	chr22:40213645:A:G	rs74893831	A	G	A	Sox3.mouse_HMG_2	16	1	+	4.335975869363621	4.547550295848871	TAACAATCACAGTGATA
chr22	40323731	40323732	chr22:40323732:G:C	rs12485008	G	C	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr22	40621420	40621421	chr22:40621421:C:T	rs6001981	C	T	T	Sox3.mouse_HMG_2	8	1	-	1.5814438179324721	0.36265343318797577	TCTCTATGGTTTTGATT
chr22	41074308	41074309	chr22:41074309:A:G	rs5758212	A	G	A	Sox3.mouse_HMG_2	14	1	+	4.019071012762928	0.7010047429913262	GAGCAATGATCTTGATC
chr22	41445730	41445731	chr22:41445731:C:T	rs10212032	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr22	41670928	41670929	chr22:41670929:C:T	rs9306354	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr22	41826462	41826463	chr22:41826463:C:A	rs191226652	C	A	C	Sox3.mouse_HMG_2	1	1	-	6.762355781652446	6.073520164618608	TGTCAAGGGCAGTGATG
chr22	41826469	41826470	chr22:41826470:T:C	rs150841972	T	C	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr22	42022105	42022106	chr22:42022106:T:A	rs9607869	T	A	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr22	42045115	42045116	chr22:42045116:C:T	rs181587274	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr22	42314362	42314363	chr22:42314363:G:A	rs139621215	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr22	42687038	42687039	chr22:42687039:C:A	rs130389	C	A	A	Sox3.mouse_HMG_2	3	1	+	7.345099189961593	0.4444289507026879	TGTCAATGTTCTTGAAG
chr22	42701507	42701508	chr22:42701508:G:A	rs5758873	G	A	g	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr22	42774875	42774876	chr22:42774876:C:T	rs7285149	C	T	t	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr22	42784411	42784412	chr22:42784412:A:C	rs5758938	A	C	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr22	42797712	42797713	chr22:42797713:G:A	rs9611907	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr22	43002955	43002956	chr22:43002956:C:T	rs738378	C	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr22	43018721	43018722	chr22:43018722:C:T	rs118178599	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr22	43371072	43371073	chr22:43371073:A:G	rs695396	A	G	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr22	43510891	43510892	chr22:43510892:C:T	rs13054573	C	T	.	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr22	43890435	43890436	chr22:43890436:T:C	rs713831	T	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr22	43915820	43915821	chr22:43915821:G:A	rs9917616	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr22	44409096	44409097	chr22:44409097:G:A	rs79220932	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr22	44448729	44448730	chr22:44448730:G:A	rs959301079	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr22	44525415	44525416	chr22:44525416:C:T	rs62231499	C	T	c	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr22	44538106	44538107	chr22:44538107:C:T	rs2076096	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr22	44538128	44538129	chr22:44538129:G:C	rs2076097	G	C	G	Sox3.mouse_HMG_2	1	1	-	4.918860244797853	5.627913839122336	TCTCATTGGCATTGAAA
chr22	44552027	44552028	chr22:44552028:A:G	rs2349628	A	G	G	Sox3.mouse_HMG_2	6	1	-	2.456300218935392	-3.932981215442497	TAGCAATGCCAGGGATC
chr22	44558576	44558577	chr22:44558577:A:G	rs73889506	A	G	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr22	44721916	44721917	chr22:44721917:G:C	rs763218	G	C	c	Sox3.mouse_HMG_2	9	1	-	0.8729737260639642	-4.418354990948395	GGCCACTTTCAGTGATG
chr22	44728469	44728470	chr22:44728470:C:T	rs743895	C	T	c	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr22	44796740	44796741	chr22:44796741:A:G	rs9626245	A	G	a	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr22	44796779	44796780	chr22:44796780:G:A	rs1001728	G	A	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr22	44838858	44838859	chr22:44838859:A:G	rs4823393	A	G	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr22	44838874	44838875	chr22:44838875:A:G	rs4823261	A	G	a	Sox3.mouse_HMG_2	10	1	+	1.9718787359406376	-4.936876043374584	CGTCAGTGCCATTGGCT
chr22	44857891	44857892	chr22:44857892:C:T	rs7291353	C	T	c	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr22	44857892	44857893	chr22:44857893:G:A	rs71328677	G	A	g	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr22	45010509	45010510	chr22:45010510:A:G	rs1997890	A	G	A	Sox3.mouse_HMG_2	9	1	-	5.286225525784144	4.5935729829121845	GATCAATTTTCTTGCTG
chr22	45041210	45041211	chr22:45041211:G:T	rs132045	G	T	t	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr22	45136784	45136785	chr22:45136785:A:G	rs132817	A	G	a	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr22	45158925	45158926	chr22:45158926:T:C	rs866223223	T	C	T	Sox3.mouse_HMG_2	12	1	+	1.530749240410034	-4.520217897520783	GCTCAATATTAGTGGCG
chr22	45158928	45158929	chr22:45158929:C:T	rs73432244	C	T	C	Sox3.mouse_HMG_2	15	1	+	1.530749240410034	5.31054865791583	GCTCAATATTAGTGGCG
chr22	45158931	45158932	chr22:45158932:T:G	chr22:45158932:T:G	T	G	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr22	45158949	45158950	chr22:45158950:C:T	rs12483927	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr22	45204876	45204877	chr22:45204877:A:G	rs541401632	A	G	A	Sox3.mouse_HMG_2	9	1	-	3.0805250779521915	2.387872535080232	TATTAATGCTAGTAAAT
chr22	45469749	45469750	chr22:45469750:T:A	rs2072771	T	A	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr22	45483517	45483518	chr22:45483518:G:C	rs738221	G	C	C	Sox3.mouse_HMG_2	11	1	+	2.8942356859659384	-2.409616336080573	GAACAATTGTTGTGAGA
chr22	45540291	45540292	chr22:45540292:G:T	rs136754	G	T	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr22	45603118	45603119	chr22:45603119:G:A	rs181362131	G	A	G	Sox3.mouse_HMG_2	9	1	-	1.3731836031905233	2.065836146062483	GGACGATGGCAGTGACT
chr22	45778176	45778177	chr22:45778177:C:T	rs135991	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr22	45864135	45864136	chr22:45864136:C:T	chr22:45864136:C:T	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr22	45864138	45864139	chr22:45864139:G:A	rs188055281	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr22	45880687	45880688	chr22:45880688:C:G	rs79491787	C	G	C	Sox3.mouse_HMG_2	9	1	-	4.808321512011243	10.099650229023606	AATCAATGGGATCGATG
chr22	45993929	45993930	chr22:45993930:G:A	rs28394489	G	A	a	Sox3.mouse_HMG_2	1	1	+	2.953881612474209	4.960269554493666	TGACAATGATGGTGATG
chr22	45993963	45993964	chr22:45993964:A:G	rs866546368	A	G	a	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr22	45995814	45995815	chr22:45995815:C:T	rs28419158	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr22	46084369	46084370	chr22:46084370:A:G	rs73456704	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr22	46572491	46572492	chr22:46572492:G:A	rs738236	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr22	46625305	46625306	chr22:46625306:T:G	rs138481	T	G	T	Sox3.mouse_HMG_2	6	1	+	1.0998380940388777	-5.8082371337541785	CCTCACTGTTAATGAGT
chr22	46625328	46625329	chr22:46625329:A:G	rs9615396	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr22	46673303	46673304	chr22:46673304:G:A	rs35549384	G	A	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr22	46679564	46679565	chr22:46679565:C:T	rs3179	C	T	T	Sox3.mouse_HMG_2	1	1	-	0.39088397690641025	2.3972719189258687	CGTCTAGTTCAGTGATT
chr22	46775558	46775559	chr22:46775559:T:C	rs801628	T	C	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr22	46929296	46929297	chr22:46929297:G:A	rs2064165	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr22	47061963	47061964	chr22:47061964:A:C	rs9941946	A	C	C	Sox3.mouse_HMG_2	10	1	+	-0.17845038963651616	-7.087205168951734	GGTGCATGCCAGTGATC
chr22	47064401	47064402	chr22:47064402:G:T	rs7287675	G	T	g	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr22	47164613	47164614	chr22:47164614:C:T	rs186157435	C	T	C	Sox3.mouse_HMG_2	15	1	+	0.7150836287597914	4.4948830462655875	GCTGAATGTCAGTGTCG
chr22	47197662	47197663	chr22:47197663:A:G	rs9626698	A	G	A	Sox3.mouse_HMG_2	2	1	-	3.152895049980697	-3.2140022565450455	TGTTAATGTTATTGCAA
chr22	47236923	47236924	chr22:47236924:A:T	rs4823621	A	T	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr22	47238301	47238302	chr22:47238302:C:G	rs9615143	C	G	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr22	47374465	47374466	chr22:47374466:A:G	rs58719689	A	G	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr22	47476792	47476793	chr22:47476793:G:A	rs2157191	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr22	47892018	47892019	chr22:47892019:A:T	rs9615660	A	T	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr22	47963190	47963191	chr22:47963191:A:G	rs6007768	A	G	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr22	47996316	47996317	chr22:47996317:C:T	rs11090805	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr22	48115135	48115136	chr22:48115136:C:T	rs73184781	C	T	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr22	48125616	48125617	chr22:48125617:G:A	rs117068343	G	A	g	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr22	48272221	48272222	chr22:48272222:A:G	rs133590	A	G	G	Sox3.mouse_HMG_2	5	1	+	4.783931601317159	-1.6053498330607308	ACACAATGCTATTGGAG
chr22	48275289	48275290	chr22:48275290:A:G	rs6007822	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr22	48275322	48275323	chr22:48275323:T:C	rs9615304	T	C	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr22	48313753	48313754	chr22:48313754:G:A	rs2879244	G	A	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr22	48340833	48340834	chr22:48340834:G:C	rs732348	G	C	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr22	48415004	48415005	chr22:48415005:C:T	rs73171414	C	T	C	Sox3.mouse_HMG_2	0	1	+	2.6121430744604592	2.1270080602063506	CATCAAGGTTGGTGATC
chr22	48478497	48478498	chr22:48478498:C:T	rs13056230	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr22	48502068	48502069	chr22:48502069:G:A	rs6008741	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr22	48607000	48607001	chr22:48607001:C:T	rs28533693	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr22	48607008	48607009	chr22:48607009:A:C	rs28410043	A	C	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr22	48657742	48657743	chr22:48657743:G:T	rs9617413	G	T	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr22	48705150	48705151	chr22:48705151:G:C	rs12159111	G	C	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr22	48819152	48819153	chr22:48819153:G:A	rs12162709	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr22	48820407	48820408	chr22:48820408:G:A	rs75645035	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr22	48820417	48820418	chr22:48820418:G:A	rs996634562	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr22	48829327	48829328	chr22:48829328:A:G	rs7288714	A	G	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr22	48863246	48863247	chr22:48863247:C:T	rs28740796	C	T	-	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr22	48872264	48872265	chr22:48872265:C:T	rs28636038	C	T	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr22	48921549	48921550	chr22:48921550:A:C	chr22:48921550:A:C	A	C	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr22	49026260	49026261	chr22:49026261:G:A	rs5769384	G	A	A	Sox3.mouse_HMG_2	5	1	-	2.2291771575304926	2.2291771575304926	TCACACTTTTATTGAAG
chr22	49026262	49026263	chr22:49026263:G:A	rs5769385	G	A	A	Sox3.mouse_HMG_2	3	1	-	2.2291771575304926	-2.627678717691727	TCACACTTTTATTGAAG
chr22	49031122	49031123	chr22:49031123:A:G	rs9616222	A	G	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr22	49067852	49067853	chr22:49067853:G:A	rs79123107	G	A	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr22	49110184	49110185	chr22:49110185:T:C	rs79458650	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr22	49128443	49128444	chr22:49128444:A:T	rs5769920	A	T	A	Sox3.mouse_HMG_2	14	1	+	2.351636084145455	-1.6677454396031903	TTGCAAGTTCATTGATT
chr22	49140490	49140491	chr22:49140491:A:G	rs62221359	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr22	49140664	49140665	chr22:49140665:G:A	rs5769932	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr22	49298791	49298792	chr22:49298792:G:C	rs5770213	G	C	G	Sox3.mouse_HMG_2	0	1	+	4.579227770283117	4.274594252758927	GTTCAATTCCATTAGTT
chr22	49321419	49321420	chr22:49321420:A:T	rs848769	A	T	T	Sox3.mouse_HMG_2	11	1	-	4.076138146626847	-1.8758681591202635	GTTCAATTATCTTGAAA
chr22	49337270	49337271	chr22:49337271:G:A	rs5769568	G	A	g	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr22	49337291	49337292	chr22:49337292:A:G	rs11702899	A	G	a	Sox3.mouse_HMG_2	8	1	+	8.50189504266449	9.720685427408988	GGTGAATTATATTGATT
chr22	49337313	49337314	chr22:49337314:C:G	rs848740	C	G	c	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr22	49429489	49429490	chr22:49429490:C:T	rs533519985	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr22	49447829	49447830	chr22:49447830:A:G	rs8138283	A	G	A	Sox3.mouse_HMG_2	12	1	-	1.2471833935093606	-4.803783744421456	GTTCAAGTTCACTGATG
chr22	49516057	49516058	chr22:49516058:C:T	rs6520122	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr22	49704684	49704685	chr22:49704685:C:T	rs34296882	C	T	C	Sox3.mouse_HMG_2	3	1	+	1.245321135865522	-3.611534739356697	GCTCATTTGTCTTGATT
chr22	49760605	49760606	chr22:49760606:A:G	rs114110755	A	G	a	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr22	49765423	49765424	chr22:49765424:A:G	rs138809	A	G	a	Sox3.mouse_HMG_2	5	1	+	5.926721822561417	-0.4625596118164737	TATCCATGTCAGTGTTT
chr22	49774003	49774004	chr22:49774004:T:C	rs4468	T	C	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr22	49897954	49897955	chr22:49897955:G:A	rs73443931	G	A	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr22	50289352	50289353	chr22:50289353:G:A	rs62241207	G	A	G	Sox3.mouse_HMG_2	1	1	+	6.536867320018863	8.54325526203832	CGTGAATGGCATTGAGA
chr22	50289362	50289363	chr22:50289363:T:C	rs28573806	T	C	C	Sox3.mouse_HMG_2	11	1	+	6.536867320018863	-0.14750687944147306	CGTGAATGGCATTGAGA
chr22	50289364	50289365	chr22:50289365:G:A	rs145322724	G	A	G	Sox3.mouse_HMG_2	13	1	+	6.536867320018863	0.4852288158325509	CGTGAATGGCATTGAGA
chr22	50542784	50542785	chr22:50542785:C:T	rs5770772	C	T	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr3	292823	292824	chr3:292824:T:C	rs11715973	T	C	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr3	399869	399870	chr3:399870:A:T	rs2387188	A	T	A	Sox3.mouse_HMG_2	4	1	+	5.994299931581728	-0.9137752962113289	GGTCAATTTTGTTGGTG
chr3	663609	663610	chr3:663610:T:G	rs2627977	T	G	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr3	1087511	1087512	chr3:1087512:G:C	rs73103453	G	C	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr3	1190539	1190540	chr3:1190540:T:A	rs2130279	T	A	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr3	1249677	1249678	chr3:1249678:T:A	rs17036386	T	A	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr3	1270057	1270058	chr3:1270058:A:G	rs7621594	A	G	G	Sox3.mouse_HMG_2	8	1	-	5.345546456666085	4.091124490510415	GCACAATGTTATTGTCA
chr3	1395199	1395200	chr3:1395200:A:G	rs17038614	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	1907909	1907910	chr3:1907910:T:G	rs9821217	T	G	G	Sox3.mouse_HMG_2	4	1	-	4.468514280076836	-2.43956094771622	TTTCAATTCCATTTAAT
chr3	2166770	2166771	chr3:2166771:C:G	rs114657873	C	G	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr3	2166808	2166809	chr3:2166809:A:G	rs62246968	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr3	2598278	2598279	chr3:2598279:C:G	rs12496271	C	G	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr3	2660352	2660353	chr3:2660353:C:A	rs17018137	C	A	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr3	2724736	2724737	chr3:2724737:A:G	rs1516383	A	G	G	Sox3.mouse_HMG_2	16	1	+	3.461378140995075	3.6729525674803254	GTTTAATGTCAGTGGGA
chr3	2992671	2992672	chr3:2992672:A:C	rs973593	A	C	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr3	2992689	2992690	chr3:2992690:A:G	rs973594	A	G	A	Sox3.mouse_HMG_2	10	1	+	1.9057280832622858	-5.003026696052933	CCTCACTCCTATTGATT
chr3	3038824	3038825	chr3:3038825:C:T	rs7648232	C	T	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr3	3038842	3038843	chr3:3038843:C:T	rs163543	C	T	T	Sox3.mouse_HMG_2	11	1	-	2.460919689476484	-2.1105644388568012	ACTCACTTTCAGTGAGT
chr3	3100108	3100109	chr3:3100109:C:T	rs6442777	C	T	C	Sox3.mouse_HMG_2	7	1	-	1.8757780948763192	-4.753043400211737	CAACAAGGCCAGTGTTT
chr3	3357625	3357626	chr3:3357626:A:C	rs1396429	A	C	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr3	3359654	3359655	chr3:3359655:A:G	rs6782604	A	G	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr3	3420712	3420713	chr3:3420713:C:A	rs149323435	C	A	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr3	3429726	3429727	chr3:3429727:C:T	rs13063998	C	T	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr3	3503731	3503732	chr3:3503732:C:T	rs10212196	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.507615620550397	-3.5440228836359147	CATCAAAGTTACTGAGA
chr3	3655188	3655189	chr3:3655189:T:C	rs9873276	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.280551894433314	-2.1087295399445765	AGTAAATGGTATTGTTT
chr3	3927416	3927417	chr3:3927417:G:A	rs977392	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr3	4198162	4198163	chr3:4198163:C:T	rs1444058	C	T	T	Sox3.mouse_HMG_2	1	1	+	2.8431887319449114	2.863406709235556	ACTCATTGGCAGTGAAG
chr3	4322865	4322866	chr3:4322866:T:A	rs74927171	T	A	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr3	4351101	4351102	chr3:4351102:T:C	rs11928114	T	C	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr3	4351134	4351135	chr3:4351135:G:C	rs7638573	G	C	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr3	4431527	4431528	chr3:4431528:G:A	rs711653	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr3	4431554	4431555	chr3:4431555:C:T	rs6788388	C	T	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr3	4507283	4507284	chr3:4507284:A:G	rs114506187	A	G	A	Sox3.mouse_HMG_2	10	1	+	2.9983446811854586	-3.9104100981297627	CCCCAATGTTATTGTGA
chr3	4767018	4767019	chr3:4767019:G:A	rs2291863	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr3	4827905	4827906	chr3:4827906:A:G	rs3805025	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.570738996664267	-3.1136352027960696	CAGCACTGTTATTGACT
chr3	4867622	4867623	chr3:4867623:G:C	rs28698158	G	C	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr3	4959462	4959463	chr3:4959463:G:C	rs34892180	G	C	G	Sox3.mouse_HMG_2	8	1	-	6.383685707272502	6.824469740423959	CATCGATTCTAGTGAAA
chr3	5029613	5029614	chr3:5029614:G:A	rs9857595	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr3	5248764	5248765	chr3:5248765:T:C	rs466718	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.4894309227399947	-2.899850511637895	AATCAATTCTAGTTTTG
chr3	6055885	6055886	chr3:6055886:C:T	rs28534488	C	T	T	Sox3.mouse_HMG_2	8	1	-	4.6724149981227985	3.4536246133783024	GAATAATGGCAGTGTTT
chr3	6080613	6080614	chr3:6080614:A:G	rs1156715284	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr3	6133127	6133128	chr3:6133128:C:T	rs9311801	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr3	6173604	6173605	chr3:6173605:C:T	rs7636014	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr3	6642796	6642797	chr3:6642797:A:T	rs191605	A	T	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr3	7100539	7100540	chr3:7100540:T:C	rs9837834	T	C	T	Sox3.mouse_HMG_2	16	1	+	3.4759089414245463	1.8729158917640953	GTTTAATGTTAATGAGT
chr3	7285745	7285746	chr3:7285746:C:A	chr3:7285746:C:A	C	A	C	Sox3.mouse_HMG_2	14	1	-	2.0594910132579005	1.358175759280857	GATCAAGGTTAGAGGTT
chr3	7475602	7475603	chr3:7475603:T:C	rs1391902	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.903347498962654	-0.7810267004976814	CGTCACTGTTATTGTTA
chr3	7700724	7700725	chr3:7700725:G:A	rs3828422	G	A	G	Sox3.mouse_HMG_2	8	1	+	2.3735510030307925	1.1547606182862955	GATGAAAGGCATTGAAA
chr3	7897867	7897868	chr3:7897868:C:T	rs36084967	C	T	C	Sox3.mouse_HMG_2	13	1	-	6.530388515031031	0.4787500108447191	CAGCAATGTGAGTGATG
chr3	8041074	8041075	chr3:8041075:C:G	rs12632604	C	G	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr3	8041114	8041115	chr3:8041115:C:A	rs28532864	C	A	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr3	8311642	8311643	chr3:8311643:C:A	chr3:8311643:C:A	C	A	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr3	8445804	8445805	chr3:8445805:T:C	rs1161149	T	C	C	Sox3.mouse_HMG_2	8	1	+	3.5987235003768583	2.3443015342211884	AATCAATTTTCTTCATT
chr3	8507198	8507199	chr3:8507199:T:C	rs931686	T	C	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr3	8900752	8900753	chr3:8900753:C:G	rs250411	C	G	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr3	8900921	8900922	chr3:8900922:G:T	rs373090	G	T	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr3	8937344	8937345	chr3:8937345:C:T	rs78587561	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr3	8937445	8937446	chr3:8937446:G:A	rs181922716	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr3	8963065	8963066	chr3:8963066:C:T	rs45585931	C	T	C	Sox3.mouse_HMG_2	3	1	+	4.920733316869314	0.06387744164709346	TCTCCATGTTATTGTTG
chr3	8999508	8999509	chr3:8999509:T:C	rs62245082	T	C	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	9169682	9169683	chr3:9169683:A:G	rs986120	A	G	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr3	9214628	9214629	chr3:9214629:T:C	rs391466	T	C	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr3	10279832	10279833	chr3:10279833:G:A	rs10285	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr3	10442492	10442493	chr3:10442493:A:G	rs34863	A	G	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr3	10547093	10547094	chr3:10547094:A:C	rs6442181	A	C	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr3	10551460	10551461	chr3:10551461:C:T	rs553352558	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr3	10553407	10553408	chr3:10553408:T:C	rs1009398193	T	C	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr3	10570949	10570950	chr3:10570950:G:C	rs35944049	G	C	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr3	10719432	10719433	chr3:10719433:G:A	rs76037015	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr3	10833432	10833433	chr3:10833433:G:A	rs1905756	G	A	G	Sox3.mouse_HMG_2	7	1	+	9.334581259895899	2.705759764807841	CATCAATGCCAGGGATG
chr3	10957033	10957034	chr3:10957034:C:A	rs80059062	C	A	C	Sox3.mouse_HMG_2	3	1	+	2.3599681675756137	-4.5407020716832935	AATCAATGGCAGGCATT
chr3	11050199	11050200	chr3:11050200:G:T	rs3856788	G	T	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr3	11350670	11350671	chr3:11350671:A:G	rs117138184	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr3	11567839	11567840	chr3:11567840:A:G	rs2447602	A	G	A	Sox3.mouse_HMG_2	10	1	+	6.323180343914618	-0.5855744354006036	ATACAATTTTATTGTTA
chr3	11588777	11588778	chr3:11588778:G:T	rs12633841	G	T	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr3	11600190	11600191	chr3:11600191:A:C	rs73025163	A	C	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	11703424	11703425	chr3:11703425:C:G	rs36068197	C	G	C	Sox3.mouse_HMG_2	11	1	-	7.231089744454031	1.9272377224075192	CCTCACTGGTAGTGATG
chr3	11944166	11944167	chr3:11944167:C:G	rs12629709	C	G	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr3	12489921	12489922	chr3:12489922:G:A	rs12495784	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	12513993	12513994	chr3:12513994:C:T	rs116103198	C	T	C	Sox3.mouse_HMG_2	7	1	-	3.095096130846597	-3.533725364241459	GTTCAATGCTTGTGTTG
chr3	12973493	12973494	chr3:12973494:T:C	rs12492009	T	C	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	13277159	13277160	chr3:13277160:C:T	rs630814	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	13277203	13277204	chr3:13277204:A:C	rs191561006	A	C	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr3	13546626	13546627	chr3:13546627:T:C	rs55639070	T	C	C	Sox3.mouse_HMG_2	11	1	+	3.1102863811522234	-3.574087818308112	AATCAAAGCCATTGGGT
chr3	13560123	13560124	chr3:13560124:G:C	chr3:13560124:G:C	G	C	G	Sox3.mouse_HMG_2	9	1	-	2.098537033838177	-3.192791683174183	GATTAATGTCCGTGACT
chr3	13623425	13623426	chr3:13623426:T:C	rs1562807	T	C	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr3	13623435	13623436	chr3:13623436:T:C	rs3773260	T	C	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr3	13659366	13659367	chr3:13659367:T:C	rs13078230	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.7895606374243487	-2.599720796953541	AAATAATGTCAGTGTTT
chr3	13745913	13745914	chr3:13745914:A:G	rs4684154	A	G	a	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	13754179	13754180	chr3:13754180:T:C	rs7634577	T	C	T	Sox3.mouse_HMG_2	2	1	+	3.837113279337952	-2.529784027187796	CATCAATGGTATTTTCA
chr3	13857120	13857121	chr3:13857121:C:T	rs9819887	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	13929997	13929998	chr3:13929998:C:T	rs6776735	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr3	14147051	14147052	chr3:14147052:T:C	rs568513655	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr3	14201031	14201032	chr3:14201032:T:A	rs73815319	T	A	T	Sox3.mouse_HMG_2	15	1	+	3.643195396479757	1.3398057030210724	GAGAAATGTTATTGTTT
chr3	14223546	14223547	chr3:14223547:A:G	rs4685086	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.30870480489192	-2.3756693945684164	AATCAACTTTATTGGAA
chr3	14330858	14330859	chr3:14330859:C:T	rs9840551	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr3	14330862	14330863	chr3:14330863:C:T	rs73817745	C	T	C	Sox3.mouse_HMG_2	0	1	+	3.1216229799168738	2.636487965662765	CATCCATGCCAGTGGGT
chr3	14397135	14397136	chr3:14397136:T:C	rs6442452	T	C	c	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr3	14464405	14464406	chr3:14464406:C:A	rs6808613	C	A	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr3	14787773	14787774	chr3:14787774:T:C	rs13080265	T	C	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr3	14844716	14844717	chr3:14844717:A:G	rs1687327	A	G	A	Sox3.mouse_HMG_2	11	1	-	1.8603724777482349	-4.8240017217121	GCTCCATTTCATAGATG
chr3	14948871	14948872	chr3:14948872:G:T	rs4093173	G	T	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr3	14948877	14948878	chr3:14948878:G:A	rs75343838	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr3	15122227	15122228	chr3:15122228:A:G	rs6794194	A	G	G	Sox3.mouse_HMG_2	15	1	-	2.1133598390612387	-1.6664395784445571	GCACAAAGTTAGTGGTT
chr3	15299155	15299156	chr3:15299156:T:C	rs6442511	T	C	C	Sox3.mouse_HMG_2	11	1	+	2.760914323707868	-3.923459875752465	TTTCAGCGTCATTGATT
chr3	15519207	15519208	chr3:15519208:T:C	rs114071457	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr3	16113961	16113962	chr3:16113962:A:G	rs62233456	A	G	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr3	16227466	16227467	chr3:16227467:T:A	rs15767	T	A	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr3	16227478	16227479	chr3:16227479:C:A	rs14576	C	A	C	Sox3.mouse_HMG_2	3	1	+	4.80363471839065	-2.097035520868259	GATCAATGCTGTGGATG
chr3	16271056	16271057	chr3:16271057:C:T	rs842259	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr3	16304280	16304281	chr3:16304281:G:C	rs189763180	G	C	G	Sox3.mouse_HMG_2	16	1	+	2.3329234452894285	1.0936520852629235	GGACAAAGGCATTGGTG
chr3	16463049	16463050	chr3:16463050:C:T	rs17042294	C	T	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr3	16633619	16633620	chr3:16633620:A:C	rs7647846	A	C	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr3	16708433	16708434	chr3:16708434:C:T	rs74931909	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr3	16740104	16740105	chr3:16740105:G:C	rs9817635	G	C	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr3	16759644	16759645	chr3:16759645:G:A	rs116583336	G	A	g	Sox3.mouse_HMG_2	11	1	+	4.627238561022164	0.05575443268887874	TTTCAATGGCAGAGAAG
chr3	16960174	16960175	chr3:16960175:C:A	rs17042938	C	A	C	Sox3.mouse_HMG_2	7	1	-	3.066653993587585	1.94076277974234	TCTGAATGATAGTGGTG
chr3	17022897	17022898	chr3:17022898:G:T	rs79233455	G	T	G	Sox3.mouse_HMG_2	8	1	+	3.4849713522013244	4.298609285205537	CATCTATTGCATTCATT
chr3	17193997	17193998	chr3:17193998:G:A	rs2596656	G	A	A	Sox3.mouse_HMG_2	13	1	+	3.23874711363717	-2.8128913905491415	TATCAATTTTTTCGATC
chr3	17233587	17233588	chr3:17233588:T:C	rs113993660	T	C	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr3	17353122	17353123	chr3:17353123:A:G	rs1374197	A	G	G	Sox3.mouse_HMG_2	11	1	-	4.204408678311669	-2.4799655211486655	TATCAGTGCCATGGATT
chr3	17707684	17707685	chr3:17707685:C:T	rs4566567	C	T	T	Sox3.mouse_HMG_2	3	1	+	5.117191349201195	0.26033547397897366	GGTCAATGCCAGTCAAA
chr3	17850416	17850417	chr3:17850417:T:G	rs76890050	T	G	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr3	17908534	17908535	chr3:17908535:C:T	rs12492931	C	T	T	Sox3.mouse_HMG_2	0	1	+	6.2990679207283	5.813932906474191	CCTCAATGTCATTTGTT
chr3	18658484	18658485	chr3:18658485:G:T	rs11714395	G	T	G	Sox3.mouse_HMG_2	0	1	+	3.103040738153165	2.3132722063748683	GATCAATGTTTTTTGTT
chr3	19757797	19757798	chr3:19757798:T:G	rs4858093	T	G	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr3	20073043	20073044	chr3:20073044:T:C	rs6803231	T	C	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr3	20340393	20340394	chr3:20340394:A:G	rs1356793	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr3	20752682	20752683	chr3:20752683:A:G	rs904824	A	G	A	Sox3.mouse_HMG_2	8	1	-	2.4129143039902026	1.158492337834533	AATCCATGTTATTGCAG
chr3	20838538	20838539	chr3:20838539:A:G	rs1499003	A	G	A	Sox3.mouse_HMG_2	12	1	-	4.554312387052913	-1.4966547508779033	ATTCTATTTTATTGAGT
chr3	20943008	20943009	chr3:20943009:A:G	rs9863026	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr3	21331416	21331417	chr3:21331417:C:A	rs2661384	C	A	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr3	21331469	21331470	chr3:21331470:A:T	rs1158087	A	T	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr3	21414677	21414678	chr3:21414678:C:T	rs376703	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr3	21414693	21414694	chr3:21414694:T:C	rs7637427	T	C	T	Sox3.mouse_HMG_2	12	1	+	1.897255794974177	-4.1537113429566395	GATGATTGGTAGTGAAG
chr3	21477907	21477908	chr3:21477908:A:G	rs7644446	A	G	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr3	21719453	21719454	chr3:21719454:G:C	rs79003092	G	C	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr3	21735666	21735667	chr3:21735667:T:G	rs13072271	T	G	T	Sox3.mouse_HMG_2	7	1	+	3.6348533384924906	4.760744552337735	CATTAAGTGCAGTGATT
chr3	21747872	21747873	chr3:21747873:G:A	rs78626711	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr3	21752977	21752978	chr3:21752978:G:C	rs185141318	G	C	G	Sox3.mouse_HMG_2	11	1	+	4.751991596889212	-0.5518604251572992	GTTTAATGTTAGTGCTT
chr3	21755223	21755224	chr3:21755224:A:T	rs62236199	A	T	A	Sox3.mouse_HMG_2	1	1	-	4.310033250074618	7.005256809127912	ATACAATTTTATTGCTA
chr3	21920690	21920691	chr3:21920691:G:A	rs8180049	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr3	21920715	21920716	chr3:21920716:T:C	rs8180026	T	C	T	Sox3.mouse_HMG_2	1	1	-	6.087109320616051	4.080721378596592	CATCAATTATATTTACT
chr3	21920732	21920733	chr3:21920733:C:T	rs185404850	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	21944854	21944855	chr3:21944855:A:G	rs549089	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr3	21954536	21954537	chr3:21954537:G:T	rs1486397	G	T	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr3	21954855	21954856	chr3:21954856:G:A	rs1694042	G	A	A	Sox3.mouse_HMG_2	5	1	-	3.292057317894027	3.292057317894027	CTTCACTTTCAGTGGTT
chr3	21991871	21991872	chr3:21991872:T:C	rs6550648	T	C	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr3	22082053	22082054	chr3:22082054:C:G	rs1824976	C	G	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr3	22106214	22106215	chr3:22106215:T:C	rs779183	T	C	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr3	22106508	22106509	chr3:22106509:T:C	rs779180	T	C	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr3	22159547	22159548	chr3:22159548:G:C	rs141551913	G	C	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr3	22361157	22361158	chr3:22361158:T:A	rs559752613	T	A	t	Sox3.mouse_HMG_2	11	1	+	3.7089640787120532	-2.243042227035056	AAACAAATTCATTGAAT
chr3	22424242	22424243	chr3:22424243:T:A	rs11129063	T	A	T	Sox3.mouse_HMG_2	16	1	-	4.082397257028579	4.657693373147775	TATCAATTTTATTCTGA
chr3	22453968	22453969	chr3:22453969:G:A	rs951605	G	A	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	22527455	22527456	chr3:22527456:C:T	rs11921319	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr3	23084948	23084949	chr3:23084949:A:C	rs9821146	A	C	A	Sox3.mouse_HMG_2	2	1	-	5.40007404283172	0.2461993761518289	TTTTAATGTTAGTGTTA
chr3	23130313	23130314	chr3:23130314:C:T	rs73040028	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr3	23543412	23543413	chr3:23543413:G:A	rs9815921	G	A	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr3	23654050	23654051	chr3:23654051:G:A	rs6788396	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr3	23654056	23654057	chr3:23654057:C:T	rs6764779	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr3	23739587	23739588	chr3:23739588:C:G	rs13085556	C	G	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr3	24213025	24213026	chr3:24213026:C:T	rs7632417	C	T	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr3	24213058	24213059	chr3:24213059:C:T	rs746875	C	T	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr3	24416089	24416090	chr3:24416090:C:T	rs1001183730	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	24692245	24692246	chr3:24692246:T:C	rs114968910	T	C	T	Sox3.mouse_HMG_2	12	1	+	2.231165736554413	-3.819801401376403	TGTCACTGCTAATGATA
chr3	24704886	24704887	chr3:24704887:T:C	rs9862855	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr3	24713594	24713595	chr3:24713595:A:G	rs115697825	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.923455709886542	-1.760918489573794	TTTCAGTTTCATTGAGG
chr3	24741817	24741818	chr3:24741818:T:C	rs12715061	T	C	T	Sox3.mouse_HMG_2	11	1	+	7.9547686668683095	1.2703944674079726	GTTCAATGTCATTGTCA
chr3	24741821	24741822	chr3:24741822:C:T	rs73035585	C	T	C	Sox3.mouse_HMG_2	15	1	+	7.9547686668683095	11.734568084374105	GTTCAATGTCATTGTCA
chr3	24765625	24765626	chr3:24765626:T:A	rs55793734	T	A	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr3	24846750	24846751	chr3:24846751:T:C	rs1994909	T	C	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr3	24867891	24867892	chr3:24867892:C:T	rs145891807	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr3	24963312	24963313	chr3:24963313:C:A	rs937267	C	A	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr3	24995011	24995012	chr3:24995012:C:T	rs115342535	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr3	25461004	25461005	chr3:25461005:C:T	rs74820342	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr3	25507470	25507471	chr3:25507471:C:T	rs1997353	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr3	25556440	25556441	chr3:25556441:C:T	rs140817964	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr3	26062084	26062085	chr3:26062085:A:G	rs13063917	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr3	26592359	26592360	chr3:26592360:C:T	rs6764258	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr3	26592368	26592369	chr3:26592369:C:T	rs13097615	C	T	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr3	26630781	26630782	chr3:26630782:C:T	rs6807757	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr3	27881035	27881036	chr3:27881036:T:C	rs73049287	T	C	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr3	28077818	28077819	chr3:28077819:C:T	rs4680898	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr3	28077824	28077825	chr3:28077825:G:T	rs772985281	G	T	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	28218248	28218249	chr3:28218249:A:T	rs73823439	A	T	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr3	28249451	28249452	chr3:28249452:A:G	rs12498078	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr3	28484856	28484857	chr3:28484857:A:G	rs7652167	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr3	28664365	28664366	chr3:28664366:A:G	rs35353146	A	G	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr3	29186777	29186778	chr3:29186778:C:T	rs114993709	C	T	C	Sox3.mouse_HMG_2	13	1	-	4.984176045715861	-1.0674624584704506	GCTCAATGTCAGCGGTA
chr3	29229003	29229004	chr3:29229004:G:A	rs17705662	G	A	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr3	29401994	29401995	chr3:29401995:T:C	rs6549937	T	C	t	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr3	29669846	29669847	chr3:29669847:A:G	rs6785789	A	G	G	Sox3.mouse_HMG_2	16	1	-	2.7766359936241503	1.1736429439636993	AATCAAAGTTATTGCAT
chr3	30231934	30231935	chr3:30231935:C:G	rs74647317	C	G	c	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr3	30398314	30398315	chr3:30398315:T:A	rs147442063	T	A	T	Sox3.mouse_HMG_2	5	1	-	2.3018583896077947	-4.606216838185263	TCTCCATGTTAGTGGAT
chr3	30451858	30451859	chr3:30451859:C:T	rs11129405	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	30452001	30452002	chr3:30452002:G:C	rs11129406	G	C	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr3	30656899	30656900	chr3:30656900:T:C	rs2082225	T	C	C	Sox3.mouse_HMG_2	7	1	+	5.143620217364048	-0.35931006387876213	GAACAACTATAGTGATG
chr3	30666251	30666252	chr3:30666252:G:A	rs934328	G	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr3	30684152	30684153	chr3:30684153:T:C	rs876687	T	C	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr3	30864082	30864083	chr3:30864083:A:G	rs1389904	A	G	G	Sox3.mouse_HMG_2	14	1	-	2.8348747359881576	0.8217276421481579	GCTCAATTCTAGGGTTT
chr3	31075883	31075884	chr3:31075884:A:G	rs1485925	A	G	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr3	31229788	31229789	chr3:31229789:A:G	rs118080146	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr3	31237724	31237725	chr3:31237725:A:C	rs7646751	A	C	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr3	31275698	31275699	chr3:31275699:A:G	rs117409416	A	G	G	Sox3.mouse_HMG_2	1	1	+	3.82171208123924	1.8153241392197828	CATGAAGTGCATTGATT
chr3	31323193	31323194	chr3:31323194:G:A	rs9310966	G	A	A	Sox3.mouse_HMG_2	12	1	-	2.7427872049251216	8.793754342855939	CTTCAATTGGATCGATT
chr3	31407722	31407723	chr3:31407723:T:C	rs73824128	T	C	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	31421407	31421408	chr3:31421408:T:C	rs12485914	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr3	31499807	31499808	chr3:31499808:G:A	rs12485487	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr3	31684632	31684633	chr3:31684633:C:G	rs17027964	C	G	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr3	31817862	31817863	chr3:31817863:A:G	rs9881919	A	G	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr3	32023114	32023115	chr3:32023115:A:G	rs1597666	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	32095506	32095507	chr3:32095507:G:A	rs9680948	G	A	A	Sox3.mouse_HMG_2	15	1	-	1.635048569070827	5.414847986576622	AGTCATTGCCAGTGACG
chr3	32403753	32403754	chr3:32403754:A:G	rs3844589	A	G	G	Sox3.mouse_HMG_2	2	1	-	5.285965622970281	-1.0809316835554652	CATCATTTTCAGTGTTT
chr3	32477893	32477894	chr3:32477894:A:G	rs116526530	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.3438052741001014	-3.0454761602777864	ATTCAATGGTGGTGAAA
chr3	32488995	32488996	chr3:32488996:C:T	rs193103975	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr3	33146703	33146704	chr3:33146704:A:G	rs56401432	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr3	33363421	33363422	chr3:33363422:C:T	rs12486192	C	T	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr3	33368118	33368119	chr3:33368119:G:A	rs3915062	G	A	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr3	33854149	33854150	chr3:33854150:A:G	rs111745498	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr3	34014540	34014541	chr3:34014541:C:G	rs74737899	C	G	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr3	34019737	34019738	chr3:34019738:G:A	rs4075756	G	A	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr3	34189440	34189441	chr3:34189441:C:T	rs11712920	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr3	34283633	34283634	chr3:34283634:T:G	rs57357054	T	G	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr3	34283660	34283661	chr3:34283661:A:G	rs145800438	A	G	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr3	34593511	34593512	chr3:34593512:C:A	rs13082790	C	A	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr3	34676388	34676389	chr3:34676389:C:T	rs2358501	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr3	35264685	35264686	chr3:35264686:A:C	rs78519183	A	C	A	Sox3.mouse_HMG_2	16	1	+	5.84435975761536	4.816662824074105	TTTCAATTCTAGTAATA
chr3	35367392	35367393	chr3:35367393:G:A	rs1450312	G	A	A	Sox3.mouse_HMG_2	10	1	-	2.077592093159805	2.077592093159805	CCTCAATGCCCGTGTTG
chr3	35685255	35685256	chr3:35685256:A:G	rs3821447	A	G	A	Sox3.mouse_HMG_2	6	1	-	4.144177066476895	-2.245104367900993	CACCAATTGTATGGATA
chr3	35687388	35687389	chr3:35687389:A:G	rs2063648	A	G	G	Sox3.mouse_HMG_2	4	1	+	1.8844600753885417	-4.5048213589893455	ATACAATGGCTGTGATG
chr3	35954355	35954356	chr3:35954356:C:A	rs11926364	C	A	C	Sox3.mouse_HMG_2	13	1	-	3.803554343912105	-2.583705695015107	CATCATTGTTATTGGCC
chr3	35954373	35954374	chr3:35954374:A:G	rs3996	A	G	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr3	35955380	35955381	chr3:35955381:A:G	rs1488092	A	G	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	36784375	36784376	chr3:36784376:A:G	rs181186448	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr3	36795909	36795910	chr3:36795910:C:G	rs9849965	C	G	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr3	36895595	36895596	chr3:36895596:T:A	rs188110692	T	A	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr3	36919168	36919169	chr3:36919169:C:A	rs7622114	C	A	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr3	37109496	37109497	chr3:37109497:C:G	rs6806252	C	G	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr3	37767985	37767986	chr3:37767986:A:G	rs11712654	A	G	a	Sox3.mouse_HMG_2	6	1	-	3.2928462062420887	-3.096435228135802	TTTCAATTGCAATGACA
chr3	37935312	37935313	chr3:37935313:A:C	rs9823784	A	C	A	Sox3.mouse_HMG_2	14	1	+	3.251704847667718	-2.780823769920927	TATCATTTCTATTCATT
chr3	37994623	37994624	chr3:37994624:A:G	rs915475885	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	38004531	38004532	chr3:38004532:A:C	rs9843506	A	C	A	Sox3.mouse_HMG_2	4	1	+	2.7976880178232735	-4.110387209969784	GAGCAATTGCATTGCGG
chr3	38228337	38228338	chr3:38228338:A:G	rs111369288	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr3	38264655	38264656	chr3:38264656:A:C	rs9850046	A	C	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr3	38353052	38353053	chr3:38353053:G:A	rs2669607	G	A	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr3	38516824	38516825	chr3:38516825:C:T	rs7644530	C	T	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr3	38526279	38526280	chr3:38526280:C:A	rs6796845	C	A	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr3	38984907	38984908	chr3:38984908:C:T	rs34235284	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr3	39108082	39108083	chr3:39108083:C:T	rs28362641	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr3	39108104	39108105	chr3:39108105:A:G	rs142798608	A	G	A	Sox3.mouse_HMG_2	9	1	-	6.159270737979449	5.46661819510749	GGATAATGATAGTGATT
chr3	39155129	39155130	chr3:39155130:C:T	rs111946296	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	39216264	39216265	chr3:39216265:A:C	rs17792215	A	C	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr3	39292009	39292010	chr3:39292010:A:C	rs80127801	A	C	a	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr3	39343809	39343810	chr3:39343810:A:G	rs74694890	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr3	39917646	39917647	chr3:39917647:T:C	rs4257487	T	C	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr3	39927868	39927869	chr3:39927869:G:A	rs9837807	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr3	40146352	40146353	chr3:40146353:T:C	rs73827320	T	C	T	Sox3.mouse_HMG_2	2	1	+	2.149645127344823	-4.217252179180924	GATCAAAGCCAGTGTGA
chr3	40193772	40193773	chr3:40193773:T:C	rs2679814	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr3	40193781	40193782	chr3:40193782:C:T	rs2679815	C	T	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr3	40218246	40218247	chr3:40218247:G:A	rs11129869	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr3	41026204	41026205	chr3:41026205:C:T	rs6809212	C	T	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr3	41072441	41072442	chr3:41072442:T:C	rs395349	T	C	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr3	41098165	41098166	chr3:41098166:C:A	rs60300746	C	A	C	Sox3.mouse_HMG_2	7	1	-	3.4947002412872172	2.368809027441971	GTTCAATGACCTTGGTA
chr3	41328962	41328963	chr3:41328963:C:T	rs9814012	C	T	c	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	41502627	41502628	chr3:41502628:T:C	rs1795322	T	C	T	Sox3.mouse_HMG_2	11	1	+	7.97692547302074	1.2925512735604043	GAACAATACTATTGATA
chr3	41523760	41523761	chr3:41523761:T:C	rs2700454	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr3	41572486	41572487	chr3:41572487:A:T	rs1267087	A	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr3	42062332	42062333	chr3:42062333:G:A	rs76816445	G	A	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr3	42103488	42103489	chr3:42103489:C:T	rs6808207	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr3	42275390	42275391	chr3:42275391:G:C	rs79199376	G	C	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr3	42348336	42348337	chr3:42348337:A:G	rs2240863	A	G	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr3	42518949	42518950	chr3:42518950:G:A	rs450812	G	A	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr3	42713419	42713420	chr3:42713420:A:G	rs3895740	A	G	G	Sox3.mouse_HMG_2	10	1	+	3.484515931707031	-3.4242388476081884	TTACATTGGTAGTGATG
chr3	42725866	42725867	chr3:42725867:A:G	rs339731	A	G	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr3	42736370	42736371	chr3:42736371:A:G	rs11922251	A	G	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr3	42762463	42762464	chr3:42762464:A:G	rs339669	A	G	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr3	43085082	43085083	chr3:43085083:G:T	rs12485530	G	T	t	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr3	43364905	43364906	chr3:43364906:G:A	rs150764868	G	A	g	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr3	43753913	43753914	chr3:43753914:G:A	rs145982407	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr3	43866750	43866751	chr3:43866751:T:C	rs4082418	T	C	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr3	44003874	44003875	chr3:44003875:A:G	rs6806281	A	G	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr3	44227748	44227749	chr3:44227749:C:G	rs73086526	C	G	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	44227785	44227786	chr3:44227786:G:A	rs773122194	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr3	44236793	44236794	chr3:44236794:A:C	rs9820036	A	C	C	Sox3.mouse_HMG_2	11	1	-	4.055338273648866	2.674816096235042	TACTAATTCCATTGATA
chr3	44236806	44236807	chr3:44236807:T:C	rs4682959	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr3	44535743	44535744	chr3:44535744:T:C	rs2141574	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.8234327538759914	-3.565848680501898	GGGCAATGTTATTAGTG
chr3	44536795	44536796	chr3:44536796:G:T	rs2049777	G	T	T	Sox3.mouse_HMG_2	16	1	+	2.0833959886094604	2.4471176782434063	AGCCAATGGTATGGATG
chr3	45001144	45001145	chr3:45001145:G:A	rs9968216	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	45025988	45025989	chr3:45025989:A:C	rs72864862	A	C	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr3	45042248	45042249	chr3:45042249:T:C	rs11924100	T	C	T	Sox3.mouse_HMG_2	6	1	+	2.522764090354352	-3.866517344023538	GAACAATGGTACCGATG
chr3	45097671	45097672	chr3:45097672:C:T	rs79330620	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	45167360	45167361	chr3:45167361:G:A	rs531673504	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr3	45319701	45319702	chr3:45319702:A:G	rs9829766	A	G	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr3	45437631	45437632	chr3:45437632:A:C	rs2138210	A	C	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	45643893	45643894	chr3:45643894:G:A	rs6765732	G	A	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr3	45875525	45875526	chr3:45875526:C:T	rs74426244	C	T	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr3	46082059	46082060	chr3:46082060:G:C	rs6802380	G	C	G	Sox3.mouse_HMG_2	9	1	-	1.7678933713938254	-3.5234353456185334	CATCAATGCCTTTAAGT
chr3	46109444	46109445	chr3:46109445:G:A	rs1500004	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr3	46313127	46313128	chr3:46313128:A:G	rs140058837	A	G	A	Sox3.mouse_HMG_2	5	1	-	1.9008216793127537	1.9008216793127537	GCTCATTGGCATTGTAG
chr3	46313143	46313144	chr3:46313144:C:T	rs149884352	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr3	46372251	46372252	chr3:46372252:C:T	rs2856764	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	46451937	46451938	chr3:46451938:C:T	rs6766188	C	T	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr3	46544752	46544753	chr3:46544753:G:A	rs7626061	G	A	A	Sox3.mouse_HMG_2	3	1	-	6.7785725503598835	1.9217166751376584	CATCAATTTAAGTGACG
chr3	46549613	46549614	chr3:46549614:T:A	rs6770574	T	A	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	46614860	46614861	chr3:46614861:A:G	rs873382	A	G	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr3	48869035	48869036	chr3:48869036:T:G	rs4974079	T	G	G	Sox3.mouse_HMG_2	4	1	-	2.3598891144771152	-4.5481861133159445	GCTCATTTTTATTGCTA
chr3	49076279	49076280	chr3:49076280:C:A	rs34580506	C	A	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr3	49076295	49076296	chr3:49076296:C:T	rs73082362	C	T	c	Sox3.mouse_HMG_2	1	1	-	3.426047855646044	5.432435797665501	CGGCGATGTCAGTGATG
chr3	49643539	49643540	chr3:49643540:G:A	rs10452032	G	A	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr3	49647639	49647640	chr3:49647640:G:A	rs2329020	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr3	50165355	50165356	chr3:50165356:A:G	rs59112948	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr3	50165398	50165399	chr3:50165399:G:A	rs141182962	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr3	50660109	50660110	chr3:50660110:A:G	rs78104031	A	G	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr3	50676031	50676032	chr3:50676032:A:C	rs193132573	A	C	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr3	50745933	50745934	chr3:50745934:T:C	rs60552386	T	C	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr3	50792750	50792751	chr3:50792751:C:T	rs79264818	C	T	.	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr3	50830688	50830689	chr3:50830689:G:A	rs17051468	G	A	.	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr3	51450452	51450453	chr3:51450453:G:A	rs6445727	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr3	51735189	51735190	chr3:51735190:G:T	rs4687775	G	T	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr3	51896833	51896834	chr3:51896834:T:C	rs57859638	T	C	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr3	51923400	51923401	chr3:51923401:C:A	rs979100427	C	A	c	Sox3.mouse_HMG_2	8	1	-	5.337791935050555	6.151429868054768	GATGGATTGTATTGATT
chr3	51941560	51941561	chr3:51941561:C:T	rs929533	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr3	52144539	52144540	chr3:52144540:G:A	rs148576317	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr3	52170956	52170957	chr3:52170957:C:G	rs567649565	C	G	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr3	52202745	52202746	chr3:52202746:G:A	rs352169	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr3	53031147	53031148	chr3:53031148:T:C	rs565547994	T	C	T	Sox3.mouse_HMG_2	2	1	+	5.015375515906314	-1.3515217906194312	CATTAAGTGCATTGATT
chr3	53624696	53624697	chr3:53624697:C:T	rs147846726	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr3	53628942	53628943	chr3:53628943:G:A	rs7630968	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr3	53703179	53703180	chr3:53703180:A:G	rs116031253	A	G	A	Sox3.mouse_HMG_2	4	1	+	2.8217346031150363	-3.567546831262854	GAACAGTGTTATTGGAC
chr3	53888229	53888230	chr3:53888230:A:G	rs2304576	A	G	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	54133298	54133299	chr3:54133299:C:T	rs721764	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr3	54226071	54226072	chr3:54226072:C:T	rs193269972	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr3	54269861	54269862	chr3:54269862:G:T	rs6773234	G	T	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr3	54755946	54755947	chr3:54755947:T:C	rs72874207	T	C	T	Sox3.mouse_HMG_2	5	1	-	7.466560311272374	1.077278876894485	CTTCAATTTCAGTAATT
chr3	54899300	54899301	chr3:54899301:A:G	rs77378286	A	G	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr3	54902643	54902644	chr3:54902644:G:A	rs17319204	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr3	54902661	54902662	chr3:54902662:T:G	rs17054529	T	G	T	Sox3.mouse_HMG_2	11	1	+	5.489128177745946	4.108606000332122	CATCCATTGCATTGTTG
chr3	55194184	55194185	chr3:55194185:T:G	rs11130464	T	G	T	Sox3.mouse_HMG_2	4	1	-	8.336971240203603	1.428896012410545	GTTCAACGTCATTGATC
chr3	55680483	55680484	chr3:55680484:T:C	rs75683922	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr3	55746779	55746780	chr3:55746780:A:G	rs2201516	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr3	55746786	55746787	chr3:55746787:T:C	rs1390194	T	C	T	Sox3.mouse_HMG_2	0	1	+	3.8561013211249566	4.341236335379065	TATCAAAGCTGTTGATT
chr3	55746787	55746788	chr3:55746788:A:T	rs1390195	A	T	A	Sox3.mouse_HMG_2	1	1	+	3.8561013211249566	1.1608777620716602	TATCAAAGCTGTTGATT
chr3	56046313	56046314	chr3:56046314:A:G	rs1401406	A	G	a	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr3	56076994	56076995	chr3:56076995:T:C	rs10510779	T	C	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr3	56220641	56220642	chr3:56220642:A:G	rs73080543	A	G	A	Sox3.mouse_HMG_2	12	1	-	4.431195588364732	-1.6197715495660852	GGACAATTGCAGTGGAG
chr3	56278111	56278112	chr3:56278112:C:G	rs2167618	C	G	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr3	56302698	56302699	chr3:56302699:C:T	rs115233160	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr3	56309515	56309516	chr3:56309516:G:A	rs2873303	G	A	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	56443467	56443468	chr3:56443468:T:C	rs1878267	T	C	T	Sox3.mouse_HMG_2	16	1	-	3.1907462752851923	3.4023207017704427	CTTCCATGACATTGGTA
chr3	56680394	56680395	chr3:56680395:A:C	rs7645941	A	C	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr3	56788288	56788289	chr3:56788289:A:G	rs11712455	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.62290806292241	-4.061466136537925	AGGCAATTTCATTGGGG
chr3	56797238	56797239	chr3:56797239:T:C	rs35983891	T	C	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr3	57021179	57021180	chr3:57021180:T:C	rs142547657	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr3	57036127	57036128	chr3:57036128:C:A	rs1010338	C	A	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr3	57434274	57434275	chr3:57434275:G:A	rs13070406	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	57438608	57438609	chr3:57438609:A:G	rs9878353	A	G	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr3	57446217	57446218	chr3:57446218:T:C	rs62622492	T	C	t	Sox3.mouse_HMG_2	11	1	+	4.637503862776677	-2.0468703366836567	ACTCAATTCGATTGAAT
chr3	57644896	57644897	chr3:57644897:C:T	rs12490892	C	T	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr3	58116074	58116075	chr3:58116075:C:T	rs13095627	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr3	58419703	58419704	chr3:58419704:A:G	rs11714807	A	G	G	Sox3.mouse_HMG_2	1	1	+	5.625029657079893	3.618641715060434	GAACAATGGTACTGAGA
chr3	58423335	58423336	chr3:58423336:T:C	rs12631656	T	C	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr3	58431688	58431689	chr3:58431689:C:T	rs62259772	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr3	58433992	58433993	chr3:58433993:G:A	rs578033247	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	58434038	58434039	chr3:58434039:G:C	rs116112173	G	C	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr3	58577938	58577939	chr3:58577939:C:T	rs75155038	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr3	58723620	58723621	chr3:58723621:G:A	rs60391919	G	A	A	Sox3.mouse_HMG_2	14	1	+	2.62031111957421	5.9383773893458125	GATGAATGTGAGTGGTG
chr3	59043462	59043463	chr3:59043463:A:G	rs7649388	A	G	A	Sox3.mouse_HMG_2	14	1	+	1.076749055532207	-2.2413172142393947	GATCAAAGCCACTGAGG
chr3	59457056	59457057	chr3:59457057:C:T	rs78353045	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	59501794	59501795	chr3:59501795:C:A	rs9869179	C	A	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr3	59790554	59790555	chr3:59790555:G:A	rs62238261	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr3	60304441	60304442	chr3:60304442:C:G	rs741897	C	G	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr3	60920496	60920497	chr3:60920497:G:A	rs11713112	G	A	G	Sox3.mouse_HMG_2	14	1	+	3.4605184779746794	6.778584747746281	GATCAGTGGTAGTGGCA
chr3	60948076	60948077	chr3:60948077:G:A	rs1562524	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr3	61519110	61519111	chr3:61519111:G:A	rs35581372	G	A	G	Sox3.mouse_HMG_2	3	1	-	3.8274424426811224	-1.0294134325410995	ATACAATGCTATGGATA
chr3	61581088	61581089	chr3:61581089:C:T	rs115811120	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr3	61597156	61597157	chr3:61597157:C:T	rs7612843	C	T	C	Sox3.mouse_HMG_2	0	1	-	5.015126069532735	3.3186337758300715	GATTAATGTCATTAAGG
chr3	61662961	61662962	chr3:61662962:T:C	rs2365936	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr3	61674894	61674895	chr3:61674895:T:G	rs7619562	T	G	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr3	61718840	61718841	chr3:61718841:G:A	rs685896	G	A	A	Sox3.mouse_HMG_2	0	1	+	11.987676883452439	10.291184589749776	GTTCAATGCTATTGACT
chr3	61734798	61734799	chr3:61734799:C:G	rs77968518	C	G	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr3	61962283	61962284	chr3:61962284:C:T	rs56333420	C	T	C	Sox3.mouse_HMG_2	14	1	+	4.905689645713332	6.918836739553333	TGTTAATTTTATTGCTT
chr3	62035626	62035627	chr3:62035627:A:T	rs995380	A	T	A	Sox3.mouse_HMG_2	2	1	-	3.1304974608172285	-0.1511593149663077	TATGAATGTCAGTGGCA
chr3	62044974	62044975	chr3:62044975:G:A	rs4688121	G	A	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr3	62445500	62445501	chr3:62445501:A:G	chr3:62445501:A:G	A	G	A	Sox3.mouse_HMG_2	5	1	-	4.187444481053745	4.187444481053745	TTTCATTTTCATTGGTT
chr3	62538974	62538975	chr3:62538975:A:G	rs17066545	A	G	A	Sox3.mouse_HMG_2	2	1	+	4.210279730990602	2.3380618400942454	GAACAATTTCATTTTTT
chr3	62727375	62727376	chr3:62727376:G:T	rs925019	G	T	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr3	63051882	63051883	chr3:63051883:G:T	rs141074547	G	T	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr3	63051928	63051929	chr3:63051929:G:T	rs873306	G	T	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr3	63451226	63451227	chr3:63451227:C:T	rs17068589	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr3	63532823	63532824	chr3:63532824:A:T	chr3:63532824:A:T	A	T	A	Sox3.mouse_HMG_2	11	1	-	3.4737427386827884	-2.478263567064322	TTACAATTTCATTGGGC
chr3	63753942	63753943	chr3:63753943:T:C	rs34520803	T	C	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr3	63968972	63968973	chr3:63968973:A:G	rs3774721	A	G	A	Sox3.mouse_HMG_2	9	1	-	5.127430992067255	4.434778449195297	AATCAATTATAGAGAAT
chr3	64017428	64017429	chr3:64017429:G:A	rs76478992	G	A	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr3	64047084	64047085	chr3:64047085:C:A	rs6769680	C	A	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr3	64067111	64067112	chr3:64067112:G:T	rs12493866	G	T	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr3	64158468	64158469	chr3:64158469:A:G	rs11711394	A	G	A	Sox3.mouse_HMG_2	12	1	+	3.7094110732842767	3.3737895385433774	CATCCATTCTATAGATG
chr3	64448486	64448487	chr3:64448487:G:A	rs9844520	G	A	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr3	64563054	64563055	chr3:64563055:C:T	rs4688481	C	T	T	Sox3.mouse_HMG_2	1	1	+	9.010512638787489	9.030730616078134	GCTCAATTGTATTAATT
chr3	64961358	64961359	chr3:64961359:T:C	rs80271139	T	C	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr3	65110883	65110884	chr3:65110884:T:C	rs17402887	T	C	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr3	65114130	65114131	chr3:65114131:G:A	rs2170573	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	65130525	65130526	chr3:65130526:G:A	rs1482609	G	A	g	Sox3.mouse_HMG_2	11	1	+	5.261825342412804	0.6903412140795171	CATCAATGGCTGTGACA
chr3	65230695	65230696	chr3:65230696:C:G	rs143192638	C	G	C	Sox3.mouse_HMG_2	14	1	+	2.460586561506598	5.175048909323642	CAGCAATGGCAGTGCAA
chr3	65292265	65292266	chr3:65292266:C:T	rs11715903	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr3	65535648	65535649	chr3:65535649:A:G	rs17073070	A	G	A	Sox3.mouse_HMG_2	5	1	+	8.155116970007638	1.7658355356297486	TATCAATGGCATTCAAA
chr3	65816311	65816312	chr3:65816312:T:G	rs1473530	T	G	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr3	66002053	66002054	chr3:66002054:C:T	rs6779615	C	T	C	Sox3.mouse_HMG_2	1	1	+	8.82753587765105	8.847753854941695	CCTCAATTTCATAGATT
chr3	66129110	66129111	chr3:66129111:G:A	rs28711993	G	A	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	66353640	66353641	chr3:66353641:A:G	rs9868446	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr3	66516783	66516784	chr3:66516784:T:C	rs7646790	T	C	T	Sox3.mouse_HMG_2	5	1	-	6.718112749053104	0.32883131467521337	TAACAATGCTATTGGCA
chr3	66890298	66890299	chr3:66890299:T:C	rs17045469	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	66910775	66910776	chr3:66910776:C:T	rs1563442	C	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr3	66999609	66999610	chr3:66999610:A:G	rs11920665	A	G	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr3	67133867	67133868	chr3:67133868:T:C	rs73091784	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.7065028145287573	-2.6827786198491297	GTTTAATACTATTGATA
chr3	67133872	67133873	chr3:67133873:T:C	rs73093447	T	C	c	Sox3.mouse_HMG_2	11	1	+	3.7065028145287573	-2.977871384931577	GTTTAATACTATTGATA
chr3	67212813	67212814	chr3:67212814:G:A	rs4128751	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr3	67480735	67480736	chr3:67480736:A:G	rs76504776	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr3	67557843	67557844	chr3:67557844:C:T	rs2634736	C	T	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr3	67901882	67901883	chr3:67901883:C:T	rs1868185	C	T	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr3	69120860	69120861	chr3:69120861:T:C	rs9844987	T	C	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr3	69431886	69431887	chr3:69431887:T:C	rs9831196	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr3	69535881	69535882	chr3:69535882:T:C	rs7644318	T	C	C	Sox3.mouse_HMG_2	10	1	-	2.541493129505361	-4.36726164980986	CAAGAATGGCATTGCTT
chr3	69683128	69683129	chr3:69683129:C:T	rs2114659	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr3	69719781	69719782	chr3:69719782:A:G	rs7622943	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr3	69719788	69719789	chr3:69719789:T:C	rs7625281	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr3	70044570	70044571	chr3:70044571:A:G	rs13094951	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr3	70108379	70108380	chr3:70108380:C:A	rs60995599	C	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr3	70816096	70816097	chr3:70816097:T:G	rs1369553	T	G	G	Sox3.mouse_HMG_2	3	1	+	2.5263098738645446	1.3326464391974693	GATTAATGCTAGGGAGA
chr3	70935907	70935908	chr3:70935908:C:A	rs11928769	C	A	C	Sox3.mouse_HMG_2	0	1	-	10.236229136254446	9.44646060447615	GAACAATGGCAGTGAGA
chr3	71213022	71213023	chr3:71213023:C:T	rs73108264	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr3	71227983	71227984	chr3:71227984:T:C	rs2686275	T	C	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr3	71309733	71309734	chr3:71309734:C:A	rs557117932	C	A	C	Sox3.mouse_HMG_2	0	1	+	3.3929784391431954	2.0011196629647197	CTTCAATGATTTTGTTG
chr3	71429762	71429763	chr3:71429763:C:T	rs115916492	C	T	.	Sox3.mouse_HMG_2	10	1	-	5.217771917985893	12.126526697301115	TTTCAATGACGGTGATT
chr3	71723466	71723467	chr3:71723467:T:C	rs9680899	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	71790250	71790251	chr3:71790251:G:A	rs1343839	G	A	G	Sox3.mouse_HMG_2	15	1	-	2.3996683521057034	6.179467769611499	AGGCAATGACAGTGACA
chr3	72075898	72075899	chr3:72075899:T:C	rs67908047	T	C	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr3	72204129	72204130	chr3:72204130:G:A	rs4428141	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr3	72237572	72237573	chr3:72237573:G:A	rs34741169	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr3	72491047	72491048	chr3:72491048:T:C	rs73838299	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr3	72791312	72791313	chr3:72791313:G:A	rs765306694	G	A	G	Sox3.mouse_HMG_2	11	1	+	3.141292324592596	-1.4301918037406882	GATCAAATGAAGTGATG
chr3	73090661	73090662	chr3:73090662:G:A	rs9824173	G	A	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	73090663	73090664	chr3:73090664:T:C	rs35913231	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	73147016	73147017	chr3:73147017:C:A	rs2007172	C	A	C	Sox3.mouse_HMG_2	5	1	+	1.2410670525472558	8.149142280340314	CATCCCTGCTATTGAGG
chr3	73325290	73325291	chr3:73325291:T:C	rs4677261	T	C	C	Sox3.mouse_HMG_2	5	1	-	7.269670822078892	0.8803893877010036	TTTTAATGACAGTGATT
chr3	73378631	73378632	chr3:73378632:T:C	rs76805403	T	C	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr3	73509502	73509503	chr3:73509503:C:T	rs4676929	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr3	73510472	73510473	chr3:73510473:T:C	rs4557100	T	C	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr3	73557486	73557487	chr3:73557487:C:T	rs35594519	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr3	73584175	73584176	chr3:73584176:C:T	rs6771982	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr3	73656392	73656393	chr3:73656393:C:T	rs13082404	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr3	73656396	73656397	chr3:73656397:C:T	rs137864514	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr3	73656402	73656403	chr3:73656403:C:T	rs192963395	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr3	73665669	73665670	chr3:73665670:T:C	rs1912770	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	73665691	73665692	chr3:73665692:T:A	rs1039956	T	A	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr3	73773459	73773460	chr3:73773460:G:A	rs9814002	G	A	G	Sox3.mouse_HMG_2	10	1	-	2.8375296445335594	2.8375296445335594	GGTCAAGGTCCTTGATG
chr3	73953001	73953002	chr3:73953002:G:A	rs9857728	G	A	A	Sox3.mouse_HMG_2	3	1	-	8.039172174204579	3.1823162989823555	ATACAATTTTATTGAAA
chr3	75013600	75013601	chr3:75013601:T:C	rs9842069	T	C	T	Sox3.mouse_HMG_2	15	1	+	3.187495359036661	-0.5923040584691344	AGCTAATGTTATTGATC
chr3	75013619	75013620	chr3:75013620:C:T	rs146996738	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr3	75672365	75672366	chr3:75672366:A:G	rs73126903	A	G	a	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr3	75915704	75915705	chr3:75915705:A:G	rs9869831	A	G	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr3	76047488	76047489	chr3:76047489:G:C	rs73841090	G	C	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr3	76138767	76138768	chr3:76138768:T:G	rs7648349	T	G	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr3	76384121	76384122	chr3:76384122:T:G	rs74624840	T	G	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr3	77119039	77119040	chr3:77119040:G:C	rs7649552	G	C	C	Sox3.mouse_HMG_2	0	1	+	8.735315261139839	8.430681743615652	GATGAATGGTAGTGAGT
chr3	77416106	77416107	chr3:77416107:A:G	rs72899157	A	G	A	Sox3.mouse_HMG_2	10	1	+	6.521927381929095	-0.38682739738612565	GAAGAATTTTATTGAGT
chr3	77693257	77693258	chr3:77693258:G:A	rs776105	G	A	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr3	77726421	77726422	chr3:77726422:G:A	rs60342231	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	77781084	77781085	chr3:77781085:A:T	rs72891852	A	T	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	77836720	77836721	chr3:77836721:T:C	rs62254509	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	77945661	77945662	chr3:77945662:G:A	rs11127609	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	78870699	78870700	chr3:78870700:C:T	rs538020334	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr3	79098429	79098430	chr3:79098430:T:C	rs74719498	T	C	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr3	79141534	79141535	chr3:79141535:G:C	rs7619949	G	C	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr3	79548965	79548966	chr3:79548966:G:T	rs76828671	G	T	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr3	79761855	79761856	chr3:79761856:A:G	rs10865579	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.7591449397896093	-2.6301364945882804	GAGCAATTGTTGTGATA
chr3	80239524	80239525	chr3:80239525:C:T	rs2202862	C	T	C	Sox3.mouse_HMG_2	7	1	-	3.2196751561235915	-3.4091463389644643	AATCAAGGGCATGGATT
chr3	80367000	80367001	chr3:80367001:C:T	rs188766889	C	T	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr3	80543539	80543540	chr3:80543540:C:T	rs6548712	C	T	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr3	80734082	80734083	chr3:80734083:T:C	rs36040644	T	C	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr3	81034167	81034168	chr3:81034168:G:C	rs2639266	G	C	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr3	81106033	81106034	chr3:81106034:G:T	rs893517	G	T	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr3	81162269	81162270	chr3:81162270:A:G	rs12490101	A	G	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr3	81162276	81162277	chr3:81162277:T:C	rs12487117	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr3	81218382	81218383	chr3:81218383:T:C	rs17018692	T	C	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr3	81747239	81747240	chr3:81747240:T:A	rs66665538	T	A	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr3	82939418	82939419	chr3:82939419:T:C	rs6782805	T	C	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr3	85636236	85636237	chr3:85636237:C:T	rs75699990	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr3	85636257	85636258	chr3:85636258:C:T	rs11714008	C	T	T	Sox3.mouse_HMG_2	7	1	-	4.531373390138722	-2.097448104949335	CATCAGTGTCATTGTCT
chr3	85670606	85670607	chr3:85670607:G:A	rs4464471	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	86056182	86056183	chr3:86056183:G:T	rs73136136	G	T	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr3	86056189	86056190	chr3:86056190:G:A	rs9866277	G	A	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr3	86629328	86629329	chr3:86629329:A:G	rs9815232	A	G	A	Sox3.mouse_HMG_2	16	1	+	7.829774435196674	8.041348861681925	CTGCAATTATATTGATA
chr3	86793501	86793502	chr3:86793502:C:T	rs59662471	C	T	T	Sox3.mouse_HMG_2	1	1	-	2.128498120230785	4.134886062250242	GGTGAATGGTATAGAAG
chr3	86801957	86801958	chr3:86801958:A:G	rs28553515	A	G	a	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr3	86814628	86814629	chr3:86814629:C:T	rs534896138	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr3	86845667	86845668	chr3:86845668:C:G	rs9713432	C	G	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr3	86868295	86868296	chr3:86868296:C:T	rs9842925	C	T	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	86936902	86936903	chr3:86936903:C:A	rs4859084	C	A	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr3	87133108	87133109	chr3:87133109:A:T	rs62257768	A	T	A	Sox3.mouse_HMG_2	5	1	+	5.7989308117316085	-1.1091444160614479	GAAGAATGTCATTGGTA
chr3	87397519	87397520	chr3:87397520:A:T	rs75415760	A	T	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr3	87541717	87541718	chr3:87541718:T:A	rs9855058	T	A	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr3	87914635	87914636	chr3:87914636:C:T	rs13320429	C	T	C	Sox3.mouse_HMG_2	13	1	-	4.156606022790538	-1.895032481395773	GGTCAATGGAATTGTGT
chr3	88021683	88021684	chr3:88021684:C:T	rs9851806	C	T	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr3	88059971	88059972	chr3:88059972:A:C	chr3:88059972:A:C	A	C	A	Sox3.mouse_HMG_2	12	1	-	2.804275429090785	-3.5823132435809315	GAACAGTGGCAGTGACA
chr3	88257635	88257636	chr3:88257636:T:G	rs6551306	T	G	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr3	88822122	88822123	chr3:88822123:C:T	rs981433	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr3	88990810	88990811	chr3:88990811:G:A	rs6803153	G	A	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr3	89002321	89002322	chr3:89002322:G:T	rs875005	G	T	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr3	89002324	89002325	chr3:89002325:C:T	rs903894	C	T	c	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr3	89255457	89255458	chr3:89255458:C:T	rs6794198	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr3	89699953	89699954	chr3:89699954:G:A	rs75460209	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr3	89700000	89700001	chr3:89700001:C:T	rs76185636	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr3	89841333	89841334	chr3:89841334:G:A	rs13083420	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr3	90012150	90012151	chr3:90012151:C:A	rs188474710	C	A	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr3	90062789	90062790	chr3:90062790:G:T	rs76408732	G	T	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	94291973	94291974	chr3:94291974:A:G	rs1584925	A	G	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr3	94314994	94314995	chr3:94314995:T:G	rs7625227	T	G	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr3	94481702	94481703	chr3:94481703:C:T	rs1002892489	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	95712058	95712059	chr3:95712059:A:C	rs6785972	A	C	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr3	95957591	95957592	chr3:95957592:A:G	rs1433243	A	G	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr3	96201724	96201725	chr3:96201725:C:T	rs11714452	C	T	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr3	96281133	96281134	chr3:96281134:A:C	rs7631393	A	C	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr3	96727063	96727064	chr3:96727064:C:T	rs16834829	C	T	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr3	97872683	97872684	chr3:97872684:A:G	rs186224760	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr3	97953231	97953232	chr3:97953232:C:T	rs9879532	C	T	C	Sox3.mouse_HMG_2	16	1	-	3.7496455000661006	3.5380710735808503	GATAAATTCTATTGTAG
chr3	98050932	98050933	chr3:98050933:G:A	rs9289510	G	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr3	98100182	98100183	chr3:98100183:G:A	rs61672522	G	A	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr3	98189870	98189871	chr3:98189871:T:G	rs137915854	T	G	T	Sox3.mouse_HMG_2	16	1	-	11.305071214253966	10.27737428071271	CAACAATGCCATTGAAA
chr3	98612614	98612615	chr3:98612615:G:T	rs35282212	G	T	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr3	98709901	98709902	chr3:98709902:G:A	rs16840077	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr3	98746881	98746882	chr3:98746882:T:G	rs828597	T	G	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr3	98962108	98962109	chr3:98962109:A:T	rs1383907	A	T	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr3	98973056	98973057	chr3:98973057:A:C	rs7432439	A	C	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr3	99250592	99250593	chr3:99250593:C:G	rs6807964	C	G	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr3	99410170	99410171	chr3:99410171:G:T	rs2623321	G	T	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr3	99410860	99410861	chr3:99410861:G:A	rs28634227	G	A	G	Sox3.mouse_HMG_2	9	1	-	0.712213383777203	1.4048659266491623	GATCATTGGCTTTGGTG
chr3	99410867	99410868	chr3:99410868:A:C	rs2929434	A	C	C	Sox3.mouse_HMG_2	2	1	-	0.712213383777203	-4.4416612829026905	GATCATTGGCTTTGGTG
chr3	99410877	99410878	chr3:99410878:T:G	rs73134486	T	G	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr3	100071487	100071488	chr3:100071488:A:C	rs7620228	A	C	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	100256613	100256614	chr3:100256614:T:A	rs77760672	T	A	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr3	100777364	100777365	chr3:100777365:C:A	rs75445005	C	A	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr3	101252075	101252076	chr3:101252076:A:C	rs348881	A	C	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr3	101501849	101501850	chr3:101501850:G:C	rs3856771	G	C	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr3	101640778	101640779	chr3:101640779:A:G	rs13082236	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.0241121731750082	-4.3651692612028805	CATCAATGGGACTGAAC
chr3	101677684	101677685	chr3:101677685:G:C	rs3806654	G	C	C	Sox3.mouse_HMG_2	7	1	+	6.669289712017211	0.04046821692915596	AGTCAATGTTATTGCGA
chr3	101903481	101903482	chr3:101903482:T:C	rs16844399	T	C	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr3	101936677	101936678	chr3:101936678:A:G	chr3:101936678:A:G	A	G	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr3	101936680	101936681	chr3:101936681:A:C	rs1053393819	A	C	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr3	101977855	101977856	chr3:101977856:A:G	rs1019710148	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr3	102034750	102034751	chr3:102034751:C:T	rs77771468	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	102094286	102094287	chr3:102094287:T:C	rs9832010	T	C	T	Sox3.mouse_HMG_2	10	1	+	9.624758642237282	9.624758642237282	TATCAATTTCTTTGATA
chr3	102124426	102124427	chr3:102124427:G:T	rs62272082	G	T	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr3	102378483	102378484	chr3:102378484:T:G	rs11927258	T	G	G	Sox3.mouse_HMG_2	10	1	-	6.359990858109604	-0.5487639212056172	CATGAATGTTAGTGGAT
chr3	102628322	102628323	chr3:102628323:G:C	rs62274189	G	C	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr3	102888078	102888079	chr3:102888079:T:A	rs1877271	T	A	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	102937272	102937273	chr3:102937273:G:A	rs16845838	G	A	A	Sox3.mouse_HMG_2	16	1	-	2.892076358687622	4.495069408348073	CATCTATATTAGTGATC
chr3	103889551	103889552	chr3:103889552:T:G	rs139249327	T	G	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr3	104102855	104102856	chr3:104102856:T:C	rs1107737	T	C	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr3	104553416	104553417	chr3:104553417:G:A	rs2063815	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr3	104701417	104701418	chr3:104701418:A:C	rs2139964	A	C	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr3	104814403	104814404	chr3:104814404:T:C	rs9862355	T	C	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr3	104861851	104861852	chr3:104861852:C:T	rs1946727	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr3	104890715	104890716	chr3:104890716:G:A	rs12491580	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr3	104948125	104948126	chr3:104948126:A:C	rs6806605	A	C	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr3	104948131	104948132	chr3:104948132:T:C	rs13066237	T	C	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr3	105327925	105327926	chr3:105327926:T:G	rs6804633	T	G	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr3	105529242	105529243	chr3:105529243:A:G	rs12630003	A	G	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr3	105703999	105704000	chr3:105704000:C:T	rs2305037	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	105826018	105826019	chr3:105826019:C:T	rs1992522	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr3	105978911	105978912	chr3:105978912:C:G	rs71631538	C	G	G	Sox3.mouse_HMG_2	15	1	-	2.7157373110659653	1.6730650382801953	TCTCTATTACATTGAGT
chr3	106276513	106276514	chr3:106276514:T:C	rs6798172	T	C	T	Sox3.mouse_HMG_2	9	1	+	4.769839173202586	4.077186630330626	AATCAACTTTAGTGACA
chr3	106616233	106616234	chr3:106616234:A:G	rs73857134	A	G	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr3	106616234	106616235	chr3:106616235:C:T	rs7626568	C	T	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr3	107242472	107242473	chr3:107242473:C:G	rs1283107	C	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	107958124	107958125	chr3:107958125:C:G	rs112996921	C	G	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr3	108219736	108219737	chr3:108219737:C:T	rs1289753	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.956511005068982	-3.09512749911733	CTTCAATGTGAGTGCTG
chr3	108223753	108223754	chr3:108223754:G:T	rs9838839	G	T	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr3	108392405	108392406	chr3:108392406:A:G	rs140595037	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr3	108565142	108565143	chr3:108565143:T:C	rs1454194	T	C	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr3	108588687	108588688	chr3:108588688:A:G	rs545627285	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr3	108892209	108892210	chr3:108892210:A:G	rs4522770	A	G	A	Sox3.mouse_HMG_2	2	1	-	4.456570817739056	-1.9103264887866884	GATCAATGGCAGAGTAT
chr3	109224192	109224193	chr3:109224193:G:A	rs1163372	G	A	.	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	109792663	109792664	chr3:109792664:T:C	rs75159448	T	C	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	110774698	110774699	chr3:110774699:C:T	rs12695218	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	111210243	111210244	chr3:111210244:A:G	rs57976070	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr3	111419471	111419472	chr3:111419472:G:T	rs77068168	G	T	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr3	111518932	111518933	chr3:111518933:A:C	rs17202754	A	C	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr3	111546578	111546579	chr3:111546579:T:C	rs62273542	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr3	111696107	111696108	chr3:111696108:G:A	rs73214109	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr3	111767704	111767705	chr3:111767705:T:C	rs9850851	T	C	T	Sox3.mouse_HMG_2	4	1	-	5.367305857302762	-1.0219755770751282	GAACAATGACAGTTATA
chr3	111768555	111768556	chr3:111768556:A:G	rs78339152	A	G	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr3	111851282	111851283	chr3:111851283:A:C	rs1282975	A	C	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr3	111916555	111916556	chr3:111916556:G:A	rs1282944	G	A	A	Sox3.mouse_HMG_2	0	1	+	3.2793411334293	1.5828488397266367	GAACAATCTTAATGATA
chr3	112333985	112333986	chr3:112333986:G:A	rs73856005	G	A	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr3	112487278	112487279	chr3:112487279:T:C	rs4682411	T	C	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr3	112519494	112519495	chr3:112519495:T:C	rs77253692	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr3	112633100	112633101	chr3:112633101:T:C	rs16859875	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr3	112871492	112871493	chr3:112871493:G:A	rs6805959	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr3	112871705	112871706	chr3:112871706:T:C	rs11714354	T	C	C	Sox3.mouse_HMG_2	2	1	+	7.454328773002241	1.0874314664764977	TGTCAATGGTGGTGATG
chr3	113947172	113947173	chr3:113947173:G:C	rs3204024	G	C	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr3	114719365	114719366	chr3:114719366:T:C	rs145799027	T	C	T	Sox3.mouse_HMG_2	11	1	+	3.9229342482536538	-2.7614399512066825	CCTCAATGATATGGACA
chr3	115239961	115239962	chr3:115239962:C:T	chr3:115239962:C:T	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr3	116716804	116716805	chr3:116716805:C:A	rs1133335	C	A	C	Sox3.mouse_HMG_2	16	1	+	3.0201389627246895	4.047835896265944	AATGAATGCCAGTGTTC
chr3	116716805	116716806	chr3:116716806:G:A	rs80058968	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr3	116741585	116741586	chr3:116741586:C:T	rs1368140	C	T	C	Sox3.mouse_HMG_2	16	1	-	2.745339701992515	2.533765275507265	GGTTAATTCAAGTGATG
chr3	117228740	117228741	chr3:117228741:G:A	rs11923744	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr3	117392787	117392788	chr3:117392788:T:C	rs1398629	T	C	T	Sox3.mouse_HMG_2	5	1	-	6.021384099551006	-0.3678973348268833	GAGCAATGGGAGTGATG
chr3	117493866	117493867	chr3:117493867:C:T	rs140838468	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr3	117582587	117582588	chr3:117582588:C:T	rs12491489	C	T	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr3	117625152	117625153	chr3:117625153:G:A	rs4146331	G	A	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr3	117651300	117651301	chr3:117651301:A:C	rs9875044	A	C	C	Sox3.mouse_HMG_2	3	1	-	5.019947068865203	3.826283634198128	AATTAATGCCATTGGAA
chr3	117688504	117688505	chr3:117688505:A:T	rs542588112	A	T	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr3	118973786	118973787	chr3:118973787:G:A	rs75371742	G	A	G	Sox3.mouse_HMG_2	8	1	+	3.5652533849298873	2.3464630001853903	AAGCAATGGCAGAGATG
chr3	119243895	119243896	chr3:119243896:T:G	rs58488777	T	G	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr3	119351669	119351670	chr3:119351670:T:C	rs56285588	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr3	119442602	119442603	chr3:119442603:C:T	rs112113709	C	T	C	Sox3.mouse_HMG_2	8	1	+	4.8415122806975015	6.095934246853171	GCTAAATGCCATTGAGA
chr3	119937290	119937291	chr3:119937291:T:C	rs77881395	T	C	T	Sox3.mouse_HMG_2	2	1	-	3.89607606260569	2.0238581717093367	GCACAATTCCATTCATG
chr3	120192755	120192756	chr3:120192756:C:T	rs6764549	C	T	C	Sox3.mouse_HMG_2	0	1	-	2.4975522632257894	0.8010599695231265	GATCAGTGCTGTTGAAG
chr3	120313899	120313900	chr3:120313900:C:T	rs191197813	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr3	120405885	120405886	chr3:120405886:A:G	rs4676778	A	G	G	Sox3.mouse_HMG_2	8	1	-	4.649721059527418	3.395299093371748	GGAAAATGTTATTGAAA
chr3	120678245	120678246	chr3:120678246:A:C	rs3755563	A	C	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr3	120781217	120781218	chr3:120781218:C:T	rs17243695	C	T	c	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr3	120983094	120983095	chr3:120983095:T:C	rs638589	T	C	C	Sox3.mouse_HMG_2	9	1	+	1.781809711276395	1.0891571684044359	CAGCAGTGGTAGTGGTA
chr3	121225368	121225369	chr3:121225369:G:A	rs16832180	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr3	121575006	121575007	chr3:121575007:T:C	rs66494182	T	C	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr3	121837371	121837372	chr3:121837372:C:T	rs9826473	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr3	122392073	122392074	chr3:122392074:C:T	rs6438726	C	T	C	Sox3.mouse_HMG_2	3	1	+	5.070884015813631	0.2140281405914078	CATCGATGTCACTGATA
chr3	122589303	122589304	chr3:122589304:G:A	rs11714010	G	A	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr3	122964165	122964166	chr3:122964166:A:C	rs57347971	A	C	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr3	123068665	123068666	chr3:123068666:A:T	rs7614797	A	T	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr3	123069574	123069575	chr3:123069575:A:G	rs9815443	A	G	G	Sox3.mouse_HMG_2	10	1	+	4.109694765455895	-2.799060013859325	GTTGAATTCTAGTGAGG
chr3	123149590	123149591	chr3:123149591:A:G	rs2717219	A	G	A	Sox3.mouse_HMG_2	6	1	-	6.7839229693196454	0.3946415349417575	GATAAATGTTATTGCTT
chr3	123203960	123203961	chr3:123203961:G:A	rs1515371	G	A	A	Sox3.mouse_HMG_2	0	1	+	3.79159684466714	2.095104550964476	GAACACTGCTAGTGAGG
chr3	123228884	123228885	chr3:123228885:C:T	rs9820059	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	123247336	123247337	chr3:123247337:T:C	rs13101217	T	C	C	Sox3.mouse_HMG_2	16	1	-	2.8145300579116066	3.026104484396857	AGTCAAAGATAGTGAAA
chr3	123346127	123346128	chr3:123346128:C:G	rs55848018	C	G	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr3	123471883	123471884	chr3:123471884:C:T	rs35000036	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr3	123620707	123620708	chr3:123620708:C:T	rs565233007	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr3	123949738	123949739	chr3:123949739:C:A	rs7619302	C	A	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr3	124169630	124169631	chr3:124169631:G:T	rs4677919	G	T	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr3	124542785	124542786	chr3:124542786:C:T	rs78778376	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr3	124723533	124723534	chr3:124723534:A:T	rs73197605	A	T	A	Sox3.mouse_HMG_2	14	1	+	7.893989878751629	3.8746083550029833	TAAGAATTTTATTGATA
chr3	124760861	124760862	chr3:124760862:G:T	rs74659236	G	T	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr3	124835937	124835938	chr3:124835938:G:A	rs1000935294	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr3	125247083	125247084	chr3:125247084:T:C	rs1850506	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr3	125463096	125463097	chr3:125463097:A:G	rs7613952	A	G	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr3	125587170	125587171	chr3:125587171:A:G	rs78628164	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr3	125925414	125925415	chr3:125925415:T:C	rs12489399	T	C	.	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr3	126130055	126130056	chr3:126130056:G:A	rs2365003	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr3	126130067	126130068	chr3:126130068:A:G	rs1868125	A	G	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr3	126320341	126320342	chr3:126320342:C:A	rs78151629	C	A	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr3	126320343	126320344	chr3:126320344:C:A	rs9854853	C	A	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	126697904	126697905	chr3:126697905:C:T	rs73199869	C	T	C	Sox3.mouse_HMG_2	13	1	-	4.770362123995484	-1.2812763801908285	GGTCAATGTCATAGGAA
chr3	126967259	126967260	chr3:126967260:A:G	rs115827108	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.082833370710539	-0.30644806366735217	CATCAATTGTGGTGAGG
chr3	127095003	127095004	chr3:127095004:C:T	rs62261964	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	127104595	127104596	chr3:127104596:T:A	rs17701673	T	A	T	Sox3.mouse_HMG_2	1	1	-	7.103829828165322	4.408606269112026	CATCAATGTTTGTGTTT
chr3	127129596	127129597	chr3:127129597:G:A	rs13316446	G	A	G	Sox3.mouse_HMG_2	8	1	+	7.622363418185586	6.403573033441089	ATTCAATGGCATTGGAA
chr3	127452950	127452951	chr3:127452951:C:G	rs6800029	C	G	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr3	127899854	127899855	chr3:127899855:G:C	rs4352337	G	C	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr3	127916253	127916254	chr3:127916254:T:C	rs1427540375	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr3	128053692	128053693	chr3:128053693:G:T	rs2335772	G	T	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr3	128076002	128076003	chr3:128076003:C:T	rs189492114	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	128314204	128314205	chr3:128314205:G:A	rs11706908	G	A	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr3	128618594	128618595	chr3:128618595:A:C	rs2712430	A	C	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	128722846	128722847	chr3:128722847:T:G	rs9842941	T	G	G	Sox3.mouse_HMG_2	4	1	-	3.345963592023395	-3.5621116357696616	AATCAATTCCTGTGAGA
chr3	128795079	128795080	chr3:128795080:A:G	rs9834608	A	G	G	Sox3.mouse_HMG_2	16	1	-	5.407022746761706	3.8040296971012557	GATCAATTGAATGGATT
chr3	128880266	128880267	chr3:128880267:C:G	rs73207996	C	G	C	Sox3.mouse_HMG_2	8	1	-	4.1112221854981374	3.670438152346679	CCTCAATGGCAGGGAGA
chr3	129421745	129421746	chr3:129421746:G:A	rs58932597	G	A	g	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr3	129563022	129563023	chr3:129563023:G:C	rs2713626	G	C	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr3	129566424	129566425	chr3:129566425:G:A	rs71333625	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr3	129651895	129651896	chr3:129651896:A:G	rs77017646	A	G	A	Sox3.mouse_HMG_2	11	1	+	6.664166344712569	11.235650473045856	GAGCAATGCCAATGATT
chr3	129795959	129795960	chr3:129795960:T:C	rs2811333	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr3	129831733	129831734	chr3:129831734:A:G	rs2811343	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr3	130360604	130360605	chr3:130360605:T:C	rs1453263	T	C	T	Sox3.mouse_HMG_2	14	1	-	5.5407207743674505	2.2226545045958495	AATCAATGTCAGTAACA
chr3	130850562	130850563	chr3:130850563:A:C	chr3:130850563:A:C	A	C	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr3	131048162	131048163	chr3:131048163:G:A	rs116331827	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	131705933	131705934	chr3:131705934:A:T	rs11705814	A	T	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr3	131880442	131880443	chr3:131880443:T:C	rs6769415	T	C	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr3	132071740	132071741	chr3:132071741:C:T	rs11720820	C	T	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr3	132136521	132136522	chr3:132136522:G:A	rs61793334	G	A	C	Sox3.mouse_HMG_2	1	1	+	1.4713627813639505	3.4777507233834095	CGTCACTGACAGTGGTC
chr3	132569652	132569653	chr3:132569653:C:A	rs76651220	C	A	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr3	132655208	132655209	chr3:132655209:G:A	rs13096279	G	A	A	Sox3.mouse_HMG_2	13	1	+	1.5959138317475239	-4.455724672438787	GGTCTATGCCACTGATA
chr3	132658767	132658768	chr3:132658768:T:C	rs59426843	T	C	C	Sox3.mouse_HMG_2	9	1	+	8.816442795441306	8.123790252569346	TATAAATGCTAGTGATA
chr3	132964621	132964622	chr3:132964622:T:C	rs6770087	T	C	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr3	132984242	132984243	chr3:132984243:G:C	rs9867673	G	C	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr3	133015932	133015933	chr3:133015933:G:A	rs1464397	G	A	A	Sox3.mouse_HMG_2	9	1	-	4.594470847112936	5.287123389984894	AATCAAGTACATTGAAG
chr3	133160274	133160275	chr3:133160275:A:G	rs112358350	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	133371261	133371262	chr3:133371262:C:T	rs1795101	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr3	133480635	133480636	chr3:133480636:T:C	rs55635040	T	C	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	133536535	133536536	chr3:133536536:G:A	rs73861138	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr3	133536611	133536612	chr3:133536612:C:T	rs191780654	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr3	133718933	133718934	chr3:133718934:A:G	rs4287912	A	G	g	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr3	133852117	133852118	chr3:133852118:C:T	rs115536619	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr3	133852118	133852119	chr3:133852119:A:G	rs116806676	A	G	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr3	133894669	133894670	chr3:133894670:G:A	rs2692679	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	133924157	133924158	chr3:133924158:T:C	rs9289459	T	C	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	133976659	133976660	chr3:133976660:G:A	rs4854781	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr3	134253006	134253007	chr3:134253007:A:C	rs145997461	A	C	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr3	134361818	134361819	chr3:134361819:A:G	rs1077718	A	G	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr3	134382598	134382599	chr3:134382599:G:A	rs35304308	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr3	134870144	134870145	chr3:134870145:G:T	rs139564606	G	T	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr3	134936570	134936571	chr3:134936571:G:C	rs9832922	G	C	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr3	134980026	134980027	chr3:134980027:T:C	rs6776069	T	C	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr3	135090534	135090535	chr3:135090535:C:T	rs2030737	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr3	135145686	135145687	chr3:135145687:G:A	rs3772647	G	A	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr3	135216810	135216811	chr3:135216811:A:G	rs34744364	A	G	g	Sox3.mouse_HMG_2	1	1	+	3.4449109419307633	1.4385229999113058	AATCATTTCCATTGTTA
chr3	135216830	135216831	chr3:135216831:T:C	rs28707535	T	C	c	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr3	135216845	135216846	chr3:135216846:G:C	rs34243073	G	C	g	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr3	135263266	135263267	chr3:135263267:G:A	rs34338595	G	A	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr3	135624811	135624812	chr3:135624812:G:A	rs1374769	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr3	136336616	136336617	chr3:136336617:T:C	rs8045	T	C	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr3	136378733	136378734	chr3:136378734:T:C	rs655836	T	C	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr3	136772960	136772961	chr3:136772961:A:G	rs114718496	A	G	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr3	136933291	136933292	chr3:136933292:A:G	rs73231966	A	G	A	Sox3.mouse_HMG_2	5	1	+	11.519635324761934	5.130353890384042	TAACAATGGTATTGAGA
chr3	137032511	137032512	chr3:137032512:G:A	rs1009879791	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr3	137033708	137033709	chr3:137033709:T:G	rs754694	T	G	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr3	137066954	137066955	chr3:137066955:G:A	rs1023765	G	A	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr3	137867116	137867117	chr3:137867117:A:G	rs72987039	A	G	A	Sox3.mouse_HMG_2	14	1	+	0.9974479862778893	-2.320618283493712	GGGCAATCCCAGTGATC
chr3	137867118	137867119	chr3:137867119:C:T	rs981575620	C	T	C	Sox3.mouse_HMG_2	16	1	+	0.9974479862778893	2.6004410359383403	GGGCAATCCCAGTGATC
chr3	138042240	138042241	chr3:138042241:T:G	rs139015678	T	G	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr3	138933430	138933431	chr3:138933431:G:T	rs12107433	G	T	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr3	139419399	139419400	chr3:139419400:C:G	rs1586863	C	G	C	Sox3.mouse_HMG_2	0	1	-	1.8540694197300487	1.5494359022058608	GGTCAATTGCCATGATG
chr3	139753788	139753789	chr3:139753789:A:G	rs11713418	A	G	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	139980968	139980969	chr3:139980969:T:C	rs9289594	T	C	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr3	140031622	140031623	chr3:140031623:T:G	rs9874196	T	G	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr3	140288620	140288621	chr3:140288621:A:G	rs62268001	A	G	A	Sox3.mouse_HMG_2	5	1	+	10.868837900002521	4.479556465624632	GATCAATTGTTTTGATT
chr3	140365946	140365947	chr3:140365947:T:G	rs3943277	T	G	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr3	140442997	140442998	chr3:140442998:A:C	rs11712249	A	C	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr3	140534119	140534120	chr3:140534120:C:T	rs16850427	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	140540594	140540595	chr3:140540595:C:T	rs349551	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr3	140629797	140629798	chr3:140629798:A:G	rs1696193	A	G	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr3	140711190	140711191	chr3:140711191:C:T	rs6439941	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr3	141012579	141012580	chr3:141012580:T:C	rs957093	T	C	T	Sox3.mouse_HMG_2	12	1	+	3.6675865471893685	-2.3833805907414485	TGTCAATTCTAATGGTC
chr3	141274868	141274869	chr3:141274869:T:C	rs11715472	T	C	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr3	141424777	141424778	chr3:141424778:A:G	rs79197573	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr3	141465355	141465356	chr3:141465356:T:C	rs75088737	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	141488255	141488256	chr3:141488256:G:T	chr3:141488256:G:T	G	T	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr3	141710566	141710567	chr3:141710567:A:G	rs16851689	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr3	141715938	141715939	chr3:141715939:T:A	rs111515372	T	A	T	Sox3.mouse_HMG_2	15	1	+	11.341613155660983	9.0382234622023	TATTAATTTTATTGATC
chr3	142073588	142073589	chr3:142073589:G:A	rs73232677	G	A	g	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr3	142115941	142115942	chr3:142115942:C:T	rs62284574	C	T	T	Sox3.mouse_HMG_2	3	1	+	4.930157791983343	0.0733019167611213	AGTCAATTATATTGTAC
chr3	142147944	142147945	chr3:142147945:C:T	rs73236053	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr3	142609305	142609306	chr3:142609306:T:G	rs1312395745	T	G	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr3	142896990	142896991	chr3:142896991:A:G	rs77195961	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr3	142897032	142897033	chr3:142897033:G:C	rs73864501	G	C	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr3	143224182	143224183	chr3:143224183:A:G	rs6440154	A	G	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr3	143763273	143763274	chr3:143763274:C:T	rs77716158	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr3	143825575	143825576	chr3:143825576:C:T	rs1823221	C	T	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr3	144037344	144037345	chr3:144037345:C:G	rs1025984	C	G	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	144263718	144263719	chr3:144263719:T:C	rs17670978	T	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr3	144273724	144273725	chr3:144273725:T:C	rs75058573	T	C	.	Sox3.mouse_HMG_2	6	1	+	5.8651215580101725	-0.5241598763677168	CATTAATTGTATTTATG
chr3	144385287	144385288	chr3:144385288:T:C	rs1725546	T	C	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr3	145002912	145002913	chr3:145002913:C:T	rs9875246	C	T	C	Sox3.mouse_HMG_2	3	1	+	8.61849908687488	3.7616432116526566	GATCAATGTCATGGTTT
chr3	145269110	145269111	chr3:145269111:A:G	rs1445372	A	G	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr3	145277684	145277685	chr3:145277685:T:C	rs62274798	T	C	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr3	145581596	145581597	chr3:145581597:T:C	rs1527732	T	C	T	Sox3.mouse_HMG_2	16	1	+	2.1204924015531255	0.5174993518926745	GATCCATGTTCTTGACT
chr3	145754135	145754136	chr3:145754136:G:A	rs2461810	G	A	G	Sox3.mouse_HMG_2	8	1	-	2.714009906141193	3.968431872296863	GAACAACTCCAGTGAAA
chr3	145903539	145903540	chr3:145903540:T:C	rs6769191	T	C	T	Sox3.mouse_HMG_2	11	1	+	8.368519435036621	1.6841452355762836	AATCAAGTCTATTGATG
chr3	146069869	146069870	chr3:146069870:G:A	rs3792347	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr3	146094177	146094178	chr3:146094178:A:G	rs116539997	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr3	146234930	146234931	chr3:146234931:T:C	rs9840954	T	C	T	Sox3.mouse_HMG_2	5	1	-	5.034567831402587	-1.3547136029753035	TTTCAATGTCAGTTAGT
chr3	146234936	146234937	chr3:146234937:T:C	rs182524644	T	C	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr3	146496293	146496294	chr3:146496294:C:A	rs506974	C	A	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr3	146503410	146503411	chr3:146503411:T:A	rs512259	T	A	T	Sox3.mouse_HMG_2	5	1	-	3.477627303743955	-3.4304479240491013	CATCAACTATATTTATT
chr3	146507061	146507062	chr3:146507062:A:G	rs76838671	A	G	A	Sox3.mouse_HMG_2	4	1	+	6.25846794141596	-0.13081349296192862	CTTCAATTACATTGCTA
chr3	146542940	146542941	chr3:146542941:G:C	rs2738911	G	C	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	146547523	146547524	chr3:146547524:G:A	rs7625713	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr3	146640392	146640393	chr3:146640393:G:A	rs73159127	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr3	146640423	146640424	chr3:146640424:T:C	rs191248912	T	C	T	Sox3.mouse_HMG_2	5	1	-	7.616740117193733	1.227458682815844	TGTCTATGATATTGATG
chr3	146678218	146678219	chr3:146678219:A:G	rs11718101	A	G	G	Sox3.mouse_HMG_2	15	1	-	4.084769581862757	0.3049701643569606	CATTCATTTCAGTGATG
chr3	146681329	146681330	chr3:146681330:T:G	rs6804783	T	G	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr3	146682088	146682089	chr3:146682089:T:C	rs17370212	T	C	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr3	146697306	146697307	chr3:146697307:A:T	rs76261152	A	T	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr3	146715813	146715814	chr3:146715814:C:A	rs76033745	C	A	C	Sox3.mouse_HMG_2	8	1	-	2.8690422710221397	3.682680204026352	TATCAATGGTCTTGCAT
chr3	146715826	146715827	chr3:146715827:G:T	rs75795758	G	T	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr3	147937894	147937895	chr3:147937895:A:T	rs72999612	A	T	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr3	148148022	148148023	chr3:148148023:G:A	rs79132239	G	A	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	148643833	148643834	chr3:148643834:G:A	rs12496215	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr3	148756225	148756226	chr3:148756226:G:A	rs754650	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr3	148772493	148772494	chr3:148772494:C:T	rs2934114	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr3	148793009	148793010	chr3:148793010:C:T	rs6803439	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr3	148861357	148861358	chr3:148861358:T:C	rs73160782	T	C	T	Sox3.mouse_HMG_2	14	1	-	2.901126568540592	-0.4169397012310096	GAACACTGTTATAGATA
chr3	148968853	148968854	chr3:148968854:C:A	rs6764975	C	A	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr3	149027448	149027449	chr3:149027449:A:G	rs3347	A	G	A	Sox3.mouse_HMG_2	11	1	-	8.281389772998248	1.597015573537913	GGTTAATGCTATTGGTT
chr3	149324229	149324230	chr3:149324230:G:A	rs115360733	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr3	149469216	149469217	chr3:149469217:C:T	rs11927441	C	T	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr3	149519343	149519344	chr3:149519344:C:T	rs77702584	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr3	149540199	149540200	chr3:149540200:C:G	rs114457234	C	G	C	Sox3.mouse_HMG_2	13	1	-	7.5479622563832995	1.1607022174560873	GAGCAATTGCATTGTTG
chr3	149559710	149559711	chr3:149559711:A:T	rs713371	A	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr3	149575528	149575529	chr3:149575529:T:C	rs16862007	T	C	T	Sox3.mouse_HMG_2	15	1	+	3.200187845674242	-0.5796115718315539	CATCATGGATATTGATG
chr3	150105982	150105983	chr3:150105983:C:A	rs16862469	C	A	C	Sox3.mouse_HMG_2	13	1	-	4.120481986339983	-2.266778052587229	CAGCAATGACAGTGCTT
chr3	150107108	150107109	chr3:150107109:G:A	rs116021924	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr3	150286778	150286779	chr3:150286779:C:T	rs80191595	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr3	150286801	150286802	chr3:150286802:T:C	rs78157678	T	C	C	Sox3.mouse_HMG_2	5	1	-	2.4007980589875397	-3.9884833753903477	GGTGGATTTTAGTGATG
chr3	150286826	150286827	chr3:150286827:C:T	chr3:150286827:C:T	C	T	c	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr3	150326095	150326096	chr3:150326096:G:T	rs17270909	G	T	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	150326113	150326114	chr3:150326114:A:C	rs34578019	A	C	C	Sox3.mouse_HMG_2	12	1	-	2.8181035443595586	-3.5684851283121577	GTTCAATGGTAGTTTTC
chr3	150511135	150511136	chr3:150511136:T:C	rs9846069	T	C	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr3	150613948	150613949	chr3:150613949:A:G	rs796411626	A	G	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr3	150799123	150799124	chr3:150799124:A:G	rs6440698	A	G	a	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr3	151171381	151171382	chr3:151171382:A:G	rs58593708	A	G	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	151171397	151171398	chr3:151171398:A:G	rs75036711	A	G	A	Sox3.mouse_HMG_2	6	1	-	1.3170219100546936	-5.072259524323195	TATCCATGTCCTTGAGG
chr3	151219133	151219134	chr3:151219134:T:C	rs6767615	T	C	T	Sox3.mouse_HMG_2	6	1	+	2.970917399663889	-3.418364034713999	TGTCAATGCCAAAGATT
chr3	151281762	151281763	chr3:151281763:C:T	rs62283018	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	151281791	151281792	chr3:151281792:G:C	rs73023058	G	C	C	Sox3.mouse_HMG_2	1	1	-	2.512425932917612	3.221479527242094	TCTAAATGGTATTGGAG
chr3	151468529	151468530	chr3:151468530:G:T	rs140503762	G	T	G	Sox3.mouse_HMG_2	7	1	+	3.1326411183477734	2.0067499045025277	TGATAATGGCATTGACG
chr3	151468544	151468545	chr3:151468545:C:T	rs184639055	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr3	151478871	151478872	chr3:151478872:T:C	rs4296566	T	C	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	151596463	151596464	chr3:151596464:A:T	rs9858372	A	T	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr3	151787767	151787768	chr3:151787768:T:C	rs6440785	T	C	-	Sox3.mouse_HMG_2	15	1	+	4.2159559226105	0.4361565051047049	TGTCAGTGTTAATGATG
chr3	151842079	151842080	chr3:151842080:C:G	chr3:151842080:C:G	C	G	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr3	151842082	151842083	chr3:151842083:G:C	chr3:151842083:G:C	G	C	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	151864799	151864800	chr3:151864800:G:C	rs140616383	G	C	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr3	152121006	152121007	chr3:152121007:C:T	rs78806142	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr3	152209104	152209105	chr3:152209105:C:G	rs323630	C	G	C	Sox3.mouse_HMG_2	16	1	-	8.53403471926336	7.294763359236854	GTTCAATGTCAGAGATG
chr3	152322634	152322635	chr3:152322635:G:A	rs12631193	G	A	A	Sox3.mouse_HMG_2	1	1	+	6.124135928362774	8.13052387038223	TGACAGTTTTATTGATT
chr3	152606320	152606321	chr3:152606321:T:G	rs2141601	T	G	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr3	152606346	152606347	chr3:152606347:T:C	rs2141602	T	C	T	Sox3.mouse_HMG_2	5	1	-	5.953134196115207	-0.43614723826268226	CCTCAATGTTAGAGAGA
chr3	152745846	152745847	chr3:152745847:C:T	rs78962609	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr3	152745872	152745873	chr3:152745873:T:C	rs1461167	T	C	T	Sox3.mouse_HMG_2	12	1	+	4.449112197753335	-1.601854940177482	GGTCAATGCTAATGGGT
chr3	152965383	152965384	chr3:152965384:T:C	rs1916276	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr3	153094614	153094615	chr3:153094615:T:A	rs9877520	T	A	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr3	153131119	153131120	chr3:153131120:G:A	rs9865931	G	A	g	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr3	153296206	153296207	chr3:153296207:T:A	rs7641790	T	A	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr3	153401059	153401060	chr3:153401060:G:A	rs4680059	G	A	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr3	153624998	153624999	chr3:153624999:T:C	rs566925389	T	C	T	Sox3.mouse_HMG_2	14	1	+	7.340546787580806	5.327399693740805	GTACAATTCTATTGTTT
chr3	153769075	153769076	chr3:153769076:A:T	rs73001073	A	T	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr3	153784367	153784368	chr3:153784368:T:G	rs112020316	T	G	t	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr3	154009853	154009854	chr3:154009854:T:C	rs6790292	T	C	.	Sox3.mouse_HMG_2	1	1	-	3.3613645874982807	1.3549766454788226	CATTAATTTTATGGGTG
chr3	154023945	154023946	chr3:154023946:G:A	rs11717851	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr3	154241238	154241239	chr3:154241239:G:T	rs181443	G	T	G	Sox3.mouse_HMG_2	13	1	+	2.422088216577589	-3.9651718223496224	GACCAATGTTTTTGTTT
chr3	155420856	155420857	chr3:155420857:G:C	rs147703383	G	C	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr3	155753259	155753260	chr3:155753260:T:C	rs9818179	T	C	T	Sox3.mouse_HMG_2	12	1	+	6.8788195056955495	0.8278523677647336	ACTCAATTTCATTGCTA
chr3	156216789	156216790	chr3:156216790:T:G	rs188443344	T	G	T	Sox3.mouse_HMG_2	16	1	-	4.172189961173316	3.1444930276320617	TCTCAATTTCTTTGAGA
chr3	156341458	156341459	chr3:156341459:C:A	rs142225903	C	A	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr3	156561140	156561141	chr3:156561141:A:G	rs6808173	A	G	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr3	156617881	156617882	chr3:156617882:G:C	rs59343105	G	C	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr3	156617923	156617924	chr3:156617924:T:C	rs2176618	T	C	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr3	156796450	156796451	chr3:156796451:T:C	rs73019748	T	C	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr3	157099726	157099727	chr3:157099727:C:G	rs2306532	C	G	G	Sox3.mouse_HMG_2	1	1	-	6.607344617948005	5.898291023623523	TGTAAATGATAGTGATT
chr3	157161022	157161023	chr3:157161023:G:A	rs879945711	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr3	157469682	157469683	chr3:157469683:A:G	rs139929911	A	G	a	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr3	157469704	157469705	chr3:157469705:C:A	rs2316337	C	A	c	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr3	157767986	157767987	chr3:157767987:A:G	rs807200	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.8782974180272167	-3.5109840163506716	CCTCAATGTTAGCCATT
chr3	157824513	157824514	chr3:157824514:A:G	rs6794184	A	G	A	Sox3.mouse_HMG_2	15	1	-	3.901679696749875	0.12188027924407911	TTTTAATTTAATTGATG
chr3	157832945	157832946	chr3:157832946:A:G	rs9854683	A	G	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr3	158104879	158104880	chr3:158104880:T:C	rs1915940	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr3	158388041	158388042	chr3:158388042:T:C	rs7641036	T	C	T	Sox3.mouse_HMG_2	14	1	-	5.864693623522264	2.546627353750663	TATTAATTTCATTTATT
chr3	158463729	158463730	chr3:158463730:T:G	rs55705928	T	G	T	Sox3.mouse_HMG_2	5	1	-	3.880765415590087	-3.0273098122029687	TAATTATGTTATTGATT
chr3	158741669	158741670	chr3:158741670:T:C	rs6788069	T	C	t	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr3	158912137	158912138	chr3:158912138:C:T	rs340226	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr3	159310898	159310899	chr3:159310899:C:T	rs2595253	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr3	159604453	159604454	chr3:159604454:C:T	rs111392488	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr3	159919952	159919953	chr3:159919953:G:A	chr3:159919953:G:A	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr3	159945181	159945182	chr3:159945182:C:T	rs9818736	C	T	C	Sox3.mouse_HMG_2	7	1	-	2.6926872195861793	-3.9361342755018773	AGTCAATGGCAGTATTG
chr3	160099407	160099408	chr3:160099408:A:G	rs73012068	A	G	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr3	160343356	160343357	chr3:160343357:G:A	rs6441314	G	A	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr3	160434287	160434288	chr3:160434288:T:C	rs3773371	T	C	T	Sox3.mouse_HMG_2	9	1	+	5.258829049513941	4.566176506641981	TCTGAATTATAGTGATG
chr3	160477940	160477941	chr3:160477941:T:C	rs13314803	T	C	t	Sox3.mouse_HMG_2	2	1	+	4.0065075151290985	-2.3603897913966465	CCTGAATGCCAGTGAGA
chr3	160936592	160936593	chr3:160936593:T:C	rs73158217	T	C	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr3	161057462	161057463	chr3:161057463:A:T	rs1037888	A	T	T	Sox3.mouse_HMG_2	5	1	+	4.81111506427847	-2.0969601635145882	TGTCAACTTTATTGTTA
chr3	161291874	161291875	chr3:161291875:G:A	rs74462689	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr3	161338505	161338506	chr3:161338506:G:A	rs1036142192	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr3	161671024	161671025	chr3:161671025:C:T	rs1588908	C	T	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr3	162022293	162022294	chr3:162022294:A:G	rs9827385	A	G	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr3	162073610	162073611	chr3:162073611:T:C	rs12696134	T	C	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr3	162073654	162073655	chr3:162073655:C:T	rs73018723	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr3	162100955	162100956	chr3:162100956:T:G	rs1397227	T	G	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr3	162766284	162766285	chr3:162766285:T:A	rs13098850	T	A	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr3	162936635	162936636	chr3:162936636:A:G	rs3912608	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr3	163180822	163180823	chr3:163180823:T:C	rs1873643	T	C	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr3	163422689	163422690	chr3:163422690:T:C	rs2612728	T	C	C	Sox3.mouse_HMG_2	8	1	+	6.6799334198192835	5.4255114536636135	CATCCATTTTAGTGGTT
chr3	163954913	163954914	chr3:163954914:C:T	rs12489788	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr3	164049390	164049391	chr3:164049391:T:G	rs10936394	T	G	G	Sox3.mouse_HMG_2	14	1	-	2.9559063271979054	-3.07662229039074	CATGAATGTTATCGACA
chr3	165463758	165463759	chr3:165463759:T:C	rs73167338	T	C	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	166110086	166110087	chr3:166110087:C:G	rs4299439	C	G	G	Sox3.mouse_HMG_2	0	1	+	7.663814852617338	7.968448370141526	CGTCAATGCCAGAGATG
chr3	166223506	166223507	chr3:166223507:G:A	rs9863485	G	A	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr3	166223536	166223537	chr3:166223537:T:C	rs34423841	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.813907206556043	-3.5753742278218477	CCTCCATGCTAGTGAGC
chr3	166274336	166274337	chr3:166274337:A:T	rs6771920	A	T	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr3	166857610	166857611	chr3:166857611:A:T	rs13099376	A	T	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr3	167067916	167067917	chr3:167067917:A:G	rs1464281	A	G	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr3	167651340	167651341	chr3:167651341:A:G	rs2420024	A	G	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr3	167733328	167733329	chr3:167733329:A:G	rs9861088	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr3	168211888	168211889	chr3:168211889:C:T	rs16851992	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr3	168460190	168460191	chr3:168460191:A:T	rs2555511	A	T	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr3	168576748	168576749	chr3:168576749:A:G	rs3844593	A	G	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr3	168722456	168722457	chr3:168722457:G:A	rs963969	G	A	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr3	168801830	168801831	chr3:168801831:A:G	rs553801	A	G	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr3	168804003	168804004	chr3:168804004:T:G	rs526766	T	G	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr3	168863702	168863703	chr3:168863703:A:G	rs7633280	A	G	A	Sox3.mouse_HMG_2	16	1	-	4.501608658750262	2.898615609089812	TAAAAATGGCATTGAGT
chr3	168877681	168877682	chr3:168877682:A:G	rs986738	A	G	A	Sox3.mouse_HMG_2	7	1	-	7.583214010023694	2.0802837287808824	CAGTAATTTCATTGATT
chr3	168950566	168950567	chr3:168950567:T:C	rs79034214	T	C	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr3	168950580	168950581	chr3:168950581:G:C	rs16852876	G	C	G	Sox3.mouse_HMG_2	5	1	+	4.382979654596437	3.8641858611812676	TATAAGTGCTATTGATT
chr3	169249985	169249986	chr3:169249986:A:G	rs141686554	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr3	170197164	170197165	chr3:170197165:T:G	rs1798239	T	G	G	Sox3.mouse_HMG_2	11	1	+	12.542663891401565	11.162141713987742	GCACAATGGTATTGATG
chr3	170857762	170857763	chr3:170857763:C:T	rs60147413	C	T	c	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr3	170978733	170978734	chr3:170978734:A:G	rs114317794	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr3	171191651	171191652	chr3:171191652:T:C	rs67023727	T	C	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr3	171561874	171561875	chr3:171561875:T:C	rs17419458	T	C	T	Sox3.mouse_HMG_2	12	1	+	2.4388021708723957	-3.6121649670584204	GCTCTATGATATTGTTC
chr3	171705175	171705176	chr3:171705176:T:C	rs7632491	T	C	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr3	171732357	171732358	chr3:171732358:T:C	rs1921345	T	C	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr3	171732389	171732390	chr3:171732390:G:T	rs1921344	G	T	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr3	172085188	172085189	chr3:172085189:C:T	rs9841998	C	T	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr3	172298396	172298397	chr3:172298397:C:A	chr3:172298397:C:A	C	A	C	Sox3.mouse_HMG_2	3	1	+	5.295895345601684	-1.6047748936572228	GATCATTTTTATTCATT
chr3	172691439	172691440	chr3:172691440:T:G	rs77399448	T	G	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr3	173275096	173275097	chr3:173275097:T:A	rs13065716	T	A	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr3	173617352	173617353	chr3:173617353:T:A	rs77592068	T	A	T	Sox3.mouse_HMG_2	14	1	-	2.9897608222744667	-1.0296207014741785	TGTGAATGCTATAGATA
chr3	173662169	173662170	chr3:173662170:T:A	rs4894451	T	A	T	Sox3.mouse_HMG_2	1	1	-	5.528669191377823	2.8334456323245236	CATCAATGCTTGTGAGC
chr3	173743492	173743493	chr3:173743493:T:A	rs12489631	T	A	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr3	173872304	173872305	chr3:173872305:T:C	rs1021302	T	C	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr3	174156594	174156595	chr3:174156595:G:A	rs1421428	G	A	G	Sox3.mouse_HMG_2	13	1	+	7.186258609842989	1.1346201056566771	TATCAAAGGTATTGTTT
chr3	174216858	174216859	chr3:174216859:G:A	rs6764226	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr3	174225890	174225891	chr3:174225891:A:G	rs4894466	A	G	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr3	174404956	174404957	chr3:174404957:C:T	rs60437291	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr3	174618957	174618958	chr3:174618958:C:T	rs541566	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr3	174618969	174618970	chr3:174618970:G:A	rs576894	G	A	A	Sox3.mouse_HMG_2	11	1	+	2.774119311977357	-1.7973648163559284	TTTCAATGGTTGTGACA
chr3	174701093	174701094	chr3:174701094:G:C	rs9866752	G	C	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr3	174776482	174776483	chr3:174776483:A:G	rs146065168	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr3	175194505	175194506	chr3:175194506:A:C	rs7632203	A	C	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr3	175199209	175199210	chr3:175199210:C:A	rs9883893	C	A	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr3	175231752	175231753	chr3:175231753:C:A	rs35675620	C	A	A	Sox3.mouse_HMG_2	11	1	+	9.661295036789914	10.39366293050314	TGTCAATGTTACTGATA
chr3	175231765	175231766	chr3:175231766:A:G	rs6795681	A	G	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr3	175301807	175301808	chr3:175301808:T:A	rs12633108	T	A	T	Sox3.mouse_HMG_2	7	1	-	3.1384644410418727	8.641394722284684	CATCAAAATTATTGAGT
chr3	175411831	175411832	chr3:175411832:A:T	rs9879366	A	T	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr3	175495740	175495741	chr3:175495741:T:A	rs2193844	T	A	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr3	175685789	175685790	chr3:175685790:G:A	rs150823927	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr3	176595472	176595473	chr3:176595473:T:C	rs9848490	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr3	176789799	176789800	chr3:176789800:C:T	rs9829964	C	T	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr3	176789814	176789815	chr3:176789815:C:A	rs9829973	C	A	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr3	176976777	176976778	chr3:176976778:A:G	rs41333946	A	G	A	Sox3.mouse_HMG_2	2	1	-	3.507313394038739	-2.8595839124870035	GATGAATGGCGGTGATG
chr3	177104887	177104888	chr3:177104888:T:G	rs1201289	T	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	177106287	177106288	chr3:177106288:A:C	rs62296570	A	C	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr3	177193682	177193683	chr3:177193683:T:C	rs10936936	T	C	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr3	177446631	177446632	chr3:177446632:C:T	rs188790085	C	T	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr3	177624679	177624680	chr3:177624680:T:C	rs1875102	T	C	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr3	177773453	177773454	chr3:177773454:T:C	rs9829938	T	C	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr3	177852045	177852046	chr3:177852046:C:T	rs74732742	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr3	177905971	177905972	chr3:177905972:G:A	rs114408330	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr3	178037108	178037109	chr3:178037109:G:T	rs116830151	G	T	G	Sox3.mouse_HMG_2	3	1	-	5.762435634179504	-1.138234605079399	TGACAATTTTATTCATG
chr3	178063902	178063903	chr3:178063903:T:C	rs75453969	T	C	T	Sox3.mouse_HMG_2	1	1	-	5.400349276157534	3.3939613341380768	TACTAATTGTATTGATG
chr3	178100857	178100858	chr3:178100858:T:A	rs12487093	T	A	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr3	178100863	178100864	chr3:178100864:C:T	rs62284022	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr3	178174360	178174361	chr3:178174361:T:C	rs75380256	T	C	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr3	178387218	178387219	chr3:178387219:T:C	rs6804751	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr3	178568475	178568476	chr3:178568476:A:G	rs16829780	A	G	A	Sox3.mouse_HMG_2	16	1	+	8.608925266823455	8.820499693308706	CATAAATGCCAGTGATA
chr3	179658003	179658004	chr3:179658004:G:C	rs556868621	G	C	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr3	179954036	179954037	chr3:179954037:C:T	rs6804380	C	T	T	Sox3.mouse_HMG_2	9	1	+	2.558865931671472	3.25151847454343	TCTCAATGTCGTTAATT
chr3	180833425	180833426	chr3:180833426:C:T	rs1879248	C	T	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr3	181561095	181561096	chr3:181561096:A:C	rs140529710	A	C	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr3	182358858	182358859	chr3:182358859:A:G	rs16833062	A	G	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr3	182761193	182761194	chr3:182761194:C:T	chr3:182761194:C:T	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr3	182803338	182803339	chr3:182803339:C:T	rs12696497	C	T	T	Sox3.mouse_HMG_2	15	1	+	4.136147443029662	7.915946860535458	CCTCAATTTCATTCACA
chr3	182803354	182803355	chr3:182803355:G:T	rs12696498	G	T	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr3	183052478	183052479	chr3:183052479:T:C	rs62293212	T	C	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	183144346	183144347	chr3:183144347:A:G	rs79155994	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr3	183386033	183386034	chr3:183386034:T:C	rs16857427	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr3	183469458	183469459	chr3:183469459:G:A	rs76187054	G	A	G	Sox3.mouse_HMG_2	10	1	+	3.261273816613924	10.170028595929146	TTTCAATTCTGTTGGTG
chr3	183580543	183580544	chr3:183580544:T:C	rs4066036	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr3	183880209	183880210	chr3:183880210:A:C	rs9290776	A	C	A	Sox3.mouse_HMG_2	12	1	-	2.245144415062092	-4.141444257609623	CATCCATTTTATTGCGG
chr3	183883709	183883710	chr3:183883710:T:C	rs2056332	T	C	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr3	184353228	184353229	chr3:184353229:G:A	rs41266265	G	A	g	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr3	184353230	184353231	chr3:184353231:T:C	rs11920716	T	C	t	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr3	184464157	184464158	chr3:184464158:T:C	rs7433258	T	C	T	Sox3.mouse_HMG_2	5	1	+	2.2607955964183826	2.2607955964183826	GGTCATTGGGAGTGATG
chr3	184549951	184549952	chr3:184549952:A:G	rs6784596	A	G	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	184549989	184549990	chr3:184549990:G:A	rs57476809	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr3	184620425	184620426	chr3:184620426:T:A	rs4621307	T	A	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr3	184637316	184637317	chr3:184637317:C:T	rs4074989	C	T	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr3	184637334	184637335	chr3:184637335:A:G	rs4074988	A	G	A	Sox3.mouse_HMG_2	15	1	-	4.460606998768816	0.6808075812630211	GCACAGTTTTAGTGATG
chr3	184800591	184800592	chr3:184800592:T:C	rs6786934	T	C	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	185046642	185046643	chr3:185046643:C:T	rs62289505	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	185582606	185582607	chr3:185582607:G:A	rs7651346	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr3	185919951	185919952	chr3:185919952:T:C	rs16860329	T	C	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr3	186177129	186177130	chr3:186177130:C:T	rs2090394	C	T	C	Sox3.mouse_HMG_2	15	1	-	2.3091757700168847	2.7429132212782257	TAACAAGGCCAGTGAGG
chr3	186697766	186697767	chr3:186697767:C:T	rs62292606	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr3	186721739	186721740	chr3:186721740:C:T	rs1648716	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.979713482891651	-3.07192502129466	ACTCAACTTCAGTGAGT
chr3	186786351	186786352	chr3:186786352:T:G	rs539100607	T	G	.	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr3	186786358	186786359	chr3:186786359:T:C	rs266718	T	C	.	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr3	186860684	186860685	chr3:186860685:C:T	rs7639352	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr3	186922877	186922878	chr3:186922878:G:A	rs76909280	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr3	186922898	186922899	chr3:186922899:T:A	rs71322421	T	A	T	Sox3.mouse_HMG_2	4	1	-	2.420076060521569	-4.487999167271488	CAACAGTCTCATTGATT
chr3	186966504	186966505	chr3:186966505:C:G	rs3864107	C	G	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr3	187183210	187183211	chr3:187183211:A:G	rs12491229	A	G	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr3	187507729	187507730	chr3:187507730:C:T	rs7631523	C	T	T	Sox3.mouse_HMG_2	3	1	+	7.7249653549675115	2.8681094797452884	AATCAACGTTATTGAAC
chr3	187699925	187699926	chr3:187699926:C:T	rs11928175	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr3	187829125	187829126	chr3:187829126:C:T	rs73886595	C	T	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr3	187839702	187839703	chr3:187839703:T:C	rs59161098	T	C	T	Sox3.mouse_HMG_2	12	1	+	2.5734782592564924	-3.4774888786743237	GGTCACTGATATTGGAA
chr3	187850404	187850405	chr3:187850405:G:A	rs6791207	G	A	G	Sox3.mouse_HMG_2	8	1	-	8.304295418489968	9.55871738464564	GCTCAATGCCATGGATG
chr3	187878955	187878956	chr3:187878956:G:T	rs6788294	G	T	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr3	187887526	187887527	chr3:187887527:C:T	rs6444265	C	T	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	187900351	187900352	chr3:187900352:T:C	rs546343	T	C	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr3	187906121	187906122	chr3:187906122:A:G	rs9832302	A	G	A	Sox3.mouse_HMG_2	6	1	-	2.623848053254395	-3.7654333811234957	AATCCATGACAGTGTTG
chr3	187958374	187958375	chr3:187958375:G:A	rs2679509	G	A	A	Sox3.mouse_HMG_2	8	1	+	2.8153569908535343	1.5965666061090384	TATAAAATGTATTGATG
chr3	188111372	188111373	chr3:188111373:A:C	rs13080242	A	C	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr3	188155120	188155121	chr3:188155121:A:G	rs76444825	A	G	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	188202588	188202589	chr3:188202589:A:G	rs141698035	A	G	A	Sox3.mouse_HMG_2	15	1	-	2.56415479609291	-1.2156446214128853	GATCAACTGCAGTCATG
chr3	188248068	188248069	chr3:188248069:C:T	rs74320538	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr3	188341654	188341655	chr3:188341655:A:G	rs13076750	A	G	G	Sox3.mouse_HMG_2	15	1	-	4.9090644155916845	1.1292649980858895	CTGCAATGCTAGTGTTT
chr3	188503800	188503801	chr3:188503801:C:T	rs4333076	C	T	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr3	188695330	188695331	chr3:188695331:A:C	rs9864066	A	C	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr3	188707513	188707514	chr3:188707514:A:G	rs78983178	A	G	A	Sox3.mouse_HMG_2	5	1	+	5.202369769247644	-1.186911665130245	TGTCAATGCTACTGACT
chr3	188707517	188707518	chr3:188707518:T:C	rs1409546222	T	C	T	Sox3.mouse_HMG_2	9	1	+	5.202369769247644	4.509717226375683	TGTCAATGCTACTGACT
chr3	188719878	188719879	chr3:188719879:T:C	rs145155147	T	C	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr3	188826622	188826623	chr3:188826623:G:C	rs9867093	G	C	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr3	188889281	188889282	chr3:188889282:C:T	rs76971802	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr3	188911560	188911561	chr3:188911561:G:C	rs188496785	G	C	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr3	189205579	189205580	chr3:189205580:A:G	rs6783147	A	G	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	189334757	189334758	chr3:189334758:C:T	rs78307847	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr3	189393645	189393646	chr3:189393646:C:A	rs150647469	C	A	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr3	189512414	189512415	chr3:189512415:A:G	rs1364593	A	G	G	Sox3.mouse_HMG_2	2	1	+	3.2118841714794417	1.3396662805830881	GAACAATGCAATTGGAG
chr3	189531814	189531815	chr3:189531815:A:G	rs7615576	A	G	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr3	189562847	189562848	chr3:189562848:G:A	rs9859170	G	A	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr3	189938491	189938492	chr3:189938492:T:A	rs710531	T	A	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr3	189941344	189941345	chr3:189941345:G:A	rs149842890	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr3	190807726	190807727	chr3:190807727:A:G	rs9870207	A	G	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr3	191085264	191085265	chr3:191085265:G:A	rs185639314	G	A	G	Sox3.mouse_HMG_2	7	1	+	3.859498974543276	-2.769322520544779	CATAAAAGTTAGTGATG
chr3	191240022	191240023	chr3:191240023:A:G	rs73199665	A	G	A	Sox3.mouse_HMG_2	2	1	-	2.490748603508553	-3.876148703017192	TGTCATTTTTATTGCTG
chr3	191276485	191276486	chr3:191276486:C:T	rs77925048	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr3	191282644	191282645	chr3:191282645:A:G	rs10937469	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr3	191356107	191356108	chr3:191356108:G:A	rs9985271	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr3	191398780	191398781	chr3:191398781:A:G	rs9840425	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr3	191775685	191775686	chr3:191775686:G:A	rs9860020	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr3	191926932	191926933	chr3:191926933:A:G	rs11914654	A	G	A	Sox3.mouse_HMG_2	12	1	-	3.2807207191293783	-2.770246418801438	ATTCTATTTCATTGGTT
chr3	192449188	192449189	chr3:192449189:C:T	rs141499968	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr3	192577611	192577612	chr3:192577612:A:G	rs61014673	A	G	A	Sox3.mouse_HMG_2	12	1	-	4.9865734483224085	-1.0643936896084074	CCTAAATTTTAGTGAAT
chr3	192734874	192734875	chr3:192734875:C:T	rs13061824	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr3	192797767	192797768	chr3:192797768:G:A	rs1061860	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr3	192805184	192805185	chr3:192805185:T:G	rs7646191	T	G	G	Sox3.mouse_HMG_2	2	1	+	3.277103974265253	-1.8767706924146386	TTTCATTTTTATTGGTC
chr3	192827410	192827411	chr3:192827411:G:A	rs138476913	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr3	192827412	192827413	chr3:192827413:C:T	rs7626121	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr3	193050026	193050027	chr3:193050027:G:A	rs77385366	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr3	193701835	193701836	chr3:193701836:C:T	rs73069792	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	193743616	193743617	chr3:193743617:C:G	rs78264903	C	G	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr3	193762770	193762771	chr3:193762771:T:C	rs11928384	T	C	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr3	193794713	193794714	chr3:193794714:A:G	rs472356	A	G	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr3	193794758	193794759	chr3:193794759:A:G	rs472450	A	G	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr3	193865502	193865503	chr3:193865503:T:C	rs115293330	T	C	T	Sox3.mouse_HMG_2	5	1	-	10.258170207411775	3.868888773033885	TTTCAATGGTAGTGACT
chr3	193932301	193932302	chr3:193932302:C:T	rs12485924	C	T	C	Sox3.mouse_HMG_2	13	1	-	4.435587756260442	-1.61605074792587	TGACTATGTCATTGATC
chr3	194211949	194211950	chr3:194211950:C:T	rs73073638	C	T	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr3	194246507	194246508	chr3:194246508:C:G	rs891571966	C	G	C	Sox3.mouse_HMG_2	0	1	-	6.481403083546718	6.17676956602253	GAACAATGCTATTGCAG
chr3	194307378	194307379	chr3:194307379:T:C	rs779090930	T	C	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr3	194383441	194383442	chr3:194383442:G:A	rs114068214	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	194383492	194383493	chr3:194383493:A:C	rs35639299	A	C	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr3	194458283	194458284	chr3:194458284:T:C	rs149174545	T	C	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	194572027	194572028	chr3:194572028:T:C	rs7611488	T	C	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr3	194572033	194572034	chr3:194572034:C:G	rs7648517	C	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr3	194723856	194723857	chr3:194723857:A:C	rs12330748	A	C	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr3	194723866	194723867	chr3:194723867:G:T	rs59552148	G	T	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr3	194723867	194723868	chr3:194723868:C:T	rs57512099	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr3	194767189	194767190	chr3:194767190:T:A	rs9857633	T	A	T	Sox3.mouse_HMG_2	4	1	-	2.0767349242657485	-4.831340303527309	CAGCAAGGCTATTGTTT
chr3	194787892	194787893	chr3:194787893:G:A	rs78095881	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr3	194797799	194797800	chr3:194797800:A:G	rs111270445	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.052073529041915	-2.6323006704184198	GCACAATGATATTGCTC
chr3	194935302	194935303	chr3:194935303:G:A	rs114512143	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr3	194935353	194935354	chr3:194935354:C:T	rs76127851	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr3	195042871	195042872	chr3:195042872:A:G	rs2676889	A	G	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr3	195068211	195068212	chr3:195068212:A:G	rs79640414	A	G	A	Sox3.mouse_HMG_2	2	1	-	7.161361407743485	0.7944641012177402	ACTCAATGCCATTGGAA
chr3	195098241	195098242	chr3:195098242:T:A	rs56371459	T	A	T	Sox3.mouse_HMG_2	12	1	+	6.056377553295066	0.005410415364248633	AATTAATGCCAGTGACT
chr3	195242464	195242465	chr3:195242465:T:C	rs544503982	T	C	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr3	195446505	195446506	chr3:195446506:C:T	rs78575501	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr3	195618956	195618957	chr3:195618957:A:G	rs2550229	A	G	g	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr3	195618957	195618958	chr3:195618958:G:A	rs147830733	G	A	a	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr3	195725008	195725009	chr3:195725009:A:G	rs142096782	A	G	N	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr3	195725009	195725010	chr3:195725010:G:A	rs2550230	G	A	N	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr3	195730017	195730018	chr3:195730018:G:A	rs6795171	G	A	g	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr3	195903940	195903941	chr3:195903941:C:T	rs6784831	C	T	C	Sox3.mouse_HMG_2	15	1	+	6.464636026908121	10.244435444413917	AATCAATGGTATTTACA
chr3	195906745	195906746	chr3:195906746:T:C	rs1871529	T	C	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr3	196143387	196143388	chr3:196143388:C:T	rs9832605	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr3	196169766	196169767	chr3:196169767:T:A	rs9876691	T	A	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr3	196219295	196219296	chr3:196219296:C:T	rs4916519	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr3	196278357	196278358	chr3:196278358:T:C	rs3772109	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr3	196501640	196501641	chr3:196501641:G:A	rs73219648	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr3	196508319	196508320	chr3:196508320:A:G	rs73891273	A	G	A	Sox3.mouse_HMG_2	10	1	+	9.585328867445737	2.676574088130516	ATTCAATTCCATTGAAG
chr3	196525135	196525136	chr3:196525136:G:A	rs7648243	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr3	196658626	196658627	chr3:196658627:A:G	rs1099215	A	G	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr3	196893972	196893973	chr3:196893973:G:A	rs6798086	G	A	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr3	196960016	196960017	chr3:196960017:C:T	rs73208209	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr3	197029012	197029013	chr3:197029013:G:T	rs536286734	G	T	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr3	197169521	197169522	chr3:197169522:T:C	rs1868890	T	C	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr3	197202927	197202928	chr3:197202928:T:G	rs9839886	T	G	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr3	197270604	197270605	chr3:197270605:T:A	rs403751	T	A	T	Sox3.mouse_HMG_2	16	1	+	6.46892022024273	5.893624104123534	CCTCAAATGTAGTGATT
chr3	197309120	197309121	chr3:197309121:T:A	rs76956850	T	A	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr3	197485852	197485853	chr3:197485853:C:T	rs9824358	C	T	C	Sox3.mouse_HMG_2	0	1	+	5.848031702985025	5.362896688730918	CTTGAATGGCATTGAGA
chr3	197601624	197601625	chr3:197601625:G:C	rs73087503	G	C	.	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr3	197808183	197808184	chr3:197808184:G:A	rs570303722	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr3	197900155	197900156	chr3:197900156:G:A	rs9862060	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr3	197900185	197900186	chr3:197900186:G:A	rs150688446	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr4	585579	585580	chr4:585580:T:C	rs35006826	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr4	651025	651026	chr4:651026:G:A	rs28374488	G	A	A	Sox3.mouse_HMG_2	7	1	+	1.2259561605759866	-5.402865334512071	TGTCAACGGCAGTGGGG
chr4	787521	787522	chr4:787522:A:G	rs190149527	A	G	a	Sox3.mouse_HMG_2	14	1	+	2.023060383380092	-1.2950058863915093	CCTCAAGTCCAGTGAGA
chr4	1417616	1417617	chr4:1417617:T:G	rs79570785	T	G	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr4	1509981	1509982	chr4:1509982:C:T	rs146842826	C	T	-	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr4	1524352	1524353	chr4:1524353:T:G	rs371390997	T	G	-	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr4	1524382	1524383	chr4:1524383:C:T	rs7671085	C	T	-	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr4	1524554	1524555	chr4:1524555:G:A	rs377403006	G	A	g	Sox3.mouse_HMG_2	3	1	-	11.047654380605602	6.19079850538338	AAACAATGCCAGTGATG
chr4	2193452	2193453	chr4:2193453:C:T	rs33914019	C	T	T	Sox3.mouse_HMG_2	3	1	+	2.8124055677670223	-2.0444503074552	GGTCACTGTTATTTATC
chr4	2268355	2268356	chr4:2268356:C:T	rs61789412	C	T	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr4	2360928	2360929	chr4:2360929:T:C	rs3135125	T	C	C	Sox3.mouse_HMG_2	10	1	-	3.8435290157408164	-3.065225763574405	GTAAAATGTCATTGAAT
chr4	2372012	2372013	chr4:2372013:G:T	rs762844	G	T	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr4	2852617	2852618	chr4:2852618:C:G	rs112078927	C	G	C	Sox3.mouse_HMG_2	0	1	-	2.200121281926593	1.8954877644024044	GGTCAGTGACATTGCTG
chr4	2929462	2929463	chr4:2929463:C:T	rs4968	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr4	3258426	3258427	chr4:3258427:T:C	rs3025796	T	C	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr4	3832140	3832141	chr4:3832141:G:A	rs28552809	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr4	3837729	3837730	chr4:3837730:G:A	rs4075005	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr4	3860112	3860113	chr4:3860113:G:A	rs34507541	G	A	G	Sox3.mouse_HMG_2	0	1	-	1.4435794484959803	0.9584444342418715	CAGCAATGCCAGGGAGG
chr4	3927139	3927140	chr4:3927140:C:A	rs116678517	C	A	-	Sox3.mouse_HMG_2	0	1	-	5.536570129424976	4.746801597646679	GATCTATGTTCTTGATG
chr4	4146740	4146741	chr4:4146741:G:A	rs41448044	G	A	-	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr4	4284990	4284991	chr4:4284991:T:A	rs3775340	T	A	T	Sox3.mouse_HMG_2	12	1	+	6.380601077578718	0.3296339396479013	GATCACTGCCAGTGAGG
chr4	4296842	4296843	chr4:4296843:A:G	rs2980167	A	G	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr4	4303172	4303173	chr4:4303173:A:G	rs114864148	A	G	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr4	4438711	4438712	chr4:4438712:T:C	rs28433883	T	C	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr4	4545195	4545196	chr4:4545196:A:G	rs13115084	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.7151494415432578	-2.6741319928346314	GATCAACTGTATTGGCA
chr4	4594356	4594357	chr4:4594357:C:G	rs751263	C	G	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr4	4694535	4694536	chr4:4694536:G:C	rs149993160	G	C	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr4	4990112	4990113	chr4:4990113:A:G	rs75292251	A	G	A	Sox3.mouse_HMG_2	12	1	-	6.795756769549245	0.7447896316184281	GTTCAAGGTTATTGGTT
chr4	5079830	5079831	chr4:5079831:G:A	rs6841845	G	A	G	Sox3.mouse_HMG_2	0	1	-	4.45368138898676	3.9685463747326515	CATCAGTTTCATTCATG
chr4	5157404	5157405	chr4:5157405:C:T	rs67749484	C	T	C	Sox3.mouse_HMG_2	9	1	+	3.3218398759780237	4.014492418849984	GATGATTTCCATTGATG
chr4	5644092	5644093	chr4:5644093:T:A	rs62297514	T	A	T	Sox3.mouse_HMG_2	1	1	-	2.531233042148676	-0.16399051690462235	CATCAATGCTGTAGAAG
chr4	5780563	5780564	chr4:5780564:A:T	rs7666126	A	T	A	Sox3.mouse_HMG_2	2	1	+	6.100116948084198	9.381773723867736	TAACAATTATATTTATT
chr4	6232482	6232483	chr4:6232483:A:C	rs16838435	A	C	A	Sox3.mouse_HMG_2	9	1	-	2.8632953483104138	-3.1206859115739047	GATCAATGCTGTTCAAT
chr4	6466091	6466092	chr4:6466092:T:C	rs55711322	T	C	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr4	6466093	6466094	chr4:6466094:T:G	rs34618602	T	G	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr4	6688085	6688086	chr4:6688086:C:A	rs56077078	C	A	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr4	6688124	6688125	chr4:6688125:C:T	rs115737237	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr4	6891899	6891900	chr4:6891900:A:G	rs4270587	A	G	A	Sox3.mouse_HMG_2	12	1	-	3.60498666565655	-2.445980472274266	GATATATGTTATTGAAT
chr4	6891905	6891906	chr4:6891906:A:G	rs7438890	A	G	G	Sox3.mouse_HMG_2	6	1	-	3.60498666565655	-2.7842947687213413	GATATATGTTATTGAAT
chr4	6988841	6988842	chr4:6988842:C:G	rs66519732	C	G	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr4	7004623	7004624	chr4:7004624:C:G	rs80057871	C	G	C	Sox3.mouse_HMG_2	7	1	-	2.125603931047048	-4.503217564041011	CATCACTGCTATTTAGT
chr4	7110948	7110949	chr4:7110949:G:T	rs4082846	G	T	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr4	7184548	7184549	chr4:7184549:G:A	rs10027707	G	A	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr4	7655679	7655680	chr4:7655680:A:C	rs144096524	A	C	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr4	7705070	7705071	chr4:7705071:T:C	rs6446613	T	C	T	Sox3.mouse_HMG_2	16	1	-	3.9387568065101313	4.150331232995382	GCTTAATTACATTGACA
chr4	7705077	7705078	chr4:7705078:G:A	rs6849439	G	A	G	Sox3.mouse_HMG_2	9	1	-	3.9387568065101313	4.631409349382091	GCTTAATTACATTGACA
chr4	7841700	7841701	chr4:7841701:G:A	rs4689168	G	A	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr4	8147742	8147743	chr4:8147743:G:A	rs11734190	G	A	G	Sox3.mouse_HMG_2	16	1	-	5.54654955591323	7.14954260557368	GTTCAATGTCAGTGTCC
chr4	8307569	8307570	chr4:8307570:G:A	rs28360829	G	A	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr4	8307570	8307571	chr4:8307571:A:G	rs192055597	A	G	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr4	8377089	8377090	chr4:8377090:G:A	rs189323262	G	A	G	Sox3.mouse_HMG_2	1	1	+	3.891232299286236	5.8976202413056935	CGATAATTCCATTGAAT
chr4	8741793	8741794	chr4:8741794:T:C	rs151138613	T	C	T	Sox3.mouse_HMG_2	8	1	+	3.0061714152748893	1.7517494491192176	AATCAATGTCTGTGCTT
chr4	8763749	8763750	chr4:8763750:G:A	rs36174159	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr4	8780056	8780057	chr4:8780057:C:T	rs144433760	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr4	8865790	8865791	chr4:8865791:C:T	rs77724733	C	T	c	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr4	8873459	8873460	chr4:8873460:C:A	rs7293284	C	A	c	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr4	9151731	9151732	chr4:9151732:T:A	rs35796658	T	A	N	Sox3.mouse_HMG_2	10	1	-	3.3573143708521758	-3.5514404084630455	GTTCAAAGTTATTGTGT
chr4	9381520	9381521	chr4:9381521:T:C	rs115761655	T	C	t	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr4	9529340	9529341	chr4:9529341:G:T	rs28716737	G	T	g	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr4	9529352	9529353	chr4:9529353:C:T	rs9761072	C	T	c	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr4	9690877	9690878	chr4:9690878:C:T	rs6814274	C	T	t	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr4	9914555	9914556	chr4:9914556:T:C	rs7674711	T	C	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr4	9965166	9965167	chr4:9965167:T:C	rs7663097	T	C	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr4	9965168	9965169	chr4:9965169:G:A	rs35110076	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr4	10096699	10096700	chr4:10096700:G:A	rs893939701	G	A	G	Sox3.mouse_HMG_2	15	1	-	3.151381199692327	6.931180617198123	TGTCCATTTTAGTGACA
chr4	10163736	10163737	chr4:10163737:G:A	rs4697943	G	A	a	Sox3.mouse_HMG_2	1	1	+	6.121971584055582	8.128359526075045	AGTCAATGTTGGTGATC
chr4	10174247	10174248	chr4:10174248:C:G	rs2903827	C	G	c	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr4	10491262	10491263	chr4:10491263:C:G	rs9291420	C	G	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr4	10722249	10722250	chr4:10722250:A:G	rs13137278	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr4	10965269	10965270	chr4:10965270:A:C	rs2869770	A	C	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr4	10998532	10998533	chr4:10998533:A:G	rs4697827	A	G	a	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr4	11083056	11083057	chr4:11083057:A:C	rs951881	A	C	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr4	11440786	11440787	chr4:11440787:T:C	rs434160	T	C	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr4	11471962	11471963	chr4:11471963:A:G	rs150033163	A	G	A	Sox3.mouse_HMG_2	10	1	+	3.7578637106898	-3.150891068625421	AAAGAATGCCAGTGATC
chr4	11506161	11506162	chr4:11506162:G:T	rs1390097	G	T	T	Sox3.mouse_HMG_2	9	1	-	3.1253698835558867	-2.165958833456473	GATCAGTGCCAATGAAT
chr4	11506166	11506167	chr4:11506167:T:A	rs1390098	T	A	T	Sox3.mouse_HMG_2	4	1	-	3.1253698835558867	-3.78270534423717	GATCAGTGCCAATGAAT
chr4	11515099	11515100	chr4:11515100:A:G	rs9997161	A	G	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr4	11593345	11593346	chr4:11593346:T:C	rs34061281	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.0002415678026093	-3.3890398665752817	GATCAATTTCCTGGATC
chr4	11743626	11743627	chr4:11743627:A:G	rs1873714	A	G	A	Sox3.mouse_HMG_2	11	1	-	6.993781160619912	0.30940696115957617	CACCAATGATATTGTTT
chr4	12884801	12884802	chr4:12884802:A:G	rs12642823	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr4	13459991	13459992	chr4:13459992:G:T	rs73231520	G	T	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr4	13590833	13590834	chr4:13590834:A:G	rs10939492	A	G	A	Sox3.mouse_HMG_2	5	1	+	5.843284391179008	-0.5459970431988825	TATCAATTCTACTGTTT
chr4	13750808	13750809	chr4:13750809:G:A	rs76805619	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr4	13897672	13897673	chr4:13897673:G:T	rs11726173	G	T	G	Sox3.mouse_HMG_2	13	1	+	4.924539612027764	-1.4627204268994476	TATCTATGATAGTGGTG
chr4	14000568	14000569	chr4:14000569:A:G	rs563591415	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr4	14000579	14000580	chr4:14000580:A:C	rs78741583	A	C	A	Sox3.mouse_HMG_2	6	1	-	3.43596145814531	-3.4721137696477484	CTTCAATGATGTTGAGC
chr4	14196398	14196399	chr4:14196399:T:C	rs12512931	T	C	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr4	14770427	14770428	chr4:14770428:T:C	rs73128642	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr4	14788664	14788665	chr4:14788665:G:T	rs113941086	G	T	G	Sox3.mouse_HMG_2	3	1	-	3.169063102793696	-3.7316071364652115	GATCAAGTCTACTGATA
chr4	14877571	14877572	chr4:14877572:C:T	rs6848585	C	T	C	Sox3.mouse_HMG_2	16	1	-	4.968149230812277	4.756574804327027	AAGCAATTACAGTGAAG
chr4	14877585	14877586	chr4:14877586:C:T	rs41328848	C	T	C	Sox3.mouse_HMG_2	2	1	-	4.968149230812277	6.84036712170863	AAGCAATTACAGTGAAG
chr4	15169952	15169953	chr4:15169953:A:G	rs10008514	A	G	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr4	15194237	15194238	chr4:15194238:T:A	rs73228859	T	A	T	Sox3.mouse_HMG_2	14	1	-	3.720736528450514	-0.2986449952981313	TTTTAATGTCATGGATA
chr4	15229350	15229351	chr4:15229351:C:T	rs4432744	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr4	15293973	15293974	chr4:15293974:G:T	rs9998611	G	T	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr4	15316296	15316297	chr4:15316297:A:G	rs75346824	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr4	15328161	15328162	chr4:15328162:T:C	rs4698359	T	C	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr4	15614275	15614276	chr4:15614276:T:G	rs4393989	T	G	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr4	15797583	15797584	chr4:15797584:C:T	rs6843266	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr4	15848706	15848707	chr4:15848707:T:G	rs1803404	T	G	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr4	15894717	15894718	chr4:15894718:C:T	rs727488	C	T	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr4	15917481	15917482	chr4:15917482:C:T	rs10034192	C	T	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr4	15933387	15933388	chr4:15933388:A:G	rs2531176	A	G	A	Sox3.mouse_HMG_2	4	1	+	7.257668275607026	0.8683868412291349	GACCAATGTCAGTGTTT
chr4	16005976	16005977	chr4:16005977:G:A	rs4466038	G	A	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr4	16016518	16016519	chr4:16016519:C:T	rs2531155	C	T	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr4	16084380	16084381	chr4:16084381:C:G	rs980608	C	G	C	Sox3.mouse_HMG_2	2	1	+	2.827646157016267	4.040668796862122	TACCAATGCTAGTGGCT
chr4	16158110	16158111	chr4:16158111:C:T	rs10034143	C	T	.	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr4	16224061	16224062	chr4:16224062:A:G	rs961450	A	G	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr4	16264607	16264608	chr4:16264608:T:G	rs77346097	T	G	t	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr4	16323367	16323368	chr4:16323368:A:G	rs4586928	A	G	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr4	16838978	16838979	chr4:16838979:C:T	rs62298185	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr4	17721698	17721699	chr4:17721699:G:A	rs116106413	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.335796620785288	-3.715841883401024	CATCCATGTTAGCGAGT
chr4	18150382	18150383	chr4:18150383:C:A	rs76002472	C	A	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr4	18749640	18749641	chr4:18749641:A:G	rs1568229	A	G	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr4	19227818	19227819	chr4:19227819:G:T	rs191018322	G	T	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr4	19373942	19373943	chr4:19373943:C:T	rs34517311	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr4	19615625	19615626	chr4:19615626:A:G	rs7682042	A	G	G	Sox3.mouse_HMG_2	6	1	-	3.1444241041735266	-3.244857330204363	TGACAGTGACAGTGATT
chr4	20258404	20258405	chr4:20258405:T:G	rs2322459	T	G	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr4	20258414	20258415	chr4:20258415:G:A	rs2874800	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr4	20528750	20528751	chr4:20528751:T:C	rs9992559	T	C	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr4	20529357	20529358	chr4:20529358:G:A	rs2168801	G	A	G	Sox3.mouse_HMG_2	8	1	+	8.444798546673942	7.226008161929444	TAACAATGGTATTTATT
chr4	20543457	20543458	chr4:20543458:T:A	rs649424	T	A	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr4	20543468	20543469	chr4:20543469:A:G	rs3775825	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.6659755495047044	-2.7233058848731853	ACTCAATTGTATTCAGA
chr4	20754383	20754384	chr4:20754384:G:A	rs2291530	G	A	G	Sox3.mouse_HMG_2	13	1	+	7.105739535773581	1.0541010315872685	CATCAATGTTACTGTTC
chr4	21544593	21544594	chr4:21544594:C:T	rs870368	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr4	21845923	21845924	chr4:21845924:C:T	rs1398832	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.8679099223525766	-3.1837285818337353	TATGACTGTTATTGAGG
chr4	22090815	22090816	chr4:22090816:G:A	rs34780697	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr4	22427969	22427970	chr4:22427970:T:C	rs1841825	T	C	T	Sox3.mouse_HMG_2	3	1	+	4.218649842219627	9.07550571744185	CATTAATGGCAATGAAA
chr4	22609474	22609475	chr4:22609475:T:C	rs6838110	T	C	c	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr4	22655705	22655706	chr4:22655706:G:A	rs77401428	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr4	22815039	22815040	chr4:22815040:A:G	rs1485822	A	G	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr4	23243173	23243174	chr4:23243174:T:G	chr4:23243174:T:G	T	G	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr4	23654782	23654783	chr4:23654783:T:A	chr4:23654783:T:A	T	A	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr4	23805437	23805438	chr4:23805438:T:G	rs28750249	T	G	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr4	23819700	23819701	chr4:23819701:T:C	rs60276093	T	C	T	Sox3.mouse_HMG_2	5	1	-	8.02632593969119	1.6370445053133016	TTTCAATTTCATTCATT
chr4	24068200	24068201	chr4:24068201:A:T	rs56046693	A	T	A	Sox3.mouse_HMG_2	11	1	-	1.9136176115425974	-4.038388694204512	CTTCCGTGGCATTGATT
chr4	24261203	24261204	chr4:24261204:G:C	rs1969191	G	C	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr4	24274572	24274573	chr4:24274573:C:G	rs116869778	C	G	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr4	24328953	24328954	chr4:24328954:G:A	rs61793465	G	A	g	Sox3.mouse_HMG_2	10	1	+	2.829161504282485	9.737916283597706	CTTCAATTCCGTTGAAC
chr4	24454038	24454039	chr4:24454039:G:A	rs13105131	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr4	24552546	24552547	chr4:24552547:G:A	rs58666069	G	A	G	Sox3.mouse_HMG_2	15	1	+	3.9992067323777043	4.432944183639045	ACTCAATTTCATGGAGG
chr4	24597454	24597455	chr4:24597455:G:A	rs1857898	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr4	24645640	24645641	chr4:24645641:C:T	rs78106878	C	T	t	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr4	24669865	24669866	chr4:24669866:T:A	rs28538387	T	A	A	Sox3.mouse_HMG_2	15	1	+	2.853835740105019	0.5504460466463346	GATCAATGCCTGTAATA
chr4	24669881	24669882	chr4:24669882:T:G	rs13148470	T	G	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr4	24742820	24742821	chr4:24742821:T:C	rs16875994	T	C	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr4	24958124	24958125	chr4:24958125:T:A	rs7697533	T	A	T	Sox3.mouse_HMG_2	6	1	+	4.429864112542007	-2.4782111152510504	ACTCAATGGCATAGGTT
chr4	25356229	25356230	chr4:25356230:G:A	rs59984145	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.26122383397393	-3.7904146702123818	CATCATTGTGAGTGAAA
chr4	25639139	25639140	chr4:25639140:G:T	rs78738959	G	T	G	Sox3.mouse_HMG_2	11	1	-	4.455682367356469	5.188050261069695	GATCAATTCTACTGGAA
chr4	25825379	25825380	chr4:25825380:C:T	rs540097809	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr4	25991750	25991751	chr4:25991751:C:A	rs6828245	C	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr4	26076110	26076111	chr4:26076111:C:A	rs77336503	C	A	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr4	26206633	26206634	chr4:26206634:G:A	rs528700663	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr4	26500393	26500394	chr4:26500394:C:T	rs10026781	C	T	C	Sox3.mouse_HMG_2	6	1	+	2.9042118352612114	9.293493269639104	CATCAACGCTGGTGATA
chr4	26576374	26576375	chr4:26576375:G:T	rs76971433	G	T	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr4	26821375	26821376	chr4:26821376:A:G	rs6856464	A	G	C	Sox3.mouse_HMG_2	12	1	-	4.8936040650430925	-1.1573630728877247	AAACAATGTTAATGGTA
chr4	26887029	26887030	chr4:26887030:G:A	rs80197589	G	A	G	Sox3.mouse_HMG_2	6	1	+	4.699332908086435	4.699332908086435	AATCAAGTTCATTGTTA
chr4	27094521	27094522	chr4:27094522:C:T	rs56043656	C	T	C	Sox3.mouse_HMG_2	8	1	-	1.7668947005829343	0.548104315838437	GACCAATGGTATGGTTG
chr4	27190408	27190409	chr4:27190409:C:T	rs146227205	C	T	C	Sox3.mouse_HMG_2	0	1	+	2.800746863722285	2.3156118494681763	CGTCAATGGCACAGATG
chr4	27289934	27289935	chr4:27289935:T:G	rs1032240	T	G	T	Sox3.mouse_HMG_2	15	1	+	2.2250232491961386	-0.5121038955238871	CCTCAAAGGTATGGATG
chr4	27448578	27448579	chr4:27448579:A:C	rs210781	A	C	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr4	27974903	27974904	chr4:27974904:C:A	rs12511556	C	A	-	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr4	29081848	29081849	chr4:29081849:T:C	rs4692380	T	C	T	Sox3.mouse_HMG_2	2	1	+	4.415948754819219	-1.950948551706526	AATGAATTTCAGTGACA
chr4	29309428	29309429	chr4:29309429:C:T	rs1836781	C	T	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr4	30463158	30463159	chr4:30463159:C:T	rs73216835	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr4	30716710	30716711	chr4:30716711:A:G	rs9291546	A	G	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr4	30803346	30803347	chr4:30803347:A:C	rs9654124	A	C	C	Sox3.mouse_HMG_2	4	1	+	8.499337277138773	1.5912620493457152	CATCAAAGTCATTGAGA
chr4	30954726	30954727	chr4:30954727:A:T	rs4499665	A	T	A	Sox3.mouse_HMG_2	0	1	-	9.50526169460327	8.598537932678903	TTTTAATGGCATTGATG
chr4	31588808	31588809	chr4:31588809:G:A	rs7656200	G	A	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr4	31963879	31963880	chr4:31963880:C:T	rs1916298	C	T	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr4	32508281	32508282	chr4:32508282:A:G	rs1584155	A	G	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr4	34858253	34858254	chr4:34858254:T:C	rs73228073	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr4	35105066	35105067	chr4:35105067:T:C	rs6831661	T	C	c	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr4	35141408	35141409	chr4:35141409:T:C	rs12646278	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr4	35168345	35168346	chr4:35168346:A:C	rs13133684	A	C	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr4	35168370	35168371	chr4:35168371:A:G	rs114362182	A	G	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr4	35556624	35556625	chr4:35556625:A:G	rs6856131	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr4	35559662	35559663	chr4:35559663:C:T	rs11942552	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr4	36026873	36026874	chr4:36026874:G:C	rs6856512	G	C	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr4	37040988	37040989	chr4:37040989:G:A	rs13127946	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr4	37445251	37445252	chr4:37445252:C:T	rs76049455	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr4	37581653	37581654	chr4:37581654:C:T	rs6846773	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr4	37629900	37629901	chr4:37629901:C:T	rs75672681	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr4	37852630	37852631	chr4:37852631:G:A	rs73808089	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr4	38024919	38024920	chr4:38024920:A:G	rs76728094	A	G	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr4	38156725	38156726	chr4:38156726:C:T	rs12503618	C	T	T	Sox3.mouse_HMG_2	13	1	-	3.3639920274655783	-2.6876464767207335	GTTCATTTGCAGTGAGT
chr4	38165431	38165432	chr4:38165432:A:G	rs13139753	A	G	A	Sox3.mouse_HMG_2	14	1	+	3.9027704730584207	0.584704203286819	GAACAATGGCTGTGAGT
chr4	38278645	38278646	chr4:38278646:G:A	rs4833028	G	A	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr4	38490213	38490214	chr4:38490214:C:T	rs4073968	C	T	C	Sox3.mouse_HMG_2	8	1	+	2.3696228397322794	3.6240448058879475	TGTAAATGCTATTGCTG
chr4	38601767	38601768	chr4:38601768:G:A	rs337636	G	A	A	Sox3.mouse_HMG_2	3	1	-	2.9662710342066014	-1.8905848410156194	GAACGATGTCATTCATT
chr4	38605311	38605312	chr4:38605312:C:T	rs74669155	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr4	38715099	38715100	chr4:38715100:G:A	rs6845639	G	A	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr4	38734102	38734103	chr4:38734103:A:G	rs111204003	A	G	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr4	38762071	38762072	chr4:38762072:G:A	rs10023850	G	A	A	Sox3.mouse_HMG_2	8	1	+	3.221018852074911	2.0022284673304145	AATCTATTGTAATGATT
chr4	39030358	39030359	chr4:39030359:C:T	rs6821102	C	T	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr4	39178796	39178797	chr4:39178797:T:G	rs1451821	T	G	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr4	40187704	40187705	chr4:40187705:T:C	rs12501987	T	C	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr4	40237775	40237776	chr4:40237776:C:T	rs10019892	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr4	40245733	40245734	chr4:40245734:T:C	rs16995665	T	C	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr4	40290524	40290525	chr4:40290525:T:C	rs35619832	T	C	T	Sox3.mouse_HMG_2	8	1	+	1.4996945877769683	0.2452726216212981	CCTCAAAGTTGGTGATT
chr4	40331503	40331504	chr4:40331504:T:G	rs7673930	T	G	t	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr4	40492025	40492026	chr4:40492026:C:T	rs278984	C	T	T	Sox3.mouse_HMG_2	0	1	+	3.7960057580969417	3.310870743842833	CACGAATTTCAGTGATT
chr4	40492049	40492050	chr4:40492050:C:G	rs113834136	C	G	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr4	40608616	40608617	chr4:40608617:A:T	rs6847630	A	T	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr4	40924026	40924027	chr4:40924027:C:T	rs756116586	C	T	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr4	40962470	40962471	chr4:40962471:T:C	rs62410355	T	C	T	Sox3.mouse_HMG_2	2	1	+	3.6290183400085807	-2.737878966517163	TATCGATGCTATTAATC
chr4	41324766	41324767	chr4:41324767:G:T	rs1840101	G	T	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr4	41408912	41408913	chr4:41408913:C:G	rs4861104	C	G	G	Sox3.mouse_HMG_2	12	1	+	2.3362938844046024	2.000672349663703	CATAAATTCTAGCGATG
chr4	41468723	41468724	chr4:41468724:G:A	rs11944274	G	A	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr4	41579271	41579272	chr4:41579272:C:T	rs10021226	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr4	42341794	42341795	chr4:42341795:G:A	rs56209012	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr4	42401543	42401544	chr4:42401544:T:C	rs55934419	T	C	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr4	42401560	42401561	chr4:42401561:A:T	rs76362324	A	T	A	Sox3.mouse_HMG_2	10	1	+	3.1477503418916637	-3.7610044374235567	GATCAGTGTCATGGAGG
chr4	42447003	42447004	chr4:42447004:A:G	rs4861195	A	G	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr4	42568871	42568872	chr4:42568872:G:T	rs369286983	G	T	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr4	42568916	42568917	chr4:42568917:C:T	rs2061526	C	T	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr4	42704110	42704111	chr4:42704111:T:C	rs2612468	T	C	T	Sox3.mouse_HMG_2	5	1	-	6.452766391396974	0.0634849570190858	CATCAATGTTGTAGATT
chr4	42949927	42949928	chr4:42949928:T:G	rs78251530	T	G	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr4	43360846	43360847	chr4:43360847:C:G	rs16855926	C	G	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr4	45151292	45151293	chr4:45151293:C:T	rs10222856	C	T	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr4	45662931	45662932	chr4:45662932:G:A	rs2124681	G	A	A	Sox3.mouse_HMG_2	16	1	+	6.190141600555641	5.978567174070391	CATTAATTCTATTGGAG
chr4	46344639	46344640	chr4:46344640:A:G	rs10004122	A	G	A	Sox3.mouse_HMG_2	8	1	+	3.363799570852408	4.582589955596904	GATCAATGACAGAGGAA
chr4	46344661	46344662	chr4:46344662:A:G	rs189957	A	G	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr4	46486082	46486083	chr4:46486083:A:G	rs4695160	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr4	47427388	47427389	chr4:47427389:A:C	rs76065978	A	C	A	Sox3.mouse_HMG_2	16	1	-	10.457644121452816	10.093922431818871	GAGCAATGACAGTGATT
chr4	47428109	47428110	chr4:47428110:T:A	rs75108488	T	A	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr4	48042985	48042986	chr4:48042986:A:G	rs5005127	A	G	A	Sox3.mouse_HMG_2	11	1	-	5.710956079229671	-0.9734181202306635	CCTGAATTGCATTGAAT
chr4	48074230	48074231	chr4:48074231:A:G	rs2279965	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr4	48174205	48174206	chr4:48174206:G:T	rs2089510	G	T	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr4	48262064	48262065	chr4:48262065:A:T	rs114491684	A	T	A	Sox3.mouse_HMG_2	14	1	-	3.3449258596538023	7.364307383402448	TCTCAAGTGTATTGTTT
chr4	48340418	48340419	chr4:48340419:G:C	rs112028616	G	C	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr4	48493644	48493645	chr4:48493645:T:A	rs17472113	T	A	T	Sox3.mouse_HMG_2	14	1	-	8.863129509505226	4.843747985756581	GGTCAAGTGTATTGATT
chr4	48608943	48608944	chr4:48608944:T:C	rs776604	T	C	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr4	49112334	49112335	chr4:49112335:T:A	chr4:49112335:T:A	T	A	.	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr4	49510956	49510957	chr4:49510957:A:G	rs6599465	A	G	.	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr4	49654166	49654167	chr4:49654167:G:A	rs61796181	G	A	.	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr4	52315191	52315192	chr4:52315192:A:G	rs17612939	A	G	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr4	52483416	52483417	chr4:52483417:T:C	rs10023109	T	C	C	Sox3.mouse_HMG_2	8	1	+	6.461452931610106	5.207030965454436	TAACAATTTCAGTGGAG
chr4	52483424	52483425	chr4:52483425:G:C	rs145630090	G	C	G	Sox3.mouse_HMG_2	16	1	+	6.461452931610106	5.222181571583601	TAACAATTTCAGTGGAG
chr4	53059403	53059404	chr4:53059404:C:T	rs7664855	C	T	C	Sox3.mouse_HMG_2	1	1	+	2.298394057051615	2.3186120343422596	GCTCCATGTTAGAGATG
chr4	53161850	53161851	chr4:53161851:G:C	chr4:53161851:G:C	G	C	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr4	53465538	53465539	chr4:53465539:A:G	rs13435672	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr4	53557658	53557659	chr4:53557659:A:G	rs4864794	A	G	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr4	53682517	53682518	chr4:53682518:A:G	rs2668548	A	G	A	Sox3.mouse_HMG_2	4	1	+	3.2800411676072145	-3.1092402667706756	ATTCAATTTCTTTGGTT
chr4	53863044	53863045	chr4:53863045:C:T	rs1466833	C	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr4	54278945	54278946	chr4:54278946:A:G	rs76850938	A	G	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr4	54544971	54544972	chr4:54544972:T:C	rs218269	T	C	C	Sox3.mouse_HMG_2	6	1	+	3.3766871031338344	-3.0125943312440553	TTTCTATGCTAGTGAGA
chr4	54589947	54589948	chr4:54589948:G:A	rs936486551	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr4	54864386	54864387	chr4:54864387:T:G	rs1021604	T	G	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr4	54899017	54899018	chr4:54899018:C:G	rs150707262	C	G	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr4	54950832	54950833	chr4:54950833:T:C	rs77033262	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr4	55185126	55185127	chr4:55185127:C:T	rs144555188	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr4	55336704	55336705	chr4:55336705:C:T	rs34929896	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr4	55336748	55336749	chr4:55336749:G:C	rs28433408	G	C	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr4	55768755	55768756	chr4:55768756:G:A	rs73238325	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr4	55768761	55768762	chr4:55768762:C:T	rs73238326	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr4	55850659	55850660	chr4:55850660:T:C	rs2012267	T	C	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr4	56089389	56089390	chr4:56089390:T:C	rs12331742	T	C	T	Sox3.mouse_HMG_2	8	1	+	3.4093359573161837	2.1549139911605137	TATCACTTTTCTTGATA
chr4	56106791	56106792	chr4:56106792:T:C	rs114908193	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr4	56259840	56259841	chr4:56259841:A:G	rs61000253	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.461251286674039	-3.928030147703849	GTACAATGGAAGTGAGG
chr4	56302231	56302232	chr4:56302232:G:A	rs28436241	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr4	56691207	56691208	chr4:56691208:C:A	rs13141489	C	A	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr4	57044118	57044119	chr4:57044119:A:G	rs11573106	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr4	57044152	57044153	chr4:57044153:G:C	rs11573105	G	C	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr4	57285775	57285776	chr4:57285776:A:G	rs57826843	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr4	57472617	57472618	chr4:57472618:T:C	rs11133496	T	C	C	Sox3.mouse_HMG_2	6	1	+	3.411974851422456	-2.9773065829554337	GCTGAATTTCAGTGAGC
chr4	57607958	57607959	chr4:57607959:T:C	rs112522775	T	C	T	Sox3.mouse_HMG_2	1	1	-	4.941708749135998	2.9353208071165398	CATTAATGCTATTGTGC
chr4	58119379	58119380	chr4:58119380:T:C	rs72642173	T	C	T	Sox3.mouse_HMG_2	16	1	-	3.6998832020324537	3.911457628517704	ACTCATTTTCATTGAAA
chr4	58286017	58286018	chr4:58286018:T:C	rs28373573	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr4	58809701	58809702	chr4:58809702:C:T	rs77352715	C	T	c	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr4	59938462	59938463	chr4:59938463:A:T	rs72637562	A	T	T	Sox3.mouse_HMG_2	4	1	+	2.871443973588649	-4.036631254204408	TAACACTTTCAGTGAAG
chr4	60225358	60225359	chr4:60225359:G:C	rs76655661	G	C	G	Sox3.mouse_HMG_2	5	1	+	2.7539454508631684	2.2351516574479997	TTTCAGTGTCATTGCTG
chr4	60225373	60225374	chr4:60225374:G:A	rs7675725	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr4	60682894	60682895	chr4:60682895:A:G	rs7687640	A	G	A	Sox3.mouse_HMG_2	8	1	-	7.00044683679322	5.746024870637551	TCTCATTGTTATTGAAT
chr4	61210713	61210714	chr4:61210714:T:G	rs145528237	T	G	T	Sox3.mouse_HMG_2	11	1	+	2.934093521642497	1.553571344228673	TTTCAGTGTTCTTGATT
chr4	61210724	61210725	chr4:61210725:A:G	rs6854914	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr4	61332704	61332705	chr4:61332705:T:C	rs1505678	T	C	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr4	61741897	61741898	chr4:61741898:A:G	rs77359511	A	G	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr4	61741915	61741916	chr4:61741916:A:C	rs78169384	A	C	C	Sox3.mouse_HMG_2	2	1	-	3.085499958066066	-2.068374708613822	TATAAATGATTTTGATT
chr4	61741918	61741919	chr4:61741919:T:C	rs76626325	T	C	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr4	62260373	62260374	chr4:62260374:T:A	rs73823366	T	A	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr4	62706303	62706304	chr4:62706304:T:G	rs72630526	T	G	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr4	62717460	62717461	chr4:62717461:C:A	rs114212955	C	A	C	Sox3.mouse_HMG_2	0	1	+	3.800649132119546	2.4087903559410706	CATCAATTCTGTTGTAT
chr4	62940429	62940430	chr4:62940430:C:A	rs6851798	C	A	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr4	62940469	62940470	chr4:62940470:G:C	rs6850291	G	C	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr4	63659743	63659744	chr4:63659744:A:G	rs17683007	A	G	A	Sox3.mouse_HMG_2	2	1	-	5.8377724972465375	-0.5291248092792087	TTTCAGTGTCATTGAGA
chr4	63670865	63670866	chr4:63670866:G:A	rs11131470	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr4	63873692	63873693	chr4:63873693:T:C	rs984927947	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr4	63906928	63906929	chr4:63906929:T:C	rs1349182	T	C	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr4	64017725	64017726	chr4:64017726:C:T	rs6823750	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr4	64737272	64737273	chr4:64737273:T:C	rs13140465	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr4	65378577	65378578	chr4:65378578:T:G	rs2034538	T	G	G	Sox3.mouse_HMG_2	0	1	+	5.627829666357342	6.4175981981356385	TTACAATTTTATTGGAA
chr4	65566190	65566191	chr4:65566191:T:C	rs11931601	T	C	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr4	65651345	65651346	chr4:65651346:G:A	rs79064065	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr4	65652683	65652684	chr4:65652684:A:G	rs72642684	A	G	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr4	65853329	65853330	chr4:65853330:C:T	rs17756441	C	T	C	Sox3.mouse_HMG_2	3	1	+	4.427954928191941	-0.4289009470302822	AAACAATGATAGTGTAA
chr4	66001108	66001109	chr4:66001109:A:T	rs6823796	A	T	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr4	66408728	66408729	chr4:66408729:T:C	rs1511293	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr4	66597773	66597774	chr4:66597774:T:C	rs4032301	T	C	c	Sox3.mouse_HMG_2	9	1	+	4.1050874565755	3.4124349137035406	CACCATTGATATTGATT
chr4	66750793	66750794	chr4:66750794:C:T	rs10452261	C	T	C	Sox3.mouse_HMG_2	16	1	-	1.8606684958788466	1.6490940693935958	TATCCAAGGCAGTGATG
chr4	67091858	67091859	chr4:67091859:C:A	rs6552063	C	A	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr4	67477938	67477939	chr4:67477939:G:A	rs11725269	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr4	67961859	67961860	chr4:67961860:G:A	rs4260588	G	A	G	Sox3.mouse_HMG_2	3	1	-	10.141284801711016	5.284428926488796	GGTCAATGCCATTGTTC
chr4	67991248	67991249	chr4:67991249:T:C	rs2028249	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr4	67996243	67996244	chr4:67996244:C:T	rs1438407	C	T	c	Sox3.mouse_HMG_2	3	1	+	6.083585211927667	1.2267293367054453	CCACAATGTTATTGTGA
chr4	68404750	68404751	chr4:68404751:C:A	rs141729907	C	A	c	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr4	68505583	68505584	chr4:68505584:A:T	rs28820893	A	T	a	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr4	68522727	68522728	chr4:68522728:A:C	rs34138969	A	C	a	Sox3.mouse_HMG_2	3	1	+	6.059170455445894	12.9598406947048	TAGAAATGGTATTGATT
chr4	68748163	68748164	chr4:68748164:C:T	rs428529	C	T	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr4	68927506	68927507	chr4:68927507:T:C	rs10903221	T	C	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr4	69470865	69470866	chr4:69470866:G:A	rs2736519	G	A	g	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr4	69533218	69533219	chr4:69533219:T:C	rs4631116	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr4	69726919	69726920	chr4:69726920:A:C	rs4149417	A	C	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr4	69728357	69728358	chr4:69728358:A:T	rs13115602	A	T	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr4	69735473	69735474	chr4:69735474:A:C	rs1847365	A	C	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr4	69874862	69874863	chr4:69874863:G:A	rs13112570	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr4	69936499	69936500	chr4:69936500:T:C	rs962689	T	C	T	Sox3.mouse_HMG_2	4	1	-	7.14919404972555	0.7599126153476622	TTTAAATTTCATTGATG
chr4	70089245	70089246	chr4:70089246:C:T	rs111865481	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr4	70241646	70241647	chr4:70241647:T:A	rs17148376	T	A	A	Sox3.mouse_HMG_2	2	1	+	8.083543623267552	4.801886847484015	TCTCAATGTCAGTGGGT
chr4	70249335	70249336	chr4:70249336:T:A	rs3775740	T	A	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr4	70249342	70249343	chr4:70249343:G:A	rs3775739	G	A	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr4	70300578	70300579	chr4:70300579:G:T	rs17148544	G	T	G	Sox3.mouse_HMG_2	3	1	-	3.6844957450527436	-3.2161744942061588	CTGCAGTTTTATTGATG
chr4	70541436	70541437	chr4:70541437:T:C	rs28408923	T	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr4	70838310	70838311	chr4:70838311:C:T	rs4694345	C	T	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr4	70838315	70838316	chr4:70838316:T:C	rs11729825	T	C	T	Sox3.mouse_HMG_2	2	1	+	5.266044886219177	-1.1008524203065675	AGTCAATTTCATAGAAA
chr4	70944976	70944977	chr4:70944977:G:A	rs75473930	G	A	G	Sox3.mouse_HMG_2	3	1	+	4.844748593615719	3.9945976642461094	TATGAATTGCAGTGTTT
chr4	71029223	71029224	chr4:71029224:A:G	rs77592672	A	G	a	Sox3.mouse_HMG_2	11	1	-	3.1323971764405747	-3.5519770230197607	CCACAATGCCATTGCAT
chr4	71108501	71108502	chr4:71108502:T:G	rs11734575	T	G	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr4	72287116	72287117	chr4:72287117:T:C	rs72653979	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr4	72326831	72326832	chr4:72326832:A:G	rs74881571	A	G	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr4	72326843	72326844	chr4:72326844:T:C	rs77597747	T	C	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr4	72326874	72326875	chr4:72326875:A:C	rs151111594	A	C	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr4	72567177	72567178	chr4:72567178:C:T	rs1401153	C	T	C	Sox3.mouse_HMG_2	16	1	-	2.4613195072026013	2.249745080717351	GCTAAATTATAGTGAGG
chr4	72809439	72809440	chr4:72809440:A:G	rs1114360	A	G	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr4	72992135	72992136	chr4:72992136:A:G	rs13135890	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr4	73421685	73421686	chr4:73421686:T:C	rs4429703	T	C	-	Sox3.mouse_HMG_2	5	1	-	2.11979799701592	-4.26948343736197	GTTCTATTCCATTGGTC
chr4	73609791	73609792	chr4:73609792:C:T	rs62312138	C	T	C	Sox3.mouse_HMG_2	9	1	+	5.220484334025839	5.9131368768977985	GGTCAGTGGCATTGTTA
chr4	73662060	73662061	chr4:73662061:T:G	rs1247684	T	G	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr4	74319043	74319044	chr4:74319044:A:G	rs16850918	A	G	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr4	74358872	74358873	chr4:74358873:T:C	rs1350666	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr4	74362753	74362754	chr4:74362754:T:C	rs3822102	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr4	74411325	74411326	chr4:74411326:G:A	rs28756033	G	A	G	Sox3.mouse_HMG_2	13	1	+	4.066298099696105	-1.9853404044902054	GGAAAATGGCAGTGATA
chr4	74415796	74415797	chr4:74415797:T:C	rs7442533	T	C	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr4	74415797	74415798	chr4:74415798:C:T	chr4:74415798:C:T	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr4	74423637	74423638	chr4:74423638:T:C	rs932550907	T	C	c	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr4	74423647	74423648	chr4:74423648:A:G	rs9996239	A	G	a	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr4	74440524	74440525	chr4:74440525:C:T	rs989224525	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr4	74502238	74502239	chr4:74502239:A:G	rs1797581	A	G	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr4	74504521	74504522	chr4:74504522:A:G	rs3113928	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr4	74504558	74504559	chr4:74504559:A:T	rs3113929	A	T	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr4	74757157	74757158	chr4:74757158:C:T	rs9307117	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr4	75024385	75024386	chr4:75024386:T:C	rs72660383	T	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr4	75468888	75468889	chr4:75468889:G:C	rs6825648	G	C	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr4	75511372	75511373	chr4:75511373:G:A	rs12648354	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr4	75715379	75715380	chr4:75715380:G:C	rs115857742	G	C	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr4	76016487	76016488	chr4:76016488:C:A	rs75941444	C	A	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr4	76051499	76051500	chr4:76051500:A:G	rs28433437	A	G	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr4	76188725	76188726	chr4:76188726:A:C	rs17001603	A	C	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr4	76278057	76278058	chr4:76278058:A:C	rs3817118	A	C	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr4	76386896	76386897	chr4:76386897:G:C	rs11097343	G	C	C	Sox3.mouse_HMG_2	0	1	+	2.6825334027916035	2.3778998852674147	GGTCCATTTCAGTGGTC
chr4	76447039	76447040	chr4:76447040:C:T	rs17001966	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr4	76535651	76535652	chr4:76535652:G:A	rs4563521	G	A	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr4	76655821	76655822	chr4:76655822:C:T	rs11727631	C	T	T	Sox3.mouse_HMG_2	7	1	-	5.133759366841847	-1.4950621282462107	GATAAATGCCAGTGACA
chr4	76991709	76991710	chr4:76991710:G:A	rs904029	G	A	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr4	76991731	76991732	chr4:76991732:T:C	rs904030	T	C	T	Sox3.mouse_HMG_2	15	1	+	2.06587847900949	-1.7139209384963057	ACGCCATGGTATTGATG
chr4	77252185	77252186	chr4:77252186:G:T	chr4:77252186:G:T	G	T	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr4	77394292	77394293	chr4:77394293:C:T	rs6843922	C	T	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr4	77414630	77414631	chr4:77414631:G:A	rs35481793	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr4	77877493	77877494	chr4:77877494:T:C	rs4859511	T	C	C	Sox3.mouse_HMG_2	1	1	+	6.592313958033777	6.572095980743131	TTTCAGTGGCAGTGATG
chr4	78098676	78098677	chr4:78098677:T:C	rs13106755	T	C	t	Sox3.mouse_HMG_2	1	1	-	3.5947824167759177	1.5883944747564591	CATCAAAGCCATTTATA
chr4	78230559	78230560	chr4:78230560:C:T	rs1470989	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr4	78362440	78362441	chr4:78362441:A:G	rs345546	A	G	G	Sox3.mouse_HMG_2	5	1	+	2.336244448826806	-4.053036985551082	CATGTATGTTAGTGAGT
chr4	78479713	78479714	chr4:78479714:C:T	rs11098194	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr4	78509313	78509314	chr4:78509314:G:A	rs35520641	G	A	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr4	78509340	78509341	chr4:78509341:G:A	rs35150477	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr4	78585760	78585761	chr4:78585761:A:G	rs78728705	A	G	A	Sox3.mouse_HMG_2	0	1	-	2.338861630804867	2.8239966450589757	TATCAAGGTCACTGAAT
chr4	78615958	78615959	chr4:78615959:T:C	rs73828058	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.08042806127168	-2.30885337310621	TAACAATGCTAGTAAAA
chr4	78706328	78706329	chr4:78706329:A:T	rs7677162	A	T	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr4	78786192	78786193	chr4:78786193:G:A	rs6838118	G	A	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr4	79296907	79296908	chr4:79296908:T:C	rs17494639	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr4	79445374	79445375	chr4:79445375:C:T	rs58146485	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr4	79497476	79497477	chr4:79497477:G:A	rs1971838	G	A	G	Sox3.mouse_HMG_2	3	1	-	4.066955208144355	-0.789900667077867	TATCATTGTCACTGATA
chr4	79585990	79585991	chr4:79585991:C:A	rs116186422	C	A	C	Sox3.mouse_HMG_2	7	1	-	3.409791554241948	2.2839003403967006	TCTCAATGATATGGTTG
chr4	79622403	79622404	chr4:79622404:C:A	rs13133572	C	A	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr4	79851765	79851766	chr4:79851766:G:A	rs10021224	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr4	80198794	80198795	chr4:80198795:C:T	rs79975826	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr4	81397869	81397870	chr4:81397870:A:C	rs7687154	A	C	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr4	81508635	81508636	chr4:81508636:T:C	rs1043554919	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr4	81512194	81512195	chr4:81512195:A:T	rs895087	A	T	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr4	81666896	81666897	chr4:81666897:T:C	rs28594977	T	C	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr4	81682261	81682262	chr4:81682262:C:G	rs6814148	C	G	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr4	81844429	81844430	chr4:81844430:A:G	rs10011555	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.9361437809369377	-2.453137653440951	AATGTATTTTATTGATT
chr4	82184473	82184474	chr4:82184474:C:A	rs62319682	C	A	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr4	82198027	82198028	chr4:82198028:G:T	rs9683882	G	T	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr4	82230489	82230490	chr4:82230490:T:C	chr4:82230490:T:C	T	C	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr4	82793636	82793637	chr4:82793637:T:C	rs75245386	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.379847911889966	-2.0094335224879223	TAATAATGACAGTGAAT
chr4	82892864	82892865	chr4:82892865:G:A	rs1020748	G	A	A	Sox3.mouse_HMG_2	8	1	+	3.2380389947893145	2.019248610044817	GGTCACTGGTATTTATG
chr4	83561506	83561507	chr4:83561507:A:G	rs62305329	A	G	A	Sox3.mouse_HMG_2	4	1	+	3.935997406714434	-2.4532840276634555	CCTCATTGTCAGTGACT
chr4	83561513	83561514	chr4:83561514:G:A	rs144914748	G	A	G	Sox3.mouse_HMG_2	11	1	+	3.935997406714434	-0.6354867216188511	CCTCATTGTCAGTGACT
chr4	83759772	83759773	chr4:83759773:T:C	rs1379981	T	C	C	Sox3.mouse_HMG_2	4	1	-	6.627534513989061	0.23825307961117076	TATTAATGTCATGGATG
chr4	83909085	83909086	chr4:83909086:C:G	rs11732396	C	G	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr4	84145241	84145242	chr4:84145242:T:G	rs9992120	T	G	G	Sox3.mouse_HMG_2	9	1	-	7.253211078587898	12.54453979560026	TGTCAATTGAAGTGATG
chr4	84686611	84686612	chr4:84686612:T:C	rs62303075	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.4356237123239706	-2.9536577220539173	TAGCCATGTCATTGAGT
chr4	84937175	84937176	chr4:84937176:T:C	rs6848127	T	C	C	Sox3.mouse_HMG_2	5	1	-	7.103957815935444	0.714676381557554	CTTGAATTTCAGTGATG
chr4	84948629	84948630	chr4:84948630:T:A	rs11097028	T	A	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr4	85114307	85114308	chr4:85114308:G:A	rs17009461	G	A	A	Sox3.mouse_HMG_2	9	1	-	3.1066583858300567	3.7993109287020164	GGTCAACTTCATTGCTG
chr4	85228593	85228594	chr4:85228594:C:T	rs6531803	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr4	85422822	85422823	chr4:85422823:G:C	rs17010223	G	C	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr4	85437399	85437400	chr4:85437400:C:G	chr4:85437400:C:G	C	G	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr4	85523433	85523434	chr4:85523434:A:C	rs6834664	A	C	A	Sox3.mouse_HMG_2	10	1	+	4.408759568416158	-2.4999952108990624	GATCAATTTTAGATATG
chr4	85794250	85794251	chr4:85794251:T:A	rs12503243	T	A	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr4	85933510	85933511	chr4:85933511:A:G	rs346501	A	G	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr4	85994694	85994695	chr4:85994695:T:C	rs10003909	T	C	C	Sox3.mouse_HMG_2	10	1	-	3.9597454780558707	-2.9490093012593506	TCTGAATTTCATTGTTG
chr4	86044267	86044268	chr4:86044268:A:C	rs114925718	A	C	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr4	86453422	86453423	chr4:86453423:G:A	rs72663991	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.229458882898144	-3.822179621288168	GCACAATGGGAGTGAGA
chr4	87207952	87207953	chr4:87207953:C:T	rs12649293	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr4	87353883	87353884	chr4:87353884:T:C	rs143344687	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr4	87353908	87353909	chr4:87353909:T:G	rs1005193654	T	G	T	Sox3.mouse_HMG_2	9	1	+	4.669323526606018	-1.3146577332783012	TTTCAGTTTTAGTGAAG
chr4	88136315	88136316	chr4:88136316:A:C	rs150157050	A	C	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr4	88172911	88172912	chr4:88172912:T:C	rs2622629	T	C	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr4	88336265	88336266	chr4:88336266:A:G	rs34947320	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr4	88340851	88340852	chr4:88340852:G:A	rs144091995	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr4	88809829	88809830	chr4:88809830:C:T	rs544693122	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr4	88809834	88809835	chr4:88809835:C:G	rs17014602	C	G	C	Sox3.mouse_HMG_2	13	1	-	4.466519080798165	-1.9207409581290467	TTTTAATGTTCTTGATT
chr4	88812730	88812731	chr4:88812731:A:G	rs6814344	A	G	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr4	88818652	88818653	chr4:88818653:T:G	rs3775381	T	G	T	Sox3.mouse_HMG_2	4	1	-	6.63368008547084	-0.27439514232221746	TATCACTGTCAGTGAGA
chr4	89056382	89056383	chr4:89056383:C:T	rs17014988	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr4	89113534	89113535	chr4:89113535:A:G	rs17015027	A	G	A	Sox3.mouse_HMG_2	15	1	-	3.1922567034017315	-0.5875427141040642	AGTTAATGTCCTTGATG
chr4	89382704	89382705	chr4:89382705:A:G	rs7677756	A	G	a	Sox3.mouse_HMG_2	2	1	-	5.161048622607527	-1.2058486839182176	AATAAATTGTATTGTTT
chr4	89788442	89788443	chr4:89788443:C:T	rs115322031	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr4	90118631	90118632	chr4:90118632:C:T	rs7679917	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr4	90460006	90460007	chr4:90460007:C:A	rs62312946	C	A	c	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr4	90547402	90547403	chr4:90547403:C:G	rs10027240	C	G	C	Sox3.mouse_HMG_2	3	1	+	3.497165280543531	-2.553354029345766	CATCATTTCTATTAATA
chr4	90873365	90873366	chr4:90873366:G:A	rs13135385	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr4	90990265	90990266	chr4:90990266:C:A	rs11727994	C	A	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr4	91623252	91623253	chr4:91623253:C:T	rs11947273	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr4	91623256	91623257	chr4:91623257:G:T	rs28676799	G	T	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr4	92231718	92231719	chr4:92231719:A:G	rs10516905	A	G	A	Sox3.mouse_HMG_2	15	1	-	1.5677104360744243	-2.212088981431372	GATCAGTGTCACTGTTG
chr4	92256228	92256229	chr4:92256229:G:C	rs7696156	G	C	G	Sox3.mouse_HMG_2	7	1	+	7.263729923546419	0.634908428458363	CATCAATGTTAATGGAA
chr4	92507183	92507184	chr4:92507184:T:C	rs7659159	T	C	C	Sox3.mouse_HMG_2	6	1	+	5.3698271134911035	-1.0194543208867877	GGTTAATGTTTTTGATA
chr4	93116812	93116813	chr4:93116813:A:G	rs72887644	A	G	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr4	93834362	93834363	chr4:93834363:G:A	rs6835250	G	A	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr4	94208873	94208874	chr4:94208874:G:A	rs183993	G	A	A	Sox3.mouse_HMG_2	4	1	+	6.100791004823634	12.490072439201525	GAGCGATGTCAGTGATT
chr4	94372406	94372407	chr4:94372407:A:T	rs6532483	A	T	A	Sox3.mouse_HMG_2	8	1	+	3.513430897995147	5.545859215743856	TATCAATGACAGTTGTC
chr4	94648064	94648065	chr4:94648065:A:T	rs7656545	A	T	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr4	94714808	94714809	chr4:94714809:T:C	rs11934616	T	C	T	Sox3.mouse_HMG_2	14	1	-	5.716687915095459	2.398621645323858	TGTGAATGGTATTGAGC
chr4	94760107	94760108	chr4:94760108:T:C	rs536138372	T	C	T	Sox3.mouse_HMG_2	12	1	+	3.184609184776878	-2.8663579531539387	TTTTAATGGCACTGATT
chr4	95017424	95017425	chr4:95017425:G:A	rs568440380	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr4	95017441	95017442	chr4:95017442:A:G	rs10018945	A	G	G	Sox3.mouse_HMG_2	1	1	+	4.366002330268206	2.3596143882487475	AAGCAATGTTAGTGTGG
chr4	95289569	95289570	chr4:95289570:A:T	rs6810943	A	T	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr4	95561094	95561095	chr4:95561095:C:A	rs6532565	C	A	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr4	95627406	95627407	chr4:95627407:A:C	rs6820560	A	C	A	Sox3.mouse_HMG_2	5	1	+	5.231317262622638	-1.6767579651704188	GCACAATGACAGTGTTG
chr4	95939042	95939043	chr4:95939043:T:A	rs75198708	T	A	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr4	95985412	95985413	chr4:95985413:A:T	rs263071	A	T	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr4	96407951	96407952	chr4:96407952:T:C	chr4:96407952:T:C	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr4	96834147	96834148	chr4:96834148:G:A	rs34260676	G	A	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr4	98526835	98526836	chr4:98526836:G:A	rs17191936	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr4	98611324	98611325	chr4:98611325:G:A	rs7700024	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr4	98639251	98639252	chr4:98639252:T:G	rs72908197	T	G	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr4	98995189	98995190	chr4:98995190:A:G	rs62323237	A	G	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr4	99276352	99276353	chr4:99276353:G:A	chr4:99276353:G:A	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.3389261488569195	-3.712712355329392	TCTCAATGGCAAAGATG
chr4	99631315	99631316	chr4:99631316:T:C	rs80085001	T	C	C	Sox3.mouse_HMG_2	8	1	+	3.5717881370262403	2.3173661708705704	AGTCAATGTTATTTGGT
chr4	99656043	99656044	chr4:99656044:C:T	rs113836829	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr4	100076163	100076164	chr4:100076164:A:C	rs78648824	A	C	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr4	100093486	100093487	chr4:100093487:G:A	rs547348330	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr4	100291045	100291046	chr4:100291046:G:A	rs78908948	G	A	G	Sox3.mouse_HMG_2	3	1	-	4.097542460039512	-0.7593134151827103	CACCAATGTCAATGAAT
chr4	100591889	100591890	chr4:100591890:A:G	rs28476753	A	G	G	Sox3.mouse_HMG_2	10	1	+	5.805917183400061	-1.1028375959151586	AATCAGTTATATTGAAG
chr4	100604342	100604343	chr4:100604343:T:C	rs1015319546	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr4	100609303	100609304	chr4:100609304:C:T	rs111528787	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr4	100631719	100631720	chr4:100631720:G:A	rs4618316	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr4	100779461	100779462	chr4:100779462:A:G	rs1396284	A	G	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr4	101597361	101597362	chr4:101597362:T:C	rs142427337	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.6732141523071244	-2.716067282070765	TGCCAATTTCAGTGGTG
chr4	101760113	101760114	chr4:101760114:C:T	rs4277781	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr4	102137356	102137357	chr4:102137357:T:C	rs236755	T	C	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr4	102466398	102466399	chr4:102466399:A:G	rs1585216	A	G	A	Sox3.mouse_HMG_2	9	1	-	3.67769612981182	2.9850435869398604	TGTGAATGATAGTGACT
chr4	102466415	102466416	chr4:102466416:C:G	rs77559485	C	G	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr4	102615103	102615104	chr4:102615104:C:T	rs230547	C	T	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr4	102859764	102859765	chr4:102859765:C:T	rs223344	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr4	103533703	103533704	chr4:103533704:C:T	rs420379	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr4	104279486	104279487	chr4:104279487:G:A	rs67125592	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr4	104394485	104394486	chr4:104394486:A:T	rs72947461	A	T	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr4	104780396	104780397	chr4:104780397:G:A	rs964967118	G	A	G	Sox3.mouse_HMG_2	8	1	+	8.382665572139537	7.16387518739504	CAGCAATGGTAGTGGTG
chr4	104780418	104780419	chr4:104780419:A:G	rs72664153	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr4	105102562	105102563	chr4:105102563:G:A	rs17429647	G	A	G	Sox3.mouse_HMG_2	0	1	-	4.078065035285929	3.5929300210318202	CATCAGTGGTAGTTATG
chr4	105150439	105150440	chr4:105150440:T:A	rs763480	T	A	A	Sox3.mouse_HMG_2	9	1	+	7.3558923363647395	1.3719110764804214	TTTTAATGTTATTGTTT
chr4	105170788	105170789	chr4:105170789:T:C	rs17430146	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr4	105215938	105215939	chr4:105215939:G:C	rs140115170	G	C	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr4	105552200	105552201	chr4:105552201:T:A	rs77567800	T	A	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr4	105606007	105606008	chr4:105606008:A:G	rs4324547	A	G	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr4	105623368	105623369	chr4:105623369:A:G	rs3796920	A	G	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr4	105747200	105747201	chr4:105747201:A:G	rs7676226	A	G	A	Sox3.mouse_HMG_2	2	1	+	4.926855082409493	3.0546371915131383	CCACAATGTCAGTAATG
chr4	105754788	105754789	chr4:105754789:A:T	rs11731714	A	T	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr4	105993180	105993181	chr4:105993181:C:T	rs1108244	C	T	C	Sox3.mouse_HMG_2	3	1	+	5.305928385503293	0.44907251028106937	CAACAATTTTATGGAGA
chr4	106212761	106212762	chr4:106212762:A:G	rs17036613	A	G	G	Sox3.mouse_HMG_2	15	1	-	4.877435910640333	1.0976364931345373	TCTCAATGAGATTGGTT
chr4	107026010	107026011	chr4:107026011:G:C	rs17037266	G	C	C	Sox3.mouse_HMG_2	5	1	+	2.117318214322327	1.59852442090716	TGTCAGAGGCATTGATT
chr4	107033865	107033866	chr4:107033866:G:C	rs139718739	G	C	.	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr4	107352407	107352408	chr4:107352408:T:C	rs203726	T	C	C	Sox3.mouse_HMG_2	6	1	+	2.1667509381266283	-4.2225304962512595	CATCAATGGCCATGAAA
chr4	107644452	107644453	chr4:107644453:G:A	rs11934943	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr4	107792751	107792752	chr4:107792752:G:A	rs75258371	G	A	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr4	107800974	107800975	chr4:107800975:A:C	rs79704888	A	C	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr4	107818754	107818755	chr4:107818755:T:C	rs61323116	T	C	T	Sox3.mouse_HMG_2	10	1	-	2.465728685286146	-4.443026094029075	GATCAGTGACAGTGTGT
chr4	108370954	108370955	chr4:108370955:T:C	rs6842122	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr4	108375373	108375374	chr4:108375374:G:A	rs11097984	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr4	108556951	108556952	chr4:108556952:C:G	rs11731416	C	G	G	Sox3.mouse_HMG_2	9	1	+	6.235065299267034	0.9437365822546729	ATTCATTTTCATTGATG
chr4	108804766	108804767	chr4:108804767:G:C	rs2044993	G	C	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr4	108907122	108907123	chr4:108907123:T:G	rs11731391	T	G	T	Sox3.mouse_HMG_2	14	1	-	10.148722669985462	4.116194052396817	CATCAATCCTAGTGATT
chr4	109060607	109060608	chr4:109060608:C:T	rs3113684	C	T	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr4	109729183	109729184	chr4:109729184:A:C	rs11737069	A	C	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr4	109810309	109810310	chr4:109810310:T:C	rs76076911	T	C	.	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr4	110225051	110225052	chr4:110225052:C:T	rs4585374	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr4	110276584	110276585	chr4:110276585:A:T	rs34628541	A	T	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr4	110412333	110412334	chr4:110412334:A:G	rs60808768	A	G	A	Sox3.mouse_HMG_2	2	1	+	4.232703994632964	2.3604861037366094	CAACAATTGCATTTAAA
chr4	110484475	110484476	chr4:110484476:G:C	rs60371652	G	C	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr4	110669087	110669088	chr4:110669088:C:T	rs2122076	C	T	C	Sox3.mouse_HMG_2	8	1	-	4.804332711037688	3.585542326293191	CTTCAATGGCATTCTTT
chr4	111132826	111132827	chr4:111132827:C:T	rs6828479	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr4	111294499	111294500	chr4:111294500:C:T	rs13125281	C	T	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr4	111323633	111323634	chr4:111323634:A:G	rs7684254	A	G	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr4	111924045	111924046	chr4:111924046:A:T	rs76743823	A	T	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr4	111959257	111959258	chr4:111959258:C:T	rs2016740	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr4	112230575	112230576	chr4:112230576:T:C	rs7699435	T	C	C	Sox3.mouse_HMG_2	15	1	+	3.8934814376322513	0.1136820201264554	GTTGAATTTTAATGATT
chr4	112230582	112230583	chr4:112230583:A:G	rs77707967	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr4	113411548	113411549	chr4:113411549:G:A	rs1525004	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr4	113446156	113446157	chr4:113446157:C:T	rs78104782	C	T	C	Sox3.mouse_HMG_2	15	1	+	8.175723308113607	11.955522725619403	GAGCAATGATATTGACA
chr4	113833145	113833146	chr4:113833146:G:T	rs13126791	G	T	G	Sox3.mouse_HMG_2	3	1	-	4.926849746574019	-1.9738204926848872	TATCCATTTCAGTGGTA
chr4	113849121	113849122	chr4:113849122:C:T	rs79041353	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr4	114230092	114230093	chr4:114230093:T:C	rs11732931	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.706715574805301	-1.682565859572589	CTTCAATTGTATTATTT
chr4	114271236	114271237	chr4:114271237:A:G	rs139348676	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr4	114701653	114701654	chr4:114701654:C:G	rs13133286	C	G	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr4	114949874	114949875	chr4:114949875:C:T	rs998359	C	T	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr4	115495492	115495493	chr4:115495493:T:A	rs6533921	T	A	A	Sox3.mouse_HMG_2	7	1	+	7.64433912476073	2.141408843517919	GGTCAAATATATTGATT
chr4	115898086	115898087	chr4:115898087:A:G	rs2389112	A	G	G	Sox3.mouse_HMG_2	4	1	+	3.456875570812212	-2.932405863565678	CAACAATTCTATTCAAC
chr4	116332947	116332948	chr4:116332948:T:C	rs6533967	T	C	C	Sox3.mouse_HMG_2	12	1	-	4.2471588757136365	3.9115373409727376	CATCAACGACATAGATT
chr4	116564316	116564317	chr4:116564317:C:T	rs4834564	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr4	116603613	116603614	chr4:116603614:C:G	rs7679562	C	G	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr4	117400078	117400079	chr4:117400079:T:C	rs17866921	T	C	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr4	118018797	118018798	chr4:118018798:T:G	rs11098419	T	G	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr4	118173309	118173310	chr4:118173310:C:T	rs11947071	C	T	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr4	118773717	118773718	chr4:118773718:A:C	rs114512772	A	C	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr4	119148490	119148491	chr4:119148491:C:A	rs6857405	C	A	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr4	119304192	119304193	chr4:119304193:T:C	rs1397611	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr4	119317918	119317919	chr4:119317919:A:G	rs10213267	A	G	a	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr4	119518093	119518094	chr4:119518094:A:G	rs534526888	A	G	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr4	119657384	119657385	chr4:119657385:A:G	rs7664440	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr4	119688568	119688569	chr4:119688569:G:T	rs2252945	G	T	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr4	119833060	119833061	chr4:119833061:G:T	rs6858155	G	T	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr4	120242963	120242964	chr4:120242964:G:A	rs9684604	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr4	120539757	120539758	chr4:120539758:C:T	rs75408534	C	T	C	Sox3.mouse_HMG_2	1	1	-	2.730914288744956	4.7373022307644135	CGTCATTGTTAGGGATT
chr4	121036578	121036579	chr4:121036579:T:C	rs1397645	T	C	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr4	121063749	121063750	chr4:121063750:T:C	rs4311329	T	C	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr4	121140740	121140741	chr4:121140741:C:G	rs13108739	C	G	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr4	121157827	121157828	chr4:121157828:C:A	rs17051300	C	A	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr4	121674478	121674479	chr4:121674479:A:G	rs4240260	A	G	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr4	122131799	122131800	chr4:122131800:C:A	rs74360618	C	A	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr4	122865676	122865677	chr4:122865677:A:G	rs308387	A	G	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr4	122968601	122968602	chr4:122968602:C:T	rs4833849	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr4	123421787	123421788	chr4:123421788:T:A	rs28477361	T	A	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr4	123674286	123674287	chr4:123674287:A:T	rs114342566	A	T	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr4	123868441	123868442	chr4:123868442:A:G	rs116819571	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.692706918437153	-1.9916672810231826	ATTCAGTGGCATTGAGT
chr4	123894410	123894411	chr4:123894411:A:G	rs3113365	A	G	A	Sox3.mouse_HMG_2	2	1	-	3.0923310991768886	-3.2745662073488555	CATCAATGTCCTTAAAG
chr4	124045852	124045853	chr4:124045853:G:A	rs78514534	G	A	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr4	124374276	124374277	chr4:124374277:C:T	rs4833978	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr4	124936783	124936784	chr4:124936784:C:T	rs1532493	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr4	125125679	125125680	chr4:125125680:C:T	rs57273892	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr4	125322310	125322311	chr4:125322311:T:G	rs2663264	T	G	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr4	125520479	125520480	chr4:125520480:A:G	rs1506351	A	G	A	Sox3.mouse_HMG_2	12	1	-	4.056535478637716	-1.9944316592930995	AAACCATTTCAGTGATA
chr4	125619556	125619557	chr4:125619557:A:G	rs72677781	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr4	125952023	125952024	chr4:125952024:T:A	rs965778	T	A	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr4	126702904	126702905	chr4:126702905:C:T	rs62324175	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr4	126756511	126756512	chr4:126756512:A:T	rs62324222	A	T	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr4	126844070	126844071	chr4:126844071:C:T	rs79042149	C	T	c	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr4	127036381	127036382	chr4:127036382:C:T	rs11098909	C	T	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr4	127449360	127449361	chr4:127449361:C:T	rs79228965	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr4	127605366	127605367	chr4:127605367:C:A	rs60404814	C	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr4	127857249	127857250	chr4:127857250:T:C	rs143991735	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.610047416363552	-3.779234018014338	ATGCAATGGCATTGGGT
chr4	128309410	128309411	chr4:128309411:C:T	rs117257723	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr4	128386561	128386562	chr4:128386562:A:G	rs7654743	A	G	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr4	128456935	128456936	chr4:128456936:C:T	rs2133464	C	T	T	Sox3.mouse_HMG_2	11	1	-	3.2383881460732833	-1.3330959822600026	GTACAATGACAGTGCTG
chr4	129153948	129153949	chr4:129153949:A:G	rs11933725	A	G	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr4	129328312	129328313	chr4:129328313:C:A	rs4604071	C	A	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr4	129623452	129623453	chr4:129623453:T:G	rs992693	T	G	G	Sox3.mouse_HMG_2	7	1	+	7.82775678928047	8.953648003125718	CATCAAATGTATTGAGT
chr4	129671701	129671702	chr4:129671702:G:T	rs17050588	G	T	T	Sox3.mouse_HMG_2	13	1	+	7.018483600708349	0.6312235617811357	CTTGAATTCCATTGATA
chr4	129893155	129893156	chr4:129893156:A:G	rs72615876	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr4	129944158	129944159	chr4:129944159:G:A	rs186178905	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr4	130053822	130053823	chr4:130053823:A:C	rs11729475	A	C	A	Sox3.mouse_HMG_2	16	1	-	5.811947851982509	5.448226162348564	TCTCAATTGCAGTCATT
chr4	130073773	130073774	chr4:130073774:A:G	rs2391581	A	G	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr4	130336432	130336433	chr4:130336433:T:C	rs6534786	T	C	T	Sox3.mouse_HMG_2	15	1	+	5.098584924324417	1.3187855068186218	ATTCAATGTTTTTGGTT
chr4	130675596	130675597	chr4:130675597:T:C	rs10006622	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr4	131548172	131548173	chr4:131548173:C:T	rs138718820	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr4	132108947	132108948	chr4:132108948:G:C	rs75232366	G	C	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr4	132108948	132108949	chr4:132108949:T:A	rs10010474	T	A	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr4	132108958	132108959	chr4:132108959:G:A	rs541911541	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr4	132180482	132180483	chr4:132180483:T:C	rs77882680	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr4	132614864	132614865	chr4:132614865:G:A	rs1347414	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr4	132614877	132614878	chr4:132614878:T:C	rs11099195	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.5878383149357798	-2.80144311944211	AAAAAATGCCATTGAAT
chr4	132642645	132642646	chr4:132642646:C:T	rs1025588	C	T	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr4	132737378	132737379	chr4:132737379:A:C	rs11099210	A	C	C	Sox3.mouse_HMG_2	7	1	-	6.521927381929095	7.64781859577434	GAAGAATTTTATTGAGT
chr4	133161811	133161812	chr4:133161812:T:C	rs4605668	T	C	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr4	133390261	133390262	chr4:133390262:A:G	rs6817338	A	G	A	Sox3.mouse_HMG_2	11	1	-	6.521927381929095	-0.16244681753124107	GAAGAATTTTATTGAGT
chr4	133659311	133659312	chr4:133659312:A:G	rs2724287	A	G	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr4	134148302	134148303	chr4:134148303:T:C	rs73859881	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr4	134353154	134353155	chr4:134353155:A:T	rs28524917	A	T	T	Sox3.mouse_HMG_2	7	1	-	4.149767171947825	-1.3531631092949858	TATCAAGTTCATAGATT
chr4	134641391	134641392	chr4:134641392:T:C	rs35327752	T	C	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr4	134658107	134658108	chr4:134658108:G:A	rs28773473	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr4	135044992	135044993	chr4:135044993:A:G	rs4530692	A	G	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr4	135045007	135045008	chr4:135045008:G:A	rs4645267	G	A	G	Sox3.mouse_HMG_2	3	1	-	3.3274570692848022	-1.5293988059374204	GATCTATGACATTGTGT
chr4	135732188	135732189	chr4:135732189:T:G	rs10006644	T	G	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr4	136012661	136012662	chr4:136012662:C:G	rs12711206	C	G	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr4	136558713	136558714	chr4:136558714:A:G	rs9683947	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr4	136665010	136665011	chr4:136665011:A:G	rs34589734	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr4	136824428	136824429	chr4:136824429:C:G	rs2612113	C	G	C	Sox3.mouse_HMG_2	16	1	-	8.419745614649088	7.180474254622582	TTTCAATTTTATTGTAG
chr4	137039499	137039500	chr4:137039500:G:A	rs6830395	G	A	a	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr4	137068643	137068644	chr4:137068644:C:G	rs4864383	C	G	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr4	137379082	137379083	chr4:137379083:G:A	rs4864416	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr4	137390340	137390341	chr4:137390341:A:C	rs756816120	A	C	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr4	137390340	137390341	chr4:137390341:A:T	chr4:137390341:A:T	A	T	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr4	137390392	137390393	chr4:137390393:C:T	rs141751870	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr4	137587264	137587265	chr4:137587265:G:C	rs72722243	G	C	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr4	137712932	137712933	chr4:137712933:G:A	rs74910795	G	A	A	Sox3.mouse_HMG_2	13	1	+	3.259267648591746	-2.792370855594566	CCAGAATGACAGTGATT
chr4	137947530	137947531	chr4:137947531:C:T	rs35247045	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr4	138335012	138335013	chr4:138335013:T:C	rs113064243	T	C	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr4	138460753	138460754	chr4:138460754:A:T	rs2976483	A	T	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr4	138488669	138488670	chr4:138488670:C:T	rs74618087	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr4	138591895	138591896	chr4:138591896:C:T	rs12641401	C	T	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr4	138707253	138707254	chr4:138707254:A:T	rs1566998	A	T	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr4	138907331	138907332	chr4:138907332:G:A	rs55764276	G	A	G	Sox3.mouse_HMG_2	0	1	+	3.9872951489541437	2.29080285525148	GATCAATAGTACTGATC
chr4	139025493	139025494	chr4:139025494:A:G	rs17050680	A	G	A	Sox3.mouse_HMG_2	5	1	+	9.501510739175918	3.1122293047980265	TTCCAATGTTATTGATG
chr4	139337974	139337975	chr4:139337975:T:C	rs6845651	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr4	139557706	139557707	chr4:139557707:T:G	rs111580374	T	G	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr4	139669063	139669064	chr4:139669064:A:G	rs795595	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.8838731223659066	-2.505408312011983	TTTCAATGTTAATGCTG
chr4	139725415	139725416	chr4:139725416:C:T	rs74476263	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr4	139761385	139761386	chr4:139761386:G:C	rs6536444	G	C	-	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr4	139761386	139761387	chr4:139761387:A:G	rs1543067	A	G	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr4	139767393	139767394	chr4:139767394:G:A	rs57319093	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr4	139989809	139989810	chr4:139989810:G:A	rs7696858	G	A	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr4	140932285	140932286	chr4:140932286:A:G	rs7658326	A	G	A	Sox3.mouse_HMG_2	12	1	-	6.860083139725909	0.8091160017950929	CATTAATGTCAGTGTTC
chr4	141154383	141154384	chr4:141154384:C:T	rs354934	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr4	141154399	141154400	chr4:141154400:G:A	rs4956350	G	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr4	141455997	141455998	chr4:141455998:T:C	rs12509285	T	C	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr4	141638565	141638566	chr4:141638566:A:T	rs80017499	A	T	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr4	141654414	141654415	chr4:141654415:A:C	rs115468796	A	C	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr4	142042214	142042215	chr4:142042215:A:T	rs4260616	A	T	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr4	142044660	142044661	chr4:142044661:C:T	rs2645813	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr4	142125548	142125549	chr4:142125549:A:C	rs28373344	A	C	C	Sox3.mouse_HMG_2	14	1	+	5.731818626279903	-0.30070999130874204	TCTCAATGTCTTTGAAA
chr4	142144026	142144027	chr4:142144027:C:A	rs72718471	C	A	C	Sox3.mouse_HMG_2	16	1	-	6.058056684546318	6.421778374180263	GATCAATGTTGTGGATG
chr4	142169898	142169899	chr4:142169899:G:C	rs173045	G	C	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr4	142549247	142549248	chr4:142549248:C:A	rs72726445	C	A	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr4	142551542	142551543	chr4:142551543:T:C	rs17016354	T	C	T	Sox3.mouse_HMG_2	15	1	+	5.768671872311725	1.9888724548059302	TTTAAATTTCAGTGATG
chr4	142828440	142828441	chr4:142828441:T:A	rs10029622	T	A	A	Sox3.mouse_HMG_2	0	1	-	3.5987235003768583	4.5054472623012245	AATCAATTTTTTTCATT
chr4	142866855	142866856	chr4:142866856:C:T	rs59762983	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr4	143752811	143752812	chr4:143752812:T:C	rs2323193	T	C	C	Sox3.mouse_HMG_2	16	1	+	1.6648296862894125	0.06183663662896155	CCTCAAGGTCAGAGATT
chr4	143762498	143762499	chr4:143762499:T:C	rs34697602	T	C	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr4	143980873	143980874	chr4:143980874:C:T	rs2089840	C	T	c	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr4	144451981	144451982	chr4:144451982:A:G	rs17019365	A	G	G	Sox3.mouse_HMG_2	4	1	+	4.49698799068245	-1.8922934436954393	CATCAGAGCTATTGATG
chr4	144599858	144599859	chr4:144599859:C:T	rs564086446	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr4	144755294	144755295	chr4:144755295:A:G	rs2353927	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr4	144818795	144818796	chr4:144818796:T:C	rs553914738	T	C	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr4	145847921	145847922	chr4:145847922:G:A	rs1027841	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr4	146175090	146175091	chr4:146175091:C:T	rs72946685	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr4	146330903	146330904	chr4:146330904:T:C	rs78502390	T	C	C	Sox3.mouse_HMG_2	8	1	-	4.456381712422696	5.675172097167193	CAGCAGTGATAGTGATT
chr4	147157892	147157893	chr4:147157893:A:G	rs116139025	A	G	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr4	147809489	147809490	chr4:147809490:A:T	rs4835456	A	T	A	Sox3.mouse_HMG_2	2	1	-	4.291563706996734	1.0099069312131985	GTTGAATTGCAGTGAAG
chr4	147931153	147931154	chr4:147931154:T:G	rs116229698	T	G	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr4	148088823	148088824	chr4:148088824:C:A	rs6535578	C	A	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr4	148215262	148215263	chr4:148215263:A:C	rs17483979	A	C	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr4	148215288	148215289	chr4:148215289:T:C	rs3857080	T	C	C	Sox3.mouse_HMG_2	4	1	-	5.823686309028446	-0.5655951253494438	TGTCAATTTTAATGTTT
chr4	148455043	148455044	chr4:148455044:A:G	rs10029199	A	G	a	Sox3.mouse_HMG_2	5	1	+	2.1406563185987824	-4.248625115779104	AACCAATGGCAGAGATA
chr4	148455053	148455054	chr4:148455054:T:C	rs7687392	T	C	T	Sox3.mouse_HMG_2	15	1	+	2.1406563185987824	-1.6391430989070137	AACCAATGGCAGAGATA
chr4	148799966	148799967	chr4:148799967:T:C	rs12509344	T	C	C	Sox3.mouse_HMG_2	14	1	+	6.455774821715073	4.442627727875073	CATGAATGGCAGTGTTT
chr4	149161442	149161443	chr4:149161443:A:G	rs11725480	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.90902587659143	-3.480255557786459	GTTCAATCTTCTTGATA
chr4	149203754	149203755	chr4:149203755:T:A	rs10520009	T	A	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr4	149204318	149204319	chr4:149204319:T:C	rs510115	T	C	T	Sox3.mouse_HMG_2	15	1	+	3.3280876396630665	-0.4517117778427289	TATCAATTGTGTTTATG
chr4	149292901	149292902	chr4:149292902:A:G	rs116445197	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.455510326131107	-2.2288638733292276	GGTTAATTTTCTTGATG
chr4	149303685	149303686	chr4:149303686:A:C	rs17624402	A	C	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr4	149988137	149988138	chr4:149988138:T:C	rs74795267	T	C	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr4	150283699	150283700	chr4:150283700:C:T	rs114767081	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr4	150680931	150680932	chr4:150680932:C:T	rs4336207	C	T	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr4	150685870	150685871	chr4:150685871:G:A	rs6836017	G	A	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr4	150934174	150934175	chr4:150934175:G:A	rs76087649	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr4	151307674	151307675	chr4:151307675:T:C	rs17634012	T	C	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr4	151389666	151389667	chr4:151389667:T:A	rs116613702	T	A	T	Sox3.mouse_HMG_2	10	1	-	4.877655421292287	-2.0310993580229333	GATAAATGCTACTGATT
chr4	151668286	151668287	chr4:151668287:G:A	rs6816002	G	A	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr4	152089544	152089545	chr4:152089545:T:G	rs11930507	T	G	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr4	152264987	152264988	chr4:152264988:G:T	rs57285939	G	T	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr4	152708436	152708437	chr4:152708437:G:A	rs4604039	G	A	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr4	152708441	152708442	chr4:152708442:G:C	rs4591578	G	C	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr4	152735485	152735486	chr4:152735486:T:A	rs114613434	T	A	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr4	153189822	153189823	chr4:153189823:G:A	rs76974256	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr4	153197372	153197373	chr4:153197373:G:A	rs6822903	G	A	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr4	153524445	153524446	chr4:153524446:T:C	rs12500924	T	C	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr4	153524454	153524455	chr4:153524455:A:G	rs79860579	A	G	A	Sox3.mouse_HMG_2	15	1	-	6.278537997468003	2.4987385799622084	AAACAATGTCAGTCATT
chr4	153610884	153610885	chr4:153610885:T:C	rs116245743	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr4	153610894	153610895	chr4:153610895:G:T	rs13135353	G	T	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr4	153725841	153725842	chr4:153725842:A:G	rs1530105	A	G	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr4	153905108	153905109	chr4:153905109:G:T	rs11942666	G	T	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr4	154029047	154029048	chr4:154029048:C:T	rs58229057	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr4	154029057	154029058	chr4:154029058:A:G	rs59388795	A	G	G	Sox3.mouse_HMG_2	12	1	-	2.3653022366999186	-3.6856649012308966	CCTCACTGACAGTGGTT
chr4	154560239	154560240	chr4:154560240:A:T	rs76666840	A	T	A	Sox3.mouse_HMG_2	2	1	+	2.9281316245919684	6.209788400375505	CAACAAGTGTATTGACA
chr4	155463341	155463342	chr4:155463342:A:G	rs114907846	A	G	.	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr4	155966576	155966577	chr4:155966577:A:G	rs72962493	A	G	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr4	155982459	155982460	chr4:155982460:G:T	rs4691200	G	T	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr4	156102448	156102449	chr4:156102449:C:T	rs28626103	C	T	C	Sox3.mouse_HMG_2	7	1	-	2.7698328491615962	-3.8589886459264595	GATCAAGGATAGAGATA
chr4	156187137	156187138	chr4:156187138:A:G	rs13115068	A	G	G	Sox3.mouse_HMG_2	15	1	-	5.932018652603281	2.1522192350974856	CCACACTGTTATTGATA
chr4	156223186	156223187	chr4:156223187:C:T	rs17034238	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr4	156231294	156231295	chr4:156231295:C:T	rs2879725	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr4	156296005	156296006	chr4:156296006:G:A	rs12233878	G	A	G	Sox3.mouse_HMG_2	15	1	+	7.407487469614507	7.841224920875848	TATCAATGATATGGAGG
chr4	156347923	156347924	chr4:156347924:C:T	rs77847642	C	T	C	Sox3.mouse_HMG_2	7	1	-	1.978617675311747	-4.6502038197763085	TGTCAATGGCTATGATA
chr4	156528609	156528610	chr4:156528610:G:A	rs1521704	G	A	G	Sox3.mouse_HMG_2	16	1	-	5.9025177011648955	7.505510750825346	TTTCATTTTCATTGATC
chr4	156538356	156538357	chr4:156538357:T:C	rs114496637	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr4	156545353	156545354	chr4:156545354:A:G	rs1521710	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr4	156619565	156619566	chr4:156619566:C:T	rs6832283	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr4	156686075	156686076	chr4:156686076:T:A	rs72698450	T	A	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr4	156942373	156942374	chr4:156942374:A:C	rs74907048	A	C	A	Sox3.mouse_HMG_2	12	1	-	5.582386318847217	-0.8042023538244978	GTTAAATTATAGTGATT
chr4	157577162	157577163	chr4:157577163:G:T	rs62334825	G	T	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr4	157665009	157665010	chr4:157665010:C:T	rs2345335	C	T	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr4	157688327	157688328	chr4:157688328:T:C	rs1490531	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr4	158353746	158353747	chr4:158353747:A:G	rs58794003	A	G	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr4	158633311	158633312	chr4:158633312:T:C	rs144210289	T	C	T	Sox3.mouse_HMG_2	2	1	-	10.5019690644263	8.629751173529945	CAACAATGCCATTGGTG
chr4	158722992	158722993	chr4:158722993:C:T	rs114501848	C	T	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr4	159195308	159195309	chr4:159195309:C:T	rs11939106	C	T	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr4	159996303	159996304	chr4:159996304:G:T	rs7683562	G	T	-	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr4	160358824	160358825	chr4:160358825:T:C	rs294516	T	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr4	161577537	161577538	chr4:161577538:C:T	rs147442296	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr4	161656661	161656662	chr4:161656662:A:G	rs78749316	A	G	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr4	161829884	161829885	chr4:161829885:G:A	rs67988099	G	A	G	Sox3.mouse_HMG_2	4	1	-	2.149373579021885	2.149373579021885	GTTCCTTGTCATTGATG
chr4	162733438	162733439	chr4:162733439:G:A	rs115480579	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr4	163237706	163237707	chr4:163237707:C:T	rs11732470	C	T	T	Sox3.mouse_HMG_2	11	1	-	6.813824190445359	2.242340062112074	TGTCAAATTCAGTGATT
chr4	163753878	163753879	chr4:163753879:C:T	rs2131861	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr4	164444250	164444251	chr4:164444251:T:G	rs1505395	T	G	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr4	165215396	165215397	chr4:165215397:G:A	rs59189518	G	A	G	Sox3.mouse_HMG_2	15	1	+	2.5642412508922803	2.9979787021536213	GAGCAATGCTAGTAAGA
chr4	165415229	165415230	chr4:165415230:T:C	rs11736871	T	C	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr4	166657992	166657993	chr4:166657993:T:C	rs147617648	T	C	c	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr4	167713878	167713879	chr4:167713879:G:A	rs1518176	G	A	G	Sox3.mouse_HMG_2	7	1	+	3.1240830220767957	-3.504738473011259	GACCAAGGTTATTGGTT
chr4	167887549	167887550	chr4:167887550:G:C	rs113568422	G	C	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr4	168097738	168097739	chr4:168097739:C:T	rs150828827	C	T	C	Sox3.mouse_HMG_2	7	1	-	5.219620219909986	-1.4092012751780691	TGACAATGATATTTATT
chr4	168604747	168604748	chr4:168604748:C:T	rs62335531	C	T	T	Sox3.mouse_HMG_2	11	1	+	3.332459850711854	10.016834050172191	TAACAATGCCACTGGTG
chr4	168604771	168604772	chr4:168604772:C:T	rs7658992	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr4	168664526	168664527	chr4:168664527:A:G	rs6839585	A	G	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr4	168668062	168668063	chr4:168668063:T:C	rs2723705	T	C	T	Sox3.mouse_HMG_2	5	1	-	8.071120396527375	1.6818389621494843	AAACAATGTCAGTGTTA
chr4	168673532	168673533	chr4:168673533:C:T	rs3109206	C	T	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr4	168881413	168881414	chr4:168881414:C:A	rs184538527	C	A	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr4	168881414	168881415	chr4:168881415:G:A	rs1048164539	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr4	169052313	169052314	chr4:169052314:C:T	rs17615499	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr4	169341880	169341881	chr4:169341881:T:G	rs4443239	T	G	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr4	170027176	170027177	chr4:170027177:C:T	rs67400066	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr4	170034216	170034217	chr4:170034217:G:T	rs11728005	G	T	G	Sox3.mouse_HMG_2	13	1	+	10.936984092485126	4.549724053557913	TGTCAATGTGATTGATT
chr4	170066484	170066485	chr4:170066485:A:G	rs1480544	A	G	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr4	170325076	170325077	chr4:170325077:T:C	rs4692823	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr4	170527556	170527557	chr4:170527557:T:C	rs4692842	T	C	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr4	170672280	170672281	chr4:170672281:C:G	rs7684621	C	G	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr4	171641883	171641884	chr4:171641884:A:G	rs13151144	A	G	A	Sox3.mouse_HMG_2	7	1	-	4.21113118326752	-1.2917990979752918	GAAGAATTCCATTGAGG
chr4	172401874	172401875	chr4:172401875:G:A	rs335997	G	A	A	Sox3.mouse_HMG_2	3	1	-	7.191716984579431	2.3348611093572096	GCACAATGCTAGTGGTA
chr4	173273383	173273384	chr4:173273384:A:G	rs74969003	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr4	173346074	173346075	chr4:173346075:C:T	rs12640749	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr4	173685658	173685659	chr4:173685659:C:A	rs75002406	C	A	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr4	173878849	173878850	chr4:173878850:G:A	rs79642259	G	A	G	Sox3.mouse_HMG_2	14	1	+	3.3156138156992405	6.633680085470842	TATCAAAGTCAGTGGGA
chr4	173899037	173899038	chr4:173899038:A:T	rs11735803	A	T	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr4	173972510	173972511	chr4:173972511:G:A	rs4075552	G	A	g	Sox3.mouse_HMG_2	7	1	+	5.436024675436076	-1.1927968196519807	CATCAATGTCAATGTGA
chr4	174018265	174018266	chr4:174018266:T:C	rs7674902	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr4	174118425	174118426	chr4:174118426:T:A	rs148150151	T	A	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr4	174128052	174128053	chr4:174128053:G:A	rs58655648	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr4	174151681	174151682	chr4:174151682:A:C	rs6850805	A	C	A	Sox3.mouse_HMG_2	4	1	+	2.4447122456004147	-4.463362982192643	GTTCAAGGCTATAGATG
chr4	174153261	174153262	chr4:174153262:A:G	rs12510116	A	G	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr4	174496511	174496512	chr4:174496512:T:A	rs45444797	T	A	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr4	174538336	174538337	chr4:174538337:C:T	rs76365297	C	T	C	Sox3.mouse_HMG_2	9	1	+	2.742719552417756	3.4353720952897158	CAGCAATGGCCTTGAGG
chr4	174744217	174744218	chr4:174744218:T:C	rs6823566	T	C	t	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr4	174744218	174744219	chr4:174744219:G:A	rs76014598	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr4	174999685	174999686	chr4:174999686:T:C	rs1824907	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr4	175451617	175451618	chr4:175451618:T:C	rs73013865	T	C	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr4	175562591	175562592	chr4:175562592:A:T	rs191425438	A	T	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr4	175951768	175951769	chr4:175951769:G:A	rs4690647	G	A	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr4	176121158	176121159	chr4:176121159:C:T	rs28695418	C	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr4	176335822	176335823	chr4:176335823:A:G	rs71613792	A	G	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr4	176921112	176921113	chr4:176921113:G:T	rs13152811	G	T	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr4	177196471	177196472	chr4:177196472:G:A	rs13137214	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr4	177196520	177196521	chr4:177196521:A:C	rs13136705	A	C	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr4	177367550	177367551	chr4:177367551:A:G	rs192033210	A	G	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr4	177957969	177957970	chr4:177957970:G:C	rs6826177	G	C	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr4	178039914	178039915	chr4:178039915:A:C	rs1023907	A	C	A	Sox3.mouse_HMG_2	4	1	+	3.5716895418962373	-3.33638568589682	AAACAAGGTTAGTGAAA
chr4	178062349	178062350	chr4:178062350:C:G	rs138747567	C	G	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr4	178219110	178219111	chr4:178219111:A:G	rs12646139	A	G	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr4	178480785	178480786	chr4:178480786:G:C	rs4270615	G	C	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr4	178977012	178977013	chr4:178977013:T:C	rs13102434	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.5384389103528866	-2.8508425240250044	TCTCAATTTTAGTTACT
chr4	179109351	179109352	chr4:179109352:T:C	rs28868956	T	C	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr4	179251335	179251336	chr4:179251336:T:A	rs13128514	T	A	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr4	179752669	179752670	chr4:179752670:C:T	rs11736914	C	T	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr4	180160088	180160089	chr4:180160089:A:G	rs10012121	A	G	A	Sox3.mouse_HMG_2	10	1	+	3.127478518194084	-3.7812762611211386	CTTCAATGGCATAGCTT
chr4	180409211	180409212	chr4:180409212:A:G	rs4624698	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr4	180637882	180637883	chr4:180637883:G:C	rs6844810	G	C	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr4	181019430	181019431	chr4:181019431:A:G	rs35055758	A	G	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr4	181361775	181361776	chr4:181361776:G:A	rs17071183	G	A	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr4	181509565	181509566	chr4:181509566:T:C	rs10520486	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.6713555625259444	-4.717925871851944	GGTCAATTCTGTGGATG
chr4	181996842	181996843	chr4:181996843:G:T	chr4:181996843:G:T	G	T	G	Sox3.mouse_HMG_2	7	1	+	10.89247218513834	9.766580971293093	GATCAATGGTAGTGGGA
chr4	181996871	181996872	chr4:181996872:G:C	rs11132102	G	C	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr4	181998599	181998600	chr4:181998600:A:G	rs11946900	A	G	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr4	182276208	182276209	chr4:182276209:A:G	rs144345989	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr4	182538230	182538231	chr4:182538231:T:G	rs4862075	T	G	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr4	182557563	182557564	chr4:182557564:G:A	rs10001981	G	A	G	Sox3.mouse_HMG_2	1	1	+	2.404970525082437	4.411358467101894	GGTCTTTTTTATTGATG
chr4	182575193	182575194	chr4:182575194:A:G	rs13126716	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr4	183146578	183146579	chr4:183146579:C:G	rs188802277	C	G	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr4	183263985	183263986	chr4:183263986:C:G	rs150185381	C	G	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr4	183420141	183420142	chr4:183420142:T:C	rs4241766	T	C	t	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr4	183637738	183637739	chr4:183637739:T:C	rs147294550	T	C	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr4	183656116	183656117	chr4:183656117:T:C	rs73002733	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr4	183799316	183799317	chr4:183799317:G:A	rs4862253	G	A	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr4	183958882	183958883	chr4:183958883:C:T	rs17363675	C	T	C	Sox3.mouse_HMG_2	15	1	+	3.666898876069267	7.446698293575063	TTTCAGTGATATTGACG
chr4	183960207	183960208	chr4:183960208:C:G	rs1379689536	C	G	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr4	184017935	184017936	chr4:184017936:A:G	rs1970894	A	G	G	Sox3.mouse_HMG_2	4	1	+	2.327515534613102	-4.061765899764788	GATCACTGGGAGTGAAT
chr4	184105223	184105224	chr4:184105224:T:C	rs11132224	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr4	184121125	184121126	chr4:184121126:T:A	rs4861600	T	A	A	Sox3.mouse_HMG_2	16	1	-	2.639295264046497	3.214591380165693	TGTCAATGGGCTTGATA
chr4	184299161	184299162	chr4:184299162:G:C	rs7672338	G	C	g	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr4	184299208	184299209	chr4:184299209:G:A	rs4862357	G	A	g	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr4	184331865	184331866	chr4:184331866:C:T	rs793900	C	T	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr4	184424935	184424936	chr4:184424936:A:G	rs10011243	A	G	G	Sox3.mouse_HMG_2	15	1	-	6.587361300734226	2.8075618832284306	GATGAATGTCATGGATT
chr4	184479593	184479594	chr4:184479594:G:A	rs7658103	G	A	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr4	184535029	184535030	chr4:184535030:G:T	rs13130427	G	T	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr4	184613534	184613535	chr4:184613535:C:T	rs28360675	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr4	184613570	184613571	chr4:184613571:A:C	rs6839175	A	C	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr4	184827039	184827040	chr4:184827040:A:G	rs9686055	A	G	G	Sox3.mouse_HMG_2	16	1	+	4.173860623446281	4.385435049931531	GTTAAATGCTAGTGAGA
chr4	184827056	184827057	chr4:184827057:C:T	rs540952314	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr4	184970279	184970280	chr4:184970280:T:C	rs13108248	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr4	184980375	184980376	chr4:184980376:C:T	rs72706985	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr4	184980724	184980725	chr4:184980725:G:T	rs58635817	G	T	g	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr4	185112979	185112980	chr4:185112980:A:G	rs1872719	A	G	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr4	185132720	185132721	chr4:185132721:A:G	rs7678537	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.62499550624787	-2.764285928130019	TTTCAATTCTTTTGGTT
chr4	185306377	185306378	chr4:185306378:T:G	rs753359	T	G	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr4	185395843	185395844	chr4:185395844:A:T	rs6818337	A	T	A	Sox3.mouse_HMG_2	8	1	-	4.021119354754052	1.988691037005343	CTACATTTTTAGTGATT
chr4	185467188	185467189	chr4:185467189:T:C	rs7677639	T	C	t	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr4	185825877	185825878	chr4:185825878:C:A	rs62335730	C	A	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr4	185912888	185912889	chr4:185912889:A:T	rs77636683	A	T	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr4	185929049	185929050	chr4:185929050:C:T	rs10013071	C	T	t	Sox3.mouse_HMG_2	3	1	+	7.816117157134451	2.9592612819122293	TCACAATTATAGTGATA
chr4	186012905	186012906	chr4:186012906:C:T	rs75747770	C	T	c	Sox3.mouse_HMG_2	0	1	+	3.792086118848263	3.3069511045941544	CATCACTGTTAGTGTGA
chr4	186204013	186204014	chr4:186204014:T:A	rs13106826	T	A	T	Sox3.mouse_HMG_2	6	1	+	4.172391305646123	-2.7356839221469347	GATTACTGTTATTGACT
chr4	186266997	186266998	chr4:186266998:A:C	rs3822057	A	C	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr4	186725210	186725211	chr4:186725211:G:T	rs76458105	G	T	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr4	186829983	186829984	chr4:186829984:C:T	rs1583218	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr4	186829999	186830000	chr4:186830000:C:T	rs1583219	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr4	187135517	187135518	chr4:187135518:G:A	rs9995596	G	A	A	Sox3.mouse_HMG_2	7	1	+	2.981050398696497	-3.6477710963915597	AATCCATGTTAGTCATG
chr4	187151866	187151867	chr4:187151867:T:C	rs6816104	T	C	T	Sox3.mouse_HMG_2	2	1	+	7.4121956926018875	1.0452983860761424	GTTCAATGATAGTGGAA
chr4	187151873	187151874	chr4:187151874:T:C	rs1532020	T	C	T	Sox3.mouse_HMG_2	9	1	+	7.4121956926018875	6.719543149729929	GTTCAATGATAGTGGAA
chr4	187289527	187289528	chr4:187289528:T:G	rs34007530	T	G	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr4	187289551	187289552	chr4:187289552:A:G	rs28567978	A	G	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr4	187893157	187893158	chr4:187893158:T:C	rs73013391	T	C	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr4	187990687	187990688	chr4:187990688:T:C	rs6836268	T	C	C	Sox3.mouse_HMG_2	12	1	-	4.478698025185837	4.143076490444938	TATCCATTTTATAGATG
chr4	188202030	188202031	chr4:188202031:C:G	rs13109347	C	G	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr4	188266222	188266223	chr4:188266223:G:A	rs79006731	G	A	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr4	188449582	188449583	chr4:188449583:G:A	rs2135743	G	A	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr4	188480686	188480687	chr4:188480687:G:C	rs74354955	G	C	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr4	189129541	189129542	chr4:189129542:T:C	rs4623064	T	C	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr4	189129547	189129548	chr4:189129548:C:A	rs4618357	C	A	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr4	189255792	189255793	chr4:189255793:G:T	rs7660355	G	T	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr4	189341048	189341049	chr4:189341049:C:T	rs34649146	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr4	189375780	189375781	chr4:189375781:T:C	rs114036516	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr4	189552233	189552234	chr4:189552234:G:C	rs4863194	G	C	G	Sox3.mouse_HMG_2	7	1	+	6.7661727074905675	0.13735121240250997	TTTCAAGGGTAGTGATG
chr4	189566326	189566327	chr4:189566327:C:A	rs144648900	C	A	C	Sox3.mouse_HMG_2	2	1	-	2.7372122386122055	7.891086905292096	CTGCAGTGTCAGTGATG
chr4	189720193	189720194	chr4:189720194:A:G	rs540304880	A	G	.	Sox3.mouse_HMG_2	6	1	-	4.862714647859223	-1.5265667865186676	CATCAATTGAATAGATA
chr5	86525	86526	chr5:86526:A:G	rs77465551	A	G	A	Sox3.mouse_HMG_2	12	1	-	3.9255287649766304	-2.1254383729541866	GCTAAATGCTATTGGTC
chr5	308236	308237	chr5:308237:T:C	rs56075848	T	C	C	Sox3.mouse_HMG_2	2	1	+	1.3025009709686883	-5.064396335557056	TGTCCATGCCAGTGACC
chr5	337869	337870	chr5:337870:A:G	rs7701977	A	G	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr5	438693	438694	chr5:438694:C:T	rs72717425	C	T	t	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr5	442559	442560	chr5:442560:C:T	rs139173233	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr5	460757	460758	chr5:460758:C:A	rs190513726	C	A	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr5	999547	999548	chr5:999548:C:T	rs72705182	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr5	1235628	1235629	chr5:1235629:G:A	rs76827400	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr5	1442726	1442727	chr5:1442727:C:T	rs13189021	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr5	1693086	1693087	chr5:1693087:G:A	rs10041610	G	A	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr5	1696816	1696817	chr5:1696817:C:T	rs6889740	C	T	C	Sox3.mouse_HMG_2	7	1	-	3.210567610651065	-3.418253884436992	CTACAATGGCATTAAAG
chr5	1696838	1696839	chr5:1696839:T:C	rs12520553	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr5	1959636	1959637	chr5:1959637:C:T	rs872807	C	T	t	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	2335359	2335360	chr5:2335360:A:G	rs2247706	A	G	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr5	2515760	2515761	chr5:2515761:G:A	rs3112410	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr5	2637712	2637713	chr5:2637713:C:T	rs323672	C	T	c	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr5	2723951	2723952	chr5:2723952:C:T	rs114846434	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr5	2741278	2741279	chr5:2741279:C:T	rs2962563	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr5	2851741	2851742	chr5:2851742:G:A	rs559379	G	A	A	Sox3.mouse_HMG_2	0	1	+	10.947527211788396	9.251034918085733	GATCGATTCTATTGATT
chr5	3130949	3130950	chr5:3130950:G:A	rs903397	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr5	3251763	3251764	chr5:3251764:C:T	rs62338477	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr5	3276887	3276888	chr5:3276888:T:C	rs34035132	T	C	t	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr5	3276890	3276891	chr5:3276891:C:G	rs34800353	C	G	c	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr5	3276893	3276894	chr5:3276894:C:T	rs78317438	C	T	c	Sox3.mouse_HMG_2	15	1	-	5.847482264243902	6.281219715505243	TGTCAGTGCCATTGAGT
chr5	3604563	3604564	chr5:3604564:C:A	rs6867483	C	A	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr5	3607301	3607302	chr5:3607302:C:A	rs1664711	C	A	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	3750535	3750536	chr5:3750536:A:G	rs9790954	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr5	3996310	3996311	chr5:3996311:C:T	rs7724210	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr5	4204795	4204796	chr5:4204796:C:A	rs7734785	C	A	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr5	4533386	4533387	chr5:4533387:G:T	rs7733851	G	T	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr5	4921276	4921277	chr5:4921277:A:G	rs1669748	A	G	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr5	5717096	5717097	chr5:5717097:T:C	rs7729879	T	C	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr5	6358710	6358711	chr5:6358711:C:A	rs553273946	C	A	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr5	6673422	6673423	chr5:6673423:C:T	rs28434783	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr5	6702501	6702502	chr5:6702502:C:G	rs61616385	C	G	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr5	6926763	6926764	chr5:6926764:T:C	rs6865631	T	C	T	Sox3.mouse_HMG_2	16	1	-	1.2320050220107295	1.4435794484959803	CAGCAATGCCAGGGAGA
chr5	6926767	6926768	chr5:6926768:C:T	rs7720618	C	T	C	Sox3.mouse_HMG_2	12	1	-	1.2320050220107295	1.5676265567516288	CAGCAATGCCAGGGAGA
chr5	7256777	7256778	chr5:7256778:T:C	rs77527717	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr5	7515568	7515569	chr5:7515569:A:G	rs17826546	A	G	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr5	7649359	7649360	chr5:7649360:T:C	rs1560172	T	C	T	Sox3.mouse_HMG_2	11	1	+	2.9158969398025296	-3.768477259657805	TCTCAATGTTCTTCATT
chr5	7655599	7655600	chr5:7655600:C:T	rs72710480	C	T	c	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr5	7819186	7819187	chr5:7819187:G:A	rs115077063	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr5	8180831	8180832	chr5:8180832:C:G	rs1506122	C	G	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr5	8291116	8291117	chr5:8291117:C:T	rs6887466	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr5	8544069	8544070	chr5:8544070:T:C	rs1700576	T	C	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr5	8687106	8687107	chr5:8687107:T:C	rs200046	T	C	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr5	8893365	8893366	chr5:8893366:A:G	rs2963330	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr5	8919665	8919666	chr5:8919666:A:G	rs12519046	A	G	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr5	8919862	8919863	chr5:8919863:A:G	rs2962669	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr5	9423721	9423722	chr5:9423722:G:T	rs17258120	G	T	G	Sox3.mouse_HMG_2	16	1	+	4.715690812575878	5.0794125022098235	GAACAATGCAAGTGAGG
chr5	10040655	10040656	chr5:10040656:C:T	rs314740	C	T	C	Sox3.mouse_HMG_2	7	1	-	2.757044660933105	-3.871776834154948	CTCAAATGTCATTGATT
chr5	10050360	10050361	chr5:10050361:A:C	rs138901222	A	C	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr5	10124413	10124414	chr5:10124414:G:T	rs2658099	G	T	G	Sox3.mouse_HMG_2	15	1	+	3.3588538764756626	6.095981021195689	CAACAATTCCATGGAGA
chr5	10213078	10213079	chr5:10213079:C:T	rs6868531	C	T	C	Sox3.mouse_HMG_2	3	1	-	2.6529242504503525	1.8027733210807417	GATGAAGGACAGTGATT
chr5	10336063	10336064	chr5:10336064:G:A	rs75783352	G	A	G	Sox3.mouse_HMG_2	16	1	+	5.457949557187685	5.246375130702434	TGTCAATGTCATTTTTG
chr5	10467144	10467145	chr5:10467145:C:A	rs12520289	C	A	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr5	10485680	10485681	chr5:10485681:C:T	rs532202598	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr5	10548503	10548504	chr5:10548504:A:T	rs12515831	A	T	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr5	11310441	11310442	chr5:11310442:C:T	rs258638	C	T	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr5	11518907	11518908	chr5:11518908:A:G	rs191877964	A	G	G	Sox3.mouse_HMG_2	1	1	-	4.593539681326735	4.573321704036092	ATTCAATGACAGAGATA
chr5	12013754	12013755	chr5:12013755:C:T	rs74860806	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr5	12193302	12193303	chr5:12193303:G:A	rs2968091	G	A	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr5	12896644	12896645	chr5:12896645:T:C	rs944535954	T	C	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr5	13026975	13026976	chr5:13026976:T:C	rs111890809	T	C	t	Sox3.mouse_HMG_2	4	1	-	4.366353153641882	-2.0229282807360085	TGTCAATCATATTGGTA
chr5	13326302	13326303	chr5:13326303:G:A	rs11739513	G	A	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr5	13375356	13375357	chr5:13375357:C:T	rs181256271	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr5	13568016	13568017	chr5:13568017:C:T	rs59364960	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr5	14013086	14013087	chr5:14013087:G:A	rs4701593	G	A	G	Sox3.mouse_HMG_2	0	1	-	4.459364251373729	3.974229237119622	CACCAATGCTATTGTGA
chr5	14054619	14054620	chr5:14054620:A:G	rs57287421	A	G	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr5	14498617	14498618	chr5:14498618:G:A	rs26107	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr5	15021965	15021966	chr5:15021966:G:A	rs79249357	G	A	A	Sox3.mouse_HMG_2	11	1	+	1.8380596413619694	-2.733424486971316	CCCCAATGTCAGTGGGG
chr5	15173097	15173098	chr5:15173098:A:G	rs921041	A	G	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr5	15576646	15576647	chr5:15576647:T:C	rs9312894	T	C	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr5	15686234	15686235	chr5:15686235:T:A	rs4701637	T	A	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr5	15687606	15687607	chr5:15687607:G:A	rs16867548	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr5	15752894	15752895	chr5:15752895:A:G	rs111366337	A	G	A	Sox3.mouse_HMG_2	9	1	-	10.14382874564325	9.45117620277129	GAACAATGATAGTGAAA
chr5	15933459	15933460	chr5:15933460:A:G	rs62348110	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr5	16453723	16453724	chr5:16453724:T:A	rs26377	T	A	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr5	16547584	16547585	chr5:16547585:G:A	rs75163716	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr5	16589740	16589741	chr5:16589741:T:C	rs2451851	T	C	c	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr5	16659174	16659175	chr5:16659175:C:A	rs252446	C	A	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr5	16659216	16659217	chr5:16659217:C:T	rs407524	C	T	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr5	16791679	16791680	chr5:16791680:A:G	rs76292825	A	G	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr5	16871113	16871114	chr5:16871114:G:T	rs253315	G	T	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr5	16884917	16884918	chr5:16884918:G:C	rs114639400	G	C	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr5	16884918	16884919	chr5:16884919:G:A	rs10069811	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr5	16983027	16983028	chr5:16983028:G:A	rs79522620	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr5	17234468	17234469	chr5:17234469:C:T	rs1105298	C	T	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr5	17282786	17282787	chr5:17282787:C:T	rs77499817	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.699317048067094	-3.352321456119217	CTTCTATTTAATTGATT
chr5	17309687	17309688	chr5:17309688:T:C	rs298514	T	C	T	Sox3.mouse_HMG_2	4	1	-	4.486518032724384	-1.9027634016535055	TATCATTTACATTGGTG
chr5	17415087	17415088	chr5:17415088:G:A	rs17658764	G	A	A	Sox3.mouse_HMG_2	11	1	+	4.177629960469791	-0.39385416786349353	GTTCAAGTTCAGTGAGT
chr5	17428516	17428517	chr5:17428517:C:T	rs142001602	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr5	18020237	18020238	chr5:18020238:G:T	rs1390633	G	T	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr5	18069124	18069125	chr5:18069125:A:G	rs633230	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr5	18069135	18069136	chr5:18069136:T:C	rs633217	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr5	18113984	18113985	chr5:18113985:A:G	rs2561643	A	G	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr5	18394970	18394971	chr5:18394971:G:C	rs67007820	G	C	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr5	19001098	19001099	chr5:19001099:G:C	rs74721965	G	C	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr5	19140908	19140909	chr5:19140909:C:G	rs6889627	C	G	G	Sox3.mouse_HMG_2	0	1	+	6.521665991782486	6.826299509306674	CATTATTTTTATTGATT
chr5	19140910	19140911	chr5:19140911:T:C	rs6874395	T	C	T	Sox3.mouse_HMG_2	2	1	+	6.521665991782486	0.15476868525674242	CATTATTTTTATTGATT
chr5	19243406	19243407	chr5:19243407:C:A	rs12518540	C	A	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr5	19243437	19243438	chr5:19243438:T:C	rs6884800	T	C	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr5	19391312	19391313	chr5:19391313:C:G	rs1512549	C	G	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr5	19565224	19565225	chr5:19565225:A:G	rs347711	A	G	G	Sox3.mouse_HMG_2	5	1	+	4.243043405653475	-2.146238028724414	AATCAATGGTCTTGGGT
chr5	19751471	19751472	chr5:19751472:G:C	rs115580283	G	C	G	Sox3.mouse_HMG_2	3	1	-	3.4785977565671287	-2.571921553322171	GATCAATCATAGTGGAA
chr5	19758885	19758886	chr5:19758886:T:G	rs4276412	T	G	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr5	19925749	19925750	chr5:19925750:C:T	rs28722858	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr5	19925773	19925774	chr5:19925774:C:T	rs11951930	C	T	C	Sox3.mouse_HMG_2	11	1	-	4.035747041524729	-0.5357370868085556	GCTCAATTGTCGTGAGT
chr5	19950985	19950986	chr5:19950986:A:G	rs2089556	A	G	G	Sox3.mouse_HMG_2	5	1	+	14.13508561382391	7.745804179446017	GTTCAATGGCAGTGATT
chr5	20283968	20283969	chr5:20283969:T:C	rs11949349	T	C	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	20575945	20575946	chr5:20575946:G:C	rs181364989	G	C	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr5	20832829	20832830	chr5:20832830:T:C	rs7443674	T	C	T	Sox3.mouse_HMG_2	4	1	-	3.8494519018360855	-2.539829532541803	TCTCAATGTTAGTCTTA
chr5	21160461	21160462	chr5:21160462:C:T	rs371821	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr5	22103504	22103505	chr5:22103505:G:A	rs7448927	G	A	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr5	22372667	22372668	chr5:22372668:T:C	rs13163688	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr5	22899994	22899995	chr5:22899995:C:T	rs4701306	C	T	c	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr5	23132758	23132759	chr5:23132759:C:A	rs1435231	C	A	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr5	23615829	23615830	chr5:23615830:T:A	rs6864635	T	A	t	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr5	23951098	23951099	chr5:23951099:A:G	rs10078669	A	G	a	Sox3.mouse_HMG_2	16	1	+	7.159561502262023	7.3711359287472735	CATCAAAGATATTGAGA
chr5	24486695	24486696	chr5:24486696:C:T	rs1169561	C	T	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr5	24870921	24870922	chr5:24870922:A:G	rs1353061	A	G	G	Sox3.mouse_HMG_2	1	1	+	9.120361808515426	7.113973866495969	CATCAATGTTAATGAGC
chr5	25478484	25478485	chr5:25478485:G:A	rs17525483	G	A	g	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr5	26004254	26004255	chr5:26004255:C:A	chr5:26004255:C:A	C	A	C	Sox3.mouse_HMG_2	7	1	-	1.6815813263598496	0.5556901125146035	CCTTATTGGCAGTGATG
chr5	26803252	26803253	chr5:26803253:C:G	rs62343985	C	G	C	Sox3.mouse_HMG_2	7	1	-	3.8258217251767617	-2.8029997699112963	AAACAAAGTCATTGAGA
chr5	26882865	26882866	chr5:26882866:C:T	rs76579767	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr5	27291984	27291985	chr5:27291985:G:A	rs72729012	G	A	G	Sox3.mouse_HMG_2	5	1	+	7.078034829173654	13.467316263551545	GGTCAGTGGCATTGAGT
chr5	28131157	28131158	chr5:28131158:G:A	rs10472602	G	A	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr5	28495978	28495979	chr5:28495979:C:T	rs4560558	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr5	29002263	29002264	chr5:29002264:T:G	rs36080912	T	G	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr5	29230925	29230926	chr5:29230926:A:G	rs75070254	A	G	G	Sox3.mouse_HMG_2	11	1	-	2.1061469665710035	-4.578227232889333	CTTCATTGGCATTGGAA
chr5	29485623	29485624	chr5:29485624:T:C	rs652386	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr5	29786916	29786917	chr5:29786917:G:A	rs113719888	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr5	29786926	29786927	chr5:29786927:T:A	rs1167472417	T	A	T	Sox3.mouse_HMG_2	1	1	+	5.559915729802063	8.255139288855357	ATTCCATGCTATTGATC
chr5	29803845	29803846	chr5:29803846:T:C	rs7711565	T	C	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr5	30037069	30037070	chr5:30037070:G:A	rs7704553	G	A	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr5	30076207	30076208	chr5:30076208:C:G	rs7735679	C	G	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr5	30105470	30105471	chr5:30105471:A:G	rs12186990	A	G	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr5	30997705	30997706	chr5:30997706:A:G	rs1500169	A	G	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr5	31250856	31250857	chr5:31250857:C:T	rs13186740	C	T	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr5	31816810	31816811	chr5:31816811:T:A	rs73060329	T	A	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr5	32201296	32201297	chr5:32201297:A:G	rs114048683	A	G	A	Sox3.mouse_HMG_2	9	1	-	4.346418909793011	3.6537663669210527	AATCAATGCTATTTCTT
chr5	32472002	32472003	chr5:32472003:G:T	rs1807386	G	T	G	Sox3.mouse_HMG_2	7	1	+	1.9872999272240384	0.8614087133787934	CATAAATGACAGTGGGG
chr5	32483445	32483446	chr5:32483446:T:C	rs111456919	T	C	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr5	32776566	32776567	chr5:32776567:C:T	rs13436551	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr5	33170716	33170717	chr5:33170717:G:A	rs1479644	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr5	33220748	33220749	chr5:33220749:G:C	rs7730018	G	C	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr5	33321466	33321467	chr5:33321467:T:C	rs141436925	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr5	33444345	33444346	chr5:33444346:A:C	rs67450756	A	C	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr5	33457429	33457430	chr5:33457430:T:A	rs2270903	T	A	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr5	33711660	33711661	chr5:33711661:T:G	rs11739711	T	G	T	Sox3.mouse_HMG_2	16	1	+	3.7135950290724327	3.3498733394384868	AATCAATGTTAATAAAT
chr5	33835068	33835069	chr5:33835069:A:G	rs62349833	A	G	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr5	34035503	34035504	chr5:34035504:T:C	rs17583316	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr5	34045803	34045804	chr5:34045804:A:G	rs9292520	A	G	.	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr5	34329313	34329314	chr5:34329314:A:C	rs11747776	A	C	-	Sox3.mouse_HMG_2	16	1	+	2.91635156461329	1.8886546310720354	GAAAAATGACATTGGTA
chr5	34538136	34538137	chr5:34538137:C:T	rs4703456	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr5	34538137	34538138	chr5:34538138:A:G	rs77065851	A	G	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr5	34563993	34563994	chr5:34563994:C:G	rs75685365	C	G	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr5	34710078	34710079	chr5:34710079:G:A	rs146757107	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr5	34840735	34840736	chr5:34840736:A:G	rs6451173	A	G	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr5	35030587	35030588	chr5:35030588:C:T	rs772379272	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr5	35210219	35210220	chr5:35210220:C:T	rs34024951	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr5	35342995	35342996	chr5:35342996:G:C	rs2115469	G	C	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr5	35908371	35908372	chr5:35908372:A:G	rs1010599	A	G	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr5	35908387	35908388	chr5:35908388:T:G	chr5:35908388:T:G	T	G	T	Sox3.mouse_HMG_2	5	1	-	2.5028940072370753	-4.405181220555983	CATAAAGGTTATTGAGG
chr5	36038988	36038989	chr5:36038989:G:C	rs4091908	G	C	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr5	36361593	36361594	chr5:36361594:G:T	rs4413557	G	T	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr5	36628045	36628046	chr5:36628046:A:C	rs1864214	A	C	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr5	36631388	36631389	chr5:36631389:T:C	rs3733810	T	C	T	Sox3.mouse_HMG_2	12	1	+	4.556688725365234	-1.4942784125655821	AAACAACTTTATTGAAG
chr5	36875646	36875647	chr5:36875647:C:T	rs115453677	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr5	37490693	37490694	chr5:37490694:A:G	rs7727685	A	G	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr5	37578576	37578577	chr5:37578577:G:A	rs12188314	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr5	37604802	37604803	chr5:37604803:G:T	rs1400851	G	T	T	Sox3.mouse_HMG_2	6	1	-	7.276201887602998	6.757408094187831	GATCAACGTTATTAATT
chr5	37735746	37735747	chr5:37735747:A:G	rs2910798	A	G	A	Sox3.mouse_HMG_2	12	1	-	5.597625038998978	-0.45334209893183885	TCTCAATTACAGTGACC
chr5	38151847	38151848	chr5:38151848:T:C	rs4583910	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.687146751142234	-1.7021346832356548	CACCAATTGTATTGGGG
chr5	38284605	38284606	chr5:38284606:G:A	rs6871786	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr5	38382925	38382926	chr5:38382926:C:A	chr5:38382926:C:A	C	A	C	Sox3.mouse_HMG_2	13	1	-	4.262122486781524	-2.1251375521456883	GATCAACATCAGTGATG
chr5	38640085	38640086	chr5:38640086:G:A	rs327284	G	A	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr5	38642449	38642450	chr5:38642450:G:T	rs327287	G	T	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr5	38744348	38744349	chr5:38744349:T:C	rs11954915	T	C	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr5	38753346	38753347	chr5:38753347:C:A	rs75845289	C	A	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr5	38796526	38796527	chr5:38796527:T:G	rs34518064	T	G	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr5	38872928	38872929	chr5:38872929:C:A	rs141451503	C	A	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr5	39258289	39258290	chr5:39258290:G:A	rs113741668	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr5	39419647	39419648	chr5:39419648:G:T	rs11739328	G	T	G	Sox3.mouse_HMG_2	0	1	+	1.7451857509090734	0.9554172191307768	GTTCAAGGGTAATGATC
chr5	39426224	39426225	chr5:39426225:T:C	rs3812039	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr5	39426254	39426255	chr5:39426255:T:A	rs3812038	T	A	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr5	39463094	39463095	chr5:39463095:G:A	rs17335879	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr5	40046559	40046560	chr5:40046560:T:C	rs2939374	T	C	C	Sox3.mouse_HMG_2	11	1	+	3.588003636855352	-3.0963705626049833	CATCACTTTCATTGGCT
chr5	40260870	40260871	chr5:40260871:G:T	rs116610283	G	T	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr5	40353688	40353689	chr5:40353689:A:G	rs10044083	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr5	40433124	40433125	chr5:40433125:C:T	rs56309786	C	T	C	Sox3.mouse_HMG_2	13	1	-	1.512439911712315	-4.539198592473997	GGTAAATGTCAGTGGAC
chr5	40504245	40504246	chr5:40504246:T:C	rs1157159	T	C	T	Sox3.mouse_HMG_2	11	1	+	4.709034492519247	-1.9753397069410898	GAAAAATGCCATTGAAA
chr5	40551375	40551376	chr5:40551376:A:G	rs13160426	A	G	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr5	40599183	40599184	chr5:40599184:C:A	rs16870146	C	A	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr5	40606191	40606192	chr5:40606192:A:T	rs10473203	A	T	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr5	40654368	40654369	chr5:40654369:C:T	rs10043891	C	T	C	Sox3.mouse_HMG_2	5	1	-	4.572773247393453	10.962054681771344	TGTCAGTTGTATTGTTT
chr5	40665896	40665897	chr5:40665897:C:G	rs1395084	C	G	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr5	40670717	40670718	chr5:40670718:A:G	rs4599576	A	G	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr5	40895475	40895476	chr5:40895476:G:T	rs11739984	G	T	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr5	40937361	40937362	chr5:40937362:G:A	rs151240598	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr5	41252416	41252417	chr5:41252417:C:T	rs114128390	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr5	41505628	41505629	chr5:41505629:C:T	rs4346812	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr5	42804012	42804013	chr5:42804013:T:C	rs13168440	T	C	T	Sox3.mouse_HMG_2	15	1	-	6.18026195894337	5.746524507682029	AAGCAATGTTATTGTAG
chr5	43040715	43040716	chr5:43040716:C:T	rs79997163	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr5	43258425	43258426	chr5:43258426:A:G	rs10462048	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	43363030	43363031	chr5:43363031:G:A	rs10062598	G	A	g	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr5	43521455	43521456	chr5:43521456:A:G	rs28437972	A	G	-	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr5	44185576	44185577	chr5:44185577:C:T	rs72757366	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr5	44189711	44189712	chr5:44189712:T:C	rs72759339	T	C	C	Sox3.mouse_HMG_2	14	1	-	2.359517619774179	-0.9585486499974221	GGACAATGCTGTTGAAC
chr5	44189715	44189716	chr5:44189716:C:A	rs188027348	C	A	C	Sox3.mouse_HMG_2	10	1	-	2.359517619774179	2.359517619774179	GGACAATGCTGTTGAAC
chr5	44361403	44361404	chr5:44361404:G:A	rs339508	G	A	G	Sox3.mouse_HMG_2	2	1	+	3.5414511268432163	5.41366901773957	AGGCAATGTCATAGATA
chr5	44571111	44571112	chr5:44571112:G:A	rs57607823	G	A	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr5	45809704	45809705	chr5:45809705:A:T	rs112129759	A	T	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr5	49658085	49658086	chr5:49658086:A:G	rs1185527466	A	G	.	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr5	49658591	49658592	chr5:49658592:T:C	rs1241000913	T	C	.	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr5	49658596	49658597	chr5:49658597:C:G	chr5:49658597:C:G	C	G	.	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr5	50622405	50622406	chr5:50622406:T:G	rs191639757	T	G	t	Sox3.mouse_HMG_2	14	1	-	1.9787584698106229	-4.053770147778023	GATCAAAGCTCTTGAAG
chr5	50853498	50853499	chr5:50853499:G:A	rs62365519	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr5	50901160	50901161	chr5:50901161:C:T	rs72756179	C	T	C	Sox3.mouse_HMG_2	11	1	-	4.29530609340497	-0.2761780349283139	ACACAATGTAAGTGATG
chr5	50959031	50959032	chr5:50959032:T:G	rs10472047	T	G	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr5	51385197	51385198	chr5:51385198:A:G	rs3811910	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr5	52306170	52306171	chr5:52306171:C:T	rs111951010	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr5	52657486	52657487	chr5:52657487:A:G	rs35949279	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr5	52827564	52827565	chr5:52827565:C:T	rs66778208	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr5	52909959	52909960	chr5:52909960:G:C	rs3733882	G	C	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr5	53166078	53166079	chr5:53166079:G:A	rs1500366	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.29344651789821	-3.758191986288102	TCTCTATGGTATTGGAA
chr5	53439063	53439064	chr5:53439064:G:A	rs75565133	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr5	53539924	53539925	chr5:53539925:C:T	rs11743522	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr5	53560656	53560657	chr5:53560657:A:T	rs73754255	A	T	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr5	53560673	53560674	chr5:53560674:G:C	rs2279516	G	C	C	Sox3.mouse_HMG_2	1	1	+	10.954428246192865	10.245374651868381	TGTCAATGTCAGTGGTA
chr5	53560699	53560700	chr5:53560700:C:A	chr5:53560700:C:A	C	A	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr5	53838729	53838730	chr5:53838730:T:C	rs10940344	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr5	54002853	54002854	chr5:54002854:T:G	rs3776719	T	G	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr5	54172445	54172446	chr5:54172446:A:G	rs7718177	A	G	A	Sox3.mouse_HMG_2	3	1	-	3.8303413862041356	8.687197261426359	CAATAATGTCATTTATG
chr5	54220739	54220740	chr5:54220740:G:A	rs78229663	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr5	54388093	54388094	chr5:54388094:A:T	rs4865570	A	T	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr5	54454699	54454700	chr5:54454700:C:A	rs12517462	C	A	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr5	54537732	54537733	chr5:54537733:A:G	rs11744803	A	G	G	Sox3.mouse_HMG_2	4	1	+	5.165379734085496	-1.2239017002923935	TTTCAATGCTATTGCCT
chr5	54590484	54590485	chr5:54590485:G:C	rs17626648	G	C	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr5	54735382	54735383	chr5:54735383:A:G	rs12516335	A	G	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr5	54739631	54739632	chr5:54739632:C:T	rs4410612	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr5	54981826	54981827	chr5:54981827:G:A	rs11745146	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr5	55145322	55145323	chr5:55145323:C:T	rs3104237	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr5	55149668	55149669	chr5:55149669:G:A	rs28816080	G	A	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr5	55351771	55351772	chr5:55351772:A:G	rs10071980	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr5	55701502	55701503	chr5:55701503:C:G	rs3846509	C	G	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr5	55998010	55998011	chr5:55998011:C:T	rs77877240	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr5	56183644	56183645	chr5:56183645:A:C	rs6871908	A	C	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr5	56212136	56212137	chr5:56212137:C:T	rs160009	C	T	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr5	56279730	56279731	chr5:56279731:A:C	rs152318	A	C	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr5	56406632	56406633	chr5:56406633:C:T	rs286012	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr5	56984285	56984286	chr5:56984286:C:G	rs76768919	C	G	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr5	57102792	57102793	chr5:57102793:T:C	rs114819739	T	C	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr5	57175111	57175112	chr5:57175112:G:T	rs73757313	G	T	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr5	57482935	57482936	chr5:57482936:C:T	rs150881531	C	T	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr5	57503730	57503731	chr5:57503731:C:A	rs546137131	C	A	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr5	57818381	57818382	chr5:57818382:G:A	rs7723284	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	57844543	57844544	chr5:57844544:T:C	rs141265617	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr5	58019542	58019543	chr5:58019543:T:G	rs16887694	T	G	T	Sox3.mouse_HMG_2	11	1	+	5.489365490592801	4.108843313178977	GTTCAATTTTATTTTTT
chr5	58405024	58405025	chr5:58405025:C:T	rs10472060	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr5	58501921	58501922	chr5:58501922:A:G	rs77226259	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr5	58752772	58752773	chr5:58752773:G:A	rs114273017	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr5	58860862	58860863	chr5:58860863:T:C	rs9292180	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr5	58871888	58871889	chr5:58871889:A:G	rs866594407	A	G	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr5	59005264	59005265	chr5:59005265:T:A	rs79927844	T	A	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr5	59188402	59188403	chr5:59188403:C:T	rs190594545	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr5	59188450	59188451	chr5:59188451:T:C	rs114000296	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr5	59269416	59269417	chr5:59269417:A:T	rs17528522	A	T	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr5	59746050	59746051	chr5:59746051:A:C	rs7709094	A	C	A	Sox3.mouse_HMG_2	0	1	-	4.865298046924071	5.655066578702366	TCACAATGATATTGCTT
chr5	59799222	59799223	chr5:59799223:C:G	rs111672810	C	G	C	Sox3.mouse_HMG_2	9	1	+	3.872544325663577	-1.4187843913487839	GAACAGTTTCATTGACA
chr5	59943817	59943818	chr5:59943818:T:G	rs4476687	T	G	T	Sox3.mouse_HMG_2	3	1	-	3.3212531769580744	10.221923416216981	GAAAAATGGTAGTGTTT
chr5	60309147	60309148	chr5:60309148:T:A	rs16877890	T	A	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr5	60521568	60521569	chr5:60521569:T:G	rs3846460	T	G	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr5	60830474	60830475	chr5:60830475:A:T	rs72757152	A	T	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr5	60836056	60836057	chr5:60836057:T:C	rs17332108	T	C	T	Sox3.mouse_HMG_2	14	1	+	3.395274767780013	1.3821276739400135	TGTCAACGGTATTGTAT
chr5	60883473	60883474	chr5:60883474:A:G	rs6449509	A	G	g	Sox3.mouse_HMG_2	5	1	+	3.5011824392832023	-2.8880989950946865	TGTCAATTCTACTGACA
chr5	60883490	60883491	chr5:60883491:T:C	rs6449510	T	C	T	Sox3.mouse_HMG_2	0	1	+	7.991312404860748	8.476447419114857	TGTCAATGTTATAGAAA
chr5	61002532	61002533	chr5:61002533:A:G	rs290506	A	G	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr5	61399343	61399344	chr5:61399344:G:A	rs6860608	G	A	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr5	61409948	61409949	chr5:61409949:G:A	rs139439044	G	A	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr5	61661307	61661308	chr5:61661308:T:C	rs430637	T	C	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr5	61904057	61904058	chr5:61904058:C:G	rs7728712	C	G	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr5	62416528	62416529	chr5:62416529:T:C	rs247250	T	C	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr5	62477985	62477986	chr5:62477986:T:G	rs1301064	T	G	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr5	62580945	62580946	chr5:62580946:C:T	rs115682516	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr5	62714616	62714617	chr5:62714617:A:C	rs10434536	A	C	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	63155157	63155158	chr5:63155158:T:C	rs13169796	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr5	64229572	64229573	chr5:64229573:A:G	rs1020159354	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.1499638731907127	-4.239317561187175	TGTCAATGCTTTTGCTA
chr5	64998337	64998338	chr5:64998338:A:G	rs17203614	A	G	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr5	65483103	65483104	chr5:65483104:G:A	rs10514987	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr5	65811169	65811170	chr5:65811170:G:A	rs114391609	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr5	65835525	65835526	chr5:65835526:C:G	rs71632542	C	G	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr5	66441132	66441133	chr5:66441133:A:G	rs188072131	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr5	66524917	66524918	chr5:66524918:A:G	rs34567740	A	G	A	Sox3.mouse_HMG_2	11	1	-	5.486625654438776	-1.1977485450215595	ACTCAGTTTTATTGAAT
chr5	66539082	66539083	chr5:66539083:C:G	rs7708179	C	G	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr5	66701540	66701541	chr5:66701541:C:T	rs10940078	C	T	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr5	66933271	66933272	chr5:66933272:T:G	rs72763018	T	G	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr5	67020275	67020276	chr5:67020276:A:T	rs73115751	A	T	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr5	67020330	67020331	chr5:67020331:C:G	rs74811487	C	G	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr5	67063457	67063458	chr5:67063458:T:A	rs77591491	T	A	T	Sox3.mouse_HMG_2	15	1	-	13.43942281405302	15.742812507511704	GAACAATGTCATTGAAT
chr5	67095377	67095378	chr5:67095378:C:T	rs114832876	C	T	C	Sox3.mouse_HMG_2	0	1	-	5.81650341365214	4.120011119949477	GATCCATATTATTGATG
chr5	67180022	67180023	chr5:67180023:T:A	rs6890674	T	A	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr5	67193736	67193737	chr5:67193737:A:G	rs5744478	A	G	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr5	67378160	67378161	chr5:67378161:C:T	rs930083	C	T	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	67379961	67379962	chr5:67379962:G:T	rs78383519	G	T	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr5	67401180	67401181	chr5:67401181:G:A	rs114894651	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr5	67425676	67425677	chr5:67425677:A:G	rs80313247	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.108063639429319	-3.281217794948571	TATCCATGTTATTGCAA
chr5	68010925	68010926	chr5:68010926:A:G	rs13358352	A	G	G	Sox3.mouse_HMG_2	16	1	-	7.442787423676413	5.839794374015963	CCTCAATTTCAGTGGGT
chr5	68010947	68010948	chr5:68010948:G:C	rs281441	G	C	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr5	68071884	68071885	chr5:68071885:A:G	chr5:68071885:A:G	A	G	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr5	68268890	68268891	chr5:68268891:G:A	rs16897570	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr5	68268902	68268903	chr5:68268903:C:T	rs62355960	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr5	68287042	68287043	chr5:68287043:T:C	rs67913607	T	C	C	Sox3.mouse_HMG_2	4	1	-	4.018458241468681	-2.3708231929092065	CCACAATGAAAGTGATT
chr5	68287046	68287047	chr5:68287047:G:A	rs68180970	G	A	G	Sox3.mouse_HMG_2	0	1	-	4.018458241468681	3.5333232272145736	CCACAATGAAAGTGATT
chr5	68365068	68365069	chr5:68365069:C:T	rs256500	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr5	68385406	68385407	chr5:68385407:C:A	rs16897779	C	A	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr5	68418418	68418419	chr5:68418419:A:G	rs4976033	A	G	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr5	68549870	68549871	chr5:68549871:C:A	rs1344367	C	A	A	Sox3.mouse_HMG_2	1	1	-	2.2692215960641704	1.580385979030332	TGTTATTGGCAGTGATT
chr5	68672986	68672987	chr5:68672987:T:A	rs255246	T	A	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr5	68818898	68818899	chr5:68818899:G:A	rs2888407	G	A	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr5	69235865	69235866	chr5:69235866:G:A	rs2930949	G	A	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr5	72009768	72009769	chr5:72009769:A:T	rs16873990	A	T	T	Sox3.mouse_HMG_2	5	1	+	2.9670860347956785	-3.940989192997379	CAGCAATTCTATTGCAA
chr5	72037225	72037226	chr5:72037226:G:A	rs75125902	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr5	72294699	72294700	chr5:72294700:G:A	rs73127296	G	A	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr5	72602127	72602128	chr5:72602128:C:T	rs33426	C	T	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr5	72850652	72850653	chr5:72850653:A:G	rs34653	A	G	G	Sox3.mouse_HMG_2	8	1	-	6.141046797688151	4.886624831532481	CAACATTTTTAGTGATA
chr5	72850671	72850672	chr5:72850672:A:C	rs34654	A	C	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr5	72855979	72855980	chr5:72855980:G:A	rs41271135	G	A	G	Sox3.mouse_HMG_2	13	1	+	1.8815564375308524	-4.17008206665546	GGTCATTTTTAGAGATG
chr5	73103067	73103068	chr5:73103068:C:T	rs686233	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr5	73229463	73229464	chr5:73229464:T:G	rs115946512	T	G	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr5	73254565	73254566	chr5:73254566:C:T	rs7715700	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr5	73417179	73417180	chr5:73417180:A:C	rs55674522	A	C	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr5	73420697	73420698	chr5:73420698:T:A	rs2922717	T	A	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr5	73546351	73546352	chr5:73546352:A:G	rs819594	A	G	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr5	73615406	73615407	chr5:73615407:T:C	rs192905379	T	C	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr5	73760616	73760617	chr5:73760617:A:G	rs10942686	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr5	73794113	73794114	chr5:73794114:A:G	rs79395736	A	G	A	Sox3.mouse_HMG_2	1	1	+	3.2190037898680957	1.2126158478486382	AATCAAGGGCATTTATT
chr5	73867439	73867440	chr5:73867440:G:A	rs72772556	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr5	73894348	73894349	chr5:73894349:A:G	rs34729826	A	G	A	Sox3.mouse_HMG_2	1	1	+	5.206603897840603	3.2002159558211476	TATTCATGTTAGTGATA
chr5	74285922	74285923	chr5:74285923:G:C	rs62357259	G	C	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr5	74385256	74385257	chr5:74385257:T:C	rs564979	T	C	c	Sox3.mouse_HMG_2	9	1	+	5.773289429818312	5.080636886946352	TTTCCATGGTATTGAGT
chr5	74855510	74855511	chr5:74855511:G:C	rs72764687	G	C	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr5	74935048	74935049	chr5:74935049:C:T	rs80204980	C	T	C	Sox3.mouse_HMG_2	7	1	-	4.941312420039551	-1.6875090750485062	CAGAAATGGTATTGATC
chr5	75668302	75668303	chr5:75668303:C:T	rs34357	C	T	t	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr5	76086067	76086068	chr5:76086068:C:A	rs28620	C	A	a	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr5	76313167	76313168	chr5:76313168:T:C	rs2913261	T	C	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr5	76511238	76511239	chr5:76511239:G:A	rs6863053	G	A	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr5	76626755	76626756	chr5:76626756:A:G	rs2455219	A	G	G	Sox3.mouse_HMG_2	9	1	-	3.2549667743699344	2.5623142314979757	AATCAATTATTGTGGTT
chr5	76626756	76626757	chr5:76626757:T:C	rs2455220	T	C	C	Sox3.mouse_HMG_2	8	1	-	3.2549667743699344	4.473757159114433	AATCAATTATTGTGGTT
chr5	76818698	76818699	chr5:76818699:A:G	rs2242989	A	G	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr5	76831309	76831310	chr5:76831310:G:A	rs2243057	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr5	76877393	76877394	chr5:76877394:G:T	rs10070865	G	T	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr5	77064296	77064297	chr5:77064297:G:A	rs113215682	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	77383574	77383575	chr5:77383575:T:C	rs55753522	T	C	T	Sox3.mouse_HMG_2	9	1	+	2.73600303065506	2.0433504877831004	CATGAATGGTATTGCCT
chr5	77569548	77569549	chr5:77569549:C:G	rs11952265	C	G	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr5	77785842	77785843	chr5:77785843:C:T	rs11746827	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	77785854	77785855	chr5:77785855:C:T	rs254400	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr5	78144510	78144511	chr5:78144511:T:C	rs4364371	T	C	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr5	78638568	78638569	chr5:78638569:C:T	rs541169012	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr5	78638577	78638578	chr5:78638578:G:A	rs76942426	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr5	78782005	78782006	chr5:78782006:A:G	rs7721866	A	G	G	Sox3.mouse_HMG_2	4	1	+	6.612294519024659	0.22301308464677022	GATCACTGTTATTGGAA
chr5	78822242	78822243	chr5:78822243:A:C	rs10078690	A	C	A	Sox3.mouse_HMG_2	6	1	-	3.687952177971435	-3.220123049821623	GGTCAATGTTATTCCTC
chr5	78904361	78904362	chr5:78904362:C:T	rs337860	C	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr5	78958981	78958982	chr5:78958982:C:T	rs7708387	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr5	79238596	79238597	chr5:79238597:A:G	rs371761882	A	G	A	Sox3.mouse_HMG_2	15	1	-	6.952795448018037	3.1729960305122415	TCTCAATTGCATTAATA
chr5	79455873	79455874	chr5:79455874:C:T	rs28507717	C	T	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr5	79812652	79812653	chr5:79812653:T:C	rs13185886	T	C	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr5	79990595	79990596	chr5:79990596:C:T	rs61998228	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr5	80090280	80090281	chr5:80090281:T:C	rs2438644	T	C	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr5	80214537	80214538	chr5:80214538:C:T	rs150537783	C	T	C	Sox3.mouse_HMG_2	10	1	-	4.674154167856873	11.582908947172095	CCTCAATTATGGTGATA
chr5	80291293	80291294	chr5:80291294:A:G	rs28508166	A	G	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr5	80481536	80481537	chr5:80481537:C:T	rs79961273	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr5	80755003	80755004	chr5:80755004:C:T	rs6151761	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr5	80755052	80755053	chr5:80755053:C:T	rs1041721047	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr5	81019208	81019209	chr5:81019209:T:G	rs150241884	T	G	T	Sox3.mouse_HMG_2	14	1	-	7.587060064285745	1.5545314466971	GAATAATGCTATTGAGT
chr5	81525984	81525985	chr5:81525985:T:C	rs78289656	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr5	82633398	82633399	chr5:82633399:C:A	rs35748674	C	A	C	Sox3.mouse_HMG_2	1	1	+	2.7182272408884383	5.43366877723238	GCTCAATATTATTAATC
chr5	82738866	82738867	chr5:82738867:C:T	rs13176318	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr5	83098056	83098057	chr5:83098057:T:C	rs140251522	T	C	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr5	83142286	83142287	chr5:83142287:G:A	rs6868817	G	A	G	Sox3.mouse_HMG_2	7	1	+	3.0925379386520557	-3.536283556436	TTTCAGTGTTATGGATG
chr5	83267451	83267452	chr5:83267452:G:A	rs28360246	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr5	83434108	83434109	chr5:83434109:C:T	rs185356	C	T	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr5	83783342	83783343	chr5:83783343:G:A	rs34044137	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr5	83837995	83837996	chr5:83837996:T:A	rs62362771	T	A	T	Sox3.mouse_HMG_2	6	1	+	2.9860145205032538	-3.9220607072898033	CATCAATGATAGCTATA
chr5	83918824	83918825	chr5:83918825:C:A	rs4077504	C	A	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr5	83924220	83924221	chr5:83924221:C:T	rs35871321	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr5	84636150	84636151	chr5:84636151:C:T	rs58203746	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr5	84741358	84741359	chr5:84741359:T:C	rs6452578	T	C	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr5	84741383	84741384	chr5:84741384:T:A	rs6452580	T	A	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr5	84879369	84879370	chr5:84879370:T:C	rs6896185	T	C	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr5	85033825	85033826	chr5:85033826:C:T	rs79776100	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	85210822	85210823	chr5:85210823:A:G	rs78299284	A	G	.	Sox3.mouse_HMG_2	11	1	-	8.417302063450087	1.7329278639897523	TGTAAATGTTATTGATC
chr5	85210849	85210850	chr5:85210850:C:T	rs4432930	C	T	.	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr5	85938642	85938643	chr5:85938643:G:A	rs7702973	G	A	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr5	86305201	86305202	chr5:86305202:C:T	rs866506566	C	T	.	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr5	86617786	86617787	chr5:86617787:G:A	rs78937089	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr5	86682278	86682279	chr5:86682279:C:T	rs76597393	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	86878446	86878447	chr5:86878447:G:A	rs10054518	G	A	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr5	87035757	87035758	chr5:87035758:C:T	rs67560222	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr5	87413228	87413229	chr5:87413229:G:A	rs3093776	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr5	87413264	87413265	chr5:87413265:G:A	rs778520849	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr5	87674444	87674445	chr5:87674445:C:A	rs1098501	C	A	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr5	88661373	88661374	chr5:88661374:A:T	rs115138571	A	T	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr5	89232171	89232172	chr5:89232172:A:G	rs62378213	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.687796150861349	-1.9965780485989857	GGGGAATTTCATTGATT
chr5	89343806	89343807	chr5:89343807:C:T	rs151150373	C	T	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr5	89466584	89466585	chr5:89466585:T:C	rs7722399	T	C	-	Sox3.mouse_HMG_2	2	1	+	3.290899604970278	-3.075997701555464	CATGGATGTTATTGGTG
chr5	89709912	89709913	chr5:89709913:A:C	rs4254935	A	C	A	Sox3.mouse_HMG_2	6	1	-	4.627865571866147	-2.2802096559269094	GATCAATCTCAGTCATT
chr5	89722784	89722785	chr5:89722785:C:T	rs17512887	C	T	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr5	90356068	90356069	chr5:90356069:A:T	rs7349826	A	T	A	Sox3.mouse_HMG_2	2	1	-	7.990645765079453	4.708988989295916	CTTCAAATTCATTGATT
chr5	90950249	90950250	chr5:90950250:A:G	rs60553010	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr5	90968299	90968300	chr5:90968300:A:G	rs17570760	A	G	A	Sox3.mouse_HMG_2	4	1	-	2.4046769074600176	2.4046769074600176	CATATATTTCAGTGATT
chr5	91020672	91020673	chr5:91020673:T:C	rs116624629	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr5	91038663	91038664	chr5:91038664:A:G	rs147177658	A	G	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr5	91339078	91339079	chr5:91339079:A:G	rs114997094	A	G	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr5	91361525	91361526	chr5:91361526:T:G	rs147259291	T	G	T	Sox3.mouse_HMG_2	10	1	-	3.0955907254238206	-3.8131640538914	CCACAATGAGATTGAAT
chr5	91366915	91366916	chr5:91366916:C:T	rs62376561	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr5	91385131	91385132	chr5:91385132:G:A	rs7705465	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr5	91642290	91642291	chr5:91642291:A:G	rs148320994	A	G	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr5	92308208	92308209	chr5:92308209:A:C	rs4279370	A	C	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr5	92329590	92329591	chr5:92329591:A:C	rs12109676	A	C	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr5	92519660	92519661	chr5:92519661:A:T	rs10223165	A	T	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr5	92519670	92519671	chr5:92519671:A:G	rs10223166	A	G	G	Sox3.mouse_HMG_2	5	1	+	5.866279432885549	-0.5230020014923394	TTTTAATTTTATTGTTG
chr5	92527924	92527925	chr5:92527925:G:C	rs60867003	G	C	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr5	92719487	92719488	chr5:92719488:C:T	rs258952	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	93092825	93092826	chr5:93092826:G:A	rs11958890	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr5	93250239	93250240	chr5:93250240:A:G	rs115628076	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr5	93283090	93283091	chr5:93283091:A:G	rs6557075	A	G	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr5	93886471	93886472	chr5:93886472:A:G	rs896729	A	G	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr5	94661180	94661181	chr5:94661181:A:G	rs3947399	A	G	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr5	94693786	94693787	chr5:94693787:A:G	rs6869588	A	G	A	Sox3.mouse_HMG_2	1	1	+	5.088395796383975	3.082007854364517	GAACAATTTTTTTGAGA
chr5	94704435	94704436	chr5:94704436:C:T	chr5:94704436:C:T	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr5	94949889	94949890	chr5:94949890:G:A	rs159018	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr5	95062625	95062626	chr5:95062626:T:A	rs12521630	T	A	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr5	95241241	95241242	chr5:95241242:G:A	rs17349336	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr5	95486787	95486788	chr5:95486788:T:A	rs149966104	T	A	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr5	95646671	95646672	chr5:95646672:G:A	rs185090743	G	A	G	Sox3.mouse_HMG_2	1	1	+	1.1533352186312464	3.159723160650704	CGGCAATGCCATAGAGG
chr5	95646671	95646672	chr5:95646672:G:C	chr5:95646672:G:C	G	C	G	Sox3.mouse_HMG_2	1	1	+	1.1533352186312464	0.4442816243067626	CGGCAATGCCATAGAGG
chr5	95646673	95646674	chr5:95646674:C:G	rs566368392	C	G	C	Sox3.mouse_HMG_2	3	1	+	1.1533352186312464	-4.897184091258051	CGGCAATGCCATAGAGG
chr5	95646675	95646676	chr5:95646676:A:G	chr5:95646676:A:G	A	G	A	Sox3.mouse_HMG_2	5	1	+	1.1533352186312464	-5.235946215746644	CGGCAATGCCATAGAGG
chr5	95698553	95698554	chr5:95698554:C:G	rs153913	C	G	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr5	95761792	95761793	chr5:95761793:A:C	rs7717280	A	C	C	Sox3.mouse_HMG_2	10	1	+	6.977507020759391	0.06875224144416903	GAGTAATTTTATTGATC
chr5	95962750	95962751	chr5:95962751:A:C	rs79358320	A	C	A	Sox3.mouse_HMG_2	15	1	-	5.407587460930694	2.6704603162106686	GATCAATGCCAGTTTTA
chr5	96255384	96255385	chr5:96255385:G:A	rs74550156	G	A	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr5	96578096	96578097	chr5:96578097:T:C	rs261243	T	C	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr5	96653082	96653083	chr5:96653083:T:C	rs4400148	T	C	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr5	96806779	96806780	chr5:96806780:T:G	rs62376387	T	G	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	96832766	96832767	chr5:96832767:C:T	rs1000555	C	T	C	Sox3.mouse_HMG_2	3	1	+	2.787403273801818	-2.069452601420402	CTTCGATTTTATCGATG
chr5	96869195	96869196	chr5:96869196:G:C	rs10515251	G	C	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr5	96894045	96894046	chr5:96894046:G:T	rs2247650	G	T	G	Sox3.mouse_HMG_2	3	1	-	1.7280903527663816	-5.1725798864925245	GATCAATGTCTTTGCCA
chr5	97229575	97229576	chr5:97229576:G:A	rs17630655	G	A	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr5	97629740	97629741	chr5:97629741:T:C	rs72775957	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.1975037843501384	-3.1917776500277513	TATCAATGGTTGTAATA
chr5	97714656	97714657	chr5:97714657:T:A	rs2115767	T	A	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr5	97936398	97936399	chr5:97936399:T:C	rs73776246	T	C	T	Sox3.mouse_HMG_2	16	1	-	3.423120986562399	3.634695413047649	CTTCAATTCCTTTGAGA
chr5	97936400	97936401	chr5:97936401:T:G	rs17087923	T	G	T	Sox3.mouse_HMG_2	14	1	-	3.423120986562399	-2.6094076310262464	CTTCAATTCCTTTGAGA
chr5	98201254	98201255	chr5:98201255:G:T	rs114593881	G	T	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr5	98206168	98206169	chr5:98206169:T:C	rs115307902	T	C	T	Sox3.mouse_HMG_2	14	1	-	3.0379898159448553	-0.2800764538267458	CCTCACTGTTATTCATG
chr5	98231351	98231352	chr5:98231352:G:C	rs142118300	G	C	c	Sox3.mouse_HMG_2	13	1	+	5.723872470188088	-0.6633875687391244	AATTAATGGTATCGATA
chr5	98231355	98231356	chr5:98231356:T:C	rs146209901	T	C	t	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr5	98963931	98963932	chr5:98963932:A:C	rs116434398	A	C	a	Sox3.mouse_HMG_2	6	1	-	5.527516284155116	-1.3805589436379406	GAGCAATGTCAGTTATA
chr5	99178119	99178120	chr5:99178120:T:G	rs10056524	T	G	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr5	99385625	99385626	chr5:99385626:G:C	rs2461995	G	C	G	Sox3.mouse_HMG_2	8	1	+	3.9974429708915626	3.556658937740105	TATTAACTGTAGTGATG
chr5	99895157	99895158	chr5:99895158:G:C	rs113804905	G	C	G	Sox3.mouse_HMG_2	8	1	-	2.950057110722751	3.3908411438742085	AATCCTTGCTATTGATT
chr5	99950044	99950045	chr5:99950045:T:G	rs899056	T	G	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr5	100122565	100122566	chr5:100122566:T:C	rs4429827	T	C	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	100535182	100535183	chr5:100535183:C:G	rs112231673	C	G	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr5	100693515	100693516	chr5:100693516:A:T	rs2590424	A	T	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr5	100780814	100780815	chr5:100780815:G:A	rs17778598	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr5	100890825	100890826	chr5:100890826:C:T	rs74559359	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr5	100940162	100940163	chr5:100940163:C:T	rs113831677	C	T	c	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr5	101278156	101278157	chr5:101278157:G:C	rs115063285	G	C	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr5	101385432	101385433	chr5:101385433:T:C	rs977510	T	C	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr5	101531350	101531351	chr5:101531351:G:A	rs350535	G	A	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr5	102346679	102346680	chr5:102346680:T:C	rs1584716	T	C	T	Sox3.mouse_HMG_2	4	1	-	3.6277241398192266	-2.761557294558662	ACACAATTGCAGTGTTG
chr5	102407998	102407999	chr5:102407999:T:C	rs1376899	T	C	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr5	102584150	102584151	chr5:102584151:T:C	rs72781841	T	C	T	Sox3.mouse_HMG_2	10	1	-	5.0483441445944885	-1.860410634720732	CATCCATTCCATTGTTG
chr5	102617411	102617412	chr5:102617412:C:T	rs10067699	C	T	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr5	102747716	102747717	chr5:102747717:T:C	rs419199	T	C	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr5	102947174	102947175	chr5:102947175:C:T	rs566135144	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr5	103563122	103563123	chr5:103563123:T:C	rs368798432	T	C	T	Sox3.mouse_HMG_2	4	1	-	5.448557293508442	-0.9407241408694467	ACTCAATTGCATTGGAC
chr5	103600730	103600731	chr5:103600731:C:T	rs952497	C	T	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr5	103680072	103680073	chr5:103680073:G:T	rs1152169	G	T	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr5	103755739	103755740	chr5:103755740:T:C	rs10079375	T	C	.	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr5	104147499	104147500	chr5:104147500:A:G	rs139938108	A	G	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr5	104265540	104265541	chr5:104265541:A:G	rs114044436	A	G	A	Sox3.mouse_HMG_2	1	1	-	4.429084134336453	4.408866157045809	ATTCAAGGATAGTGATA
chr5	104361501	104361502	chr5:104361502:A:C	rs112536801	A	C	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr5	104444876	104444877	chr5:104444877:T:C	rs17405024	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.115888982942096	-2.2733924514357953	GATTGATGTTATTGACA
chr5	105155185	105155186	chr5:105155186:C:T	rs10043572	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr5	105448700	105448701	chr5:105448701:T:C	rs10073707	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr5	105647496	105647497	chr5:105647497:T:C	rs4286642	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr5	105764938	105764939	chr5:105764939:T:C	rs10463571	T	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr5	105947049	105947050	chr5:105947050:G:A	rs1524355	G	A	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr5	105956960	105956961	chr5:105956961:C:T	chr5:105956961:C:T	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr5	106481692	106481693	chr5:106481693:G:A	rs191155580	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr5	106543861	106543862	chr5:106543862:C:T	rs6864980	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr5	106646355	106646356	chr5:106646356:C:T	rs28510213	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr5	106660511	106660512	chr5:106660512:C:A	rs10063212	C	A	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr5	107172756	107172757	chr5:107172757:G:C	rs12516271	G	C	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr5	107264513	107264514	chr5:107264514:G:A	rs34566	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr5	107358318	107358319	chr5:107358319:C:T	rs35563722	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr5	107362149	107362150	chr5:107362150:A:G	rs10447299	A	G	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr5	107399788	107399789	chr5:107399789:A:G	rs252812	A	G	G	Sox3.mouse_HMG_2	15	1	-	2.3914303270014123	-1.3883690905043835	GTTCTATGGTTTTGATT
chr5	107543362	107543363	chr5:107543363:C:T	rs6884705	C	T	C	Sox3.mouse_HMG_2	15	1	+	3.598213977052477	7.378013394558272	TTTCAATTTAAGTGACG
chr5	107660329	107660330	chr5:107660330:A:G	chr5:107660330:A:G	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr5	107704740	107704741	chr5:107704741:C:T	rs12654281	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr5	107724698	107724699	chr5:107724699:C:T	rs56159505	C	T	-	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr5	107782291	107782292	chr5:107782292:A:G	rs12520844	A	G	A	Sox3.mouse_HMG_2	0	1	-	2.810744240957223	3.295879255211332	TCTCAATGTCAATGTGT
chr5	107794840	107794841	chr5:107794841:T:A	rs62355926	T	A	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr5	107982752	107982753	chr5:107982753:C:T	rs288194	C	T	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr5	108101323	108101324	chr5:108101324:C:A	rs10079990	C	A	C	Sox3.mouse_HMG_2	8	1	+	3.5071242288164766	2.729117877223437	GAACAATGCCATGGTTA
chr5	108508886	108508887	chr5:108508887:C:A	rs13188482	C	A	A	Sox3.mouse_HMG_2	9	1	+	4.960165928649975	-0.3311627883623857	GAATAATGACATTGGTA
chr5	108863397	108863398	chr5:108863398:C:T	rs770511444	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr5	108872961	108872962	chr5:108872962:A:G	rs78224142	A	G	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr5	109368257	109368258	chr5:109368258:A:G	rs3805438	A	G	A	Sox3.mouse_HMG_2	1	1	+	3.8498193877449745	1.843431445725516	GAGCAATGACAGTGCTA
chr5	109401716	109401717	chr5:109401717:T:C	rs76807178	T	C	C	Sox3.mouse_HMG_2	5	1	-	3.759214984237667	-2.6300664501402227	CTTCAATTCTACTGGTA
chr5	109550365	109550366	chr5:109550366:T:C	rs76984613	T	C	T	Sox3.mouse_HMG_2	4	1	-	3.8690648327151043	-2.5202166016627836	ATTAAATTTCATTGAGT
chr5	109617800	109617801	chr5:109617801:A:C	rs11743954	A	C	A	Sox3.mouse_HMG_2	8	1	-	4.766439515512355	3.952801582508142	GTTCGATTTCAGTGAAG
chr5	109668858	109668859	chr5:109668859:G:T	rs142109310	G	T	G	Sox3.mouse_HMG_2	13	1	+	4.071315639449161	-2.315944399478051	TAACAATGTTAATGTTC
chr5	109707527	109707528	chr5:109707528:C:T	rs12656748	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr5	109759629	109759630	chr5:109759630:G:A	rs75148706	G	A	G	Sox3.mouse_HMG_2	3	1	-	3.88995355084054	-0.9669023243816828	CAGCAATTCTAGTGCTA
chr5	109986671	109986672	chr5:109986672:T:C	rs36803	T	C	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr5	110034716	110034717	chr5:110034717:T:C	rs11241043	T	C	T	Sox3.mouse_HMG_2	12	1	+	2.911070988068998	-3.1398961498618188	CTGCAAGGTTAGTGATG
chr5	110738537	110738538	chr5:110738538:A:C	rs72773192	A	C	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr5	110738540	110738541	chr5:110738541:T:G	rs376247108	T	G	T	Sox3.mouse_HMG_2	16	1	-	7.116310157534007	6.088613223992752	GATCAAATCTATTGAGA
chr5	110739712	110739713	chr5:110739713:C:A	rs665063	C	A	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr5	111433352	111433353	chr5:111433353:G:C	rs76018676	G	C	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr5	111511332	111511333	chr5:111511333:A:G	rs152877	A	G	A	Sox3.mouse_HMG_2	12	1	-	6.525281653337789	0.4743145154069713	AATAAATGTTATTGTTA
chr5	111511337	111511338	chr5:111511338:C:T	rs138664285	C	T	C	Sox3.mouse_HMG_2	7	1	-	6.525281653337789	-0.10353984175026883	AATAAATGTTATTGTTA
chr5	111658207	111658208	chr5:111658208:T:C	rs1904154	T	C	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	111722146	111722147	chr5:111722147:A:C	rs17842605	A	C	A	Sox3.mouse_HMG_2	2	1	-	3.5089638228742355	-1.644910843805656	AATCAATGACAGAGACA
chr5	111762994	111762995	chr5:111762995:G:A	rs369811181	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr5	111763025	111763026	chr5:111763026:A:G	rs79232110	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	111893022	111893023	chr5:111893023:A:G	rs115380464	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr5	111916397	111916398	chr5:111916398:A:G	rs1493457	A	G	A	Sox3.mouse_HMG_2	9	1	-	3.3389340053232273	2.6462814624512676	TGTCAGTGATAGTGACT
chr5	111948539	111948540	chr5:111948540:T:C	rs74863307	T	C	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr5	112167008	112167009	chr5:112167009:T:C	rs6872947	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr5	112175237	112175238	chr5:112175238:C:T	rs777238202	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr5	112386916	112386917	chr5:112386917:T:A	rs151206467	T	A	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr5	112386944	112386945	chr5:112386945:C:G	rs17134454	C	G	G	Sox3.mouse_HMG_2	7	1	-	3.7724271428992746	-2.8563943521887825	GAACACTGTCAGTGGTG
chr5	112417645	112417646	chr5:112417646:G:C	rs712675	G	C	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr5	112717592	112717593	chr5:112717593:G:A	rs56700193	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr5	112717612	112717613	chr5:112717613:G:A	rs184735912	G	A	G	Sox3.mouse_HMG_2	15	1	+	6.011631246703328	6.445368697964669	TTTCATTGTTATTGAGA
chr5	112779944	112779945	chr5:112779945:A:G	rs77939389	A	G	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr5	112831889	112831890	chr5:112831890:T:C	rs548710	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr5	112870019	112870020	chr5:112870020:T:C	rs79735802	T	C	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	112884915	112884916	chr5:112884916:A:T	rs818428	A	T	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr5	112910755	112910756	chr5:112910756:C:A	rs17135168	C	A	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr5	112923705	112923706	chr5:112923706:G:A	rs6860019	G	A	G	Sox3.mouse_HMG_2	11	1	+	3.292057317894028	-1.279426810439257	CTTCTATTTCAGTGGTT
chr5	112958776	112958777	chr5:112958777:G:A	rs469675	G	A	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr5	112983414	112983415	chr5:112983415:T:A	rs33549	T	A	t	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr5	113000579	113000580	chr5:113000580:A:T	rs34291626	A	T	A	Sox3.mouse_HMG_2	6	1	-	3.880085864067923	-3.0279893637251316	TAATAATGTTTTTGATT
chr5	113020951	113020952	chr5:113020952:G:A	rs7670	G	A	g	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr5	113098768	113098769	chr5:113098769:G:A	rs3890775	G	A	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr5	113177347	113177348	chr5:113177348:T:C	rs17135393	T	C	C	Sox3.mouse_HMG_2	0	1	-	4.227077850355397	5.9235701440580595	AGTCAATGTTAGTCTTT
chr5	113203395	113203396	chr5:113203396:T:C	rs57948635	T	C	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr5	113203431	113203432	chr5:113203432:G:A	rs10478114	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr5	113203432	113203433	chr5:113203433:T:C	rs57602920	T	C	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr5	113372091	113372092	chr5:113372092:C:T	rs12516418	C	T	C	Sox3.mouse_HMG_2	3	1	+	7.860412625197788	3.0035567499755653	GAACAATTTCATTGTGT
chr5	113645830	113645831	chr5:113645831:C:A	rs12189067	C	A	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr5	113738852	113738853	chr5:113738853:C:T	rs73250331	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr5	113813913	113813914	chr5:113813914:C:T	rs12520281	C	T	C	Sox3.mouse_HMG_2	13	1	-	5.601554376345718	-0.4500841278405932	AATCAATGGAATTGGAT
chr5	114008880	114008881	chr5:114008881:A:T	rs10463654	A	T	A	Sox3.mouse_HMG_2	14	1	+	1.3748455430936501	-2.644535980654995	CATCTGTGTCAGTGAAG
chr5	114360312	114360313	chr5:114360313:G:T	rs36944	G	T	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr5	114794002	114794003	chr5:114794003:A:G	rs493923	A	G	A	Sox3.mouse_HMG_2	14	1	+	2.223672331418478	-1.0943939383531227	CCTCAATGGTTTTTATG
chr5	115474070	115474071	chr5:115474071:G:A	rs257059	G	A	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr5	115492053	115492054	chr5:115492054:T:C	rs10463671	T	C	T	Sox3.mouse_HMG_2	10	1	-	6.530937844561747	-0.3778169347534737	AGACAATTTCATTGTTG
chr5	115501869	115501870	chr5:115501870:G:A	rs181598906	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr5	115636240	115636241	chr5:115636241:G:A	rs256953	G	A	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr5	115661792	115661793	chr5:115661793:G:A	rs73782741	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr5	115938538	115938539	chr5:115938539:T:C	rs17138436	T	C	T	Sox3.mouse_HMG_2	1	1	-	2.12492926872774	0.11854132670828259	AATCAAATGTACTGATG
chr5	116035347	116035348	chr5:116035348:C:G	rs139209841	C	G	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr5	116256884	116256885	chr5:116256885:C:T	rs10073364	C	T	C	Sox3.mouse_HMG_2	2	1	-	3.7387696044053853	5.61098749530174	CAGGAATGACAGTGATG
chr5	116611427	116611428	chr5:116611428:A:G	rs12521940	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	116626599	116626600	chr5:116626600:A:C	chr5:116626600:A:C	A	C	A	Sox3.mouse_HMG_2	12	1	-	1.5326422431235442	-4.853946429548171	CATCAGTGGAAGTGAGA
chr5	116626615	116626616	chr5:116626616:C:G	rs116589625	C	G	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr5	116766535	116766536	chr5:116766536:C:T	rs7720789	C	T	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr5	116835217	116835218	chr5:116835218:T:C	rs26665	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr5	116860333	116860334	chr5:116860334:T:C	rs10043907	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr5	117244698	117244699	chr5:117244699:A:G	rs73783751	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr5	117473627	117473628	chr5:117473628:C:A	rs2162748	C	A	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	117953736	117953737	chr5:117953737:G:C	rs10070124	G	C	G	Sox3.mouse_HMG_2	8	1	+	4.25175747829752	3.8109734451460615	GTTCAATGGCTTTGACA
chr5	118235203	118235204	chr5:118235204:C:T	rs11742447	C	T	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr5	118381824	118381825	chr5:118381825:C:G	rs11958566	C	G	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr5	118390959	118390960	chr5:118390960:A:G	rs78999039	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.238612064025863	-2.1506693703520265	GATCAATTGAAATGATC
chr5	118392947	118392948	chr5:118392948:T:G	rs7721374	T	G	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr5	118530070	118530071	chr5:118530071:T:C	rs10478395	T	C	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr5	118679157	118679158	chr5:118679158:G:T	rs13184812	G	T	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr5	119288494	119288495	chr5:119288495:G:A	rs905831	G	A	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	119625678	119625679	chr5:119625679:G:A	rs2561513	G	A	G	Sox3.mouse_HMG_2	13	1	+	8.087636607407573	2.035998103221261	CATCAATGTTAGCGGTA
chr5	119680857	119680858	chr5:119680858:A:T	rs61744859	A	T	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr5	119681212	119681213	chr5:119681213:T:C	rs874886	T	C	T	Sox3.mouse_HMG_2	1	1	-	7.760070079604141	5.753682137584683	TATCATTGTTAGTGAAA
chr5	119741091	119741092	chr5:119741092:C:A	rs114201422	C	A	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr5	119975076	119975077	chr5:119975077:G:A	rs58296627	G	A	G	Sox3.mouse_HMG_2	9	1	-	5.4632846898016965	6.155937232673656	TGACAAGGTCATTGATA
chr5	119987128	119987129	chr5:119987129:G:A	rs4540207	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr5	120139209	120139210	chr5:120139210:C:T	rs79866854	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr5	120227128	120227129	chr5:120227129:C:T	rs12719272	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr5	120396166	120396167	chr5:120396167:T:C	rs1368190	T	C	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr5	120442636	120442637	chr5:120442637:G:A	rs17146602	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr5	120765998	120765999	chr5:120765999:C:T	rs1584469	C	T	C	Sox3.mouse_HMG_2	8	1	+	3.5464086425605013	4.80083060871617	TATCCATTCCAGTGTTT
chr5	120766011	120766012	chr5:120766012:G:A	rs11749221	G	A	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr5	120872469	120872470	chr5:120872470:C:T	rs9327170	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr5	120872496	120872497	chr5:120872497:A:G	rs6878559	A	G	G	Sox3.mouse_HMG_2	6	1	-	5.210474357813091	-1.178807076564799	GAACAATGTCAGAGAGG
chr5	120878094	120878095	chr5:120878095:T:C	rs28407265	T	C	T	Sox3.mouse_HMG_2	14	1	-	4.956110739354209	1.6380444695826077	CATTGATGCTAGTGATA
chr5	120891932	120891933	chr5:120891933:T:C	rs75135235	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.766201170463451	-3.623080263914438	CCCCAATGGTATGGATG
chr5	121019183	121019184	chr5:121019184:T:C	rs2973179	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr5	121350822	121350823	chr5:121350823:T:C	rs10073882	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.609987553452493	-1.7792938809253962	GATTAATTTTATTTAGT
chr5	121402489	121402490	chr5:121402490:T:C	rs711416	T	C	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr5	121433312	121433313	chr5:121433313:C:T	rs13181819	C	T	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr5	121623830	121623831	chr5:121623831:C:T	rs13154018	C	T	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr5	121819825	121819826	chr5:121819826:G:T	rs7736854	G	T	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr5	122190391	122190392	chr5:122190392:C:A	rs144914388	C	A	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr5	122907028	122907029	chr5:122907029:C:T	rs112801206	C	T	C	Sox3.mouse_HMG_2	1	1	-	7.323591858059182	9.329979800078643	AGTCAATGTTATTCAAT
chr5	122907036	122907037	chr5:122907037:G:T	rs34844238	G	T	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr5	123125372	123125373	chr5:123125373:C:T	rs335157	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr5	123199837	123199838	chr5:123199838:G:A	rs804722	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr5	123304241	123304242	chr5:123304242:G:A	rs6595437	G	A	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr5	123422472	123422473	chr5:123422473:A:T	rs62377766	A	T	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr5	123756026	123756027	chr5:123756027:G:A	rs67313646	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr5	124154931	124154932	chr5:124154932:C:T	rs12108901	C	T	C	Sox3.mouse_HMG_2	8	1	-	9.5603485445749	8.341558159830404	TCTCAATTGCATTGTTT
chr5	124154934	124154935	chr5:124154935:T:G	rs1457687	T	G	g	Sox3.mouse_HMG_2	5	1	-	9.5603485445749	2.6522733167818435	TCTCAATTGCATTGTTT
chr5	124172839	124172840	chr5:124172840:T:C	rs74323401	T	C	T	Sox3.mouse_HMG_2	4	1	-	6.811676640009817	0.4223952056319263	CATCATTTCTATTGAGA
chr5	124376508	124376509	chr5:124376509:G:C	rs11241737	G	C	C	Sox3.mouse_HMG_2	1	1	-	4.095480936318664	4.804534530643146	TCGCAATGTTATTTATA
chr5	124552512	124552513	chr5:124552513:A:G	rs13181595	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr5	124721247	124721248	chr5:124721248:G:A	rs7727239	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr5	124839479	124839480	chr5:124839480:A:G	rs75439582	A	G	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr5	124949595	124949596	chr5:124949596:A:G	rs2028855	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr5	125255338	125255339	chr5:125255339:C:G	rs12522773	C	G	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr5	125268162	125268163	chr5:125268163:A:T	rs17152529	A	T	A	Sox3.mouse_HMG_2	8	1	-	8.342400863396943	6.3099725456482325	TCTCAATTTCATCGATT
chr5	125295227	125295228	chr5:125295228:A:G	rs11747033	A	G	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr5	125311846	125311847	chr5:125311847:A:T	rs1550371	A	T	T	Sox3.mouse_HMG_2	6	1	-	3.8313158168554273	-3.07675941093763	ATTCCATGTCATTGGTA
chr5	125317190	125317191	chr5:125317191:C:T	rs17463085	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr5	125326160	125326161	chr5:125326161:A:G	rs146365504	A	G	A	Sox3.mouse_HMG_2	10	1	+	3.660093305455155	-3.2486614738600665	TAACAATTTCATTCACT
chr5	125599247	125599248	chr5:125599248:G:A	rs536866736	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr5	125979592	125979593	chr5:125979593:T:A	rs444610	T	A	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr5	126353271	126353272	chr5:126353272:G:A	rs77820934	G	A	g	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr5	126374216	126374217	chr5:126374217:T:C	rs10078989	T	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr5	126433206	126433207	chr5:126433207:G:A	rs34781836	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr5	126462580	126462581	chr5:126462581:A:G	rs6862440	A	G	A	Sox3.mouse_HMG_2	15	1	-	8.602881276693479	4.823081859187683	GTTCAATGATATGGATT
chr5	126554866	126554867	chr5:126554867:C:T	rs12513847	C	T	t	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	126596735	126596736	chr5:126596736:C:T	rs186759885	C	T	C	Sox3.mouse_HMG_2	3	1	+	4.602563251207563	-0.2542926240146602	GATCAATTTCTTTCATT
chr5	126868935	126868936	chr5:126868936:A:G	rs56163512	A	G	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr5	126868974	126868975	chr5:126868975:C:A	rs79665108	C	A	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr5	126939897	126939898	chr5:126939898:C:T	rs10900789	C	T	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr5	127193156	127193157	chr5:127193157:G:T	rs193712	G	T	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr5	127393004	127393005	chr5:127393005:G:T	rs1529467	G	T	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr5	127813469	127813470	chr5:127813470:T:A	rs790476	T	A	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr5	127888740	127888741	chr5:127888741:C:T	rs245172	C	T	c	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr5	128062386	128062387	chr5:128062387:C:G	rs755090899	C	G	C	Sox3.mouse_HMG_2	7	1	-	5.8082600870882395	-0.8205614079998167	GTTCAACGGCATTGGTT
chr5	128085547	128085548	chr5:128085548:A:G	rs770750751	A	G	A	Sox3.mouse_HMG_2	5	1	+	5.625490001032965	-0.7637914333449265	GTTCAATGTCACTGTTT
chr5	128144207	128144208	chr5:128144208:T:C	rs3792866	T	C	C	Sox3.mouse_HMG_2	8	1	+	2.7618829467756187	1.5074609806199497	TATCAAGTTTAGTTATG
chr5	128499618	128499619	chr5:128499619:C:T	rs4836376	C	T	T	Sox3.mouse_HMG_2	8	1	-	3.0892244898992853	1.8704341051547893	TGTCAACAGTATTGATT
chr5	128597263	128597264	chr5:128597264:A:C	rs34912177	A	C	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr5	128762474	128762475	chr5:128762475:G:A	rs6595859	G	A	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr5	128829724	128829725	chr5:128829725:T:C	rs58910556	T	C	C	Sox3.mouse_HMG_2	4	1	-	3.79627614295093	-2.593005291426959	CCTCAGTTTCAGTGAGA
chr5	129547220	129547221	chr5:129547221:A:G	rs1363148	A	G	G	Sox3.mouse_HMG_2	12	1	-	2.6793956589234815	-3.3715714790073346	TTTCAAGGTCAATGATT
chr5	129615734	129615735	chr5:129615735:T:C	rs1946290	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr5	130476286	130476287	chr5:130476287:C:T	rs62391343	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr5	131276006	131276007	chr5:131276007:A:T	rs1468328	A	T	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr5	131583451	131583452	chr5:131583452:G:C	chr5:131583452:G:C	G	C	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr5	131654690	131654691	chr5:131654691:T:C	rs26003	T	C	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr5	132862506	132862507	chr5:132862507:G:A	rs254286	G	A	G	Sox3.mouse_HMG_2	7	1	+	2.0230965284977187	-4.605724966590338	GTTCAACGGTAGTAATG
chr5	133055059	133055060	chr5:133055060:G:T	rs6874265	G	T	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	133106570	133106571	chr5:133106571:T:C	rs56083805	T	C	t	Sox3.mouse_HMG_2	4	1	-	5.522812799167479	-0.8664686352104116	GAACATTTTTATTGAAA
chr5	133203790	133203791	chr5:133203791:T:C	rs4533941	T	C	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr5	133234740	133234741	chr5:133234741:C:G	rs78406411	C	G	C	Sox3.mouse_HMG_2	0	1	-	1.1374324256778343	0.8327989081536464	GGTCAATGGCAGAGCTC
chr5	133371997	133371998	chr5:133371998:G:A	rs62375990	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr5	133423631	133423632	chr5:133423632:C:T	rs29545	C	T	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr5	133429264	133429265	chr5:133429265:C:T	rs72787310	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr5	133449884	133449885	chr5:133449885:T:C	rs25872	T	C	T	Sox3.mouse_HMG_2	10	1	-	11.285841508235471	4.377086728920249	GATCAATTCTATAGATT
chr5	133675570	133675571	chr5:133675571:T:C	rs10479055	T	C	T	Sox3.mouse_HMG_2	15	1	+	2.7549114333551397	-1.024887984150656	TGTCAACGTTAGTGCTG
chr5	133738989	133738990	chr5:133738990:A:T	rs55810542	A	T	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr5	133980017	133980018	chr5:133980018:G:T	rs28517596	G	T	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr5	134087082	134087083	chr5:134087083:A:G	rs562389825	A	G	A	Sox3.mouse_HMG_2	12	1	-	1.241832733166619	-4.809134404764198	GTTCAAAGGCAGTGGAG
chr5	134175570	134175571	chr5:134175571:T:C	rs73791516	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.404488768497389	-1.9847926658805022	AATCAACTGCATTGTTA
chr5	134276115	134276116	chr5:134276116:C:G	rs326626	C	G	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr5	134284512	134284513	chr5:134284513:T:C	rs326610	T	C	T	Sox3.mouse_HMG_2	11	1	+	4.366301126968015	-2.31807307249232	ACACAGTGTCATTGATA
chr5	134466730	134466731	chr5:134466731:C:T	rs6883426	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr5	134466751	134466752	chr5:134466752:A:G	rs112862029	A	G	A	Sox3.mouse_HMG_2	12	1	-	3.1917301316168505	-2.8592370063139665	GATCAATGACAGTTCTT
chr5	134832134	134832135	chr5:134832135:G:A	rs113436796	G	A	g	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr5	134925139	134925140	chr5:134925140:G:A	rs5013057	G	A	-	Sox3.mouse_HMG_2	13	1	+	8.067873479633537	2.016234975447225	CGTTAATGTTAGTGAGG
chr5	134965319	134965320	chr5:134965320:A:T	rs62380036	A	T	a	Sox3.mouse_HMG_2	5	1	+	2.7374735924611455	-4.170601635331911	TTTCAATGCCAGTTACT
chr5	135067538	135067539	chr5:135067539:T:C	rs7737968	T	C	C	Sox3.mouse_HMG_2	4	1	-	8.579874855835552	2.1905934214576592	CTGCAATGTTAGTGATC
chr5	135188046	135188047	chr5:135188047:C:A	rs78893150	C	A	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr5	135243610	135243611	chr5:135243611:C:T	rs137996513	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr5	135436255	135436256	chr5:135436256:C:T	rs543154733	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr5	135454898	135454899	chr5:135454899:G:A	rs6866573	G	A	G	Sox3.mouse_HMG_2	14	1	-	2.508712245216858	4.521859339056858	CTTCATTGTCATTGCTA
chr5	135512793	135512794	chr5:135512794:T:C	rs185786819	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr5	135633271	135633272	chr5:135633272:G:C	rs31263	G	C	G	Sox3.mouse_HMG_2	9	1	-	4.427827438474062	-0.8635012785382971	TAGCAATGTCTGTGATG
chr5	135636474	135636475	chr5:135636475:G:A	rs112800818	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr5	135693704	135693705	chr5:135693705:T:C	rs4246783	T	C	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	135868996	135868997	chr5:135868997:C:T	rs4246806	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr5	135879369	135879370	chr5:135879370:C:T	rs6869653	C	T	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr5	136135949	136135950	chr5:136135950:C:A	rs11959595	C	A	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr5	136135961	136135962	chr5:136135962:G:A	rs11959648	G	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr5	136265565	136265566	chr5:136265566:C:T	rs141653373	C	T	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr5	136353747	136353748	chr5:136353748:C:T	rs2673931	C	T	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr5	136605972	136605973	chr5:136605973:G:A	rs35755198	G	A	G	Sox3.mouse_HMG_2	0	1	+	2.1272309301968435	0.4307386364941799	GGTCAGTGCAAGTGATA
chr5	136963070	136963071	chr5:136963071:T:C	rs115348008	T	C	T	Sox3.mouse_HMG_2	11	1	+	4.110810072024142	-2.5735641274361942	CTTCATTTCTATTGGTT
chr5	137095471	137095472	chr5:137095472:G:T	rs12332664	G	T	T	Sox3.mouse_HMG_2	3	1	-	2.6289835123721943	-4.271686726886713	CATCAATGACAGAAATA
chr5	137128121	137128122	chr5:137128122:A:G	rs2905975	A	G	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	137273912	137273913	chr5:137273913:T:C	rs17171273	T	C	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr5	137288092	137288093	chr5:137288093:T:C	rs2905558	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr5	137288106	137288107	chr5:137288107:T:C	rs79147742	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.618822032561299	-1.7704594018165913	CATCAATGCTCTTGGGA
chr5	137376386	137376387	chr5:137376387:T:C	rs1881619	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr5	137395124	137395125	chr5:137395125:T:C	chr5:137395125:T:C	T	C	T	Sox3.mouse_HMG_2	10	1	-	3.14656137829364	-3.7621934010215807	GGACCATGTCATTGGTG
chr5	137510018	137510019	chr5:137510019:C:T	rs6879168	C	T	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr5	138101535	138101536	chr5:138101536:A:G	rs4835767	A	G	A	Sox3.mouse_HMG_2	15	1	-	11.626431952241703	7.846632534735907	CAGCAATTGCATTGATT
chr5	138300257	138300258	chr5:138300258:C:T	rs75792163	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr5	138629619	138629620	chr5:138629620:C:T	rs6596445	C	T	t	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr5	139815574	139815575	chr5:139815575:T:C	rs17118443	T	C	C	Sox3.mouse_HMG_2	2	1	+	5.638449622298881	-0.7284476842268622	TGTCAAGGTCATTGGTG
chr5	140073307	140073308	chr5:140073308:G:A	rs187178000	G	A	G	Sox3.mouse_HMG_2	9	1	-	3.671635974545178	4.364288517417138	AATCTATTTCATTGTTC
chr5	140238499	140238500	chr5:140238500:C:T	rs2009997	C	T	c	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr5	140565134	140565135	chr5:140565135:C:G	rs114317763	C	G	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	140604115	140604116	chr5:140604116:T:C	rs778606	T	C	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr5	141475628	141475629	chr5:141475629:C:T	rs77593456	C	T	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr5	141478677	141478678	chr5:141478678:C:T	rs3805695	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr5	141490031	141490032	chr5:141490032:C:T	rs2233602	C	T	C	Sox3.mouse_HMG_2	13	1	-	8.720701081559167	2.6690625773728547	GATCAGTGGCATTGAGG
chr5	141826276	141826277	chr5:141826277:G:C	rs72794063	G	C	G	Sox3.mouse_HMG_2	13	1	-	5.5344376956859485	11.921697734613161	GTACAATTTCATTCATT
chr5	141826295	141826296	chr5:141826296:C:T	rs17705472	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr5	141870936	141870937	chr5:141870937:T:G	rs79970685	T	G	T	Sox3.mouse_HMG_2	4	1	-	3.1464244553987037	-3.761650772394352	CCTCAGTGGGATTGATG
chr5	142016759	142016760	chr5:142016760:T:A	rs73792251	T	A	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr5	142057090	142057091	chr5:142057091:G:C	rs34143804	G	C	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr5	142063804	142063805	chr5:142063805:G:T	rs146473853	G	T	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr5	142277679	142277680	chr5:142277680:A:G	rs10059748	A	G	a	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr5	142322724	142322725	chr5:142322725:C:T	rs1176269291	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr5	142471756	142471757	chr5:142471757:A:T	rs78864562	A	T	A	Sox3.mouse_HMG_2	2	1	-	4.295397295442294	1.0137405196587579	ATTCAAATTCATTGAAT
chr5	142512226	142512227	chr5:142512227:C:T	rs249737	C	T	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr5	142568256	142568257	chr5:142568257:T:C	rs33984	T	C	C	Sox3.mouse_HMG_2	6	1	+	3.2982192286562104	-3.09106220572168	AACCAATTCTAGTGTTA
chr5	142693239	142693240	chr5:142693240:C:T	rs11949820	C	T	c	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr5	143121187	143121188	chr5:143121188:G:A	rs41290619	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr5	143125838	143125839	chr5:143125839:G:A	rs181771	G	A	A	Sox3.mouse_HMG_2	3	1	-	5.695301528121215	0.8384456528989912	TATCAATTTTATAGGGT
chr5	143167595	143167596	chr5:143167596:A:T	rs986564	A	T	A	Sox3.mouse_HMG_2	8	1	+	4.420338073648265	6.452766391396974	CATCAATGATGTAGATT
chr5	143169254	143169255	chr5:143169255:C:A	rs853167	C	A	A	Sox3.mouse_HMG_2	0	1	+	2.796385825178301	1.4045270489998252	CATCAGTGTTCTTGGTT
chr5	143230355	143230356	chr5:143230356:G:T	rs199817482	G	T	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr5	143437069	143437070	chr5:143437070:G:C	rs61757416	G	C	G	Sox3.mouse_HMG_2	15	1	+	4.978669679500204	3.935997406714434	CCTCACTGTCAGTGAGT
chr5	143471822	143471823	chr5:143471823:C:T	rs75508794	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr5	143496911	143496912	chr5:143496912:G:A	rs2028833	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr5	143645946	143645947	chr5:143645947:T:A	rs10068655	T	A	A	Sox3.mouse_HMG_2	8	1	+	5.159635871590001	3.1272075538412927	TCTCAATGTTCTTGACG
chr5	143759574	143759575	chr5:143759575:G:A	rs568800324	G	A	G	Sox3.mouse_HMG_2	14	1	+	2.435365082517194	5.753431352288795	CATCTATGTTATTTGTG
chr5	144134454	144134455	chr5:144134455:A:T	rs145918900	A	T	A	Sox3.mouse_HMG_2	12	1	-	4.4772873610190125	-1.5736797769118045	GAACAATGCTACTGTTT
chr5	144208288	144208289	chr5:144208289:G:A	rs146717397	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr5	145237875	145237876	chr5:145237876:G:A	rs71592980	G	A	G	Sox3.mouse_HMG_2	13	1	+	3.0340852006490655	-3.017553303537246	GGTCAGTGTTACTGATC
chr5	145239608	145239609	chr5:145239609:G:A	rs17096542	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr5	145830634	145830635	chr5:145830635:C:T	rs620323	C	T	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr5	146025866	146025867	chr5:146025867:A:G	rs248776	A	G	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr5	146098218	146098219	chr5:146098219:T:C	rs149393265	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.507618461913743	-2.881662972464147	GGACAATTGCTGTGATT
chr5	146126536	146126537	chr5:146126537:G:A	rs11540216	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr5	146409695	146409696	chr5:146409696:T:C	rs6868716	T	C	C	Sox3.mouse_HMG_2	8	1	-	3.981870022705267	5.200660407449764	TATCAATTATAGTCTTT
chr5	146445239	146445240	chr5:146445240:G:A	rs6871681	G	A	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	146542706	146542707	chr5:146542707:T:C	rs75656298	T	C	T	Sox3.mouse_HMG_2	2	1	-	4.406395702027832	2.5341778111314794	GGACAATGATATTTATC
chr5	146568917	146568918	chr5:146568918:C:T	rs952896	C	T	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr5	146699430	146699431	chr5:146699431:C:T	rs141492627	C	T	T	Sox3.mouse_HMG_2	11	1	-	5.9459357385658755	1.3744516102325897	AATAAATGTCAGTGAGG
chr5	147482665	147482666	chr5:147482666:A:C	rs958677	A	C	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr5	147532543	147532544	chr5:147532544:T:C	rs7716144	T	C	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr5	147643279	147643280	chr5:147643280:T:A	rs9918176	T	A	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr5	147682815	147682816	chr5:147682816:T:G	rs2288829	T	G	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr5	147780867	147780868	chr5:147780868:G:A	rs12655202	G	A	G	Sox3.mouse_HMG_2	13	1	+	7.012202618969358	0.9605641147830453	TGACAATGATATTGTTA
chr5	147857650	147857651	chr5:147857651:T:C	rs150243556	T	C	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr5	147963972	147963973	chr5:147963973:C:T	rs7703202	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr5	148180271	148180272	chr5:148180272:C:T	rs4705229	C	T	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr5	148180273	148180274	chr5:148180274:T:C	rs4705230	T	C	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr5	148352220	148352221	chr5:148352221:T:C	rs6870350	T	C	C	Sox3.mouse_HMG_2	11	1	+	4.091571283260396	-2.5928029161999406	CATCAAATCTATTGCTT
chr5	148352228	148352229	chr5:148352229:A:G	rs6866106	A	G	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr5	148578699	148578700	chr5:148578700:G:A	rs6873382	G	A	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr5	148826996	148826997	chr5:148826997:A:C	chr5:148826997:A:C	A	C	A	Sox3.mouse_HMG_2	12	1	-	1.6078015634503926	-4.778787109221322	TGGCAATGGCTGTGATG
chr5	148955679	148955680	chr5:148955680:T:C	rs4705298	T	C	T	Sox3.mouse_HMG_2	8	1	-	11.139962296948864	12.35875268169336	TATCAATGACAGTGGTG
chr5	149203069	149203070	chr5:149203070:A:C	rs6880899	A	C	C	Sox3.mouse_HMG_2	2	1	-	3.9305841757215645	-1.2232904909583227	TGTTGATGTTAGTGATG
chr5	149232377	149232378	chr5:149232378:G:C	rs1011400	G	C	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr5	149320290	149320291	chr5:149320291:A:C	rs540186380	A	C	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr5	149404925	149404926	chr5:149404926:C:T	rs376762382	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr5	149524528	149524529	chr5:149524529:A:T	rs10058728	A	T	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr5	149587338	149587339	chr5:149587339:A:G	rs67190306	A	G	A	Sox3.mouse_HMG_2	1	1	+	6.343652853708036	4.337264911688578	GATCAATGGTAATGCTA
chr5	149886311	149886312	chr5:149886312:G:A	rs61733360	G	A	G	Sox3.mouse_HMG_2	16	1	+	1.9318526679227914	1.7202782414375406	GGTCAATGTCATGGCAG
chr5	150084309	150084310	chr5:150084310:A:G	rs10043508	A	G	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr5	150172248	150172249	chr5:150172249:G:C	rs2282809	G	C	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr5	150216488	150216489	chr5:150216489:G:T	rs6891450	G	T	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr5	150407437	150407438	chr5:150407438:C:T	chr5:150407438:C:T	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr5	150859876	150859877	chr5:150859877:G:T	chr5:150859877:G:T	G	T	g	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr5	151004722	151004723	chr5:151004723:C:G	chr5:151004723:C:G	C	G	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr5	151191594	151191595	chr5:151191595:G:A	rs248438	G	A	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr5	151225508	151225509	chr5:151225509:A:G	rs153462	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr5	151283921	151283922	chr5:151283922:C:T	rs114946340	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr5	151452427	151452428	chr5:151452428:A:G	rs918421	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr5	151523323	151523324	chr5:151523324:T:C	rs11743575	T	C	T	Sox3.mouse_HMG_2	15	1	+	4.71803730883366	0.9382378913278648	GTACAATGCTAGTCATT
chr5	151523598	151523599	chr5:151523599:G:A	rs376564132	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr5	152097467	152097468	chr5:152097468:T:C	rs440768	T	C	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr5	152168711	152168712	chr5:152168712:G:C	rs1946486	G	C	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr5	152475405	152475406	chr5:152475406:A:G	rs28495602	A	G	G	Sox3.mouse_HMG_2	11	1	-	6.285036641343364	-0.3993375581169721	TTTCAGTGCTATTGAAT
chr5	153143702	153143703	chr5:153143703:G:A	rs13154170	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr5	153524002	153524003	chr5:153524003:A:G	rs572798	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr5	153901246	153901247	chr5:153901247:G:A	rs76624928	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr5	154039781	154039782	chr5:154039782:C:T	rs2560062	C	T	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr5	154218363	154218364	chr5:154218364:G:A	rs4958715	G	A	A	Sox3.mouse_HMG_2	13	1	+	7.534376294696517	1.4827377905102055	GATCAATAGCAGTGAAG
chr5	154243207	154243208	chr5:154243208:T:G	rs2122895	T	G	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr5	154243251	154243252	chr5:154243252:C:T	rs2122896	C	T	c	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr5	154258658	154258659	chr5:154258659:A:G	rs520843	A	G	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr5	154282996	154282997	chr5:154282997:G:A	rs185240	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr5	154332331	154332332	chr5:154332332:G:A	rs6580073	G	A	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr5	155044838	155044839	chr5:155044839:G:A	rs287121	G	A	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr5	155576052	155576053	chr5:155576053:G:A	rs991395	G	A	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr5	155665802	155665803	chr5:155665803:A:G	rs17118190	A	G	G	Sox3.mouse_HMG_2	15	1	+	7.047266800219996	6.613529348958655	CAACAATGGCAGTGGAA
chr5	156328243	156328244	chr5:156328244:G:A	rs74755325	G	A	G	Sox3.mouse_HMG_2	7	1	+	4.7116706374110775	-1.9171508576769791	GTACAATGTCATTGCAT
chr5	156590074	156590075	chr5:156590075:A:G	rs3797574	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr5	156590078	156590079	chr5:156590079:A:G	rs157292	A	G	G	Sox3.mouse_HMG_2	15	1	-	6.736065854531329	2.956266437025534	TAACAATGCCATTCATA
chr5	157308909	157308910	chr5:157308910:G:T	rs394975	G	T	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	157308930	157308931	chr5:157308931:C:G	rs442809	C	G	C	Sox3.mouse_HMG_2	11	1	-	5.716840627611678	0.4129886055651661	ACTCAGTTTCAGTGATT
chr5	157475706	157475707	chr5:157475707:C:T	rs75019310	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr5	157550789	157550790	chr5:157550790:C:T	rs12187501	C	T	T	Sox3.mouse_HMG_2	9	1	+	3.0235203909371995	3.7161729338091583	CAACAAGGGCAGTGAGA
chr5	157675114	157675115	chr5:157675115:C:T	rs142164982	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr5	157718397	157718398	chr5:157718398:C:T	rs10053680	C	T	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr5	157890923	157890924	chr5:157890924:A:G	rs11738052	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.2764294879251965	-4.407944711535138	CTTCATTTACATTGGTG
chr5	158080189	158080190	chr5:158080190:G:A	rs1957552	G	A	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr5	158415730	158415731	chr5:158415731:C:T	rs72804565	C	T	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr5	158542505	158542506	chr5:158542506:G:A	rs17624723	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr5	158801991	158801992	chr5:158801992:T:A	rs6556365	T	A	A	Sox3.mouse_HMG_2	10	1	+	3.5064519462225205	10.415206725537741	GATCTATTTCTTTGATA
chr5	159049700	159049701	chr5:159049701:T:C	rs17645325	T	C	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr5	159286663	159286664	chr5:159286664:G:A	rs111764671	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr5	159517076	159517077	chr5:159517077:A:G	rs11959014	A	G	A	Sox3.mouse_HMG_2	6	1	-	7.875683185789495	1.4864017514116037	TGACAATGTTAGTGTTG
chr5	159553027	159553028	chr5:159553028:T:C	rs6885187	T	C	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr5	159765338	159765339	chr5:159765339:C:T	rs365804	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr5	160309021	160309022	chr5:160309022:G:A	rs79101558	G	A	g	Sox3.mouse_HMG_2	16	1	+	3.569519176585449	3.3579447501001987	GAGCAATGGCATGGAGG
chr5	160309036	160309037	chr5:160309037:A:G	rs12659739	A	G	g	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr5	160919830	160919831	chr5:160919831:C:T	rs10515817	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr5	160958290	160958291	chr5:160958291:A:G	rs11749743	A	G	A	Sox3.mouse_HMG_2	9	1	-	1.9890704526286302	1.2964179097566706	CATCAGGGGTATTGAGA
chr5	161198479	161198480	chr5:161198480:T:G	rs164058	T	G	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr5	161286378	161286379	chr5:161286379:A:C	rs153295	A	C	A	Sox3.mouse_HMG_2	1	1	-	3.089345034074616	3.778180651108454	CTTCAATGGTAGAGACC
chr5	161307632	161307633	chr5:161307633:G:T	rs194073	G	T	T	Sox3.mouse_HMG_2	8	1	+	3.468986801665085	4.2826247346693	GAGCAATGGTATTTGTA
chr5	162096716	162096717	chr5:162096717:A:G	rs2910223	A	G	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr5	162128616	162128617	chr5:162128617:C:G	rs78148330	C	G	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr5	162313023	162313024	chr5:162313024:A:G	rs150423568	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr5	163347812	163347813	chr5:163347813:T:C	rs1037931872	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr5	163379818	163379819	chr5:163379819:G:T	rs10746556	G	T	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr5	163574468	163574469	chr5:163574469:G:A	rs934915898	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr5	163861943	163861944	chr5:163861944:A:T	rs138742827	A	T	A	Sox3.mouse_HMG_2	1	1	-	4.538139707809465	7.233363266862762	CTCCAATGATATTGACT
chr5	164189531	164189532	chr5:164189532:G:T	rs6556738	G	T	T	Sox3.mouse_HMG_2	3	1	-	3.302288891365898	-3.5983813478930062	AATCATTTTTACTGATT
chr5	164191735	164191736	chr5:164191736:T:C	rs150212594	T	C	T	Sox3.mouse_HMG_2	11	1	+	6.1891857091520555	-0.49518849030828044	CATAAATTGTATTGTTG
chr5	164191748	164191749	chr5:164191749:A:G	rs184369710	A	G	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr5	164247558	164247559	chr5:164247559:C:T	rs374598012	C	T	C	Sox3.mouse_HMG_2	6	1	-	3.726325687546779	3.726325687546779	CATCCAGGGCATTGATG
chr5	164615273	164615274	chr5:164615274:T:C	rs1366190	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr5	165808377	165808378	chr5:165808378:G:A	chr5:165808378:G:A	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr5	165881401	165881402	chr5:165881402:A:G	rs26435	A	G	a	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr5	165881409	165881410	chr5:165881410:C:T	rs150922313	C	T	C	Sox3.mouse_HMG_2	15	1	-	5.888976521483365	6.322713972744706	GTACAATTATAGTGAGA
chr5	166371315	166371316	chr5:166371316:G:A	rs17066756	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr5	166443183	166443184	chr5:166443184:G:A	rs1799571	G	A	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr5	167030425	167030426	chr5:167030426:C:T	rs2062698	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr5	167405856	167405857	chr5:167405857:G:A	rs66716755	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr5	167454171	167454172	chr5:167454172:T:C	rs1030669	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr5	167684087	167684088	chr5:167684088:A:G	rs12521170	A	G	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	168147616	168147617	chr5:168147617:G:C	rs10077866	G	C	G	Sox3.mouse_HMG_2	1	1	+	2.880763797148915	2.171710202824432	AGGCAATGCCATTGCTT
chr5	168362430	168362431	chr5:168362431:C:G	rs10065566	C	G	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr5	168598319	168598320	chr5:168598320:C:T	rs158575	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr5	168820969	168820970	chr5:168820970:C:A	rs11134534	C	A	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr5	168988781	168988782	chr5:168988782:C:A	rs113348765	C	A	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr5	169696083	169696084	chr5:169696084:C:A	rs943060885	C	A	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr5	169701961	169701962	chr5:169701962:T:A	rs2161404	T	A	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr5	169764244	169764245	chr5:169764245:G:A	rs17645503	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr5	170176777	170176778	chr5:170176778:A:G	rs10065762	A	G	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr5	170182236	170182237	chr5:170182237:C:T	rs878187	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr5	170313143	170313144	chr5:170313144:T:C	rs77892282	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr5	170328064	170328065	chr5:170328065:C:T	rs315781	C	T	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr5	170328105	170328106	chr5:170328106:C:T	rs13170456	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr5	170386291	170386292	chr5:170386292:T:G	rs314113	T	G	T	Sox3.mouse_HMG_2	7	1	+	3.372068983437076	4.497960197282322	CAGCAATTAGAGTGATG
chr5	170519862	170519863	chr5:170519863:T:A	rs13172157	T	A	T	Sox3.mouse_HMG_2	6	1	+	3.6902577643443393	-3.2178174634487173	TGTCATTTGTATTGTTG
chr5	170569589	170569590	chr5:170569590:T:C	rs12652223	T	C	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr5	170654250	170654251	chr5:170654251:G:A	rs9313516	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr5	170750238	170750239	chr5:170750239:A:T	rs147768444	A	T	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr5	171355720	171355721	chr5:171355721:A:G	rs72494521	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr5	171689548	171689549	chr5:171689549:T:A	rs62381885	T	A	T	Sox3.mouse_HMG_2	14	1	-	6.810827103587149	2.7914455798385043	TATTAATGTTACTGATA
chr5	171756810	171756811	chr5:171756811:T:C	rs702068	T	C	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr5	171847220	171847221	chr5:171847221:T:C	rs702097	T	C	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr5	172104254	172104255	chr5:172104255:T:A	rs11955888	T	A	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr5	172104255	172104256	chr5:172104256:C:T	rs11952459	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr5	172363036	172363037	chr5:172363037:C:T	rs116315801	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr5	172510479	172510480	chr5:172510480:T:C	rs75699607	T	C	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr5	172531662	172531663	chr5:172531663:G:T	rs72848120	G	T	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	172692715	172692716	chr5:172692716:T:C	rs7733395	T	C	T	Sox3.mouse_HMG_2	0	1	+	6.7078718522713165	7.193006866525425	TGTAAATGTTATTGAGA
chr5	172727980	172727981	chr5:172727981:T:C	rs80060116	T	C	T	Sox3.mouse_HMG_2	7	1	+	4.201927296183617	-1.3010029850591944	CTTCCATTTTAGTGAGG
chr5	172728003	172728004	chr5:172728004:G:A	rs2662233	G	A	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr5	172871037	172871038	chr5:172871038:A:G	rs79718175	A	G	A	Sox3.mouse_HMG_2	9	1	-	2.9906010127715152	2.2979484698995556	CATTAATACTATTGGTG
chr5	173052334	173052335	chr5:173052335:G:T	chr5:173052335:G:T	G	T	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr5	173248030	173248031	chr5:173248031:A:G	rs62378332	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr5	173452295	173452296	chr5:173452296:C:T	rs559655191	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr5	173452313	173452314	chr5:173452314:A:G	rs28416555	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.390180482652463	-1.9991009517254281	TGTCAATGGCACTGAGC
chr5	173452335	173452336	chr5:173452336:C:T	rs149069520	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr5	173469126	173469127	chr5:173469127:C:T	rs17075987	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr5	173522062	173522063	chr5:173522063:G:C	rs4868283	G	C	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr5	173633567	173633568	chr5:173633568:C:T	rs60845421	C	T	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr5	173659866	173659867	chr5:173659867:G:A	rs17688826	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr5	173809272	173809273	chr5:173809273:G:A	rs77071376	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr5	174178005	174178006	chr5:174178006:A:G	rs62393850	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr5	174179947	174179948	chr5:174179948:A:G	rs67027067	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr5	174292950	174292951	chr5:174292951:G:A	rs116693626	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr5	174551440	174551441	chr5:174551441:A:G	rs11739925	A	G	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr5	174565611	174565612	chr5:174565612:A:T	rs1490042	A	T	A	Sox3.mouse_HMG_2	5	1	+	8.07059678412043	1.1625215563273714	TCTCAATTTCATTGTAT
chr5	174763263	174763264	chr5:174763264:C:T	rs56359625	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr5	174951302	174951303	chr5:174951303:A:T	rs7737192	A	T	a	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr5	174972894	174972895	chr5:174972895:C:T	rs11134893	C	T	c	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr5	175411276	175411277	chr5:175411277:A:G	rs10476155	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr5	175922993	175922994	chr5:175922994:C:T	rs113166697	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr5	176410992	176410993	chr5:176410993:C:G	rs114309703	C	G	.	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr5	176553879	176553880	chr5:176553880:C:A	rs12522196	C	A	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr5	177041081	177041082	chr5:177041082:G:A	rs1231218357	G	A	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr5	177137187	177137188	chr5:177137188:G:A	rs1052432	G	A	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr5	177440480	177440481	chr5:177440481:G:A	rs549353097	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr5	177592828	177592829	chr5:177592829:G:A	rs73337753	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr5	177889617	177889618	chr5:177889618:A:G	rs142522568	A	G	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr5	177889655	177889656	chr5:177889656:T:C	rs867649	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr5	178106772	178106773	chr5:178106773:A:G	rs57472053	A	G	.	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr5	178186834	178186835	chr5:178186835:C:T	rs2961664	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr5	178195282	178195283	chr5:178195283:G:C	rs2913814	G	C	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr5	178370109	178370110	chr5:178370110:G:A	rs2973714	G	A	g	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr5	178458140	178458141	chr5:178458141:T:C	rs11739643	T	C	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr5	178458145	178458146	chr5:178458146:G:A	rs11748000	G	A	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr5	178467891	178467892	chr5:178467892:C:T	rs1171485519	C	T	C	Sox3.mouse_HMG_2	0	1	+	2.819149844602172	2.3340148303480643	CTTCCATGCTAGTGACA
chr5	178467902	178467903	chr5:178467903:G:C	rs1546222	G	C	G	Sox3.mouse_HMG_2	11	1	+	2.819149844602172	-2.484702177444339	CTTCCATGCTAGTGACA
chr5	178521075	178521076	chr5:178521076:T:A	rs6600940	T	A	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr5	178635504	178635505	chr5:178635505:A:C	rs111623176	A	C	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr5	178861981	178861982	chr5:178861982:G:A	rs11740486	G	A	g	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr5	178862018	178862019	chr5:178862019:G:A	rs11740503	G	A	-	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr5	179187691	179187692	chr5:179187692:G:A	rs252070	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr5	179336722	179336723	chr5:179336723:G:A	rs76653143	G	A	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr5	179414874	179414875	chr5:179414875:C:T	rs12652161	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr5	179415928	179415929	chr5:179415929:T:C	rs11743636	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.5235914492299645	-2.8656899851479243	ATTCAATTCTACTGAGT
chr5	179467244	179467245	chr5:179467245:G:A	rs11952560	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr5	179485253	179485254	chr5:179485254:C:T	rs13178536	C	T	T	Sox3.mouse_HMG_2	11	1	-	2.5431009749782314	-2.028383153355054	GAACAAAGACAGTGAAA
chr5	179644923	179644924	chr5:179644924:G:A	rs141003025	G	A	g	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr5	179644956	179644957	chr5:179644957:C:G	rs7731123	C	G	c	Sox3.mouse_HMG_2	1	1	-	4.146433288095517	3.4373796937710357	GGACAGTGTTATTGGTA
chr5	180034973	180034974	chr5:180034974:G:C	rs62405019	G	C	G	Sox3.mouse_HMG_2	1	1	+	15.219778022405006	14.510724428080524	TGTCAATTTTATTGATA
chr5	180117660	180117661	chr5:180117661:A:T	rs114343131	A	T	A	Sox3.mouse_HMG_2	2	1	-	6.581595999985651	3.2999392242021104	GATCAATTTTATTTTTC
chr5	180168859	180168860	chr5:180168860:G:C	rs57606278	G	C	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr5	180173993	180173994	chr5:180173994:G:A	rs10455080	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr5	180181359	180181360	chr5:180181360:T:C	rs11749727	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr5	180196636	180196637	chr5:180196637:G:A	rs7720553	G	A	g	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr5	180331607	180331608	chr5:180331608:T:A	rs115152588	T	A	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr5	180587615	180587616	chr5:180587616:A:G	rs13186854	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr5	181254017	181254018	chr5:181254018:C:T	rs192169869	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr6	229317	229318	chr6:229318:A:G	rs12213088	A	G	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr6	250099	250100	chr6:250100:G:A	rs13216889	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	256943	256944	chr6:256944:G:A	rs13340431	G	A	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr6	256958	256959	chr6:256959:G:A	rs1033776	G	A	A	Sox3.mouse_HMG_2	3	1	-	3.5365037487857225	-1.3203521264364992	TTTCAATGTCAAAGATT
chr6	312346	312347	chr6:312347:T:G	rs188478345	T	G	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr6	452727	452728	chr6:452728:A:G	rs870080	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.6460707466816973	-3.038303452778639	GCTCAGTTCCATTGGTA
chr6	452731	452732	chr6:452732:A:G	rs55776749	A	G	G	Sox3.mouse_HMG_2	7	1	-	3.6460707466816973	-1.8568595345611152	GCTCAGTTCCATTGGTA
chr6	681197	681198	chr6:681198:T:C	rs9504741	T	C	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr6	1016748	1016749	chr6:1016749:G:A	rs10793858	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr6	1016773	1016774	chr6:1016774:A:C	rs845890	A	C	A	Sox3.mouse_HMG_2	7	1	-	3.4028853562333796	4.528776570078625	GTACATTTTTATTGAAT
chr6	1016800	1016801	chr6:1016801:C:T	rs1237687279	C	T	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr6	1028325	1028326	chr6:1028326:A:G	rs1737688	A	G	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr6	1198045	1198046	chr6:1198046:T:C	rs463443	T	C	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr6	1414449	1414450	chr6:1414450:G:A	rs7742720	G	A	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr6	1437107	1437108	chr6:1437108:C:T	rs62389789	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr6	1449975	1449976	chr6:1449976:A:G	rs2816242	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr6	1487597	1487598	chr6:1487598:T:C	rs9392296	T	C	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr6	1539019	1539020	chr6:1539020:C:T	chr6:1539020:C:T	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr6	1578534	1578535	chr6:1578535:T:C	rs2569839	T	C	C	Sox3.mouse_HMG_2	0	1	+	2.901112368712261	3.3862473829663697	TATCAGATTTATTGATC
chr6	1765571	1765572	chr6:1765572:T:A	rs1076703	T	A	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr6	1765572	1765573	chr6:1765573:C:A	rs742535	C	A	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr6	2246814	2246815	chr6:2246815:G:A	rs12198593	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr6	2391682	2391683	chr6:2391683:A:G	rs77238841	A	G	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr6	2429338	2429339	chr6:2429339:T:C	rs13196905	T	C	C	Sox3.mouse_HMG_2	10	1	+	2.9702907264244334	2.9702907264244334	GAGCAATGCCTTTGAGT
chr6	2626965	2626966	chr6:2626966:A:G	rs9378721	A	G	A	Sox3.mouse_HMG_2	14	1	+	3.1615267886635485	-0.1565394811080531	AATGAATTCCAGTGACA
chr6	2666933	2666934	chr6:2666934:C:T	rs9501867	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr6	2719314	2719315	chr6:2719315:A:G	rs58421728	A	G	A	Sox3.mouse_HMG_2	13	1	+	3.6062622728730487	9.65790077705936	GACCAATGGTATTAAAA
chr6	2865876	2865877	chr6:2865877:A:G	rs77653337	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	2979976	2979977	chr6:2979977:C:T	rs111792734	C	T	c	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr6	2979980	2979981	chr6:2979981:C:G	rs111421945	C	G	g	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr6	3061573	3061574	chr6:3061574:G:A	rs73353536	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	3084894	3084895	chr6:3084895:G:T	rs7753662	G	T	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr6	3160241	3160242	chr6:3160242:T:C	rs561795454	T	C	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr6	3200236	3200237	chr6:3200237:G:A	rs367761565	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	3367993	3367994	chr6:3367994:C:T	rs979306	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr6	3572313	3572314	chr6:3572314:T:C	rs875087	T	C	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr6	3696816	3696817	chr6:3696817:T:C	rs62392375	T	C	T	Sox3.mouse_HMG_2	12	1	+	5.921314951709419	-0.12965218622139846	TTTCAGTGCTATTGAAG
chr6	3754754	3754755	chr6:3754755:T:G	rs111722137	T	G	T	Sox3.mouse_HMG_2	5	1	-	4.005350954979777	-2.902724272813282	CTTCAACTGTATTGTTG
chr6	3965042	3965043	chr6:3965043:A:G	rs7746564	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.8814426521626206	-3.5078387822152677	CATCAATGGGATTAGTG
chr6	4029887	4029888	chr6:4029888:A:G	rs6906467	A	G	A	Sox3.mouse_HMG_2	1	1	+	3.1612225142957326	1.1548345722762758	CATTAATTTCTTTGAAG
chr6	4163118	4163119	chr6:4163119:T:C	rs613546	T	C	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr6	4319955	4319956	chr6:4319956:G:A	rs2326477	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr6	4319973	4319974	chr6:4319974:T:G	rs76432767	T	G	T	Sox3.mouse_HMG_2	4	1	-	4.984106108170494	-1.923969119622561	TGTCAAATCCAGTGATA
chr6	4395216	4395217	chr6:4395217:T:C	rs168126	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr6	4537464	4537465	chr6:4537465:A:G	rs72817657	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	4773095	4773096	chr6:4773096:A:T	rs6908435	A	T	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr6	4963601	4963602	chr6:4963602:A:C	rs56212538	A	C	C	Sox3.mouse_HMG_2	6	1	-	3.2566691533931724	-3.6514060743998837	GCTGAATTGCAGTGGTG
chr6	5059664	5059665	chr6:5059665:C:A	chr6:5059665:C:A	C	A	c	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr6	5098409	5098410	chr6:5098410:C:T	rs389707	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr6	5098419	5098420	chr6:5098420:C:T	rs389691	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr6	5102393	5102394	chr6:5102394:T:C	rs461144	T	C	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr6	5383704	5383705	chr6:5383705:G:A	rs1424738	G	A	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr6	5454983	5454984	chr6:5454984:A:C	rs115387213	A	C	A	Sox3.mouse_HMG_2	5	1	+	9.77589755531706	2.867822327524002	ATTTAATGTCATTGATT
chr6	5593846	5593847	chr6:5593847:A:G	rs9405853	A	G	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr6	5725997	5725998	chr6:5725998:A:C	rs17292578	A	C	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr6	5740723	5740724	chr6:5740724:A:G	rs6900556	A	G	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr6	5764967	5764968	chr6:5764968:T:G	rs73364259	T	G	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr6	5816942	5816943	chr6:5816943:G:A	rs6597165	G	A	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr6	5853510	5853511	chr6:5853511:C:T	rs75991116	C	T	C	Sox3.mouse_HMG_2	8	1	+	10.722350750581892	11.97677271673756	CATCAATGCTAGTGGGT
chr6	5853512	5853513	chr6:5853513:A:G	rs796514270	A	G	A	Sox3.mouse_HMG_2	10	1	+	10.722350750581892	3.8135959712666723	CATCAATGCTAGTGGGT
chr6	6260195	6260196	chr6:6260196:A:T	rs2815815	A	T	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr6	6384564	6384565	chr6:6384565:A:G	rs9504789	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr6	6554817	6554818	chr6:6554818:C:T	rs623810	C	T	C	Sox3.mouse_HMG_2	7	1	-	4.468226762085663	-2.160594733002394	CCACAGTGGTAGTGATG
chr6	6616194	6616195	chr6:6616195:A:G	rs3827782	A	G	A	Sox3.mouse_HMG_2	2	1	+	2.3509159155732506	0.478698024676897	GCACAATCTCAGTGAAG
chr6	6662705	6662706	chr6:6662706:A:G	rs201011	A	G	G	Sox3.mouse_HMG_2	12	1	-	3.4686267177578802	-2.582340420172936	AAGCAATGATAGTGGAG
chr6	6691908	6691909	chr6:6691909:T:C	rs115560	T	C	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr6	6702035	6702036	chr6:6702036:A:G	rs116279281	A	G	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr6	6702041	6702042	chr6:6702042:C:G	rs113732471	C	G	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr6	6702042	6702043	chr6:6702043:G:T	rs115594493	G	T	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr6	6702045	6702046	chr6:6702046:A:C	rs371814563	A	C	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr6	6702053	6702054	chr6:6702054:A:G	rs180873255	A	G	A	Sox3.mouse_HMG_2	15	1	-	3.13454847049339	-0.6452509470124056	TATGAATGCCAGCGATG
chr6	6803204	6803205	chr6:6803205:G:T	rs4959410	G	T	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr6	7438836	7438837	chr6:7438837:G:A	rs11243180	G	A	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr6	7484360	7484361	chr6:7484361:G:A	rs4960326	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr6	7660633	7660634	chr6:7660634:A:G	rs80008042	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr6	7824096	7824097	chr6:7824097:T:C	rs6913356	T	C	T	Sox3.mouse_HMG_2	15	1	+	1.9637984253182732	-1.8160009921875226	CCACAGTGTTAGTGGTG
chr6	7959489	7959490	chr6:7959490:C:T	rs17340112	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr6	7974451	7974452	chr6:7974452:A:G	rs7769437	A	G	A	Sox3.mouse_HMG_2	1	1	+	1.596697607096917	-0.4096903349225411	GATCATTGCCATGGAAA
chr6	7974471	7974472	chr6:7974472:C:T	rs9406071	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr6	8071438	8071439	chr6:8071439:A:T	rs9378519	A	T	A	Sox3.mouse_HMG_2	5	1	+	2.752683661265645	-4.155391566527412	AATCAAATCCAGTGAAC
chr6	8284016	8284017	chr6:8284017:C:T	rs660214	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr6	8369819	8369820	chr6:8369820:T:C	rs1934784	T	C	T	Sox3.mouse_HMG_2	4	1	-	4.506126813823387	-1.8831546205545013	TATCACTTTTATTTATT
chr6	8628945	8628946	chr6:8628946:T:A	rs330102	T	A	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr6	9394497	9394498	chr6:9394498:T:C	rs1206906	T	C	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr6	9522498	9522499	chr6:9522499:C:T	rs114334891	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr6	9523960	9523961	chr6:9523961:G:T	rs9296557	G	T	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr6	9564462	9564463	chr6:9564463:G:A	rs78649119	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr6	9852101	9852102	chr6:9852102:C:T	rs61657721	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr6	9852128	9852129	chr6:9852129:G:C	rs10949350	G	C	G	Sox3.mouse_HMG_2	3	1	-	1.7685729229159883	-4.28194638697331	CATCCATGCCATTAAGT
chr6	9944133	9944134	chr6:9944134:G:A	rs4716126	G	A	G	Sox3.mouse_HMG_2	0	1	-	3.663798354772675	3.1786633405185674	CAACGATTTCAGTGAAA
chr6	10195466	10195467	chr6:10195467:A:G	rs2327253	A	G	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr6	10244739	10244740	chr6:10244740:T:G	rs7739876	T	G	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr6	10331937	10331938	chr6:10331938:G:A	rs6940901	G	A	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	10403416	10403417	chr6:10403417:C:T	rs3798696	C	T	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr6	10555055	10555056	chr6:10555056:T:C	rs3756948	T	C	T	Sox3.mouse_HMG_2	15	1	+	9.103405842954873	5.323606425449076	TATCAATTCCATTCATG
chr6	10559717	10559718	chr6:10559718:G:A	rs538918175	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr6	10559718	10559719	chr6:10559719:A:G	rs181455365	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr6	10621313	10621314	chr6:10621314:C:T	rs9460944	C	T	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr6	10722339	10722340	chr6:10722340:C:G	rs12663432	C	G	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr6	11065688	11065689	chr6:11065689:C:T	rs9468373	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr6	11318434	11318435	chr6:11318435:C:T	rs558579970	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	11318438	11318439	chr6:11318439:G:T	rs6900129	G	T	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr6	11318448	11318449	chr6:11318449:A:T	rs6923444	A	T	T	Sox3.mouse_HMG_2	1	1	+	1.9194905315884996	-0.7757330274647971	CATCATTGTCTGTGATC
chr6	11618757	11618758	chr6:11618758:T:C	rs111461403	T	C	T	Sox3.mouse_HMG_2	15	1	+	5.604249435644727	1.8244500181389303	GATCAATATTTTTGATA
chr6	11767602	11767603	chr6:11767603:C:T	rs146574481	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr6	11868309	11868310	chr6:11868310:C:G	rs6918454	C	G	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr6	11917836	11917837	chr6:11917837:G:A	rs147588741	G	A	G	Sox3.mouse_HMG_2	13	1	-	1.4499433108677984	1.4499433108677984	GCTCAATGGCATTCGGC
chr6	11922154	11922155	chr6:11922155:T:C	rs999823	T	C	T	Sox3.mouse_HMG_2	0	1	+	5.148311496368806	5.633446510622915	TTTCAATTTCATGGAAA
chr6	12070028	12070029	chr6:12070029:T:A	chr6:12070029:T:A	T	A	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr6	12231316	12231317	chr6:12231317:C:T	rs1029326	C	T	C	Sox3.mouse_HMG_2	0	1	-	2.5755718767067735	0.8790795830041108	GTTGAATTGCAGTGTTG
chr6	12234965	12234966	chr6:12234966:T:C	rs4490660	T	C	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr6	12354154	12354155	chr6:12354155:T:C	rs2050288	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr6	12512103	12512104	chr6:12512104:A:G	rs9369393	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr6	12512111	12512112	chr6:12512112:A:G	rs9369394	A	G	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr6	12539664	12539665	chr6:12539665:C:T	rs9296411	C	T	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr6	12679671	12679672	chr6:12679672:A:G	rs12196110	A	G	A	Sox3.mouse_HMG_2	8	1	-	9.609980664243114	8.355558698087444	GATCACTTTCAGTGATT
chr6	12753212	12753213	chr6:12753213:T:C	rs150885542	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	13260220	13260221	chr6:13260221:C:T	rs396360	C	T	T	Sox3.mouse_HMG_2	14	1	-	4.486518032724384	7.804584302495985	TATCCATTACATTGGTG
chr6	13371526	13371527	chr6:13371527:T:C	rs749905785	T	C	T	Sox3.mouse_HMG_2	15	1	+	4.913643568499959	1.1338441509941621	AAACAATTTCAGAGATA
chr6	13681241	13681242	chr6:13681242:G:C	rs151171700	G	C	G	Sox3.mouse_HMG_2	5	1	+	1.124076667702081	0.6052828742869135	GATCAGTGGTTGTGAGG
chr6	13794874	13794875	chr6:13794875:G:A	rs11961150	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr6	14025267	14025268	chr6:14025268:G:A	rs534340448	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr6	14118586	14118587	chr6:14118587:G:A	rs7768355	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	14128843	14128844	chr6:14128844:T:G	rs4712226	T	G	T	Sox3.mouse_HMG_2	2	1	+	6.3122801199548375	1.1584054532749462	AATAAATTTTATTGGTG
chr6	14310408	14310409	chr6:14310409:G:A	rs7744905	G	A	A	Sox3.mouse_HMG_2	11	1	+	4.380719050674873	-0.1907650776584105	CATGAAAGTCAGTGATT
chr6	14389261	14389262	chr6:14389262:T:G	rs11752420	T	G	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr6	14450172	14450173	chr6:14450173:C:T	rs780789464	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr6	14822913	14822914	chr6:14822914:C:G	rs116790906	C	G	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr6	14822949	14822950	chr6:14822950:A:C	rs62390275	A	C	A	Sox3.mouse_HMG_2	0	1	-	3.6249505341270116	4.414719065905309	TGTCAATGTTGTTTATT
chr6	14884164	14884165	chr6:14884165:G:C	rs52875	G	C	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr6	14925907	14925908	chr6:14925908:C:T	rs138535213	C	T	C	Sox3.mouse_HMG_2	6	1	+	3.0983615317744904	9.48764296615238	CTTCAACGCTAGTGTTA
chr6	15256836	15256837	chr6:15256837:G:A	rs10949287	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr6	15285077	15285078	chr6:15285078:A:T	rs116599870	A	T	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	15370081	15370082	chr6:15370082:G:A	rs34338229	G	A	G	Sox3.mouse_HMG_2	11	1	+	2.4162950423090237	-2.1551890860242624	AATAAATGTCAGTGGGA
chr6	15497362	15497363	chr6:15497363:T:C	rs58121172	T	C	C	Sox3.mouse_HMG_2	0	1	+	4.4414190813313805	4.926554095585489	TAAGAATGGTATTGAGC
chr6	15622381	15622382	chr6:15622382:G:T	rs2743872	G	T	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr6	15688379	15688380	chr6:15688380:G:T	rs6937887	G	T	T	Sox3.mouse_HMG_2	8	1	+	4.336773765945726	5.150411698949939	GGTCAATTGTATTAACC
chr6	15776787	15776788	chr6:15776788:T:C	rs1927573	T	C	t	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr6	15815962	15815963	chr6:15815963:A:G	rs11751408	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr6	16004972	16004973	chr6:16004973:G:A	rs9477012	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr6	16080443	16080444	chr6:16080444:A:C	rs4716041	A	C	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr6	16215618	16215619	chr6:16215619:C:T	rs61569822	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr6	16440801	16440802	chr6:16440802:T:C	rs1709172	T	C	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr6	16510417	16510418	chr6:16510418:A:C	rs548709837	A	C	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr6	16586444	16586445	chr6:16586445:T:C	rs236971	T	C	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr6	16685288	16685289	chr6:16685289:T:G	rs2327995	T	G	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr6	16846580	16846581	chr6:16846581:A:G	rs73372395	A	G	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr6	16921544	16921545	chr6:16921545:C:T	rs6904876	C	T	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	16921545	16921546	chr6:16921546:G:A	rs73725283	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr6	17415824	17415825	chr6:17415825:G:T	rs112907704	G	T	T	Sox3.mouse_HMG_2	9	1	-	1.5213588151187518	-3.769969901893607	GCGCAATGTCAATGGTG
chr6	17415832	17415833	chr6:17415833:G:A	rs17379883	G	A	G	Sox3.mouse_HMG_2	1	1	-	1.5213588151187518	1.5415767924093964	GCGCAATGTCAATGGTG
chr6	17780553	17780554	chr6:17780554:T:C	rs4716184	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.8427270196977283	-4.546554414680162	GGTCAATGTCATCCAGT
chr6	17843721	17843722	chr6:17843722:T:C	rs12192810	T	C	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr6	18213756	18213757	chr6:18213757:C:T	rs6903583	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr6	18284484	18284485	chr6:18284485:C:T	rs214544	C	T	C	Sox3.mouse_HMG_2	0	1	-	5.312099820498448	3.6156075267957855	GAAGAATGGTAGTGAAA
chr6	18364501	18364502	chr6:18364502:G:C	rs6928572	G	C	c	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr6	18432448	18432449	chr6:18432449:T:G	chr6:18432449:T:G	T	G	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr6	18434358	18434359	chr6:18434359:T:C	rs145067404	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr6	18784213	18784214	chr6:18784214:C:A	rs7770682	C	A	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr6	18976527	18976528	chr6:18976528:A:C	rs77257918	A	C	A	Sox3.mouse_HMG_2	7	1	-	2.7338944683423345	3.8597856821875802	GGCCAATTTTTTTGATA
chr6	19025646	19025647	chr6:19025647:T:C	rs7749839	T	C	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr6	19362656	19362657	chr6:19362657:A:C	rs9465360	A	C	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr6	19390023	19390024	chr6:19390024:C:G	rs1495983	C	G	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr6	19394803	19394804	chr6:19394804:T:G	rs16882123	T	G	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr6	20119802	20119803	chr6:20119803:C:A	rs80167365	C	A	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr6	20119833	20119834	chr6:20119834:C:G	rs59798923	C	G	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	20302864	20302865	chr6:20302865:C:T	rs6933481	C	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr6	20414588	20414589	chr6:20414589:A:G	rs9460502	A	G	A	Sox3.mouse_HMG_2	9	1	-	4.8491366273872885	4.156484084515328	AGTCAATTATAGAGATA
chr6	20630240	20630241	chr6:20630241:G:A	rs9465844	G	A	G	Sox3.mouse_HMG_2	8	1	-	5.193693936391643	6.448115902547311	TATCAATGCCAGAGACA
chr6	20738177	20738178	chr6:20738178:A:G	rs9368229	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr6	20795216	20795217	chr6:20795217:A:G	rs11751916	A	G	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr6	20827813	20827814	chr6:20827814:T:G	rs190783796	T	G	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr6	20990852	20990853	chr6:20990853:G:A	rs12528036	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr6	21189756	21189757	chr6:21189757:T:C	rs10452581	T	C	T	Sox3.mouse_HMG_2	11	1	+	4.767449126405543	-1.9169250730547922	TTTTAATGTTATTGCTA
chr6	21457718	21457719	chr6:21457719:C:T	rs11758386	C	T	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr6	21602320	21602321	chr6:21602321:T:C	rs1620996	T	C	C	Sox3.mouse_HMG_2	16	1	-	1.6456477746537626	1.8572222011390134	GTTCAAAGGCATGGATA
chr6	21778425	21778426	chr6:21778426:C:A	rs11754771	C	A	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr6	21924284	21924285	chr6:21924285:A:G	rs12196619	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.184156726834715	-4.500217472625621	CTTCAGTGCCATTGGAA
chr6	22098977	22098978	chr6:22098978:A:G	rs140546200	A	G	A	Sox3.mouse_HMG_2	8	1	-	5.68767527129992	4.43325330514425	TAACAATGTTATTAAAC
chr6	22151517	22151518	chr6:22151518:T:C	rs6923515	T	C	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr6	22366580	22366581	chr6:22366581:G:A	rs1205917	G	A	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	22366713	22366714	chr6:22366714:T:C	rs75181074	T	C	T	Sox3.mouse_HMG_2	12	1	+	2.310160432966633	-3.740806704964183	CAGCATTTGTATTGAGG
chr6	22409872	22409873	chr6:22409873:C:T	rs139361548	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr6	22421125	22421126	chr6:22421126:A:T	rs4370356	A	T	A	Sox3.mouse_HMG_2	15	1	-	7.113159461525801	4.809769768067116	ATACAATGCCAGTGATC
chr6	22452298	22452299	chr6:22452299:A:C	rs60380354	A	C	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr6	22452320	22452321	chr6:22452321:A:G	rs35661144	A	G	A	Sox3.mouse_HMG_2	10	1	+	4.330907891580185	-2.5778468877350353	TTGCAATTTTATTGGAT
chr6	23042811	23042812	chr6:23042812:C:T	rs115012330	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr6	23408050	23408051	chr6:23408051:G:C	rs1078759	G	C	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr6	23433799	23433800	chr6:23433800:G:A	rs1291421	G	A	G	Sox3.mouse_HMG_2	7	1	+	3.4010319540566365	-3.2277895410314184	CCTCAATGTTCTTCATT
chr6	23682114	23682115	chr6:23682115:G:A	rs12212513	G	A	G	Sox3.mouse_HMG_2	1	1	+	3.695765113959483	5.702153055978939	GGTGATTGTCATTGATG
chr6	23955367	23955368	chr6:23955368:C:G	rs489365	C	G	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr6	24447151	24447152	chr6:24447152:A:T	rs113984289	A	T	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	24531190	24531191	chr6:24531191:T:A	rs12199914	T	A	T	Sox3.mouse_HMG_2	10	1	-	2.7429132212782257	-4.165841558036994	TAACAAGGCCAGTGAAG
chr6	24614834	24614835	chr6:24614835:G:A	rs7763790	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr6	24631908	24631909	chr6:24631909:C:G	rs6923867	C	G	G	Sox3.mouse_HMG_2	3	1	+	4.372193977678886	-1.6783253322104112	TTTCTATGTCAGTGAAA
chr6	24644029	24644030	chr6:24644030:T:C	rs115563696	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.73004869453397	-1.6592327398439186	AAACTATGTTATTGAGG
chr6	24880232	24880233	chr6:24880233:A:G	rs911255058	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.25890083878896	-2.130380595588929	TATAAATGTTAGTCATT
chr6	24932099	24932100	chr6:24932100:C:T	rs766697923	C	T	c	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr6	24932112	24932113	chr6:24932113:T:G	rs983329460	T	G	t	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr6	25007413	25007414	chr6:25007414:G:A	rs549834341	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr6	25302718	25302719	chr6:25302719:T:C	rs9348670	T	C	T	Sox3.mouse_HMG_2	1	1	-	4.512138596811613	2.505750654792156	CATCGCTGTTATTGATC
chr6	25302719	25302720	chr6:25302720:G:A	rs139951632	G	A	G	Sox3.mouse_HMG_2	0	1	-	4.512138596811613	4.027003582557504	CATCGCTGTTATTGATC
chr6	25318817	25318818	chr6:25318818:A:G	rs113875637	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr6	25472558	25472559	chr6:25472559:G:A	rs9393646	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr6	25503506	25503507	chr6:25503507:C:T	rs17253044	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr6	25516566	25516567	chr6:25516567:A:G	rs17266491	A	G	A	Sox3.mouse_HMG_2	14	1	+	2.864203722838064	-0.45386254693353695	CAGCAATTTCTTTGAAG
chr6	25764911	25764912	chr6:25764912:A:G	rs2154217	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.3441091969464285	-3.045172237431461	ATACAATGTTATTGCAG
chr6	25776720	25776721	chr6:25776721:G:A	rs11754288	G	A	G	Sox3.mouse_HMG_2	9	1	-	7.0065319514805315	7.699184494352491	TACCAATGGCAGTGAAG
chr6	25911546	25911547	chr6:25911547:T:C	rs3846838	T	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr6	25992210	25992211	chr6:25992211:A:C	chr6:25992211:A:C	A	C	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr6	26022803	26022804	chr6:26022804:C:T	rs72834629	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr6	26026724	26026725	chr6:26026725:G:A	rs551140469	G	A	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr6	26026985	26026986	chr6:26026986:G:A	rs116366733	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr6	26027008	26027009	chr6:26027009:C:G	rs752050927	C	G	C	Sox3.mouse_HMG_2	15	1	+	5.262504893934967	6.305177166720736	CATCCATGGCAGTGACA
chr6	26045036	26045037	chr6:26045037:C:T	chr6:26045037:C:T	C	T	C	Sox3.mouse_HMG_2	11	1	-	5.477271628385055	0.905787500051769	TATCAATGCTGGTGAAC
chr6	26224882	26224883	chr6:26224883:A:G	rs74758545	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr6	26239175	26239176	chr6:26239176:A:G	rs9358913	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.709414649672863	-2.679866784705027	ATACAATGCCATTTATT
chr6	26255222	26255223	chr6:26255223:A:G	rs6935954	A	G	.	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr6	26286239	26286240	chr6:26286240:T:C	rs56763414	T	C	T	Sox3.mouse_HMG_2	11	1	+	6.936959385428918	0.252585185968582	TTTTAATTTTATTGAGA
chr6	26377762	26377763	chr6:26377763:C:G	rs34637389	C	G	C	Sox3.mouse_HMG_2	3	1	+	2.126476891304397	-3.9240424185848997	GATCACTGTGAGTGGTT
chr6	26553763	26553764	chr6:26553764:G:T	chr6:26553764:G:T	G	T	G	Sox3.mouse_HMG_2	8	1	-	3.433619726473274	2.6556133748802355	TCTCAATTCCATTTGTT
chr6	26555650	26555651	chr6:26555651:A:G	rs10484442	A	G	A	Sox3.mouse_HMG_2	5	1	+	7.6837239683283585	1.2944425339504695	ATTCAATGCTATTTATT
chr6	26575468	26575469	chr6:26575469:G:A	rs9467798	G	A	A	Sox3.mouse_HMG_2	9	1	-	6.949005669528276	7.641658212400234	TTTTAATTACATTGATA
chr6	27291192	27291193	chr6:27291193:C:T	rs3800317	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	27583429	27583430	chr6:27583430:T:G	rs73739148	T	G	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr6	27680270	27680271	chr6:27680271:C:G	rs117974412	C	G	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr6	27773902	27773903	chr6:27773903:C:T	rs6915101	C	T	c	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr6	27977617	27977618	chr6:27977618:G:A	rs28360499	G	A	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr6	28292665	28292666	chr6:28292666:C:G	rs11758337	C	G	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	28607394	28607395	chr6:28607395:T:A	rs1474986	T	A	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr6	28865394	28865395	chr6:28865395:A:G	rs393431	A	G	G	Sox3.mouse_HMG_2	5	1	+	4.120766766089538	-2.268514668288352	CTGCAATTCTAGTGGTG
chr6	28865416	28865417	chr6:28865417:T:C	rs111951114	T	C	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr6	29514170	29514171	chr6:29514171:G:A	rs1010409	G	A	A	Sox3.mouse_HMG_2	8	1	-	2.3003660737292364	3.5547880398849054	AGCCAATGCCAGTGTTT
chr6	29579687	29579688	chr6:29579688:A:G	rs113663086	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr6	29663966	29663967	chr6:29663967:C:T	rs3130252	C	T	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr6	29726160	29726161	chr6:29726161:G:A	rs2735061	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr6	29726191	29726192	chr6:29726192:C:T	rs1736922	C	T	C	Sox3.mouse_HMG_2	1	1	-	3.5756092693890107	5.581997211408465	GGGCACTGTCAGTGATT
chr6	29734428	29734429	chr6:29734429:C:G	rs2844833	C	G	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr6	29738350	29738351	chr6:29738351:G:C	rs2523389	G	C	g	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	29750577	29750578	chr6:29750578:A:C	rs909729	A	C	a	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr6	29750605	29750606	chr6:29750606:G:A	rs1610733	G	A	a	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr6	29756423	29756424	chr6:29756424:C:G	rs1633069	C	G	c	Sox3.mouse_HMG_2	16	1	+	7.319320747950756	8.558592107977262	GAACAATTTTATTCATC
chr6	29769899	29769900	chr6:29769900:T:C	rs2844843	T	C	t	Sox3.mouse_HMG_2	11	1	+	2.654584530609607	-4.029789668850729	GATCATTTTCATTGCAT
chr6	29792107	29792108	chr6:29792108:G:A	rs1611208	G	A	-	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr6	29792145	29792146	chr6:29792146:T:C	rs1611209	T	C	-	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr6	29861818	29861819	chr6:29861819:A:G	rs3128906	A	G	-	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr6	29909222	29909223	chr6:29909223:A:G	rs1632923	A	G	-	Sox3.mouse_HMG_2	15	1	-	3.8362856872367397	0.05648626973094378	CCTCAATGTTGATGATT
chr6	29909245	29909246	chr6:29909246:G:C	rs2571399	G	C	-	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr6	29954295	29954296	chr6:29954296:A:T	rs5027910	A	T	-	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr6	29997528	29997529	chr6:29997529:C:T	rs9261016	C	T	-	Sox3.mouse_HMG_2	14	1	-	1.727485896256404	5.0455521660280045	CGTCAATGGTAGGGGCT
chr6	30062357	30062358	chr6:30062358:G:A	rs9261270	G	A	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr6	30062411	30062412	chr6:30062412:T:A	rs9261271	T	A	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr6	30143700	30143701	chr6:30143701:T:C	rs9261499	T	C	T	Sox3.mouse_HMG_2	2	1	+	5.162683104867556	-1.204214201658187	TTTCAATTCTAATGAGT
chr6	30143709	30143710	chr6:30143710:A:G	rs9261500	A	G	A	Sox3.mouse_HMG_2	11	1	+	5.162683104867556	9.734167233200843	TTTCAATTCTAATGAGT
chr6	30187330	30187331	chr6:30187331:C:T	rs6457164	C	T	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr6	30732719	30732720	chr6:30732720:A:G	rs9262155	A	G	A	Sox3.mouse_HMG_2	12	1	-	3.293087016573493	-2.757880121357323	CATCACATGTATTGATG
chr6	30735645	30735646	chr6:30735646:C:A	rs75676434	C	A	-	Sox3.mouse_HMG_2	16	1	-	4.142405124189442	4.506126813823387	TATCTATTTTATTTATG
chr6	30781926	30781927	chr6:30781927:C:T	rs751234149	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr6	30781934	30781935	chr6:30781935:T:G	rs9468830	T	G	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr6	30801700	30801701	chr6:30801701:T:C	rs3129988	T	C	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr6	30911141	30911142	chr6:30911142:T:C	rs2074512	T	C	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr6	30926981	30926982	chr6:30926982:G:A	rs2532934	G	A	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr6	31012015	31012016	chr6:31012016:G:A	rs9366764	G	A	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr6	31170694	31170695	chr6:31170695:C:T	rs17197199	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr6	31171353	31171354	chr6:31171354:T:C	rs17197220	T	C	T	Sox3.mouse_HMG_2	2	1	+	6.359690637202084	-0.007206669323660819	CCTCAAATTTATTGAAT
chr6	31240106	31240107	chr6:31240107:A:G	rs3869120	A	G	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr6	31245724	31245725	chr6:31245725:G:A	rs2394897	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	31260326	31260327	chr6:31260327:A:G	rs9264352	A	G	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr6	31266280	31266281	chr6:31266281:A:G	rs9264528	A	G	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr6	31293443	31293444	chr6:31293444:G:A	rs75652792	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr6	31384853	31384854	chr6:31384854:A:G	rs7741091	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr6	31430843	31430844	chr6:31430844:A:G	rs4090417	A	G	-	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr6	31439342	31439343	chr6:31439343:A:T	rs3749935	A	T	-	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr6	31489826	31489827	chr6:31489827:A:G	rs3130917	A	G	-	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr6	31489871	31489872	chr6:31489872:C:T	rs3130918	C	T	-	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr6	31489878	31489879	chr6:31489879:A:G	rs140543080	A	G	-	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr6	31565828	31565829	chr6:31565829:C:T	rs2857708	C	T	C	Sox3.mouse_HMG_2	8	1	-	3.5077970858015486	2.2890067010570516	TGGCAGTGGCATTGATG
chr6	31727081	31727082	chr6:31727082:C:T	rs45565837	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr6	31727659	31727660	chr6:31727660:G:A	rs138907940	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr6	31781042	31781043	chr6:31781043:G:A	rs707926	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr6	32038226	32038227	chr6:32038227:T:C	rs11449852	T	C	T	Sox3.mouse_HMG_2	6	1	+	8.803790023428855	2.414508589050963	GATCAATTTTTTTGAAA
chr6	32079658	32079659	chr6:32079659:C:G	rs204877	C	G	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr6	32271649	32271650	chr6:32271650:G:A	rs3115558	G	A	g	Sox3.mouse_HMG_2	16	1	-	3.6862057453107147	5.289198794971165	TTTCAATTTCATTTAGC
chr6	32379971	32379972	chr6:32379972:A:G	rs9268446	A	G	a	Sox3.mouse_HMG_2	1	1	-	7.608636099925654	7.588418122635009	GTTCAATTTGATTGAAT
chr6	32526813	32526814	chr6:32526814:T:C	rs112158862	T	C	.	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr6	32586667	32586668	chr6:32586668:G:A	rs9270094	G	A	.	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr6	32639675	32639676	chr6:32639676:C:T	rs9272583	C	T	.	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr6	32682455	32682456	chr6:32682456:T:C	rs9275122	T	C	t	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr6	32682490	32682491	chr6:32682491:T:C	rs2516006	T	C	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr6	32692044	32692045	chr6:32692045:G:T	rs2856673	G	T	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr6	32694255	32694256	chr6:32694256:A:G	rs72844346	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr6	32725004	32725005	chr6:32725005:C:T	rs9275928	C	T	T	Sox3.mouse_HMG_2	7	1	-	5.8622630597255	-0.7665584353625573	TATCAATGTCATTTGAG
chr6	32729344	32729345	chr6:32729345:T:C	rs2859121	T	C	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr6	32868216	32868217	chr6:32868217:T:C	rs115074026	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr6	32868981	32868982	chr6:32868982:C:T	rs9276834	C	T	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr6	32887905	32887906	chr6:32887906:C:T	rs6457689	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr6	32887939	32887940	chr6:32887940:G:A	rs6457690	G	A	A	Sox3.mouse_HMG_2	1	1	-	4.403872343669063	4.424090320959707	CCTCATTTTTAGTGAAA
chr6	32957812	32957813	chr6:32957813:T:G	rs35546426	T	G	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr6	33072202	33072203	chr6:33072203:A:G	rs72500562	A	G	a	Sox3.mouse_HMG_2	8	1	-	1.5483993077320286	0.2939773415763584	GGTCAAATTCAGTGGGT
chr6	33272728	33272729	chr6:33272729:A:G	rs464921	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	33384713	33384714	chr6:33384714:A:T	rs1429575612	A	T	a	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr6	33601979	33601980	chr6:33601980:G:A	rs565654	G	A	A	Sox3.mouse_HMG_2	3	1	-	4.641131960716138	-0.21572391450608314	AATCAATTATTTTGAGA
chr6	33607231	33607232	chr6:33607232:G:A	rs444697	G	A	G	Sox3.mouse_HMG_2	11	1	+	3.268114007201399	-1.303370121131886	AATGAATCTCAGTGATT
chr6	33692410	33692411	chr6:33692411:T:C	rs4711338	T	C	C	Sox3.mouse_HMG_2	2	1	+	3.972215655160877	-2.394681651364867	CATCAATGTTAGGGGCA
chr6	33692441	33692442	chr6:33692442:C:T	rs113640642	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr6	33793381	33793382	chr6:33793382:A:G	rs7755323	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr6	33858792	33858793	chr6:33858793:G:A	rs4713696	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr6	34011035	34011036	chr6:34011036:A:T	rs73744976	A	T	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr6	34055632	34055633	chr6:34055633:G:A	rs565659861	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	34098704	34098705	chr6:34098705:G:A	rs77652361	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.2170579830398354	-3.8345805211464756	GATAAAAGCCAGTGATG
chr6	34160312	34160313	chr6:34160313:C:A	rs9368797	C	A	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr6	34160324	34160325	chr6:34160325:T:C	rs75293058	T	C	T	Sox3.mouse_HMG_2	10	1	-	6.268568540645728	-0.6401862386694915	ACACAATGTCAGTGGTG
chr6	34282424	34282425	chr6:34282425:T:C	rs12654	T	C	c	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr6	34415350	34415351	chr6:34415351:A:T	rs1324894208	A	T	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr6	34467354	34467355	chr6:34467355:C:A	rs7773446	C	A	C	Sox3.mouse_HMG_2	1	1	-	2.0365673518685954	1.3477317348347573	GGGCAATGACAGAGATG
chr6	34926851	34926852	chr6:34926852:T:G	rs559422541	T	G	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr6	35394338	35394339	chr6:35394339:A:G	rs139276511	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.426415689371782	-2.962865745006107	GATCCATGTCATGGAAT
chr6	35415645	35415646	chr6:35415646:G:A	rs78609397	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	35495372	35495373	chr6:35495373:C:A	rs114753628	C	A	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr6	35495424	35495425	chr6:35495425:G:T	rs7744287	G	T	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr6	35602837	35602838	chr6:35602838:G:T	rs916772590	G	T	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr6	35611224	35611225	chr6:35611225:A:G	rs3777747	A	G	A	Sox3.mouse_HMG_2	12	1	-	3.27909952869402	-2.771867609236797	GATCAATAATAGTGCTG
chr6	35611461	35611462	chr6:35611462:A:C	chr6:35611462:A:C	A	C	A	Sox3.mouse_HMG_2	16	1	-	4.707204256960884	4.343482567326938	TGTCAACTTTAGTGGTT
chr6	35811237	35811238	chr6:35811238:C:T	rs116714321	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr6	36119198	36119199	chr6:36119199:A:C	rs11759192	A	C	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr6	36248394	36248395	chr6:36248395:C:T	rs74913143	C	T	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr6	36362735	36362736	chr6:36362736:C:T	rs12190328	C	T	c	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr6	36547811	36547812	chr6:36547812:C:T	rs541669384	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr6	36547829	36547830	chr6:36547830:C:T	rs139453784	C	T	c	Sox3.mouse_HMG_2	1	1	-	5.899790298601797	7.906178240621253	AGTTAATTGTATTGGTT
chr6	36730382	36730383	chr6:36730383:G:A	rs236463	G	A	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr6	36751932	36751933	chr6:36751933:G:A	rs78720743	G	A	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr6	36828029	36828030	chr6:36828030:G:A	rs753581000	G	A	G	Sox3.mouse_HMG_2	11	1	+	2.7368886249041324	-1.834595503429153	ATTCAGTGGCAGTGAGA
chr6	37177879	37177880	chr6:37177880:A:G	rs139855099	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr6	37362262	37362263	chr6:37362263:T:C	rs111294277	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr6	37374143	37374144	chr6:37374144:A:G	rs169005	A	G	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr6	37559721	37559722	chr6:37559722:G:T	rs9369007	G	T	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	37657309	37657310	chr6:37657310:G:A	rs6930085	G	A	G	Sox3.mouse_HMG_2	3	1	-	2.9048144691069755	-1.9520414061152458	TGTCAATGCCTGTGACT
chr6	37823053	37823054	chr6:37823054:G:A	rs78437964	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr6	37915003	37915004	chr6:37915004:G:A	rs259678	G	A	A	Sox3.mouse_HMG_2	8	1	-	5.434145133692343	6.688567099848013	TCTCAATGCCAATGAAA
chr6	37941307	37941308	chr6:37941308:G:A	rs2842510	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr6	38136076	38136077	chr6:38136077:G:A	rs73421866	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr6	38554990	38554991	chr6:38554991:T:C	rs7743871	T	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr6	38763125	38763126	chr6:38763126:A:G	rs72849135	A	G	A	Sox3.mouse_HMG_2	12	1	-	4.530829460564873	-1.5201376773659423	TTATAATTTCAGTGATG
chr6	39018387	39018388	chr6:39018388:T:C	rs7766930	T	C	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr6	39068059	39068060	chr6:39068060:A:C	rs7766275	A	C	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr6	39272242	39272243	chr6:39272243:G:A	rs2815027	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr6	39274655	39274656	chr6:39274656:A:G	rs2815036	A	G	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	39400882	39400883	chr6:39400883:T:C	rs75594135	T	C	T	Sox3.mouse_HMG_2	1	1	-	2.7657029927460552	0.759315050726598	CATCAAGTGTATTGTCT
chr6	39424941	39424942	chr6:39424942:T:A	rs4142117	T	A	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr6	39922522	39922523	chr6:39922523:A:C	rs2984659	A	C	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr6	39994167	39994168	chr6:39994168:G:A	rs2263328	G	A	G	Sox3.mouse_HMG_2	9	1	-	1.7859781321998784	2.478630675071837	CATCAAGGGCCTTGAAT
chr6	40336963	40336964	chr6:40336964:G:A	rs9296331	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr6	40386266	40386267	chr6:40386267:A:G	rs6458154	A	G	G	Sox3.mouse_HMG_2	3	1	+	4.24991057049358	5.10006149986319	TATAAATGTTAGTGCTG
chr6	40636476	40636477	chr6:40636477:C:T	rs9367067	C	T	T	Sox3.mouse_HMG_2	2	1	-	3.409646804193521	5.281864695089875	CCGCAGTGTTAGTGATG
chr6	40671075	40671076	chr6:40671076:T:C	rs114369108	T	C	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr6	40678665	40678666	chr6:40678666:A:T	rs17630115	A	T	A	Sox3.mouse_HMG_2	1	1	+	10.151280911023507	7.456057351970209	CATCAATGCTAGAGATA
chr6	41209196	41209197	chr6:41209197:A:G	rs4714434	A	G	N	Sox3.mouse_HMG_2	16	1	+	4.608531512332162	4.820105938817412	CATGAATGGAAGTGATA
chr6	41230118	41230119	chr6:41230119:C:T	rs7769759	C	T	-	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr6	41256456	41256457	chr6:41256457:A:G	rs2395769	A	G	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr6	41256488	41256489	chr6:41256489:C:A	rs144935500	C	A	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr6	41273202	41273203	chr6:41273203:A:G	rs17644657	A	G	A	Sox3.mouse_HMG_2	4	1	+	4.297565617579843	-2.0917158167980463	GGGCAGTGGCATTGATG
chr6	41355945	41355946	chr6:41355946:C:T	rs9381053	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr6	41413361	41413362	chr6:41413362:C:G	rs56272207	C	G	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr6	41523486	41523487	chr6:41523487:C:T	rs2477844	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	41670962	41670963	chr6:41670963:T:C	rs6909657	T	C	T	Sox3.mouse_HMG_2	16	1	+	2.425699911066291	0.8227068614058402	TGCCAATGTCAGTGGGT
chr6	41832890	41832891	chr6:41832891:T:C	rs9381094	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr6	41871699	41871700	chr6:41871700:T:G	rs2251274	T	G	G	Sox3.mouse_HMG_2	12	1	+	4.996572604881129	-1.3900160677905866	AAGCAATTTCATTAATT
chr6	41893742	41893743	chr6:41893743:T:A	rs114079336	T	A	T	Sox3.mouse_HMG_2	4	1	-	1.646012776325768	-5.262062451467287	CTTCATTGCTTTTGATT
chr6	41936570	41936571	chr6:41936571:A:G	chr6:41936571:A:G	A	G	A	Sox3.mouse_HMG_2	10	1	+	5.397393579109921	-1.5113612002052983	CTTCAGTGCCAGTGATC
chr6	41936585	41936586	chr6:41936586:C:G	rs11552780	C	G	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr6	42047965	42047966	chr6:42047966:G:A	rs77303819	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr6	42167176	42167177	chr6:42167177:G:T	rs57668268	G	T	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr6	42224822	42224823	chr6:42224823:C:A	rs6458278	C	A	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr6	42276672	42276673	chr6:42276673:T:C	rs34491635	T	C	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	42447085	42447086	chr6:42447086:C:A	rs72859314	C	A	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr6	43294965	43294966	chr6:43294966:A:T	rs16896398	A	T	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr6	43714941	43714942	chr6:43714942:G:C	rs9381247	G	C	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr6	43737654	43737655	chr6:43737655:T:C	rs59636079	T	C	T	Sox3.mouse_HMG_2	4	1	-	1.4021687641276226	-4.987112670250267	CCACAGTGGCAGTGAGT
chr6	43766868	43766869	chr6:43766869:C:T	rs9381248	C	T	C	Sox3.mouse_HMG_2	4	1	+	3.1293742715687856	3.1293742715687856	CTTCCATTGCAGTGAAG
chr6	43947835	43947836	chr6:43947836:C:T	rs190768973	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr6	44541715	44541716	chr6:44541716:G:A	rs6918083	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr6	44542273	44542274	chr6:44542274:A:G	rs1998402	A	G	G	Sox3.mouse_HMG_2	14	1	+	2.007490660076822	-1.3105756096947794	GCTCAAGGGTTTTGATG
chr6	44607558	44607559	chr6:44607559:T:C	rs73737027	T	C	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr6	44635764	44635765	chr6:44635765:G:A	rs6922821	G	A	G	Sox3.mouse_HMG_2	1	1	-	3.2391126990904255	3.259330676381071	TCTCCATGCCAGTGAGT
chr6	45082257	45082258	chr6:45082258:G:T	rs112826330	G	T	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr6	45132586	45132587	chr6:45132587:G:A	rs1285005	G	A	A	Sox3.mouse_HMG_2	13	1	+	7.9965455612774505	1.9449070570911384	TTGCAATTTTAGTGATA
chr6	45132592	45132593	chr6:45132593:T:C	rs56283067	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr6	45224284	45224285	chr6:45224285:T:A	rs17288250	T	A	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr6	45880346	45880347	chr6:45880347:T:C	rs1025414408	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.652784131113442	-1.7364973032644488	TTACAATGGTGTTGATA
chr6	45947193	45947194	chr6:45947194:T:C	rs11757345	T	C	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr6	46220016	46220017	chr6:46220017:A:T	rs2799355	A	T	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr6	46323575	46323576	chr6:46323576:A:G	rs569184844	A	G	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr6	46323602	46323603	chr6:46323603:A:G	rs9472739	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	46323613	46323614	chr6:46323614:A:G	rs188788696	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr6	46769348	46769349	chr6:46769349:A:C	rs34746118	A	C	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr6	46777747	46777748	chr6:46777748:C:A	rs79192783	C	A	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr6	46825437	46825438	chr6:46825438:G:A	rs6920863	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr6	46961868	46961869	chr6:46961869:T:C	rs1889578	T	C	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	46964045	46964046	chr6:46964046:T:C	rs9472935	T	C	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr6	47153185	47153186	chr6:47153186:A:G	rs115423236	A	G	A	Sox3.mouse_HMG_2	14	1	+	10.411502968504223	7.093436698732621	CAACAATTGTATTGACT
chr6	47242692	47242693	chr6:47242693:G:A	rs113630792	G	A	G	Sox3.mouse_HMG_2	7	1	+	7.147258804441537	0.518437309353481	CATCAACGGTAGTGGTG
chr6	47519221	47519222	chr6:47519222:A:G	rs1385741	A	G	A	Sox3.mouse_HMG_2	2	1	+	4.228029892365434	2.3558120014690807	GGAAAATGACATTGATA
chr6	47520650	47520651	chr6:47520651:G:A	rs7745990	G	A	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr6	47774172	47774173	chr6:47774173:T:G	rs1312208801	T	G	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr6	48611333	48611334	chr6:48611334:T:A	rs6927467	T	A	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	48706979	48706980	chr6:48706980:G:A	rs10484857	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr6	48917360	48917361	chr6:48917361:A:G	rs12190836	A	G	A	Sox3.mouse_HMG_2	3	1	-	6.055760920550097	10.912616795772324	AATTAATGTCATTAATG
chr6	49326104	49326105	chr6:49326105:G:C	rs7450140	G	C	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr6	49713297	49713298	chr6:49713298:C:T	rs360544	C	T	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr6	49781864	49781865	chr6:49781865:T:C	rs360550	T	C	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr6	50188035	50188036	chr6:50188036:C:T	rs1340840	C	T	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr6	50355138	50355139	chr6:50355139:T:G	rs9349536	T	G	G	Sox3.mouse_HMG_2	2	1	-	2.9533083663139186	-0.13193216442829048	AAACAATGGTATAGGTC
chr6	50602675	50602676	chr6:50602676:T:C	rs562247	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr6	50602680	50602681	chr6:50602681:C:A	rs562219	C	A	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr6	50816274	50816275	chr6:50816275:C:G	rs2143079	C	G	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr6	50946010	50946011	chr6:50946011:C:G	rs569384	C	G	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr6	51262050	51262051	chr6:51262051:G:T	rs2504691	G	T	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr6	51541971	51541972	chr6:51541972:G:C	chr6:51541972:G:C	G	C	G	Sox3.mouse_HMG_2	3	1	-	8.263905572429039	2.21338626253974	CAGCAATGCCAGTGAAG
chr6	51640518	51640519	chr6:51640519:A:G	rs1819565	A	G	A	Sox3.mouse_HMG_2	6	1	-	4.00816123783002	-2.381120196547872	TGTCAATTGCATTTGTA
chr6	51640538	51640539	chr6:51640539:T:A	rs1819564	T	A	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr6	51857598	51857599	chr6:51857599:T:C	rs141894699	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr6	52075313	52075314	chr6:52075314:A:G	chr6:52075314:A:G	A	G	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr6	52338070	52338071	chr6:52338071:C:T	rs74542499	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr6	52539011	52539012	chr6:52539012:T:C	rs2268729	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr6	52539022	52539023	chr6:52539023:T:C	rs78274921	T	C	T	Sox3.mouse_HMG_2	11	1	-	7.070009974205446	11.641494102538731	ATTCAATGTTAATGAAT
chr6	52567153	52567154	chr6:52567154:T:C	rs114222863	T	C	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr6	52716355	52716356	chr6:52716356:C:T	rs77908564	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr6	52779188	52779189	chr6:52779189:G:C	rs9395819	G	C	-	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr6	53031572	53031573	chr6:53031573:C:T	rs222455	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr6	53042486	53042487	chr6:53042487:G:A	rs115214880	G	A	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr6	53066117	53066118	chr6:53066118:G:C	chr6:53066118:G:C	G	C	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr6	53125207	53125208	chr6:53125208:A:G	rs4077047	A	G	A	Sox3.mouse_HMG_2	15	1	-	4.097281881174791	0.3174824636689951	AAACTATTATATTGATA
chr6	53483918	53483919	chr6:53483919:A:G	rs73439625	A	G	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr6	53551254	53551255	chr6:53551255:T:C	rs11758818	T	C	T	Sox3.mouse_HMG_2	4	1	-	3.8838731223659066	-2.505408312011983	TTTCAATGTTAATGCTG
chr6	53796976	53796977	chr6:53796977:T:C	rs35971619	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr6	53809436	53809437	chr6:53809437:G:A	rs9382240	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr6	53809485	53809486	chr6:53809486:C:T	rs4475321	C	T	c	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr6	53989394	53989395	chr6:53989395:G:A	rs55680514	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr6	54046857	54046858	chr6:54046858:T:C	rs16884643	T	C	t	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr6	55400222	55400223	chr6:55400223:A:G	rs1502199	A	G	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr6	55426391	55426392	chr6:55426392:C:T	rs12211679	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr6	55605875	55605876	chr6:55605876:C:T	rs7742169	C	T	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr6	55678545	55678546	chr6:55678546:T:C	rs9357872	T	C	C	Sox3.mouse_HMG_2	5	1	-	3.9595638800689406	-2.429717554308948	GCTCAATATCAGTGAGC
chr6	55851361	55851362	chr6:55851362:C:T	rs3823038	C	T	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr6	55877978	55877979	chr6:55877979:G:C	rs10485078	G	C	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr6	56046015	56046016	chr6:56046016:G:C	rs2745750	G	C	C	Sox3.mouse_HMG_2	3	1	-	2.9615874566812055	-3.0889318532080914	GTTCAATATTAGAGATT
chr6	56076235	56076236	chr6:56076236:C:G	rs12216538	C	G	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr6	56076245	56076246	chr6:56076246:T:G	rs12196670	T	G	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr6	56200094	56200095	chr6:56200095:A:G	rs76948360	A	G	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr6	56220450	56220451	chr6:56220451:T:G	rs9382595	T	G	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr6	56289602	56289603	chr6:56289603:A:T	rs74403309	A	T	A	Sox3.mouse_HMG_2	14	1	+	3.385326182446247	-0.6340553413023986	GATAAATGCCCTTGATA
chr6	56329183	56329184	chr6:56329184:A:G	rs9382619	A	G	A	Sox3.mouse_HMG_2	3	1	-	6.800594032101415	11.657449907323638	TAATAATGATAGTGATA
chr6	56541149	56541150	chr6:56541150:A:G	rs112899542	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr6	56542308	56542309	chr6:56542309:C:T	rs62412509	C	T	C	Sox3.mouse_HMG_2	8	1	+	5.7631594836676125	7.017581449823282	CTTCAATGCTATTCAGA
chr6	56842152	56842153	chr6:56842153:A:T	rs36094082	A	T	T	Sox3.mouse_HMG_2	15	1	-	7.1803747716485	4.876985078189816	ACTCAATGTCAGTAATT
chr6	56867394	56867395	chr6:56867395:T:C	rs16888192	T	C	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr6	58059551	58059552	chr6:58059552:G:A	rs4928437	G	A	g	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr6	62480085	62480086	chr6:62480086:G:C	rs62416846	G	C	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr6	62641067	62641068	chr6:62641068:G:T	rs2782384	G	T	T	Sox3.mouse_HMG_2	0	1	-	4.205200176449125	2.8133414002706516	CTTTAATGTCATTTATA
chr6	63000053	63000054	chr6:63000054:T:A	rs7750310	T	A	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr6	63609265	63609266	chr6:63609266:A:G	rs11757655	A	G	A	Sox3.mouse_HMG_2	9	1	-	6.435818534722793	5.743165991850834	GATCAATGATGTTGAGC
chr6	64016440	64016441	chr6:64016441:T:C	rs62415275	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr6	64034780	64034781	chr6:64034781:T:C	rs140498679	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr6	64325020	64325021	chr6:64325021:C:T	rs647367	C	T	T	Sox3.mouse_HMG_2	11	1	-	8.782497167217626	4.2110130388843405	GGGCAATTTCAGTGATA
chr6	64325045	64325046	chr6:64325046:G:C	rs647342	G	C	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr6	64591273	64591274	chr6:64591274:C:T	rs62415825	C	T	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr6	64591317	64591318	chr6:64591318:T:C	rs62415826	T	C	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr6	64591323	64591324	chr6:64591324:G:A	rs62415827	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr6	64830132	64830133	chr6:64830133:C:T	rs62415509	C	T	c	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr6	64957397	64957398	chr6:64957398:A:G	rs9360101	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr6	65730252	65730253	chr6:65730253:T:C	rs72887832	T	C	T	Sox3.mouse_HMG_2	0	1	+	3.847422127625117	4.332557141879225	TATCAGTGTTATTTAAT
chr6	65837920	65837921	chr6:65837921:C:A	rs115310609	C	A	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr6	66081295	66081296	chr6:66081296:G:T	rs3912417	G	T	g	Sox3.mouse_HMG_2	13	1	-	3.777881945494356	4.113503480235256	AGTCAATGCTATTCTTA
chr6	66086479	66086480	chr6:66086480:A:C	rs207099	A	C	a	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	66662906	66662907	chr6:66662907:G:T	rs12527276	G	T	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr6	66662950	66662951	chr6:66662951:G:A	rs56092811	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr6	67795445	67795446	chr6:67795446:A:T	rs12200076	A	T	A	Sox3.mouse_HMG_2	14	1	+	5.350477186861627	1.331095663112982	CATAAATGGGATTGATG
chr6	68252942	68252943	chr6:68252943:G:T	rs6931224	G	T	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	68858840	68858841	chr6:68858841:G:T	rs518704	G	T	T	Sox3.mouse_HMG_2	3	1	-	2.633476830978976	-4.2671934082799305	AAACAATGGTTTTGTTG
chr6	69385797	69385798	chr6:69385798:C:T	rs1952435	C	T	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr6	69797315	69797316	chr6:69797316:C:T	rs141825704	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr6	69854839	69854840	chr6:69854840:T:C	rs2502572	T	C	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr6	69854841	69854842	chr6:69854842:T:C	rs2502571	T	C	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr6	70211685	70211686	chr6:70211686:G:A	rs997953	G	A	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr6	70887627	70887628	chr6:70887628:G:A	rs684463	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr6	71033203	71033204	chr6:71033204:T:C	rs6929275	T	C	t	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr6	71339204	71339205	chr6:71339205:T:C	rs828649	T	C	C	Sox3.mouse_HMG_2	10	1	-	5.686743147526008	-1.2220116317892133	AATCAGTTGCATTGAGA
chr6	71444628	71444629	chr6:71444629:G:A	rs9360453	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr6	71570172	71570173	chr6:71570173:A:G	rs12207816	A	G	A	Sox3.mouse_HMG_2	14	1	+	2.953694954453306	-0.3643713153182951	AGACAATTTTGGTGATG
chr6	71733665	71733666	chr6:71733666:G:A	rs1204331	G	A	G	Sox3.mouse_HMG_2	13	1	+	3.2084556729240203	-2.843182831262292	AATAAATGGTATTGGCT
chr6	72023646	72023647	chr6:72023647:C:T	rs489348	C	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr6	72042226	72042227	chr6:72042227:G:A	rs67474538	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr6	72042244	72042245	chr6:72042245:A:G	rs72931435	A	G	G	Sox3.mouse_HMG_2	12	1	-	3.7654518546837648	-2.285515283247052	TCTCAACTGTAGTGAGT
chr6	72205308	72205309	chr6:72205309:T:C	rs72937865	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr6	72652526	72652527	chr6:72652527:T:A	rs4707980	T	A	T	Sox3.mouse_HMG_2	5	1	-	4.550866566278118	-2.3572086615149384	GCTCAATTCTAGGGAAT
chr6	72715425	72715426	chr6:72715426:G:A	rs61075759	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr6	72790273	72790274	chr6:72790274:C:G	rs6453605	C	G	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr6	72834932	72834933	chr6:72834933:A:T	rs2796007	A	T	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	72872263	72872264	chr6:72872264:A:G	rs9351949	A	G	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr6	73056089	73056090	chr6:73056090:C:G	rs1935541	C	G	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	73181337	73181338	chr6:73181338:A:G	rs3799285	A	G	G	Sox3.mouse_HMG_2	5	1	+	3.7503575480032247	-2.6389238863746622	TATTAATCCCAGTGATG
chr6	73462185	73462186	chr6:73462186:C:A	rs745911886	C	A	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr6	73523466	73523467	chr6:73523467:T:C	rs185265553	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr6	73523467	73523468	chr6:73523468:A:G	rs57226222	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr6	73615533	73615534	chr6:73615534:T:C	rs628038	T	C	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr6	73885543	73885544	chr6:73885544:C:T	rs73466404	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr6	74459547	74459548	chr6:74459548:T:C	rs9352125	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr6	74654512	74654513	chr6:74654513:T:C	rs2485091	T	C	T	Sox3.mouse_HMG_2	2	1	+	3.4975987938718407	-2.869298512653902	TATGAATGCCAGTAATT
chr6	74654543	74654544	chr6:74654544:T:G	rs62438603	T	G	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr6	74732749	74732750	chr6:74732750:C:T	rs4260730	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr6	75297160	75297161	chr6:75297161:A:G	rs16886430	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.8716845389104884	-2.812689660549847	TCTTCATGTTATTGATA
chr6	75482327	75482328	chr6:75482328:A:G	rs10806039	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.521514951819365	0.1322335174414755	ATTCAATGGTATTCATC
chr6	76225982	76225983	chr6:76225983:T:G	rs2314707	T	G	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr6	76385213	76385214	chr6:76385214:A:G	rs2451546	A	G	A	Sox3.mouse_HMG_2	6	1	-	2.041789047966076	-4.347492386411815	GGCCAATGTGATTGGTT
chr6	76697181	76697182	chr6:76697182:T:A	rs9294019	T	A	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr6	76733507	76733508	chr6:76733508:G:A	rs9447764	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr6	77546095	77546096	chr6:77546096:T:C	rs1778268	T	C	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr6	77559198	77559199	chr6:77559199:T:C	rs1343492	T	C	T	Sox3.mouse_HMG_2	5	1	-	6.208548974411999	-0.18073245996589066	TCTCAATGTGATTGTTT
chr6	77634126	77634127	chr6:77634127:A:C	rs16889263	A	C	C	Sox3.mouse_HMG_2	16	1	-	2.3526069144567043	1.9888852248227586	ATTCAAGGCCAGTGAGT
chr6	77681360	77681361	chr6:77681361:C:T	rs13197085	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr6	78005108	78005109	chr6:78005109:A:G	rs189985186	A	G	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr6	78154047	78154048	chr6:78154048:T:G	rs73475056	T	G	T	Sox3.mouse_HMG_2	16	1	-	2.9944357495100253	1.9667388159687706	AGTCAATTGCATTGCCA
chr6	78243528	78243529	chr6:78243529:G:A	rs6911371	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr6	78263483	78263484	chr6:78263484:A:G	rs818249	A	G	G	Sox3.mouse_HMG_2	2	1	-	8.058298282907245	1.6914009763815008	TGTCAATGTAATTGAAA
chr6	78442471	78442472	chr6:78442472:G:T	rs10455348	G	T	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr6	78483979	78483980	chr6:78483980:T:A	rs60686856	T	A	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr6	79302830	79302831	chr6:79302831:G:C	rs2322222	G	C	G	Sox3.mouse_HMG_2	0	1	+	2.745375593308084	2.4407420757838962	GATCATTTGCAGAGATT
chr6	79711815	79711816	chr6:79711816:A:T	rs2812721	A	T	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	79840298	79840299	chr6:79840299:T:C	rs58131569	T	C	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr6	79894710	79894711	chr6:79894711:C:A	rs16891209	C	A	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr6	79949075	79949076	chr6:79949076:A:C	rs1512120	A	C	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr6	79949100	79949101	chr6:79949101:C:A	rs527950344	C	A	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr6	80129534	80129535	chr6:80129535:G:T	rs2505932	G	T	t	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr6	80259384	80259385	chr6:80259385:A:T	rs669420	A	T	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr6	80690716	80690717	chr6:80690717:C:G	rs7749684	C	G	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr6	80872353	80872354	chr6:80872354:C:T	rs16892314	C	T	C	Sox3.mouse_HMG_2	6	1	-	4.918044786974225	4.918044786974225	GAGCAAGGTTATTGAGT
chr6	80872594	80872595	chr6:80872595:G:A	rs62423506	G	A	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr6	81238197	81238198	chr6:81238198:C:G	rs9361775	C	G	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr6	81367342	81367343	chr6:81367343:A:C	rs1343243	A	C	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr6	81459661	81459662	chr6:81459662:C:G	rs73749117	C	G	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr6	81466124	81466125	chr6:81466125:C:G	rs1923153	C	G	G	Sox3.mouse_HMG_2	14	1	-	5.647491839964376	2.9330294921473326	CTTGAATTTTATTGGTA
chr6	81466144	81466145	chr6:81466145:C:A	rs78715319	C	A	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr6	81561130	81561131	chr6:81561131:C:T	chr6:81561131:C:T	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr6	81561135	81561136	chr6:81561136:T:A	rs7739492	T	A	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr6	81617859	81617860	chr6:81617860:A:G	rs1276882	A	G	A	Sox3.mouse_HMG_2	9	1	-	3.8914724653208466	3.198819922448888	ACTCAATTATAATGAAT
chr6	81617870	81617871	chr6:81617871:C:T	rs1322895	C	T	c	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	81714878	81714879	chr6:81714879:A:G	rs194898	A	G	A	Sox3.mouse_HMG_2	11	1	-	11.007126886864492	4.322752687404156	TGACAATTGCATTGATT
chr6	81810759	81810760	chr6:81810760:A:C	rs1931629	A	C	A	Sox3.mouse_HMG_2	11	1	-	2.2021426773772714	0.8216204999634465	GGTCAATGACATTTCTG
chr6	81838261	81838262	chr6:81838262:A:G	rs574685827	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr6	81845963	81845964	chr6:81845964:C:T	rs6926755	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	81962437	81962438	chr6:81962438:A:G	rs185603259	A	G	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr6	81969342	81969343	chr6:81969343:A:T	rs10806232	A	T	T	Sox3.mouse_HMG_2	5	1	+	5.2535186203594275	-1.6545566074336295	CTTCAAATTCATTGAGT
chr6	82046136	82046137	chr6:82046137:G:A	rs1342194	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr6	82066308	82066309	chr6:82066309:A:G	rs1984189	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr6	82872398	82872399	chr6:82872399:A:G	rs770640904	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr6	82877642	82877643	chr6:82877643:T:C	rs9361982	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.173250807003305	-2.2160306273745842	TATGAATGCCATTGTGT
chr6	83265809	83265810	chr6:83265810:C:T	rs34326691	C	T	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr6	83279141	83279142	chr6:83279142:T:C	rs1145917	T	C	T	Sox3.mouse_HMG_2	4	1	-	5.615949248591221	-0.7733321857866686	CTTCAGTGTCATTGTTT
chr6	83294793	83294794	chr6:83294794:G:A	rs145777697	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	83479677	83479678	chr6:83479678:A:T	rs4707000	A	T	A	Sox3.mouse_HMG_2	15	1	-	4.482297694884988	2.1789080014263025	TTACAATGGCATGGATA
chr6	84448490	84448491	chr6:84448491:A:C	rs9449914	A	C	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr6	84479465	84479466	chr6:84479466:C:T	rs9353189	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr6	84605493	84605494	chr6:84605494:C:A	rs11968722	C	A	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr6	84605534	84605535	chr6:84605535:G:C	rs34848373	G	C	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr6	84815979	84815980	chr6:84815980:A:G	rs9450046	A	G	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr6	84977394	84977395	chr6:84977395:G:A	chr6:84977395:G:A	G	A	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr6	84977418	84977419	chr6:84977419:G:C	rs16875388	G	C	G	Sox3.mouse_HMG_2	13	1	+	5.6912643118358055	-0.6959957270914066	ACTCAATGCTATTGTGC
chr6	85078288	85078289	chr6:85078289:C:T	rs12529749	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr6	85097158	85097159	chr6:85097159:G:T	rs116994892	G	T	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr6	85107041	85107042	chr6:85107042:C:T	rs9444295	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr6	85130168	85130169	chr6:85130169:T:C	rs505007	T	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr6	85361285	85361286	chr6:85361286:A:T	rs490055	A	T	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr6	85827435	85827436	chr6:85827436:A:G	rs3900313	A	G	t	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr6	86962095	86962096	chr6:86962096:A:G	rs78382687	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr6	87100022	87100023	chr6:87100023:T:A	rs981086	T	A	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr6	87198504	87198505	chr6:87198505:A:G	rs57421283	A	G	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr6	87338472	87338473	chr6:87338473:A:G	rs242279	A	G	A	Sox3.mouse_HMG_2	14	1	+	4.632862542083545	1.3147962723119442	CAGAAATGACATTGATT
chr6	87391001	87391002	chr6:87391002:G:A	rs6454605	G	A	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr6	87589591	87589592	chr6:87589592:A:C	rs9450751	A	C	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	87917689	87917690	chr6:87917690:G:A	rs9444564	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr6	87974112	87974113	chr6:87974113:T:A	rs2180716	T	A	A	Sox3.mouse_HMG_2	8	1	+	9.837301697757326	7.8048733800086145	CATCAAAGTTATTGAAG
chr6	88178830	88178831	chr6:88178831:A:C	rs61444148	A	C	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr6	88179496	88179497	chr6:88179497:C:G	rs4707437	C	G	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	88367960	88367961	chr6:88367961:T:G	rs715740	T	G	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr6	88963989	88963990	chr6:88963990:G:A	rs117955055	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr6	89154160	89154161	chr6:89154161:G:T	rs7452757	G	T	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr6	89154207	89154208	chr6:89154208:A:G	rs9451169	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr6	89190655	89190656	chr6:89190656:A:C	rs914477	A	C	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	89203388	89203389	chr6:89203389:C:G	rs4590241	C	G	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr6	89203392	89203393	chr6:89203393:G:A	rs4457139	G	A	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr6	89531311	89531312	chr6:89531312:G:A	rs76757374	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr6	89851164	89851165	chr6:89851165:A:G	rs62416018	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr6	89917567	89917568	chr6:89917568:A:G	rs56331762	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr6	89975927	89975928	chr6:89975928:G:A	rs16882324	G	A	G	Sox3.mouse_HMG_2	0	1	+	7.743446394602057	6.046954100899394	GGTCAATTCAATTGATC
chr6	90079060	90079061	chr6:90079061:T:C	rs115781566	T	C	T	Sox3.mouse_HMG_2	2	1	+	3.269917237326613	-3.0969800691991325	CATCAATGGGATTGCGA
chr6	90404491	90404492	chr6:90404492:T:C	rs7745520	T	C	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr6	90432675	90432676	chr6:90432676:A:T	rs12194712	A	T	A	Sox3.mouse_HMG_2	2	1	-	10.8809644383424	7.5993076625588625	AGTCAATGATATTGAGG
chr6	90675706	90675707	chr6:90675707:T:C	rs17592434	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr6	91172263	91172264	chr6:91172264:G:C	rs4544882	G	C	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr6	91852803	91852804	chr6:91852804:C:T	rs2454267	C	T	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr6	91879559	91879560	chr6:91879560:G:A	rs77316070	G	A	G	Sox3.mouse_HMG_2	3	1	-	3.035925519728491	-1.8209303554937293	GTTCCATTTTAATGATT
chr6	91886625	91886626	chr6:91886626:C:T	rs4707704	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr6	91941571	91941572	chr6:91941572:C:A	rs117859906	C	A	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr6	92362785	92362786	chr6:92362786:T:C	rs7769347	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr6	92565643	92565644	chr6:92565644:C:T	rs118134495	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	92820680	92820681	chr6:92820681:A:G	rs116639933	A	G	A	Sox3.mouse_HMG_2	5	1	+	1.9120354714277545	-4.477245962950134	GGTCAATGCTTTTGCTC
chr6	93166106	93166107	chr6:93166107:A:G	rs12193966	A	G	A	Sox3.mouse_HMG_2	15	1	-	4.299431100734002	0.5196316832282065	TAGCAATTATAATGATG
chr6	93423627	93423628	chr6:93423628:A:G	rs75173887	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr6	94377165	94377166	chr6:94377166:C:T	rs441388	C	T	C	Sox3.mouse_HMG_2	8	1	+	5.187129805970878	6.441551772126548	TGTCAAGGCCATTGAAA
chr6	94548351	94548352	chr6:94548352:A:T	rs78541758	A	T	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr6	94597491	94597492	chr6:94597492:G:A	rs9452849	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr6	94698949	94698950	chr6:94698950:G:A	rs1446104512	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr6	94862652	94862653	chr6:94862653:C:G	chr6:94862653:C:G	C	G	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr6	94862656	94862657	chr6:94862657:A:T	chr6:94862657:A:T	A	T	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr6	95229005	95229006	chr6:95229006:A:G	rs928674018	A	G	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr6	95289008	95289009	chr6:95289009:T:C	rs985703627	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr6	95424306	95424307	chr6:95424307:T:C	chr6:95424307:T:C	T	C	T	Sox3.mouse_HMG_2	16	1	+	3.3112270196618927	1.7082339700014417	CTTCCATTCTAGTGAGT
chr6	95591689	95591690	chr6:95591690:C:G	rs6568937	C	G	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr6	96223596	96223597	chr6:96223597:G:A	rs9391128	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr6	96625219	96625220	chr6:96625220:C:T	rs1413525	C	T	C	Sox3.mouse_HMG_2	11	1	-	3.7618913597227275	-0.8095927686105577	GAACCATGGCAGTGAAA
chr6	97689125	97689126	chr6:97689126:A:T	rs72925034	A	T	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr6	97699963	97699964	chr6:97699964:G:T	rs11153770	G	T	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr6	99137266	99137267	chr6:99137267:T:C	rs56861883	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr6	100087926	100087927	chr6:100087927:T:A	rs2474261	T	A	a	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr6	100127015	100127016	chr6:100127016:G:C	rs148702078	G	C	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr6	100229036	100229037	chr6:100229037:T:C	rs115605576	T	C	T	Sox3.mouse_HMG_2	9	1	+	2.0763153867038984	1.3836628438319387	CGTCCGTGATATTGATT
chr6	100352061	100352062	chr6:100352062:G:A	rs2841288	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr6	100416952	100416953	chr6:100416953:T:C	rs3798499	T	C	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr6	100593760	100593761	chr6:100593761:G:C	rs116979546	G	C	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr6	100720562	100720563	chr6:100720563:G:A	rs12194255	G	A	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr6	101183758	101183759	chr6:101183759:G:A	rs80194065	G	A	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr6	101957806	101957807	chr6:101957807:T:C	rs1304634	T	C	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr6	102327803	102327804	chr6:102327804:T:C	rs9377354	T	C	c	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr6	102451360	102451361	chr6:102451361:G:T	rs13209879	G	T	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr6	104809108	104809109	chr6:104809109:T:C	rs73768821	T	C	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr6	105113608	105113609	chr6:105113609:T:A	rs1981480	T	A	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr6	105210474	105210475	chr6:105210475:C:T	rs67107125	C	T	C	Sox3.mouse_HMG_2	8	1	-	2.284462925387458	1.0656725406429612	TGCCAATGGCAGTGACC
chr6	105210495	105210496	chr6:105210496:A:C	rs67836055	A	C	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr6	105436725	105436726	chr6:105436726:A:G	rs10440860	A	G	A	Sox3.mouse_HMG_2	12	1	-	6.677379795308636	0.626412657377819	GAAAAATGCTATTGATC
chr6	105588657	105588658	chr6:105588658:T:G	rs9386458	T	G	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr6	105676976	105676977	chr6:105676977:C:G	rs73506303	C	G	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr6	105678600	105678601	chr6:105678601:C:T	rs59363460	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr6	105760089	105760090	chr6:105760090:T:C	rs72931525	T	C	T	Sox3.mouse_HMG_2	4	1	-	4.866805953034612	-1.522475481343277	CAACAATGCTCTTGAGG
chr6	105804540	105804541	chr6:105804541:G:A	rs1876556	G	A	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr6	105886555	105886556	chr6:105886556:A:T	rs6903938	A	T	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr6	105886606	105886607	chr6:105886607:T:C	rs6926928	T	C	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr6	105893824	105893825	chr6:105893825:A:C	rs73772350	A	C	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr6	105901921	105901922	chr6:105901922:A:T	rs76368398	A	T	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	105959510	105959511	chr6:105959511:C:T	rs9386496	C	T	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr6	106116360	106116361	chr6:106116361:A:G	rs533733	A	G	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr6	106148809	106148810	chr6:106148810:G:A	rs9399974	G	A	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr6	106670398	106670399	chr6:106670399:C:T	rs12663120	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr6	107121830	107121831	chr6:107121831:G:T	rs1762717	G	T	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr6	107540725	107540726	chr6:107540726:G:A	rs79596750	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	107689370	107689371	chr6:107689371:T:C	rs9372165	T	C	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr6	107807620	107807621	chr6:107807621:A:G	rs74943503	A	G	A	Sox3.mouse_HMG_2	4	1	+	4.575995902178434	-1.8132855321994563	TTACAATGTTATTGTCA
chr6	107841138	107841139	chr6:107841139:A:G	rs17596103	A	G	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr6	108242640	108242641	chr6:108242641:C:A	rs149888849	C	A	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr6	108364511	108364512	chr6:108364512:A:G	rs9398169	A	G	A	Sox3.mouse_HMG_2	6	1	-	4.380172819179917	-2.009108615197974	GATTAATGTCTTTGAAA
chr6	108729174	108729175	chr6:108729175:G:T	rs9486940	G	T	g	Sox3.mouse_HMG_2	3	1	-	7.975914358629439	1.075244119370533	TAACAATGCTATTAATG
chr6	108985759	108985760	chr6:108985760:C:A	rs2145763	C	A	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr6	109010305	109010306	chr6:109010306:C:A	rs67804469	C	A	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	109059904	109059905	chr6:109059905:A:G	rs565800876	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr6	109059936	109059937	chr6:109059937:A:G	rs79723641	A	G	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr6	109867921	109867922	chr6:109867922:T:C	rs9487240	T	C	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr6	109867923	109867924	chr6:109867924:T:G	rs62437601	T	G	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr6	109867945	109867946	chr6:109867946:A:G	rs9487241	A	G	G	Sox3.mouse_HMG_2	4	1	+	7.485670197870041	1.0963887634921523	CTTCAATTTCAGTGCTT
chr6	110021556	110021557	chr6:110021557:A:G	rs7763290	A	G	G	Sox3.mouse_HMG_2	2	1	-	9.879187754234364	3.5122904477086183	TATCAATTCCAGTGTTA
chr6	110325140	110325141	chr6:110325141:C:T	rs781009413	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr6	110415911	110415912	chr6:110415912:G:A	rs4945862	G	A	G	Sox3.mouse_HMG_2	2	1	+	2.7976365049498657	4.669854395846219	GAGTAATGTTGTTGATT
chr6	110482333	110482334	chr6:110482334:T:G	rs2494545	T	G	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr6	110528617	110528618	chr6:110528618:G:C	rs114286353	G	C	G	Sox3.mouse_HMG_2	6	1	+	4.299280651461034	4.818074444876201	CATCAAGTTCATGGATT
chr6	110981428	110981429	chr6:110981429:C:T	rs34994540	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr6	111278010	111278011	chr6:111278011:C:T	rs79788276	C	T	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr6	111485148	111485149	chr6:111485149:G:A	rs17510346	G	A	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr6	111552207	111552208	chr6:111552208:A:C	rs1039674894	A	C	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr6	111747628	111747629	chr6:111747629:A:G	rs76693641	A	G	A	Sox3.mouse_HMG_2	1	1	+	3.4774150066595433	1.4710270646400871	TATCATTGGAAGTGATG
chr6	111830771	111830772	chr6:111830772:T:A	rs9487729	T	A	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr6	111943935	111943936	chr6:111943936:A:T	rs12200057	A	T	A	Sox3.mouse_HMG_2	6	1	-	1.1368894370648182	-5.77118579072824	GGTCACTGTGATTGGTG
chr6	112087908	112087909	chr6:112087909:T:C	rs149880190	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.680299600811794	-2.7089818335660967	GAACAATGGCGTTGAGC
chr6	112214880	112214881	chr6:112214881:A:G	rs189545465	A	G	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr6	112332687	112332688	chr6:112332688:C:T	rs9398305	C	T	C	Sox3.mouse_HMG_2	15	1	+	2.6778961087412463	6.457695526247042	AGTCAAAGTCAGTGACA
chr6	112436765	112436766	chr6:112436766:C:T	rs9487914	C	T	C	Sox3.mouse_HMG_2	7	1	-	1.345194099048421	-5.283627396039636	CATCAAGGCCCTTGAAT
chr6	112692124	112692125	chr6:112692125:G:A	rs12209591	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr6	112806452	112806453	chr6:112806453:G:A	rs3862840	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr6	112880567	112880568	chr6:112880568:A:C	rs6905481	A	C	A	Sox3.mouse_HMG_2	11	1	-	3.779977001937595	2.39945482452377	GCACAGTGGTATTGAGT
chr6	112939840	112939841	chr6:112939841:G:T	rs2795582	G	T	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr6	113122504	113122505	chr6:113122505:T:C	rs2473937	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr6	113125953	113125954	chr6:113125954:A:G	rs141758798	A	G	A	Sox3.mouse_HMG_2	1	1	-	5.031542924243639	5.0113249469529935	GTTCAATGACATGGAAA
chr6	113450071	113450072	chr6:113450072:A:G	rs9320456	A	G	A	Sox3.mouse_HMG_2	10	1	+	11.724163169357068	4.815408390041846	TAACAATGCTATTGAAG
chr6	113846738	113846739	chr6:113846739:A:T	rs4132138	A	T	T	Sox3.mouse_HMG_2	6	1	-	8.530190695010662	1.6221154672176052	AGTCAATGTTCTTGATA
chr6	113881777	113881778	chr6:113881778:A:G	rs113177884	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr6	114992592	114992593	chr6:114992593:T:C	rs3932658	T	C	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr6	115046929	115046930	chr6:115046930:G:A	rs147608072	G	A	G	Sox3.mouse_HMG_2	13	1	+	3.2438059712664833	-2.8078325329198277	ATTCCATTTTAGTGAAG
chr6	115150822	115150823	chr6:115150823:T:G	rs150990307	T	G	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	115293438	115293439	chr6:115293439:G:T	rs12196309	G	T	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr6	115330151	115330152	chr6:115330152:G:C	rs4335017	G	C	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr6	115582423	115582424	chr6:115582424:T:C	rs9400854	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr6	115702357	115702358	chr6:115702358:C:T	rs9387356	C	T	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr6	116248945	116248946	chr6:116248946:G:T	rs957593490	G	T	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr6	116450350	116450351	chr6:116450351:G:T	rs12664607	G	T	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr6	116568412	116568413	chr6:116568413:T:G	rs980214	T	G	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	117127863	117127864	chr6:117127864:C:A	rs783372	C	A	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr6	117562519	117562520	chr6:117562520:A:T	rs117322147	A	T	A	Sox3.mouse_HMG_2	9	1	-	4.541844397475336	-1.4421368624089828	TCTCAATTATGTTGATC
chr6	117591732	117591733	chr6:117591733:G:T	rs36051454	G	T	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr6	118297474	118297475	chr6:118297475:A:G	rs4294041	A	G	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr6	118324215	118324216	chr6:118324216:C:T	rs9489341	C	T	C	Sox3.mouse_HMG_2	3	1	+	4.9358588159722245	0.0790029407500012	GACCAAAGGCATTGATT
chr6	118551348	118551349	chr6:118551349:A:G	rs916438853	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr6	118764914	118764915	chr6:118764915:C:T	rs574822436	C	T	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr6	119132172	119132173	chr6:119132173:G:C	rs1891541	G	C	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr6	119749574	119749575	chr6:119749575:C:T	rs7746982	C	T	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr6	120021052	120021053	chr6:120021053:T:C	rs6933285	T	C	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr6	120021094	120021095	chr6:120021095:G:T	rs6569098	G	T	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr6	120095924	120095925	chr6:120095925:G:T	rs62423764	G	T	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr6	120229991	120229992	chr6:120229992:C:T	rs77273437	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr6	120805335	120805336	chr6:120805336:C:T	rs2789074	C	T	T	Sox3.mouse_HMG_2	11	1	-	2.6556014192652624	-1.915882709068023	GAACAATGTAAGTAATG
chr6	121334970	121334971	chr6:121334971:G:A	rs141141160	G	A	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr6	121383262	121383263	chr6:121383263:G:C	rs9490226	G	C	g	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr6	121443111	121443112	chr6:121443112:A:C	rs10456940	A	C	a	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr6	121488303	121488304	chr6:121488304:G:A	rs4946572	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr6	121523204	121523205	chr6:121523205:C:A	rs4143301	C	A	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr6	121523228	121523229	chr6:121523229:G:A	rs115147666	G	A	G	Sox3.mouse_HMG_2	9	1	-	7.183240363941692	7.875892906813652	TAACAGTGTCAGTGATT
chr6	121678279	121678280	chr6:121678280:A:C	rs6914088	A	C	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr6	121826578	121826579	chr6:121826579:G:A	rs9401454	G	A	G	Sox3.mouse_HMG_2	3	1	-	5.640117161743502	0.7832612865212798	GCTCACTTCCAGTGATT
chr6	121879165	121879166	chr6:121879166:C:T	rs1406668	C	T	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr6	122016161	122016162	chr6:122016162:C:T	rs7341314	C	T	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr6	122129955	122129956	chr6:122129956:C:A	rs80105958	C	A	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	122390630	122390631	chr6:122390631:G:A	rs137862583	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr6	122604852	122604853	chr6:122604853:A:G	chr6:122604853:A:G	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr6	122654812	122654813	chr6:122654813:A:G	rs12205720	A	G	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr6	122720311	122720312	chr6:122720312:A:G	rs6933848	A	G	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr6	122846232	122846233	chr6:122846233:A:G	rs12332942	A	G	A	Sox3.mouse_HMG_2	15	1	-	4.7456569981457335	0.9658575806399385	AACCAAAGTTATTGATT
chr6	123307141	123307142	chr6:123307142:T:C	rs9320926	T	C	N	Sox3.mouse_HMG_2	2	1	+	6.198899973773577	-0.16799733275216666	AATAAATGTTATTGGTC
chr6	123462599	123462600	chr6:123462600:G:A	rs4336466	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr6	124000893	124000894	chr6:124000894:C:A	rs7775695	C	A	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr6	124028238	124028239	chr6:124028239:G:T	rs17086515	G	T	T	Sox3.mouse_HMG_2	7	1	+	3.6360619062690587	2.5101706924238143	TAACAATGTTATTTTTC
chr6	124123980	124123981	chr6:124123981:C:A	rs76236311	C	A	C	Sox3.mouse_HMG_2	1	1	-	2.558405135861453	1.8695695188276147	GGCCAGTGATATTGATG
chr6	124123994	124123995	chr6:124123995:T:C	rs163297	T	C	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr6	124148908	124148909	chr6:124148909:G:C	rs9388306	G	C	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr6	124371408	124371409	chr6:124371409:G:A	rs2208814	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr6	124666092	124666093	chr6:124666093:G:A	rs972895	G	A	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr6	125200191	125200192	chr6:125200192:A:G	rs554004	A	G	A	Sox3.mouse_HMG_2	1	1	+	4.314427115212038	2.308039173192582	CATGAATTGCATTAATG
chr6	125700288	125700289	chr6:125700289:A:T	rs926853	A	T	T	Sox3.mouse_HMG_2	0	1	+	6.481031547273655	7.387755309198021	ACTCAATGTCAGTTATG
chr6	125985497	125985498	chr6:125985498:G:C	rs7755633	G	C	G	Sox3.mouse_HMG_2	1	1	-	3.2643640783474424	3.973417672671924	GCGCAGTGGTAGTGATT
chr6	126188531	126188532	chr6:126188532:A:G	rs9491575	A	G	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr6	126336325	126336326	chr6:126336326:A:G	rs4897175	A	G	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr6	127247301	127247302	chr6:127247302:C:A	rs4371861	C	A	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr6	127440186	127440187	chr6:127440187:A:T	rs2326592	A	T	T	Sox3.mouse_HMG_2	11	1	-	3.0493627077779206	-2.9026435979691887	CGTCATTTTTATTGTAT
chr6	127455893	127455894	chr6:127455894:T:C	rs982306	T	C	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr6	127579144	127579145	chr6:127579145:A:G	rs60059762	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr6	127690305	127690306	chr6:127690306:C:T	chr6:127690306:C:T	C	T	c	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr6	127690318	127690319	chr6:127690319:C:T	chr6:127690319:C:T	C	T	c	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr6	127690327	127690328	chr6:127690328:A:G	chr6:127690328:A:G	A	G	a	Sox3.mouse_HMG_2	4	1	+	3.6075425516968624	-2.781738882681027	CTTCATTTTCATTGTTG
chr6	127690330	127690331	chr6:127690331:T:C	rs78591248	T	C	t	Sox3.mouse_HMG_2	7	1	+	3.6075425516968624	-1.8953877295459496	CTTCATTTTCATTGTTG
chr6	127932691	127932692	chr6:127932692:T:C	rs1044512983	T	C	T	Sox3.mouse_HMG_2	1	1	-	6.817129707378374	4.810741765358916	CATCAATATCAGTGGTA
chr6	128933149	128933150	chr6:128933150:C:A	rs13194622	C	A	C	Sox3.mouse_HMG_2	3	1	+	2.415411096557359	-4.485259142701545	TATCCATGTCATTGCAA
chr6	129249617	129249618	chr6:129249618:T:A	rs3778123	T	A	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr6	129318408	129318409	chr6:129318409:C:T	chr6:129318409:C:T	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr6	129318411	129318412	chr6:129318412:C:T	rs113995977	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	129481976	129481977	chr6:129481977:T:A	rs2784900	T	A	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr6	129526827	129526828	chr6:129526828:A:G	rs2006724	A	G	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr6	130309783	130309784	chr6:130309784:T:C	rs73615694	T	C	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr6	130431746	130431747	chr6:130431747:G:A	rs4897423	G	A	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr6	130559742	130559743	chr6:130559743:C:T	rs2876084	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr6	130598324	130598325	chr6:130598325:A:G	rs145275245	A	G	A	Sox3.mouse_HMG_2	11	1	-	5.5525830690309	-1.131791130429436	TTGCAATGGCATTGTTT
chr6	130598326	130598327	chr6:130598327:G:C	rs77437540	G	C	G	Sox3.mouse_HMG_2	9	1	-	5.5525830690309	0.26125435201854014	TTGCAATGGCATTGTTT
chr6	130783680	130783681	chr6:130783681:T:G	rs9492719	T	G	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr6	131026143	131026144	chr6:131026144:C:T	rs9388877	C	T	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr6	131061327	131061328	chr6:131061328:C:T	rs144484081	C	T	C	Sox3.mouse_HMG_2	0	1	-	2.3264836653925136	0.6299913716898506	GAACAATGGTGTGGATT
chr6	131415074	131415075	chr6:131415075:C:T	rs58406766	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr6	131998765	131998766	chr6:131998766:G:A	rs233941	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr6	132053814	132053815	chr6:132053815:A:G	rs191234828	A	G	A	Sox3.mouse_HMG_2	12	1	-	5.338736434219997	-0.7122307037108188	GGACAAATTCATTGATG
chr6	132131692	132131693	chr6:132131693:G:A	rs75859648	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr6	132198105	132198106	chr6:132198106:A:C	rs4895932	A	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr6	132218376	132218377	chr6:132218377:T:C	rs1321279	T	C	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr6	132295514	132295515	chr6:132295515:C:T	rs9493275	C	T	c	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr6	132323259	132323260	chr6:132323260:T:C	rs17061185	T	C	C	Sox3.mouse_HMG_2	6	1	+	2.5580864936142134	-3.8311949407636763	GGTCAATGGAATTAAAT
chr6	132333691	132333692	chr6:132333692:C:T	rs11968833	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr6	132728833	132728834	chr6:132728834:G:A	rs45553436	G	A	G	Sox3.mouse_HMG_2	9	1	-	3.064135202784101	3.7567877456560606	ATGCAATGCCAGTGACT
chr6	132730620	132730621	chr6:132730621:A:C	rs6569839	A	C	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr6	132814693	132814694	chr6:132814694:A:G	rs888345218	A	G	A	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr6	132814724	132814725	chr6:132814725:T:G	rs12202302	T	G	T	Sox3.mouse_HMG_2	15	1	+	3.831683321225542	1.0945561765055163	AGTCAATGCTTTTGTTT
chr6	133040227	133040228	chr6:133040228:C:T	rs184222634	C	T	C	Sox3.mouse_HMG_2	2	1	-	9.182981851887419	11.055199742783774	AAGCAATTGTAGTGATG
chr6	133410797	133410798	chr6:133410798:T:C	rs75279330	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr6	133410852	133410853	chr6:133410853:C:A	rs58512026	C	A	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr6	133528650	133528651	chr6:133528651:A:G	rs3822939	A	G	G	Sox3.mouse_HMG_2	4	1	+	2.0266768752678344	-4.362604559110055	AGACAATGGTTGTGATC
chr6	133788706	133788707	chr6:133788707:A:G	chr6:133788707:A:G	A	G	a	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr6	134382089	134382090	chr6:134382090:A:G	rs78156561	A	G	A	Sox3.mouse_HMG_2	6	1	-	4.041145092427729	-2.348136341950161	GAACAATAGCAGTGAAA
chr6	134570125	134570126	chr6:134570126:G:A	rs117419548	G	A	G	Sox3.mouse_HMG_2	3	1	-	3.421927557578104	-1.4349283176441172	TATCGATTTTATTTATC
chr6	134570133	134570134	chr6:134570134:G:A	rs228427	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr6	134585528	134585529	chr6:134585529:T:G	rs9483723	T	G	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr6	134722592	134722593	chr6:134722593:C:T	rs9376055	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr6	134752659	134752660	chr6:134752660:C:T	rs67976969	C	T	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr6	134939164	134939165	chr6:134939165:T:C	rs7754722	T	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr6	134997715	134997716	chr6:134997716:A:T	rs4895439	A	T	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr6	135212145	135212146	chr6:135212146:T:G	rs210946	T	G	G	Sox3.mouse_HMG_2	12	1	-	3.2819373892028905	3.2819373892028905	CATCAATGGTATATAAA
chr6	135217453	135217454	chr6:135217454:G:A	rs2179308	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr6	135583326	135583327	chr6:135583327:G:C	rs146323116	G	C	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr6	135600433	135600434	chr6:135600434:C:T	rs114986612	C	T	c	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr6	136117272	136117273	chr6:136117273:A:T	rs923851846	A	T	A	Sox3.mouse_HMG_2	8	1	-	5.436276141224638	3.403847823475929	ATTTAATTTTATTGAAC
chr6	136181488	136181489	chr6:136181489:C:T	rs9402793	C	T	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr6	136508891	136508892	chr6:136508892:T:C	rs142027878	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	137216268	137216269	chr6:137216269:C:T	rs554227520	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr6	137233841	137233842	chr6:137233842:C:T	rs73561906	C	T	C	Sox3.mouse_HMG_2	3	1	+	6.658330963190053	1.8014750879678314	CACCAATGTTATTTATT
chr6	137427711	137427712	chr6:137427712:A:G	rs6929588	A	G	G	Sox3.mouse_HMG_2	6	1	-	4.34400206685108	-2.0452793675268097	CCTCAATGCCATGGTTT
chr6	137427724	137427725	chr6:137427725:T:C	rs115177216	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr6	137665694	137665695	chr6:137665695:C:T	rs79184826	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr6	137869678	137869679	chr6:137869679:C:G	rs5029931	C	G	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr6	137912395	137912396	chr6:137912396:A:G	rs145866478	A	G	G	Sox3.mouse_HMG_2	11	1	-	12.498514087622457	5.814139888162121	TTTCAATTATATTGATA
chr6	138105602	138105603	chr6:138105603:A:G	rs55849258	A	G	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr6	138468886	138468887	chr6:138468887:C:G	rs55942880	C	G	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr6	138480647	138480648	chr6:138480648:T:G	rs181532138	T	G	T	Sox3.mouse_HMG_2	16	1	-	5.140659693491378	4.112962759950124	ATTCAATGCTATTAAAA
chr6	138480660	138480661	chr6:138480661:G:A	rs76618647	G	A	A	Sox3.mouse_HMG_2	3	1	-	5.140659693491378	0.28380381826915696	ATTCAATGCTATTAAAA
chr6	138493279	138493280	chr6:138493280:T:C	rs4896369	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr6	138508017	138508018	chr6:138508018:A:G	rs28702636	A	G	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr6	138609927	138609928	chr6:138609928:T:C	rs12523677	T	C	T	Sox3.mouse_HMG_2	14	1	-	2.1256521406063604	-1.1924141291652408	GAAGGATGGCATTGATG
chr6	138691162	138691163	chr6:138691163:A:G	rs76293003	A	G	A	Sox3.mouse_HMG_2	6	1	-	2.720106993966285	-3.6691744404116036	ACTTAATGTGAGTGATG
chr6	138943792	138943793	chr6:138943793:T:G	rs6899737	T	G	G	Sox3.mouse_HMG_2	15	1	+	6.562269318374625	3.8251421736545987	AAACAATGTCTTTGATA
chr6	139155209	139155210	chr6:139155210:C:T	rs9403046	C	T	T	Sox3.mouse_HMG_2	7	1	-	3.8082348918878046	-2.820586603200253	CATAAATGCCATTGTGT
chr6	139202216	139202217	chr6:139202217:C:T	rs115144400	C	T	C	Sox3.mouse_HMG_2	4	1	+	5.96460219882563	5.96460219882563	GAACCATTTCAGTGATG
chr6	139241302	139241303	chr6:139241303:G:C	rs10499208	G	C	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr6	139406721	139406722	chr6:139406722:T:C	rs74539375	T	C	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr6	139487681	139487682	chr6:139487682:G:T	rs9399281	G	T	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr6	139501184	139501185	chr6:139501185:A:G	rs62440903	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.80094764002955	-1.5883337943483409	AAACAATGGTATTTAGT
chr6	139501189	139501190	chr6:139501190:A:G	rs4895563	A	G	A	Sox3.mouse_HMG_2	10	1	+	4.80094764002955	-2.1078071392856708	AAACAATGGTATTTAGT
chr6	139545232	139545233	chr6:139545233:C:G	rs17586789	C	G	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr6	139754890	139754891	chr6:139754891:A:T	rs6905478	A	T	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr6	139847203	139847204	chr6:139847204:G:A	rs17811355	G	A	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr6	139847206	139847207	chr6:139847207:G:A	rs192664048	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr6	139847211	139847212	chr6:139847212:G:T	rs113145126	G	T	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr6	139965098	139965099	chr6:139965099:A:C	rs596878	A	C	A	Sox3.mouse_HMG_2	15	1	+	5.568772569627079	4.092362845579968	CTTTAATGATAGTGAAA
chr6	140367094	140367095	chr6:140367095:C:G	rs140726237	C	G	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	140541642	140541643	chr6:140541643:G:C	chr6:140541643:G:C	G	C	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr6	140858789	140858790	chr6:140858790:G:A	rs650254	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr6	141483127	141483128	chr6:141483128:T:C	rs74331666	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr6	142271676	142271677	chr6:142271677:G:A	rs186222406	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr6	142320418	142320419	chr6:142320419:A:G	rs9385993	A	G	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr6	142320468	142320469	chr6:142320469:T:C	rs12189801	T	C	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr6	143079530	143079531	chr6:143079531:A:G	rs9386021	A	G	G	Sox3.mouse_HMG_2	5	1	+	10.64771422345681	4.258432789078919	AATCAATGGGATTGATA
chr6	143268322	143268323	chr6:143268323:A:T	rs17530336	A	T	A	Sox3.mouse_HMG_2	12	1	-	2.8272459391241993	-3.2237211988066163	GAACAATGCCAGTCGTA
chr6	143279663	143279664	chr6:143279664:G:A	rs6933721	G	A	G	Sox3.mouse_HMG_2	11	1	+	0.9169812383517854	-3.6545028899815	CCTCCATGGCAGTGGAG
chr6	143279681	143279682	chr6:143279682:G:A	rs34030336	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr6	143328846	143328847	chr6:143328847:A:T	rs6941707	A	T	A	Sox3.mouse_HMG_2	4	1	+	5.111202838802788	-1.796872388990268	TATCATGGTTATTGATT
chr6	143345294	143345295	chr6:143345295:A:T	rs6932294	A	T	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	143578498	143578499	chr6:143578499:C:T	rs6919613	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr6	143630729	143630730	chr6:143630730:A:C	rs7741506	A	C	A	Sox3.mouse_HMG_2	4	1	+	4.830610827256329	-2.0774644005367278	GTACAATGCCATTTATA
chr6	143633281	143633282	chr6:143633282:T:C	rs13200953	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.6256219003825083	-2.763659533995381	TGTCAATGTTCTGGATT
chr6	143930223	143930224	chr6:143930224:C:A	rs9484833	C	A	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr6	143949780	143949781	chr6:143949781:T:G	rs76015148	T	G	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	144090427	144090428	chr6:144090428:G:C	rs34372511	G	C	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr6	144131433	144131434	chr6:144131434:A:C	rs4463275	A	C	A	Sox3.mouse_HMG_2	7	1	-	8.499836057426828	9.625727271272073	CATCACTTTTATTGAAA
chr6	144278738	144278739	chr6:144278739:G:A	rs664721	G	A	A	Sox3.mouse_HMG_2	11	1	-	3.0448296214137556	9.729203820874092	GCTCAATGTTTCTGATG
chr6	144719006	144719007	chr6:144719007:A:G	rs75376745	A	G	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr6	144852006	144852007	chr6:144852007:T:G	rs9373431	T	G	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	145025630	145025631	chr6:145025631:G:C	rs80298133	G	C	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr6	145280423	145280424	chr6:145280424:T:C	rs1321529	T	C	T	Sox3.mouse_HMG_2	9	1	+	6.815154537109987	6.122501994238028	AATCAATTGTATTTAAA
chr6	145287328	145287329	chr6:145287329:G:A	rs505776	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr6	145404681	145404682	chr6:145404682:A:G	rs4243477	A	G	A	Sox3.mouse_HMG_2	9	1	-	2.390433602890213	1.6977810600182526	TGACAATGTTGTTGAGC
chr6	146211735	146211736	chr6:146211736:T:C	rs990519	T	C	C	Sox3.mouse_HMG_2	6	1	+	5.916500808680638	-0.47278062569725426	GAACAATGGTATTTGTT
chr6	146355271	146355272	chr6:146355272:T:C	rs725186	T	C	T	Sox3.mouse_HMG_2	11	1	+	6.175338924034677	-0.5090352754256586	GATTAGTGTCATTGATC
chr6	146363927	146363928	chr6:146363928:T:A	rs2252798	T	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr6	146404987	146404988	chr6:146404988:A:G	rs9497535	A	G	A	Sox3.mouse_HMG_2	7	1	-	3.259829456669126	-2.2431008245736854	TTTCAAGTCTAGTGAAT
chr6	146405007	146405008	chr6:146405008:G:A	rs9497536	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr6	146680272	146680273	chr6:146680273:G:A	rs1417588	G	A	G	Sox3.mouse_HMG_2	13	1	+	5.526080283513145	-0.5255582206731675	GCTCAATGCTGTTGAGA
chr6	147063612	147063613	chr6:147063613:A:G	rs17076616	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr6	147322792	147322793	chr6:147322793:A:T	rs561450709	A	T	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	147522719	147522720	chr6:147522720:A:G	rs607474	A	G	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr6	147528904	147528905	chr6:147528905:T:C	rs77628336	T	C	T	Sox3.mouse_HMG_2	5	1	-	7.895094652429819	1.5058132180519292	CATCAATGGTACTGTTT
chr6	148192624	148192625	chr6:148192625:T:G	rs9497963	T	G	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr6	148235718	148235719	chr6:148235719:T:A	rs9497977	T	A	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr6	148919256	148919257	chr6:148919257:G:A	rs12201109	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr6	148981820	148981821	chr6:148981821:A:G	rs9498185	A	G	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr6	149076388	149076389	chr6:149076389:T:C	rs78956649	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr6	149177246	149177247	chr6:149177247:A:G	rs7751665	A	G	G	Sox3.mouse_HMG_2	11	1	-	4.943244459050868	-1.741129740409466	AAGCAATTGGATTGATT
chr6	149206531	149206532	chr6:149206532:C:A	rs607071	C	A	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr6	149239192	149239193	chr6:149239193:A:G	rs11966037	A	G	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr6	149289633	149289634	chr6:149289634:C:T	rs76305607	C	T	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	149314663	149314664	chr6:149314664:T:C	rs201641387	T	C	t	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr6	149457065	149457066	chr6:149457066:A:G	rs2744430	A	G	A	Sox3.mouse_HMG_2	4	1	+	4.498880346484371	-1.8904010878935176	ACTCAATTTCACTGAAT
chr6	149887609	149887610	chr6:149887610:A:T	rs79782857	A	T	A	Sox3.mouse_HMG_2	15	1	-	5.760271157757697	3.4568814642990127	GATCAATGTTTCTGATG
chr6	150404272	150404273	chr6:150404273:T:C	rs115817957	T	C	T	Sox3.mouse_HMG_2	1	1	-	5.911943126629131	3.9055551846096725	TATCAATATTATGGATT
chr6	150493413	150493414	chr6:150493414:A:G	rs12191156	A	G	A	Sox3.mouse_HMG_2	1	1	+	2.6822626046422524	0.675874662622794	CATAAATTTCAGTGGGA
chr6	150601901	150601902	chr6:150601902:A:G	rs62432652	A	G	G	Sox3.mouse_HMG_2	11	1	-	2.989020332404821	-3.6953538670555135	TATTAAAGGCATTGAAG
chr6	150668991	150668992	chr6:150668992:A:G	rs185172259	A	G	A	Sox3.mouse_HMG_2	6	1	-	5.015690225337453	-1.3735912090404372	TAACAATGGCATGGAGT
chr6	150720215	150720216	chr6:150720216:C:T	rs9383542	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr6	150756422	150756423	chr6:150756423:A:G	rs3734410	A	G	G	Sox3.mouse_HMG_2	14	1	+	2.304920649071596	-1.0131456207000056	CCTCATTGTTTTTGATA
chr6	150756432	150756433	chr6:150756433:C:T	rs935376528	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr6	150992780	150992781	chr6:150992781:G:A	rs117106795	G	A	G	Sox3.mouse_HMG_2	8	1	+	2.0269084845009075	0.8081180997564107	GTTGAATGGTAGGGATG
chr6	150997097	150997098	chr6:150997098:C:T	rs115051576	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr6	151015176	151015177	chr6:151015177:T:G	rs6910091	T	G	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr6	151046241	151046242	chr6:151046242:C:A	rs13195153	C	A	C	Sox3.mouse_HMG_2	0	1	-	3.041242109108239	2.2514735773299432	GATTAATAGCAGTGAAT
chr6	151120852	151120853	chr6:151120853:C:T	rs75281945	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr6	151254808	151254809	chr6:151254809:C:T	rs17080959	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr6	151254815	151254816	chr6:151254816:A:G	rs187019384	A	G	A	Sox3.mouse_HMG_2	5	1	+	5.974261356894166	-0.41502007748372366	CAACAATGACAGAGATT
chr6	151254821	151254822	chr6:151254822:G:C	rs12195960	G	C	G	Sox3.mouse_HMG_2	11	1	+	5.974261356894166	0.6704093348476545	CAACAATGACAGAGATT
chr6	151299453	151299454	chr6:151299454:A:G	rs9383565	A	G	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr6	152097439	152097440	chr6:152097440:T:C	rs3778099	T	C	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr6	152458797	152458798	chr6:152458798:G:A	rs34610829	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr6	152467032	152467033	chr6:152467033:G:A	rs6557228	G	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr6	152876314	152876315	chr6:152876315:T:C	rs852649	T	C	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	153027572	153027573	chr6:153027573:A:G	rs598662	A	G	G	Sox3.mouse_HMG_2	15	1	-	3.398918740388436	-0.3808806771173599	CATCATTTCCATTGCTT
chr6	153027606	153027607	chr6:153027607:T:C	rs598623	T	C	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr6	153121924	153121925	chr6:153121925:C:T	rs12197245	C	T	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr6	153139973	153139974	chr6:153139974:T:C	rs635023	T	C	T	Sox3.mouse_HMG_2	1	1	-	0.9662350157294805	-1.0401529262899758	GACCGATGCCAGTGAAG
chr6	153166908	153166909	chr6:153166909:T:C	rs12203312	T	C	T	Sox3.mouse_HMG_2	15	1	+	8.004086566949868	4.224287149444073	TCTCAACTTCATTGATT
chr6	153684841	153684842	chr6:153684842:C:T	rs2350396	C	T	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr6	154039560	154039561	chr6:154039561:C:T	rs1799972	C	T	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	154056705	154056706	chr6:154056706:G:A	rs477589	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr6	154288038	154288039	chr6:154288039:C:T	rs7753809	C	T	c	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr6	154392685	154392686	chr6:154392686:T:C	rs11758486	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr6	154537484	154537485	chr6:154537485:G:C	rs116817894	G	C	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr6	154945622	154945623	chr6:154945623:A:C	rs73567588	A	C	A	Sox3.mouse_HMG_2	7	1	-	2.248391503096006	3.3742827169412513	CCTCCATTTTATAGATG
chr6	155120850	155120851	chr6:155120851:A:C	rs6557402	A	C	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr6	155120875	155120876	chr6:155120876:T:C	rs2062409	T	C	C	Sox3.mouse_HMG_2	10	1	-	4.591136071787334	-2.3176187075278847	TCTCAACTACAGTGATT
chr6	155223262	155223263	chr6:155223263:T:C	rs4143683	T	C	C	Sox3.mouse_HMG_2	11	1	+	4.1509382716154875	-2.5334359278448475	TCTTAATATTATTGATA
chr6	155260154	155260155	chr6:155260155:C:A	rs4869849	C	A	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr6	155375579	155375580	chr6:155375580:A:G	rs9397246	A	G	A	Sox3.mouse_HMG_2	10	1	+	3.0340552126324978	-3.8746995666827213	GCCCCATGTCATTGATT
chr6	155862012	155862013	chr6:155862013:C:T	rs4463267	C	T	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	155917388	155917389	chr6:155917389:T:C	rs56405658	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.567480359188677	-3.8218010751892115	TGTCAATGCTACAGATG
chr6	156026948	156026949	chr6:156026949:C:T	rs4870421	C	T	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr6	156376546	156376547	chr6:156376547:T:G	rs1377973	T	G	T	Sox3.mouse_HMG_2	10	1	-	4.995793939240529	-1.912960840074692	ATTCAAATTCATTGATC
chr6	156398650	156398651	chr6:156398651:G:A	rs7743967	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr6	156503199	156503200	chr6:156503200:G:A	rs73569423	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr6	156516320	156516321	chr6:156516321:T:C	rs117577781	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr6	156584166	156584167	chr6:156584167:C:T	rs1854097	C	T	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr6	156696542	156696543	chr6:156696543:C:G	rs6931988	C	G	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr6	156791034	156791035	chr6:156791035:A:C	rs9372015	A	C	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr6	156868621	156868622	chr6:156868622:A:T	rs12213563	A	T	A	Sox3.mouse_HMG_2	12	1	-	3.196845483196535	-2.854121654734281	CATGAATGGTACTGAAG
chr6	156975688	156975689	chr6:156975689:C:G	rs4028073	C	G	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr6	157007688	157007689	chr6:157007689:G:A	rs12206666	G	A	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr6	157089406	157089407	chr6:157089407:A:G	rs17088104	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr6	157230851	157230852	chr6:157230852:T:G	rs148079503	T	G	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr6	157432626	157432627	chr6:157432627:T:C	rs17165322	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr6	157453645	157453646	chr6:157453646:C:T	rs9457514	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr6	157598397	157598398	chr6:157598398:C:G	rs17447588	C	G	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr6	158024964	158024965	chr6:158024965:C:T	rs74511933	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr6	158088599	158088600	chr6:158088600:G:A	rs149011599	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr6	158248958	158248959	chr6:158248959:G:A	rs3850660	G	A	A	Sox3.mouse_HMG_2	9	1	-	3.7899254422737125	4.482577985145672	CATTAGTTGCAGTGATG
chr6	158398767	158398768	chr6:158398768:T:C	rs705940	T	C	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr6	158474973	158474974	chr6:158474974:C:G	rs627967	C	G	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr6	158783149	158783150	chr6:158783150:G:A	rs3103002	G	A	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr6	158858261	158858262	chr6:158858262:T:C	rs4569991	T	C	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr6	158874306	158874307	chr6:158874307:T:C	rs10945568	T	C	c	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr6	158972178	158972179	chr6:158972179:G:A	rs2235823	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr6	158978969	158978970	chr6:158978970:T:A	rs767378346	T	A	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr6	159110867	159110868	chr6:159110868:G:C	rs7768113	G	C	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr6	159110871	159110872	chr6:159110872:A:G	rs7750790	A	G	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr6	159178919	159178920	chr6:159178920:A:G	rs295327	A	G	G	Sox3.mouse_HMG_2	4	1	+	3.2253018155992144	-3.1639796187786735	CAGCAATTCTCGTGATG
chr6	159229689	159229690	chr6:159229690:C:T	rs57447691	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr6	159436794	159436795	chr6:159436795:C:T	rs550509594	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr6	159557750	159557751	chr6:159557751:A:T	rs240892	A	T	T	Sox3.mouse_HMG_2	5	1	+	4.413190792231446	-2.4948844355616133	AATCAATGATAGAGACG
chr6	159609266	159609267	chr6:159609267:C:T	rs57809537	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr6	160050158	160050159	chr6:160050159:T:G	rs8191818	T	G	T	Sox3.mouse_HMG_2	1	1	+	6.53763574236841	7.226471359402247	TTCCAATGCCAGTGATT
chr6	160096855	160096856	chr6:160096856:C:T	rs998203	C	T	T	Sox3.mouse_HMG_2	0	1	+	1.9028761748089562	1.4177411605548484	CAGCAGTGCCATTGTTT
chr6	160138315	160138316	chr6:160138316:C:T	rs117010682	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr6	160139791	160139792	chr6:160139792:G:A	rs34130495	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr6	160272694	160272695	chr6:160272695:A:G	rs599507	A	G	G	Sox3.mouse_HMG_2	4	1	+	2.6845944725748296	-3.70468696180306	CATCAATGTAAGAGAGA
chr6	160272703	160272704	chr6:160272704:G:C	rs599494	G	C	G	Sox3.mouse_HMG_2	13	1	+	2.6845944725748296	-3.7026655663523824	CATCAATGTAAGAGAGA
chr6	160279866	160279867	chr6:160279867:T:C	rs604258	T	C	T	Sox3.mouse_HMG_2	16	1	+	5.574045662924491	3.9710526132640407	CATCGATGTCATTGTGT
chr6	161439442	161439443	chr6:161439443:T:G	chr6:161439443:T:G	T	G	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr6	161452367	161452368	chr6:161452368:T:C	rs61302486	T	C	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr6	161481121	161481122	chr6:161481122:T:C	rs2315314	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr6	161523738	161523739	chr6:161523739:A:G	rs518666	A	G	G	Sox3.mouse_HMG_2	15	1	+	6.936811293497735	6.503073842236394	AATCAATTTCATGGAAA
chr6	161646033	161646034	chr6:161646034:T:C	rs1314095690	T	C	-	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr6	161656398	161656399	chr6:161656399:C:T	rs12206076	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr6	161832667	161832668	chr6:161832668:G:A	rs11962503	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr6	161856351	161856352	chr6:161856352:T:C	rs6931778	T	C	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr6	162268260	162268261	chr6:162268261:G:T	rs778527011	G	T	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr6	162297310	162297311	chr6:162297311:C:G	rs7738783	C	G	C	Sox3.mouse_HMG_2	9	1	+	2.14990438613721	-3.14142433087515	CATCAATGGCATCCGTT
chr6	162326768	162326769	chr6:162326769:C:T	rs7776148	C	T	T	Sox3.mouse_HMG_2	11	1	-	3.8829325212341437	-0.6885516070991424	AATCTATGCTAGTGTTA
chr6	162544522	162544523	chr6:162544523:T:C	rs36022778	T	C	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr6	162545950	162545951	chr6:162545951:A:T	rs71567654	A	T	T	Sox3.mouse_HMG_2	15	1	-	6.860985214210698	4.557595520752013	CTTAAATTCTATTGATA
chr6	162711789	162711790	chr6:162711790:T:C	rs13192618	T	C	T	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr6	162852879	162852880	chr6:162852880:G:A	rs76115844	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr6	163185365	163185366	chr6:163185366:G:T	rs2764000	G	T	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr6	163315469	163315470	chr6:163315470:A:G	rs6903758	A	G	A	Sox3.mouse_HMG_2	16	1	-	6.312269191177656	4.709276141517205	CAACAGTTTTATTGAAT
chr6	163326507	163326508	chr6:163326508:T:C	rs2321513	T	C	C	Sox3.mouse_HMG_2	4	1	-	5.356175089978029	-1.0331063443998596	GGCCAATGGCAGTGAGG
chr6	163352360	163352361	chr6:163352361:A:G	rs9347742	A	G	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr6	163367968	163367969	chr6:163367969:C:G	chr6:163367969:C:G	C	G	C	Sox3.mouse_HMG_2	3	1	+	8.225275414321425	2.1747561044321286	ACTCAATGTCATTCATT
chr6	163381348	163381349	chr6:163381349:A:G	rs1764015	A	G	G	Sox3.mouse_HMG_2	6	1	-	5.048445893397925	-1.3408355409799664	CATCCATGTCAGTGACC
chr6	163423359	163423360	chr6:163423360:T:C	rs2759386	T	C	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr6	163965635	163965636	chr6:163965636:C:G	rs115930247	C	G	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr6	163991484	163991485	chr6:163991485:T:C	rs534401008	T	C	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr6	164131916	164131917	chr6:164131917:T:C	rs58778525	T	C	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr6	164211380	164211381	chr6:164211381:G:A	rs807909	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr6	164300913	164300914	chr6:164300914:G:A	rs7759775	G	A	G	Sox3.mouse_HMG_2	9	1	-	3.183902383625121	3.8765549264970796	TCACAATGTCATGGAAG
chr6	164345683	164345684	chr6:164345684:A:G	rs6930276	A	G	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr6	164908922	164908923	chr6:164908923:T:C	rs1285086031	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr6	165129944	165129945	chr6:165129945:T:C	rs17569276	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr6	165178508	165178509	chr6:165178509:C:T	rs9459321	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr6	165178513	165178514	chr6:165178514:A:G	rs1964430	A	G	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr6	165349774	165349775	chr6:165349775:A:C	rs13211591	A	C	A	Sox3.mouse_HMG_2	5	1	+	2.192707455519579	-4.715367772273477	CTTCAACTCCAGTGGTG
chr6	165349787	165349788	chr6:165349788:C:T	rs9459375	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr6	165625086	165625087	chr6:165625087:T:C	rs56228667	T	C	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr6	165777888	165777889	chr6:165777889:C:T	rs6919206	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr6	165890321	165890322	chr6:165890322:C:A	rs11754381	C	A	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr6	165890347	165890348	chr6:165890348:T:C	rs9365935	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr6	165922234	165922235	chr6:165922235:G:A	rs75340726	G	A	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr6	166445683	166445684	chr6:166445684:G:A	rs112268659	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr6	166776472	166776473	chr6:166776473:T:C	rs9459745	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	166976753	166976754	chr6:166976754:A:G	rs444210	A	G	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr6	167005982	167005983	chr6:167005983:G:C	rs11965188	G	C	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	167099479	167099480	chr6:167099480:G:T	rs9366090	G	T	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr6	167218717	167218718	chr6:167218718:A:T	rs9364899	A	T	A	Sox3.mouse_HMG_2	5	1	+	6.537611767603446	-0.37046346018961235	TATCAATTTTCTTGACA
chr6	167234556	167234557	chr6:167234557:T:C	rs6456165	T	C	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr6	167284607	167284608	chr6:167284608:C:T	rs9459960	C	T	t	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr6	167284618	167284619	chr6:167284619:A:C	rs9457295	A	C	a	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr6	167443009	167443010	chr6:167443010:T:G	rs28548778	T	G	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr6	167735673	167735674	chr6:167735674:A:G	rs9456161	A	G	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr6	167744325	167744326	chr6:167744326:C:A	rs536677	C	A	C	Sox3.mouse_HMG_2	0	1	+	2.9292264699642665	1.5373676937857907	CATCCCTGTTATTGAAG
chr6	167777385	167777386	chr6:167777386:A:C	rs151314912	A	C	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr6	167936127	167936128	chr6:167936128:T:C	rs4708610	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr6	168005148	168005149	chr6:168005149:A:G	rs7773670	A	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr6	168138526	168138527	chr6:168138527:T:A	rs6455488	T	A	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr6	168138561	168138562	chr6:168138562:G:A	rs1490394	G	A	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr6	168182948	168182949	chr6:168182949:C:T	rs73270568	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr6	168353107	168353108	chr6:168353108:C:T	rs185128817	C	T	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr6	168353108	168353109	chr6:168353109:T:G	rs9355203	T	G	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr6	168378057	168378058	chr6:168378058:C:T	rs550283546	C	T	C	Sox3.mouse_HMG_2	3	1	+	1.1839662126894959	-3.672889662532724	GCTCAATGCCCTGGATA
chr6	168390751	168390752	chr6:168390752:T:G	rs4524581	T	G	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr6	168687342	168687343	chr6:168687343:G:A	rs613728	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr6	168708783	168708784	chr6:168708784:T:C	rs686357	T	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr6	168711725	168711726	chr6:168711726:C:A	rs599295	C	A	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr6	168711732	168711733	chr6:168711733:C:T	rs612157	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr6	168742344	168742345	chr6:168742345:G:C	rs183791724	G	C	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr6	168809948	168809949	chr6:168809949:A:G	rs4708495	A	G	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr6	168916888	168916889	chr6:168916889:G:C	rs10945345	G	C	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr6	168965440	168965441	chr6:168965441:C:T	rs4708398	C	T	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr6	169083710	169083711	chr6:169083711:A:G	rs113301269	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr6	169096048	169096049	chr6:169096049:T:G	rs9767441	T	G	T	Sox3.mouse_HMG_2	8	1	+	6.563383139554304	5.749745206550092	GTACAATTTTATAGATT
chr6	169159081	169159082	chr6:169159082:A:G	rs1395249420	A	G	A	Sox3.mouse_HMG_2	10	1	+	7.8073666461664475	0.8986118668512275	CATTAATTTTATTGTTC
chr6	169345614	169345615	chr6:169345615:T:G	rs73034131	T	G	T	Sox3.mouse_HMG_2	1	1	-	4.910430060907705	2.1949885245637675	CATTCATGTTATTGAGT
chr6	169376424	169376425	chr6:169376425:T:C	rs4716370	T	C	C	Sox3.mouse_HMG_2	10	1	-	5.296486193317165	-1.6122685859980552	AGTCAAGGGCATTGAAT
chr6	169539677	169539678	chr6:169539678:G:A	rs80114444	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr6	169881703	169881704	chr6:169881704:G:A	rs925920792	G	A	g	Sox3.mouse_HMG_2	1	1	-	2.6898860371497992	2.7101040144404447	GCTCAATGGCATGGGGG
chr6	169921271	169921272	chr6:169921272:G:A	rs909538100	G	A	-	Sox3.mouse_HMG_2	1	1	+	3.774910745330676	5.7812986873501355	CGTCAGTGGCAGTGACA
chr6	169921300	169921301	chr6:169921301:C:T	rs1041568390	C	T	c	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr6	169921336	169921337	chr6:169921337:T:C	rs1006848441	T	C	c	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr6	169923433	169923434	chr6:169923434:C:T	rs879088426	C	T	c	Sox3.mouse_HMG_2	8	1	-	2.5998370223354046	1.3810466375909087	TGTCAATGGTATTCTGG
chr6	169923694	169923695	chr6:169923695:C:T	rs927718523	C	T	c	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr6	169923834	169923835	chr6:169923835:C:G	rs1190180289	C	G	c	Sox3.mouse_HMG_2	7	1	-	2.954561163996373	-3.6742603310916837	TGACAAAGATAGTGATG
chr6	169923937	169923938	chr6:169923938:C:A	rs927676800	C	A	a	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr6	170076933	170076934	chr6:170076934:G:A	rs148476726	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr6	170138126	170138127	chr6:170138127:T:C	rs3013267	T	C	T	Sox3.mouse_HMG_2	14	1	-	4.827693838183611	1.5096275684120106	CCCCAATTTCAGTGAAT
chr6	170271596	170271597	chr6:170271597:C:T	rs181276894	C	T	C	Sox3.mouse_HMG_2	12	1	-	3.304750747717366	3.6403722824582654	GATCAATGGTGTGGAAT
chr6	170306066	170306067	chr6:170306067:T:C	rs9356634	T	C	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr6	170408332	170408333	chr6:170408333:A:G	rs926221	A	G	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr7	506876	506877	chr7:506877:A:C	rs4074396	A	C	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr7	625445	625446	chr7:625446:A:G	rs150687728	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr7	666984	666985	chr7:666985:A:C	rs897967352	A	C	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr7	920812	920813	chr7:920813:C:T	rs3808343	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr7	1000890	1000891	chr7:1000891:G:A	rs112650357	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr7	1029584	1029585	chr7:1029585:T:C	rs144274703	T	C	T	Sox3.mouse_HMG_2	14	1	+	3.8451402215211186	1.8319931276811188	GATCAATTTTATGGTGC
chr7	1060564	1060565	chr7:1060565:A:G	rs73048394	A	G	a	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr7	1112249	1112250	chr7:1112250:G:T	rs10270249	G	T	G	Sox3.mouse_HMG_2	11	1	+	3.316175042607937	4.696697220021761	TCTCCATGGCAGTGAGG
chr7	1136759	1136760	chr7:1136760:A:C	rs116220010	A	C	a	Sox3.mouse_HMG_2	2	1	-	5.6061272309920405	0.4522525643121466	GATCAGGGGTATTGATT
chr7	1742906	1742907	chr7:1742907:G:A	rs138962782	G	A	G	Sox3.mouse_HMG_2	1	1	+	5.825418341671833	7.831806283691291	CGTCAATATCAGTGAAA
chr7	1983083	1983084	chr7:1983084:G:A	rs118013978	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr7	2037574	2037575	chr7:2037575:T:C	rs73281376	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.9700256043529354	-2.4192558300249556	AATCAATGACAGTAGTA
chr7	2039345	2039346	chr7:2039346:C:T	rs56226325	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr7	2110199	2110200	chr7:2110200:C:T	rs73038485	C	T	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr7	2512090	2512091	chr7:2512091:G:A	rs80006756	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr7	2566270	2566271	chr7:2566271:C:G	rs1550203	C	G	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr7	2682916	2682917	chr7:2682917:A:G	rs57014361	A	G	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr7	2739251	2739252	chr7:2739252:G:A	rs116728629	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr7	2760434	2760435	chr7:2760435:C:T	rs17132655	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr7	3007216	3007217	chr7:3007217:T:C	rs1968923	T	C	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr7	3007232	3007233	chr7:3007233:G:A	rs74555857	G	A	G	Sox3.mouse_HMG_2	13	1	+	3.259330676381071	-2.79230782780524	TTTCCATGCCAGTGAGT
chr7	3199547	3199548	chr7:3199548:G:C	rs7797535	G	C	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr7	3199549	3199550	chr7:3199550:G:A	rs10228184	G	A	G	Sox3.mouse_HMG_2	1	1	+	3.788240994968061	5.794628936987517	AGTGAATGCTATTGGTC
chr7	3244505	3244506	chr7:3244506:T:C	rs10452788	T	C	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr7	3673111	3673112	chr7:3673112:C:T	rs55906803	C	T	c	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr7	3851656	3851657	chr7:3851657:G:T	rs12532912	G	T	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr7	3993928	3993929	chr7:3993929:A:G	rs1025915	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.100585070653305	-3.288696363724586	AAGCAATGCTCTTGATC
chr7	4023094	4023095	chr7:4023095:A:G	rs10228937	A	G	G	Sox3.mouse_HMG_2	6	1	-	2.8355130669176916	-3.553768367460199	CATAAATGGGATTGAAA
chr7	4070417	4070418	chr7:4070418:G:C	rs10248826	G	C	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr7	4734971	4734972	chr7:4734972:A:T	rs28476654	A	T	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr7	4806536	4806537	chr7:4806537:G:A	rs78828628	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr7	5167438	5167439	chr7:5167439:T:C	rs6463300	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr7	5221016	5221017	chr7:5221017:G:A	rs10246437	G	A	G	Sox3.mouse_HMG_2	8	1	+	2.1875388090041614	0.9687484242596645	GCTCAAGTGCAGTGGTA
chr7	5355090	5355091	chr7:5355091:T:G	rs61056534	T	G	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr7	5596644	5596645	chr7:5596645:T:A	rs117689248	T	A	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr7	6020986	6020987	chr7:6020987:A:C	rs2345055	A	C	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr7	6350207	6350208	chr7:6350208:A:G	rs6463551	A	G	G	Sox3.mouse_HMG_2	12	1	-	4.155318895375121	-1.8956482425556958	TTTTAATGTCAATGATA
chr7	6378643	6378644	chr7:6378644:T:C	rs7784465	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr7	6506387	6506388	chr7:6506388:G:A	rs75926488	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr7	6934860	6934861	chr7:6934861:A:C	rs4541804	A	C	.	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr7	6950698	6950699	chr7:6950699:A:G	rs4318979	A	G	.	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr7	7321852	7321853	chr7:7321853:A:G	rs17506507	A	G	A	Sox3.mouse_HMG_2	11	1	+	4.653931930341282	9.225416058674568	TGTCAATGTCAATGTTC
chr7	7386274	7386275	chr7:7386275:G:C	rs1294635	G	C	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr7	7424048	7424049	chr7:7424049:A:G	rs115692596	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr7	7565014	7565015	chr7:7565015:C:T	rs115300490	C	T	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr7	7565024	7565025	chr7:7565025:G:A	rs972600	G	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr7	7641063	7641064	chr7:7641064:G:A	rs28916290	G	A	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr7	7641065	7641066	chr7:7641066:A:C	rs17169194	A	C	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr7	7682014	7682015	chr7:7682015:A:C	rs62432580	A	C	A	Sox3.mouse_HMG_2	12	1	-	4.215105117238458	-2.171483555433258	CAACAATATTAGTGAAC
chr7	7751919	7751920	chr7:7751920:G:A	rs73673805	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr7	7751937	7751938	chr7:7751938:G:A	rs73673806	G	A	G	Sox3.mouse_HMG_2	8	1	-	0.9771070714911678	2.2315290376468373	GATAAATGCCTGTGATC
chr7	7816198	7816199	chr7:7816199:A:G	rs61450886	A	G	A	Sox3.mouse_HMG_2	12	1	-	3.8518767102118074	-2.1990904277190086	CATTAATGTTACTGTTT
chr7	7817221	7817222	chr7:7817222:C:G	rs6957893	C	G	C	Sox3.mouse_HMG_2	8	1	+	5.645803056914849	6.086587090066308	CTTCAATGCCATTTAGT
chr7	7853185	7853186	chr7:7853186:A:G	rs6971178	A	G	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr7	8149240	8149241	chr7:8149241:C:A	rs4720765	C	A	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr7	8509846	8509847	chr7:8509847:C:T	rs2057865	C	T	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr7	8590849	8590850	chr7:8590850:C:G	rs10257762	C	G	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr7	8615219	8615220	chr7:8615220:G:A	rs143178643	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr7	8710573	8710574	chr7:8710574:T:C	rs10280299	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr7	8885746	8885747	chr7:8885747:A:G	rs990589	A	G	G	Sox3.mouse_HMG_2	15	1	-	4.14999814962507	0.3701987321192742	AATCACTGTTATTTATA
chr7	8976421	8976422	chr7:8976422:C:T	rs4725152	C	T	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr7	9138390	9138391	chr7:9138391:C:T	rs1946900	C	T	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr7	9822580	9822581	chr7:9822581:A:T	rs563520754	A	T	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr7	9822592	9822593	chr7:9822593:G:T	rs140577487	G	T	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr7	10129021	10129022	chr7:10129022:A:C	rs17162680	A	C	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr7	10142737	10142738	chr7:10142738:T:C	rs2215607	T	C	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr7	10257637	10257638	chr7:10257638:G:C	rs7808764	G	C	C	Sox3.mouse_HMG_2	15	1	-	3.3939682305833023	4.436640503369072	CATGAATTTTAGTGGCG
chr7	10331138	10331139	chr7:10331139:A:G	rs115527305	A	G	A	Sox3.mouse_HMG_2	1	1	+	2.327515534613102	0.3211275925936438	GATCAAGGGAAGTGAAT
chr7	10343126	10343127	chr7:10343127:T:C	rs13236213	T	C	T	Sox3.mouse_HMG_2	5	1	-	7.8723654733240505	1.483084038946159	GATCAATGATATTGCCT
chr7	11288270	11288271	chr7:11288271:A:C	rs17164254	A	C	A	Sox3.mouse_HMG_2	6	1	-	7.339127671404821	0.43105244361176503	TTTCAATTTTAGGGATT
chr7	11319503	11319504	chr7:11319504:T:C	rs10276882	T	C	C	Sox3.mouse_HMG_2	9	1	+	6.108566464375556	5.415913921503597	GTTCAATTTTGTTGAAA
chr7	11469810	11469811	chr7:11469811:A:G	rs56163655	A	G	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr7	11544993	11544994	chr7:11544994:C:T	rs2107477	C	T	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr7	11544994	11544995	chr7:11544995:A:G	rs2107476	A	G	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	11557759	11557760	chr7:11557760:T:C	rs10229585	T	C	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr7	11716382	11716383	chr7:11716383:G:A	rs62433392	G	A	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr7	11725744	11725745	chr7:11725745:C:G	rs10231480	C	G	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr7	11742928	11742929	chr7:11742929:A:C	rs138379857	A	C	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr7	11934751	11934752	chr7:11934752:G:A	rs4400275	G	A	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr7	11986351	11986352	chr7:11986352:T:C	rs75303544	T	C	T	Sox3.mouse_HMG_2	9	1	+	8.677818297252596	7.985165754380638	CATCAATTCTATAGAAT
chr7	12064773	12064774	chr7:12064774:T:C	rs75627357	T	C	T	Sox3.mouse_HMG_2	5	1	-	5.241635649348501	-1.147645785029389	GCACAATGTTAGTGGCT
chr7	12107674	12107675	chr7:12107675:T:C	rs58246395	T	C	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr7	12133546	12133547	chr7:12133547:C:G	rs1369496	C	G	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr7	12178312	12178313	chr7:12178313:G:A	rs13221595	G	A	G	Sox3.mouse_HMG_2	1	1	-	3.157417405935091	3.1776353832257356	GCTGAATTTCAGTGTTA
chr7	12211933	12211934	chr7:12211934:C:G	rs7781670	C	G	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr7	12211968	12211969	chr7:12211969:C:G	rs73299043	C	G	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr7	12222944	12222945	chr7:12222945:C:T	rs1435527	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr7	12222960	12222961	chr7:12222961:C:G	rs6978684	C	G	C	Sox3.mouse_HMG_2	13	1	-	4.17878176994866	-2.208478268978552	TTTCCATTTTATTGTTT
chr7	12222975	12222976	chr7:12222976:T:C	rs13311466	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr7	12295030	12295031	chr7:12295031:T:A	rs4721078	T	A	T	Sox3.mouse_HMG_2	14	1	-	2.879266986878984	-1.1401145368696612	AATCTATTCCAGTGACT
chr7	12567220	12567221	chr7:12567221:C:G	rs1859989	C	G	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr7	12567225	12567226	chr7:12567226:A:G	rs1859990	A	G	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr7	12588272	12588273	chr7:12588273:G:A	rs76515721	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr7	12718526	12718527	chr7:12718527:G:A	rs4719328	G	A	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr7	12775694	12775695	chr7:12775695:C:T	rs10262101	C	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr7	12863645	12863646	chr7:12863646:T:G	rs4288268	T	G	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr7	12919634	12919635	chr7:12919635:T:C	rs35942853	T	C	T	Sox3.mouse_HMG_2	11	1	+	3.3672321845086968	-3.317142014951638	CAGCTATTCTATTGATC
chr7	12984758	12984759	chr7:12984759:C:G	rs60146115	C	G	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr7	12988537	12988538	chr7:12988538:C:T	rs73303018	C	T	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr7	12988570	12988571	chr7:12988571:A:C	rs7807868	A	C	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr7	13601582	13601583	chr7:13601583:G:C	rs10256816	G	C	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr7	13882118	13882119	chr7:13882119:T:C	rs116912269	T	C	T	Sox3.mouse_HMG_2	15	1	+	2.313943572630365	-1.4658558448754306	TATCAATGTTCTGGGTT
chr7	13904965	13904966	chr7:13904966:G:A	rs73681259	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr7	13990782	13990783	chr7:13990783:G:A	rs571298682	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr7	14447032	14447033	chr7:14447033:A:G	rs10950526	A	G	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr7	14447047	14447048	chr7:14447048:A:G	rs6943928	A	G	A	Sox3.mouse_HMG_2	15	1	-	4.875877234191163	1.0960778166853677	CTACAATGATAATGATA
chr7	14691169	14691170	chr7:14691170:T:G	rs12699655	T	G	t	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr7	15036868	15036869	chr7:15036869:C:T	rs76418432	C	T	C	Sox3.mouse_HMG_2	14	1	-	1.7861826965032646	5.104248966274866	CATCAATGGCATCTGTG
chr7	15084582	15084583	chr7:15084583:A:G	rs17379758	A	G	A	Sox3.mouse_HMG_2	0	1	-	6.583607700603719	7.0687427148578275	TGTAAATTCCATTGATG
chr7	15461583	15461584	chr7:15461584:A:G	rs77479662	A	G	A	Sox3.mouse_HMG_2	9	1	-	2.297600054166291	1.6049475112943317	GATAAATGCTAATGAGA
chr7	15601384	15601385	chr7:15601385:G:A	rs966470	G	A	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr7	15601416	15601417	chr7:15601417:T:C	rs17168881	T	C	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr7	15612275	15612276	chr7:15612276:A:T	rs2237492	A	T	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr7	15629111	15629112	chr7:15629112:C:T	rs17168927	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr7	15652829	15652830	chr7:15652830:G:C	rs77129333	G	C	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr7	15682680	15682681	chr7:15682681:C:G	rs12540302	C	G	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr7	15694048	15694049	chr7:15694049:T:C	rs4721453	T	C	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr7	16027917	16027918	chr7:16027918:G:A	rs6944852	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr7	16038786	16038787	chr7:16038787:G:T	rs12537148	G	T	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr7	16039569	16039570	chr7:16039570:A:T	rs4721467	A	T	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr7	16123148	16123149	chr7:16123149:G:A	rs17359183	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr7	16269461	16269462	chr7:16269462:A:G	chr7:16269462:A:G	A	G	A	Sox3.mouse_HMG_2	6	1	-	6.534004675038834	0.14472324066094594	TCACAATGTTATTGCTG
chr7	16277029	16277030	chr7:16277030:G:C	rs1295129	G	C	C	Sox3.mouse_HMG_2	8	1	+	4.602955540021548	4.1621715068700915	GTTCAAATGCATTGAAA
chr7	16404917	16404918	chr7:16404918:C:A	rs186009387	C	A	C	Sox3.mouse_HMG_2	0	1	-	2.9484422318842363	2.1586737001059397	GATAAATGGTATTTAAG
chr7	16554937	16554938	chr7:16554938:G:C	rs116540265	G	C	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr7	16607106	16607107	chr7:16607107:G:A	rs7788389	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr7	16619800	16619801	chr7:16619801:C:G	rs2286229	C	G	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr7	16668187	16668188	chr7:16668188:G:T	rs77966925	G	T	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr7	16679038	16679039	chr7:16679039:G:A	chr7:16679039:G:A	G	A	G	Sox3.mouse_HMG_2	9	1	-	8.06524158788574	8.757894130757698	TATCAATGACAGTGTGT
chr7	16702605	16702606	chr7:16702606:T:C	rs78383859	T	C	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr7	16712187	16712188	chr7:16712188:A:C	rs11980082	A	C	A	Sox3.mouse_HMG_2	14	1	+	3.2566345433420723	-2.775894074246573	TAACTATTTTATTGACA
chr7	16734981	16734982	chr7:16734982:T:A	rs13245100	T	A	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr7	16741306	16741307	chr7:16741307:A:G	rs864211	A	G	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr7	16850301	16850302	chr7:16850302:T:C	rs1525738	T	C	T	Sox3.mouse_HMG_2	12	1	+	4.928716476452236	-1.1222506614785803	TCTCAATGTCCTTGGTG
chr7	16939335	16939336	chr7:16939336:T:G	rs1405499956	T	G	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr7	17023188	17023189	chr7:17023189:T:C	rs60550274	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr7	17038583	17038584	chr7:17038584:T:A	rs17279471	T	A	T	Sox3.mouse_HMG_2	14	1	-	2.1361203960501673	-1.8832611276984783	CTTCAATCTCACTGATA
chr7	17063411	17063412	chr7:17063412:G:C	rs17346347	G	C	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr7	17098583	17098584	chr7:17098584:T:A	chr7:17098584:T:A	T	A	T	Sox3.mouse_HMG_2	9	1	+	4.20461552417627	-1.7793657357080495	GTTCAATGGTAATAATT
chr7	17368125	17368126	chr7:17368126:T:G	rs74542680	T	G	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr7	18040395	18040396	chr7:18040396:A:G	rs577665482	A	G	A	Sox3.mouse_HMG_2	6	1	-	2.102429225727763	-4.286852208650128	GCTCAATTGTTTAGATT
chr7	18224885	18224886	chr7:18224886:C:T	rs73681731	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr7	18239546	18239547	chr7:18239547:G:A	rs1919317	G	A	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr7	18269289	18269290	chr7:18269290:G:A	rs12672535	G	A	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr7	18296196	18296197	chr7:18296197:T:G	rs1007662982	T	G	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr7	18337639	18337640	chr7:18337640:C:T	rs17347060	C	T	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr7	18866884	18866885	chr7:18866885:A:C	rs146650699	A	C	A	Sox3.mouse_HMG_2	4	1	+	4.320798848668287	-2.587276379124771	ACTCAATGTCAGTGCAA
chr7	18902629	18902630	chr7:18902630:G:A	rs117374369	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr7	19020388	19020389	chr7:19020389:T:G	rs2906044	T	G	g	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr7	19110342	19110343	chr7:19110343:A:G	rs6962319	A	G	a	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr7	19303711	19303712	chr7:19303712:G:C	rs74634124	G	C	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr7	19368798	19368799	chr7:19368799:C:T	rs1045030547	C	T	C	Sox3.mouse_HMG_2	16	1	-	4.494735605733223	4.283161179247973	CCAGAATTTTAGTGATG
chr7	19554540	19554541	chr7:19554541:G:A	rs2192477	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr7	19560791	19560792	chr7:19560792:G:A	rs117215552	G	A	G	Sox3.mouse_HMG_2	1	1	+	2.540352538006239	4.546740480025697	GGTCAACTTCATTTATA
chr7	19576368	19576369	chr7:19576369:A:G	rs10257637	A	G	A	Sox3.mouse_HMG_2	12	1	-	3.351150672982633	-2.6998164649481833	TCTCAATGTTTATGATT
chr7	19576386	19576387	chr7:19576387:C:T	rs4612239	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr7	19961651	19961652	chr7:19961652:G:T	rs13221825	G	T	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr7	20241501	20241502	chr7:20241502:C:A	rs117757442	C	A	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr7	20267391	20267392	chr7:20267392:G:T	rs6975579	G	T	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr7	20267437	20267438	chr7:20267438:G:A	rs6975721	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr7	20270893	20270894	chr7:20270894:C:A	rs1385457063	C	A	C	Sox3.mouse_HMG_2	7	1	-	3.424749987959889	2.298858774114644	GTTCAATGGTATTCCTG
chr7	20291368	20291369	chr7:20291369:G:C	rs76401609	G	C	G	Sox3.mouse_HMG_2	0	1	+	8.49213113359663	8.187497616072442	GATCAATGTCAGAGAGG
chr7	20342050	20342051	chr7:20342051:G:A	rs3807931	G	A	g	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr7	20404097	20404098	chr7:20404098:A:G	rs6972297	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.060927788110043	-3.328353646267849	GAACAATTGCATTCACA
chr7	20649441	20649442	chr7:20649442:A:C	rs6955287	A	C	C	Sox3.mouse_HMG_2	11	1	-	2.9122974399328747	1.531775262519051	CTGCAATGTGATTGAAG
chr7	20987986	20987987	chr7:20987987:T:C	rs10245794	T	C	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr7	21359155	21359156	chr7:21359156:A:G	rs7793253	A	G	A	Sox3.mouse_HMG_2	4	1	+	4.351118613513082	-2.038162820864809	CTTCAATGTCAGGGAAC
chr7	21765583	21765584	chr7:21765584:A:G	rs72657373	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.3972600003393736	-2.9920214340385156	CCTCAATTCCCTTGGTT
chr7	21765596	21765597	chr7:21765597:G:A	rs72657374	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr7	21765608	21765609	chr7:21765609:G:A	rs60554135	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr7	21822440	21822441	chr7:21822441:C:T	chr7:21822441:C:T	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr7	21904103	21904104	chr7:21904104:T:C	rs35898649	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr7	22056816	22056817	chr7:22056817:G:A	rs10260357	G	A	G	Sox3.mouse_HMG_2	5	1	-	2.8970505138833635	2.8970505138833635	CAGCACTTCCAGTGATT
chr7	22124945	22124946	chr7:22124946:T:C	rs56337702	T	C	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr7	22126403	22126404	chr7:22126404:C:T	rs1419755	C	T	T	Sox3.mouse_HMG_2	11	1	-	5.797915070303636	1.2264309419703496	CAGCAATGACAGTGACA
chr7	22601194	22601195	chr7:22601195:C:T	rs140395104	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr7	22662724	22662725	chr7:22662725:C:G	rs2961296	C	G	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr7	22728288	22728289	chr7:22728289:C:G	rs1474348	C	G	G	Sox3.mouse_HMG_2	0	1	-	2.4607958803579866	2.1561623628337987	GCCCAATTTTACTGATG
chr7	22853552	22853553	chr7:22853553:A:T	rs28431944	A	T	A	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr7	22868092	22868093	chr7:22868093:T:C	rs57544794	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.360934848695109	-4.0283465856827805	GATCAATGGTGATGGTG
chr7	23022606	23022607	chr7:23022607:C:T	rs148850755	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr7	23022650	23022651	chr7:23022651:C:T	rs1441229413	C	T	c	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr7	23022651	23022652	chr7:23022652:G:A	rs77520274	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr7	23411868	23411869	chr7:23411869:C:T	rs189221807	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr7	24036189	24036190	chr7:24036190:C:T	rs2042500	C	T	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr7	24214060	24214061	chr7:24214061:A:G	rs2172676	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr7	24318580	24318581	chr7:24318581:G:A	rs6461791	G	A	G	Sox3.mouse_HMG_2	13	1	+	1.7654308519091457	-4.286207652277167	GCTCAAAGTCATTGCTC
chr7	24858234	24858235	chr7:24858235:G:A	rs6955303	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr7	24899175	24899176	chr7:24899176:C:G	rs117427275	C	G	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr7	24971831	24971832	chr7:24971832:T:C	rs537108862	T	C	T	Sox3.mouse_HMG_2	8	1	+	5.056721911549436	3.8022999453937687	TATCACTGTTATTCATA
chr7	25176496	25176497	chr7:25176497:T:C	rs12700593	T	C	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr7	25259984	25259985	chr7:25259985:G:C	rs62451646	G	C	G	Sox3.mouse_HMG_2	0	1	+	4.526618435651322	4.221984918127134	GCACAATGTCAGTGTGG
chr7	25325780	25325781	chr7:25325781:A:G	rs10281820	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr7	25477431	25477432	chr7:25477432:C:T	rs17150487	C	T	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr7	25522251	25522252	chr7:25522252:C:T	rs6977303	C	T	C	Sox3.mouse_HMG_2	16	1	-	4.741091236681527	4.529516810196276	AAACAATTGCAGTGGAG
chr7	25896126	25896127	chr7:25896127:C:A	rs73081656	C	A	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr7	25970612	25970613	chr7:25970613:C:T	rs10267354	C	T	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr7	25970625	25970626	chr7:25970626:G:C	rs10267565	G	C	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr7	26182223	26182224	chr7:26182224:A:G	rs980385775	A	G	A	Sox3.mouse_HMG_2	0	1	-	2.860074168620665	3.3452091828747723	TCTCAGTGTTATTTATA
chr7	26349003	26349004	chr7:26349004:A:G	rs10267867	A	G	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr7	26398014	26398015	chr7:26398015:G:A	rs1019782332	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr7	26523403	26523404	chr7:26523404:C:T	rs10253181	C	T	C	Sox3.mouse_HMG_2	3	1	+	3.8378251220261834	-1.0190307531960379	TCTCTATTTTATTGAGC
chr7	26574541	26574542	chr7:26574542:A:G	rs529857803	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	26991979	26991980	chr7:26991980:C:T	rs118188233	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	27186197	27186198	chr7:27186198:A:C	rs141152665	A	C	A	Sox3.mouse_HMG_2	14	1	-	3.6588948861572925	4.3602101401343365	CCTCAATTGCATGGTTT
chr7	28203566	28203567	chr7:28203567:T:C	rs10263934	T	C	T	Sox3.mouse_HMG_2	11	1	+	9.618308041154476	2.933933841694141	GTACAATTTCATTGAAT
chr7	28585720	28585721	chr7:28585721:T:C	rs60855128	T	C	T	Sox3.mouse_HMG_2	4	1	-	2.0840869542481557	-4.305194480129734	GAACAATTCTGGTGGTG
chr7	28685918	28685919	chr7:28685919:G:A	rs757980	G	A	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr7	28866225	28866226	chr7:28866226:T:C	rs11763355	T	C	C	Sox3.mouse_HMG_2	9	1	+	5.437003519530673	4.744350976658714	TGTTAATGATATTGTTA
chr7	28866236	28866237	chr7:28866237:G:A	rs73294992	G	A	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr7	28939492	28939493	chr7:28939493:T:C	rs221137	T	C	T	Sox3.mouse_HMG_2	12	1	+	1.8860800918426277	-4.1648870460881895	GATGGATGTCAGTGGTT
chr7	28950056	28950057	chr7:28950057:C:T	rs75395053	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr7	29082296	29082297	chr7:29082297:G:A	rs67639176	G	A	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr7	29306663	29306664	chr7:29306664:T:C	rs39114	T	C	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr7	29349679	29349680	chr7:29349680:G:A	rs990376	G	A	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr7	29463139	29463140	chr7:29463140:G:T	rs6973713	G	T	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr7	29649210	29649211	chr7:29649211:T:C	rs1641209	T	C	c	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr7	30237169	30237170	chr7:30237170:C:T	rs112179741	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr7	30379522	30379523	chr7:30379523:C:T	rs6959986	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr7	30989624	30989625	chr7:30989625:G:C	rs78765106	G	C	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr7	31136791	31136792	chr7:31136792:T:C	rs77912590	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.514310849683573	-3.874970584694316	TATCAATGGTTTTCAAT
chr7	31183048	31183049	chr7:31183049:A:G	rs11543666	A	G	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr7	31188472	31188473	chr7:31188473:C:G	rs11976529	C	G	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr7	31318445	31318446	chr7:31318446:G:A	rs1558434	G	A	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr7	31337754	31337755	chr7:31337755:T:G	rs10238918	T	G	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr7	31692539	31692540	chr7:31692540:T:C	rs142761417	T	C	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr7	31729618	31729619	chr7:31729619:G:C	rs6979462	G	C	G	Sox3.mouse_HMG_2	16	1	+	4.579706281136264	3.3404349211097593	CATCAAGTGTATTGGAG
chr7	31885418	31885419	chr7:31885419:T:C	rs116213572	T	C	T	Sox3.mouse_HMG_2	11	1	+	2.929249485614191	-3.755124713846145	GTGCAATTTCATTGTGG
chr7	31956483	31956484	chr7:31956484:G:C	rs73686851	G	C	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr7	32283487	32283488	chr7:32283488:T:C	rs17161132	T	C	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr7	32472188	32472189	chr7:32472189:T:G	rs17362028	T	G	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr7	33092116	33092117	chr7:33092117:G:A	rs12667900	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr7	33381629	33381630	chr7:33381630:A:G	rs12668181	A	G	A	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr7	33675691	33675692	chr7:33675692:A:G	rs75903717	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr7	33822342	33822343	chr7:33822343:A:T	chr7:33822343:A:T	A	T	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr7	33885522	33885523	chr7:33885523:A:T	rs35299075	A	T	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr7	33933302	33933303	chr7:33933303:T:G	rs558609521	T	G	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr7	34063940	34063941	chr7:34063941:C:A	rs1420328	C	A	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr7	34088222	34088223	chr7:34088223:G:A	rs566879631	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr7	34660441	34660442	chr7:34660442:A:G	rs11761093	A	G	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr7	34826102	34826103	chr7:34826103:G:A	rs17789642	G	A	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr7	35025914	35025915	chr7:35025915:A:C	rs329255	A	C	.	Sox3.mouse_HMG_2	6	1	-	5.244521181767025	-1.6635540460260319	GACCAATGTCAGTGCTT
chr7	35255879	35255880	chr7:35255880:T:C	rs1003549	T	C	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr7	35256168	35256169	chr7:35256169:A:C	rs28561590	A	C	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr7	35262405	35262406	chr7:35262406:C:G	rs1362209	C	G	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr7	35276836	35276837	chr7:35276837:A:T	rs17675327	A	T	A	Sox3.mouse_HMG_2	13	1	+	3.7371764835297165	3.4015549487888164	AATCAATCTTATTAATC
chr7	35482252	35482253	chr7:35482253:G:A	rs10242913	G	A	G	Sox3.mouse_HMG_2	7	1	+	2.288840704660525	-4.339980790427533	CCTCAAAGGTATTGTAG
chr7	35839988	35839989	chr7:35839989:T:A	rs2249906	T	A	A	Sox3.mouse_HMG_2	7	1	+	4.506126813823387	-0.996803467419423	TATCATTTTTATTTATT
chr7	36109041	36109042	chr7:36109042:C:A	rs10246132	C	A	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr7	36311671	36311672	chr7:36311672:C:T	rs111924802	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr7	36464460	36464461	chr7:36464461:T:C	rs17170599	T	C	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr7	36637035	36637036	chr7:36637036:A:G	rs73687593	A	G	a	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr7	36828404	36828405	chr7:36828405:T:C	rs6969810	T	C	T	Sox3.mouse_HMG_2	7	1	+	3.037770542409094	-2.465159738833717	CATAAATTATAATGATG
chr7	36844521	36844522	chr7:36844522:A:G	rs6462716	A	G	G	Sox3.mouse_HMG_2	1	1	+	4.745330078524623	2.738942136505167	TATGAATGTTAGTCATG
chr7	37033732	37033733	chr7:37033733:T:C	rs928104302	T	C	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr7	37446637	37446638	chr7:37446638:C:A	rs150631954	C	A	C	Sox3.mouse_HMG_2	5	1	-	2.0430207360412758	1.524226942626109	GGGCAGTTCTAGTGATG
chr7	38213262	38213263	chr7:38213263:G:A	rs12531618	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr7	38399508	38399509	chr7:38399509:G:A	rs76567669	G	A	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr7	38557396	38557397	chr7:38557397:C:T	rs73124276	C	T	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr7	38682543	38682544	chr7:38682544:T:A	rs62442613	T	A	T	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr7	38710235	38710236	chr7:38710236:A:T	rs1978172	A	T	a	Sox3.mouse_HMG_2	11	1	-	4.419728868566217	-1.532277437180892	GACCAATGATATTGTAA
chr7	38776337	38776338	chr7:38776338:T:C	rs78493385	T	C	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr7	38776344	38776345	chr7:38776345:G:C	rs11765467	G	C	C	Sox3.mouse_HMG_2	6	1	+	4.5942525344343474	5.113046327849514	GATCAAGTTCATTGCTG
chr7	39083724	39083725	chr7:39083725:G:A	rs17171531	G	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr7	39287868	39287869	chr7:39287869:G:T	rs4345472	G	T	G	Sox3.mouse_HMG_2	0	1	-	3.8523621826174423	2.460503406438967	CGTCAAGGCCAGTGGTT
chr7	39559707	39559708	chr7:39559708:C:T	rs7777969	C	T	C	Sox3.mouse_HMG_2	15	1	-	1.8513103259458137	2.2850477772071547	GGTCAATGGTGGTGTGT
chr7	39622733	39622734	chr7:39622734:T:C	rs73689214	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr7	39810331	39810332	chr7:39810332:C:T	rs4720341	C	T	.	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr7	40361776	40361777	chr7:40361777:G:A	rs6462979	G	A	A	Sox3.mouse_HMG_2	2	1	+	4.469446043561411	6.341663934457765	TAGCAATTGAAGTGATT
chr7	40641376	40641377	chr7:40641377:T:C	rs7459324	T	C	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr7	40780807	40780808	chr7:40780808:C:A	rs55744420	C	A	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr7	40781320	40781321	chr7:40781321:A:G	rs12154576	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr7	40831171	40831172	chr7:40831172:C:T	rs10247275	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr7	40922256	40922257	chr7:40922257:T:G	rs11765424	T	G	T	Sox3.mouse_HMG_2	14	1	-	2.9772034653529236	-3.0553251522357217	GATCAATTTTACAGAAA
chr7	41097374	41097375	chr7:41097375:C:T	rs116235239	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr7	41243506	41243507	chr7:41243507:G:A	rs35759722	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr7	41829073	41829074	chr7:41829074:G:A	rs7798456	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr7	41936545	41936546	chr7:41936546:T:C	rs62441498	T	C	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr7	41936562	41936563	chr7:41936563:G:A	rs1056193	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr7	41975564	41975565	chr7:41975565:G:A	rs7794414	G	A	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr7	41980270	41980271	chr7:41980271:A:C	rs10486730	A	C	A	Sox3.mouse_HMG_2	10	1	+	4.001048817995772	-2.907705961319448	GCTCCATGTCAGTGTTT
chr7	42078668	42078669	chr7:42078669:A:G	rs140031849	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr7	42095895	42095896	chr7:42095896:C:G	rs3779146	C	G	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr7	42162626	42162627	chr7:42162627:T:C	rs78630417	T	C	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr7	42162644	42162645	chr7:42162645:C:G	rs117013558	C	G	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr7	42181705	42181706	chr7:42181706:G:A	rs3779173	G	A	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr7	42415322	42415323	chr7:42415323:A:G	rs117011776	A	G	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr7	42574647	42574648	chr7:42574648:T:G	rs192673816	T	G	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr7	43044828	43044829	chr7:43044829:A:T	rs79849598	A	T	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr7	43135442	43135443	chr7:43135443:A:C	rs78180753	A	C	A	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr7	43431194	43431195	chr7:43431195:T:C	rs777395463	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr7	43731519	43731520	chr7:43731520:A:G	rs28412519	A	G	a	Sox3.mouse_HMG_2	4	1	+	3.4557774750882735	-2.933503959289617	AAACAATGTCCTTGGTG
chr7	44638078	44638079	chr7:44638079:C:T	rs116046892	C	T	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr7	44638081	44638082	chr7:44638082:C:A	rs112127822	C	A	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr7	44656125	44656126	chr7:44656126:T:C	rs2268314	T	C	C	Sox3.mouse_HMG_2	10	1	-	6.6268214229970495	-0.28193335631817185	GGTCAATTTTATTAAAC
chr7	44684226	44684227	chr7:44684227:A:G	rs7797184	A	G	A	Sox3.mouse_HMG_2	5	1	+	1.7082344450322215	-4.681046989345668	TCCCAATGGCATTGGGA
chr7	45024440	45024441	chr7:45024441:G:C	rs884082	G	C	G	Sox3.mouse_HMG_2	16	1	-	3.9113309651423203	5.150602325168825	TGACAATGACAGTGTTC
chr7	45025322	45025323	chr7:45025323:C:T	rs1859487	C	T	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr7	45187692	45187693	chr7:45187693:C:G	rs17172492	C	G	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr7	45187722	45187723	chr7:45187723:C:T	rs13229410	C	T	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr7	45187724	45187725	chr7:45187725:A:G	rs35758250	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr7	45189716	45189717	chr7:45189717:G:A	rs10951805	G	A	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr7	45312113	45312114	chr7:45312114:A:T	rs73105947	A	T	a	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr7	45565942	45565943	chr7:45565943:C:T	rs73318920	C	T	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr7	45633223	45633224	chr7:45633224:G:A	rs12112588	G	A	A	Sox3.mouse_HMG_2	10	1	+	3.1806598321511066	10.089414611466328	GGCCAATGCTGTTGATT
chr7	45882753	45882754	chr7:45882754:C:T	rs73104683	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr7	45980022	45980023	chr7:45980023:C:T	rs1723959	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr7	46034050	46034051	chr7:46034051:C:G	rs1540824	C	G	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr7	46107525	46107526	chr7:46107526:C:T	rs146074069	C	T	C	Sox3.mouse_HMG_2	13	1	-	1.024421708357757	-5.027216795828555	CCCCAATGGCAGTGGGG
chr7	46110133	46110134	chr7:46110134:A:G	rs788780	A	G	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr7	46126904	46126905	chr7:46126905:C:G	rs13231830	C	G	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr7	46133527	46133528	chr7:46133528:T:C	rs6970565	T	C	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr7	46156424	46156425	chr7:46156425:C:A	rs17502974	C	A	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr7	46156430	46156431	chr7:46156431:G:A	rs35117205	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr7	46156447	46156448	chr7:46156448:C:G	rs79350915	C	G	C	Sox3.mouse_HMG_2	0	1	-	1.7189788528431964	1.4143453353190085	GAGCAAGTTCAGTGAGT
chr7	46206676	46206677	chr7:46206677:G:A	rs114615235	G	A	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr7	46206682	46206683	chr7:46206683:C:A	rs537948336	C	A	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr7	46233652	46233653	chr7:46233653:C:A	rs1601540	C	A	C	Sox3.mouse_HMG_2	13	1	-	5.335452435010633	-1.0518076039165785	GATCAAATTGATTGATG
chr7	46247713	46247714	chr7:46247714:C:T	rs28696071	C	T	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr7	46350010	46350011	chr7:46350011:T:C	rs80039990	T	C	C	Sox3.mouse_HMG_2	10	1	-	6.435738482825098	-0.47301629649012084	TAACAATTATATTAATT
chr7	46383601	46383602	chr7:46383602:G:T	rs1462279	G	T	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr7	46559248	46559249	chr7:46559249:G:A	rs12534559	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr7	46589433	46589434	chr7:46589434:A:G	rs10258175	A	G	A	Sox3.mouse_HMG_2	10	1	+	4.716291350344627	-2.192463428970592	AAACAATGATATTTATC
chr7	46606923	46606924	chr7:46606924:C:T	chr7:46606924:C:T	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr7	46626059	46626060	chr7:46626060:G:A	rs12535934	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr7	46654754	46654755	chr7:46654755:G:A	rs113275110	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	47000893	47000894	chr7:47000894:G:A	rs28375712	G	A	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr7	47087142	47087143	chr7:47087143:A:G	rs13228012	A	G	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr7	47139763	47139764	chr7:47139764:A:T	rs1583674	A	T	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr7	47183967	47183968	chr7:47183968:G:A	rs10499658	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr7	47228244	47228245	chr7:47228245:C:T	rs146136416	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr7	47309627	47309628	chr7:47309628:G:A	rs114336488	G	A	g	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr7	47433566	47433567	chr7:47433567:T:G	rs187084517	T	G	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr7	47458765	47458766	chr7:47458766:G:A	rs2941549	G	A	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr7	47509571	47509572	chr7:47509572:G:A	rs182838	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr7	47561483	47561484	chr7:47561484:C:T	rs12155302	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr7	47663692	47663693	chr7:47663693:C:T	rs34843472	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr7	47699711	47699712	chr7:47699712:C:T	rs534604609	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr7	47710784	47710785	chr7:47710785:G:A	rs6968309	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr7	47787208	47787209	chr7:47787209:A:G	rs62448550	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr7	48031060	48031061	chr7:48031061:C:T	rs1915968	C	T	T	Sox3.mouse_HMG_2	11	1	-	1.5780378658447323	-2.9934462624885523	GACCAATGTCAGGGAGA
chr7	48085233	48085234	chr7:48085234:T:C	rs11971012	T	C	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr7	48110723	48110724	chr7:48110724:T:C	rs112645772	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr7	48111840	48111841	chr7:48111841:A:G	rs74933975	A	G	A	Sox3.mouse_HMG_2	4	1	+	3.1755063878978396	-3.2137750464800487	TGTCAATTGCAGAGGTG
chr7	48115909	48115910	chr7:48115910:G:A	rs7784208	G	A	A	Sox3.mouse_HMG_2	7	1	+	4.745111657186796	-1.8837098379012607	TATTAATGGTGTTGATC
chr7	48431836	48431837	chr7:48431837:C:T	rs7357104	C	T	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr7	48511742	48511743	chr7:48511743:C:A	rs4144065	C	A	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr7	48680999	48681000	chr7:48681000:A:G	rs35316325	A	G	A	Sox3.mouse_HMG_2	6	1	-	4.328732333228327	-2.060549101149563	CATTAATTGAATTGAAT
chr7	48875228	48875229	chr7:48875229:C:A	rs17132754	C	A	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	48901929	48901930	chr7:48901930:C:T	rs58956104	C	T	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr7	48964284	48964285	chr7:48964285:C:G	rs17132832	C	G	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr7	50136057	50136058	chr7:50136058:G:A	rs12718244	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr7	50136084	50136085	chr7:50136085:C:T	rs12672941	C	T	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr7	50147415	50147416	chr7:50147416:C:T	rs1870030	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr7	50178253	50178254	chr7:50178254:G:T	rs1037674	G	T	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr7	50214243	50214244	chr7:50214244:C:T	chr7:50214244:C:T	C	T	C	Sox3.mouse_HMG_2	3	1	+	2.4585533899357177	-2.3983024852865036	TGTCAAATCCAGTGAGG
chr7	50263052	50263053	chr7:50263053:G:A	rs762293009	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr7	50406617	50406618	chr7:50406618:G:C	rs79198599	G	C	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr7	50477323	50477324	chr7:50477324:A:G	rs896309	A	G	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr7	50497275	50497276	chr7:50497276:A:G	rs1046189686	A	G	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr7	50744187	50744188	chr7:50744188:C:T	rs12718869	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr7	50806321	50806322	chr7:50806322:C:T	rs7802338	C	T	c	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr7	50806336	50806337	chr7:50806337:C:T	rs148853173	C	T	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr7	50859077	50859078	chr7:50859078:G:A	rs7789720	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr7	51163252	51163253	chr7:51163253:C:A	rs7792847	C	A	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr7	51439860	51439861	chr7:51439861:C:T	rs28778375	C	T	c	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr7	51452453	51452454	chr7:51452454:T:C	rs10268810	T	C	T	Sox3.mouse_HMG_2	1	1	-	4.252167216510306	2.245779274490848	TATCAAGGTTAGGGATT
chr7	51452462	51452463	chr7:51452463:C:T	rs12669861	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr7	51551699	51551700	chr7:51551700:G:C	rs35721711	G	C	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr7	51568592	51568593	chr7:51568593:A:G	chr7:51568593:A:G	A	G	A	Sox3.mouse_HMG_2	2	1	-	3.4279282797064066	-2.9389690268193385	TTTCAATTATTTTGAGT
chr7	52439385	52439386	chr7:52439386:A:G	rs12718640	A	G	T	Sox3.mouse_HMG_2	11	1	-	2.379614099204922	-4.304760100255412	GCTGAGTTTCATTGATG
chr7	52439391	52439392	chr7:52439392:C:T	rs12718641	C	T	T	Sox3.mouse_HMG_2	5	1	-	2.379614099204922	8.768895533582812	GCTGAGTTTCATTGATG
chr7	52536511	52536512	chr7:52536512:C:T	rs10240307	C	T	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr7	52708849	52708850	chr7:52708850:T:C	rs1649715	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr7	52786271	52786272	chr7:52786272:C:G	rs117102747	C	G	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr7	52834703	52834704	chr7:52834704:A:G	rs2965626	A	G	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr7	53191705	53191706	chr7:53191706:T:C	rs1357965	T	C	N	Sox3.mouse_HMG_2	4	1	-	5.30590324006822	-1.0833781943096747	GATCAATTTTATTTTAA
chr7	53624468	53624469	chr7:53624469:A:G	rs17135909	A	G	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr7	53659132	53659133	chr7:53659133:C:T	rs10225959	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr7	53672485	53672486	chr7:53672486:T:G	rs76591107	T	G	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr7	54351417	54351418	chr7:54351418:G:A	rs1917576	G	A	A	Sox3.mouse_HMG_2	3	1	-	2.74956026437349	-2.1072956108487335	TATCATTTCCATTGGAA
chr7	54351436	54351437	chr7:54351437:C:G	rs55925666	C	G	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr7	54550316	54550317	chr7:54550317:C:T	rs2293343	C	T	c	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr7	55067779	55067780	chr7:55067780:C:T	rs1468724	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr7	55074960	55074961	chr7:55074961:A:G	rs3800827	A	G	A	Sox3.mouse_HMG_2	8	1	-	3.3586062151207496	2.10418424896508	CATGAATGTGATTGTTT
chr7	55074966	55074967	chr7:55074967:A:G	rs79186456	A	G	A	Sox3.mouse_HMG_2	2	1	-	3.3586062151207496	-3.0082910914049936	CATGAATGTGATTGTTT
chr7	55139167	55139168	chr7:55139168:G:T	rs887824	G	T	G	Sox3.mouse_HMG_2	13	1	+	4.953363334415673	-1.4338967045115394	GATCAACGTTATTGTCA
chr7	55167651	55167652	chr7:55167652:C:T	rs73137522	C	T	T	Sox3.mouse_HMG_2	15	1	+	3.2745074949320467	7.054306912437842	TCACAATGGTAGTGGCG
chr7	55206390	55206391	chr7:55206391:T:C	rs884225	T	C	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr7	55306338	55306339	chr7:55306339:A:G	rs1554719	A	G	A	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr7	55369393	55369394	chr7:55369394:A:G	rs4143242	A	G	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr7	55369413	55369414	chr7:55369414:A:G	rs181937478	A	G	A	Sox3.mouse_HMG_2	9	1	-	4.666530601790942	3.9738780589189826	GGATAATTTTATTGACT
chr7	55536705	55536706	chr7:55536706:A:C	rs17565995	A	C	A	Sox3.mouse_HMG_2	14	1	+	6.450713874183462	0.41818525659481703	GAACAATGACACTGATA
chr7	55594494	55594495	chr7:55594495:A:C	rs62455057	A	C	C	Sox3.mouse_HMG_2	2	1	+	2.627997396992371	-0.4572431337498369	CAACAACTGCAGTGAGG
chr7	55823032	55823033	chr7:55823033:G:A	rs73354524	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr7	55912958	55912959	chr7:55912959:C:T	rs111375108	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr7	56125949	56125950	chr7:56125950:C:T	rs10499761	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr7	56286679	56286680	chr7:56286680:C:T	rs117126626	C	T	.	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr7	56806631	56806632	chr7:56806632:G:A	rs148648344	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr7	56937451	56937452	chr7:56937452:G:C	rs111973101	G	C	G	Sox3.mouse_HMG_2	13	1	+	2.3054293813607547	-4.081830657566457	CATTAATGGCAGAGAGA
chr7	57200842	57200843	chr7:57200843:C:T	rs11971540	C	T	-	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr7	57329003	57329004	chr7:57329004:C:T	rs73699759	C	T	c	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr7	57782111	57782112	chr7:57782112:T:C	rs62459334	T	C	.	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr7	62309165	62309166	chr7:62309166:T:G	rs1353083403	T	G	.	Sox3.mouse_HMG_2	0	1	-	4.1933697735898345	5.585228549768311	AATCAATTTCATTCGAT
chr7	62350272	62350273	chr7:62350273:T:C	rs79542864	T	C	.	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr7	62397068	62397069	chr7:62397069:G:A	rs879136826	G	A	N	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr7	64471173	64471174	chr7:64471174:C:A	rs80216832	C	A	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr7	64860988	64860989	chr7:64860989:A:G	rs1965558	A	G	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr7	65806720	65806721	chr7:65806721:C:T	rs75300537	C	T	.	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr7	66034843	66034844	chr7:66034844:A:G	rs28638468	A	G	.	Sox3.mouse_HMG_2	5	1	+	6.926381393157679	0.5370999587797896	TATCAATGTCATTTGTC
chr7	66152983	66152984	chr7:66152984:G:A	rs316305	G	A	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr7	66773147	66773148	chr7:66773148:A:T	chr7:66773148:A:T	A	T	a	Sox3.mouse_HMG_2	14	1	+	2.7864560571939707	-1.2329254665546745	TGTCATTTGTAGTGAAC
chr7	66960638	66960639	chr7:66960639:C:T	rs17748198	C	T	C	Sox3.mouse_HMG_2	13	1	-	3.3527992847502612	-2.6988392194360507	GGGAAATGTTATTGAAT
chr7	67067306	67067307	chr7:67067307:G:C	chr7:67067307:G:C	G	C	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr7	67137541	67137542	chr7:67137542:A:G	rs79302106	A	G	A	Sox3.mouse_HMG_2	2	1	+	4.0078205696560465	2.1356026787596933	AAACAATTCCATTGGGC
chr7	67448097	67448098	chr7:67448098:T:C	rs78299258	T	C	T	Sox3.mouse_HMG_2	15	1	+	0.8980004976841004	-2.8817989198216956	GGTCACTTGCCTTGATG
chr7	67793802	67793803	chr7:67793803:T:A	rs7781614	T	A	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr7	68125862	68125863	chr7:68125863:C:T	rs6979453	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr7	68191031	68191032	chr7:68191032:G:T	rs10272336	G	T	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr7	68265552	68265553	chr7:68265553:T:C	rs3113130	T	C	C	Sox3.mouse_HMG_2	10	1	-	2.6974660610076207	-4.211288718307601	GGGCAATGCTAGTGGAC
chr7	68321034	68321035	chr7:68321035:G:A	rs148257377	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr7	68511671	68511672	chr7:68511672:A:G	rs1879839	A	G	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr7	68873970	68873971	chr7:68873971:C:T	rs12334191	C	T	T	Sox3.mouse_HMG_2	8	1	+	2.215956577730712	3.4703785438863823	CATGAAAGCTAGTGATC
chr7	68943460	68943461	chr7:68943461:C:T	rs7799061	C	T	C	Sox3.mouse_HMG_2	2	1	-	2.610333218006434	4.48255110890279	CAGCAGTTCTATTGAAA
chr7	69061853	69061854	chr7:69061854:T:C	rs12671836	T	C	T	Sox3.mouse_HMG_2	10	1	-	8.611183987379947	1.7024292080647259	TCTCAAGGTCATTGATT
chr7	69127265	69127266	chr7:69127266:T:C	rs7790352	T	C	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr7	69182723	69182724	chr7:69182724:C:T	rs1195255	C	T	t	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr7	69239406	69239407	chr7:69239407:T:C	rs6953746	T	C	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr7	69261747	69261748	chr7:69261748:G:A	rs62454810	G	A	G	Sox3.mouse_HMG_2	3	1	-	2.281364410589919	-2.5754914646323024	TTTCAGTGGCATTGGGT
chr7	69501790	69501791	chr7:69501791:T:C	rs9791418	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr7	69845807	69845808	chr7:69845808:T:C	rs78351301	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr7	70132085	70132086	chr7:70132086:G:A	rs7783592	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr7	70387780	70387781	chr7:70387781:T:C	rs75501049	T	C	T	Sox3.mouse_HMG_2	10	1	-	6.519355096007961	-0.38939968330726077	GGGCAATGACATTGAGA
chr7	70566581	70566582	chr7:70566582:G:C	rs2214715	G	C	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr7	70744956	70744957	chr7:70744957:C:T	rs6942750	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr7	70863672	70863673	chr7:70863673:G:A	rs12670316	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr7	70889385	70889386	chr7:70889386:C:T	rs1534346	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr7	70900256	70900257	chr7:70900257:A:G	rs10950223	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.381639023774928	-4.00764241060296	TATCTATTTTGTTGATC
chr7	70919950	70919951	chr7:70919951:T:C	rs10434985	T	C	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr7	71130342	71130343	chr7:71130343:T:C	rs62459616	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.6696734024345403	-2.7196080319433493	TTTCAATTTCAGAGAGA
chr7	71402758	71402759	chr7:71402759:A:C	rs34419262	A	C	A	Sox3.mouse_HMG_2	6	1	-	4.079571285651679	-2.828503942141378	AAACAATGCCAGTGTGA
chr7	71470766	71470767	chr7:71470767:A:G	rs10264348	A	G	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr7	71556002	71556003	chr7:71556003:A:T	rs62459955	A	T	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr7	71729135	71729136	chr7:71729136:A:G	rs517781	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr7	71739538	71739539	chr7:71739539:T:C	rs73177692	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr7	71752030	71752031	chr7:71752031:T:C	rs10235229	T	C	T	Sox3.mouse_HMG_2	2	1	+	4.311867010979362	-2.0550302955463846	GTTCAATGTTATTTTAT
chr7	71752033	71752034	chr7:71752034:A:G	rs10232040	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.311867010979362	-2.0774144233985283	GTTCAATGTTATTTTAT
chr7	71768384	71768385	chr7:71768385:C:A	rs992124	C	A	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr7	72366949	72366950	chr7:72366950:T:C	rs2944799	T	C	t	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr7	72542865	72542866	chr7:72542866:G:A	rs10229194	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr7	74352481	74352482	chr7:74352482:A:C	rs56199878	A	C	A	Sox3.mouse_HMG_2	5	1	+	2.7042025467602095	-4.203872681032848	CATCAAAGATAGTTATT
chr7	74628494	74628495	chr7:74628495:A:C	rs111361634	A	C	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr7	74988728	74988729	chr7:74988729:C:T	rs587657421	C	T	C	Sox3.mouse_HMG_2	0	1	+	2.7470436353785206	2.2619086211244137	CGACCATGACAGTGATG
chr7	75743660	75743661	chr7:75743661:T:C	rs1859293	T	C	C	Sox3.mouse_HMG_2	1	1	-	3.502693100759112	1.4963051587396536	AAGCAATGTTATTAAGA
chr7	76291361	76291362	chr7:76291362:T:G	rs569850910	T	G	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr7	76302590	76302591	chr7:76302591:G:T	rs553127513	G	T	G	Sox3.mouse_HMG_2	7	1	+	2.228649527021547	1.1027583131763024	GGTCATTGCCATTAATA
chr7	76924845	76924846	chr7:76924846:A:G	rs10255719	A	G	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr7	77395596	77395597	chr7:77395597:T:G	rs1006596164	T	G	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr7	77651996	77651997	chr7:77651997:G:A	rs4498465	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr7	78055498	78055499	chr7:78055499:C:T	rs3779325	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr7	78055504	78055505	chr7:78055505:T:C	rs3779324	T	C	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr7	78207405	78207406	chr7:78207406:G:T	rs10256412	G	T	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr7	78215679	78215680	chr7:78215680:A:G	rs78573562	A	G	A	Sox3.mouse_HMG_2	4	1	+	3.597381656448343	-2.791899777929544	AATCATCTTTATTGATT
chr7	78311285	78311286	chr7:78311286:G:C	rs798287	G	C	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr7	78413751	78413752	chr7:78413752:A:G	rs138417935	A	G	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr7	78449107	78449108	chr7:78449108:C:A	rs117460038	C	A	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr7	78498440	78498441	chr7:78498441:T:A	rs4730332	T	A	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr7	79347492	79347493	chr7:79347493:T:C	rs848932	T	C	T	Sox3.mouse_HMG_2	5	1	-	6.900141526333264	0.5108600919553744	TCTCAATGTCAATGAAG
chr7	79660712	79660713	chr7:79660713:A:G	rs2689818	A	G	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr7	79773234	79773235	chr7:79773235:C:T	rs10499847	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr7	80549297	80549298	chr7:80549298:C:T	rs112905381	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr7	80763899	80763900	chr7:80763900:T:C	rs3823478	T	C	T	Sox3.mouse_HMG_2	5	1	-	5.673988749108412	-0.7152926852694788	CGTCAATGATATTCAGA
chr7	80874135	80874136	chr7:80874136:A:G	rs58283863	A	G	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr7	80924055	80924056	chr7:80924056:G:T	rs6976815	G	T	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr7	80924086	80924087	chr7:80924087:G:A	rs1457776052	G	A	G	Sox3.mouse_HMG_2	4	1	-	2.4263511124241504	2.4263511124241504	AGTCCATTGCAGTGAAG
chr7	80942147	80942148	chr7:80942148:C:T	rs4731944	C	T	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr7	80968207	80968208	chr7:80968208:T:A	rs76829266	T	A	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr7	80992266	80992267	chr7:80992267:G:A	rs853045	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr7	81052562	81052563	chr7:81052563:G:A	rs1636593	G	A	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	81176176	81176177	chr7:81176177:C:G	rs17154861	C	G	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr7	81183475	81183476	chr7:81183476:A:G	rs17154873	A	G	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr7	82035534	82035535	chr7:82035535:A:G	rs10235670	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr7	82078961	82078962	chr7:82078962:T:A	rs1862123	T	A	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr7	82079001	82079002	chr7:82079002:G:T	rs1011696	G	T	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr7	82094177	82094178	chr7:82094178:A:T	rs2068378	A	T	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr7	82128410	82128411	chr7:82128411:G:A	rs258692	G	A	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr7	82167319	82167320	chr7:82167320:G:A	rs17155962	G	A	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr7	82212364	82212365	chr7:82212365:T:A	rs79660137	T	A	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr7	82535021	82535022	chr7:82535022:G:C	rs553012978	G	C	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr7	82678300	82678301	chr7:82678301:A:G	rs572924971	A	G	A	Sox3.mouse_HMG_2	13	1	-	4.719919677960327	4.719919677960327	GATCAATTTTGTTTATA
chr7	82756415	82756416	chr7:82756416:G:T	rs1859174	G	T	.	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr7	83211896	83211897	chr7:83211897:A:G	rs11773318	A	G	A	Sox3.mouse_HMG_2	13	1	+	4.005461102847341	10.057099607033653	CTGCAATGGCATTAATT
chr7	83268019	83268020	chr7:83268020:G:A	rs17289395	G	A	G	Sox3.mouse_HMG_2	2	1	+	6.6441126993237445	8.5163305902201	TAGCAATGGTAATGATG
chr7	83472600	83472601	chr7:83472601:C:T	rs62476981	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr7	83517343	83517344	chr7:83517344:T:C	rs3801522	T	C	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr7	83517384	83517385	chr7:83517385:C:T	chr7:83517385:C:T	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr7	84002367	84002368	chr7:84002368:A:G	rs10250543	A	G	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr7	84040284	84040285	chr7:84040285:A:G	rs4732536	A	G	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr7	84041064	84041065	chr7:84041065:G:T	rs6965653	G	T	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr7	84091604	84091605	chr7:84091605:C:T	rs74881656	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr7	84091621	84091622	chr7:84091622:A:C	rs12707611	A	C	A	Sox3.mouse_HMG_2	9	1	-	4.987341336549081	-0.9966399233352385	GTTTAATTATATTGTTT
chr7	84107527	84107528	chr7:84107528:C:T	rs3801634	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr7	84148434	84148435	chr7:84148435:T:C	rs6959163	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr7	84207840	84207841	chr7:84207841:C:A	rs13230138	C	A	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr7	84399319	84399320	chr7:84399320:G:A	rs6948391	G	A	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr7	84437406	84437407	chr7:84437407:C:T	rs79903667	C	T	C	Sox3.mouse_HMG_2	11	1	-	4.3853201390592025	-0.18616398927408256	TATCAATTTAAGTAATT
chr7	84530115	84530116	chr7:84530116:A:T	rs17231124	A	T	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr7	84790938	84790939	chr7:84790939:A:G	rs891484	A	G	a	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr7	85285790	85285791	chr7:85285791:A:G	rs17159755	A	G	A	Sox3.mouse_HMG_2	4	1	+	2.7020310402877437	-3.6872503940901433	TCTCAACTCCAGTGAAG
chr7	85336476	85336477	chr7:85336477:A:T	rs2696173	A	T	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr7	85514866	85514867	chr7:85514867:A:T	rs2177409	A	T	A	Sox3.mouse_HMG_2	14	1	-	3.2308618055856577	7.250243329334303	CATTAATGCTATAGTTT
chr7	85529749	85529750	chr7:85529750:G:A	rs73201589	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr7	85529798	85529799	chr7:85529799:C:G	rs10281723	C	G	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr7	85891029	85891030	chr7:85891030:G:C	rs4377889	G	C	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr7	86642977	86642978	chr7:86642978:C:T	rs166677	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr7	86747474	86747475	chr7:86747475:A:C	rs10274631	A	C	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr7	87420322	87420323	chr7:87420323:A:T	rs151231752	A	T	A	Sox3.mouse_HMG_2	16	1	-	2.085487841392197	1.5101917252730006	GCTCAATCTGATTGAAT
chr7	88042019	88042020	chr7:88042020:G:T	rs2024018	G	T	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr7	88269279	88269280	chr7:88269280:T:C	rs17349864	T	C	T	Sox3.mouse_HMG_2	1	1	-	3.3854124924139692	1.3790245503945102	CATCAGTGGCAGTCATG
chr7	88311597	88311598	chr7:88311598:T:C	rs147955192	T	C	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr7	88317661	88317662	chr7:88317662:G:A	rs916849	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr7	88447937	88447938	chr7:88447938:C:T	rs7794117	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr7	88639664	88639665	chr7:88639665:A:G	rs6465147	A	G	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr7	88928868	88928869	chr7:88928869:T:C	rs1528932	T	C	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr7	88965336	88965337	chr7:88965337:A:G	rs139140065	A	G	A	Sox3.mouse_HMG_2	11	1	-	4.589611197355527	-2.0947630021048074	GAGAAATTCCATTGATT
chr7	89145733	89145734	chr7:89145734:T:G	rs1014759	T	G	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr7	89678257	89678258	chr7:89678258:A:G	rs2373957	A	G	A	Sox3.mouse_HMG_2	6	1	-	8.972569591279669	2.583288156901779	GATCAGTGCTATTGAGG
chr7	90006426	90006427	chr7:90006427:T:C	rs10259230	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr7	90760330	90760331	chr7:90760331:G:C	rs2213980	G	C	C	Sox3.mouse_HMG_2	6	1	+	6.1054290900596	6.624222883474767	GGTCAAGTTCATTGAAA
chr7	90776803	90776804	chr7:90776804:G:C	rs17163176	G	C	G	Sox3.mouse_HMG_2	11	1	+	1.9194905315884996	-3.3843614904580117	CATCACTGTCCGTGATC
chr7	90817490	90817491	chr7:90817491:G:T	rs3779560	G	T	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr7	90825701	90825702	chr7:90825702:T:C	rs2188237	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr7	90825710	90825711	chr7:90825711:C:G	rs2188235	C	G	G	Sox3.mouse_HMG_2	3	1	+	8.108678225892472	2.058158916003176	GCTCAATTTTAGGGATT
chr7	90886717	90886718	chr7:90886718:C:G	rs12537076	C	G	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr7	91107476	91107477	chr7:91107477:A:G	rs2073986	A	G	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr7	91311581	91311582	chr7:91311582:C:T	rs55646004	C	T	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr7	91346816	91346817	chr7:91346817:A:T	rs11762520	A	T	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr7	91657600	91657601	chr7:91657601:A:G	rs113556641	A	G	A	Sox3.mouse_HMG_2	0	1	+	2.2137256467336264	3.910217940436291	AGTCAATGGGAGTGTTC
chr7	92719001	92719002	chr7:92719002:T:G	rs73406759	T	G	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr7	92987653	92987654	chr7:92987654:C:T	rs17699960	C	T	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr7	93117647	93117648	chr7:93117648:C:T	rs10233715	C	T	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr7	93923188	93923189	chr7:93923189:A:G	rs7785521	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.7168422751751384	-3.9675319242851965	CTTCATTTCCATTGTTT
chr7	94005363	94005364	chr7:94005364:A:G	rs78773091	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.6468750908777117	-2.742406343500178	AGTCAATGTTAATAATG
chr7	94041216	94041217	chr7:94041217:A:G	rs10487243	A	G	A	Sox3.mouse_HMG_2	10	1	+	8.405985552114041	1.4972307727988168	GATCAATGCCATTAAGA
chr7	94403440	94403441	chr7:94403441:A:G	rs1858822	A	G	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr7	94426620	94426621	chr7:94426621:T:C	rs13240759	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr7	95537891	95537892	chr7:95537892:C:T	rs6465467	C	T	T	Sox3.mouse_HMG_2	8	1	-	7.954071773906335	6.735281389161839	GATTAATGGCAGTGTTT
chr7	95630142	95630143	chr7:95630143:C:T	rs58209481	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr7	95694610	95694611	chr7:95694611:G:A	rs854100	G	A	G	Sox3.mouse_HMG_2	3	1	-	2.864883274360227	-1.9919726008619933	CAGCTATTTCATTGAAG
chr7	95794871	95794872	chr7:95794872:A:G	rs74854159	A	G	A	Sox3.mouse_HMG_2	15	1	-	8.12346438915331	4.343664971647515	TCTCAATTTTATTCATA
chr7	95925603	95925604	chr7:95925604:A:C	rs10280608	A	C	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr7	97001922	97001923	chr7:97001923:A:T	rs2240295	A	T	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr7	97027307	97027308	chr7:97027308:A:G	rs76576182	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.2731193447607136	-4.116162089617173	CCTCAACTTTCTTGATT
chr7	98399824	98399825	chr7:98399825:A:C	rs1045156814	A	C	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr7	98399841	98399842	chr7:98399842:T:C	rs74416888	T	C	T	Sox3.mouse_HMG_2	11	1	+	6.9618658136663445	0.27749161420600893	GGTCAATTTCATTAAAA
chr7	98810134	98810135	chr7:98810135:C:T	rs10245517	C	T	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr7	98942499	98942500	chr7:98942500:T:C	rs2237598	T	C	C	Sox3.mouse_HMG_2	10	1	-	3.8210105085438495	-3.087744270771371	CTACAATTACAGTGTTG
chr7	99003596	99003597	chr7:99003597:A:G	rs563675641	A	G	A	Sox3.mouse_HMG_2	12	1	-	4.478786927686842	-1.5721802102439748	GAACAATGCCGTTGAGG
chr7	99003620	99003621	chr7:99003621:T:C	rs73161950	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr7	99267581	99267582	chr7:99267582:A:G	rs10248906	A	G	A	Sox3.mouse_HMG_2	2	1	-	3.175210958438252	-3.19168634808749	GATCCATGACCTTGATT
chr7	99267589	99267590	chr7:99267590:C:T	rs1030828857	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr7	99453363	99453364	chr7:99453364:G:A	rs45441991	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr7	99573825	99573826	chr7:99573826:C:T	rs952319	C	T	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr7	99849178	99849179	chr7:99849179:A:G	rs679320	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr7	100691786	100691787	chr7:100691787:T:A	rs530244119	T	A	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr7	101032694	101032695	chr7:101032695:G:A	rs56103274	G	A	-	Sox3.mouse_HMG_2	7	1	+	1.1400937651862715	-5.488727729901783	GACCACTGCTAGTGAAG
chr7	101118670	101118671	chr7:101118671:T:C	rs112302062	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr7	101383135	101383136	chr7:101383136:C:G	rs556448804	C	G	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr7	101454054	101454055	chr7:101454055:A:G	rs1476652	A	G	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr7	101454084	101454085	chr7:101454085:T:C	rs1476653	T	C	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr7	101467216	101467217	chr7:101467217:A:G	rs4729717	A	G	G	Sox3.mouse_HMG_2	15	1	-	3.2012513341675044	-0.5785480833382914	GGTCCATGTCTTTGATT
chr7	101593925	101593926	chr7:101593926:G:A	rs12113459	G	A	g	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr7	102071624	102071625	chr7:102071625:C:T	rs10234321	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr7	102111976	102111977	chr7:102111977:A:G	rs980567029	A	G	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr7	102203617	102203618	chr7:102203618:A:G	rs6465852	A	G	G	Sox3.mouse_HMG_2	8	1	-	8.233132618207566	6.978710652051896	GTTCAATGTTATTAAGT
chr7	102390613	102390614	chr7:102390614:T:G	rs111820855	T	G	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr7	102856146	102856147	chr7:102856147:G:T	rs2215040	G	T	T	Sox3.mouse_HMG_2	9	1	+	4.739154048223452	10.723135308107773	TTTCAATTTGATTGTTG
chr7	102934267	102934268	chr7:102934268:A:G	rs3800939	A	G	A	Sox3.mouse_HMG_2	9	1	-	6.051538179194627	5.358885636322667	TCTCAATTTTAGAGATC
chr7	103444640	103444641	chr7:103444641:G:A	rs6465921	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr7	103614475	103614476	chr7:103614476:T:C	rs147883951	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr7	103811525	103811526	chr7:103811526:T:C	rs575704640	T	C	t	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr7	103826686	103826687	chr7:103826687:T:C	rs11977571	T	C	T	Sox3.mouse_HMG_2	15	1	+	13.684498058930602	9.904698641424806	AATCAATTCTAGTGATA
chr7	103831505	103831506	chr7:103831506:A:C	rs39362	A	C	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr7	103895532	103895533	chr7:103895533:A:G	rs3857816	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr7	103930318	103930319	chr7:103930319:C:T	rs6972635	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr7	103947424	103947425	chr7:103947425:T:C	rs10272602	T	C	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr7	104151167	104151168	chr7:104151168:T:C	rs2299408	T	C	T	Sox3.mouse_HMG_2	11	1	+	7.562147633591275	0.8777734341309398	AATAAATGCTATTGAAT
chr7	104176536	104176537	chr7:104176537:C:G	rs367967771	C	G	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr7	104231080	104231081	chr7:104231081:G:T	rs6971455	G	T	G	Sox3.mouse_HMG_2	16	1	-	4.098785522671329	5.1264824562125835	GGACAATTTCCTTGATC
chr7	104958000	104958001	chr7:104958001:T:C	rs6466030	T	C	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr7	105024548	105024549	chr7:105024549:T:G	chr7:105024549:T:G	T	G	T	Sox3.mouse_HMG_2	11	1	+	6.838709449030755	5.458187271616931	TATCAATTATATTAAAA
chr7	105654369	105654370	chr7:105654370:G:A	rs687596	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr7	105879593	105879594	chr7:105879594:T:C	rs212432	T	C	T	Sox3.mouse_HMG_2	9	1	+	3.1018122458207715	2.409159702948812	CCTCAGTTATAGTGAAG
chr7	105996011	105996012	chr7:105996012:G:A	rs2072162	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr7	106157458	106157459	chr7:106157459:T:C	rs176526	T	C	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr7	106204421	106204422	chr7:106204422:C:T	rs113740057	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr7	106380807	106380808	chr7:106380808:G:A	rs179883	G	A	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr7	106420493	106420494	chr7:106420494:T:C	rs73723440	T	C	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr7	106535254	106535255	chr7:106535255:G:A	rs112624495	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr7	106537378	106537379	chr7:106537379:G:A	rs79889326	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr7	106773622	106773623	chr7:106773623:T:G	rs2392929	T	G	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr7	106773675	106773676	chr7:106773676:G:T	rs10246995	G	T	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	107029842	107029843	chr7:107029843:G:A	rs6946733	G	A	G	Sox3.mouse_HMG_2	1	1	+	5.6404897120861115	7.646877654105568	CGTTAATGTTTTTGATT
chr7	107469984	107469985	chr7:107469985:A:G	rs114071904	A	G	A	Sox3.mouse_HMG_2	11	1	-	1.7237368387683167	-4.9606373606920195	GGTCAGTTGTATTGGGC
chr7	107507084	107507085	chr7:107507085:C:A	rs11974387	C	A	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr7	107946025	107946026	chr7:107946026:T:C	rs73412519	T	C	C	Sox3.mouse_HMG_2	10	1	-	3.748492303986399	-3.1602624753288215	GACCAATGGTATAGAGT
chr7	108099908	108099909	chr7:108099909:T:C	rs73197610	T	C	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr7	108099951	108099952	chr7:108099952:C:G	rs73725332	C	G	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr7	108108488	108108489	chr7:108108489:A:G	rs435125	A	G	G	Sox3.mouse_HMG_2	6	1	-	4.036023041400175	-2.353258392977714	GATAAATTTCATGGATA
chr7	108160507	108160508	chr7:108160508:A:G	rs12670313	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.616448860739555	0.22716742636166648	AATCAATGGTGTTGGTG
chr7	108181951	108181952	chr7:108181952:G:A	rs2142325	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr7	108203503	108203504	chr7:108203504:A:G	rs10953560	A	G	A	Sox3.mouse_HMG_2	9	1	-	8.568538257070898	7.875885714198941	ATGCAATGTTATTGATC
chr7	108209277	108209278	chr7:108209278:T:C	rs11984362	T	C	T	Sox3.mouse_HMG_2	10	1	-	4.156052178205439	-2.752702601109783	TCTCATTGCTATTGGTA
chr7	108232371	108232372	chr7:108232372:G:A	rs2072546	G	A	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr7	108497221	108497222	chr7:108497222:T:C	rs10250374	T	C	T	Sox3.mouse_HMG_2	10	1	-	4.996004047654166	-1.9127507316610552	GTTTAATTACATTGGTT
chr7	109231875	109231876	chr7:109231876:T:C	rs148784959	T	C	T	Sox3.mouse_HMG_2	1	1	-	4.4671947177777875	2.4608067757583294	GATCAATGTGATTCAAA
chr7	109882581	109882582	chr7:109882582:T:C	rs1270808780	T	C	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr7	110076721	110076722	chr7:110076722:G:A	rs140432302	G	A	G	Sox3.mouse_HMG_2	0	1	+	4.389363741688424	2.6928714479857616	GGTCACTGTCAGTGAGC
chr7	110337771	110337772	chr7:110337772:A:G	rs10257748	A	G	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr7	110507687	110507688	chr7:110507688:A:C	rs10255144	A	C	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr7	110539732	110539733	chr7:110539733:A:G	rs55735006	A	G	A	Sox3.mouse_HMG_2	11	1	-	10.204987463619855	3.520613264159519	ACACAATTTCATTGATT
chr7	110609456	110609457	chr7:110609457:T:C	rs1734227	T	C	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr7	111006434	111006435	chr7:111006435:G:T	rs56277540	G	T	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr7	111029170	111029171	chr7:111029171:T:C	rs80147165	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.383908780727114	-4.005372653650775	GATCAATGTCCATGACT
chr7	111054222	111054223	chr7:111054223:T:G	rs184198986	T	G	T	Sox3.mouse_HMG_2	14	1	-	2.265372709860085	-3.7671559077285592	TCTCAGTGGCATAGATT
chr7	111093104	111093105	chr7:111093105:T:C	rs980362701	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr7	111165022	111165023	chr7:111165023:T:G	rs189727432	T	G	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr7	111486857	111486858	chr7:111486858:A:T	rs2396358	A	T	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr7	111711455	111711456	chr7:111711456:T:C	rs10487331	T	C	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr7	111979783	111979784	chr7:111979784:T:A	rs6971292	T	A	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr7	112132459	112132460	chr7:112132460:T:C	rs78135136	T	C	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr7	112261394	112261395	chr7:112261395:A:G	rs73195224	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.1212496625673785	-3.2680317718105107	CATCCATTGCATTTATG
chr7	112291317	112291318	chr7:112291318:G:T	rs56675883	G	T	G	Sox3.mouse_HMG_2	16	1	+	4.228112901629449	4.591834591263394	TACCAATTACAGTGAGG
chr7	112356896	112356897	chr7:112356897:T:C	rs12113634	T	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr7	112422627	112422628	chr7:112422628:G:A	rs7780160	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr7	112709746	112709747	chr7:112709747:C:T	rs10261844	C	T	c	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr7	113375276	113375277	chr7:113375277:T:G	rs13230022	T	G	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr7	114152467	114152468	chr7:114152468:T:C	rs2244419	T	C	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr7	114232113	114232114	chr7:114232114:A:G	rs1668330	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.1261329379791567	-3.558241261481178	GATTAGTGATATTGAGA
chr7	114484604	114484605	chr7:114484605:C:G	rs6974757	C	G	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr7	114519186	114519187	chr7:114519187:G:A	rs17372842	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr7	114660661	114660662	chr7:114660662:T:C	rs12154391	T	C	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr7	114790882	114790883	chr7:114790883:G:A	rs140055644	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr7	114882142	114882143	chr7:114882143:T:G	rs4730652	T	G	G	Sox3.mouse_HMG_2	7	1	-	0.9250410185522505	0.9250410185522505	GAGCAATACCAGTGGTG
chr7	115260629	115260630	chr7:115260630:G:A	rs2188538	G	A	A	Sox3.mouse_HMG_2	11	1	+	1.9117464306622247	-2.65973769767106	CATCCATGTTGGTGAAT
chr7	115420167	115420168	chr7:115420168:G:T	rs7811355	G	T	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr7	115472052	115472053	chr7:115472053:A:G	rs1012233010	A	G	A	Sox3.mouse_HMG_2	1	1	+	4.766517689952714	2.7601297479332563	TATCAGTTCCAGTGGTT
chr7	115779829	115779830	chr7:115779830:T:C	rs76935609	T	C	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr7	115933814	115933815	chr7:115933815:A:C	rs117558466	A	C	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr7	116021272	116021273	chr7:116021273:C:T	rs80170509	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr7	116119829	116119830	chr7:116119830:T:G	rs2402032	T	G	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr7	116404511	116404512	chr7:116404512:A:G	rs1918923	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr7	116547635	116547636	chr7:116547636:A:C	rs12668226	A	C	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr7	116584780	116584781	chr7:116584781:A:G	rs6466590	A	G	A	Sox3.mouse_HMG_2	11	1	+	6.992867470462879	11.564351598796165	AATCAATGTCAATGTTG
chr7	116765332	116765333	chr7:116765333:T:C	rs2237717	T	C	C	Sox3.mouse_HMG_2	2	1	-	7.345124376239455	5.4729064853431	GAACACTTTCATTGATG
chr7	116782159	116782160	chr7:116782160:C:T	rs6966012	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr7	117348388	117348389	chr7:117348389:C:G	rs916726	C	G	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr7	117492864	117492865	chr7:117492865:A:G	rs11772396	A	G	a	Sox3.mouse_HMG_2	11	1	-	4.278104045206715	-2.4062701542536207	CCTCAAATGCATTGAAA
chr7	117688398	117688399	chr7:117688399:G:A	rs187757433	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr7	117716118	117716119	chr7:117716119:A:T	rs148638862	A	T	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr7	118121616	118121617	chr7:118121617:G:A	rs2402303	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr7	118452310	118452311	chr7:118452311:A:C	rs7808314	A	C	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr7	118660335	118660336	chr7:118660336:C:T	rs925351	C	T	C	Sox3.mouse_HMG_2	0	1	+	4.420273395121586	3.9351383808674782	CGTCCATTTCAGTGAAA
chr7	118859208	118859209	chr7:118859209:A:G	rs13228009	A	G	A	Sox3.mouse_HMG_2	10	1	+	6.597314292782634	-0.3114404865325871	TCTCAATTACAGTGTTG
chr7	120282609	120282610	chr7:120282610:A:G	rs184164946	A	G	A	Sox3.mouse_HMG_2	6	1	-	5.82548817265975	-0.56379326171814	TTTCAATGTTATTTTTT
chr7	120709362	120709363	chr7:120709363:G:A	rs7458164	G	A	A	Sox3.mouse_HMG_2	3	1	-	2.452855429859722	-2.404000445362497	GTGCAATTTTGGTGATT
chr7	120869006	120869007	chr7:120869007:T:C	rs73427873	T	C	T	Sox3.mouse_HMG_2	11	1	+	3.512434168671292	-3.1719400307890426	GATCAATCTTCTTGAAG
chr7	120950099	120950100	chr7:120950100:A:G	rs557968619	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr7	120990214	120990215	chr7:120990215:T:G	rs2721361	T	G	G	Sox3.mouse_HMG_2	16	1	-	2.2318374777027445	1.2041405441614899	TATCAAAGTTTTTGAAA
chr7	120990245	120990246	chr7:120990246:C:G	rs12673175	C	G	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr7	121213552	121213553	chr7:121213553:G:A	rs7786203	G	A	A	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr7	121245268	121245269	chr7:121245269:C:T	rs7795660	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr7	121514630	121514631	chr7:121514631:G:T	rs56070691	G	T	A	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr7	121594284	121594285	chr7:121594285:G:T	rs57135280	G	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr7	121716888	121716889	chr7:121716889:A:G	rs6466804	A	G	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr7	122679471	122679472	chr7:122679472:G:A	rs77466975	G	A	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr7	123845899	123845900	chr7:123845900:T:C	rs2109353	T	C	C	Sox3.mouse_HMG_2	6	1	+	2.367719435138036	-4.021561999239854	GCTGAGTGGTAGTGATT
chr7	124208386	124208387	chr7:124208387:C:A	rs6974549	C	A	C	Sox3.mouse_HMG_2	3	1	+	7.507631913401963	0.6069616741430565	CAGCAATGTTATTCATG
chr7	124387169	124387170	chr7:124387170:C:T	rs77172457	C	T	C	Sox3.mouse_HMG_2	0	1	-	2.6238645335736916	0.9273722398710282	GGTCAATGACAGGGTTA
chr7	124911870	124911871	chr7:124911871:T:C	rs7794631	T	C	C	Sox3.mouse_HMG_2	11	1	+	5.4941563609170485	-1.1902178385432862	TCTCAAGGGCATTGAAT
chr7	125396681	125396682	chr7:125396682:T:G	rs10256418	T	G	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr7	125922136	125922137	chr7:125922137:T:C	rs9886176	T	C	t	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr7	126103951	126103952	chr7:126103952:G:C	rs71576263	G	C	G	Sox3.mouse_HMG_2	7	1	+	5.054937862212851	-1.5738836328752068	GAACATTGTCATTGACT
chr7	126436618	126436619	chr7:126436619:C:T	rs1419460	C	T	C	Sox3.mouse_HMG_2	10	1	-	1.532660841405017	8.441415620720239	GGACAATGGCGGTGAGG
chr7	126446834	126446835	chr7:126446835:T:A	rs10252001	T	A	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr7	126450454	126450455	chr7:126450455:C:T	rs13247338	C	T	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr7	126569591	126569592	chr7:126569592:A:T	rs2299467	A	T	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr7	126701340	126701341	chr7:126701341:G:A	rs17150116	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr7	127245664	127245665	chr7:127245665:A:G	rs17862333	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr7	127779182	127779183	chr7:127779183:A:G	rs6968199	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.806325412691228	-1.5829560216866623	CGTGAATGGTAGTGACA
chr7	127871651	127871652	chr7:127871652:T:C	rs2896395	T	C	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr7	127940835	127940836	chr7:127940836:C:T	rs150479109	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr7	128066628	128066629	chr7:128066629:G:T	rs3757755	G	T	G	Sox3.mouse_HMG_2	13	1	+	6.843638089577423	0.4563780506502105	TATTAATTGCATTGTTA
chr7	128066633	128066634	chr7:128066634:T:C	rs3757754	T	C	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr7	128099668	128099669	chr7:128099669:G:T	rs6954161	G	T	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr7	128109085	128109086	chr7:128109086:A:T	rs74930402	A	T	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr7	128353606	128353607	chr7:128353607:C:G	rs7810319	C	G	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr7	128456424	128456425	chr7:128456425:G:A	chr7:128456425:G:A	G	A	g	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr7	128459126	128459127	chr7:128459127:A:G	rs2562729	A	G	a	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr7	128524118	128524119	chr7:128524119:C:T	rs142590003	C	T	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr7	128634183	128634184	chr7:128634184:G:A	rs9768325	G	A	.	Sox3.mouse_HMG_2	11	1	+	2.4811483770544953	-2.090335751278789	GAGCAAAGTCAGTGAGG
chr7	128863017	128863018	chr7:128863018:G:T	rs112994393	G	T	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr7	128878636	128878637	chr7:128878637:T:A	rs191095949	T	A	T	Sox3.mouse_HMG_2	11	1	+	1.0345980975545346	-4.917408208192573	GGGCAAAGCCATTGAAG
chr7	129440778	129440779	chr7:129440779:A:G	rs17552854	A	G	A	Sox3.mouse_HMG_2	1	1	+	3.1619772591309405	1.155589317111484	TATGAATGCCAGTTATT
chr7	129456692	129456693	chr7:129456693:A:G	rs753336	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	129559486	129559487	chr7:129559487:G:A	rs10245560	G	A	G	Sox3.mouse_HMG_2	8	1	-	6.311585139744918	7.566007105900586	GTTTAATGCCATTGAAC
chr7	129865225	129865226	chr7:129865226:T:G	rs527712450	T	G	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr7	129907504	129907505	chr7:129907505:G:A	rs79528549	G	A	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr7	129970098	129970099	chr7:129970099:G:A	rs1480483207	G	A	g	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr7	130207397	130207398	chr7:130207398:A:G	rs1994468	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.999470877783414	-1.3898105565944743	TACCAATTGTATTGGAT
chr7	130334359	130334360	chr7:130334360:C:T	rs7798773	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr7	130898801	130898802	chr7:130898802:C:T	rs117291308	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr7	130904639	130904640	chr7:130904640:C:T	rs147046488	C	T	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr7	130904640	130904641	chr7:130904641:G:A	rs2278747	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr7	131039412	131039413	chr7:131039413:G:A	rs6969365	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr7	131235788	131235789	chr7:131235789:G:A	rs116057203	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr7	131242697	131242698	chr7:131242698:G:A	rs1965692	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr7	132081123	132081124	chr7:132081124:C:T	rs10249435	C	T	c	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr7	132099499	132099500	chr7:132099500:A:G	rs281883	A	G	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr7	132182073	132182074	chr7:132182074:A:G	rs3734984	A	G	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr7	132393919	132393920	chr7:132393920:G:T	rs116954928	G	T	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr7	132508796	132508797	chr7:132508797:A:T	rs156963	A	T	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr7	132591090	132591091	chr7:132591091:A:C	rs7806862	A	C	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr7	132682627	132682628	chr7:132682628:T:C	rs924371	T	C	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr7	132741707	132741708	chr7:132741708:C:T	rs72607785	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr7	132878703	132878704	chr7:132878704:C:T	rs114971135	C	T	C	Sox3.mouse_HMG_2	11	1	-	2.0639910248400346	-2.5074931034932506	CATAAATGCCAGTGTGG
chr7	133057072	133057073	chr7:133057073:G:C	rs57675453	G	C	G	Sox3.mouse_HMG_2	5	1	-	1.701799303650495	2.2205930970656618	CTTTACTGGCAGTGATG
chr7	133753378	133753379	chr7:133753379:A:G	rs35531336	A	G	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr7	133853184	133853185	chr7:133853185:G:C	rs79238907	G	C	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr7	133946248	133946249	chr7:133946249:C:T	rs62470446	C	T	c	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr7	133977649	133977650	chr7:133977650:C:G	rs2953621	C	G	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	134104434	134104435	chr7:134104435:C:T	rs11982121	C	T	-	Sox3.mouse_HMG_2	9	1	+	3.261481930365629	3.9541344732375885	AATCTATTTCATTGCTT
chr7	134372085	134372086	chr7:134372086:C:T	rs13244962	C	T	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr7	134601462	134601463	chr7:134601463:C:G	rs7796491	C	G	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr7	134759368	134759369	chr7:134759369:T:C	rs1026275	T	C	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr7	134828596	134828597	chr7:134828597:G:A	rs13233583	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr7	134828643	134828644	chr7:134828644:G:A	rs11980803	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr7	135002185	135002186	chr7:135002186:G:A	rs28622936	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr7	135224331	135224332	chr7:135224332:G:T	rs292622	G	T	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr7	135707048	135707049	chr7:135707049:T:C	rs534421801	T	C	T	Sox3.mouse_HMG_2	6	1	-	2.8867736523551724	2.8867736523551724	GTGCAAAGTCAGTGATT
chr7	135720092	135720093	chr7:135720093:C:T	rs3112362	C	T	c	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	135721581	135721582	chr7:135721582:G:A	rs111545354	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr7	135762602	135762603	chr7:135762603:G:A	rs59538271	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr7	135978128	135978129	chr7:135978129:T:C	rs116077446	T	C	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr7	136117641	136117642	chr7:136117642:C:G	rs36070085	C	G	C	Sox3.mouse_HMG_2	3	1	+	7.852041114639129	1.8015218047498314	TCTCAATTCCAGTGAAC
chr7	136117668	136117669	chr7:136117669:C:T	rs35239688	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr7	136533973	136533974	chr7:136533974:G:A	rs115951625	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr7	137813753	137813754	chr7:137813754:A:G	rs60644777	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr7	138096690	138096691	chr7:138096691:C:A	rs73155744	C	A	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr7	138127177	138127178	chr7:138127178:G:C	rs78852479	G	C	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr7	138244935	138244936	chr7:138244936:A:T	rs2431047	A	T	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr7	138754102	138754103	chr7:138754103:T:C	rs411467	T	C	C	Sox3.mouse_HMG_2	12	1	+	1.8833043902727502	-4.167662747658066	CTTCAATGGCTTTGGGG
chr7	138937816	138937817	chr7:138937817:C:A	rs2718135	C	A	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr7	138937825	138937826	chr7:138937826:T:C	rs2718136	T	C	C	Sox3.mouse_HMG_2	6	1	+	1.8799189445286464	-4.509362489849243	GGCCAATGATAGAGATT
chr7	138945586	138945587	chr7:138945587:C:T	rs2774963	C	T	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr7	139079313	139079314	chr7:139079314:G:A	rs2236424	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr7	139092060	139092061	chr7:139092061:C:T	rs10248093	C	T	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr7	139431286	139431287	chr7:139431287:T:C	rs79531747	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr7	139647814	139647815	chr7:139647815:T:C	rs73156868	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr7	139736751	139736752	chr7:139736752:G:T	rs11770283	G	T	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr7	139981723	139981724	chr7:139981724:T:C	rs2299899	T	C	T	Sox3.mouse_HMG_2	4	1	-	3.3781980345001816	-3.011083399877709	GAACAATCCCAGTGAGG
chr7	140376303	140376304	chr7:140376304:T:A	rs4368896	T	A	A	Sox3.mouse_HMG_2	4	1	-	9.968569519619468	3.060494291826409	GAGCAATGTTATTGTTA
chr7	140524223	140524224	chr7:140524224:A:G	rs6948786	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr7	140558396	140558397	chr7:140558397:A:G	rs538368550	A	G	A	Sox3.mouse_HMG_2	3	1	+	3.727973370061167	4.578124299430777	AGTAAATGTCAGTGAGA
chr7	140704037	140704038	chr7:140704038:A:C	rs113007847	A	C	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr7	140763507	140763508	chr7:140763508:C:G	rs111947383	C	G	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr7	140819167	140819168	chr7:140819168:C:T	rs2706775	C	T	-	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr7	141221862	141221863	chr7:141221863:G:C	rs10253802	G	C	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr7	141228141	141228142	chr7:141228142:T:C	rs6951501	T	C	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr7	141317842	141317843	chr7:141317843:G:T	rs2366081	G	T	T	Sox3.mouse_HMG_2	8	1	+	6.999906142246339	7.813544075250552	TCTCAATTGTTTTGATG
chr7	141911698	141911699	chr7:141911699:G:C	rs7789123	G	C	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr7	142136068	142136069	chr7:142136069:A:G	rs6944985	A	G	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr7	142483027	142483028	chr7:142483028:G:A	rs376682174	G	A	.	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr7	142754430	142754431	chr7:142754431:G:T	rs201188438	G	T	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr7	142760626	142760627	chr7:142760627:A:C	rs369005346	A	C	a	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr7	142775921	142775922	chr7:142775922:C:T	rs111224809	C	T	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	142782971	142782972	chr7:142782972:T:C	chr7:142782972:T:C	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr7	142793522	142793523	chr7:142793523:G:A	rs73452817	G	A	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr7	142941609	142941610	chr7:142941610:T:C	rs6949788	T	C	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr7	142965404	142965405	chr7:142965405:C:T	rs7793035	C	T	T	Sox3.mouse_HMG_2	3	1	+	4.327906578488269	-0.5289492967339511	ACTCGATTGCAGTGATA
chr7	143043654	143043655	chr7:143043655:T:C	rs10265709	T	C	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr7	143222948	143222949	chr7:143222949:G:A	rs149217752	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr7	143349088	143349089	chr7:143349089:C:T	rs17164250	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr7	143737262	143737263	chr7:143737263:G:A	rs57749006	G	A	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr7	143737263	143737264	chr7:143737264:T:C	rs144919945	T	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr7	143935739	143935740	chr7:143935740:A:G	rs13229174	A	G	.	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr7	143936063	143936064	chr7:143936064:T:C	rs13235235	T	C	.	Sox3.mouse_HMG_2	12	1	-	5.421327521705748	5.085705986964848	TAACAATGGCATAGAAG
chr7	144406821	144406822	chr7:144406822:G:T	rs1208173	G	T	T	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr7	144520000	144520001	chr7:144520001:C:T	rs10248004	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr7	144665768	144665769	chr7:144665769:A:C	rs6942497	A	C	C	Sox3.mouse_HMG_2	5	1	+	11.28534010120204	4.377264873408983	GCTCAATGATAGTGAAT
chr7	144762964	144762965	chr7:144762965:C:T	rs56023249	C	T	t	Sox3.mouse_HMG_2	1	1	-	4.815152127738968	6.8215400697584245	TGACAATGTCAGTTATG
chr7	144924204	144924205	chr7:144924205:C:G	rs2699464	C	G	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr7	145005547	145005548	chr7:145005548:A:C	rs6960872	A	C	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr7	145355125	145355126	chr7:145355126:T:C	rs41684	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr7	145488976	145488977	chr7:145488977:G:A	rs1609234	G	A	A	Sox3.mouse_HMG_2	0	1	+	2.262997893697753	0.5665055999950898	GAAATATGTTATTGATG
chr7	145489012	145489013	chr7:145489013:G:A	rs140510026	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	145664933	145664934	chr7:145664934:A:T	rs2191275	A	T	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr7	145700775	145700776	chr7:145700776:T:G	rs850543	T	G	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr7	145845981	145845982	chr7:145845982:T:C	rs6975640	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr7	145999915	145999916	chr7:145999916:A:C	rs1356432	A	C	A	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr7	146805344	146805345	chr7:146805345:G:C	chr7:146805345:G:C	G	C	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr7	146874997	146874998	chr7:146874998:T:G	rs75708793	T	G	T	Sox3.mouse_HMG_2	11	1	+	2.499116409701055	1.118594232287232	CATCAACGTCATTAACT
chr7	146949257	146949258	chr7:146949258:T:C	rs33954628	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.8305117312810415	-2.5587697030968477	TGACAATTTCATTTATC
chr7	146954367	146954368	chr7:146954368:A:C	rs13221567	A	C	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr7	147012651	147012652	chr7:147012652:G:A	rs79121317	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr7	147067222	147067223	chr7:147067223:G:A	rs6962511	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr7	147340035	147340036	chr7:147340036:T:C	rs899619	T	C	C	Sox3.mouse_HMG_2	5	1	-	5.026138492154982	-1.3631429422229069	GTCCAATGCCATTGGTG
chr7	147465667	147465668	chr7:147465668:C:G	rs4726867	C	G	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr7	147478820	147478821	chr7:147478821:A:T	rs4726871	A	T	A	Sox3.mouse_HMG_2	10	1	+	3.5236801556753474	-3.385074623639873	CATAAATTCTATTGCTA
chr7	147639254	147639255	chr7:147639255:G:C	rs372580822	G	C	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr7	147884711	147884712	chr7:147884712:A:C	rs2708244	A	C	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr7	147884744	147884745	chr7:147884745:C:T	rs2538983	C	T	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr7	147941589	147941590	chr7:147941590:C:T	rs73743657	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr7	148084648	148084649	chr7:148084649:C:A	rs12670215	C	A	C	Sox3.mouse_HMG_2	1	1	+	4.153656763565267	6.869098299909206	GCTTAATTGTATTAATT
chr7	148327441	148327442	chr7:148327442:A:G	rs73154519	A	G	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr7	148353053	148353054	chr7:148353054:A:G	rs1730433	A	G	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr7	148428282	148428283	chr7:148428283:A:G	rs574048324	A	G	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr7	148482796	148482797	chr7:148482797:G:A	rs62506980	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr7	148624781	148624782	chr7:148624782:G:A	rs530686524	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr7	149021936	149021937	chr7:149021937:G:A	rs114498772	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr7	149021945	149021946	chr7:149021946:T:A	rs6958855	T	A	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr7	149206504	149206505	chr7:149206505:G:A	rs13221837	G	A	G	Sox3.mouse_HMG_2	5	1	+	3.236445836894183	9.625727271272073	CATCCGTGTTATTGAAA
chr7	149284988	149284989	chr7:149284989:C:A	rs112616806	C	A	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr7	149321663	149321664	chr7:149321664:G:A	rs2003500	G	A	A	Sox3.mouse_HMG_2	9	1	-	0.9372434995038015	1.6298960423757611	CAGCACTGTCAGTGAGC
chr7	149450191	149450192	chr7:149450192:A:G	rs4727070	A	G	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr7	149450368	149450369	chr7:149450369:T:G	rs10952813	T	G	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr7	149494845	149494846	chr7:149494846:T:G	chr7:149494846:T:G	T	G	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr7	149600012	149600013	chr7:149600013:A:G	rs354042	A	G	-	Sox3.mouse_HMG_2	5	1	-	1.4502930086326524	1.4502930086326524	GAGCATTGGCAGTGGTT
chr7	149647929	149647930	chr7:149647930:G:T	rs9791856	G	T	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr7	149704552	149704553	chr7:149704553:G:C	rs10952835	G	C	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	149886080	149886081	chr7:149886081:C:T	rs10807976	C	T	.	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr7	149933914	149933915	chr7:149933915:G:T	rs7791831	G	T	.	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr7	150503926	150503927	chr7:150503927:G:T	rs79885761	G	T	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr7	150561334	150561335	chr7:150561335:A:C	rs1879865	A	C	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr7	150566672	150566673	chr7:150566673:G:A	rs2177188	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	150587594	150587595	chr7:150587595:C:T	rs11486916	C	T	T	Sox3.mouse_HMG_2	7	1	-	4.858352946392777	-1.7704685486952818	TATTAATGTTTTTGAAT
chr7	150678312	150678313	chr7:150678313:G:T	rs56138121	G	T	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr7	150715202	150715203	chr7:150715203:C:G	rs1558479	C	G	C	Sox3.mouse_HMG_2	15	1	-	6.459345938897571	5.416673666111801	AATCAATGTCAGTTAGG
chr7	150715228	150715229	chr7:150715229:C:T	rs10488372	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr7	150780820	150780821	chr7:150780821:G:A	rs6464100	G	A	A	Sox3.mouse_HMG_2	16	1	+	3.813908270835846	3.6023338443505954	GTTCAAGTTCAGTGAGG
chr7	150791527	150791528	chr7:150791528:A:G	rs2302479	A	G	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr7	150824007	150824008	chr7:150824008:A:G	rs7787744	A	G	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr7	151155060	151155061	chr7:151155061:C:T	rs74473708	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr7	151214933	151214934	chr7:151214934:T:C	rs55866446	T	C	T	Sox3.mouse_HMG_2	11	1	+	2.103775816912051	-4.580598382548284	CCTCAAACTCATTGATG
chr7	151247436	151247437	chr7:151247437:A:T	rs538096283	A	T	A	Sox3.mouse_HMG_2	5	1	+	1.729796591363481	-5.178278636429576	TATCAAGGCCAGGGATA
chr7	151331094	151331095	chr7:151331095:C:T	rs11981586	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr7	151690862	151690863	chr7:151690863:G:A	rs1358403293	G	A	-	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr7	151690877	151690878	chr7:151690878:C:T	rs2024266	C	T	-	Sox3.mouse_HMG_2	0	1	+	5.731641258724235	5.246506244470127	CGTGAATGGCAGTGAGT
chr7	151709689	151709690	chr7:151709690:A:G	rs533723387	A	G	-	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr7	151709701	151709702	chr7:151709702:G:A	rs56012466	G	A	-	Sox3.mouse_HMG_2	9	1	-	3.863831557837931	4.556484100709891	TGTCAGTGTCAGTGTTA
chr7	151776424	151776425	chr7:151776425:T:C	rs7792110	T	C	C	Sox3.mouse_HMG_2	5	1	-	5.222495041511738	-1.166786392866152	CTTCAATGTCCTTGGTA
chr7	151813563	151813564	chr7:151813564:T:C	rs7800856	T	C	c	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr7	151821491	151821492	chr7:151821492:G:A	rs59048436	G	A	G	Sox3.mouse_HMG_2	8	1	-	2.8214088642036295	4.075830830359299	CAGCAGTGCCATTGAGG
chr7	151844836	151844837	chr7:151844837:A:G	rs77913872	A	G	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr7	151896050	151896051	chr7:151896051:T:C	rs10952326	T	C	T	Sox3.mouse_HMG_2	8	1	-	3.088731215119476	4.307521599863972	TAGCAAGGATAGTGATG
chr7	151901209	151901210	chr7:151901210:C:T	rs75793218	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr7	151916352	151916353	chr7:151916353:G:A	rs11973357	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr7	151931774	151931775	chr7:151931775:C:T	rs6948413	C	T	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr7	152071108	152071109	chr7:152071109:G:A	rs112043662	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr7	152189840	152189841	chr7:152189841:A:G	rs61179006	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr7	152382514	152382515	chr7:152382515:C:T	rs6970394	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr7	152402500	152402501	chr7:152402501:A:C	rs71220428	A	C	A	Sox3.mouse_HMG_2	15	1	-	3.7684796643129888	1.0313525195929634	CATGAATTGTATAGATC
chr7	152581302	152581303	chr7:152581303:A:G	chr7:152581303:A:G	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr7	152617285	152617286	chr7:152617286:G:C	rs115955653	G	C	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr7	153070375	153070376	chr7:153070376:A:G	rs6958881	A	G	A	Sox3.mouse_HMG_2	1	1	+	9.622941401192291	7.61655345917283	AATCAAGTTTATTGATG
chr7	153382893	153382894	chr7:153382894:A:G	rs115186412	A	G	A	Sox3.mouse_HMG_2	14	1	-	4.629418187070187	2.616271093230188	CATAAATTTTATTGTGT
chr7	153920409	153920410	chr7:153920410:T:C	rs141991327	T	C	T	Sox3.mouse_HMG_2	1	1	-	4.5321670179681375	2.5257790759486793	GATCAGTTCTATTAATG
chr7	154480359	154480360	chr7:154480360:C:A	rs73163051	C	A	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr7	154505401	154505402	chr7:154505402:G:A	rs10952489	G	A	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr7	154778139	154778140	chr7:154778140:G:A	rs34259212	G	A	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr7	154791793	154791794	chr7:154791794:T:C	rs73500233	T	C	T	Sox3.mouse_HMG_2	11	1	+	1.4859916894715528	-5.1983825099887815	TGTCACTGCTGTTGATG
chr7	154832199	154832200	chr7:154832200:A:G	rs1464913	A	G	G	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr7	154832222	154832223	chr7:154832223:G:T	rs76880781	G	T	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr7	154953350	154953351	chr7:154953351:A:C	rs6960009	A	C	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr7	155081991	155081992	chr7:155081992:A:C	rs7796458	A	C	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr7	155211036	155211037	chr7:155211037:T:C	rs11766971	T	C	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr7	155211044	155211045	chr7:155211045:C:T	rs75003816	C	T	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr7	155230490	155230491	chr7:155230491:A:G	rs6964381	A	G	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr7	155287023	155287024	chr7:155287024:G:A	rs9801301	G	A	A	Sox3.mouse_HMG_2	1	1	+	5.629786911193798	7.636174853213254	TGTCCATGTTATTGTTG
chr7	155390092	155390093	chr7:155390093:C:G	rs9647682	C	G	C	Sox3.mouse_HMG_2	3	1	+	5.740418884747721	-0.31010042514157776	CATCAATGTTGGTGACC
chr7	155390105	155390106	chr7:155390106:C:T	rs12534900	C	T	T	Sox3.mouse_HMG_2	16	1	+	5.740418884747721	7.343411934408172	CATCAATGTTGGTGACC
chr7	155476532	155476533	chr7:155476533:G:A	rs73163355	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr7	155784580	155784581	chr7:155784581:C:T	rs2158813	C	T	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr7	155839455	155839456	chr7:155839456:G:C	rs1151794	G	C	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr7	155861958	155861959	chr7:155861959:G:T	rs112243181	G	T	G	Sox3.mouse_HMG_2	9	1	-	1.8952160153477402	-3.3961127016646193	GATCATTGTCTTTGAGA
chr7	155887899	155887900	chr7:155887900:G:A	rs73169181	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr7	155900786	155900787	chr7:155900787:C:A	rs1824552	C	A	C	Sox3.mouse_HMG_2	3	1	+	2.4276917920109233	-4.472978447247982	TGACAATGGCATTTGTT
chr7	155959877	155959878	chr7:155959878:C:T	rs58305374	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr7	155959912	155959913	chr7:155959913:C:T	rs114238205	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr7	156000092	156000093	chr7:156000093:C:T	rs62480441	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr7	156000111	156000112	chr7:156000112:C:T	rs115730087	C	T	C	Sox3.mouse_HMG_2	7	1	+	4.880146841929293	10.383077123172107	CCTCAATCGCATTGGTG
chr7	156206773	156206774	chr7:156206774:T:C	rs542621808	T	C	T	Sox3.mouse_HMG_2	9	1	+	6.319471774886295	5.626819232014333	GATCAATGGTATTTGAA
chr7	156223531	156223532	chr7:156223532:T:C	rs1922086	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr7	156237322	156237323	chr7:156237323:C:T	rs73739624	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr7	156356807	156356808	chr7:156356808:C:G	rs7798044	C	G	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr7	156365151	156365152	chr7:156365152:G:T	rs57884462	G	T	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr7	156368169	156368170	chr7:156368170:C:T	rs34977094	C	T	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr7	156368188	156368189	chr7:156368189:T:C	rs34810003	T	C	T	Sox3.mouse_HMG_2	8	1	-	6.5355964338098165	7.7543868185543126	TGGCAATTACAGTGATT
chr7	156368202	156368203	chr7:156368203:T:G	rs34245976	T	G	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr7	156527543	156527544	chr7:156527544:G:C	rs1527577	G	C	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr7	156924478	156924479	chr7:156924479:G:A	rs10949614	G	A	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr7	156953467	156953468	chr7:156953468:G:A	rs56265074	G	A	A	Sox3.mouse_HMG_2	12	1	-	2.4664527935733576	8.517419931504175	TCTCAATTGCAGCGGTG
chr7	157151765	157151766	chr7:157151766:A:G	rs3808317	A	G	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr7	157267133	157267134	chr7:157267134:C:A	rs4262225	C	A	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr7	157344699	157344700	chr7:157344700:C:G	rs73497154	C	G	c	Sox3.mouse_HMG_2	1	1	-	3.677592751658473	2.968539157333991	AGTCGATGCTAGTGAGA
chr7	157403351	157403352	chr7:157403352:A:G	rs945120849	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr7	157403360	157403361	chr7:157403361:C:T	rs140733337	C	T	C	Sox3.mouse_HMG_2	14	1	-	2.4694669525130344	5.787533222284636	TGGCAATGTCAGTGGAC
chr7	157484727	157484728	chr7:157484728:G:T	rs77676146	G	T	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr7	157493774	157493775	chr7:157493775:A:G	rs73744951	A	G	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr7	157569007	157569008	chr7:157569008:C:T	rs144237368	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr7	157569041	157569042	chr7:157569042:T:C	rs221294	T	C	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr7	157759674	157759675	chr7:157759675:G:C	rs1638756	G	C	C	Sox3.mouse_HMG_2	13	1	+	5.087762827678264	-1.2994972112489471	GGTCAATGATGTTGGTG
chr7	157873968	157873969	chr7:157873969:G:C	rs58673285	G	C	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr7	157932891	157932892	chr7:157932892:G:A	rs34145697	G	A	-	Sox3.mouse_HMG_2	7	1	-	2.1140024869790324	7.616932768221844	TGTCAATCGGAGTGATT
chr7	157932893	157932894	chr7:157932894:T:C	rs73745036	T	C	-	Sox3.mouse_HMG_2	5	1	-	2.1140024869790324	-4.275278947398856	TGTCAATCGGAGTGATT
chr7	158320697	158320698	chr7:158320698:T:G	rs896779	T	G	T	Sox3.mouse_HMG_2	12	1	+	6.108150126523104	-0.27843854614861185	CAACAATGATATTCATC
chr7	158350493	158350494	chr7:158350494:T:C	rs4909195	T	C	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr7	158595967	158595968	chr7:158595968:A:C	rs1921303	A	C	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr7	158614901	158614902	chr7:158614902:T:C	rs573799930	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.6581437964488894	-3.7311376379289993	CATCAATGTGATTCTTG
chr7	158684317	158684318	chr7:158684318:T:C	rs7794321	T	C	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr7	158684333	158684334	chr7:158684334:T:A	rs4909260	T	A	T	Sox3.mouse_HMG_2	11	1	+	2.9968104320367126	-2.9551958737103963	TGCCAATGGCATAGATT
chr7	158705498	158705499	chr7:158705499:G:T	rs77953019	G	T	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr7	158719830	158719831	chr7:158719831:A:G	rs12698276	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr7	158823660	158823661	chr7:158823661:A:G	rs1320879475	A	G	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	339568	339569	chr8:339569:T:G	rs78661643	T	G	.	Sox3.mouse_HMG_2	4	1	-	3.3311568904214175	-3.5769183373716387	CAGCACTGTTATTGTTT
chr8	343367	343368	chr8:343368:A:T	rs6983362	A	T	.	Sox3.mouse_HMG_2	6	1	-	5.028809461340942	-1.8792657664521164	GGCCAATGTCATTGTTC
chr8	394542	394543	chr8:394543:T:C	rs935563	T	C	.	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr8	600390	600391	chr8:600391:A:G	rs7013024	A	G	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr8	615515	615516	chr8:615516:G:A	rs145066056	G	A	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr8	759031	759032	chr8:759032:C:T	rs74775952	C	T	c	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr8	909981	909982	chr8:909982:T:G	rs955980	T	G	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr8	1116541	1116542	chr8:1116542:T:A	rs80327531	T	A	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr8	1159205	1159206	chr8:1159206:A:G	rs557504813	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr8	1198204	1198205	chr8:1198205:T:G	rs17065804	T	G	-	Sox3.mouse_HMG_2	8	1	+	2.735099789100911	1.9214618560966985	GAGCAATTTCCTTGAGG
chr8	1289416	1289417	chr8:1289417:A:G	rs13277401	A	G	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr8	1742179	1742180	chr8:1742180:C:T	rs4876132	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr8	1755402	1755403	chr8:1755403:G:T	rs4595147	G	T	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr8	1884068	1884069	chr8:1884069:C:G	rs60187111	C	G	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr8	1886545	1886546	chr8:1886546:A:G	rs747249389	A	G	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr8	1941756	1941757	chr8:1941757:C:T	rs148977755	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr8	1978289	1978290	chr8:1978290:G:C	rs9657382	G	C	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr8	1995582	1995583	chr8:1995583:T:C	rs11997759	T	C	C	Sox3.mouse_HMG_2	15	1	+	10.586310464345395	6.806511046839598	CATCAGTGTCAGTGATG
chr8	2107591	2107592	chr8:2107592:T:C	rs6988144	T	C	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr8	2109298	2109299	chr8:2109299:C:T	rs2280895	C	T	T	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr8	2237320	2237321	chr8:2237321:T:A	rs62502201	T	A	T	Sox3.mouse_HMG_2	5	1	-	2.4114817128474906	-4.496593514945566	TATGAATGTGAGTGAGG
chr8	2242438	2242439	chr8:2242439:A:C	rs200120688	A	C	a	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr8	2493394	2493395	chr8:2493395:C:T	rs6998131	C	T	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr8	2916604	2916605	chr8:2916605:T:C	rs2604134	T	C	C	Sox3.mouse_HMG_2	1	1	+	4.817046123770624	4.796828146479979	CTTCAATGCTAGGGAAA
chr8	2989934	2989935	chr8:2989935:G:A	rs627327	G	A	g	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr8	3247373	3247374	chr8:3247374:C:G	rs35729878	C	G	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr8	3349350	3349351	chr8:3349351:G:C	rs117967253	G	C	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr8	3358762	3358763	chr8:3358763:C:T	rs9774400	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr8	3495789	3495790	chr8:3495790:T:C	rs7843935	T	C	T	Sox3.mouse_HMG_2	5	1	-	7.590277859672358	1.2009964252944685	GCTCAATGTCATTAAAG
chr8	3504484	3504485	chr8:3504485:G:C	rs7839049	G	C	g	Sox3.mouse_HMG_2	14	1	+	6.761261174544445	4.046798826727401	GATCAATGGCAGTTGTG
chr8	3525683	3525684	chr8:3525684:A:G	rs573338135	A	G	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr8	3573377	3573378	chr8:3573378:T:C	rs7844661	T	C	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr8	3646594	3646595	chr8:3646595:G:A	rs17066733	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr8	3763020	3763021	chr8:3763021:T:C	rs56027527	T	C	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr8	3771710	3771711	chr8:3771711:C:G	rs143025491	C	G	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr8	3780200	3780201	chr8:3780201:A:T	rs73658259	A	T	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr8	3780219	3780220	chr8:3780220:C:T	rs117082573	C	T	C	Sox3.mouse_HMG_2	11	1	-	3.606904997635742	-0.9645791306975429	GATTAATGCCAGTGTAC
chr8	3780240	3780241	chr8:3780241:T:C	rs73658260	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr8	3780241	3780242	chr8:3780242:T:C	rs969888982	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr8	3780489	3780490	chr8:3780490:G:C	rs73498893	G	C	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr8	3780524	3780525	chr8:3780525:C:T	rs10503217	C	T	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr8	3813117	3813118	chr8:3813118:T:G	rs7840023	T	G	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr8	4136190	4136191	chr8:4136191:G:A	rs13252372	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr8	4445956	4445957	chr8:4445957:G:C	rs1154066	G	C	g	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr8	4614709	4614710	chr8:4614710:G:C	rs2617109	G	C	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr8	4732534	4732535	chr8:4732535:T:C	rs13255293	T	C	T	Sox3.mouse_HMG_2	10	1	-	3.782009856523298	-3.1267449227919224	ATTCAATTGCATTGCAA
chr8	5455977	5455978	chr8:5455978:G:T	rs7827464	G	T	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr8	6127759	6127760	chr8:6127760:C:G	rs10089232	C	G	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr8	6302087	6302088	chr8:6302088:C:T	rs4840689	C	T	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr8	6302100	6302101	chr8:6302101:T:C	rs4840690	T	C	T	Sox3.mouse_HMG_2	10	1	-	3.503817621246629	-3.4049371580685923	GATCAAATGTAGTGGAG
chr8	6313802	6313803	chr8:6313803:A:C	rs6999296	A	C	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	6327836	6327837	chr8:6327837:C:T	rs71505115	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr8	6327839	6327840	chr8:6327840:G:C	rs12550696	G	C	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr8	6426494	6426495	chr8:6426495:T:C	chr8:6426495:T:C	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr8	6426499	6426500	chr8:6426500:G:A	rs56928655	G	A	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr8	6464112	6464113	chr8:6464113:T:A	rs145968388	T	A	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr8	6488319	6488320	chr8:6488320:A:G	rs2920680	A	G	A	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr8	6517667	6517668	chr8:6517668:C:T	rs79799803	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr8	6533305	6533306	chr8:6533306:T:C	rs145792022	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	6547950	6547951	chr8:6547951:C:T	rs111233592	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr8	6564331	6564332	chr8:6564332:T:C	rs73201303	T	C	T	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr8	6566470	6566471	chr8:6566471:G:A	rs2442528	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr8	6589334	6589335	chr8:6589335:G:A	rs73509269	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	6635678	6635679	chr8:6635679:A:G	rs2980654	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr8	6643022	6643023	chr8:6643023:C:T	rs1057091	C	T	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr8	6676444	6676445	chr8:6676445:G:A	rs12542460	G	A	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr8	6728061	6728062	chr8:6728062:A:G	rs17574102	A	G	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr8	6788376	6788377	chr8:6788377:A:G	rs2912051	A	G	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr8	6833813	6833814	chr8:6833814:G:A	rs550982753	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr8	6833822	6833823	chr8:6833823:A:T	rs79134989	A	T	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr8	6960119	6960120	chr8:6960120:G:T	rs111293704	G	T	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr8	6961721	6961722	chr8:6961722:T:C	rs62488525	T	C	.	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr8	7355433	7355434	chr8:7355434:G:T	rs1223566227	G	T	g	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr8	7521391	7521392	chr8:7521392:G:A	rs139200753	G	A	.	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr8	7836147	7836148	chr8:7836148:C:T	rs2740691	C	T	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr8	8152786	8152787	chr8:8152787:G:C	rs56189159	G	C	.	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr8	8314760	8314761	chr8:8314761:A:G	rs6601689	A	G	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr8	8331847	8331848	chr8:8331848:G:C	rs2979218	G	C	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr8	8352500	8352501	chr8:8352501:G:C	rs17604776	G	C	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr8	8480920	8480921	chr8:8480921:C:G	rs2979193	C	G	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr8	8545243	8545244	chr8:8545244:C:T	rs17153535	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr8	8736736	8736737	chr8:8736737:G:A	rs575895	G	A	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr8	8736743	8736744	chr8:8736744:C:T	rs575920	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr8	8740877	8740878	chr8:8740878:A:T	rs1703982	A	T	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr8	8845316	8845317	chr8:8845317:A:G	rs907180	A	G	A	Sox3.mouse_HMG_2	5	1	-	3.1885408072060373	3.1885408072060373	CAATATTGGTATTGATG
chr8	8860937	8860938	chr8:8860938:G:A	rs115077991	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr8	8941173	8941174	chr8:8941174:A:G	rs7844374	A	G	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr8	9009900	9009901	chr8:9009901:G:C	rs2915251	G	C	G	Sox3.mouse_HMG_2	13	1	+	7.347672271845495	0.9604122329182827	TGACAATGATAGTGAAA
chr8	9030111	9030112	chr8:9030112:G:A	rs78090829	G	A	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr8	9898938	9898939	chr8:9898939:G:T	rs12548011	G	T	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr8	10055671	10055672	chr8:10055672:C:T	rs2293090	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr8	10055678	10055679	chr8:10055679:C:G	rs796413431	C	G	C	Sox3.mouse_HMG_2	3	1	+	4.744430655873106	-1.3060886540161891	GCTCAATGCCAGAGAAA
chr8	10221261	10221262	chr8:10221262:G:A	rs12546027	G	A	G	Sox3.mouse_HMG_2	8	1	+	2.643559705792515	1.4247693210480183	TTTCAATTGCTGTGAAG
chr8	10554605	10554606	chr8:10554606:A:G	rs7004553	A	G	A	Sox3.mouse_HMG_2	6	1	-	2.952632378220228	-3.4366490561576617	CAGCAATTTCATGGAGG
chr8	10703644	10703645	chr8:10703645:T:C	rs6601506	T	C	C	Sox3.mouse_HMG_2	12	1	+	1.8473655159693605	-4.203601621961456	CAGCAATGCCACTGACT
chr8	10927988	10927989	chr8:10927989:A:G	rs141666755	A	G	A	Sox3.mouse_HMG_2	11	1	-	1.9221414076188614	-4.762232791841473	GAGCATTTGCATTGAGG
chr8	11069164	11069165	chr8:11069165:A:C	rs13248300	A	C	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr8	11280310	11280311	chr8:11280311:C:T	rs2572419	C	T	T	Sox3.mouse_HMG_2	0	1	+	4.907332397903577	4.422197383649468	CAACAATATTATTGTTA
chr8	11535690	11535691	chr8:11535691:C:T	rs78161669	C	T	c	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr8	11545173	11545174	chr8:11545174:G:A	rs2245030	G	A	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr8	11660205	11660206	chr8:11660206:C:G	rs4394350	C	G	G	Sox3.mouse_HMG_2	14	1	+	1.5524918721901326	4.266954220007176	CATCCATTTCATTGCGG
chr8	11692274	11692275	chr8:11692275:T:C	rs73537803	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr8	11738459	11738460	chr8:11738460:G:A	rs2898295	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr8	11754871	11754872	chr8:11754872:T:C	rs13273672	T	C	C	Sox3.mouse_HMG_2	10	1	-	3.965726130796609	-2.9430286485186117	AATCAATTCCATTTTTA
chr8	11796054	11796055	chr8:11796055:T:C	rs73663010	T	C	T	Sox3.mouse_HMG_2	10	1	-	2.8668271733879798	-4.04192760592724	TCACAATGTCAGTTATC
chr8	11965745	11965746	chr8:11965746:A:G	rs4841657	A	G	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr8	11965786	11965787	chr8:11965787:G:C	rs58120446	G	C	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr8	11965793	11965794	chr8:11965794:C:G	rs58637143	C	G	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr8	12185102	12185103	chr8:12185103:G:A	rs2684080	G	A	g	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr8	12427383	12427384	chr8:12427384:G:A	rs796127297	G	A	g	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr8	12552417	12552418	chr8:12552418:G:A	rs62495636	G	A	.	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr8	12756953	12756954	chr8:12756954:C:T	rs78815005	C	T	T	Sox3.mouse_HMG_2	11	1	-	3.9282240470166734	-0.6432600813166127	GTGCAATGTGAGTGATA
chr8	12771868	12771869	chr8:12771869:C:T	rs35649296	C	T	C	Sox3.mouse_HMG_2	9	1	+	9.879314558540003	10.571967101411962	AATCAATTTCATTGTAT
chr8	12810294	12810295	chr8:12810295:G:C	rs11773992	G	C	G	Sox3.mouse_HMG_2	13	1	+	2.9730801477198856	-3.4141798912073265	TATAAATGCTATTGTCT
chr8	12900894	12900895	chr8:12900895:A:G	rs2948372	A	G	G	Sox3.mouse_HMG_2	9	1	-	2.917042728384751	2.2243901855127923	TATCACAGGTAGTGATT
chr8	12928062	12928063	chr8:12928063:C:T	rs2947355	C	T	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr8	13001998	13001999	chr8:13001999:A:G	rs17123247	A	G	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr8	13269335	13269336	chr8:13269336:T:G	rs1188277	T	G	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	13297101	13297102	chr8:13297102:T:A	rs7007504	T	A	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr8	13362028	13362029	chr8:13362029:C:A	rs7010071	C	A	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr8	13440298	13440299	chr8:13440299:C:T	rs13272331	C	T	C	Sox3.mouse_HMG_2	0	1	+	2.6727803715851146	2.1876453573310077	CTTCATTGGTATTGTAT
chr8	13588022	13588023	chr8:13588023:T:C	rs80321840	T	C	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr8	13640501	13640502	chr8:13640502:C:T	rs7014659	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr8	13640533	13640534	chr8:13640534:G:A	rs28565094	G	A	G	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr8	13659074	13659075	chr8:13659075:A:C	rs17236421	A	C	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr8	13662595	13662596	chr8:13662596:A:G	rs17116999	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	13723597	13723598	chr8:13723598:G:A	rs11203518	G	A	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr8	13787504	13787505	chr8:13787505:G:T	rs7008145	G	T	g	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr8	13872696	13872697	chr8:13872697:G:A	rs11203539	G	A	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr8	14054179	14054180	chr8:14054180:C:A	rs17118485	C	A	c	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr8	14070491	14070492	chr8:14070492:C:T	rs9650351	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr8	14229774	14229775	chr8:14229775:G:T	rs9657231	G	T	G	Sox3.mouse_HMG_2	9	1	-	3.728877870785772	-1.5624508462265874	AAGCAATTACAGTGAAC
chr8	14229968	14229969	chr8:14229969:C:T	rs7830988	C	T	C	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr8	14697838	14697839	chr8:14697839:A:T	rs17321361	A	T	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr8	15027039	15027040	chr8:15027040:C:T	rs4631467	C	T	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr8	15152727	15152728	chr8:15152728:G:A	rs268376	G	A	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr8	15212629	15212630	chr8:15212630:C:A	rs62502013	C	A	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr8	15406876	15406877	chr8:15406877:G:C	rs60930385	G	C	G	Sox3.mouse_HMG_2	13	1	+	2.2349603498845676	-4.152299689042644	GCTCAATGAGATGGATG
chr8	15442687	15442688	chr8:15442688:T:G	rs17473297	T	G	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr8	15582559	15582560	chr8:15582560:G:A	rs1429085	G	A	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr8	15586693	15586694	chr8:15586694:T:C	rs17657878	T	C	T	Sox3.mouse_HMG_2	6	1	+	5.121560910497749	-1.2677205238801417	ACTGAATGCTATTGAAA
chr8	15851691	15851692	chr8:15851692:A:G	rs62501482	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr8	16086714	16086715	chr8:16086715:C:T	rs2410385	C	T	T	Sox3.mouse_HMG_2	11	1	-	2.396078672247516	-2.175405456085769	TAGCATTGACAGTGATG
chr8	16149885	16149886	chr8:16149886:A:C	rs351554	A	C	C	Sox3.mouse_HMG_2	10	1	+	10.275034199548077	3.366279420232855	TATCATTGTTAGTGATG
chr8	16560078	16560079	chr8:16560079:T:C	rs7007310	T	C	T	Sox3.mouse_HMG_2	11	1	+	3.746551883809762	-2.9378223156505725	TTAAAATTGTATTGATG
chr8	16688694	16688695	chr8:16688695:G:A	rs1654808	G	A	G	Sox3.mouse_HMG_2	15	1	+	2.721703499747312	3.155440951008653	TATCGATGTCATGGAGT
chr8	16779977	16779978	chr8:16779978:T:G	rs144371966	T	G	T	Sox3.mouse_HMG_2	8	1	-	7.540161297492198	8.318167649085238	CTACAATTATATTGAGT
chr8	16779991	16779992	chr8:16779992:G:C	rs117062586	G	C	G	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr8	16997293	16997294	chr8:16997294:C:T	rs10106536	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr8	17412123	17412124	chr8:17412124:A:G	rs1003299	A	G	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr8	17446831	17446832	chr8:17446832:G:C	rs11203860	G	C	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr8	17466617	17466618	chr8:17466618:A:G	rs540524620	A	G	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr8	17495394	17495395	chr8:17495395:A:G	rs74720879	A	G	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr8	17678012	17678013	chr8:17678013:T:C	rs117560744	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	17678578	17678579	chr8:17678579:T:C	rs7459632	T	C	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr8	17684433	17684434	chr8:17684434:T:G	rs61748836	T	G	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr8	17684447	17684448	chr8:17684448:C:T	rs74754090	C	T	C	Sox3.mouse_HMG_2	0	1	+	3.6419022255758495	3.156767211321741	CGTCAATTCAAGTGTTT
chr8	17693260	17693261	chr8:17693261:T:C	rs186022	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.0871407028263795	-3.3021407315515106	TCTCCATGTCAGTGACG
chr8	17693277	17693278	chr8:17693278:C:A	rs4921805	C	A	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr8	17820903	17820904	chr8:17820904:G:A	rs10090976	G	A	A	Sox3.mouse_HMG_2	11	1	-	6.205288315447775	12.889662514908112	AATCAATTTCACTGAGA
chr8	17831973	17831974	chr8:17831974:C:A	rs75293870	C	A	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr8	17882028	17882029	chr8:17882029:T:C	rs3739406	T	C	T	Sox3.mouse_HMG_2	6	1	+	3.937505710537299	-2.451775723840591	GATCAATGACAGTATTC
chr8	18083000	18083001	chr8:18083001:T:A	rs2213909	T	A	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr8	18172798	18172799	chr8:18172799:C:A	rs2040474	C	A	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr8	18572152	18572153	chr8:18572153:C:T	rs2717756	C	T	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr8	18582103	18582104	chr8:18582104:G:A	rs17596349	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr8	18672253	18672254	chr8:18672254:T:C	rs17695724	T	C	T	Sox3.mouse_HMG_2	16	1	+	5.86176462016789	4.25877157050744	GGTCAATTATATTTAAT
chr8	18803454	18803455	chr8:18803455:A:C	rs76728814	A	C	A	Sox3.mouse_HMG_2	12	1	-	4.646718664450903	-1.7398700082208127	TTTCAATTGTTTTGAGT
chr8	18945379	18945380	chr8:18945380:A:G	rs7013664	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr8	19110311	19110312	chr8:19110312:G:T	rs11779160	G	T	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr8	19141743	19141744	chr8:19141744:C:A	rs11778029	C	A	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr8	19141765	19141766	chr8:19141766:C:A	rs333031	C	A	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr8	19159670	19159671	chr8:19159671:A:G	chr8:19159671:A:G	A	G	a	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr8	19217759	19217760	chr8:19217760:C:T	rs2672244	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr8	19250989	19250990	chr8:19250990:C:T	rs2683310	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr8	19269525	19269526	chr8:19269526:G:A	rs2943427	G	A	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr8	19299394	19299395	chr8:19299395:A:G	rs2139766	A	G	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr8	19299417	19299418	chr8:19299418:T:C	rs17128148	T	C	T	Sox3.mouse_HMG_2	5	1	-	6.236032990005165	-0.15324844437272378	CATCAATGTTAATGGAC
chr8	19584296	19584297	chr8:19584297:C:T	rs115989737	C	T	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr8	19848660	19848661	chr8:19848661:A:T	rs4520184	A	T	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr8	19869535	19869536	chr8:19869536:C:T	rs1441778	C	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr8	19880748	19880749	chr8:19880749:G:A	rs6586876	G	A	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr8	20251851	20251852	chr8:20251852:G:A	rs2645384	G	A	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr8	20405896	20405897	chr8:20405897:G:A	rs1016646	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr8	20524022	20524023	chr8:20524023:T:G	rs17492141	T	G	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr8	20979189	20979190	chr8:20979190:A:G	rs573980	A	G	G	Sox3.mouse_HMG_2	1	1	-	4.288392124634261	4.2681741473436166	GTTCATTTATATTGAAG
chr8	21279841	21279842	chr8:21279842:T:C	rs73227165	T	C	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr8	21604068	21604069	chr8:21604069:G:A	rs7010418	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr8	21611311	21611312	chr8:21611312:T:C	rs75182652	T	C	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr8	21927477	21927478	chr8:21927478:A:G	rs4872110	A	G	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr8	21948501	21948502	chr8:21948502:T:A	rs182544764	T	A	T	Sox3.mouse_HMG_2	0	1	-	4.6587199536653925	5.565443715589759	AGGCAATTTCATTGTTG
chr8	22109837	22109838	chr8:22109838:G:A	rs7831322	G	A	g	Sox3.mouse_HMG_2	0	1	-	3.548642522447364	3.0635075081932555	CGGCAATGCCATTGTGT
chr8	22168130	22168131	chr8:22168131:G:A	rs7812993	G	A	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr8	22168166	22168167	chr8:22168167:T:G	rs7837768	T	G	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr8	22190721	22190722	chr8:22190722:T:C	rs73225853	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.9713690220207347	-2.417912412357156	CATCAATGCTAGTCGGG
chr8	22349856	22349857	chr8:22349857:T:C	rs79021774	T	C	C	Sox3.mouse_HMG_2	5	1	-	4.01812406120528	-2.371157373172611	CTTCAATGGCAGTGCCT
chr8	22459239	22459240	chr8:22459240:T:C	rs6996872	T	C	C	Sox3.mouse_HMG_2	6	1	+	3.318096195609416	-3.0711852387684733	AGACCATTTTAGTGATT
chr8	22463292	22463293	chr8:22463293:G:A	rs10108011	G	A	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr8	22594174	22594175	chr8:22594175:G:C	rs3064	G	C	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr8	22797755	22797756	chr8:22797756:C:T	rs4872027	C	T	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr8	22865215	22865216	chr8:22865216:T:G	rs144437734	T	G	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr8	23119040	23119041	chr8:23119041:C:T	rs60052954	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr8	23145880	23145881	chr8:23145881:G:A	rs111569580	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr8	23230660	23230661	chr8:23230661:G:T	rs4242393	G	T	G	Sox3.mouse_HMG_2	3	1	-	3.1050993964107425	-3.7955708428481625	TCTCAAATGTAGTGAAA
chr8	23291464	23291465	chr8:23291465:G:T	rs2272760	G	T	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr8	23366399	23366400	chr8:23366400:A:G	rs17089165	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.112510538588503	-2.2767708957893866	TTTCAATTGCATGGAGG
chr8	23366500	23366501	chr8:23366501:A:G	rs7818494	A	G	A	Sox3.mouse_HMG_2	11	1	+	7.377003814418794	11.94848794275208	TATCAATTTCAATGACT
chr8	23497945	23497946	chr8:23497946:G:A	rs7813840	G	A	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr8	23513182	23513183	chr8:23513183:G:A	rs17089318	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr8	23806432	23806433	chr8:23806433:C:T	rs4871904	C	T	C	Sox3.mouse_HMG_2	3	1	+	3.8143805287925496	-1.0424753464296714	TTTCAATTTTGTTGTTG
chr8	23925155	23925156	chr8:23925156:G:A	rs1705701	G	A	a	Sox3.mouse_HMG_2	0	1	+	5.335345155372645	3.6388528616699816	GTTCAATTGCATTTAAG
chr8	24339856	24339857	chr8:24339857:A:G	rs11998324	A	G	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr8	24654452	24654453	chr8:24654453:C:T	rs115209604	C	T	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr8	24706899	24706900	chr8:24706900:G:A	rs17052420	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr8	24717232	24717233	chr8:24717233:T:G	rs73220304	T	G	T	Sox3.mouse_HMG_2	5	1	-	4.831261998085908	-2.0768132297071493	GAATAATTTTATTGGAT
chr8	24784355	24784356	chr8:24784356:C:T	rs147093063	C	T	c	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr8	25226911	25226912	chr8:25226912:A:G	rs73216239	A	G	A	Sox3.mouse_HMG_2	2	1	-	2.8126635189004596	-3.5542337876252836	TGTCCATGGTATGGATT
chr8	25378076	25378077	chr8:25378077:G:A	rs2709624	G	A	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr8	25378081	25378082	chr8:25378082:C:G	rs111902374	C	G	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr8	25390070	25390071	chr8:25390071:G:T	rs1000798	G	T	G	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr8	25393108	25393109	chr8:25393109:T:C	rs147924957	T	C	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr8	25634225	25634226	chr8:25634226:C:T	rs1425740	C	T	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr8	25642392	25642393	chr8:25642393:A:G	rs2433072	A	G	G	Sox3.mouse_HMG_2	6	1	-	1.8739259938552817	-4.515355440522606	GCTCAGTGCTTTTGATA
chr8	25690566	25690567	chr8:25690567:A:G	rs17054185	A	G	A	Sox3.mouse_HMG_2	5	1	+	9.135322411090197	2.746040976712305	GGGCAATTTCATTGATC
chr8	25690749	25690750	chr8:25690750:G:T	rs2433096	G	T	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr8	25935402	25935403	chr8:25935403:G:A	rs17810433	G	A	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr8	26078047	26078048	chr8:26078048:C:G	rs13439370	C	G	C	Sox3.mouse_HMG_2	16	1	+	5.021880946639514	6.261152306666019	GGTCAATGCTATTAACC
chr8	26080660	26080661	chr8:26080661:C:T	rs4871965	C	T	C	Sox3.mouse_HMG_2	3	1	+	2.5043342964263555	-2.3525215787958667	CGACAAGGTCATTGTTT
chr8	26193406	26193407	chr8:26193407:G:A	rs12677259	G	A	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr8	26202156	26202157	chr8:26202157:C:T	rs12674998	C	T	T	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr8	26287357	26287358	chr8:26287358:C:G	rs375154917	C	G	C	Sox3.mouse_HMG_2	3	1	+	5.644211809074432	-0.4063075008148643	GAACAATGTCAGAGAAG
chr8	26294533	26294534	chr8:26294534:G:A	rs2046226	G	A	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr8	26422348	26422349	chr8:26422349:C:T	rs17055205	C	T	C	Sox3.mouse_HMG_2	13	1	-	5.796634139992259	-0.2550043641940533	TTTGAATGGCATTGAAA
chr8	26483736	26483737	chr8:26483737:T:C	rs10101608	T	C	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr8	26528895	26528896	chr8:26528896:A:G	rs73224175	A	G	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr8	26603546	26603547	chr8:26603547:A:G	rs7818193	A	G	A	Sox3.mouse_HMG_2	4	1	+	2.3698176883911706	-4.0194637459867195	GTTCAGTGGCATTGTGT
chr8	26643113	26643114	chr8:26643114:A:G	rs10093591	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr8	26813277	26813278	chr8:26813278:C:T	rs4732897	C	T	T	Sox3.mouse_HMG_2	3	1	+	3.558392836915458	-1.2984630383067646	AATCATTTTCAGTGACA
chr8	26843926	26843927	chr8:26843927:G:A	rs2036107	G	A	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr8	27144236	27144237	chr8:27144237:T:G	rs17056850	T	G	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr8	27400568	27400569	chr8:27400569:G:A	rs2115805	G	A	A	Sox3.mouse_HMG_2	9	1	-	4.545461142339461	5.23811368521142	ACTCAATTACGTTGATT
chr8	27454185	27454186	chr8:27454186:T:C	rs1879184	T	C	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr8	27545259	27545260	chr8:27545260:G:A	rs7341557	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr8	27616684	27616685	chr8:27616685:A:G	rs9314349	A	G	G	Sox3.mouse_HMG_2	10	1	+	3.175890509960416	-3.732864269354802	GATCATAGACATTGATT
chr8	27659259	27659260	chr8:27659260:A:G	rs140412565	A	G	.	Sox3.mouse_HMG_2	15	1	-	2.27239031810355	-1.5074090994022458	TGTCGGTGGCATTGATG
chr8	27939856	27939857	chr8:27939857:T:C	rs2726955	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr8	27974648	27974649	chr8:27974649:A:G	rs2727006	A	G	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr8	28001903	28001904	chr8:28001904:C:T	rs56858294	C	T	T	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr8	28008804	28008805	chr8:28008805:T:C	rs7831209	T	C	C	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr8	29062848	29062849	chr8:29062849:T:G	rs116634247	T	G	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr8	29090325	29090326	chr8:29090326:C:T	rs17526904	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr8	29192904	29192905	chr8:29192905:A:G	rs7815864	A	G	G	Sox3.mouse_HMG_2	12	1	-	5.0079110381984355	-1.0430560997323817	CATCAGTTTCATTGGAA
chr8	29317815	29317816	chr8:29317816:G:C	rs183070095	G	C	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr8	29402846	29402847	chr8:29402847:T:A	rs66476671	T	A	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr8	29499541	29499542	chr8:29499542:T:C	rs527431086	T	C	T	Sox3.mouse_HMG_2	8	1	+	3.256530296417892	2.0021083302622222	GCTGAATGTCAGTGGAT
chr8	29499558	29499559	chr8:29499559:T:C	rs11997735	T	C	T	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr8	29551641	29551642	chr8:29551642:A:G	rs13273498	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr8	29555331	29555332	chr8:29555332:T:C	rs6998142	T	C	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr8	29671315	29671316	chr8:29671316:C:T	rs76943696	C	T	C	Sox3.mouse_HMG_2	9	1	+	5.0426745279227045	5.735327070794662	CTTCAATGTCATTTTTA
chr8	29671340	29671341	chr8:29671341:T:C	rs28393030	T	C	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr8	29985301	29985302	chr8:29985302:T:C	rs4733085	T	C	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr8	30279310	30279311	chr8:30279311:G:A	rs10113031	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr8	30458644	30458645	chr8:30458645:C:G	rs145224483	C	G	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr8	30458645	30458646	chr8:30458646:A:G	rs13248936	A	G	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr8	30549447	30549448	chr8:30549448:A:G	rs974337804	A	G	A	Sox3.mouse_HMG_2	15	1	-	7.076171033327005	3.2963716158212093	TAACAATTTCATTTATG
chr8	30551163	30551164	chr8:30551164:T:C	rs4489288	T	C	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr8	30707385	30707386	chr8:30707386:G:T	rs149229478	G	T	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr8	30716229	30716230	chr8:30716230:C:A	rs3779648	C	A	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr8	30736011	30736012	chr8:30736012:A:C	rs116312656	A	C	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr8	30814288	30814289	chr8:30814289:T:C	rs6996100	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.237593221738897	-2.1516882126389927	CCCCAATGTCAGTGTTT
chr8	31058110	31058111	chr8:31058111:G:A	rs7016874	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.8102551780260443	-3.2413833261602667	TTTCATTGATAGTGAGG
chr8	31075098	31075099	chr8:31075099:C:G	rs2725383	C	G	G	Sox3.mouse_HMG_2	15	1	-	6.7443227672126635	5.701650494426893	GATCACTGCCAGTGAGT
chr8	31075108	31075109	chr8:31075109:G:C	rs2737320	G	C	G	Sox3.mouse_HMG_2	5	1	-	6.7443227672126635	7.263116560627831	GATCACTGCCAGTGAGT
chr8	31252307	31252308	chr8:31252308:T:C	rs373367903	T	C	T	Sox3.mouse_HMG_2	4	1	-	4.854443277296135	-1.5348381570817535	TAACAATGTCAGAGAAG
chr8	31252318	31252319	chr8:31252319:A:G	rs7002368	A	G	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr8	31846671	31846672	chr8:31846672:A:G	rs16878350	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr8	31849378	31849379	chr8:31849379:G:A	rs1481622	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr8	31952905	31952906	chr8:31952906:T:C	rs406422	T	C	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr8	32310005	32310006	chr8:32310006:A:G	rs73248780	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr8	32334750	32334751	chr8:32334751:G:C	rs73248796	G	C	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr8	32440663	32440664	chr8:32440664:G:C	rs1579033	G	C	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr8	32490571	32490572	chr8:32490572:G:A	rs13254149	G	A	G	Sox3.mouse_HMG_2	7	1	+	2.850611935946636	-3.77820955914142	TATCATTGGTATTAAAT
chr8	32571416	32571417	chr8:32571417:C:T	rs4733361	C	T	C	Sox3.mouse_HMG_2	4	1	-	1.7400186687556767	8.129300103133566	CCACGATGGCATTGACT
chr8	32579715	32579716	chr8:32579716:C:T	rs67993561	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	32589363	32589364	chr8:32589364:G:A	rs2439292	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr8	32838127	32838128	chr8:32838128:T:C	rs4733385	T	C	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr8	33243312	33243313	chr8:33243313:T:C	rs73594968	T	C	T	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr8	33389019	33389020	chr8:33389020:A:G	rs16880849	A	G	A	Sox3.mouse_HMG_2	15	1	-	4.163416206333529	0.38361678882773304	GGACAATTACATCGATG
chr8	33389043	33389044	chr8:33389044:G:A	rs16880851	G	A	G	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr8	33486170	33486171	chr8:33486171:A:G	rs28668083	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr8	33793771	33793772	chr8:33793772:T:C	rs4733455	T	C	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr8	34666960	34666961	chr8:34666961:T:C	rs4455823	T	C	C	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr8	34666994	34666995	chr8:34666995:C:T	rs16882722	C	T	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr8	35432480	35432481	chr8:35432481:A:T	rs77686568	A	T	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr8	35432511	35432512	chr8:35432512:T:A	rs17257770	T	A	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr8	36070790	36070791	chr8:36070791:A:G	rs2843936	A	G	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr8	36569279	36569280	chr8:36569280:G:C	rs73601428	G	C	C	Sox3.mouse_HMG_2	13	1	+	4.076138146626847	-2.311121892300365	GTTCAATTATCTTGAAA
chr8	37117862	37117863	chr8:37117863:A:G	rs12543240	A	G	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr8	37148123	37148124	chr8:37148124:G:A	rs73594798	G	A	G	Sox3.mouse_HMG_2	11	1	-	4.369241923719736	11.05361612318007	TATCAATTTCACTGGGT
chr8	37619236	37619237	chr8:37619237:G:C	rs6415419	G	C	C	Sox3.mouse_HMG_2	13	1	+	2.912637559260295	-3.474622479666917	CAGCAATGGTAGAGAGG
chr8	37629557	37629558	chr8:37629558:A:G	rs2843749	A	G	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr8	37741591	37741592	chr8:37741592:C:G	rs79706020	C	G	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr8	38176301	38176302	chr8:38176302:T:G	chr8:38176302:T:G	T	G	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr8	38505504	38505505	chr8:38505505:G:T	rs118106087	G	T	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr8	38718078	38718079	chr8:38718079:T:A	rs72634781	T	A	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr8	38876609	38876610	chr8:38876610:T:G	rs16887854	T	G	T	Sox3.mouse_HMG_2	16	1	+	6.11754181327482	5.753820123640875	GCTCAATGGTAGGGAAT
chr8	38915708	38915709	chr8:38915709:C:A	rs62504363	C	A	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr8	38976667	38976668	chr8:38976668:G:T	rs138567982	G	T	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr8	39615530	39615531	chr8:39615531:A:G	rs13263586	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr8	39933796	39933797	chr8:39933797:C:T	rs10504013	C	T	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr8	39933826	39933827	chr8:39933827:A:C	rs56045817	A	C	C	Sox3.mouse_HMG_2	5	1	-	6.129710198923501	6.648503992338668	AAACATTTTTATTGATA
chr8	39964647	39964648	chr8:39964648:G:A	rs2729463	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr8	40039468	40039469	chr8:40039469:C:T	rs964315384	C	T	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr8	40071069	40071070	chr8:40071070:T:C	rs7821900	T	C	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr8	40373493	40373494	chr8:40373494:C:T	rs76022435	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr8	40487018	40487019	chr8:40487019:T:C	rs10504026	T	C	T	Sox3.mouse_HMG_2	15	1	-	4.071951804362631	3.6382143531012905	CCTCAATGATGGTGAAT
chr8	40487033	40487034	chr8:40487034:G:A	rs74432720	G	A	G	Sox3.mouse_HMG_2	0	1	-	4.071951804362631	3.5868167901085246	CCTCAATGATGGTGAAT
chr8	40494026	40494027	chr8:40494027:T:C	rs16889493	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr8	40519388	40519389	chr8:40519389:A:G	rs2565097	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr8	40599071	40599072	chr8:40599072:C:T	rs6996028	C	T	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr8	40636367	40636368	chr8:40636368:T:C	rs2599649	T	C	C	Sox3.mouse_HMG_2	4	1	-	8.513816741972715	2.1245353075948232	GCTCAATGTCAGAGATG
chr8	40904266	40904267	chr8:40904267:C:A	rs6983747	C	A	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr8	41193031	41193032	chr8:41193032:A:G	rs111693909	A	G	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr8	41196645	41196646	chr8:41196646:T:A	rs72641826	T	A	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr8	41196652	41196653	chr8:41196653:G:A	rs1017593112	G	A	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr8	41197218	41197219	chr8:41197219:C:T	rs4527854	C	T	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr8	41301297	41301298	chr8:41301298:T:C	rs114769308	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.275218207332832	-2.1140632270450572	GTTCAATTTCTTTGTTT
chr8	41415713	41415714	chr8:41415714:T:G	rs1447214	T	G	T	Sox3.mouse_HMG_2	7	1	+	6.416260155359962	7.542151369205206	TTTCAATTTTATGGAAT
chr8	41474370	41474371	chr8:41474371:G:A	rs149293440	G	A	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr8	41512422	41512423	chr8:41512423:C:G	rs143780972	C	G	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr8	41542994	41542995	chr8:41542995:A:G	chr8:41542995:A:G	A	G	A	Sox3.mouse_HMG_2	15	1	-	2.650437027657143	-1.1293623898486527	GATCACAGGCAGTGATG
chr8	41543009	41543010	chr8:41543010:C:T	rs561933538	C	T	C	Sox3.mouse_HMG_2	0	1	-	2.650437027657143	0.9539447339544799	GATCACAGGCAGTGATG
chr8	41583678	41583679	chr8:41583679:T:A	rs141247285	T	A	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr8	41583724	41583725	chr8:41583725:G:A	rs112951504	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr8	41659467	41659468	chr8:41659468:T:C	rs57559291	T	C	T	Sox3.mouse_HMG_2	9	1	+	2.6478351268436255	1.9551825839716663	GATAAATGTTAGCGAGT
chr8	41659471	41659472	chr8:41659472:G:A	rs484328	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.6478351268436255	-3.4038033773426863	GATAAATGTTAGCGAGT
chr8	42112251	42112252	chr8:42112252:G:A	rs7840827	G	A	A	Sox3.mouse_HMG_2	11	1	+	6.004003183279268	1.432519054945983	TTTCCATTGTAGTGATT
chr8	42126124	42126125	chr8:42126125:A:G	rs146361821	A	G	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr8	42155820	42155821	chr8:42155821:T:C	rs59253046	T	C	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr8	42180222	42180223	chr8:42180223:G:A	rs185787026	G	A	G	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr8	42196349	42196350	chr8:42196350:T:A	rs1052460553	T	A	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr8	42198530	42198531	chr8:42198531:C:G	rs2299609	C	G	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr8	42644654	42644655	chr8:42644655:T:A	rs78966247	T	A	T	Sox3.mouse_HMG_2	14	1	-	1.7672103088576199	-2.252171214891025	GTTCAAAGTCATAGATC
chr8	46265678	46265679	chr8:46265679:G:A	rs566858923	G	A	.	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr8	47261779	47261780	chr8:47261780:C:T	rs72644587	C	T	C	Sox3.mouse_HMG_2	7	1	-	4.834553907668881	-1.7942675874191767	AATCAATGGTATTTGAG
chr8	47378123	47378124	chr8:47378124:G:T	rs7839055	G	T	G	Sox3.mouse_HMG_2	3	1	-	1.4224797069357604	-5.478190532323146	TGTCAAAGGTAGTGCTG
chr8	47430963	47430964	chr8:47430964:T:C	rs118107116	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.193523485510668	-2.1957579488672225	CATCAGTGTCAGTGTGT
chr8	47540232	47540233	chr8:47540233:G:A	rs62539108	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr8	49235640	49235641	chr8:49235641:A:G	rs13260469	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.429430592703335	-1.9598508416745544	GGTCAATGATGTTGAGC
chr8	49340402	49340403	chr8:49340403:C:T	rs1519835	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr8	50224769	50224770	chr8:50224770:A:G	rs2385812	A	G	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr8	50262709	50262710	chr8:50262710:G:A	rs6987291	G	A	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr8	51589292	51589293	chr8:51589293:G:A	rs7816231	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr8	51935595	51935596	chr8:51935596:A:C	rs16916974	A	C	A	Sox3.mouse_HMG_2	5	1	+	3.44542447612346	-3.4626507516695986	GATGAATGTTTTTGAGA
chr8	52022018	52022019	chr8:52022019:G:A	rs268933	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	52108493	52108494	chr8:52108494:T:C	rs28582357	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	52194512	52194513	chr8:52194513:C:T	rs12679133	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.4922736018822866	-3.5593649023040252	GCTCAACTTCAGTGGTC
chr8	52230384	52230385	chr8:52230385:T:C	rs17221900	T	C	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr8	52267011	52267012	chr8:52267012:A:G	rs57646775	A	G	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	52833964	52833965	chr8:52833965:G:A	rs17254973	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr8	52855550	52855551	chr8:52855551:G:A	rs7844657	G	A	G	Sox3.mouse_HMG_2	13	1	+	5.966916661346452	-0.08472184283986069	TTTGAATTACATTGATG
chr8	53104671	53104672	chr8:53104672:C:G	rs4532612	C	G	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr8	53147046	53147047	chr8:53147047:G:A	rs989909308	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	53154672	53154673	chr8:53154673:T:C	chr8:53154673:T:C	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr8	53154677	53154678	chr8:53154678:A:C	chr8:53154678:A:C	A	C	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr8	53218731	53218732	chr8:53218732:T:C	rs919042	T	C	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr8	53218775	53218776	chr8:53218776:A:T	rs118081261	A	T	A	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr8	53354460	53354461	chr8:53354461:A:G	rs7011944	A	G	A	Sox3.mouse_HMG_2	4	1	+	4.322867457783533	-2.066413976594356	TCTCAATTTCAGGGAAT
chr8	53906736	53906737	chr8:53906737:T:C	rs60106847	T	C	T	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr8	54032746	54032747	chr8:54032747:G:A	rs57747885	G	A	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr8	54307473	54307474	chr8:54307474:A:G	rs111928083	A	G	A	Sox3.mouse_HMG_2	5	1	+	8.766502267908109	2.377220833530219	GTTCAATGTTAATGAAT
chr8	54481510	54481511	chr8:54481511:G:C	rs147022884	G	C	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr8	54481708	54481709	chr8:54481709:T:G	rs1079005	T	G	G	Sox3.mouse_HMG_2	12	1	+	1.8313559961891515	-4.555232676482564	CCACCATTCCATTGATC
chr8	55193974	55193975	chr8:55193975:G:A	rs4416803	G	A	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	55219196	55219197	chr8:55219197:T:C	rs75752766	T	C	T	Sox3.mouse_HMG_2	16	1	-	3.612559253763592	3.8241336802488424	CAACAATGCTTTTGACA
chr8	55230091	55230092	chr8:55230092:G:A	rs4302824	G	A	A	Sox3.mouse_HMG_2	9	1	-	2.708516395269161	3.4011689381411205	TATCAACTTCAGTGGGA
chr8	55347331	55347332	chr8:55347332:G:C	rs988297	G	C	G	Sox3.mouse_HMG_2	3	1	-	3.346643143545559	-2.703876166343739	AATCAAGTCCAGTGAGA
chr8	55415904	55415905	chr8:55415905:G:A	rs7011423	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr8	55415935	55415936	chr8:55415936:G:A	rs7011439	G	A	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr8	55513256	55513257	chr8:55513257:C:T	rs2658932	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr8	55617799	55617800	chr8:55617800:A:T	chr8:55617800:A:T	A	T	A	Sox3.mouse_HMG_2	6	1	-	4.72753944127717	-2.1805357865158856	CATCAATGGTCTTTATA
chr8	55775961	55775962	chr8:55775962:G:A	rs75407219	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr8	56073971	56073972	chr8:56073972:C:G	rs2976045	C	G	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr8	56270530	56270531	chr8:56270531:A:G	rs12056556	A	G	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr8	56446953	56446954	chr8:56446954:G:A	rs114321882	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr8	56532689	56532690	chr8:56532690:T:A	rs2610036	T	A	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr8	56595296	56595297	chr8:56595297:C:T	rs58795823	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr8	56595306	56595307	chr8:56595307:T:C	rs1440751	T	C	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr8	56682395	56682396	chr8:56682396:G:A	rs75523753	G	A	A	Sox3.mouse_HMG_2	11	1	+	2.8853467098866536	-1.6861374184466307	GCGTAATGACAGTGATT
chr8	56759403	56759404	chr8:56759404:G:A	rs573085432	G	A	G	Sox3.mouse_HMG_2	7	1	+	3.1767028566916533	-3.452118638396403	TATCAATGTTATGAAGA
chr8	57513947	57513948	chr8:57513948:C:G	rs114555710	C	G	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr8	57995629	57995630	chr8:57995630:G:A	rs140568565	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr8	58071528	58071529	chr8:58071529:T:C	rs187698461	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr8	58196129	58196130	chr8:58196130:A:C	chr8:58196130:A:C	A	C	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr8	58282357	58282358	chr8:58282358:C:T	rs7007933	C	T	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr8	58283575	58283576	chr8:58283576:A:G	rs4475466	A	G	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr8	58357457	58357458	chr8:58357458:A:G	rs141924935	A	G	A	Sox3.mouse_HMG_2	1	1	+	2.39697257621519	0.3905846341957316	TATCAAGGTCATAGAAA
chr8	58366341	58366342	chr8:58366342:T:C	rs6471710	T	C	T	Sox3.mouse_HMG_2	12	1	+	3.8122183303759627	-2.238748807554854	GTTTAATTGCAGTGAGC
chr8	58543310	58543311	chr8:58543311:G:T	rs76362468	G	T	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr8	58666356	58666357	chr8:58666357:G:A	rs731685	G	A	G	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr8	58805423	58805424	chr8:58805424:T:C	rs62505114	T	C	T	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr8	58880218	58880219	chr8:58880219:C:T	rs2726556	C	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr8	58880240	58880241	chr8:58880241:A:G	rs2726557	A	G	G	Sox3.mouse_HMG_2	2	1	+	2.5266543381040947	0.6544364472077419	AGACAATGGCATTGCAG
chr8	59115801	59115802	chr8:59115802:A:G	rs138103900	A	G	A	Sox3.mouse_HMG_2	6	1	-	2.8813338289626187	-3.507947605415271	GAACAATGCGAATGATG
chr8	59148060	59148061	chr8:59148061:A:G	rs16924675	A	G	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr8	59600528	59600529	chr8:59600529:A:C	rs6986251	A	C	A	Sox3.mouse_HMG_2	10	1	+	4.3962048007845835	-2.5125499785306378	GATCAAGTCTATTGCTT
chr8	59709526	59709527	chr8:59709527:A:T	rs7834153	A	T	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr8	60396638	60396639	chr8:60396639:A:G	rs10504312	A	G	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr8	60643865	60643866	chr8:60643866:T:G	rs7822621	T	G	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr8	60777761	60777762	chr8:60777762:A:G	rs4738824	A	G	G	Sox3.mouse_HMG_2	4	1	+	4.720599229482488	-1.6686822048954013	GATCATTTTTATTTATA
chr8	60777976	60777977	chr8:60777977:A:G	rs979995729	A	G	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr8	60852348	60852349	chr8:60852349:C:G	rs118161607	C	G	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	60986948	60986949	chr8:60986949:T:C	rs78295145	T	C	T	Sox3.mouse_HMG_2	5	1	+	1.6041091906590386	1.6041091906590386	CATCATTGCTGTTGAGT
chr8	61022534	61022535	chr8:61022535:A:T	rs10100462	A	T	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr8	61037697	61037698	chr8:61037698:A:C	rs1545006	A	C	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	61376064	61376065	chr8:61376065:G:A	rs76772375	G	A	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr8	61557881	61557882	chr8:61557882:C:T	rs4737589	C	T	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr8	61591467	61591468	chr8:61591468:C:G	rs113487937	C	G	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr8	61825907	61825908	chr8:61825908:T:C	rs993792	T	C	T	Sox3.mouse_HMG_2	9	1	+	6.7646417454109375	6.071989202538978	GATAAATGATATTGTTT
chr8	62039124	62039125	chr8:62039125:C:A	rs11998202	C	A	C	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr8	62350988	62350989	chr8:62350989:C:T	rs13282612	C	T	c	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr8	62440153	62440154	chr8:62440154:T:A	rs16928922	T	A	T	Sox3.mouse_HMG_2	5	1	-	6.695777831229099	-0.21229739656396002	AATCAATGTTAGAGGTA
chr8	62472645	62472646	chr8:62472646:G:T	rs34558126	G	T	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr8	62488008	62488009	chr8:62488009:C:T	rs10091239	C	T	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr8	62598436	62598437	chr8:62598437:T:A	rs7844749	T	A	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr8	62699366	62699367	chr8:62699367:G:T	rs4738995	G	T	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr8	63389568	63389569	chr8:63389569:T:C	rs6981563	T	C	T	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr8	63647055	63647056	chr8:63647056:C:G	rs79063334	C	G	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr8	63749759	63749760	chr8:63749760:G:A	rs28549862	G	A	G	Sox3.mouse_HMG_2	16	1	-	3.3622338121802136	4.965226861840664	TAAAAATGTTATTGACC
chr8	64168561	64168562	chr8:64168562:A:G	rs2356341	A	G	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr8	64364887	64364888	chr8:64364888:T:G	rs114322169	T	G	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr8	64806774	64806775	chr8:64806775:C:A	rs138850919	C	A	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr8	65189952	65189953	chr8:65189953:G:A	rs72658989	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	65643971	65643972	chr8:65643972:G:A	rs118185709	G	A	G	Sox3.mouse_HMG_2	14	1	+	4.50244430008785	7.820510569859452	GATCAATTGCAATGGGA
chr8	65990913	65990914	chr8:65990914:G:A	rs16932389	G	A	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr8	65990939	65990940	chr8:65990940:T:C	rs16932391	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.011456286696409	-2.3778251476814822	CATTAATGATTTTGATC
chr8	65990955	65990956	chr8:65990956:T:C	rs78535683	T	C	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr8	66011368	66011369	chr8:66011369:G:A	rs116972997	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr8	66446458	66446459	chr8:66446459:A:G	rs7014273	A	G	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr8	66459598	66459599	chr8:66459599:T:A	rs890515	T	A	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr8	66463765	66463766	chr8:66463766:G:C	rs78348791	G	C	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr8	67277767	67277768	chr8:67277768:A:T	rs114342295	A	T	A	Sox3.mouse_HMG_2	10	1	+	2.6803748268693264	-4.228379952445893	GATGAATGCTAATGACT
chr8	67377419	67377420	chr8:67377420:G:A	rs80189252	G	A	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr8	67627167	67627168	chr8:67627168:T:C	rs7814911	T	C	T	Sox3.mouse_HMG_2	9	1	+	5.591530129958271	4.898877587086312	AGTAAATTATATTGATG
chr8	67641734	67641735	chr8:67641735:C:G	rs4560766	C	G	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr8	67792218	67792219	chr8:67792219:C:T	rs76518199	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr8	67792225	67792226	chr8:67792226:T:G	chr8:67792226:T:G	T	G	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr8	68010034	68010035	chr8:68010035:G:A	rs13274293	G	A	g	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr8	68597961	68597962	chr8:68597962:A:T	rs7819024	A	T	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr8	68612177	68612178	chr8:68612178:C:T	rs16934777	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr8	68731896	68731897	chr8:68731897:T:C	rs16934973	T	C	T	Sox3.mouse_HMG_2	5	1	+	2.329639446080064	2.329639446080064	GATCATTGGGATTGGTG
chr8	68970992	68970993	chr8:68970993:C:A	rs17613308	C	A	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr8	68971003	68971004	chr8:68971004:G:C	rs74501158	G	C	G	Sox3.mouse_HMG_2	3	1	+	2.4933379480587066	8.543857257948005	CATGAATGTTAGTCAGG
chr8	69506885	69506886	chr8:69506886:A:G	rs1441198	A	G	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr8	69506898	69506899	chr8:69506899:C:G	rs1441197	C	G	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr8	69569182	69569183	chr8:69569183:G:A	rs73293332	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr8	69597247	69597248	chr8:69597248:C:T	rs150410715	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr8	69705926	69705927	chr8:69705927:T:C	rs918004551	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.17730055728186	-2.2119808770960305	AATCAATTCCATTCTTG
chr8	70099721	70099722	chr8:70099722:T:C	rs3892266	T	C	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr8	70273509	70273510	chr8:70273510:A:G	rs2290878	A	G	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr8	70454696	70454697	chr8:70454697:A:G	rs62530515	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	70465794	70465795	chr8:70465795:T:G	rs10111857	T	G	G	Sox3.mouse_HMG_2	14	1	-	4.5071339951345335	-1.5253946224541113	CTTCACTGCTAGTGAAG
chr8	70666282	70666283	chr8:70666283:A:C	rs11987501	A	C	a	Sox3.mouse_HMG_2	12	1	-	5.3487913249712635	-1.0377973477004523	TCTCAATGATAATGAAA
chr8	71000266	71000267	chr8:71000267:T:C	rs2732149	T	C	C	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr8	71000303	71000304	chr8:71000304:G:T	rs2639945	G	T	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr8	71058573	71058574	chr8:71058574:G:C	rs10110676	G	C	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr8	71131152	71131153	chr8:71131153:G:A	rs888857400	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr8	71176012	71176013	chr8:71176013:G:C	rs72652101	G	C	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr8	71198015	71198016	chr8:71198016:A:G	rs56115941	A	G	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr8	71278995	71278996	chr8:71278996:A:G	rs13254654	A	G	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr8	71279049	71279050	chr8:71279050:C:T	rs16937550	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr8	71280614	71280615	chr8:71280615:C:T	rs116318425	C	T	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr8	71604206	71604207	chr8:71604207:T:C	rs77331111	T	C	T	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr8	71696939	71696940	chr8:71696940:C:T	rs34554315	C	T	C	Sox3.mouse_HMG_2	13	1	-	6.568478168615578	0.5168396644292667	TATCAATGACAATGGTG
chr8	71740831	71740832	chr8:71740832:T:C	rs9657037	T	C	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr8	71927894	71927895	chr8:71927895:T:C	rs2218398	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.274710469232713	-3.114570965145177	GTTCAATGTCAGTATTC
chr8	72007390	72007391	chr8:72007391:T:C	rs1531750	T	C	C	Sox3.mouse_HMG_2	4	1	-	3.008396152034358	-3.3808852823435314	CTTCAGTGTCATTAATA
chr8	72144449	72144450	chr8:72144450:A:G	rs4415362	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.325045387582189	-3.064236046795701	AGTCAACTTCAGTGAGG
chr8	72651790	72651791	chr8:72651791:A:G	rs1440341	A	G	G	Sox3.mouse_HMG_2	2	1	-	9.909358518128277	3.5424612116025327	TTTCAATGTTATTGTAT
chr8	72683262	72683263	chr8:72683263:T:A	rs1440359	T	A	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr8	72810566	72810567	chr8:72810567:G:A	rs10957619	G	A	g	Sox3.mouse_HMG_2	5	1	-	1.7555034177032702	1.7555034177032702	GGACACTGGCAGTGAAA
chr8	73181438	73181439	chr8:73181439:T:C	rs71525199	T	C	c	Sox3.mouse_HMG_2	8	1	+	2.561242606018176	1.3068206398625062	CCGCAATGTCTGTGATT
chr8	73181460	73181461	chr8:73181461:A:G	rs4607600	A	G	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr8	73372075	73372076	chr8:73372076:C:T	rs193232648	C	T	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr8	73588193	73588194	chr8:73588194:G:A	rs73328776	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr8	73757512	73757513	chr8:73757513:G:C	rs182396688	G	C	G	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr8	73877720	73877721	chr8:73877721:G:A	rs138836581	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr8	73992528	73992529	chr8:73992529:G:C	rs4738409	G	C	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr8	74106149	74106150	chr8:74106150:A:G	rs17326309	A	G	a	Sox3.mouse_HMG_2	6	1	-	4.386957999571526	-2.002323434806364	CCACAATTGCATTGCTG
chr8	74601595	74601596	chr8:74601596:G:T	rs6472867	G	T	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr8	74778901	74778902	chr8:74778902:T:C	rs6472875	T	C	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr8	74997868	74997869	chr8:74997869:C:T	rs2383928	C	T	C	Sox3.mouse_HMG_2	9	1	+	2.8255373907285097	3.518189933600469	GAGTAATTTCAGTGGTG
chr8	75814511	75814512	chr8:75814512:C:G	rs2977343	C	G	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr8	75924186	75924187	chr8:75924187:C:T	rs117497138	C	T	C	Sox3.mouse_HMG_2	0	1	+	4.376798984964989	3.891663970710881	CGTCAGTGCCAGTGAGA
chr8	75924187	75924188	chr8:75924188:G:A	rs76295277	G	A	G	Sox3.mouse_HMG_2	1	1	+	4.376798984964989	6.383186926984448	CGTCAGTGCCAGTGAGA
chr8	76262581	76262582	chr8:76262582:A:G	rs115021606	A	G	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr8	76334105	76334106	chr8:76334106:T:G	rs10156271	T	G	G	Sox3.mouse_HMG_2	2	1	+	6.9470482884513425	1.7931736217714511	GGTCAATTGCAGTCATG
chr8	76427781	76427782	chr8:76427782:A:T	rs4434598	A	T	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr8	76530212	76530213	chr8:76530213:C:T	rs577418164	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr8	76674299	76674300	chr8:76674300:A:C	chr8:76674300:A:C	A	C	A	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr8	76855560	76855561	chr8:76855561:C:T	rs16939379	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr8	77041808	77041809	chr8:77041809:T:C	rs13268528	T	C	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr8	77131553	77131554	chr8:77131554:T:C	rs17449553	T	C	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr8	77181600	77181601	chr8:77181601:C:A	rs7821178	C	A	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr8	77398734	77398735	chr8:77398735:G:C	rs10081460	G	C	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr8	77498858	77498859	chr8:77498859:G:A	rs264814	G	A	A	Sox3.mouse_HMG_2	16	1	-	3.0047785405289966	4.607771590189447	AGACAATGTCAGTAATC
chr8	77767159	77767160	chr8:77767160:A:G	rs7827238	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr8	77779599	77779600	chr8:77779600:A:G	rs28572159	A	G	A	Sox3.mouse_HMG_2	4	1	+	6.196607857416325	-0.19267357696156479	TTTCAATTCCATTTATA
chr8	77821465	77821466	chr8:77821466:T:C	rs2339076	T	C	C	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr8	78466592	78466593	chr8:78466593:T:C	rs10085999	T	C	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr8	78507787	78507788	chr8:78507788:A:G	rs183394476	A	G	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr8	78545823	78545824	chr8:78545824:T:C	rs117799949	T	C	T	Sox3.mouse_HMG_2	10	1	-	4.014492418849984	-2.8942623604652353	GATGATTTCTATTGATG
chr8	78646120	78646121	chr8:78646121:C:G	rs62517750	C	G	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr8	78881299	78881300	chr8:78881300:T:C	rs62517768	T	C	T	Sox3.mouse_HMG_2	8	1	+	2.135859111886128	0.8814371457304598	CATCAATGTCAGCAAGG
chr8	78986559	78986560	chr8:78986560:G:A	rs639261	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr8	79213790	79213791	chr8:79213791:T:A	rs1380638	T	A	T	Sox3.mouse_HMG_2	5	1	-	4.850922995642632	-2.0571522321504254	TTTCAATGTCCTTGACT
chr8	79246467	79246468	chr8:79246468:G:A	rs72671104	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr8	79465305	79465306	chr8:79465306:C:T	rs57603148	C	T	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr8	79465306	79465307	chr8:79465307:G:A	rs9643747	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr8	79616598	79616599	chr8:79616599:A:T	rs34110875	A	T	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr8	79636589	79636590	chr8:79636590:A:G	rs17452334	A	G	A	Sox3.mouse_HMG_2	14	1	-	4.711201781307636	2.698054687467637	GATCAATTGCATAGTAT
chr8	79700478	79700479	chr8:79700479:C:T	rs2920942	C	T	C	Sox3.mouse_HMG_2	7	1	-	2.6017795837304147	-4.0270419113576414	CTTCAATGTGAGTCATG
chr8	79751072	79751073	chr8:79751073:A:G	rs2461043	A	G	g	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr8	79802443	79802444	chr8:79802444:C:A	rs2247009	C	A	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr8	80681994	80681995	chr8:80681995:T:C	rs74852248	T	C	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr8	80682039	80682040	chr8:80682040:T:C	rs73692000	T	C	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr8	80757985	80757986	chr8:80757986:T:C	rs73692128	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.734788769148818	-1.6544926652290697	CTTCAATTACAGTCATG
chr8	80820334	80820335	chr8:80820335:A:G	rs10504717	A	G	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr8	81004739	81004740	chr8:81004740:A:G	rs920984	A	G	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr8	81079113	81079114	chr8:81079114:T:C	rs4515498	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	81100994	81100995	chr8:81100995:C:T	rs56827627	C	T	C	Sox3.mouse_HMG_2	8	1	+	3.1808266777126497	4.435248643868319	TGAAAATGCTATTGAAT
chr8	81133026	81133027	chr8:81133027:A:C	rs10088396	A	C	C	Sox3.mouse_HMG_2	8	1	-	3.2483305400825264	2.434692607078314	CCACAATGTTATTTACT
chr8	81243410	81243411	chr8:81243411:A:G	rs7461989	A	G	A	Sox3.mouse_HMG_2	16	1	-	4.1896369154095945	2.586643865749144	TGTCAATTTGATTGGAT
chr8	81489444	81489445	chr8:81489445:G:A	rs16909233	G	A	G	Sox3.mouse_HMG_2	1	1	-	5.4840264147663484	5.504244392056994	CCTCAATGCCATTTAAA
chr8	81652966	81652967	chr8:81652967:A:G	rs2142316	A	G	G	Sox3.mouse_HMG_2	11	1	-	5.859165469089135	-0.8252087303712012	TATCCATTCTATTGACT
chr8	81745497	81745498	chr8:81745498:A:G	rs148698659	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr8	81745734	81745735	chr8:81745735:A:G	rs11987442	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr8	81913278	81913279	chr8:81913279:C:A	rs4610705	C	A	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr8	81913320	81913321	chr8:81913321:T:G	rs765755	T	G	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr8	82264104	82264105	chr8:82264105:A:G	rs7001385	A	G	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr8	82674646	82674647	chr8:82674647:C:T	rs35258328	C	T	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr8	82674691	82674692	chr8:82674692:C:T	rs34289964	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	82839021	82839022	chr8:82839022:A:G	rs67048258	A	G	A	Sox3.mouse_HMG_2	16	1	-	3.2208729417493998	1.6178798920889488	AAGCAATGTTCTTGAGT
chr8	82842027	82842028	chr8:82842028:T:C	rs1997056	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr8	84180885	84180886	chr8:84180886:A:C	rs1550215	A	C	.	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr8	84210786	84210787	chr8:84210787:C:T	rs11780481	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr8	84335901	84335902	chr8:84335902:C:A	rs77519151	C	A	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr8	84659061	84659062	chr8:84659062:G:A	rs2029358	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr8	84742642	84742643	chr8:84742643:T:C	rs11988092	T	C	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr8	84883117	84883118	chr8:84883118:C:A	rs1365672	C	A	A	Sox3.mouse_HMG_2	15	1	-	4.54285200660561	7.2799791513256356	TTATAATGGTATTGAGT
chr8	84949007	84949008	chr8:84949008:G:C	rs9693371	G	C	c	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr8	84949054	84949055	chr8:84949055:A:T	rs12542468	A	T	a	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr8	85601758	85601759	chr8:85601759:T:A	rs16914032	T	A	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr8	86338155	86338156	chr8:86338156:C:T	rs73262925	C	T	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr8	86338205	86338206	chr8:86338206:C:T	rs73262927	C	T	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr8	86414649	86414650	chr8:86414650:A:T	rs915863592	A	T	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr8	86512778	86512779	chr8:86512779:T:C	rs35154764	T	C	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	87428244	87428245	chr8:87428245:A:G	rs16868510	A	G	A	Sox3.mouse_HMG_2	15	1	-	1.4546369965511723	-2.3251624209546233	CCTCAAAGCCATTCATT
chr8	87428264	87428265	chr8:87428265:A:C	rs9297322	A	C	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr8	87681481	87681482	chr8:87681482:C:G	rs7834472	C	G	G	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr8	87696429	87696430	chr8:87696430:G:A	rs12543694	G	A	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr8	89001887	89001888	chr8:89001888:A:G	rs2464701	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr8	89043705	89043706	chr8:89043706:A:G	rs74382089	A	G	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr8	89753371	89753372	chr8:89753372:A:G	rs62533561	A	G	A	Sox3.mouse_HMG_2	2	1	-	3.4685543382169857	-2.8983429683087585	GGTTGATGTCATTGAAT
chr8	89815823	89815824	chr8:89815824:T:C	rs40638	T	C	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr8	89919478	89919479	chr8:89919479:A:G	rs80268568	A	G	A	Sox3.mouse_HMG_2	15	1	-	2.910733530159889	-0.8690658873459066	TAACAATGTGATTTATG
chr8	91037743	91037744	chr8:91037744:C:T	rs12545269	C	T	C	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr8	91168924	91168925	chr8:91168925:T:C	rs62526707	T	C	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr8	91198017	91198018	chr8:91198018:T:A	rs6987417	T	A	T	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr8	91304816	91304817	chr8:91304817:T:C	rs79907341	T	C	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr8	91657091	91657092	chr8:91657092:T:C	chr8:91657092:T:C	T	C	T	Sox3.mouse_HMG_2	12	1	+	6.000020211431356	-0.050946926499460865	ATTCAATGGTGTTGATC
chr8	91657101	91657102	chr8:91657102:C:G	chr8:91657102:C:G	C	G	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr8	91867025	91867026	chr8:91867026:C:T	rs735288	C	T	C	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr8	92479064	92479065	chr8:92479065:A:C	rs4734231	A	C	A	Sox3.mouse_HMG_2	14	1	-	9.577804068017468	10.27911932199451	TTTCAATGCTAGTGTTT
chr8	92501457	92501458	chr8:92501458:C:T	rs72675535	C	T	C	Sox3.mouse_HMG_2	8	1	+	2.001742178573283	3.256164144728954	GTTCAATGCCATGGTAG
chr8	92632527	92632528	chr8:92632528:C:T	rs13438957	C	T	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr8	92978274	92978275	chr8:92978275:C:G	rs79559352	C	G	C	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr8	93890335	93890336	chr8:93890336:A:G	rs118151775	A	G	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr8	94047843	94047844	chr8:94047844:A:G	rs3018887	A	G	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr8	94049637	94049638	chr8:94049638:T:C	rs75674068	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr8	94200244	94200245	chr8:94200245:G:C	rs755637547	G	C	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr8	94657929	94657930	chr8:94657930:C:A	rs10808670	C	A	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr8	94953589	94953590	chr8:94953590:C:T	rs72676996	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.5064570396202397	-3.545181464566072	TATCAGTGTGAGTGAAG
chr8	95238318	95238319	chr8:95238319:T:G	rs72664683	T	G	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr8	95376919	95376920	chr8:95376920:G:C	rs28545626	G	C	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr8	95520396	95520397	chr8:95520397:T:G	rs1500906	T	G	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr8	96387822	96387823	chr8:96387823:G:C	rs62516308	G	C	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr8	96617677	96617678	chr8:96617678:G:A	rs10955078	G	A	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr8	96809411	96809412	chr8:96809412:A:G	rs185435006	A	G	A	Sox3.mouse_HMG_2	6	1	-	2.5916815182530093	-3.7975999161248812	GTTCCATTTTATTGCTG
chr8	97119530	97119531	chr8:97119531:T:G	rs67964310	T	G	G	Sox3.mouse_HMG_2	8	1	-	6.756557205354625	7.534563556947665	GATCAATGATTTTGTTT
chr8	97459825	97459826	chr8:97459826:C:T	rs498150	C	T	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr8	97459831	97459832	chr8:97459832:T:C	rs899395	T	C	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr8	97471193	97471194	chr8:97471194:T:C	rs7004977	T	C	T	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr8	97595877	97595878	chr8:97595878:T:A	rs75560357	T	A	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr8	97812651	97812652	chr8:97812652:T:C	rs10504979	T	C	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr8	97933150	97933151	chr8:97933151:T:C	rs4735514	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.9406901791535125	-3.4485912552243754	TCTTCATGGCATTGATT
chr8	97940597	97940598	chr8:97940598:C:T	rs2512024	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr8	98373164	98373165	chr8:98373165:C:T	rs11994260	C	T	C	Sox3.mouse_HMG_2	9	1	+	3.237745377166896	3.930397920038856	CATAAATGGCAGTTATT
chr8	98471162	98471163	chr8:98471163:G:A	rs16897031	G	A	g	Sox3.mouse_HMG_2	13	1	+	6.655764675882689	0.6041261716963768	GATCAATGGTATCGGAA
chr8	98807665	98807666	chr8:98807666:G:C	rs2442015	G	C	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr8	99024814	99024815	chr8:99024815:C:A	rs78791374	C	A	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr8	100038795	100038796	chr8:100038796:C:A	rs930965	C	A	A	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr8	100383292	100383293	chr8:100383293:A:G	rs116796001	A	G	A	Sox3.mouse_HMG_2	5	1	+	1.7240646210797061	-4.665216813298182	CAACAATGGTGCTGATT
chr8	100504295	100504296	chr8:100504296:G:T	rs11777328	G	T	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr8	100745547	100745548	chr8:100745548:C:T	rs111395916	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr8	100846421	100846422	chr8:100846422:G:A	rs79678804	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr8	100925145	100925146	chr8:100925146:A:G	rs3105460	A	G	a	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr8	101071223	101071224	chr8:101071224:A:G	rs737707	A	G	A	Sox3.mouse_HMG_2	5	1	+	6.544884038601561	0.1556026042236695	GATCAATTCCAGTAAAG
chr8	101180864	101180865	chr8:101180865:A:G	rs2197624	A	G	g	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr8	101239928	101239929	chr8:101239929:A:G	rs16899127	A	G	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr8	101345453	101345454	chr8:101345454:A:G	rs13276679	A	G	G	Sox3.mouse_HMG_2	14	1	+	3.1006642259474875	-0.2174020438241136	GTCCAATTCCAGTGAGG
chr8	101500157	101500158	chr8:101500158:T:A	rs487053	T	A	T	Sox3.mouse_HMG_2	2	1	+	3.714216248697198	0.4325594729136621	GATAAAGGGTAGTGATT
chr8	101574902	101574903	chr8:101574903:T:C	rs73701932	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr8	101952521	101952522	chr8:101952522:A:C	rs16868791	A	C	A	Sox3.mouse_HMG_2	0	1	+	2.2759631910021896	3.667821967180665	AATCATTTCCAGTGTTG
chr8	102238214	102238215	chr8:102238215:C:G	rs28999671	C	G	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr8	102243716	102243717	chr8:102243717:G:A	rs2853232	G	A	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr8	102486088	102486089	chr8:102486089:T:C	rs7002717	T	C	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr8	102584201	102584202	chr8:102584202:G:A	rs545477396	G	A	G	Sox3.mouse_HMG_2	13	1	+	4.404906084965983	-1.646732419220329	TAAAAATGTTATTGAGC
chr8	102590501	102590502	chr8:102590502:G:T	rs753754099	G	T	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr8	102728788	102728789	chr8:102728789:A:G	rs2513943	A	G	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr8	102790530	102790531	chr8:102790531:C:T	rs62522569	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr8	102956766	102956767	chr8:102956767:T:A	rs76798148	T	A	T	Sox3.mouse_HMG_2	16	1	-	4.953343193528117	5.528639309647313	CCTCAATTCTATAGAGA
chr8	102987836	102987837	chr8:102987837:C:A	rs2513874	C	A	C	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr8	103111077	103111078	chr8:103111078:G:A	rs33999374	G	A	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr8	103151693	103151694	chr8:103151694:T:C	rs28672985	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr8	103203427	103203428	chr8:103203428:G:A	rs78651620	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr8	103343976	103343977	chr8:103343977:G:T	rs827579	G	T	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr8	103568922	103568923	chr8:103568923:T:C	rs10505045	T	C	T	Sox3.mouse_HMG_2	11	1	+	2.605701971222424	-4.078672228237911	CATCAGTGGCATTGCAA
chr8	103613430	103613431	chr8:103613431:G:C	rs13250282	G	C	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr8	103647360	103647361	chr8:103647361:A:G	rs117900220	A	G	A	Sox3.mouse_HMG_2	15	1	-	3.378707565800871	-0.40109185170492473	GGCCAATGTCCTTGATG
chr8	103707290	103707291	chr8:103707291:T:A	rs2114249	T	A	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr8	103763931	103763932	chr8:103763932:C:G	rs9297340	C	G	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr8	103764603	103764604	chr8:103764604:G:A	rs3110458	G	A	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr8	103790762	103790763	chr8:103790763:A:C	rs72679498	A	C	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr8	103902656	103902657	chr8:103902657:T:C	rs10091132	T	C	T	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr8	103902668	103902669	chr8:103902669:A:G	rs13258713	A	G	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr8	104210777	104210778	chr8:104210778:A:T	rs977335	A	T	T	Sox3.mouse_HMG_2	10	1	-	4.724227361123611	11.632982140438832	GGTCAATTTCTGTGAAA
chr8	104273602	104273603	chr8:104273603:T:A	rs2441826	T	A	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr8	104712910	104712911	chr8:104712911:A:G	rs139058924	A	G	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr8	105076973	105076974	chr8:105076974:T:C	rs2956785	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr8	105145934	105145935	chr8:105145935:G:A	rs73306402	G	A	G	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr8	105464789	105464790	chr8:105464790:G:T	rs33916644	G	T	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr8	105569299	105569300	chr8:105569300:A:T	rs6993770	A	T	A	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr8	105598581	105598582	chr8:105598582:T:G	rs6982399	T	G	T	Sox3.mouse_HMG_2	3	1	+	3.216845838569049	2.023182403901975	GAATAATGCCATAGATG
chr8	105642044	105642045	chr8:105642045:G:A	rs2165646	G	A	A	Sox3.mouse_HMG_2	9	1	-	3.8240152569459	4.516667799817859	CTTGAATGACAGTGAGT
chr8	105683169	105683170	chr8:105683170:G:A	rs150480559	G	A	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr8	106047354	106047355	chr8:106047355:A:G	rs74761492	A	G	A	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr8	106087303	106087304	chr8:106087304:A:G	rs148078989	A	G	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr8	106331032	106331033	chr8:106331033:A:G	rs7834655	A	G	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr8	106571443	106571444	chr8:106571444:T:C	rs80349040	T	C	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr8	106624659	106624660	chr8:106624660:A:G	rs3134134	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr8	106629518	106629519	chr8:106629519:A:G	rs57623085	A	G	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr8	106726058	106726059	chr8:106726059:T:G	rs376876409	T	G	T	Sox3.mouse_HMG_2	2	1	+	3.802971311649264	-1.3509033550306266	TATCATTGCTATGGATA
chr8	106726066	106726067	chr8:106726067:A:G	rs757287230	A	G	A	Sox3.mouse_HMG_2	10	1	+	3.802971311649264	-3.105783467665956	TATCATTGCTATGGATA
chr8	107188267	107188268	chr8:107188268:C:T	rs2584377	C	T	C	Sox3.mouse_HMG_2	3	1	+	4.41326476498546	-0.4435911102367624	CATCAGTTTTTTTGATA
chr8	107353803	107353804	chr8:107353804:C:T	rs1283651	C	T	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr8	107458157	107458158	chr8:107458158:A:G	rs73313679	A	G	A	Sox3.mouse_HMG_2	1	1	+	7.7211451318806	5.714757189861143	CATTAATTACAGTGATC
chr8	107614599	107614600	chr8:107614600:G:A	rs190735	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	107666070	107666071	chr8:107666071:T:G	rs4734152	T	G	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr8	107867976	107867977	chr8:107867977:A:G	rs937294	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr8	108067152	108067153	chr8:108067153:A:C	rs7005475	A	C	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr8	108081803	108081804	chr8:108081804:C:T	rs142665174	C	T	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr8	108918366	108918367	chr8:108918367:T:C	rs56250608	T	C	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr8	108942645	108942646	chr8:108942646:C:T	rs116911578	C	T	C	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr8	109042197	109042198	chr8:109042198:A:G	rs4332103	A	G	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr8	109052810	109052811	chr8:109052811:G:A	rs72678620	G	A	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr8	109172907	109172908	chr8:109172908:T:C	rs13280742	T	C	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr8	109252033	109252034	chr8:109252034:T:G	chr8:109252034:T:G	T	G	T	Sox3.mouse_HMG_2	2	1	+	10.261034265885762	5.107159599205871	CCTCAATGGTATTGTTC
chr8	109292334	109292335	chr8:109292335:C:G	rs111598875	C	G	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr8	109631006	109631007	chr8:109631007:G:A	rs34147744	G	A	G	Sox3.mouse_HMG_2	13	1	+	4.651434262746043	-1.4002042414402687	GTTCAATTATGTTGAAT
chr8	109848537	109848538	chr8:109848538:A:G	rs1505648	A	G	G	Sox3.mouse_HMG_2	14	1	+	1.8786852716285656	-1.4393809981430359	TGTCAGTGTTGGTGATG
chr8	110864580	110864581	chr8:110864581:G:T	rs73700751	G	T	G	Sox3.mouse_HMG_2	3	1	-	4.414123709500884	-2.486546529758026	GATCAATTTCATGGGCT
chr8	110959065	110959066	chr8:110959066:C:A	rs4637866	C	A	C	Sox3.mouse_HMG_2	16	1	+	6.058307939973708	7.0860048735149626	AGGCAATTTCAGTGATC
chr8	111326809	111326810	chr8:111326810:T:C	rs10095525	T	C	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr8	111326850	111326851	chr8:111326851:A:T	rs62520615	A	T	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr8	111469107	111469108	chr8:111469108:G:A	rs6992309	G	A	G	Sox3.mouse_HMG_2	13	1	+	2.990995380439586	-3.060643123746725	TTTGAATTCCAGTGAGT
chr8	111519161	111519162	chr8:111519162:T:C	rs12682170	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.471441407055076	-1.9178400273228131	GATTCATGGTATTGAAG
chr8	111611619	111611620	chr8:111611620:G:C	rs35171173	G	C	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr8	111772013	111772014	chr8:111772014:T:A	rs73338363	T	A	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr8	112465256	112465257	chr8:112465257:C:T	rs61000735	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr8	112888137	112888138	chr8:112888138:T:C	rs2125553	T	C	C	Sox3.mouse_HMG_2	8	1	+	4.036716600139849	2.7822946339841783	AAACAATGTCCTTGAGG
chr8	112949799	112949800	chr8:112949800:T:C	rs78664784	T	C	T	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr8	113944429	113944430	chr8:113944430:G:T	rs1418457523	G	T	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr8	115257411	115257412	chr8:115257412:T:A	rs60661746	T	A	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr8	115405965	115405966	chr8:115405966:G:A	rs231149	G	A	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr8	115949546	115949547	chr8:115949547:G:A	rs113712491	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr8	116575086	116575087	chr8:116575087:G:A	rs147658139	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr8	116575093	116575094	chr8:116575094:A:T	rs2317380	A	T	A	Sox3.mouse_HMG_2	15	1	-	2.6400490054146224	0.3366593119559376	CATCACTTCTGTTGATA
chr8	117109935	117109936	chr8:117109936:T:G	rs72687118	T	G	T	Sox3.mouse_HMG_2	12	1	+	2.8116967051622828	-3.574891967509433	CAGCATTTATAGTGATT
chr8	117447963	117447964	chr8:117447964:C:A	rs114827917	C	A	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr8	117742753	117742754	chr8:117742754:C:T	rs10094612	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr8	117782513	117782514	chr8:117782514:C:T	rs56257079	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr8	117896047	117896048	chr8:117896048:A:T	rs142610507	A	T	A	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr8	117921398	117921399	chr8:117921399:C:A	rs55712037	C	A	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr8	117957428	117957429	chr8:117957429:G:A	rs139559707	G	A	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr8	117957435	117957436	chr8:117957436:C:T	chr8:117957436:C:T	C	T	C	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr8	117987372	117987373	chr8:117987373:G:A	rs17431166	G	A	G	Sox3.mouse_HMG_2	7	1	+	2.5541701021006005	-4.074651392987455	GATCAATGGCAAGGGTT
chr8	118088199	118088200	chr8:118088200:T:A	rs76763990	T	A	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr8	118517907	118517908	chr8:118517908:C:T	rs74499227	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr8	118521577	118521578	chr8:118521578:C:A	rs9297588	C	A	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr8	118675414	118675415	chr8:118675415:A:G	rs1521151	A	G	G	Sox3.mouse_HMG_2	14	1	+	1.4263503051216586	-1.8917159646499426	GCACTATGTCAGTGAGA
chr8	118875124	118875125	chr8:118875125:G:C	rs3134096	G	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr8	119114254	119114255	chr8:119114255:T:G	rs16892081	T	G	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr8	119504648	119504649	chr8:119504649:A:C	rs10086941	A	C	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr8	119603082	119603083	chr8:119603083:C:T	rs1374100	C	T	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr8	119908739	119908740	chr8:119908740:A:G	rs7017583	A	G	A	Sox3.mouse_HMG_2	10	1	-	3.950366712517999	3.950366712517999	CCTCAATTTCTTTGTTT
chr8	120030817	120030818	chr8:120030818:C:G	rs12542032	C	G	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr8	120041186	120041187	chr8:120041187:A:G	rs7829101	A	G	A	Sox3.mouse_HMG_2	8	1	+	2.391163222922943	3.60995360766744	CTTCCATGACAGTGAGA
chr8	120266710	120266711	chr8:120266711:A:G	rs16893791	A	G	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr8	120344508	120344509	chr8:120344509:A:G	rs73706448	A	G	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr8	120566850	120566851	chr8:120566851:A:G	rs7826902	A	G	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr8	120580714	120580715	chr8:120580715:T:C	rs28415690	T	C	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr8	120750702	120750703	chr8:120750703:T:C	rs11997006	T	C	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	120809454	120809455	chr8:120809455:C:T	rs116715160	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr8	120866450	120866451	chr8:120866451:C:T	rs6651222	C	T	T	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr8	120987837	120987838	chr8:120987838:C:T	rs919849	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr8	121132755	121132756	chr8:121132756:C:T	rs1560771	C	T	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr8	121750697	121750698	chr8:121750698:A:G	rs3870374	A	G	a	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr8	121770719	121770720	chr8:121770720:A:G	rs17243536	A	G	A	Sox3.mouse_HMG_2	8	1	-	5.652790668647432	4.398368702491763	GTTCAATATCAGTGAAG
chr8	121811418	121811419	chr8:121811419:T:G	rs1371719	T	G	G	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr8	121900742	121900743	chr8:121900743:C:T	rs7464955	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr8	122746700	122746701	chr8:122746701:C:T	rs6981534	C	T	T	Sox3.mouse_HMG_2	0	1	+	10.983809683671714	10.498674669417605	CATCAATGATATTGCTG
chr8	122756836	122756837	chr8:122756837:T:C	rs4871302	T	C	T	Sox3.mouse_HMG_2	6	1	+	2.2578459236714314	-4.131435510706457	CAACAATGGCAACGATG
chr8	122957782	122957783	chr8:122957783:T:C	rs56129936	T	C	T	Sox3.mouse_HMG_2	6	1	+	5.987761845477412	-0.40151958890048006	GTTCCATGGTATTGAGA
chr8	122994720	122994721	chr8:122994721:C:T	rs149810257	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr8	123012771	123012772	chr8:123012772:T:C	rs578104600	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr8	123438123	123438124	chr8:123438124:G:T	rs3765212	G	T	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr8	123578267	123578268	chr8:123578268:T:C	rs72711207	T	C	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr8	123579731	123579732	chr8:123579732:C:T	rs17254013	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	123595469	123595470	chr8:123595470:A:G	rs28445658	A	G	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr8	123732363	123732364	chr8:123732364:C:T	rs2385506	C	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr8	123732398	123732399	chr8:123732399:T:C	rs2385507	T	C	T	Sox3.mouse_HMG_2	15	1	+	3.5662482959169997	-0.21355112158879602	TATAAATGTCAGTTATT
chr8	123732419	123732420	chr8:123732420:A:G	rs2891799	A	G	G	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr8	123777176	123777177	chr8:123777177:G:A	rs7012004	G	A	G	Sox3.mouse_HMG_2	7	1	+	4.014688617394081	-2.6141328776939754	AATCATTGTTATTGGCT
chr8	123910882	123910883	chr8:123910883:T:C	rs12548510	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.820095840326882	-1.5691855940510102	CATCAATTTCATGCATT
chr8	124142952	124142953	chr8:124142953:C:T	rs4437631	C	T	N	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr8	124142992	124142993	chr8:124142993:T:C	rs79753260	T	C	t	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr8	124153581	124153582	chr8:124153582:G:A	rs757357438	G	A	g	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr8	124306125	124306126	chr8:124306126:A:G	rs79574005	A	G	A	Sox3.mouse_HMG_2	2	1	-	3.640380970145723	-2.7265163363800187	TATTAAGTATATTGATG
chr8	124375336	124375337	chr8:124375337:G:C	rs4128778	G	C	C	Sox3.mouse_HMG_2	9	1	-	0.9372434995038015	-4.3540852175085565	CAGCCATGTCAGTGAGC
chr8	124562130	124562131	chr8:124562131:G:A	rs72714718	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr8	124690168	124690169	chr8:124690169:G:A	rs372232387	G	A	G	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr8	124690180	124690181	chr8:124690181:G:C	rs183570785	G	C	g	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr8	124783000	124783001	chr8:124783001:C:T	rs114623894	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr8	124783042	124783043	chr8:124783043:A:G	rs141685886	A	G	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr8	124896371	124896372	chr8:124896372:C:T	rs6470322	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr8	124896372	124896373	chr8:124896373:T:C	rs11783773	T	C	T	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr8	125156721	125156722	chr8:125156722:C:A	rs74493457	C	A	C	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr8	125177921	125177922	chr8:125177922:G:C	rs7461265	G	C	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	125255387	125255388	chr8:125255388:T:G	rs7008482	T	G	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	125294674	125294675	chr8:125294675:G:A	rs10101690	G	A	A	Sox3.mouse_HMG_2	0	1	+	6.222968244844783	4.526475951142122	GATGAATGTCATTTATG
chr8	125358636	125358637	chr8:125358637:T:G	rs6651237	T	G	T	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr8	125517163	125517164	chr8:125517164:G:C	rs4352874	G	C	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr8	125517170	125517171	chr8:125517171:T:C	rs4347008	T	C	C	Sox3.mouse_HMG_2	14	1	-	6.689841839959313	3.3717755701877126	GATCAATGCCAGTCAGA
chr8	125636239	125636240	chr8:125636240:A:G	rs60074719	A	G	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr8	126260596	126260597	chr8:126260597:C:T	rs11780933	C	T	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr8	126668328	126668329	chr8:126668329:A:T	rs16901632	A	T	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr8	126750254	126750255	chr8:126750255:C:A	rs75494948	C	A	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr8	126896552	126896553	chr8:126896553:T:A	rs1003273427	T	A	T	Sox3.mouse_HMG_2	7	1	+	2.1866118200650635	-3.316318461177748	GATCAAATGCATTCATC
chr8	126926970	126926971	chr8:126926971:T:C	rs10097524	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr8	127112670	127112671	chr8:127112671:C:A	rs16901979	C	A	.	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr8	127253847	127253848	chr8:127253848:C:T	rs954559696	C	T	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr8	127401732	127401733	chr8:127401733:T:C	rs7008058	T	C	C	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr8	127490337	127490338	chr8:127490338:C:T	rs7820229	C	T	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	127513022	127513023	chr8:127513023:C:A	rs7017300	C	A	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr8	127552805	127552806	chr8:127552806:T:C	rs888486899	T	C	T	Sox3.mouse_HMG_2	14	1	-	9.204113496817259	5.886047227045658	CTTCAATTTTATTTATT
chr8	127564089	127564090	chr8:127564090:G:C	rs10956374	G	C	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	127591194	127591195	chr8:127591195:C:T	rs4552863	C	T	C	Sox3.mouse_HMG_2	0	1	+	2.1848058467364355	1.699670832482327	CATCAATAGTACTGAGG
chr8	127679182	127679183	chr8:127679183:A:G	rs12548317	A	G	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr8	127918902	127918903	chr8:127918903:C:T	rs116650414	C	T	c	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr8	127967913	127967914	chr8:127967914:G:A	rs536889170	G	A	G	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr8	127981474	127981475	chr8:127981475:C:T	rs115311148	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr8	128019487	128019488	chr8:128019488:G:A	rs2033098	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr8	128033719	128033720	chr8:128033720:A:T	rs182212638	A	T	A	Sox3.mouse_HMG_2	1	1	+	4.563539880321344	1.8683163212680483	TAACAATGGCCTTGAAG
chr8	128174178	128174179	chr8:128174179:A:G	rs7825733	A	G	A	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr8	128184799	128184800	chr8:128184800:G:T	rs80272901	G	T	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr8	128376640	128376641	chr8:128376641:A:T	rs112287406	A	T	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr8	128390780	128390781	chr8:128390781:G:A	rs1516959	G	A	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr8	128430069	128430070	chr8:128430070:A:G	rs903834825	A	G	A	Sox3.mouse_HMG_2	1	1	+	1.4848970823635512	-0.5214908596559088	GATCAATGCTTTTTGTG
chr8	128554545	128554546	chr8:128554546:G:A	rs6470638	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr8	128557124	128557125	chr8:128557125:G:A	rs1561924	G	A	A	Sox3.mouse_HMG_2	9	1	-	16.830309172877204	17.52296171574916	GATCAATGGCAGTGATT
chr8	128754564	128754565	chr8:128754565:A:G	rs6470656	A	G	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr8	128939522	128939523	chr8:128939523:C:T	rs7815993	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr8	128973863	128973864	chr8:128973864:G:A	rs12546523	G	A	A	Sox3.mouse_HMG_2	3	1	-	3.7567448968406953	-1.100110978381526	CAACATTTTTATTGAGC
chr8	129001724	129001725	chr8:129001725:C:T	rs7836274	C	T	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr8	129004817	129004818	chr8:129004818:G:A	rs16903947	G	A	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr8	129241196	129241197	chr8:129241197:G:C	rs7817451	G	C	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr8	129252560	129252561	chr8:129252561:C:T	rs7814449	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr8	129303805	129303806	chr8:129303806:T:C	rs6470720	T	C	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr8	129315817	129315818	chr8:129315818:A:T	rs10111530	A	T	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr8	129370992	129370993	chr8:129370993:C:T	rs6470727	C	T	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr8	129998558	129998559	chr8:129998559:C:T	rs112271978	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	130207738	130207739	chr8:130207739:A:C	rs570487126	A	C	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr8	130247917	130247918	chr8:130247918:T:C	rs2670888	T	C	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr8	130350994	130350995	chr8:130350995:G:A	rs2791354	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr8	130549869	130549870	chr8:130549870:A:T	rs4276705	A	T	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr8	130823672	130823673	chr8:130823673:C:T	rs263262	C	T	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr8	132390471	132390472	chr8:132390472:A:G	rs2673589	A	G	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr8	132453911	132453912	chr8:132453912:C:T	rs907878917	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr8	132456118	132456119	chr8:132456119:G:A	rs11985130	G	A	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr8	132954098	132954099	chr8:132954099:C:G	rs879811	C	G	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr8	132954102	132954103	chr8:132954103:A:C	rs9643296	A	C	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr8	133173654	133173655	chr8:133173655:A:T	rs13252626	A	T	A	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr8	133173671	133173672	chr8:133173672:G:C	rs4736639	G	C	G	Sox3.mouse_HMG_2	18	0	-	0	0	.
chr8	133177014	133177015	chr8:133177015:T:C	rs58244346	T	C	T	Sox3.mouse_HMG_2	5	1	-	3.832078056031684	-2.5572033783462067	CACCAATTATATTGGGT
chr8	133203267	133203268	chr8:133203268:C:T	rs145447010	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr8	133259085	133259086	chr8:133259086:C:A	rs2233329	C	A	C	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr8	133355344	133355345	chr8:133355345:G:A	rs2976546	G	A	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr8	133462349	133462350	chr8:133462350:G:A	rs2736870	G	A	G	Sox3.mouse_HMG_2	0	1	+	2.710700015565338	1.0142077218626766	GGACACTGTCAGTGAGT
chr8	133579537	133579538	chr8:133579538:T:C	rs73363005	T	C	T	Sox3.mouse_HMG_2	8	1	-	3.9471533729009978	5.165943757645494	AGACAGTGATATTGATG
chr8	133622105	133622106	chr8:133622106:G:A	rs13280177	G	A	g	Sox3.mouse_HMG_2	0	1	-	2.6289620722239952	2.1438270579698866	CGTGATTTTCATTGATT
chr8	133655419	133655420	chr8:133655420:G:C	rs10097033	G	C	G	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr8	133674830	133674831	chr8:133674831:G:T	rs79850773	G	T	G	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr8	133674860	133674861	chr8:133674861:G:A	rs115000355	G	A	g	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr8	133698427	133698428	chr8:133698428:C:T	rs2958796	C	T	C	Sox3.mouse_HMG_2	3	1	+	2.5187518360476067	-2.338104039174615	CATCGATTCCAGAGATT
chr8	133845788	133845789	chr8:133845789:G:A	rs7832591	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr8	134078096	134078097	chr8:134078097:T:C	rs7842219	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.923860144830507	-1.4654212895473824	CTACAATGTTCTTGATC
chr8	134228551	134228552	chr8:134228552:C:A	rs57909274	C	A	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr8	134256935	134256936	chr8:134256936:T:C	rs1867947	T	C	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr8	134256954	134256955	chr8:134256955:C:T	rs1867948	C	T	T	Sox3.mouse_HMG_2	11	1	-	3.284018281061045	-1.287465847272241	GATCAATGCCTGTGGAA
chr8	134291974	134291975	chr8:134291975:C:T	rs4243509	C	T	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr8	134291993	134291994	chr8:134291994:G:A	rs78154670	G	A	G	Sox3.mouse_HMG_2	9	1	+	3.7340541385969503	3.7340541385969503	CAACAATTTGAGTGAAC
chr8	134522462	134522463	chr8:134522463:C:T	rs10283274	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr8	134546057	134546058	chr8:134546058:T:C	rs1530318	T	C	T	Sox3.mouse_HMG_2	13	1	-	4.601458738425406	10.65309724261172	CGTCAGTGTTATTAATG
chr8	134757645	134757646	chr8:134757646:A:G	rs67047054	A	G	a	Sox3.mouse_HMG_2	14	1	-	5.824900108171754	3.811753014331754	CCTCAATTCCATTGTCT
chr8	134757669	134757670	chr8:134757670:G:A	rs111593990	G	A	g	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr8	134777779	134777780	chr8:134777780:G:A	rs77039133	G	A	g	Sox3.mouse_HMG_2	3	1	-	3.3218537507661363	-1.5350021244560859	AGACAATGTCATAGAAG
chr8	134895757	134895758	chr8:134895758:G:C	rs71528377	G	C	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr8	135605776	135605777	chr8:135605777:A:G	rs58969006	A	G	A	Sox3.mouse_HMG_2	5	1	+	5.7134689615642165	-0.6758124728136732	TGTCAACTGTATTGAAA
chr8	135646951	135646952	chr8:135646952:C:T	rs28621864	C	T	C	Sox3.mouse_HMG_2	4	1	+	3.462385020201471	3.462385020201471	GATTCATGGCAGTGATC
chr8	135731300	135731301	chr8:135731301:G:A	rs7832101	G	A	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr8	136026717	136026718	chr8:136026718:T:C	chr8:136026718:T:C	T	C	T	Sox3.mouse_HMG_2	8	1	+	3.8392508342341922	2.5848288680785223	TGTCACTTTCATTGACA
chr8	136040980	136040981	chr8:136040981:G:A	rs2317349	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr8	136143332	136143333	chr8:136143333:G:A	rs4909572	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr8	136714233	136714234	chr8:136714234:C:T	rs146191973	C	T	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr8	137123692	137123693	chr8:137123693:A:G	rs7827430	A	G	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr8	137150967	137150968	chr8:137150968:A:G	rs7009688	A	G	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr8	137231480	137231481	chr8:137231481:A:G	rs61150783	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.110085548381121	-2.279195885996768	CGTCAATGTTTTTTATT
chr8	137459925	137459926	chr8:137459926:A:T	rs1399172	A	T	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr8	137603388	137603389	chr8:137603389:A:G	rs4489355	A	G	G	Sox3.mouse_HMG_2	10	1	+	5.636786537438187	-1.2719682418770342	TATCAATGCTATAGGAG
chr8	138171608	138171609	chr8:138171609:A:T	rs10103726	A	T	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr8	138176554	138176555	chr8:138176555:G:A	rs4430137	G	A	G	Sox3.mouse_HMG_2	1	1	+	2.7371642469945163	4.743552189013973	CGTGAATGTCATTGTAC
chr8	138177258	138177259	chr8:138177259:T:A	rs6985633	T	A	A	Sox3.mouse_HMG_2	6	1	+	2.0432783606707368	-4.864796867122318	CTTCACTTCCAGTGAGA
chr8	138196569	138196570	chr8:138196570:T:C	rs4909749	T	C	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr8	138415790	138415791	chr8:138415791:G:T	rs35925122	G	T	G	Sox3.mouse_HMG_2	3	1	-	2.9329775427772167	-3.967692696481689	TGTCACTGTCATTCATT
chr8	138728965	138728966	chr8:138728966:C:T	rs10101051	C	T	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr8	139096465	139096466	chr8:139096466:A:G	rs78193702	A	G	A	Sox3.mouse_HMG_2	11	1	-	2.8352324536927163	-3.8491417457676196	CAACAAGGATATTGACA
chr8	139096478	139096479	chr8:139096479:T:C	rs79705081	T	C	c	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr8	139097280	139097281	chr8:139097281:C:T	rs2202559	C	T	T	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr8	139268336	139268337	chr8:139268337:T:G	rs62520253	T	G	T	Sox3.mouse_HMG_2	2	1	-	3.175926845694544	0.09068631495233576	ACACAAATGTATTGATT
chr8	139641032	139641033	chr8:139641033:G:C	rs874747	G	C	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr8	139798510	139798511	chr8:139798511:C:T	rs72683235	C	T	T	Sox3.mouse_HMG_2	15	1	+	0.9878803093762958	4.767679726882092	GAGCAATGGCTGTGACT
chr8	140031743	140031744	chr8:140031744:A:G	rs10216700	A	G	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr8	140051699	140051700	chr8:140051700:A:G	rs4374967	A	G	A	Sox3.mouse_HMG_2	6	1	-	4.363389817155314	-2.0258916172225745	TATCAATGTCCTTTATA
chr8	140087092	140087093	chr8:140087093:T:G	rs151323740	T	G	T	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr8	140209111	140209112	chr8:140209112:C:T	rs12717828	C	T	C	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr8	140327859	140327860	chr8:140327860:T:C	rs372133407	T	C	T	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr8	140327871	140327872	chr8:140327872:A:C	rs375160681	A	C	A	Sox3.mouse_HMG_2	11	1	-	5.385359461309112	4.004837283895288	ATTCAGTGGTATTGAGT
chr8	140507167	140507168	chr8:140507168:G:C	rs145498786	G	C	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr8	140577304	140577305	chr8:140577305:C:T	rs9694342	C	T	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr8	140629528	140629529	chr8:140629529:G:A	rs7004365	G	A	G	Sox3.mouse_HMG_2	4	1	+	2.4046040247933584	8.793885459171248	TCTCGATGACAGTGAGA
chr8	140645925	140645926	chr8:140645926:G:C	chr8:140645926:G:C	G	C	G	Sox3.mouse_HMG_2	1	1	+	2.7647427046057205	2.0556891102812376	TGTGAATGTCAGTGCTT
chr8	140645925	140645926	chr8:140645926:G:T	rs10091420	G	T	G	Sox3.mouse_HMG_2	1	1	+	2.7647427046057205	2.075907087571882	TGTGAATGTCAGTGCTT
chr8	140686821	140686822	chr8:140686822:G:A	rs115120329	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr8	140686845	140686846	chr8:140686846:T:C	rs73714729	T	C	T	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	140882790	140882791	chr8:140882791:C:G	rs150407606	C	G	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr8	140926239	140926240	chr8:140926240:T:C	rs148743935	T	C	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr8	141030309	141030310	chr8:141030310:A:T	rs35807050	A	T	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr8	141129805	141129806	chr8:141129806:C:G	chr8:141129806:C:G	C	G	C	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr8	141129815	141129816	chr8:141129816:C:G	rs150735355	C	G	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr8	141341228	141341229	chr8:141341229:G:A	rs4961363	G	A	G	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr8	141930693	141930694	chr8:141930694:G:A	rs114903020	G	A	G	Sox3.mouse_HMG_2	8	1	-	10.602394258264303	11.856816224419973	TCTCAATGCTATTGACA
chr8	142059052	142059053	chr8:142059053:G:A	rs183835912	G	A	G	Sox3.mouse_HMG_2	13	1	-	3.903134599013837	3.903134599013837	CAACAATGCCATTCGTA
chr8	142231142	142231143	chr8:142231143:C:T	rs56031226	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr8	142239355	142239356	chr8:142239356:T:C	rs7465677	T	C	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr8	142243105	142243106	chr8:142243106:G:A	rs6583608	G	A	G	Sox3.mouse_HMG_2	7	1	+	8.326996035084186	1.698174539996127	GATCAATGTTGGTGAGG
chr8	142394752	142394753	chr8:142394753:A:G	rs28433910	A	G	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr8	142905774	142905775	chr8:142905775:G:A	rs6987382	G	A	G	Sox3.mouse_HMG_2	16	1	-	5.96104411045575	7.5640371601162	GGCCAATGTTATTGACC
chr8	142905801	142905802	chr8:142905802:T:A	rs4736357	T	A	A	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr8	143059195	143059196	chr8:143059196:A:G	rs6991866	A	G	G	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr8	143059200	143059201	chr8:143059201:G:C	rs7005116	G	C	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr8	143126498	143126499	chr8:143126499:G:A	rs55918250	G	A	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr8	143467325	143467326	chr8:143467326:A:G	rs188342475	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr8	143467353	143467354	chr8:143467354:G:A	rs141299726	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr8	143967774	143967775	chr8:143967775:T:C	rs112641794	T	C	T	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr8	144554421	144554422	chr8:144554422:A:C	rs112396175	A	C	C	Sox3.mouse_HMG_2	5	1	+	3.5074974019805043	-3.400577825812553	GGATAATGCCAGTGAGT
chr8	144924000	144924001	chr8:144924001:T:C	rs3879821	T	C	c	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr9	257972	257973	chr9:257973:A:G	rs492887	A	G	G	Sox3.mouse_HMG_2	0	1	-	1.9730663933450618	2.4582014075991703	TCTCTATTGCAGTGGTT
chr9	257984	257985	chr9:257985:A:G	rs492934	A	G	G	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr9	326766	326767	chr9:326767:C:T	rs1556022	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr9	344689	344690	chr9:344690:T:C	rs7873573	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr9	352205	352206	chr9:352206:T:C	rs77017153	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr9	352219	352220	chr9:352220:C:T	rs76973882	C	T	C	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr9	474204	474205	chr9:474205:A:G	rs7867795	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr9	474238	474239	chr9:474239:G:A	rs7850568	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr9	479586	479587	chr9:479587:G:C	rs10815059	G	C	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr9	534257	534258	chr9:534258:G:C	rs7031554	G	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr9	757777	757778	chr9:757778:C:A	rs77946290	C	A	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr9	757781	757782	chr9:757782:G:A	rs10976315	G	A	G	Sox3.mouse_HMG_2	0	1	+	4.651891139119222	2.955398845416561	GTTTAATTTTATTTATT
chr9	887018	887019	chr9:887019:A:G	rs10815945	A	G	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr9	890362	890363	chr9:890363:C:A	rs923919158	C	A	C	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr9	911222	911223	chr9:911223:A:C	rs115247949	A	C	A	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr9	1216634	1216635	chr9:1216635:C:T	rs3920797	C	T	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr9	1415078	1415079	chr9:1415079:A:C	rs148179666	A	C	A	Sox3.mouse_HMG_2	2	1	-	2.565857351498118	-2.588017315181773	GATCATTGTGAGTGAAA
chr9	1459662	1459663	chr9:1459663:T:C	rs10114417	T	C	T	Sox3.mouse_HMG_2	5	1	-	7.775631997903437	1.3863505635255462	CAACAATGATATTGTAT
chr9	1940291	1940292	chr9:1940292:G:C	rs779722467	G	C	g	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr9	1940320	1940321	chr9:1940321:T:C	rs139438220	T	C	t	Sox3.mouse_HMG_2	5	1	-	9.18558820845055	2.79630677407266	CATCAATTGAATTGAAT
chr9	2121620	2121621	chr9:2121621:G:A	rs10738583	G	A	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr9	2228076	2228077	chr9:2228077:A:G	rs7350291	A	G	A	Sox3.mouse_HMG_2	10	1	+	2.7378994048254626	-4.170855374489759	GTCCAATGTCATTGGAC
chr9	2228088	2228089	chr9:2228089:C:T	rs62528850	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr9	2234211	2234212	chr9:2234212:A:C	rs189533736	A	C	A	Sox3.mouse_HMG_2	8	1	-	4.265401386383821	3.451763453379608	TTTTAATTTAATTGATT
chr9	2271168	2271169	chr9:2271169:A:G	rs12342290	A	G	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr9	2419537	2419538	chr9:2419538:G:A	rs872039	G	A	A	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr9	2526148	2526149	chr9:2526149:G:C	rs2183736	G	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr9	2693228	2693229	chr9:2693229:C:T	rs77210048	C	T	T	Sox3.mouse_HMG_2	11	1	-	2.492022148249752	-2.0794619800835332	GAACAGTTTCAGTGACA
chr9	3012275	3012276	chr9:3012276:G:A	rs7031274	G	A	A	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr9	3100070	3100071	chr9:3100071:T:C	rs4364680	T	C	T	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr9	3687120	3687121	chr9:3687121:C:T	rs7862355	C	T	C	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr9	3719383	3719384	chr9:3719384:A:G	rs1819447	A	G	G	Sox3.mouse_HMG_2	16	1	-	1.6522229117115286	0.0492298620510776	GATCAATGATGTGGAGT
chr9	3732525	3732526	chr9:3732526:A:G	rs137896801	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.295201887444615	-3.38917231201572	GAACAGTGTTATTCATG
chr9	3732529	3732530	chr9:3732530:C:G	rs7033145	C	G	C	Sox3.mouse_HMG_2	7	1	-	3.295201887444615	-3.3336196076434415	GAACAGTGTTATTCATG
chr9	3733598	3733599	chr9:3733599:G:C	rs4741848	G	C	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr9	3733603	3733604	chr9:3733604:T:C	rs10973264	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr9	3830453	3830454	chr9:3830454:G:A	rs186684793	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr9	3859603	3859604	chr9:3859604:C:T	rs16919799	C	T	T	Sox3.mouse_HMG_2	8	1	-	5.1247394563416	3.9059490715971035	GATGAATGGGAGTGATG
chr9	3894814	3894815	chr9:3894815:C:G	rs10974061	C	G	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr9	4005057	4005058	chr9:4005058:G:T	rs146737590	G	T	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr9	4029655	4029656	chr9:4029656:G:A	rs35980996	G	A	G	Sox3.mouse_HMG_2	0	1	+	15.062151142973802	13.365658849271139	GCTCAATTGTATTGATT
chr9	4096379	4096380	chr9:4096380:T:C	rs1770393	T	C	T	Sox3.mouse_HMG_2	12	1	+	4.268451869637385	-1.7825152682934318	GGTCATTTGTATTGTTA
chr9	4096384	4096385	chr9:4096385:A:T	rs1742805	A	T	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr9	4126888	4126889	chr9:4126889:T:A	rs806048	T	A	T	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr9	4225720	4225721	chr9:4225721:T:C	rs16920940	T	C	T	Sox3.mouse_HMG_2	11	1	-	3.349020361584148	7.920504489917434	TAGCAATGTCAATGACT
chr9	4226629	4226630	chr9:4226630:C:T	rs10814891	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr9	4226642	4226643	chr9:4226643:T:C	rs10814892	T	C	T	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr9	4596513	4596514	chr9:4596514:T:C	rs376335462	T	C	T	Sox3.mouse_HMG_2	8	1	+	3.9290393499588085	2.6746173838031386	TTCCAATTTCAGTGAGT
chr9	4644977	4644978	chr9:4644978:T:A	rs418122	T	A	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr9	4644978	4644979	chr9:4644979:T:C	rs364802	T	C	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr9	4788009	4788010	chr9:4788010:C:G	rs34561525	C	G	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr9	4788042	4788043	chr9:4788043:A:T	rs34133396	A	T	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr9	4932652	4932653	chr9:4932653:T:G	rs7034721	T	G	G	Sox3.mouse_HMG_2	14	1	-	4.414805764323842	-1.6177228532648027	CATGGATGGTAGTGATG
chr9	5389418	5389419	chr9:5389419:G:A	rs111832850	G	A	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr9	5461413	5461414	chr9:5461414:G:T	rs75851586	G	T	G	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr9	5515206	5515207	chr9:5515207:A:C	rs59898184	A	C	C	Sox3.mouse_HMG_2	8	1	-	3.696869418670663	2.8832314856664505	TCTTAATGTTATTGGGC
chr9	5742084	5742085	chr9:5742085:C:T	rs4742120	C	T	C	Sox3.mouse_HMG_2	11	1	-	2.5416758105040818	-2.0298083178292035	CATCAGTGGAAGTGAAT
chr9	5976854	5976855	chr9:5976855:A:G	rs10975382	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr9	6134047	6134048	chr9:6134048:G:C	rs2026992	G	C	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr9	6283835	6283836	chr9:6283836:C:A	rs10815401	C	A	a	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr9	6433669	6433670	chr9:6433670:G:C	rs186881839	G	C	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr9	6682703	6682704	chr9:6682704:C:A	rs28405929	C	A	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	6835418	6835419	chr9:6835419:C:T	rs7030531	C	T	C	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr9	6869286	6869287	chr9:6869287:C:G	rs371086531	C	G	C	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr9	6963468	6963469	chr9:6963469:G:T	rs4537355	G	T	G	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr9	6988418	6988419	chr9:6988419:T:C	rs2760648	T	C	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr9	6988438	6988439	chr9:6988439:T:C	rs2760649	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.301222955818117	-1.3831512436422186	CAACATTGCTATTGAAG
chr9	7022909	7022910	chr9:7022910:G:A	rs10975984	G	A	G	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr9	7072097	7072098	chr9:7072098:A:G	rs4740870	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr9	7076462	7076463	chr9:7076463:G:A	rs1570512	G	A	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr9	7121028	7121029	chr9:7121029:C:G	rs10976048	C	G	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr9	7283983	7283984	chr9:7283984:A:G	rs2820935	A	G	A	Sox3.mouse_HMG_2	0	1	-	3.3305151884103967	3.8156502026645054	TGACAATGCTATTCAAG
chr9	7358782	7358783	chr9:7358783:C:G	rs4742335	C	G	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	7507189	7507190	chr9:7507190:G:T	rs12340314	G	T	G	Sox3.mouse_HMG_2	11	1	-	3.177828553485047	3.910196447198273	CTGCAATTTTACTGATA
chr9	7570332	7570333	chr9:7570333:G:A	rs78421155	G	A	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr9	7570348	7570349	chr9:7570349:A:G	rs75229316	A	G	A	Sox3.mouse_HMG_2	6	1	-	3.8700468422243377	-2.519234592153552	AGTCAATGTCAGTATTT
chr9	7578593	7578594	chr9:7578594:C:T	rs13290529	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr9	8115875	8115876	chr9:8115876:G:A	rs10815762	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr9	8232697	8232698	chr9:8232698:T:G	rs10815797	T	G	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr9	8264660	8264661	chr9:8264661:C:T	rs10976895	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr9	8284954	8284955	chr9:8284955:G:A	rs7872167	G	A	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr9	8284964	8284965	chr9:8284965:G:T	rs7872172	G	T	T	Sox3.mouse_HMG_2	13	1	-	3.973081435598364	4.308702970339264	AAGCAATTTTAGTCATT
chr9	8349521	8349522	chr9:8349522:T:A	rs186660828	T	A	T	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr9	8377234	8377235	chr9:8377235:G:A	rs1500324	G	A	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr9	8695438	8695439	chr9:8695439:A:C	rs12685924	A	C	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr9	8695997	8695998	chr9:8695998:A:G	rs1368982	A	G	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr9	8718398	8718399	chr9:8718399:T:C	rs78996106	T	C	T	Sox3.mouse_HMG_2	5	1	-	6.0033236317571035	-0.38595780262078355	TTTCAATTGTTGTGATT
chr9	8777670	8777671	chr9:8777671:A:G	rs10116829	A	G	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr9	8851129	8851130	chr9:8851130:T:C	rs185992145	T	C	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr9	8895410	8895411	chr9:8895411:G:C	rs72704370	G	C	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr9	8956813	8956814	chr9:8956814:A:T	rs12236876	A	T	A	Sox3.mouse_HMG_2	10	1	+	1.4990271720174293	-5.409727607297791	CATCTATCTCAGTGAAT
chr9	8980953	8980954	chr9:8980954:G:A	rs77755870	G	A	G	Sox3.mouse_HMG_2	9	1	-	3.8658529532886097	4.558505496160567	TGTCAATGTCAGTTTTA
chr9	9044830	9044831	chr9:9044831:G:A	rs72694907	G	A	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr9	9425189	9425190	chr9:9425190:T:C	rs4742599	T	C	C	Sox3.mouse_HMG_2	6	1	+	4.258291508902092	-2.130989925475798	CATCCATTTTATTGTGG
chr9	9425197	9425198	chr9:9425198:T:A	rs4742600	T	A	A	Sox3.mouse_HMG_2	14	1	+	4.258291508902092	8.277673032650739	CATCCATTTTATTGTGG
chr9	9537064	9537065	chr9:9537065:T:C	rs16929670	T	C	C	Sox3.mouse_HMG_2	0	1	-	2.351412237563321	4.047904531265983	AAGCAGTGGTATTGAGA
chr9	9726250	9726251	chr9:9726251:A:C	rs7048068	A	C	A	Sox3.mouse_HMG_2	14	1	-	3.8862156856900767	4.58753093966712	TGCCAATGTCAGTGTTA
chr9	9912826	9912827	chr9:9912827:A:C	rs10816229	A	C	A	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr9	9919287	9919288	chr9:9919288:G:C	rs10978087	G	C	g	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr9	9951279	9951280	chr9:9951280:G:A	rs73643834	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr9	10174316	10174317	chr9:10174317:C:T	rs35968521	C	T	T	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr9	10232976	10232977	chr9:10232977:C:G	rs1322140	C	G	G	Sox3.mouse_HMG_2	11	1	-	4.542933436429181	-0.7609185856173298	GTTGAATGCCAGTGAGG
chr9	10538374	10538375	chr9:10538375:T:A	rs10156436	T	A	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr9	10583826	10583827	chr9:10583827:G:A	rs78588749	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr9	10843307	10843308	chr9:10843308:G:T	rs10756139	G	T	G	Sox3.mouse_HMG_2	-14	0	-	0	0	.
chr9	11097561	11097562	chr9:11097562:T:C	rs2382262	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	11103596	11103597	chr9:11103597:G:A	rs113655831	G	A	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr9	11962622	11962623	chr9:11962623:T:A	rs73646822	T	A	t	Sox3.mouse_HMG_2	5	1	-	2.599360803918948	-4.308714423874108	AACCAATGTTATTCAAG
chr9	12035754	12035755	chr9:12035755:C:G	rs12684064	C	G	C	Sox3.mouse_HMG_2	15	1	-	5.6239208100135025	4.581248537227733	AGTCAATTTTAATGAGA
chr9	12274757	12274758	chr9:12274758:C:A	rs537325334	C	A	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr9	12274773	12274774	chr9:12274774:T:C	rs12555009	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.280563093751928	-2.1087183406259618	TCTCAATGCAAGTGAGA
chr9	12274794	12274795	chr9:12274795:C:T	rs142335293	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr9	12319299	12319300	chr9:12319300:G:A	rs10960592	G	A	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr9	12599560	12599561	chr9:12599561:C:T	rs13283146	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr9	12681640	12681641	chr9:12681641:G:C	rs10738288	G	C	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr9	12717405	12717406	chr9:12717406:G:A	rs12379024	G	A	G	Sox3.mouse_HMG_2	16	1	-	6.40488665276967	8.00787970243012	TATCAATGTCTTTGGTC
chr9	12735666	12735667	chr9:12735667:G:T	rs7047704	G	T	G	Sox3.mouse_HMG_2	0	1	+	2.761800277442334	1.972031745664039	GCTCAAAGTTATTGTGA
chr9	12777862	12777863	chr9:12777863:G:A	rs10960792	G	A	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr9	12777909	12777910	chr9:12777910:T:C	rs10809841	T	C	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr9	12794833	12794834	chr9:12794834:G:A	rs1887174	G	A	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr9	12972997	12972998	chr9:12972998:C:T	rs113193298	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr9	13451243	13451244	chr9:13451244:A:G	rs2184230	A	G	G	Sox3.mouse_HMG_2	2	1	-	5.370615872399336	-0.9962814341264092	TGTCAATTTCAATGACT
chr9	13975374	13975375	chr9:13975375:C:T	rs11793194	C	T	C	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr9	14022404	14022405	chr9:14022405:G:T	rs10810078	G	T	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr9	14030755	14030756	chr9:14030756:G:A	rs1478925766	G	A	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr9	14030807	14030808	chr9:14030808:G:C	chr9:14030808:G:C	G	C	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr9	14054192	14054193	chr9:14054193:A:T	rs142471607	A	T	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr9	14064502	14064503	chr9:14064503:G:T	rs513997	G	T	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr9	14102939	14102940	chr9:14102940:C:T	rs497789	C	T	T	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr9	14111643	14111644	chr9:14111644:C:T	rs190468372	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr9	14111649	14111650	chr9:14111650:G:A	rs929587730	G	A	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr9	14402629	14402630	chr9:14402630:C:T	rs74725663	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr9	14620926	14620927	chr9:14620927:G:C	rs1343572	G	C	C	Sox3.mouse_HMG_2	8	1	+	5.072844809430942	4.632060776279486	TGACAATTGTATTAATA
chr9	14620940	14620941	chr9:14620941:C:T	rs79169870	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr9	14814668	14814669	chr9:14814669:T:C	rs147801323	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr9	14818798	14818799	chr9:14818799:G:T	rs7019481	G	T	G	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr9	15176943	15176944	chr9:15176944:G:A	rs76724127	G	A	G	Sox3.mouse_HMG_2	16	1	+	8.372843308673037	8.161268882187786	CATCAATGCTACTGAGG
chr9	15293428	15293429	chr9:15293429:G:A	rs2185938	G	A	A	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr9	15525196	15525197	chr9:15525197:C:G	rs1828382	C	G	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr9	15927796	15927797	chr9:15927797:C:T	rs1410446	C	T	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr9	15927797	15927798	chr9:15927798:G:A	rs79387099	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr9	15966437	15966438	chr9:15966438:G:T	rs2987011	G	T	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr9	16003090	16003091	chr9:16003091:C:A	rs73413991	C	A	C	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr9	16058547	16058548	chr9:16058548:G:A	rs76372267	G	A	G	Sox3.mouse_HMG_2	14	1	+	4.877681902553412	8.195748172325015	AATGAATTTCAGTGGTA
chr9	16098364	16098365	chr9:16098365:A:G	rs75443270	A	G	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr9	16257740	16257741	chr9:16257741:A:G	rs78112129	A	G	A	Sox3.mouse_HMG_2	11	1	-	6.566646024292637	-0.11772817516769868	GGTAAATGGCATTGAGT
chr9	16336473	16336474	chr9:16336474:A:T	rs66838939	A	T	T	Sox3.mouse_HMG_2	9	1	-	3.346089890802873	-2.637891369081446	ATTCAATAATATTGGTT
chr9	16357577	16357578	chr9:16357578:T:C	rs7028338	T	C	T	Sox3.mouse_HMG_2	4	1	-	2.9563509432328052	-3.4329304911450844	GCACAATGTCATTATTT
chr9	16515298	16515299	chr9:16515299:G:A	rs76982071	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr9	16795784	16795785	chr9:16795785:C:T	rs10962600	C	T	C	Sox3.mouse_HMG_2	14	1	-	4.1884104635457176	7.506476733317319	TGTCATTTTTAGTGGTT
chr9	16795791	16795792	chr9:16795792:A:C	rs16935073	A	C	A	Sox3.mouse_HMG_2	7	1	-	4.1884104635457176	5.3143016773909615	TGTCATTTTTAGTGGTT
chr9	16901950	16901951	chr9:16901951:T:C	rs35619477	T	C	C	Sox3.mouse_HMG_2	8	1	-	5.669417801762375	6.888208186506873	GATTAATTATATTGCTT
chr9	17063704	17063705	chr9:17063705:T:C	rs366565	T	C	T	Sox3.mouse_HMG_2	10	1	-	5.2501420877398015	-1.658612691575418	TCTCAGTGCTATTGGTT
chr9	17063705	17063706	chr9:17063706:A:G	rs190835280	A	G	A	Sox3.mouse_HMG_2	9	1	-	5.2501420877398015	4.557489544867844	TCTCAGTGCTATTGGTT
chr9	17578467	17578468	chr9:17578468:C:T	rs147382180	C	T	C	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr9	17578503	17578504	chr9:17578504:C:T	rs3758217	C	T	T	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr9	17674873	17674874	chr9:17674874:G:A	rs4418424	G	A	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr9	17674920	17674921	chr9:17674921:G:C	rs4601434	G	C	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr9	17810447	17810448	chr9:17810448:A:G	rs142247745	A	G	A	Sox3.mouse_HMG_2	14	1	+	4.7967296808357665	1.4786634110641654	TCACAGTGTTAGTGATG
chr9	17829897	17829898	chr9:17829898:A:G	rs6475175	A	G	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr9	17963941	17963942	chr9:17963942:G:A	rs1329914	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr9	18115482	18115483	chr9:18115483:A:T	rs117285455	A	T	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr9	18142396	18142397	chr9:18142397:G:A	rs79811056	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr9	18296815	18296816	chr9:18296816:C:T	rs192566528	C	T	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr9	18359015	18359016	chr9:18359016:A:C	rs9407897	A	C	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr9	18428942	18428943	chr9:18428943:G:A	rs145690887	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr9	18579757	18579758	chr9:18579758:T:C	rs116724075	T	C	T	Sox3.mouse_HMG_2	12	1	+	0.7107690238324043	-5.3401981140984125	GATCCAGGGCAGTGAAT
chr9	18632109	18632110	chr9:18632110:A:G	rs10481564	A	G	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr9	18739844	18739845	chr9:18739845:C:T	rs2482970	C	T	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr9	18921538	18921539	chr9:18921539:T:C	rs10963841	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	18926609	18926610	chr9:18926610:A:C	rs4977465	A	C	A	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr9	19138298	19138299	chr9:19138299:G:T	rs4977498	G	T	g	Sox3.mouse_HMG_2	11	1	+	3.304100343942376	4.684622521356201	TATCAATTACAGTAAGC
chr9	19229291	19229292	chr9:19229292:T:C	rs186624688	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr9	19269668	19269669	chr9:19269669:A:C	rs185582748	A	C	-	Sox3.mouse_HMG_2	5	1	+	4.508081488602738	-2.39999373919032	CTTGAATTTCATTGAGC
chr9	19492974	19492975	chr9:19492975:A:G	rs10117909	A	G	A	Sox3.mouse_HMG_2	10	1	+	5.440989695312779	-1.4677650840024399	CATGAATGGCATAGATG
chr9	19867615	19867616	chr9:19867616:A:C	rs10964321	A	C	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr9	20084265	20084266	chr9:20084266:G:A	rs4977384	G	A	a	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr9	20209702	20209703	chr9:20209703:T:C	rs17260469	T	C	T	Sox3.mouse_HMG_2	14	1	-	3.0373485669948423	-0.28071770277675917	TATCAAAGTCTGTGATT
chr9	20209724	20209725	chr9:20209725:G:A	rs415026	G	A	G	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr9	20220401	20220402	chr9:20220402:C:T	rs10964478	C	T	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr9	20220402	20220403	chr9:20220403:C:T	rs10465019	C	T	C	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr9	20284947	20284948	chr9:20284948:T:A	rs10811341	T	A	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr9	20321212	20321213	chr9:20321213:C:T	rs1034585	C	T	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr9	20561505	20561506	chr9:20561506:C:T	rs6475461	C	T	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr9	20756376	20756377	chr9:20756377:A:G	rs146091577	A	G	A	Sox3.mouse_HMG_2	10	1	+	2.59418828786002	-4.314566491455199	TTTCAATGTGATAGATC
chr9	21443706	21443707	chr9:21443707:T:C	rs60371901	T	C	T	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr9	21553004	21553005	chr9:21553005:T:C	rs1983811	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr9	21581721	21581722	chr9:21581722:T:C	chr9:21581722:T:C	T	C	t	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr9	21642590	21642591	chr9:21642591:A:G	rs10757229	A	G	-	Sox3.mouse_HMG_2	16	1	-	5.784469504374602	4.181476454714152	ATTCAATTGCTTTGATT
chr9	21782164	21782165	chr9:21782165:G:A	rs10811615	G	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr9	22229217	22229218	chr9:22229218:C:G	rs527401840	C	G	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr9	22229223	22229224	chr9:22229224:C:T	rs79084604	C	T	C	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr9	22990144	22990145	chr9:22990145:C:T	rs2126637	C	T	T	Sox3.mouse_HMG_2	13	1	-	4.397141836847711	-1.6544966673386012	CAAAAATGGTATTGTTT
chr9	23163049	23163050	chr9:23163050:A:G	rs1114420	A	G	A	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr9	23197976	23197977	chr9:23197977:T:C	rs10738653	T	C	T	Sox3.mouse_HMG_2	12	1	-	7.5902962630761195	7.254674728335219	TATCAATGGCATAGACT
chr9	23377824	23377825	chr9:23377825:G:T	rs10757427	G	T	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	23471508	23471509	chr9:23471509:T:C	chr9:23471509:T:C	T	C	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr9	23471509	23471510	chr9:23471510:T:G	chr9:23471510:T:G	T	G	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr9	24460949	24460950	chr9:24460950:A:G	rs16908392	A	G	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr9	25189608	25189609	chr9:25189609:G:A	rs7865045	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr9	25189614	25189615	chr9:25189615:T:C	rs9406855	T	C	C	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr9	25393679	25393680	chr9:25393680:C:G	rs10757524	C	G	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr9	25415714	25415715	chr9:25415715:A:C	rs12377312	A	C	A	Sox3.mouse_HMG_2	15	1	-	3.595884158566306	0.8587570138462806	CATTAATGCTATTTGTT
chr9	25564465	25564466	chr9:25564466:C:T	rs13295475	C	T	C	Sox3.mouse_HMG_2	14	1	-	3.348176263739029	6.66624253351063	CAACAATGATAGTAGTT
chr9	25576546	25576547	chr9:25576547:C:A	rs10757554	C	A	C	Sox3.mouse_HMG_2	13	1	-	7.47752259259396	1.0902625536667485	GGTTAATTCCATTGAAT
chr9	25602722	25602723	chr9:25602723:C:G	rs1986439	C	G	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr9	26265535	26265536	chr9:26265536:G:C	rs10967280	G	C	G	Sox3.mouse_HMG_2	15	1	+	3.3339773917880096	2.2913051190022395	CTACAATGTGAGTGAGT
chr9	26439302	26439303	chr9:26439303:C:G	rs118116921	C	G	C	Sox3.mouse_HMG_2	9	1	+	2.8239966450589757	-2.467332071953384	CATCAAAGTCACTGAAT
chr9	26565914	26565915	chr9:26565915:A:C	rs1887221	A	C	A	Sox3.mouse_HMG_2	16	1	-	2.863392082151682	2.499670392517736	AAGCAATGTGATTGTTT
chr9	26775731	26775732	chr9:26775732:T:C	rs57209791	T	C	T	Sox3.mouse_HMG_2	2	1	+	2.795088503410322	-3.5718088031154216	TATAAATTTCAGTGCTT
chr9	26892520	26892521	chr9:26892521:G:C	rs769177546	G	C	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr9	26892524	26892525	chr9:26892525:A:G	rs3739549	A	G	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr9	26892548	26892549	chr9:26892549:C:G	rs758201016	C	G	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr9	27095073	27095074	chr9:27095074:C:T	rs2782434	C	T	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr9	27467764	27467765	chr9:27467765:G:A	rs7873548	G	A	A	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr9	27690362	27690363	chr9:27690363:T:C	rs11794463	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	27785865	27785866	chr9:27785866:G:A	rs2773417	G	A	a	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr9	28446609	28446610	chr9:28446610:C:T	rs10812830	C	T	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	28603862	28603863	chr9:28603863:T:A	rs72715215	T	A	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr9	28774808	28774809	chr9:28774809:T:C	rs17312190	T	C	T	Sox3.mouse_HMG_2	5	1	-	5.380744003355067	-1.0085374310228215	CCACAATTTTGTTGATT
chr9	28887251	28887252	chr9:28887252:C:G	rs4352929	C	G	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr9	29021956	29021957	chr9:29021957:A:T	rs7864577	A	T	T	Sox3.mouse_HMG_2	7	1	-	6.706582485605583	1.2036522043627713	CCTCAATTTTTGTGATA
chr9	29078513	29078514	chr9:29078514:C:G	rs13296159	C	G	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr9	29228754	29228755	chr9:29228755:G:A	rs2094759	G	A	A	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr9	30048982	30048983	chr9:30048983:G:A	rs2813934	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr9	30366575	30366576	chr9:30366576:T:A	rs10114595	T	A	A	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr9	30587689	30587690	chr9:30587690:C:T	rs12378080	C	T	T	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr9	30592033	30592034	chr9:30592034:T:C	rs13300508	T	C	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr9	30844311	30844312	chr9:30844312:A:C	rs10969889	A	C	C	Sox3.mouse_HMG_2	4	1	+	2.272146027217075	-4.635929200575983	GAACAATGGGAGTGGAG
chr9	31030959	31030960	chr9:31030960:T:G	rs550708606	T	G	T	Sox3.mouse_HMG_2	6	1	+	4.734264876172186	-2.1738103516208724	CAGCAATGCCAGTGGAA
chr9	31100669	31100670	chr9:31100670:G:A	rs13285414	G	A	G	Sox3.mouse_HMG_2	11	1	+	4.432613087526583	-0.13887104080670237	CAGCAATTTCAGTAATA
chr9	31335968	31335969	chr9:31335969:G:A	rs12006512	G	A	A	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr9	32196937	32196938	chr9:32196938:G:A	rs10283638	G	A	G	Sox3.mouse_HMG_2	14	1	+	3.7665024939829004	7.084568763754502	GAAGAATGACATTGGTA
chr9	32378957	32378958	chr9:32378958:A:G	rs10813801	A	G	A	Sox3.mouse_HMG_2	5	1	+	5.209753095220497	-1.1795283391573927	TAACAATGGCATAGAAA
chr9	32787721	32787722	chr9:32787722:C:T	rs214130	C	T	C	Sox3.mouse_HMG_2	1	1	-	6.279274476863238	8.285662418882696	TGTCTATTATATTGATA
chr9	33143935	33143936	chr9:33143936:G:C	rs115905682	G	C	G	Sox3.mouse_HMG_2	13	1	+	3.2566691533931724	-3.130590885534039	GCTGAATTGCAGTGGTG
chr9	33425386	33425387	chr9:33425387:G:A	rs4878538	G	A	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr9	33427702	33427703	chr9:33427703:T:C	rs10813977	T	C	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr9	33460847	33460848	chr9:33460848:T:C	rs10971520	T	C	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr9	33466868	33466869	chr9:33466869:T:C	rs116924567	T	C	t	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr9	33624358	33624359	chr9:33624359:C:T	rs7865060	C	T	.	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr9	33795787	33795788	chr9:33795788:T:G	rs855579	T	G	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr9	33795809	33795810	chr9:33795810:A:G	rs2075584	A	G	A	Sox3.mouse_HMG_2	12	1	-	5.879211518837862	-0.17175561909295461	GATGAATGACAGTGGTG
chr9	33795823	33795824	chr9:33795824:A:C	rs899853332	A	C	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	33896078	33896079	chr9:33896079:A:G	rs34576091	A	G	A	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr9	34272086	34272087	chr9:34272087:T:C	rs72731297	T	C	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr9	34272091	34272092	chr9:34272092:A:C	rs6476440	A	C	A	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr9	34346283	34346284	chr9:34346284:C:T	rs61573237	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr9	34378178	34378179	chr9:34378179:C:T	rs3892022	C	T	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr9	34568858	34568859	chr9:34568859:G:A	rs41274859	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr9	34771232	34771233	chr9:34771233:T:G	rs117042148	T	G	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr9	34960171	34960172	chr9:34960172:C:T	rs145637357	C	T	C	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr9	34985493	34985494	chr9:34985494:G:A	rs73497327	G	A	G	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr9	35141154	35141155	chr9:35141155:G:A	rs10972340	G	A	g	Sox3.mouse_HMG_2	14	1	+	4.994976855309629	8.31304312508123	TTTCAATTGCAGTGGAC
chr9	35358010	35358011	chr9:35358011:A:C	rs10814230	A	C	C	Sox3.mouse_HMG_2	14	1	+	4.163968461109591	-1.8685601564790542	TATGAATTTGATTGATC
chr9	35370485	35370486	chr9:35370486:A:G	chr9:35370486:A:G	A	G	A	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr9	35651599	35651600	chr9:35651600:G:T	rs10972546	G	T	G	Sox3.mouse_HMG_2	13	1	+	3.3418047168513394	-3.0454553220758718	GTGCAAGGCTATTGATG
chr9	35807544	35807545	chr9:35807545:C:T	rs13294264	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr9	35815201	35815202	chr9:35815202:A:G	chr9:35815202:A:G	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr9	36030413	36030414	chr9:36030414:C:T	rs7862640	C	T	c	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr9	36031185	36031186	chr9:36031186:A:T	rs7039141	A	T	a	Sox3.mouse_HMG_2	12	1	-	3.704830307827669	-2.346136830103147	GTTCAAAGACAGTGAAT
chr9	36031186	36031187	chr9:36031187:C:T	rs7039239	C	T	t	Sox3.mouse_HMG_2	11	1	-	3.704830307827669	-0.866653820505616	GTTCAAAGACAGTGAAT
chr9	36175049	36175050	chr9:36175050:G:A	rs890312773	G	A	G	Sox3.mouse_HMG_2	16	1	+	2.8379623417736055	2.626387915288355	GAGCACTTCCAGTGATG
chr9	36359643	36359644	chr9:36359644:C:T	rs16933238	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr9	36765525	36765526	chr9:36765526:C:T	rs10973064	C	T	t	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr9	36847141	36847142	chr9:36847142:G:A	rs7044118	G	A	G	Sox3.mouse_HMG_2	8	1	+	2.056540796249973	0.8377504115054764	TATCAGTGGGAGTGAAT
chr9	36904771	36904772	chr9:36904772:G:A	rs7031673	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr9	36940770	36940771	chr9:36940771:T:C	rs7029230	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr9	37289934	37289935	chr9:37289935:A:C	rs10973289	A	C	A	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr9	37339831	37339832	chr9:37339832:A:G	rs542357804	A	G	A	Sox3.mouse_HMG_2	2	1	-	3.4660730721006847	-2.9008242344250608	AATCAATTTCACTAATT
chr9	37437765	37437766	chr9:37437766:C:G	rs117306138	C	G	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr9	37665977	37665978	chr9:37665978:A:T	rs1536258	A	T	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr9	37693959	37693960	chr9:37693960:C:T	rs7025444	C	T	T	Sox3.mouse_HMG_2	11	1	-	3.784602093890428	-0.7868820344428584	GCACAATGCCAGTGCTA
chr9	37876494	37876495	chr9:37876495:T:C	rs73451233	T	C	T	Sox3.mouse_HMG_2	16	1	+	5.505048101341978	3.9020550516815273	AGTCAATTTCATTCAAT
chr9	38058667	38058668	chr9:38058668:G:A	rs1928244	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr9	38145721	38145722	chr9:38145722:T:C	rs11790887	T	C	t	Sox3.mouse_HMG_2	0	1	+	3.9305841757215645	4.415719189975671	TGTTAGTGTTAGTGATG
chr9	38187010	38187011	chr9:38187011:G:A	rs10973694	G	A	A	Sox3.mouse_HMG_2	16	1	+	3.758734075717724	3.5471596492324737	GATCAATGCTTGAGATG
chr9	38713590	38713591	chr9:38713591:G:A	rs10814744	G	A	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr9	39036298	39036299	chr9:39036299:C:G	rs414044	C	G	-	Sox3.mouse_HMG_2	3	1	+	14.332675654521063	8.282156344631764	TATCAATGTTATTGTTA
chr9	39038534	39038535	chr9:39038535:T:C	rs62567338	T	C	T	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr9	39082859	39082860	chr9:39082860:C:T	rs56121395	C	T	c	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr9	39828562	39828563	chr9:39828563:A:C	rs28696198	A	C	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr9	40990726	40990727	chr9:40990727:G:C	rs1274342225	G	C	.	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr9	41053926	41053927	chr9:41053927:C:A	rs55742906	C	A	C	Sox3.mouse_HMG_2	13	1	-	4.537944284557298	-1.849315754369914	AAGCAACTGTATTGATT
chr9	41648372	41648373	chr9:41648373:C:G	rs1164981139	C	G	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr9	41806907	41806908	chr9:41806908:T:A	rs7847914	T	A	.	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr9	41806944	41806945	chr9:41806945:C:G	rs560711265	C	G	.	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr9	42160447	42160448	chr9:42160448:T:C	rs144621459	T	C	t	Sox3.mouse_HMG_2	6	1	+	2.413648937086683	-3.9756324972912074	CAGCAATGCTCTTGGTG
chr9	42377604	42377605	chr9:42377605:C:A	rs1258094137	C	A	c	Sox3.mouse_HMG_2	3	1	-	4.918934332268645	6.112597766935718	GAAGAATTTTATTGAGC
chr9	42647153	42647154	chr9:42647154:G:C	rs1228237953	G	C	g	Sox3.mouse_HMG_2	11	1	+	2.5203743404811405	-2.7834776815653703	CCTCAGTGACAGTGGTG
chr9	60545748	60545749	chr9:60545749:A:G	rs28775016	A	G	.	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr9	61671537	61671538	chr9:61671538:C:A	rs555358354	C	A	.	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr9	61671548	61671549	chr9:61671549:C:A	rs147217989	C	A	.	Sox3.mouse_HMG_2	8	1	-	0.8696302736273722	1.6832682066315847	CCTCCATGGCAGTGCTT
chr9	62814657	62814658	chr9:62814658:C:T	rs7026273	C	T	.	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr9	64437997	64437998	chr9:64437998:T:A	rs373818045	T	A	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr9	68553066	68553067	chr9:68553067:A:G	rs56320925	A	G	A	Sox3.mouse_HMG_2	1	1	-	2.1947364290664693	2.174518451775824	GTTCAAGTGCAGTGAAC
chr9	68904503	68904504	chr9:68904504:A:G	rs10746969	A	G	A	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr9	68904554	68904555	chr9:68904555:T:C	rs11144206	T	C	T	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr9	69016816	69016817	chr9:69016817:A:C	rs4745520	A	C	A	Sox3.mouse_HMG_2	9	1	-	2.6625530281749326	-3.3214282317093833	GAAGAATGGTCTTGATT
chr9	69128909	69128910	chr9:69128910:A:G	rs7019370	A	G	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr9	69128946	69128947	chr9:69128947:T:C	rs35116982	T	C	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr9	69248121	69248122	chr9:69248122:C:T	rs140442228	C	T	C	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr9	69577274	69577275	chr9:69577275:G:A	rs374444510	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr9	69622706	69622707	chr9:69622707:C:T	rs569486605	C	T	C	Sox3.mouse_HMG_2	14	1	+	3.1121205372967182	5.125267631136718	CATCTATGTCATTGCAG
chr9	69745990	69745991	chr9:69745991:C:A	rs10119846	C	A	A	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr9	69892142	69892143	chr9:69892143:G:A	rs4744952	G	A	A	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr9	70034293	70034294	chr9:70034294:G:C	rs12553082	G	C	C	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr9	70152464	70152465	chr9:70152465:G:A	rs57833200	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr9	70152488	70152489	chr9:70152489:G:A	rs10125454	G	A	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	70414417	70414418	chr9:70414418:G:C	rs115977087	G	C	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr9	70414429	70414430	chr9:70414430:T:C	rs1205461121	T	C	T	Sox3.mouse_HMG_2	10	1	-	1.9646520638528895	-4.94410271546233	AGCCAATGCCAGTGACA
chr9	70609643	70609644	chr9:70609644:C:T	rs10114679	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr9	70947282	70947283	chr9:70947283:T:C	rs150848605	T	C	T	Sox3.mouse_HMG_2	4	1	-	4.230656686778336	-2.158624747599555	GTTCAATTTCATTAGTC
chr9	70964444	70964445	chr9:70964445:T:C	rs35806768	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.2293878639148534	-4.159893570463036	CAGCAATGATACTGAGA
chr9	71029899	71029900	chr9:71029900:A:G	rs11142672	A	G	a	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr9	71246436	71246437	chr9:71246437:T:C	rs4745077	T	C	C	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr9	71492181	71492182	chr9:71492182:T:C	rs10123278	T	C	T	Sox3.mouse_HMG_2	10	1	-	5.3438469685252254	-1.5649078107899939	AATGAATGTTATAGATA
chr9	71643907	71643908	chr9:71643908:A:G	rs2087716	A	G	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr9	71684723	71684724	chr9:71684724:G:C	rs12237894	G	C	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr9	71742529	71742530	chr9:71742530:C:T	rs118079430	C	T	C	Sox3.mouse_HMG_2	0	1	-	3.3381202424596874	1.6416279487570253	GTTCCATTGCATTGACG
chr9	72130299	72130300	chr9:72130300:T:G	rs4237252	T	G	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr9	72293610	72293611	chr9:72293611:C:A	rs12380305	C	A	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr9	72315434	72315435	chr9:72315435:A:G	rs1407474	A	G	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr9	72363063	72363064	chr9:72363064:G:A	rs909172	G	A	G	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr9	72366653	72366654	chr9:72366654:C:T	rs3012508	C	T	T	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr9	72508741	72508742	chr9:72508742:A:G	rs118094997	A	G	A	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr9	72827451	72827452	chr9:72827452:A:G	rs116010353	A	G	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr9	73152668	73152669	chr9:73152669:A:T	rs75902196	A	T	A	Sox3.mouse_HMG_2	4	1	+	1.332316352938798	-5.575758874854259	GGGGAATGTCAGTGAGG
chr9	73156488	73156489	chr9:73156489:A:G	chr9:73156489:A:G	A	G	A	Sox3.mouse_HMG_2	14	1	+	6.2809248895137655	2.962858619742164	TATCAATTATATTTAGG
chr9	73179661	73179662	chr9:73179662:T:C	rs138721150	T	C	T	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr9	73242489	73242490	chr9:73242490:G:T	rs7850771	G	T	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr9	73822693	73822694	chr9:73822694:C:G	rs78729146	C	G	C	Sox3.mouse_HMG_2	12	1	-	5.366083693196523	5.701705227937421	GATCAAGGTCATGGATG
chr9	74200393	74200394	chr9:74200394:T:A	rs4263838	T	A	A	Sox3.mouse_HMG_2	11	1	+	9.601020193860034	3.6490138881129233	AGTCAATTTCATTGTTA
chr9	74562690	74562691	chr9:74562691:C:T	rs972903	C	T	t	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr9	74946798	74946799	chr9:74946799:G:C	rs113259722	G	C	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr9	75451791	75451792	chr9:75451792:G:A	rs73545847	G	A	G	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr9	75457844	75457845	chr9:75457845:T:C	rs4745404	T	C	C	Sox3.mouse_HMG_2	14	1	-	3.1183515143221427	-0.19971475544945855	GGTGAATGGAAGTGATG
chr9	75488998	75488999	chr9:75488999:C:A	rs1854131	C	A	C	Sox3.mouse_HMG_2	15	1	+	5.738816187906512	7.215225911953622	ATTCAATTACAGTGACA
chr9	75904269	75904270	chr9:75904270:C:A	rs940791353	C	A	C	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr9	75904288	75904289	chr9:75904289:A:C	rs139523119	A	C	A	Sox3.mouse_HMG_2	5	1	+	6.0926927320168485	-0.8153824957762073	GATTAATTCTATTCATT
chr9	76108019	76108020	chr9:76108020:G:A	rs914367	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr9	76155601	76155602	chr9:76155602:G:A	rs7047773	G	A	A	Sox3.mouse_HMG_2	15	1	+	1.5100137316926	1.9437511829539411	CATCAAAGGCATTCAGG
chr9	76215367	76215368	chr9:76215368:C:T	rs185538078	C	T	C	Sox3.mouse_HMG_2	4	1	-	3.552078154667517	9.941359589045408	ACTCGATTCTAGTGATC
chr9	76356315	76356316	chr9:76356316:G:A	rs10869765	G	A	A	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr9	76356336	76356337	chr9:76356337:T:C	rs7034265	T	C	t	Sox3.mouse_HMG_2	16	1	+	3.8635063096591056	2.2605132599986546	TATAAATGCTCTTGATT
chr9	76510247	76510248	chr9:76510248:C:G	rs7040974	C	G	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	76631122	76631123	chr9:76631123:C:G	rs73650264	C	G	C	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr9	76718490	76718491	chr9:76718491:T:C	rs4744803	T	C	T	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr9	76894100	76894101	chr9:76894101:G:C	rs7846795	G	C	G	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr9	77252593	77252594	chr9:77252594:T:C	rs72744208	T	C	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr9	77402202	77402203	chr9:77402203:G:A	rs12350805	G	A	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr9	77417383	77417384	chr9:77417384:C:A	rs13286867	C	A	C	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr9	77461330	77461331	chr9:77461331:G:A	rs3780293	G	A	A	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr9	77543751	77543752	chr9:77543752:C:T	rs142272328	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr9	77596187	77596188	chr9:77596188:G:A	rs36024384	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr9	77715801	77715802	chr9:77715802:G:C	rs4745664	G	C	C	Sox3.mouse_HMG_2	0	1	-	4.032553958317735	4.337187475841924	CAACACTGGCAGTGAAT
chr9	77854830	77854831	chr9:77854831:G:T	rs7048811	G	T	T	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr9	77891723	77891724	chr9:77891724:T:C	rs2296936	T	C	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr9	78559453	78559454	chr9:78559454:G:T	rs3009700	G	T	T	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr9	78865779	78865780	chr9:78865780:A:G	rs7046415	A	G	G	Sox3.mouse_HMG_2	5	1	-	2.7977319385468107	2.7977319385468107	GAACATTTACATTGAAA
chr9	78924035	78924036	chr9:78924036:G:A	rs7874303	G	A	G	Sox3.mouse_HMG_2	0	1	+	2.3276007922827358	0.6311084985800747	GGACAATGATATTTGTG
chr9	78929773	78929774	chr9:78929774:T:C	rs7855629	T	C	C	Sox3.mouse_HMG_2	14	1	-	1.967115084913681	-1.3509511848579208	CATTGATGGCAGTGAGA
chr9	79121458	79121459	chr9:79121459:C:G	rs79941354	C	G	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr9	79201983	79201984	chr9:79201984:G:C	rs728987	G	C	T	Sox3.mouse_HMG_2	-14	0	+	0	0	.
chr9	79800573	79800574	chr9:79800574:G:T	rs17082693	G	T	G	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr9	79952896	79952897	chr9:79952897:T:C	rs17729057	T	C	T	Sox3.mouse_HMG_2	12	1	+	5.889519848084606	-0.16144728984621076	GAAGAATGGTATTGGTG
chr9	80385591	80385592	chr9:80385592:C:T	rs7861030	C	T	C	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr9	80385593	80385594	chr9:80385594:G:A	rs12380683	G	A	G	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr9	80556900	80556901	chr9:80556901:T:G	rs1359987	T	G	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr9	80754979	80754980	chr9:80754980:T:C	rs10491934	T	C	T	Sox3.mouse_HMG_2	8	1	+	4.711881283401292	3.457459317245622	TTTCAGTTTCATTGAGA
chr9	80792481	80792482	chr9:80792482:A:C	rs2039368	A	C	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	80868136	80868137	chr9:80868137:T:G	rs76639411	T	G	T	Sox3.mouse_HMG_2	3	1	+	5.919082853881047	4.7254194192139725	GATTAATGATGTTGATT
chr9	80868150	80868151	chr9:80868151:A:G	rs80082686	A	G	A	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr9	80946258	80946259	chr9:80946259:G:C	rs17244636	G	C	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr9	81125435	81125436	chr9:81125436:C:T	rs885035	C	T	T	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr9	81174325	81174326	chr9:81174326:T:C	rs10867703	T	C	T	Sox3.mouse_HMG_2	11	1	-	6.8420387563844365	11.413522884717722	CATCAATGACAATGGTA
chr9	81456276	81456277	chr9:81456277:C:A	rs7875840	C	A	C	Sox3.mouse_HMG_2	11	1	-	2.4541945891304513	3.8347167665442763	GATCAATGTTAGAAACT
chr9	81456304	81456305	chr9:81456305:C:T	rs11139264	C	T	T	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr9	81597426	81597427	chr9:81597427:C:A	rs78237454	C	A	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr9	81752266	81752267	chr9:81752267:T:C	rs75122168	T	C	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr9	82878109	82878110	chr9:82878110:T:G	rs10867910	T	G	T	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr9	82882924	82882925	chr9:82882925:G:C	rs17733409	G	C	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr9	83182458	83182459	chr9:83182459:C:G	rs1408098	C	G	G	Sox3.mouse_HMG_2	14	1	-	3.1839879597845657	0.46952561196752257	GTTGAATGACAGTGGTG
chr9	83209655	83209656	chr9:83209656:C:A	rs11139965	C	A	C	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr9	83247903	83247904	chr9:83247904:G:A	rs78846594	G	A	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr9	83469622	83469623	chr9:83469623:C:T	rs17086295	C	T	C	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr9	83639445	83639446	chr9:83639446:G:A	rs7866066	G	A	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr9	83639638	83639639	chr9:83639639:C:T	rs1413293	C	T	T	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr9	83992654	83992655	chr9:83992655:T:C	rs73471387	T	C	T	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr9	83992698	83992699	chr9:83992699:G:A	chr9:83992699:G:A	G	A	G	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr9	84146865	84146866	chr9:84146866:T:C	rs1246264	T	C	C	Sox3.mouse_HMG_2	-5	0	+	0	0	.
chr9	84169831	84169832	chr9:84169832:A:T	rs871228	A	T	T	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr9	84285453	84285454	chr9:84285454:T:A	rs56350726	T	A	T	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr9	84599402	84599403	chr9:84599403:C:A	rs17087445	C	A	C	Sox3.mouse_HMG_2	0	1	-	1.5656487880232255	0.7758802562449288	GTTTACTGCCAGTGATG
chr9	84698640	84698641	chr9:84698641:C:T	rs1187338	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr9	84970708	84970709	chr9:84970709:A:G	rs3860945	A	G	A	Sox3.mouse_HMG_2	11	1	-	3.2955742393667027	-3.388799960093632	CATGAAGTATATTGATT
chr9	84970709	84970710	chr9:84970710:T:C	rs10868240	T	C	T	Sox3.mouse_HMG_2	10	1	-	3.2955742393667027	-3.6131805399485155	CATGAAGTATATTGATT
chr9	85792193	85792194	chr9:85792194:C:G	chr9:85792194:C:G	C	G	.	Sox3.mouse_HMG_2	-3	0	+	0	0	.
chr9	85859799	85859800	chr9:85859800:C:G	rs75315455	C	G	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr9	86396699	86396700	chr9:86396700:T:C	rs187136	T	C	C	Sox3.mouse_HMG_2	5	1	-	4.507456671332399	-1.8818247630454905	GAACAATTTTTTTGGTA
chr9	86560103	86560104	chr9:86560104:A:C	rs55905974	A	C	A	Sox3.mouse_HMG_2	2	1	-	1.984569043292218	-3.1693056233876713	CATGCATGACAGTGATG
chr9	86967866	86967867	chr9:86967867:A:G	rs62563157	A	G	G	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr9	87086439	87086440	chr9:87086440:G:A	rs760569968	G	A	G	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr9	87179489	87179490	chr9:87179490:C:T	rs278664	C	T	T	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr9	87181144	87181145	chr9:87181145:C:G	rs4878045	C	G	C	Sox3.mouse_HMG_2	16	1	-	2.899054837782183	1.6597834777556781	ATGCAATGTTGTTGATG
chr9	87290626	87290627	chr9:87290627:T:C	rs4878051	T	C	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr9	87370334	87370335	chr9:87370335:T:G	rs7861579	T	G	T	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr9	87428747	87428748	chr9:87428748:C:G	rs140756676	C	G	C	Sox3.mouse_HMG_2	0	1	-	5.871565005616706	5.566931488092518	GATCAATGGCAATTATT
chr9	87515364	87515365	chr9:87515365:T:C	rs36229266	T	C	T	Sox3.mouse_HMG_2	9	1	+	2.2147107241731203	1.5220581813011609	GCTCTGTTTTATTGATG
chr9	87518484	87518485	chr9:87518485:T:C	rs10868613	T	C	C	Sox3.mouse_HMG_2	2	1	+	9.720904639029593	3.3540073325038464	CGTCAATCTCATTGATG
chr9	87541930	87541931	chr9:87541931:C:T	rs1041326	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr9	87599906	87599907	chr9:87599907:T:C	rs75144902	T	C	T	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr9	88115232	88115233	chr9:88115233:T:C	rs620889	T	C	.	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	88215668	88215669	chr9:88215669:T:C	rs2250871	T	C	T	Sox3.mouse_HMG_2	5	1	-	8.766502267908109	2.377220833530219	GTTCAATGTTAATGAAT
chr9	88661928	88661929	chr9:88661929:A:G	rs77485037	A	G	A	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr9	88749037	88749038	chr9:88749038:G:A	rs17054413	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr9	88808695	88808696	chr9:88808696:T:G	rs2653814	T	G	G	Sox3.mouse_HMG_2	14	1	+	3.624783565130814	4.326098819107858	TCACAATGGCATTGTCT
chr9	88888054	88888055	chr9:88888055:A:G	rs1393570	A	G	A	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr9	88997663	88997664	chr9:88997664:T:A	rs72748922	T	A	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr9	89114097	89114098	chr9:89114098:T:C	rs73498185	T	C	T	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr9	89137699	89137700	chr9:89137700:T:C	rs112269322	T	C	T	Sox3.mouse_HMG_2	6	1	+	4.940318430291631	-1.4489630040862582	TGAGAATGTCAGTGATA
chr9	89154843	89154844	chr9:89154844:G:A	rs2039307	G	A	G	Sox3.mouse_HMG_2	3	1	-	1.7742266594106766	-3.082629215811546	GGTCTATTGCATTGCTG
chr9	89154847	89154848	chr9:89154848:A:G	rs1888642	A	G	A	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr9	89218427	89218428	chr9:89218428:G:A	rs7852045	G	A	G	Sox3.mouse_HMG_2	3	1	-	2.458785380307652	-2.3980704949145704	GGTCGATGTAATTGAAA
chr9	89363675	89363676	chr9:89363676:C:T	rs76395868	C	T	C	Sox3.mouse_HMG_2	11	1	-	7.184974496684195	2.6134903683509085	TTACAATGGCAGTGAAA
chr9	89414153	89414154	chr9:89414154:T:C	rs17529841	T	C	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr9	89614190	89614191	chr9:89614191:A:G	rs955965	A	G	A	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr9	89713443	89713444	chr9:89713444:A:G	rs117330674	A	G	A	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr9	89735702	89735703	chr9:89735703:A:T	rs1046992296	A	T	A	Sox3.mouse_HMG_2	4	1	+	3.755563150762973	-3.1525120770300847	GTACAATGGCAGTGGCT
chr9	89850652	89850653	chr9:89850653:T:C	rs984864038	T	C	C	Sox3.mouse_HMG_2	4	1	-	5.287177399520487	-1.1021040348574025	TTTCAACTTCATTGAGT
chr9	89850665	89850666	chr9:89850666:C:T	rs964704234	C	T	C	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr9	89889075	89889076	chr9:89889076:C:T	rs1371192153	C	T	C	Sox3.mouse_HMG_2	6	1	-	1.180122606523214	1.180122606523214	CCTCAAGGGTAGAGATG
chr9	90331592	90331593	chr9:90331593:C:T	rs1777048	C	T	T	Sox3.mouse_HMG_2	11	1	-	2.849002089734443	-1.7224820385988422	GATCAATGGAAGGGAAT
chr9	90444454	90444455	chr9:90444455:C:A	rs7046597	C	A	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr9	90640123	90640124	chr9:90640124:C:G	rs1331502	C	G	.	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr9	90640234	90640235	chr9:90640235:A:T	rs1331503	A	T	.	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr9	90641231	90641232	chr9:90641232:C:T	rs139024903	C	T	.	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr9	90699366	90699367	chr9:90699367:A:G	rs1173107	A	G	.	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr9	90813393	90813394	chr9:90813394:T:G	rs290233	T	G	T	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr9	90831096	90831097	chr9:90831097:A:G	rs290219	A	G	G	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr9	90840371	90840372	chr9:90840372:C:T	rs140369985	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr9	90878549	90878550	chr9:90878550:G:A	rs12003597	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr9	90878589	90878590	chr9:90878590:C:A	rs12005209	C	A	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr9	91045213	91045214	chr9:91045214:A:G	rs10115589	A	G	A	Sox3.mouse_HMG_2	4	1	+	2.2021426773772714	-4.187138757000619	GGTCAATGACATTCCTG
chr9	91045225	91045226	chr9:91045226:G:A	rs117094759	G	A	G	Sox3.mouse_HMG_2	16	1	+	2.2021426773772714	1.9905682508920208	GGTCAATGACATTCCTG
chr9	91119741	91119742	chr9:91119742:T:C	rs73507579	T	C	T	Sox3.mouse_HMG_2	7	1	+	5.129807215604012	-0.373123065638799	AATTCATTTTATTGATT
chr9	91665825	91665826	chr9:91665826:C:T	rs9409451	C	T	c	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr9	91947577	91947578	chr9:91947578:G:A	rs62565755	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr9	91951037	91951038	chr9:91951038:A:G	rs890989775	A	G	A	Sox3.mouse_HMG_2	8	1	-	2.102676372416333	0.8482544062606638	GATCAATCTCATGGAAC
chr9	91992980	91992981	chr9:91992981:A:C	rs7872437	A	C	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr9	92098614	92098615	chr9:92098615:G:C	rs17749165	G	C	-	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr9	92637038	92637039	chr9:92637039:G:A	rs10820997	G	A	A	Sox3.mouse_HMG_2	13	1	+	3.4813484542183417	-2.57029004996797	GTTCATTTGTAGTGAGA
chr9	92811401	92811402	chr9:92811402:A:G	rs1853429	A	G	a	Sox3.mouse_HMG_2	10	1	+	3.6498540620370616	-3.2589007172781588	CACCAATTCCATTGTAT
chr9	92878943	92878944	chr9:92878944:T:C	rs72741015	T	C	T	Sox3.mouse_HMG_2	4	1	-	5.388340100712897	-1.0009413336649935	TGTCAATTTTATTAACA
chr9	93186878	93186879	chr9:93186879:G:A	rs7046200	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr9	93277157	93277158	chr9:93277158:A:T	rs72743435	A	T	A	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr9	93370041	93370042	chr9:93370042:G:T	rs184013898	G	T	G	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr9	93803005	93803006	chr9:93803006:C:T	rs10821226	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr9	93869240	93869241	chr9:93869241:A:G	rs11787920	A	G	A	Sox3.mouse_HMG_2	0	1	-	3.1087588223791336	3.593893836633242	TAACAAGGCCATTGGTG
chr9	94553021	94553022	chr9:94553022:A:G	rs3802468	A	G	A	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr9	94713542	94713543	chr9:94713543:G:A	rs60234052	G	A	G	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr9	94747380	94747381	chr9:94747381:G:A	rs79654060	G	A	G	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr9	94883208	94883209	chr9:94883209:G:T	rs56319051	G	T	T	Sox3.mouse_HMG_2	3	1	-	5.506954173537872	-1.3937160657210343	GTACAATTCCAGTGACT
chr9	94885721	94885722	chr9:94885722:G:A	rs555935952	G	A	g	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr9	94885733	94885734	chr9:94885734:T:C	rs78303333	T	C	t	Sox3.mouse_HMG_2	5	1	-	2.241335954518088	-4.147945479859802	TGTCTATTCCAGTGGTT
chr9	95003105	95003106	chr9:95003106:C:T	rs117058004	C	T	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr9	95018690	95018691	chr9:95018691:A:G	rs62579892	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.366898383542281	-3.0223830508356095	GAAGAATGCTAGTGTTG
chr9	95018709	95018710	chr9:95018710:G:C	rs3802455	G	C	G	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr9	95110107	95110108	chr9:95110108:G:A	rs146857602	G	A	G	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr9	95381119	95381120	chr9:95381120:C:T	rs357543	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr9	95478386	95478387	chr9:95478387:G:A	rs56319001	G	A	G	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr9	95504087	95504088	chr9:95504088:A:G	rs4448343	A	G	G	Sox3.mouse_HMG_2	15	1	+	3.4361224926120255	3.0023850413506845	TAGCTATTTTATTGAAT
chr9	95626984	95626985	chr9:95626985:C:T	rs150649707	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr9	95630057	95630058	chr9:95630058:G:T	rs6478302	G	T	T	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr9	95874651	95874652	chr9:95874652:A:G	rs948809689	A	G	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr9	96065168	96065169	chr9:96065169:C:T	rs4743505	C	T	T	Sox3.mouse_HMG_2	11	1	-	4.713200897455029	0.1417167691217444	ACTCATTGTTAGTGAAT
chr9	97345350	97345351	chr9:97345351:A:G	rs7034449	A	G	A	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr9	97345352	97345353	chr9:97345353:C:T	rs10435867	C	T	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr9	97388273	97388274	chr9:97388274:T:C	rs35778461	T	C	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr9	97407735	97407736	chr9:97407736:G:A	rs55712525	G	A	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr9	97986681	97986682	chr9:97986682:A:T	rs76408563	A	T	A	Sox3.mouse_HMG_2	12	1	-	5.622879635791217	-0.4280875021395996	CATCAATTTCTGTGGTG
chr9	98165264	98165265	chr9:98165265:T:C	rs7032570	T	C	T	Sox3.mouse_HMG_2	0	1	+	6.3673160052779245	6.852451019532033	TAACAATTCTATTGTAA
chr9	98273338	98273339	chr9:98273339:C:A	rs62574300	C	A	C	Sox3.mouse_HMG_2	13	1	-	5.3133356948989885	-1.0739243440282227	TTTCAAGGTCATTGGTT
chr9	98372792	98372793	chr9:98372793:G:A	rs565349	G	A	A	Sox3.mouse_HMG_2	-1	0	+	0	0	.
chr9	98506237	98506238	chr9:98506238:T:C	rs871797	T	C	C	Sox3.mouse_HMG_2	-6	0	-	0	0	.
chr9	98568138	98568139	chr9:98568139:G:C	rs13288889	G	C	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr9	98804487	98804488	chr9:98804488:A:T	rs7039118	A	T	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr9	98886755	98886756	chr9:98886756:C:T	rs117757615	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr9	98886792	98886793	chr9:98886793:G:A	rs145762742	G	A	G	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr9	98909526	98909527	chr9:98909527:G:T	rs142992897	G	T	G	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr9	98920289	98920290	chr9:98920290:T:G	rs13288865	T	G	T	Sox3.mouse_HMG_2	2	1	+	5.197039951021077	0.043165284341186314	ACTAAATTGCATTGATA
chr9	99278067	99278068	chr9:99278068:C:T	rs1013840988	C	T	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr9	99346134	99346135	chr9:99346135:G:A	rs147138188	G	A	G	Sox3.mouse_HMG_2	23	0	-	0	0	.
chr9	99359506	99359507	chr9:99359507:A:G	chr9:99359507:A:G	A	G	A	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr9	99359556	99359557	chr9:99359557:G:A	rs77682886	G	A	G	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr9	99378443	99378444	chr9:99378444:C:T	rs13297598	C	T	C	Sox3.mouse_HMG_2	7	1	-	8.073849725036151	1.445028229948093	GTTCAATGTCAATGAAT
chr9	99472074	99472075	chr9:99472075:A:G	rs602522	A	G	A	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr9	99588537	99588538	chr9:99588538:T:A	rs4743360	T	A	A	Sox3.mouse_HMG_2	12	1	+	2.5990868335478132	-3.451880304383003	CCTCAATGCCAGTTTTG
chr9	99711159	99711160	chr9:99711160:C:A	rs1147312	C	A	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr9	99869952	99869953	chr9:99869953:T:C	rs2416878	T	C	T	Sox3.mouse_HMG_2	10	1	-	6.427013854952583	-0.48174092436263755	AATAAATGTTAGTGAGA
chr9	99878808	99878809	chr9:99878809:T:A	rs112933989	T	A	T	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr9	99922760	99922761	chr9:99922761:G:A	rs10121880	G	A	A	Sox3.mouse_HMG_2	21	0	+	0	0	.
chr9	100013808	100013809	chr9:100013809:A:T	rs10988945	A	T	A	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr9	100282016	100282017	chr9:100282017:G:T	rs7866700	G	T	G	Sox3.mouse_HMG_2	15	1	+	5.640954982947631	8.378082127667657	CCTTAATGGCAGTGAGA
chr9	100395232	100395233	chr9:100395233:C:A	rs12000794	C	A	C	Sox3.mouse_HMG_2	9	1	+	5.488614506661457	0.19728578964909754	AATCACTGGCAGTGAGT
chr9	100411556	100411557	chr9:100411557:T:C	rs10819773	T	C	C	Sox3.mouse_HMG_2	5	1	-	3.315783225205502	-3.073498209172388	GTACAATGTCAATGACT
chr9	100855979	100855980	chr9:100855980:G:C	rs10989276	G	C	G	Sox3.mouse_HMG_2	13	1	+	2.019944876899559	-4.367315162027652	CATCAACCTCATTGGTG
chr9	102729007	102729008	chr9:102729008:A:G	rs10820257	A	G	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr9	102729014	102729015	chr9:102729015:T:G	rs10118172	T	G	G	Sox3.mouse_HMG_2	28	0	-	0	0	.
chr9	102981792	102981793	chr9:102981793:A:G	rs6479146	A	G	G	Sox3.mouse_HMG_2	5	1	+	6.618822801681335	0.22954136730344693	TTTGAATTTCAGTGATG
chr9	103707364	103707365	chr9:103707365:A:G	rs113313647	A	G	A	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr9	104014448	104014449	chr9:104014449:T:C	rs7466900	T	C	T	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr9	104091222	104091223	chr9:104091223:G:A	rs1999153	G	A	A	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr9	104092263	104092264	chr9:104092264:G:A	rs10512326	G	A	G	Sox3.mouse_HMG_2	23	0	+	0	0	.
chr9	104557076	104557077	chr9:104557077:G:T	rs62569012	G	T	G	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr9	104832004	104832005	chr9:104832005:T:C	rs116581454	T	C	T	Sox3.mouse_HMG_2	10	1	-	2.925204833617686	-3.9835499456975327	CTTAAATTGCAGTGAAA
chr9	104882269	104882270	chr9:104882270:C:T	rs79252500	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr9	105102875	105102876	chr9:105102876:A:G	rs7029430	A	G	G	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr9	105118953	105118954	chr9:105118954:A:T	rs79458351	A	T	A	Sox3.mouse_HMG_2	5	1	+	2.617209535558291	-4.290865692234767	AGTCAATGTGAGTGCTT
chr9	105183199	105183200	chr9:105183200:G:A	rs58525889	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr9	105187892	105187893	chr9:105187893:A:G	rs7866760	A	G	G	Sox3.mouse_HMG_2	12	1	+	3.6748779292717417	3.3392563945308424	TAGCAATGTTAGAGAAG
chr9	105259338	105259339	chr9:105259339:C:T	rs116225209	C	T	C	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr9	105483802	105483803	chr9:105483803:C:G	rs2812311	C	G	C	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr9	105652163	105652164	chr9:105652164:G:A	rs551015	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr9	106456345	106456346	chr9:106456346:C:T	rs2900412	C	T	C	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr9	106480113	106480114	chr9:106480114:A:C	rs117220866	A	C	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr9	106602784	106602785	chr9:106602785:G:A	rs6477534	G	A	A	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr9	106643655	106643656	chr9:106643656:G:C	rs57849724	G	C	G	Sox3.mouse_HMG_2	-3	0	-	0	0	.
chr9	107046977	107046978	chr9:107046978:G:A	rs6477555	G	A	A	Sox3.mouse_HMG_2	3	1	-	7.423920875205841	2.56706499998362	TATCAATGTTGTTGTTA
chr9	107162444	107162445	chr9:107162445:A:G	rs7035605	A	G	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr9	107176814	107176815	chr9:107176815:C:T	rs12340562	C	T	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr9	107309416	107309417	chr9:107309417:C:T	rs72738207	C	T	C	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr9	107392717	107392718	chr9:107392718:C:A	rs145477526	C	A	C	Sox3.mouse_HMG_2	8	1	+	2.1676522718245987	1.38964592023156	CCCCAAGGCTATTGATT
chr9	107466442	107466443	chr9:107466443:G:A	rs67249072	G	A	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr9	107490117	107490118	chr9:107490118:C:T	rs115212381	C	T	C	Sox3.mouse_HMG_2	11	1	-	1.5917490135147747	-2.9797351148185105	CGACAATGGCGGTGAGT
chr9	107505281	107505282	chr9:107505282:G:T	rs1014575033	G	T	G	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr9	107645670	107645671	chr9:107645671:G:C	rs940291	G	C	G	Sox3.mouse_HMG_2	31	0	+	0	0	.
chr9	107657344	107657345	chr9:107657345:A:T	rs10978974	A	T	A	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr9	107751523	107751524	chr9:107751524:G:A	rs10979036	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr9	107814668	107814669	chr9:107814669:C:G	rs77621408	C	G	C	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr9	107933109	107933110	chr9:107933110:A:G	rs74941932	A	G	A	Sox3.mouse_HMG_2	5	1	+	3.1241822668382335	-3.2650991675396575	AATCAATGGCAGTTTTC
chr9	108109133	108109134	chr9:108109134:C:T	rs10979214	C	T	C	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr9	108136683	108136684	chr9:108136684:G:A	rs10979237	G	A	A	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr9	108218313	108218314	chr9:108218314:A:G	rs4246873	A	G	G	Sox3.mouse_HMG_2	1	1	+	3.826492683140222	1.8201047411207645	TAGCAATTGTAGTAATA
chr9	108762540	108762541	chr9:108762541:C:T	rs56052940	C	T	C	Sox3.mouse_HMG_2	3	1	+	2.0461617342453255	-2.8106941409768957	CTACATTGTTAGTGAGG
chr9	109109583	109109584	chr9:109109584:T:C	rs7870597	T	C	T	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	109278436	109278437	chr9:109278437:C:T	rs4978791	C	T	C	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr9	109327651	109327652	chr9:109327652:T:A	rs139698166	T	A	T	Sox3.mouse_HMG_2	12	1	+	1.6604638621601668	-4.39050327577065	GAGCCATGCCAGTGAAG
chr9	109424051	109424052	chr9:109424052:A:T	rs10816809	A	T	A	Sox3.mouse_HMG_2	2	1	+	2.815996392647078	6.097653168430614	CCACACTGCCAGTGATG
chr9	109470322	109470323	chr9:109470323:T:G	rs7020624	T	G	T	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr9	109535898	109535899	chr9:109535899:A:C	rs7870491	A	C	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr9	109574485	109574486	chr9:109574486:A:G	chr9:109574486:A:G	A	G	A	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr9	109574513	109574514	chr9:109574514:T:C	rs145866260	T	C	T	Sox3.mouse_HMG_2	11	1	+	5.7508348429722425	-0.9335393564880927	AAACAATTCTATTGCTA
chr9	109604354	109604355	chr9:109604355:G:A	rs4978839	G	A	G	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr9	109708392	109708393	chr9:109708393:A:G	rs956466	A	G	G	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr9	109774148	109774149	chr9:109774149:G:A	rs7022209	G	A	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr9	109880400	109880401	chr9:109880401:G:A	rs560815584	G	A	G	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr9	109972164	109972165	chr9:109972165:T:C	rs4978864	T	C	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr9	110099579	110099580	chr9:110099580:C:G	rs116889253	C	G	C	Sox3.mouse_HMG_2	36	0	-	0	0	.
chr9	110191708	110191709	chr9:110191709:C:T	rs76360042	C	T	C	Sox3.mouse_HMG_2	9	1	+	3.7758544029904497	4.468506945862409	AAACAATGCCAGTGCTC
chr9	110217742	110217743	chr9:110217743:A:G	rs79039078	A	G	a	Sox3.mouse_HMG_2	33	0	-	0	0	.
chr9	110254604	110254605	chr9:110254605:T:C	rs4135168	T	C	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr9	110520212	110520213	chr9:110520213:A:G	rs184681102	A	G	A	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr9	110520245	110520246	chr9:110520246:G:A	rs189228498	G	A	G	Sox3.mouse_HMG_2	20	0	+	0	0	.
chr9	110537925	110537926	chr9:110537926:C:T	rs10759440	C	T	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr9	110583311	110583312	chr9:110583312:T:C	rs149965031	T	C	T	Sox3.mouse_HMG_2	-18	0	+	0	0	.
chr9	110878187	110878188	chr9:110878188:A:G	rs544276	A	G	A	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr9	111013502	111013503	chr9:111013503:C:G	rs10739312	C	G	G	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr9	111153248	111153249	chr9:111153249:T:C	rs10980799	T	C	T	Sox3.mouse_HMG_2	-13	0	+	0	0	.
chr9	111161442	111161443	chr9:111161443:A:G	rs12350763	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr9	111353728	111353729	chr9:111353729:T:C	rs35381875	T	C	T	Sox3.mouse_HMG_2	6	1	+	6.493192490038559	0.10391105566066772	CAACAATTTTGTTGATC
chr9	111475319	111475320	chr9:111475320:C:T	rs12238412	C	T	C	Sox3.mouse_HMG_2	5	1	+	2.8607777517948136	2.8607777517948136	GAACACTGGCAGTGACT
chr9	111658924	111658925	chr9:111658925:T:C	rs4979026	T	C	t	Sox3.mouse_HMG_2	30	0	-	0	0	.
chr9	111658956	111658957	chr9:111658957:T:C	rs13285010	T	C	C	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	111825618	111825619	chr9:111825619:G:A	rs73656298	G	A	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr9	112028869	112028870	chr9:112028870:G:A	rs1324210	G	A	A	Sox3.mouse_HMG_2	-20	0	+	0	0	.
chr9	112047821	112047822	chr9:112047822:A:G	rs10981228	A	G	A	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr9	112064903	112064904	chr9:112064904:G:A	rs10817259	G	A	G	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr9	112194266	112194267	chr9:112194267:A:G	rs10125519	A	G	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr9	112437544	112437545	chr9:112437545:G:A	rs7866567	G	A	G	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr9	112489303	112489304	chr9:112489304:T:G	rs7870207	T	G	T	Sox3.mouse_HMG_2	6	1	+	7.7622276914543225	0.8541524636612652	TGTCAGTGGTAGTGATA
chr9	113153974	113153975	chr9:113153975:A:G	rs7856379	A	G	G	Sox3.mouse_HMG_2	10	1	+	4.0140095549449475	-2.8947452243702734	ACTCACTGTTATTGTTG
chr9	113206397	113206398	chr9:113206398:T:C	rs1133620	T	C	C	Sox3.mouse_HMG_2	4	1	-	3.7092718828437765	-2.6800095515341122	GATTATTTGTATTGAAT
chr9	113340886	113340887	chr9:113340887:T:C	rs12235345	T	C	T	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr9	113340899	113340900	chr9:113340900:C:G	rs12350131	C	G	G	Sox3.mouse_HMG_2	3	1	+	7.144235156842375	1.093715846953076	AATCAATGGCAGGGATC
chr9	113512198	113512199	chr9:113512199:G:A	rs114133679	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr9	113536619	113536620	chr9:113536620:C:T	rs7032311	C	T	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr9	113536636	113536637	chr9:113536637:A:G	rs112189420	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.901104925841204	-3.4881765085366867	CCTCAATGTCACTGGGG
chr9	113615263	113615264	chr9:113615264:T:C	rs79222753	T	C	T	Sox3.mouse_HMG_2	6	1	+	5.461388836661882	-0.9278925977160091	GATCAATGCCTGTGTTT
chr9	113682374	113682375	chr9:113682375:C:T	rs79464171	C	T	C	Sox3.mouse_HMG_2	11	1	-	8.091919619127061	3.520435490793775	CATCAGTGGTAGTGAGT
chr9	113705772	113705773	chr9:113705773:C:T	rs75260470	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr9	113707840	113707841	chr9:113707841:A:G	rs7852801	A	G	A	Sox3.mouse_HMG_2	12	1	-	4.944568117509193	-1.1063990204216225	GTACAATTCTATTAATG
chr9	113893119	113893120	chr9:113893120:G:A	rs75293905	G	A	G	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr9	113942185	113942186	chr9:113942186:T:C	rs11791817	T	C	T	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr9	113947079	113947080	chr9:113947080:G:C	rs10982014	G	C	G	Sox3.mouse_HMG_2	3	1	-	1.4218001554135966	-4.628719154475699	TGTCAATGGTGGTGCTG
chr9	113947081	113947082	chr9:113947082:C:T	rs10982015	C	T	C	Sox3.mouse_HMG_2	1	1	-	1.4218001554135966	3.4281880974330554	TGTCAATGGTGGTGCTG
chr9	113986108	113986109	chr9:113986109:A:G	rs148054353	A	G	A	Sox3.mouse_HMG_2	5	1	+	2.860993669466561	-3.5282877649113282	TAACAATGGTCGTGGTG
chr9	114026973	114026974	chr9:114026974:A:T	rs77198048	A	T	A	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr9	114125786	114125787	chr9:114125787:C:T	rs2217541	C	T	C	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr9	114143337	114143338	chr9:114143338:C:T	rs4979342	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr9	114225988	114225989	chr9:114225989:C:T	rs7028958	C	T	C	Sox3.mouse_HMG_2	17	0	+	0	0	.
chr9	114276830	114276831	chr9:114276831:A:G	rs1766059	A	G	G	Sox3.mouse_HMG_2	-13	0	-	0	0	.
chr9	114278178	114278179	chr9:114278179:G:A	rs112446757	G	A	G	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr9	114326058	114326059	chr9:114326059:C:T	rs372253280	C	T	C	Sox3.mouse_HMG_2	8	1	+	5.785974664744719	7.040396630900389	AGTAAATGCCAGTGATT
chr9	114482805	114482806	chr9:114482806:A:C	rs10982239	A	C	A	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr9	114606493	114606494	chr9:114606494:C:T	rs79107791	C	T	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr9	114608257	114608258	chr9:114608258:T:C	rs4978600	T	C	C	Sox3.mouse_HMG_2	19	0	-	0	0	.
chr9	114736191	114736192	chr9:114736192:A:G	rs72754566	A	G	A	Sox3.mouse_HMG_2	8	1	-	4.279485400773207	3.0250634346175365	CTTGAATGTTATTCATT
chr9	114908383	114908384	chr9:114908384:A:T	rs12337739	A	T	T	Sox3.mouse_HMG_2	6	1	-	1.6053038658575474	-5.302771361935509	CTGCAATGCCAGTGGGA
chr9	115010302	115010303	chr9:115010303:T:A	rs10817699	T	A	-	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr9	115024854	115024855	chr9:115024855:A:T	rs115276378	A	T	A	Sox3.mouse_HMG_2	12	1	-	2.490056923742217	-3.560910214188599	AAGCAATGGTACTGAAA
chr9	115062195	115062196	chr9:115062196:G:A	rs76627923	G	A	A	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr9	115098179	115098180	chr9:115098180:G:A	rs10982530	G	A	G	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr9	115165008	115165009	chr9:115165009:A:G	rs76128178	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr9	115209875	115209876	chr9:115209876:C:T	rs1335357	C	T	T	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr9	115264160	115264161	chr9:115264161:G:A	rs76062121	G	A	G	Sox3.mouse_HMG_2	-18	0	-	0	0	.
chr9	115362909	115362910	chr9:115362910:C:T	rs148054871	C	T	c	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr9	115394373	115394374	chr9:115394374:G:C	chr9:115394374:G:C	G	C	G	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr9	115525548	115525549	chr9:115525549:C:T	rs145428565	C	T	C	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr9	115553361	115553362	chr9:115553362:C:T	rs12005078	C	T	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr9	115591817	115591818	chr9:115591818:A:G	rs1024028577	A	G	A	Sox3.mouse_HMG_2	22	0	-	0	0	.
chr9	115591835	115591836	chr9:115591836:T:C	rs73528142	T	C	T	Sox3.mouse_HMG_2	4	1	-	7.8571860685104795	1.4679046341325872	GATCAAAGTCAGTGAAA
chr9	115596633	115596634	chr9:115596634:G:A	rs7467290	G	A	G	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr9	115629928	115629929	chr9:115629929:T:C	rs4979570	T	C	T	Sox3.mouse_HMG_2	36	0	+	0	0	.
chr9	116404940	116404941	chr9:116404941:C:T	rs1858015	C	T	T	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr9	116697563	116697564	chr9:116697564:G:A	rs73515229	G	A	G	Sox3.mouse_HMG_2	-15	0	-	0	0	.
chr9	116747886	116747887	chr9:116747887:G:A	rs894207	G	A	A	Sox3.mouse_HMG_2	16	1	-	5.043482078872413	6.646475128532863	TTTCAATTTCAGGGATC
chr9	116952150	116952151	chr9:116952151:G:A	rs11789879	G	A	G	Sox3.mouse_HMG_2	15	1	+	4.37999154487277	4.813728996134111	TCTTAATGCTAGTGAGC
chr9	117095180	117095181	chr9:117095181:C:A	rs11791192	C	A	C	Sox3.mouse_HMG_2	7	1	-	4.514437943057535	3.388546729212289	ATTCCATGCCAGTGATA
chr9	117349020	117349021	chr9:117349021:T:C	rs7874694	T	C	C	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr9	117648927	117648928	chr9:117648928:T:C	rs10126004	T	C	C	Sox3.mouse_HMG_2	26	0	-	0	0	.
chr9	117648963	117648964	chr9:117648964:A:G	rs115116910	A	G	A	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr9	117848176	117848177	chr9:117848177:T:C	rs554353	T	C	T	Sox3.mouse_HMG_2	-11	0	+	0	0	.
chr9	118363467	118363468	chr9:118363468:T:C	rs10429475	T	C	C	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr9	118529465	118529466	chr9:118529466:G:A	rs7037164	G	A	A	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	119037224	119037225	chr9:119037225:A:G	rs10818269	A	G	A	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr9	119526827	119526828	chr9:119526828:T:C	rs1009471	T	C	C	Sox3.mouse_HMG_2	32	0	+	0	0	.
chr9	119651266	119651267	chr9:119651267:T:C	rs10818353	T	C	C	Sox3.mouse_HMG_2	5	1	-	5.0735903050562365	-1.3156911293216536	TTTCCATGCCATTGAAT
chr9	120243292	120243293	chr9:120243293:T:A	rs10984879	T	A	t	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr9	120384947	120384948	chr9:120384948:A:G	rs4836818	A	G	A	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr9	120394482	120394483	chr9:120394483:G:C	rs4410972	G	C	G	Sox3.mouse_HMG_2	35	0	-	0	0	.
chr9	120704049	120704050	chr9:120704050:G:C	rs7044226	G	C	C	Sox3.mouse_HMG_2	3	1	-	2.4587143590660094	-3.591804950823288	CCTCAATTTCATTTCTT
chr9	120853462	120853463	chr9:120853463:G:A	rs34674181	G	A	A	Sox3.mouse_HMG_2	9	1	-	3.0547681141276812	3.74742065699964	TAACAACTTCATTGTTG
chr9	120891710	120891711	chr9:120891711:A:G	rs540811297	A	G	A	Sox3.mouse_HMG_2	12	1	-	5.283084706701457	-0.7678824312293604	GCTCAATGCTACTGACT
chr9	120946385	120946386	chr9:120946386:T:A	rs10818489	T	A	T	Sox3.mouse_HMG_2	34	0	-	0	0	.
chr9	121211745	121211746	chr9:121211746:T:C	rs2078141	T	C	T	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr9	121273101	121273102	chr9:121273102:T:C	rs10739594	T	C	C	Sox3.mouse_HMG_2	4	1	-	5.853290867523139	-0.5359905668547524	AGTCAATTTCAGGGATA
chr9	121525510	121525511	chr9:121525511:T:C	rs7849996	T	C	T	Sox3.mouse_HMG_2	5	1	-	2.4721187089370167	-3.917162725440872	CATCAATGTGGGTGAAG
chr9	121915086	121915087	chr9:121915087:A:G	rs1018997565	A	G	A	Sox3.mouse_HMG_2	-6	0	+	0	0	.
chr9	121948023	121948024	chr9:121948024:T:C	rs10739603	T	C	T	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr9	122109860	122109861	chr9:122109861:T:C	rs944215	T	C	T	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr9	122533844	122533845	chr9:122533845:A:G	rs4837977	A	G	g	Sox3.mouse_HMG_2	4	1	+	1.2667476662104196	-5.122533768167467	GCTCAGTGTCTGTGATG
chr9	122567904	122567905	chr9:122567905:A:C	rs10985702	A	C	A	Sox3.mouse_HMG_2	25	0	+	0	0	.
chr9	123157314	123157315	chr9:123157315:G:A	rs62578996	G	A	G	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr9	123757788	123757789	chr9:123757789:T:C	rs9785285	T	C	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr9	124244066	124244067	chr9:124244067:C:G	rs10818936	C	G	C	Sox3.mouse_HMG_2	28	0	+	0	0	.
chr9	124259353	124259354	chr9:124259354:C:T	rs577664074	C	T	C	Sox3.mouse_HMG_2	-16	0	+	0	0	.
chr9	124259402	124259403	chr9:124259403:T:A	rs560174925	T	A	T	Sox3.mouse_HMG_2	33	0	+	0	0	.
chr9	124348743	124348744	chr9:124348744:G:A	rs4838168	G	A	G	Sox3.mouse_HMG_2	7	1	+	2.631314891708731	-3.997506603379327	GGTCAACGCTAGTGGGT
chr9	125053867	125053868	chr9:125053868:T:C	rs600310	T	C	T	Sox3.mouse_HMG_2	4	1	+	2.645065046777881	2.645065046777881	TAACTATGTCAGTGTTT
chr9	125842559	125842560	chr9:125842560:G:A	rs12339544	G	A	G	Sox3.mouse_HMG_2	0	1	+	4.251273899797654	2.55478160609499	GCTTAATGGCATTCATT
chr9	126001633	126001634	chr9:126001634:T:C	rs139310645	T	C	T	Sox3.mouse_HMG_2	27	0	+	0	0	.
chr9	126081849	126081850	chr9:126081850:C:T	rs76378088	C	T	C	Sox3.mouse_HMG_2	29	0	-	0	0	.
chr9	126081886	126081887	chr9:126081887:A:G	rs2416996	A	G	A	Sox3.mouse_HMG_2	-8	0	-	0	0	.
chr9	126307221	126307222	chr9:126307222:G:A	rs741027	G	A	A	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr9	126307249	126307250	chr9:126307250:C:T	rs74604600	C	T	C	Sox3.mouse_HMG_2	18	0	+	0	0	.
chr9	126320655	126320656	chr9:126320656:C:T	rs12552388	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr9	126339109	126339110	chr9:126339110:C:G	rs531599	C	G	C	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr9	126491120	126491121	chr9:126491121:C:G	rs72758795	C	G	C	Sox3.mouse_HMG_2	11	1	-	1.6737339044456707	-3.6301181176008406	CGTAAATGCTAGTGGAA
chr9	126491131	126491132	chr9:126491132:G:A	rs10117815	G	A	G	Sox3.mouse_HMG_2	0	1	-	1.6737339044456707	1.188598890191563	CGTAAATGCTAGTGGAA
chr9	126570812	126570813	chr9:126570813:T:A	rs182559180	T	A	T	Sox3.mouse_HMG_2	14	1	-	2.332987206979581	-1.6863943167690636	AATGAATGGCAGGGATG
chr9	126607119	126607120	chr9:126607120:A:C	rs62578123	A	C	A	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr9	126789186	126789187	chr9:126789187:A:G	rs2417038	A	G	G	Sox3.mouse_HMG_2	4	1	+	2.132681004420288	-4.2566004299576035	CACCAATGGTAGTAAAG
chr9	126804874	126804875	chr9:126804875:G:C	rs73668416	G	C	C	Sox3.mouse_HMG_2	-10	0	-	0	0	.
chr9	126999851	126999852	chr9:126999852:A:T	rs10760471	A	T	T	Sox3.mouse_HMG_2	16	1	+	2.5882281166971093	3.1635242328163056	TACCAATGAGAGTGATA
chr9	127050532	127050533	chr9:127050533:A:G	rs12551501	A	G	A	Sox3.mouse_HMG_2	19	0	+	0	0	.
chr9	127358227	127358228	chr9:127358228:G:A	rs7847781	G	A	A	Sox3.mouse_HMG_2	14	1	-	2.062258890483182	4.075405984323182	TGTCAGTGTCAGTGCTG
chr9	127556196	127556197	chr9:127556197:C:T	rs76295919	C	T	C	Sox3.mouse_HMG_2	24	0	+	0	0	.
chr9	127579617	127579618	chr9:127579618:A:C	rs74663557	A	C	A	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr9	127579627	127579628	chr9:127579628:C:T	rs1333437040	C	T	C	Sox3.mouse_HMG_2	-9	0	+	0	0	.
chr9	127827573	127827574	chr9:127827574:C:T	rs10760505	C	T	C	Sox3.mouse_HMG_2	20	0	-	0	0	.
chr9	127904057	127904058	chr9:127904058:T:C	rs12004868	T	C	T	Sox3.mouse_HMG_2	10	1	-	3.849998930534402	-3.0587558487808186	TATTACTGTTATTGAGA
chr9	127971426	127971427	chr9:127971427:C:T	rs4837216	C	T	C	Sox3.mouse_HMG_2	-1	0	-	0	0	.
chr9	128102022	128102023	chr9:128102023:G:A	rs118142698	G	A	G	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	128443305	128443306	chr9:128443306:G:A	rs74609777	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr9	128697518	128697519	chr9:128697519:C:G	rs7046249	C	G	C	Sox3.mouse_HMG_2	-19	0	-	0	0	.
chr9	129072302	129072303	chr9:129072303:G:A	rs75498374	G	A	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr9	129163470	129163471	chr9:129163471:A:G	rs944072	A	G	A	Sox3.mouse_HMG_2	15	1	-	2.6179905283721667	-1.1618088891336291	GTGCAATTTCAGCGATT
chr9	129438496	129438497	chr9:129438497:C:A	rs72766043	C	A	C	Sox3.mouse_HMG_2	29	0	+	0	0	.
chr9	129703527	129703528	chr9:129703528:T:G	rs4836668	T	G	G	Sox3.mouse_HMG_2	15	1	+	6.028871559193348	3.2917444144733228	GATCACTGGCAGTGGTA
chr9	129892320	129892321	chr9:129892321:A:G	rs1226029141	A	G	A	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr9	129910601	129910602	chr9:129910602:G:C	rs997218491	G	C	G	Sox3.mouse_HMG_2	26	0	+	0	0	.
chr9	129939491	129939492	chr9:129939492:A:G	rs80304535	A	G	A	Sox3.mouse_HMG_2	5	1	+	4.546161342575442	-1.8431200918024457	CCTCAATGTTAGTTTTG
chr9	129944884	129944885	chr9:129944885:T:C	rs7870884	T	C	T	Sox3.mouse_HMG_2	5	1	-	4.464151042528077	-1.925130391849812	TTTCAATGATAGTAAAT
chr9	130020159	130020160	chr9:130020160:G:A	rs12001851	G	A	G	Sox3.mouse_HMG_2	9	1	-	1.314276890296164	2.006929433168124	GATCTATGTCGTTGGTA
chr9	130116563	130116564	chr9:130116564:C:T	rs72759136	C	T	C	Sox3.mouse_HMG_2	7	1	-	1.0151519844135748	-5.613669510674479	GAGCTATGCCAGTGAGA
chr9	130191093	130191094	chr9:130191094:A:T	rs67623236	A	T	G	Sox3.mouse_HMG_2	4	1	+	0.7049782429267083	-6.203096984866348	GCTCAGTGCTTGTGATG
chr9	130276441	130276442	chr9:130276442:A:G	rs9657643	A	G	a	Sox3.mouse_HMG_2	-8	0	+	0	0	.
chr9	130295901	130295902	chr9:130295902:G:A	rs12348163	G	A	A	Sox3.mouse_HMG_2	17	0	-	0	0	.
chr9	130295917	130295918	chr9:130295918:C:A	rs7045548	C	A	A	Sox3.mouse_HMG_2	1	1	-	2.6855599674881634	1.9967243504543248	CGTTACTTCTATTGATA
chr9	130302390	130302391	chr9:130302391:C:T	rs16936966	C	T	C	Sox3.mouse_HMG_2	13	1	-	2.967662712911179	-3.083975791275133	CATCAGTTTTATCGAAA
chr9	130481906	130481907	chr9:130481907:G:T	rs480313	G	T	T	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr9	130483268	130483269	chr9:130483269:G:T	rs10901080	G	T	G	Sox3.mouse_HMG_2	-17	0	+	0	0	.
chr9	131132024	131132025	chr9:131132025:G:A	rs149140465	G	A	G	Sox3.mouse_HMG_2	11	1	+	2.9266753537842862	-1.6448087745489999	CATCAGTGCTAGTGGCG
chr9	131256816	131256817	chr9:131256817:C:T	rs1213752525	C	T	c	Sox3.mouse_HMG_2	34	0	+	0	0	.
chr9	131704371	131704372	chr9:131704372:C:G	rs1010619556	C	G	.	Sox3.mouse_HMG_2	-2	0	-	0	0	.
chr9	131759178	131759179	chr9:131759179:A:C	rs2987410	A	C	C	Sox3.mouse_HMG_2	-11	0	-	0	0	.
chr9	131828118	131828119	chr9:131828119:A:G	rs2987381	A	G	A	Sox3.mouse_HMG_2	12	1	-	5.090383097320588	-0.9605840406102284	CCTCCATGTTAGTGGTT
chr9	131828134	131828135	chr9:131828135:T:C	rs2987382	T	C	C	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr9	131916532	131916533	chr9:131916533:G:C	rs12555726	G	C	G	Sox3.mouse_HMG_2	31	0	-	0	0	.
chr9	132079836	132079837	chr9:132079837:T:C	chr9:132079837:T:C	T	C	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr9	132250479	132250480	chr9:132250480:C:G	rs144674862	C	G	C	Sox3.mouse_HMG_2	-2	0	+	0	0	.
chr9	132579614	132579615	chr9:132579615:G:C	rs431195	G	C	C	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr9	132579738	132579739	chr9:132579739:T:G	rs10122079	T	G	T	Sox3.mouse_HMG_2	-4	0	-	0	0	.
chr9	132847940	132847941	chr9:132847941:G:A	rs117561717	G	A	G	Sox3.mouse_HMG_2	24	0	-	0	0	.
chr9	132855936	132855937	chr9:132855937:C:T	rs117201409	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr9	133009418	133009419	chr9:133009419:T:G	rs1330292	T	G	G	Sox3.mouse_HMG_2	11	1	-	3.7034295698457127	2.971061676132486	GATCAATGTCAACGGTT
chr9	133018602	133018603	chr9:133018603:C:T	rs3011286	C	T	T	Sox3.mouse_HMG_2	-4	0	+	0	0	.
chr9	133026020	133026021	chr9:133026021:A:G	rs2905091	A	G	G	Sox3.mouse_HMG_2	-10	0	+	0	0	.
chr9	133167063	133167064	chr9:133167064:C:T	rs34187118	C	T	C	Sox3.mouse_HMG_2	-12	0	-	0	0	.
chr9	133252519	133252520	chr9:133252520:G:A	rs73660468	G	A	g	Sox3.mouse_HMG_2	-19	0	+	0	0	.
chr9	133252568	133252569	chr9:133252569:A:C	rs34039247	A	C	a	Sox3.mouse_HMG_2	30	0	+	0	0	.
chr9	133309564	133309565	chr9:133309565:C:A	rs878904399	C	A	-	Sox3.mouse_HMG_2	-7	0	-	0	0	.
chr9	133437562	133437563	chr9:133437563:T:C	rs3780809	T	C	T	Sox3.mouse_HMG_2	21	0	-	0	0	.
chr9	133647152	133647153	chr9:133647153:T:C	rs2519154	T	C	T	Sox3.mouse_HMG_2	2	1	-	4.632647138401052	2.760429247504697	GAACAATTTGAGTGAGA
chr9	133706898	133706899	chr9:133706899:G:A	rs4979632	G	A	G	Sox3.mouse_HMG_2	27	0	-	0	0	.
chr9	133735442	133735443	chr9:133735443:C:T	rs60734798	C	T	C	Sox3.mouse_HMG_2	-16	0	-	0	0	.
chr9	133765628	133765629	chr9:133765629:C:T	rs591866	C	T	T	Sox3.mouse_HMG_2	-9	0	-	0	0	.
chr9	134037773	134037774	chr9:134037774:T:C	rs112892449	T	C	T	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr9	134349005	134349006	chr9:134349006:G:C	rs180886878	G	C	G	Sox3.mouse_HMG_2	-12	0	+	0	0	.
chr9	134993822	134993823	chr9:134993823:C:T	rs77690949	C	T	C	Sox3.mouse_HMG_2	32	0	-	0	0	.
chr9	135148728	135148729	chr9:135148729:G:T	rs17039788	G	T	T	Sox3.mouse_HMG_2	-20	0	-	0	0	.
chr9	135485586	135485587	chr9:135485587:G:A	rs3827827	G	A	G	Sox3.mouse_HMG_2	-15	0	+	0	0	.
chr9	135689165	135689166	chr9:135689166:T:C	rs62579818	T	C	t	Sox3.mouse_HMG_2	-5	0	-	0	0	.
chr9	135817150	135817151	chr9:135817151:G:A	rs36056648	G	A	G	Sox3.mouse_HMG_2	25	0	-	0	0	.
chr9	135974989	135974990	chr9:135974990:C:T	rs11789650	C	T	C	Sox3.mouse_HMG_2	-17	0	-	0	0	.
chr9	136020760	136020761	chr9:136020761:G:A	rs73551126	G	A	G	Sox3.mouse_HMG_2	7	1	+	1.1657123774217342	-5.463109117666324	GGTCAATGGCACAGAAT
chr9	136588838	136588839	chr9:136588839:T:C	rs147150131	T	C	T	Sox3.mouse_HMG_2	5	1	-	1.0102045996806754	-5.379076834697213	CCTCCATGGCTTTGATG
chr9	136742015	136742016	chr9:136742016:G:A	rs115859942	G	A	-	Sox3.mouse_HMG_2	35	0	+	0	0	.
chr9	137030857	137030858	chr9:137030858:C:T	rs369993212	C	T	C	Sox3.mouse_HMG_2	-7	0	+	0	0	.
chr9	137030886	137030887	chr9:137030887:C:T	rs144843927	C	T	C	Sox3.mouse_HMG_2	22	0	+	0	0	.
chr9	137142808	137142809	chr9:137142809:C:G	rs4880216	C	G	G	Sox3.mouse_HMG_2	29	0	+	0	0	.