chr1	1153881	1153882	chr1:1153882:A:G	rs4970358	A	G	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr1	1646519	1646520	chr1:1646520:T:C	rs61774916	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr1	1646525	1646526	chr1:1646526:A:C	rs868663684	A	C	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	2367643	2367644	chr1:2367644:G:A	rs6704200	G	A	A	Sox3.mouse_HMG_1	9	1	-	1.5228039086972571	1.4870977838126875	AAAAAATGACATATTTT
chr1	3316706	3316707	chr1:3316707:T:C	rs116913227	T	C	C	Sox3.mouse_HMG_1	11	1	+	2.3582330112908867	-3.6992230976694658	AAACAGTGACATAGTGG
chr1	3316786	3316787	chr1:3316787:A:G	rs913497181	A	G	A	Sox3.mouse_HMG_1	10	1	+	2.161827098219535	-4.746418060751804	AAACATTGACATGGTGT
chr1	3616999	3617000	chr1:3617000:C:A	rs55728961	C	A	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr1	3805044	3805045	chr1:3805045:G:A	rs12127399	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	3878826	3878827	chr1:3878827:T:C	rs10737189	T	C	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr1	4588801	4588802	chr1:4588802:C:T	rs549150	C	T	T	Sox3.mouse_HMG_1	13	1	-	6.662332136721872	0.5542263466959552	CAGCAATACAATTGTAG
chr1	5090473	5090474	chr1:5090474:A:G	rs3101214	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr1	5184700	5184701	chr1:5184701:C:A	rs6603819	C	A	A	Sox3.mouse_HMG_1	10	1	-	4.2601502006609735	4.355460380465298	AAACAAGGACGGTGTTT
chr1	5239120	5239121	chr1:5239121:G:A	rs550558	G	A	A	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr1	5586141	5586142	chr1:5586142:G:A	rs12036552	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr1	5755080	5755081	chr1:5755081:A:C	rs61763323	A	C	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr1	5798239	5798240	chr1:5798240:A:C	rs7532629	A	C	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr1	5940217	5940218	chr1:5940218:T:C	rs57752624	T	C	T	Sox3.mouse_HMG_1	6	1	+	0.5878283783390842	-6.058262391289838	GATGAATGCCATTGTCT
chr1	6762349	6762350	chr1:6762350:T:A	rs35916265	T	A	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr1	6870359	6870360	chr1:6870360:C:A	rs74398293	C	A	A	Sox3.mouse_HMG_1	9	1	+	1.5091713862461469	0.05552699941704742	AAAAAAAAACATTGTGT
chr1	6954479	6954480	chr1:6954480:C:G	rs12239076	C	G	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	7055530	7055531	chr1:7055531:G:A	rs61780952	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	7078233	7078234	chr1:7078234:T:G	rs28627188	T	G	T	Sox3.mouse_HMG_1	10	1	-	1.9182203219002287	-4.646435132681035	AAACAGAAGTAGTGTTG
chr1	7176749	7176750	chr1:7176750:A:G	rs6680365	A	G	G	Sox3.mouse_HMG_1	4	1	+	3.96833604461826	-2.843989047358977	AAGCAATGACAATGTGA
chr1	7751900	7751901	chr1:7751901:A:G	rs9919220	A	G	a	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr1	7829880	7829881	chr1:7829881:C:T	rs2640908	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr1	8005468	8005469	chr1:8005469:C:A	rs55932258	C	A	C	Sox3.mouse_HMG_1	2	1	+	2.1572661060687666	8.58260098579008	AACAAATATAAGTGTTT
chr1	8005477	8005478	chr1:8005478:G:C	rs7554403	G	C	G	Sox3.mouse_HMG_1	11	1	+	2.1572661060687666	-1.7722113360307077	AACAAATATAAGTGTTT
chr1	8015873	8015874	chr1:8015874:A:G	rs2294889	A	G	A	Sox3.mouse_HMG_1	2	1	-	2.8732321555802907	2.3499840118157427	AATCATTTTTAGTGTTT
chr1	8028888	8028889	chr1:8028889:G:A	rs11800783	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr1	8126778	8126779	chr1:8126779:C:A	rs61774165	C	A	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	8135199	8135200	chr1:8135200:A:G	rs17032187	A	G	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr1	8214454	8214455	chr1:8214455:A:G	rs365938	A	G	G	Sox3.mouse_HMG_1	14	1	-	2.354260708448395	-3.755630206800312	TTACAAAAATATTGTAT
chr1	8266907	8266908	chr1:8266908:G:A	rs72862649	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr1	8396852	8396853	chr1:8396853:A:G	rs75969503	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	8536682	8536683	chr1:8536683:T:G	rs17032657	T	G	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr1	8938553	8938554	chr1:8938554:C:A	rs2781086	C	A	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr1	9085353	9085354	chr1:9085354:G:A	rs75313294	G	A	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr1	9086280	9086281	chr1:9086281:G:A	rs12402661	G	A	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr1	9243553	9243554	chr1:9243554:C:T	rs185938160	C	T	c	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr1	9274263	9274264	chr1:9274264:G:C	rs5015766	G	C	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr1	9274268	9274269	chr1:9274269:C:T	rs2311050	C	T	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr1	9321245	9321246	chr1:9321246:A:C	rs192526761	A	C	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	9443412	9443413	chr1:9443413:T:C	rs61784976	T	C	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr1	9461900	9461901	chr1:9461901:G:C	rs762088981	G	C	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	9728094	9728095	chr1:9728095:G:A	rs1141402	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr1	9908034	9908035	chr1:9908035:T:C	rs2083577	T	C	T	Sox3.mouse_HMG_1	8	1	-	1.9850376598920263	0.9586241848813903	AAACAAAGATTTTGTAG
chr1	9944549	9944550	chr1:9944550:G:A	rs12059092	G	A	G	Sox3.mouse_HMG_1	11	1	+	1.867124944920239	-1.867352482125508	AAACAAGAGCTGTGTTG
chr1	10063979	10063980	chr1:10063980:T:C	rs57216908	T	C	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	10189637	10189638	chr1:10189638:C:T	rs115029161	C	T	c	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr1	10553502	10553503	chr1:10553503:A:G	rs10864463	A	G	G	Sox3.mouse_HMG_1	12	1	-	2.6234447876989027	-3.583020797518949	TAACAATGTCGGTGTCA
chr1	10564410	10564411	chr1:10564411:A:G	rs6663898	A	G	A	Sox3.mouse_HMG_1	11	1	-	6.126381693924868	0.06892558496451628	AAACAAGGTAATTGTAA
chr1	10977376	10977377	chr1:10977377:G:A	rs112115136	G	A	g	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	10977389	10977390	chr1:10977390:A:G	rs56168930	A	G	g	Sox3.mouse_HMG_1	11	1	-	2.223921136226596	-3.833534972733757	AAGCAATTCTCTTGTCT
chr1	11012158	11012159	chr1:11012159:T:G	rs774558919	T	G	t	Sox3.mouse_HMG_1	9	1	+	11.068029997678552	5.067092116012688	GAACAAAGTTATTGTTT
chr1	11182737	11182738	chr1:11182738:A:T	rs72871498	A	T	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr1	11187962	11187963	chr1:11187963:C:T	rs12122605	C	T	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr1	11498143	11498144	chr1:11498144:G:C	rs7537387	G	C	C	Sox3.mouse_HMG_1	0	1	-	4.175123690379057	4.391898537269717	CAACAATTGCAGTGAAG
chr1	11979870	11979871	chr1:11979871:G:C	rs564944035	G	C	g	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr1	12096178	12096179	chr1:12096179:A:G	rs11121855	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.6274766183866676	-5.098656858915788	AGCCAATTATATTGATG
chr1	12269723	12269724	chr1:12269724:T:C	rs147453259	T	C	T	Sox3.mouse_HMG_1	10	1	-	6.1155286808207165	-0.7927164781506225	GGAAAATACTATTGTTT
chr1	12437881	12437882	chr1:12437882:G:A	rs1403278786	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr1	12573805	12573806	chr1:12573806:C:T	rs147989946	C	T	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr1	12728402	12728403	chr1:12728403:T:C	rs142843592	T	C	T	Sox3.mouse_HMG_1	0	1	-	2.2382816174276368	0.8654649519660984	AAACTATAATATAGTGG
chr1	13227968	13227969	chr1:13227969:C:T	rs373542647	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr1	13500484	13500485	chr1:13500485:C:A	rs354573	C	A	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr1	13965814	13965815	chr1:13965815:T:C	rs1997780	T	C	C	Sox3.mouse_HMG_1	4	1	-	3.0409366747784885	-3.7713884171987457	AAACAATGTAATTCAAT
chr1	14015380	14015381	chr1:14015381:C:T	rs16853407	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	14016068	14016069	chr1:14016069:G:T	rs140548534	G	T	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr1	14037189	14037190	chr1:14037190:G:A	rs7527265	G	A	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	14037206	14037207	chr1:14037207:A:G	rs142450209	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.163780346187611	-4.562353131114845	CTACAATACTAGTTTTA
chr1	14055808	14055809	chr1:14055809:A:G	rs72861223	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr1	14085310	14085311	chr1:14085311:T:C	rs72861288	T	C	T	Sox3.mouse_HMG_1	12	1	+	2.7187530271478146	-3.4877125580700366	AATCAATTTCAGTGTAC
chr1	14091952	14091953	chr1:14091953:T:C	rs10928004	T	C	t	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr1	14113796	14113797	chr1:14113797:A:G	rs12026570	A	G	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	14113798	14113799	chr1:14113799:A:T	rs12026571	A	T	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr1	14397248	14397249	chr1:14397249:A:G	rs61125940	A	G	A	Sox3.mouse_HMG_1	4	1	+	3.5523544532364273	-3.259970638740807	GAACAATGGAAGTTTCT
chr1	14417475	14417476	chr1:14417476:A:G	rs4573512	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr1	14815444	14815445	chr1:14815445:G:A	rs76100808	G	A	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr1	15018439	15018440	chr1:15018440:G:A	rs938252	G	A	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	15262903	15262904	chr1:15262904:A:G	rs113381127	A	G	a	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr1	15397536	15397537	chr1:15397537:A:G	rs2253372	A	G	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr1	15927009	15927010	chr1:15927010:A:G	rs17387101	A	G	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	16210855	16210856	chr1:16210856:A:G	rs558906191	A	G	A	Sox3.mouse_HMG_1	8	1	+	4.275715367691023	3.2493018926803874	GAACAGTGACAGTGTCA
chr1	16499753	16499754	chr1:16499754:G:A	rs78509555	G	A	.	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr1	16618253	16618254	chr1:16618254:A:G	rs12048800	A	G	.	Sox3.mouse_HMG_1	4	1	-	5.317769737819134	4.9067644493353555	TAACTATGTCAGTGTTC
chr1	16629648	16629649	chr1:16629649:T:C	rs866757186	T	C	.	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr1	16723458	16723459	chr1:16723459:C:T	rs16854927	C	T	.	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr1	16727520	16727521	chr1:16727521:C:T	rs1301043315	C	T	.	Sox3.mouse_HMG_1	3	1	+	2.129307309453854	-3.853468808680472	GACCCATGCAATTGTTG
chr1	16727526	16727527	chr1:16727527:A:C	rs866578967	A	C	.	Sox3.mouse_HMG_1	9	1	+	2.129307309453854	3.5829516962829535	GACCCATGCAATTGTTG
chr1	16869719	16869720	chr1:16869720:C:T	rs147994864	C	T	c	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr1	16905755	16905756	chr1:16905756:C:G	rs575457826	C	G	.	Sox3.mouse_HMG_1	0	1	-	3.2274506235031497	3.01067577661249	GAACAAAGACAGGGTTT
chr1	17196325	17196326	chr1:17196326:C:T	rs754171	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	17204858	17204859	chr1:17204859:C:T	rs4920571	C	T	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr1	17282049	17282050	chr1:17282050:C:G	rs3766301	C	G	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr1	17689049	17689050	chr1:17689050:A:G	rs34490715	A	G	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr1	17908196	17908197	chr1:17908197:C:T	rs11203230	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr1	18047244	18047245	chr1:18047245:T:C	rs1551478	T	C	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr1	18117189	18117190	chr1:18117190:G:A	rs114046210	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr1	18448198	18448199	chr1:18448199:A:G	rs2946535	A	G	G	Sox3.mouse_HMG_1	10	1	+	6.068661271688712	-0.839583887282627	AGACAATGGCATTGAAT
chr1	18497408	18497409	chr1:18497409:C:T	rs17351864	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr1	18972582	18972583	chr1:18972583:C:T	rs111351309	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr1	19186264	19186265	chr1:19186265:T:C	rs16862585	T	C	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr1	19505574	19505575	chr1:19505575:A:G	rs115908591	A	G	A	Sox3.mouse_HMG_1	2	1	+	5.610986115391034	1.2030511364105745	AAACAATGGAAATGATG
chr1	19552329	19552330	chr1:19552330:C:T	rs116833051	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	20008135	20008136	chr1:20008136:C:T	rs1395470	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr1	20071549	20071550	chr1:20071550:A:G	rs513246	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	20322662	20322663	chr1:20322663:A:G	rs10916765	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr1	20404353	20404354	chr1:20404354:A:G	rs11577874	A	G	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr1	20733212	20733213	chr1:20733213:C:G	rs78491441	C	G	C	Sox3.mouse_HMG_1	7	1	-	3.464841997789765	-2.1558501371350083	AAAGAATGAAAGTGATG
chr1	21122188	21122189	chr1:21122189:G:T	rs9426649	G	T	G	Sox3.mouse_HMG_1	7	1	+	1.2242096218434888	-0.31333948289866603	AAACAATGACACATTTG
chr1	21538517	21538518	chr1:21538518:G:A	rs148777259	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr1	21538563	21538564	chr1:21538564:G:A	rs56754613	G	A	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr1	22254258	22254259	chr1:22254259:C:G	rs2744760	C	G	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr1	22254304	22254305	chr1:22254305:G:T	rs111501233	G	T	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr1	22268181	22268182	chr1:22268182:T:C	rs2505716	T	C	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr1	22268182	22268183	chr1:22268183:G:A	rs75868741	G	A	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	22834529	22834530	chr1:22834530:T:C	rs56089435	T	C	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr1	23224865	23224866	chr1:23224866:A:G	rs4655151	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr1	23290906	23290907	chr1:23290907:C:G	rs628290	C	G	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr1	23454045	23454046	chr1:23454046:G:A	rs652715	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr1	23554420	23554421	chr1:23554421:G:A	rs34671368	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr1	23757158	23757159	chr1:23757159:T:C	rs2076346	T	C	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr1	24028234	24028235	chr1:24028235:A:G	rs36111049	A	G	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	24151407	24151408	chr1:24151408:A:G	rs562568945	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr1	24289803	24289804	chr1:24289804:T:C	rs1572786	T	C	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr1	24443268	24443269	chr1:24443269:T:C	rs6697537	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr1	24477245	24477246	chr1:24477246:T:A	rs195732	T	A	t	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr1	24874321	24874322	chr1:24874322:T:G	rs3131523	T	G	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	24912797	24912798	chr1:24912798:T:C	rs16830141	T	C	t	Sox3.mouse_HMG_1	7	1	-	1.0603408243313512	1.556411144108662	CCACAATAGATGTGTTT
chr1	25461930	25461931	chr1:25461931:A:G	rs35189848	A	G	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr1	25461933	25461934	chr1:25461934:C:A	rs35346083	C	A	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr1	25568213	25568214	chr1:25568214:T:C	rs76969561	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr1	26175335	26175336	chr1:26175336:A:C	rs2783628	A	C	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	27392033	27392034	chr1:27392034:C:T	rs144148674	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr1	27626236	27626237	chr1:27626237:A:G	rs79478829	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	27724338	27724339	chr1:27724339:C:T	rs755827347	C	T	C	Sox3.mouse_HMG_1	8	1	+	2.223921136226596	2.5366603611371383	AAGCAATTCTCTTGTCT
chr1	27774209	27774210	chr1:27774210:T:C	rs2235191	T	C	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr1	28105887	28105888	chr1:28105888:T:C	rs536132	T	C	N	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	28236164	28236165	chr1:28236165:A:G	rs12154	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr1	28431502	28431503	chr1:28431503:A:G	rs544973504	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.394597305222716	-2.251493464406203	TAAAAATTGTATTGTAG
chr1	28580913	28580914	chr1:28580914:C:G	rs376671492	C	G	C	Sox3.mouse_HMG_1	3	1	+	1.9073158762613023	-4.999719143396352	GTACAATGGAACTGTAT
chr1	28693625	28693626	chr1:28693626:A:G	rs12044738	A	G	A	Sox3.mouse_HMG_1	10	1	+	4.7001270947153655	-2.208118064255973	AAGCAATTGTAGTTTTT
chr1	29298862	29298863	chr1:29298863:G:A	rs9426315	G	A	A	Sox3.mouse_HMG_1	8	1	+	1.6277247497068026	2.6541382247174377	GAACAATGGTAGTGCCC
chr1	29838921	29838922	chr1:29838922:A:C	rs12046763	A	C	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr1	29848720	29848721	chr1:29848721:C:A	rs34527566	C	A	C	Sox3.mouse_HMG_1	3	1	+	1.1139307157741403	-5.610782747089563	CAACAATGGCTGGGTTG
chr1	29880981	29880982	chr1:29880982:C:G	rs10458371	C	G	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr1	29996636	29996637	chr1:29996637:A:G	rs267693	A	G	G	Sox3.mouse_HMG_1	16	1	+	1.4315426998280354	1.8653741445491425	TAACAATGGATCTGTTA
chr1	30015164	30015165	chr1:30015165:A:G	rs428294	A	G	G	Sox3.mouse_HMG_1	2	1	+	0.1031095514937605	-4.3048254274867	GAACACTGGCATTGGAG
chr1	30597217	30597218	chr1:30597218:G:T	rs6665425	G	T	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr1	30676237	30676238	chr1:30676238:T:C	rs1188386	T	C	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr1	30695919	30695920	chr1:30695920:C:T	rs12119696	C	T	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	31010860	31010861	chr1:31010861:G:A	rs80279141	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	31364835	31364836	chr1:31364836:C:A	rs41263944	C	A	C	Sox3.mouse_HMG_1	7	1	-	1.5024997660847497	-0.03504933865740323	GAACAATGATCTTGGCT
chr1	31549824	31549825	chr1:31549825:T:C	rs894814905	T	C	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr1	31553852	31553853	chr1:31553853:C:T	rs10753254	C	T	c	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr1	32493455	32493456	chr1:32493456:T:C	rs886393744	T	C	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr1	32933970	32933971	chr1:32933971:A:C	rs185637506	A	C	A	Sox3.mouse_HMG_1	11	1	-	2.0354971955705534	-0.09248147129032691	GAACAATTCACTTCTTT
chr1	32936171	32936172	chr1:32936172:T:C	rs194637	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	33633108	33633109	chr1:33633109:T:C	rs189321889	T	C	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	33949435	33949436	chr1:33949436:G:T	rs571225	G	T	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr1	33949436	33949437	chr1:33949437:C:A	rs571226	C	A	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr1	34037933	34037934	chr1:34037934:T:C	rs67013011	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr1	34054443	34054444	chr1:34054444:A:G	rs2061843	A	G	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr1	34406099	34406100	chr1:34406100:A:G	rs741986	A	G	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	34692105	34692106	chr1:34692106:T:C	rs76893325	T	C	T	Sox3.mouse_HMG_1	6	1	+	9.250971001474548	2.6048802318456294	GAACAATGGCAGTGGTT
chr1	34840025	34840026	chr1:34840026:C:T	rs12127790	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	34840026	34840027	chr1:34840027:G:A	rs4320750	G	A	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr1	34863756	34863757	chr1:34863757:A:G	rs72657942	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	35774865	35774866	chr1:35774866:A:T	rs375598995	A	T	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	35809586	35809587	chr1:35809587:A:G	rs16822342	A	G	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr1	36083555	36083556	chr1:36083556:A:G	rs3754076	A	G	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr1	36135171	36135172	chr1:36135172:A:C	rs11577123	A	C	A	Sox3.mouse_HMG_1	10	1	+	0.3421133614261051	-6.222542093155157	AATCAATGACATGGGTG
chr1	36517074	36517075	chr1:36517075:C:T	rs75872741	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr1	36531246	36531247	chr1:36531247:T:A	rs6695117	T	A	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	37064274	37064275	chr1:37064275:C:A	rs140444682	C	A	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr1	37139525	37139526	chr1:37139526:G:A	rs55674657	G	A	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr1	37143978	37143979	chr1:37143979:A:T	rs113394532	A	T	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr1	37255386	37255387	chr1:37255387:C:T	rs115350642	C	T	C	Sox3.mouse_HMG_1	8	1	-	1.7571491639170405	2.7835626389276764	AGAAAATGGCATTTTTT
chr1	37476351	37476352	chr1:37476352:A:G	rs1395718	A	G	A	Sox3.mouse_HMG_1	5	1	+	0.5941977563468444	-6.13193572095561	GAACCATAGTAGTGGTA
chr1	37513171	37513172	chr1:37513172:T:C	rs4653296	T	C	T	Sox3.mouse_HMG_1	5	1	-	4.187056927709068	-2.539076549593389	ATACAATAGCATTCTAT
chr1	38172785	38172786	chr1:38172786:T:C	rs149180994	T	C	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr1	38221387	38221388	chr1:38221388:T:C	rs6685558	T	C	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	38306670	38306671	chr1:38306671:A:G	rs11210514	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr1	38730884	38730885	chr1:38730885:A:G	rs11211245	A	G	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr1	38874609	38874610	chr1:38874610:C:T	rs880303	C	T	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	39092099	39092100	chr1:39092100:T:C	rs260964	T	C	c	Sox3.mouse_HMG_1	12	1	+	6.152286834376238	-0.05417875084161394	GAGCAATGATAGTATTT
chr1	39155284	39155285	chr1:39155285:A:C	rs11205695	A	C	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	39782446	39782447	chr1:39782447:G:A	rs74879559	G	A	g	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr1	40032177	40032178	chr1:40032178:T:C	rs77237599	T	C	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr1	40449549	40449550	chr1:40449550:A:G	rs139017468	A	G	a	Sox3.mouse_HMG_1	14	1	-	4.272701889103753	-1.8371890261449544	AAACAAAAAAATTATTG
chr1	40567998	40567999	chr1:40567999:T:C	rs7515986	T	C	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	41245666	41245667	chr1:41245667:T:C	rs12130655	T	C	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr1	41334801	41334802	chr1:41334802:T:G	rs35464028	T	G	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr1	41613952	41613953	chr1:41613953:G:A	rs117047842	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr1	41871576	41871577	chr1:41871577:T:G	rs710229	T	G	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr1	41914134	41914135	chr1:41914135:T:A	rs72965235	T	A	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr1	42340935	42340936	chr1:42340936:G:T	rs573517022	G	T	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr1	42706150	42706151	chr1:42706151:T:C	rs6663618	T	C	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr1	42951478	42951479	chr1:42951479:T:G	rs4660691	T	G	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr1	43037260	43037261	chr1:43037261:T:C	rs841390	T	C	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr1	43542989	43542990	chr1:43542990:G:T	rs113024100	G	T	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr1	43585075	43585076	chr1:43585076:T:G	rs10789437	T	G	G	Sox3.mouse_HMG_1	13	1	-	5.7497490061790595	5.7497490061790595	CAACAATGCCAGTATAT
chr1	43921939	43921940	chr1:43921940:A:G	rs72888778	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr1	43921952	43921953	chr1:43921953:G:A	rs1636877	G	A	G	Sox3.mouse_HMG_1	11	1	+	1.3401219760030063	-2.3943554510427423	AAACACTTTTCGTGTTG
chr1	43941728	43941729	chr1:43941729:C:G	rs12737898	C	G	g	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr1	44032479	44032480	chr1:44032480:T:G	rs79421665	T	G	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr1	44033569	44033570	chr1:44033570:A:G	rs1978195	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr1	44040747	44040748	chr1:44040748:A:C	rs813642	A	C	A	Sox3.mouse_HMG_1	5	1	+	3.0920842136382003	-3.721060640653886	AAAAAAAATTAGTGTTT
chr1	44137027	44137028	chr1:44137028:A:G	rs2190441	A	G	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr1	44458778	44458779	chr1:44458779:G:A	rs12057674	G	A	A	Sox3.mouse_HMG_1	11	1	+	1.4953624468518347	-2.2391149801939125	GAACAATCACAGTGACT
chr1	44514542	44514543	chr1:44514543:A:G	rs17386059	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	44676403	44676404	chr1:44676404:A:T	rs72671982	A	T	A	Sox3.mouse_HMG_1	9	1	-	1.608465928596084	0.19052766665155224	CAACAAATCTATTGGTG
chr1	44676675	44676676	chr1:44676676:T:C	rs189124407	T	C	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr1	44924776	44924777	chr1:44924777:T:C	rs143035453	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	45093528	45093529	chr1:45093529:G:A	rs61788388	G	A	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr1	45273022	45273023	chr1:45273023:A:T	rs3121768	A	T	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr1	45447225	45447226	chr1:45447226:A:C	rs998199	A	C	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr1	45868583	45868584	chr1:45868584:A:C	rs11211208	A	C	A	Sox3.mouse_HMG_1	12	1	-	3.14274045433264	-3.425387616334982	AAACAATGACACTCTAA
chr1	45893189	45893190	chr1:45893190:G:A	rs34444543	G	A	A	Sox3.mouse_HMG_1	11	1	+	2.441905401026089	-1.2925720260196583	AAACATTTTCAGTTTTT
chr1	46386628	46386629	chr1:46386629:A:G	rs116775331	A	G	A	Sox3.mouse_HMG_1	0	1	+	1.6095172337652894	0.2367005683037504	AAACTATGTCCTTGTAA
chr1	46396234	46396235	chr1:46396235:A:G	rs2145408	A	G	G	Sox3.mouse_HMG_1	5	1	+	6.2983634880144646	-0.42776998928799137	AAACAACAGTATTGTCA
chr1	46553678	46553679	chr1:46553679:A:T	rs36045414	A	T	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr1	46690048	46690049	chr1:46690049:T:C	rs3766221	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	46690060	46690061	chr1:46690061:A:G	rs3766220	A	G	A	Sox3.mouse_HMG_1	4	1	+	6.958624335954381	0.1462992439771461	GGACAGTGTCATTGTTT
chr1	47408011	47408012	chr1:47408012:C:T	rs2405922	C	T	C	Sox3.mouse_HMG_1	3	1	+	0.6651335320137406	-5.317642586120582	CACCAAAAGCAGTGTTG
chr1	47796702	47796703	chr1:47796703:T:C	rs181022092	T	C	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr1	48071125	48071126	chr1:48071126:A:G	rs584425	A	G	A	Sox3.mouse_HMG_1	14	1	-	4.308989143808137	-1.80090177144057	CAATAATTTCATTGTGA
chr1	48098393	48098394	chr1:48098394:C:T	rs11205440	C	T	C	Sox3.mouse_HMG_1	13	1	-	4.957787820690285	-1.1503179693356307	AAACAACAGAAGTGTAT
chr1	48200837	48200838	chr1:48200838:T:C	rs519767	T	C	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr1	48200851	48200852	chr1:48200852:C:T	rs519720	C	T	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr1	48208018	48208019	chr1:48208019:A:G	rs535295	A	G	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	48695394	48695395	chr1:48695395:C:T	rs75111792	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr1	49306779	49306780	chr1:49306780:A:T	rs241473	A	T	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr1	50175983	50175984	chr1:50175984:G:A	rs78331461	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr1	50775178	50775179	chr1:50775179:C:T	rs80326064	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr1	51512692	51512693	chr1:51512693:A:G	rs74082612	A	G	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr1	51534658	51534659	chr1:51534659:C:T	rs56280508	C	T	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr1	51607968	51607969	chr1:51607969:A:C	rs80071487	A	C	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr1	51661677	51661678	chr1:51661678:T:C	rs140004088	T	C	.	Sox3.mouse_HMG_1	9	1	+	5.925696645455976	5.961402770340546	AAACATTGATATTTTTG
chr1	52056683	52056684	chr1:52056684:C:T	rs2783190	C	T	C	Sox3.mouse_HMG_1	1	1	+	1.2814149669773869	2.0289309369642976	TCACAACAGCAGTGTTG
chr1	52056689	52056690	chr1:52056690:A:G	rs114577316	A	G	A	Sox3.mouse_HMG_1	7	1	+	1.2814149669773869	1.7774852867546982	TCACAACAGCAGTGTTG
chr1	52112069	52112070	chr1:52112070:T:G	rs72909945	T	G	t	Sox3.mouse_HMG_1	2	1	-	6.9513221424959895	0.5259872627746783	AAACAATTACAGTGACT
chr1	52748209	52748210	chr1:52748210:C:T	rs9988469	C	T	c	Sox3.mouse_HMG_1	0	1	-	4.582650963341768	5.955467628803307	GCACAATTACATTATTG
chr1	52748211	52748212	chr1:52748212:T:C	rs9988539	T	C	c	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr1	53389550	53389551	chr1:53389551:A:C	rs1766635	A	C	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr1	53480811	53480812	chr1:53480812:A:G	rs1288622	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr1	53602342	53602343	chr1:53602343:C:T	rs4927012	C	T	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	54277945	54277946	chr1:54277946:A:T	rs144368757	A	T	A	Sox3.mouse_HMG_1	6	1	-	1.6752275139005142	-5.233227520195897	AAGCAGTGGCATTTTTT
chr1	54850267	54850268	chr1:54850268:G:T	rs11555500	G	T	G	Sox3.mouse_HMG_1	8	1	+	13.12095947661861	13.327551713160714	AAACAATGGCACTGTTT
chr1	54880032	54880033	chr1:54880033:C:A	rs12042996	C	A	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	54926794	54926795	chr1:54926795:T:C	rs67281988	T	C	C	Sox3.mouse_HMG_1	2	1	-	9.604654839334573	5.196719860354111	CTACAATGGCAGTGTTG
chr1	55016417	55016418	chr1:55016418:G:A	rs2479396	G	A	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	55172401	55172402	chr1:55172402:G:A	rs1165222	G	A	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr1	55189143	55189144	chr1:55189144:T:C	rs75595726	T	C	T	Sox3.mouse_HMG_1	11	1	+	2.7182989429528996	-3.3391571660074533	TAACAATTCCATTCATA
chr1	55211370	55211371	chr1:55211371:T:C	rs1874773	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	55334096	55334097	chr1:55334097:C:T	rs207164	C	T	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr1	55359229	55359230	chr1:55359230:C:T	rs4926680	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr1	55446510	55446511	chr1:55446511:C:T	rs1986518	C	T	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr1	55490936	55490937	chr1:55490937:G:A	rs58595315	G	A	G	Sox3.mouse_HMG_1	12	1	+	2.7313803037258393	3.71131630076035	GAACAAGAACAGGGTTT
chr1	55548733	55548734	chr1:55548734:T:C	rs72667842	T	C	T	Sox3.mouse_HMG_1	11	1	+	5.799198039667733	-0.2582580692926198	CAAAAATACCATTGTAG
chr1	55633309	55633310	chr1:55633310:T:C	rs72912611	T	C	T	Sox3.mouse_HMG_1	12	1	+	1.7248053667219176	-4.481660218495934	GGACAATACTTTTGTCT
chr1	55695230	55695231	chr1:55695231:G:C	rs12566150	G	C	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr1	55738764	55738765	chr1:55738765:A:C	rs1165514	A	C	C	Sox3.mouse_HMG_1	13	1	+	2.595502121609639	2.595502121609639	ACACAATATAAGTATTG
chr1	55773342	55773343	chr1:55773343:A:T	rs12095642	A	T	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr1	55869758	55869759	chr1:55869759:C:G	rs10888942	C	G	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr1	55894052	55894053	chr1:55894053:T:C	rs6684334	T	C	T	Sox3.mouse_HMG_1	10	1	-	1.916623639684016	-4.991621519287324	TAACTATGAAAGTTTTT
chr1	55975079	55975080	chr1:55975080:T:C	rs12562374	T	C	T	Sox3.mouse_HMG_1	5	1	-	0.8085450803777329	-5.917588396924725	GAGTAATGTCTTTGTTT
chr1	56069288	56069289	chr1:56069289:A:G	rs881683	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr1	56137528	56137529	chr1:56137529:G:A	rs12132426	G	A	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr1	56138477	56138478	chr1:56138478:G:A	rs1890347	G	A	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr1	56284693	56284694	chr1:56284694:C:T	rs12118755	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr1	56309173	56309174	chr1:56309174:A:G	rs12731002	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	56334211	56334212	chr1:56334212:T:G	chr1:56334212:T:G	T	G	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr1	56385286	56385287	chr1:56385287:T:C	rs72662232	T	C	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr1	56527518	56527519	chr1:56527519:T:C	rs57966457	T	C	T	Sox3.mouse_HMG_1	2	1	-	2.6579300255763725	-1.7500049534040898	TAACAATAGAAATGATA
chr1	56562115	56562116	chr1:56562116:A:G	rs12058536	A	G	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr1	56678312	56678313	chr1:56678313:A:G	rs2796498	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr1	56715564	56715565	chr1:56715565:T:C	rs706467	T	C	C	Sox3.mouse_HMG_1	9	1	-	5.1859998248626225	0.6030002051412925	GAACAATAAAATAATTT
chr1	56799844	56799845	chr1:56799845:T:C	rs1935556	T	C	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr1	56800039	56800040	chr1:56800040:C:A	rs147482671	C	A	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr1	56927531	56927532	chr1:56927532:C:T	rs911247	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr1	56968537	56968538	chr1:56968538:A:G	rs61767010	A	G	G	Sox3.mouse_HMG_1	14	1	-	2.773510579733845	-3.3363803355148622	AAACTGTTAAATTGTTA
chr1	56968559	56968560	chr1:56968560:C:T	rs61767011	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr1	57272252	57272253	chr1:57272253:A:T	rs12136813	A	T	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr1	57491149	57491150	chr1:57491150:T:C	rs9436132	T	C	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr1	57719444	57719445	chr1:57719445:G:A	rs68107934	G	A	A	Sox3.mouse_HMG_1	11	1	-	2.013733546325164	8.071189655285519	AAACAATATCACTGAGG
chr1	57909153	57909154	chr1:57909154:T:G	rs1202800	T	G	.	Sox3.mouse_HMG_1	15	1	+	0.8571129571539728	-3.7093059004520623	GTACAAAACAAGTGTTG
chr1	58149258	58149259	chr1:58149259:G:T	rs12758928	G	T	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	58388036	58388037	chr1:58388037:C:G	rs6692286	C	G	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr1	58652983	58652984	chr1:58652984:T:G	rs232874	T	G	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr1	58855479	58855480	chr1:58855480:C:A	rs116728140	C	A	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr1	58883897	58883898	chr1:58883898:C:T	rs12239208	C	T	C	Sox3.mouse_HMG_1	13	1	-	9.931292245263906	3.823186455237988	GAACAAAGGCATTGTTG
chr1	59229348	59229349	chr1:59229349:A:C	rs183772623	A	C	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr1	59379270	59379271	chr1:59379271:A:G	rs72911700	A	G	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr1	59434381	59434382	chr1:59434382:G:C	rs564150450	G	C	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr1	59491246	59491247	chr1:59491247:A:G	rs834672	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	59504274	59504275	chr1:59504275:A:G	rs11207462	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.1371453528197355	-3.5889881244827224	AACCAATAAACGTGTTT
chr1	59557638	59557639	chr1:59557639:A:G	rs74961816	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	59689817	59689818	chr1:59689818:G:A	rs72666283	G	A	G	Sox3.mouse_HMG_1	2	1	+	3.725493551361261	8.133428530341721	AAGCAATGTCATTGAGA
chr1	59689847	59689848	chr1:59689848:A:G	rs11580721	A	G	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr1	59995242	59995243	chr1:59995243:T:A	rs641467	T	A	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr1	60133164	60133165	chr1:60133165:G:A	rs12091672	G	A	G	Sox3.mouse_HMG_1	3	1	-	5.011983626070272	-0.9707924920640496	AAACCATGCCATTTTTG
chr1	61116873	61116874	chr1:61116874:T:G	rs6693597	T	G	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr1	61215278	61215279	chr1:61215279:A:C	rs12565339	A	C	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	61259865	61259866	chr1:61259866:G:C	rs332836	G	C	C	Sox3.mouse_HMG_1	9	1	-	3.2681002185556194	-2.7685437879948127	CAACAATGGCTTTATTA
chr1	61437286	61437287	chr1:61437287:G:A	rs375348791	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr1	61477620	61477621	chr1:61477621:G:A	rs12119273	G	A	g	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr1	61477632	61477633	chr1:61477633:G:A	rs75713973	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr1	61506454	61506455	chr1:61506455:G:A	rs138541261	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	61506475	61506476	chr1:61506476:A:G	rs1328653899	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.962193535059257	-1.0952625739010957	AAATAATTCTATAGTTG
chr1	61723464	61723465	chr1:61723465:A:T	chr1:61723465:A:T	A	T	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr1	61741581	61741582	chr1:61741582:A:G	rs7551399	A	G	G	Sox3.mouse_HMG_1	1	1	+	6.554071522847184	2.226638179444493	AATCAATCACAGTGTTT
chr1	62011402	62011403	chr1:62011403:C:A	rs12567320	C	A	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr1	62069181	62069182	chr1:62069182:G:T	rs6661862	G	T	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr1	62070946	62070947	chr1:62070947:C:G	rs6668421	C	G	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr1	63129024	63129025	chr1:63129025:T:C	rs66538437	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr1	64120639	64120640	chr1:64120640:T:C	rs2762850	T	C	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr1	64120659	64120660	chr1:64120660:T:C	rs12129247	T	C	C	Sox3.mouse_HMG_1	6	1	+	0.5252189735040786	-6.120871796124842	TAACAATGGCACTGCAG
chr1	64196740	64196741	chr1:64196741:A:G	rs12731793	A	G	A	Sox3.mouse_HMG_1	6	1	-	10.1455804743698	3.4994897047408817	AAACAATGTTAGTGCTG
chr1	64687255	64687256	chr1:64687256:A:G	rs75681619	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr1	64687257	64687258	chr1:64687258:C:T	rs2375523	C	T	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr1	64911476	64911477	chr1:64911477:G:A	rs61784740	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	65022305	65022306	chr1:65022306:T:A	rs1766963	T	A	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr1	65034984	65034985	chr1:65034985:G:A	rs144207792	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	65626665	65626666	chr1:65626666:A:G	rs11208690	A	G	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr1	65847113	65847114	chr1:65847114:A:G	rs4133072	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr1	65964295	65964296	chr1:65964296:G:T	rs1318474	G	T	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr1	66134124	66134125	chr1:66134125:G:A	rs640352	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr1	66156232	66156233	chr1:66156233:G:T	rs594094	G	T	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	66181060	66181061	chr1:66181061:C:T	rs147257739	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr1	66181096	66181097	chr1:66181097:C:A	rs782329	C	A	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr1	66183219	66183220	chr1:66183220:C:T	rs524897	C	T	C	Sox3.mouse_HMG_1	9	1	+	3.3691106775931736	3.333404552708605	GTAGAATTACAGTGTTT
chr1	66253413	66253414	chr1:66253414:C:G	rs182789243	C	G	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr1	66253419	66253420	chr1:66253420:T:C	rs536804366	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr1	66371597	66371598	chr1:66371598:C:T	rs150971744	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr1	66462448	66462449	chr1:66462449:G:A	rs1067001	G	A	G	Sox3.mouse_HMG_1	11	1	+	1.4765504936640044	-2.257926933381743	AGACAATGGTGGTGTCT
chr1	66562730	66562731	chr1:66562731:A:G	rs1856319	A	G	G	Sox3.mouse_HMG_1	11	1	-	3.9312038458017353	-2.1262522631586167	GAGCAATTCAATTTTTT
chr1	66596174	66596175	chr1:66596175:A:G	chr1:66596175:A:G	A	G	A	Sox3.mouse_HMG_1	11	1	-	2.559866083546006	-3.497590025414347	AAGCTATAACATTGGTT
chr1	66747889	66747890	chr1:66747890:T:G	rs628655	T	G	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr1	67058870	67058871	chr1:67058871:A:C	rs1414784950	A	C	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr1	67058918	67058919	chr1:67058919:G:A	rs61780059	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr1	67065267	67065268	chr1:67065268:C:T	rs6680264	C	T	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr1	67089088	67089089	chr1:67089089:G:T	rs60887577	G	T	G	Sox3.mouse_HMG_1	3	1	-	0.6293674483523866	-6.095346014511313	GAGCAATGCCATACTTG
chr1	67213309	67213310	chr1:67213310:T:C	rs790633	T	C	C	Sox3.mouse_HMG_1	10	1	-	1.5271047257786559	-5.381140433192682	GAACAATTACACTATTC
chr1	67233570	67233571	chr1:67233571:T:C	rs11804284	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr1	67282078	67282079	chr1:67282079:A:G	rs11209035	A	G	G	Sox3.mouse_HMG_1	1	1	+	9.873953899327812	5.546520555925122	AAGCAATGGCATTGTAA
chr1	67365597	67365598	chr1:67365598:G:A	rs78096113	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	67370990	67370991	chr1:67370991:G:A	rs72678546	G	A	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr1	67393684	67393685	chr1:67393685:C:T	rs746151263	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	67462017	67462018	chr1:67462018:G:A	rs12136231	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	67462026	67462027	chr1:67462027:A:G	rs10458560	A	G	A	Sox3.mouse_HMG_1	1	1	+	6.159800066659852	1.8323667232571579	CAACAATCCCATTGTCA
chr1	67466287	67466288	chr1:67466288:C:A	rs75645855	C	A	C	Sox3.mouse_HMG_1	15	1	+	1.520969032048895	2.3266272080519075	GAGCAATTGGATTGTCT
chr1	67585453	67585454	chr1:67585454:A:G	rs787540	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.015470748840406	-3.7106627284620495	GAACAATGGCAGACTTG
chr1	67588275	67588276	chr1:67588276:A:G	rs2050839	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	67588281	67588282	chr1:67588282:G:A	rs787514	G	A	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr1	67690693	67690694	chr1:67690694:C:A	rs76477672	C	A	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr1	67766036	67766037	chr1:67766037:T:C	rs114068244	T	C	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr1	67922428	67922429	chr1:67922429:G:A	rs72928849	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	67957617	67957618	chr1:67957618:G:A	rs1033914604	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	68176289	68176290	chr1:68176290:T:C	rs890780099	T	C	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr1	68377422	68377423	chr1:68377423:G:C	rs74551812	G	C	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr1	68518642	68518643	chr1:68518643:C:A	rs78522270	C	A	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr1	68703879	68703880	chr1:68703880:C:T	rs1492057	C	T	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr1	68955508	68955509	chr1:68955509:T:A	rs77815604	T	A	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr1	69166897	69166898	chr1:69166898:T:C	rs12567267	T	C	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr1	69425630	69425631	chr1:69425631:C:G	rs4650266	C	G	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	69585760	69585761	chr1:69585761:T:G	rs1271928	T	G	G	Sox3.mouse_HMG_1	1	1	-	1.771285431885659	-3.86656946437546	AAAGGATGCAAGTGTTT
chr1	70297650	70297651	chr1:70297651:C:G	rs138692440	C	G	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr1	70546917	70546918	chr1:70546918:G:A	rs6675749	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr1	70922450	70922451	chr1:70922451:A:G	rs6424412	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr1	71020149	71020150	chr1:71020150:G:A	rs2300169	G	A	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr1	71025805	71025806	chr1:71025806:G:A	rs10399705	G	A	G	Sox3.mouse_HMG_1	2	1	+	1.5887753993371263	5.996710378317587	AAGCAGTAAAATTGTGG
chr1	71658020	71658021	chr1:71658021:C:T	rs1537716	C	T	C	Sox3.mouse_HMG_1	3	1	+	2.4932798031426957	-3.4894963149916256	TAACAATTCAAATGTCA
chr1	71834795	71834796	chr1:71834796:C:T	chr1:71834796:C:T	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr1	71834818	71834819	chr1:71834819:C:T	rs517901	C	T	T	Sox3.mouse_HMG_1	9	1	+	5.0790947487278535	5.043388623843286	TTACAATAACAGAGTTT
chr1	72285868	72285869	chr1:72285869:A:G	rs2613499	A	G	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr1	73887410	73887411	chr1:73887411:T:C	rs12091914	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr1	74681313	74681314	chr1:74681314:A:C	rs56317013	A	C	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr1	75315093	75315094	chr1:75315094:C:T	rs11163095	C	T	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr1	75502092	75502093	chr1:75502093:C:T	rs12401888	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr1	75724122	75724123	chr1:75724123:G:C	rs538796144	G	C	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr1	75925251	75925252	chr1:75925252:A:G	rs1689270	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr1	76292857	76292858	chr1:76292858:T:C	rs10873872	T	C	T	Sox3.mouse_HMG_1	7	1	-	6.433468384978709	6.929538704756021	AAACAATAATTTTGGTT
chr1	76366990	76366991	chr1:76366991:G:T	rs12075208	G	T	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr1	76388635	76388636	chr1:76388636:T:G	rs10873883	T	G	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	76939261	76939262	chr1:76939262:C:T	rs894269880	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr1	76939266	76939267	chr1:76939267:G:A	rs117806998	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	77539043	77539044	chr1:77539044:A:G	rs181231170	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr1	77548777	77548778	chr1:77548778:A:G	rs76320690	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	77703072	77703073	chr1:77703073:C:A	rs12021502	C	A	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr1	77755993	77755994	chr1:77755994:T:C	rs7535781	T	C	C	Sox3.mouse_HMG_1	3	1	-	1.831117322547529	1.648795765753575	AAAAAATTGCATAGTAT
chr1	78171194	78171195	chr1:78171195:A:T	rs942099	A	T	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	78252165	78252166	chr1:78252166:G:A	rs2882801	G	A	G	Sox3.mouse_HMG_1	11	1	+	1.8899759879014941	-1.8445014391442527	AAACAACAGACGTGTTT
chr1	78340137	78340138	chr1:78340138:G:A	rs116839537	G	A	G	Sox3.mouse_HMG_1	8	1	+	3.0770262619722804	4.103439736982916	GAAAAATAGCATTATTA
chr1	78526685	78526686	chr1:78526686:A:T	rs145111457	A	T	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr1	78737459	78737460	chr1:78737460:T:G	rs2801030	T	G	G	Sox3.mouse_HMG_1	0	1	-	3.1761894648602813	1.5865979525080824	AAACAAAGCAATGGTTG
chr1	78949464	78949465	chr1:78949465:A:T	rs10157118	A	T	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	79043536	79043537	chr1:79043537:C:A	rs10874008	C	A	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr1	79270125	79270126	chr1:79270126:A:G	rs542379536	A	G	a	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr1	79310971	79310972	chr1:79310972:T:C	rs544472259	T	C	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr1	79310973	79310974	chr1:79310974:T:G	chr1:79310974:T:G	T	G	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	79425718	79425719	chr1:79425719:A:G	rs3015116	A	G	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr1	79575471	79575472	chr1:79575472:G:T	rs115247832	G	T	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr1	79746443	79746444	chr1:79746444:C:T	rs114943547	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr1	79777635	79777636	chr1:79777636:C:T	rs55658731	C	T	c	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr1	79777636	79777637	chr1:79777637:T:G	rs55800905	T	G	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr1	79899676	79899677	chr1:79899677:C:T	rs10493639	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr1	80078895	80078896	chr1:80078896:A:G	rs10782716	A	G	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr1	80218974	80218975	chr1:80218975:A:G	rs1539483	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.98095388818252	-1.0765022207778332	GAGCAATACTTTTGTTG
chr1	80339186	80339187	chr1:80339187:C:T	rs17488710	C	T	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	80490267	80490268	chr1:80490268:C:T	rs2389054	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	80959585	80959586	chr1:80959586:C:T	rs12732735	C	T	C	Sox3.mouse_HMG_1	11	1	-	2.6445954935545437	-1.089881933491203	AAAAAATTTAAGTGTAA
chr1	80992517	80992518	chr1:80992518:G:A	rs11163180	G	A	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr1	81183245	81183246	chr1:81183246:T:C	rs141105429	T	C	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	81315258	81315259	chr1:81315259:A:G	rs17106399	A	G	A	Sox3.mouse_HMG_1	12	1	-	5.356605507917049	-0.8498600773008028	ATCCAATGATATTGTAT
chr1	81408016	81408017	chr1:81408017:T:C	rs4650539	T	C	T	Sox3.mouse_HMG_1	6	1	+	1.532823466186921	-5.113267303442002	AGACAATGAGGTTGTTA
chr1	81464152	81464153	chr1:81464153:C:T	rs6677307	C	T	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr1	81464158	81464159	chr1:81464159:A:C	rs76229965	A	C	A	Sox3.mouse_HMG_1	12	1	-	3.8706029978002614	-2.697525072867361	AAAAAATGCAACTGTTG
chr1	81547950	81547951	chr1:81547951:T:C	rs1039072173	T	C	T	Sox3.mouse_HMG_1	0	1	-	1.842377362222187	0.46956069676064754	ATAAAATAACATTGATG
chr1	81590333	81590334	chr1:81590334:C:T	rs115586152	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	82111414	82111415	chr1:82111415:T:C	rs2200954	T	C	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr1	82244438	82244439	chr1:82244439:A:G	rs786381	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr1	82392068	82392069	chr1:82392069:T:C	rs1281621	T	C	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr1	82921900	82921901	chr1:82921901:A:G	rs79135698	A	G	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr1	83748171	83748172	chr1:83748172:G:A	rs12724410	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	83827429	83827430	chr1:83827430:C:T	rs12135529	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr1	83849598	83849599	chr1:83849599:T:C	rs188785817	T	C	T	Sox3.mouse_HMG_1	6	1	+	4.302108768884219	-2.3439820007447	AATCAATAGAAGTGTAA
chr1	83997444	83997445	chr1:83997445:G:A	rs558567	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr1	84171666	84171667	chr1:84171667:A:G	rs61360062	A	G	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	84225643	84225644	chr1:84225644:A:G	rs11163916	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	84520355	84520356	chr1:84520356:C:T	rs925740	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	84768543	84768544	chr1:84768544:T:C	rs4448534	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr1	84836423	84836424	chr1:84836424:T:C	rs117903548	T	C	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr1	84953591	84953592	chr1:84953592:T:A	rs72718785	T	A	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr1	85166912	85166913	chr1:85166913:T:G	rs817422	T	G	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	85174748	85174749	chr1:85174749:G:A	rs1037744	G	A	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr1	85174749	85174750	chr1:85174750:C:A	rs1037745	C	A	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr1	85255059	85255060	chr1:85255060:G:A	rs115559684	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	85322806	85322807	chr1:85322807:A:C	rs233120	A	C	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	85343489	85343490	chr1:85343490:A:T	rs3768224	A	T	A	Sox3.mouse_HMG_1	15	1	-	5.587385255664263	2.0905416338717924	AAACAATGATTTTTTTA
chr1	85343499	85343500	chr1:85343500:T:C	rs3768223	T	C	T	Sox3.mouse_HMG_1	5	1	-	5.587385255664263	-1.1387482216381906	AAACAATGATTTTTTTA
chr1	85371071	85371072	chr1:85371072:G:A	rs79594869	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr1	85484636	85484637	chr1:85484637:G:C	rs17127802	G	C	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr1	85524504	85524505	chr1:85524505:T:C	rs371896046	T	C	T	Sox3.mouse_HMG_1	5	1	-	3.585613225097747	-3.140520252204709	AAACAATCCCATTTTAT
chr1	85656211	85656212	chr1:85656212:T:G	rs3767163	T	G	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr1	85818731	85818732	chr1:85818732:T:C	rs566195664	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr1	86086180	86086181	chr1:86086181:G:A	rs11161729	G	A	G	Sox3.mouse_HMG_1	3	1	-	2.260168873852941	-3.7226072442813805	AAACAAATATAGTTTTG
chr1	86139113	86139114	chr1:86139114:A:G	rs115785897	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	86313438	86313439	chr1:86313439:T:C	rs1575415	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr1	86547245	86547246	chr1:86547246:C:T	rs2231580	C	T	c	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr1	86703258	86703259	chr1:86703259:T:G	rs72959586	T	G	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr1	86757938	86757939	chr1:86757939:T:C	rs17129466	T	C	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	87224728	87224729	chr1:87224729:C:A	rs6668687	C	A	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr1	87584768	87584769	chr1:87584769:C:T	rs76709829	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	87817023	87817024	chr1:87817024:C:T	rs2436980	C	T	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr1	88190109	88190110	chr1:88190110:T:C	rs79459023	T	C	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr1	88371238	88371239	chr1:88371239:G:C	rs10923065	G	C	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr1	88477430	88477431	chr1:88477431:C:T	rs4656045	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr1	88884340	88884341	chr1:88884341:G:C	rs56035308	G	C	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr1	89165912	89165913	chr1:89165913:C:T	rs590617	C	T	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr1	89261154	89261155	chr1:89261155:G:A	rs188157736	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	89347453	89347454	chr1:89347454:A:C	rs4658326	A	C	A	Sox3.mouse_HMG_1	6	1	-	1.1757204037718223	-5.732734630324588	ATACCATGACAGTGATT
chr1	89553042	89553043	chr1:89553043:T:G	rs1334072031	T	G	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr1	90106131	90106132	chr1:90106132:T:C	rs115831754	T	C	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr1	90357466	90357467	chr1:90357467:C:A	rs10801809	C	A	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr1	90501318	90501319	chr1:90501319:A:G	chr1:90501319:A:G	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr1	90728133	90728134	chr1:90728134:T:C	rs12568187	T	C	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr1	91322425	91322426	chr1:91322426:T:C	rs10801862	T	C	T	Sox3.mouse_HMG_1	5	1	-	4.813392921490018	-1.9127405558124373	ATGCAATGATACTGTTT
chr1	91618053	91618054	chr1:91618054:A:G	rs2174952	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr1	91820317	91820318	chr1:91820318:T:C	rs10874981	T	C	T	Sox3.mouse_HMG_1	8	1	-	3.1119068886367742	2.0854934136261383	TAACAGTGATGTTGTTA
chr1	91879983	91879984	chr1:91879984:C:A	rs2799510	C	A	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr1	91900702	91900703	chr1:91900703:C:T	rs17884452	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr1	91901490	91901491	chr1:91901491:G:A	rs528338535	G	A	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr1	91915925	91915926	chr1:91915926:A:G	rs11165787	A	G	A	Sox3.mouse_HMG_1	15	1	+	4.198423734955095	3.128848499141531	AAACAATCGCAATGTAT
chr1	92013803	92013804	chr1:92013804:G:T	rs72954747	G	T	G	Sox3.mouse_HMG_1	7	1	+	4.810864324510381	3.273315219768226	TAACAAAGATATTGGTT
chr1	92488970	92488971	chr1:92488971:C:T	rs12568629	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	92641850	92641851	chr1:92641851:C:T	rs12025792	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr1	92787446	92787447	chr1:92787447:C:T	rs1535372	C	T	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr1	92833198	92833199	chr1:92833199:T:C	rs1854797	T	C	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr1	92915857	92915858	chr1:92915858:C:T	rs11164836	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr1	93179624	93179625	chr1:93179625:C:T	rs1335679	C	T	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr1	93281308	93281309	chr1:93281309:T:C	rs11164888	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr1	93341159	93341160	chr1:93341160:T:C	rs954946726	T	C	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr1	93444329	93444330	chr1:93444330:C:A	rs2391271	C	A	C	Sox3.mouse_HMG_1	3	1	+	11.408015046856304	4.683301583992603	GAACAATATCATTCTTT
chr1	93531136	93531137	chr1:93531137:T:C	rs1079750	T	C	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr1	93628921	93628922	chr1:93628922:T:C	rs11588860	T	C	T	Sox3.mouse_HMG_1	0	1	-	2.935696277377162	1.5628796119156247	AAACAATTTTGTGGTTA
chr1	93735161	93735162	chr1:93735162:T:C	rs771518644	T	C	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	93848597	93848598	chr1:93848598:T:C	rs78969815	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	93848598	93848599	chr1:93848599:C:T	rs11165019	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr1	94180789	94180790	chr1:94180790:T:C	rs17111205	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	94359106	94359107	chr1:94359107:C:T	rs12064428	C	T	C	Sox3.mouse_HMG_1	3	1	+	4.656716777385066	-1.326059340749255	GAACAGTGATAGTGATT
chr1	94359107	94359108	chr1:94359108:A:G	rs2786906	A	G	G	Sox3.mouse_HMG_1	4	1	+	4.656716777385066	-2.1556083145921683	GAACAGTGATAGTGATT
chr1	94683281	94683282	chr1:94683282:G:A	rs12739283	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr1	94832533	94832534	chr1:94832534:G:A	rs6671906	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr1	95145557	95145558	chr1:95145558:A:G	rs12239725	A	G	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	95582412	95582413	chr1:95582413:A:G	rs923246857	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr1	95874337	95874338	chr1:95874338:C:A	rs12061024	C	A	C	Sox3.mouse_HMG_1	3	1	+	2.9147777017614556	-3.8099357611022424	GGACAATTTATTTGTTG
chr1	95912065	95912066	chr1:95912066:A:C	rs34830765	A	C	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr1	96011608	96011609	chr1:96011609:A:C	rs321240	A	C	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	96037013	96037014	chr1:96037014:C:G	rs161111	C	G	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr1	96104000	96104001	chr1:96104001:C:T	rs716219	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	96350391	96350392	chr1:96350392:A:G	rs150525091	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr1	96416774	96416775	chr1:96416775:A:C	rs1570727	A	C	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr1	96481477	96481478	chr1:96481478:G:A	rs111708859	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr1	96739018	96739019	chr1:96739019:T:A	rs2101876	T	A	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr1	96837194	96837195	chr1:96837195:C:T	rs75273458	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr1	96887716	96887717	chr1:96887717:G:C	rs79648733	G	C	G	Sox3.mouse_HMG_1	7	1	+	3.510342934053565	-2.110349200871209	CAGTAATGCAAGTGTTT
chr1	97070502	97070503	chr1:97070503:T:C	rs535789218	T	C	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr1	97140923	97140924	chr1:97140924:C:T	rs12023630	C	T	C	Sox3.mouse_HMG_1	5	1	-	1.9724869689175866	8.698620446220039	AAACAGTATTATAGTGT
chr1	97807179	97807180	chr1:97807180:A:C	rs191224074	A	C	A	Sox3.mouse_HMG_1	12	1	-	4.308368733351503	-2.25975933731612	CAGCAATTGCATTTTTG
chr1	98331556	98331557	chr1:98331557:G:C	rs1328316	G	C	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr1	98435261	98435262	chr1:98435262:C:A	rs10493903	C	A	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	98950514	98950515	chr1:98950515:G:A	rs309082	G	A	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr1	98950545	98950546	chr1:98950546:G:T	rs309083	G	T	T	Sox3.mouse_HMG_1	13	1	+	9.313094709171883	2.9439750937763485	AAACAATAATACTGTCT
chr1	99441380	99441381	chr1:99441381:G:C	rs115943349	G	C	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr1	99504437	99504438	chr1:99504438:G:T	rs12724806	G	T	G	Sox3.mouse_HMG_1	12	1	+	5.20780297917288	11.775931049840503	GAACAATCATATGGTTA
chr1	99728748	99728749	chr1:99728749:C:G	rs7522921	C	G	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr1	99809204	99809205	chr1:99809205:C:T	rs1389384	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr1	99820479	99820480	chr1:99820480:C:T	rs6657345	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr1	100346949	100346950	chr1:100346950:A:G	rs76781965	A	G	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr1	100354130	100354131	chr1:100354131:G:A	chr1:100354131:G:A	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr1	100354132	100354133	chr1:100354133:C:G	rs149981742	C	G	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	100354168	100354169	chr1:100354169:T:C	rs572059964	T	C	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr1	100459838	100459839	chr1:100459839:T:C	rs146551297	T	C	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr1	100459868	100459869	chr1:100459869:G:T	rs76551128	G	T	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr1	100801454	100801455	chr1:100801455:G:A	rs114820491	G	A	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr1	101107851	101107852	chr1:101107852:C:T	rs12727236	C	T	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr1	101286230	101286231	chr1:101286231:A:G	rs7518031	A	G	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	101313573	101313574	chr1:101313574:C:T	chr1:101313574:C:T	C	T	C	Sox3.mouse_HMG_1	15	1	-	1.8843506988934577	2.953925934707022	AAACAATAGCAATTTGT
chr1	101365301	101365302	chr1:101365302:C:T	rs11164177	C	T	C	Sox3.mouse_HMG_1	15	1	+	3.022511615092064	7.3250134128875475	CAAGAATGTTAGTGTCA
chr1	101400750	101400751	chr1:101400751:T:C	rs11164190	T	C	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr1	101965167	101965168	chr1:101965168:A:T	rs17435011	A	T	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr1	101974887	101974888	chr1:101974888:T:C	rs4543821	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr1	102892721	102892722	chr1:102892722:T:C	rs962453	T	C	T	Sox3.mouse_HMG_1	14	1	+	6.287740257433034	0.17784934218432696	TAACAATGGTATTTTAG
chr1	103265791	103265792	chr1:103265792:C:T	rs79529509	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr1	103300447	103300448	chr1:103300448:A:G	rs72692364	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	104121507	104121508	chr1:104121508:A:G	rs72689177	A	G	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr1	104248658	104248659	chr1:104248659:A:C	rs10127620	A	C	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	104539371	104539372	chr1:104539372:T:C	rs17021664	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr1	104561058	104561059	chr1:104561059:A:G	rs1597177	A	G	a	Sox3.mouse_HMG_1	10	1	+	5.76312392415039	-1.1451212348209496	CAACAATTCCATTGAAA
chr1	105173481	105173482	chr1:105173482:T:A	rs192429804	T	A	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	105633149	105633150	chr1:105633150:A:T	rs530679898	A	T	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr1	105655817	105655818	chr1:105655818:C:A	rs1361465	C	A	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	105867262	105867263	chr1:105867263:G:T	rs17426923	G	T	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr1	106515646	106515647	chr1:106515647:C:G	rs2031503	C	G	G	Sox3.mouse_HMG_1	14	1	-	2.480287818950922	2.797046155484212	TAACAATGGTTTTGGTA
chr1	106702088	106702089	chr1:106702089:C:T	rs11589101	C	T	C	Sox3.mouse_HMG_1	13	1	-	2.5200361783987413	-3.5880696116271755	GAACAACAAAAGAGTTT
chr1	106705866	106705867	chr1:106705867:T:C	rs4244116	T	C	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr1	106789931	106789932	chr1:106789932:T:C	rs17017723	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	106954194	106954195	chr1:106954195:G:A	rs7520002	G	A	G	Sox3.mouse_HMG_1	10	1	-	1.827284258151773	1.579004733566022	AAACAATGTCCTTGGGT
chr1	106996358	106996359	chr1:106996359:C:T	rs6698525	C	T	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr1	107464674	107464675	chr1:107464675:G:A	rs11185119	G	A	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr1	107599452	107599453	chr1:107599453:C:T	rs11185143	C	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr1	107641224	107641225	chr1:107641225:T:C	rs17019580	T	C	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr1	107804914	107804915	chr1:107804915:C:T	rs79548971	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	108049926	108049927	chr1:108049927:T:C	rs17020764	T	C	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	108140277	108140278	chr1:108140278:C:T	rs1419000	C	T	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr1	108532613	108532614	chr1:108532614:G:A	rs12039852	G	A	a	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr1	108893225	108893226	chr1:108893226:T:C	rs72984614	T	C	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr1	109075154	109075155	chr1:109075155:A:G	rs112027893	A	G	A	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr1	109075634	109075635	chr1:109075635:C:T	rs673365	C	T	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr1	109079730	109079731	chr1:109079731:C:G	rs145802019	C	G	c	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr1	109159534	109159535	chr1:109159535:C:G	rs17838319	C	G	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr1	109194509	109194510	chr1:109194510:T:C	rs2359244	T	C	T	Sox3.mouse_HMG_1	10	1	-	2.8540903844164136	-4.054154774554928	CAAGAGTGACAGTGTTT
chr1	109225538	109225539	chr1:109225539:T:C	rs7547246	T	C	T	Sox3.mouse_HMG_1	5	1	-	4.453010409178347	-2.273123068124108	TAAGAATGTTATTGTGA
chr1	109283623	109283624	chr1:109283624:C:A	rs78596170	C	A	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr1	109321384	109321385	chr1:109321385:C:T	rs145350793	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr1	109980601	109980602	chr1:109980602:A:G	chr1:109980602:A:G	A	G	A	Sox3.mouse_HMG_1	2	1	+	2.951035011130633	-1.456899967849828	TTACAATGTCAGTGGTG
chr1	110163156	110163157	chr1:110163157:G:A	rs2361043	G	A	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr1	110236461	110236462	chr1:110236462:A:G	rs11102066	A	G	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr1	110310661	110310662	chr1:110310662:G:A	rs7544525	G	A	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr1	110435804	110435805	chr1:110435805:G:A	rs12563285	G	A	G	Sox3.mouse_HMG_1	8	1	+	3.5826313209803535	4.60904479599099	CTACAATGGCAGAGTTA
chr1	110556143	110556144	chr1:110556144:T:C	rs903050	T	C	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr1	110714556	110714557	chr1:110714557:A:T	rs12074788	A	T	A	Sox3.mouse_HMG_1	10	1	+	1.9430866397077462	-4.869848339459268	AATCATTTTCAGTGTTG
chr1	110918332	110918333	chr1:110918333:G:A	rs1282025	G	A	G	Sox3.mouse_HMG_1	0	1	+	5.767904423143803	7.140721088605344	GAGAAATAATATTGTTA
chr1	110945950	110945951	chr1:110945951:T:C	rs12145219	T	C	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr1	110962565	110962566	chr1:110962566:A:C	rs17639720	A	C	a	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr1	111205181	111205182	chr1:111205182:C:T	rs574531344	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	111489503	111489504	chr1:111489504:T:C	rs58712964	T	C	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr1	111489508	111489509	chr1:111489509:T:G	rs61002431	T	G	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	111593335	111593336	chr1:111593336:T:C	rs1890548	T	C	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr1	111618360	111618361	chr1:111618361:T:C	rs12122511	T	C	t	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr1	111656549	111656550	chr1:111656550:T:G	rs750715701	T	G	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr1	111667084	111667085	chr1:111667085:G:A	rs116692473	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr1	111708702	111708703	chr1:111708703:A:G	rs7552250	A	G	a	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr1	111752548	111752549	chr1:111752549:A:G	rs174734	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr1	111948909	111948910	chr1:111948910:A:G	rs1893737	A	G	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr1	111948952	111948953	chr1:111948953:T:C	rs1893736	T	C	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr1	113057890	113057891	chr1:113057891:C:T	rs72683488	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr1	113308516	113308517	chr1:113308517:C:T	rs12048530	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr1	113308525	113308526	chr1:113308526:G:C	rs115819977	G	C	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr1	113868357	113868358	chr1:113868358:C:T	rs17031955	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr1	113947834	113947835	chr1:113947835:A:G	rs187214085	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	114131963	114131964	chr1:114131964:C:G	rs115943992	C	G	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	114558549	114558550	chr1:114558550:G:A	rs4839384	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr1	115144644	115144645	chr1:115144645:C:T	rs7528116	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	115193334	115193335	chr1:115193335:C:T	rs973835	C	T	C	Sox3.mouse_HMG_1	7	1	-	2.053122892227005	1.5570525724496949	GAACTATGATAATGTGT
chr1	115327504	115327505	chr1:115327505:C:T	rs11466073	C	T	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr1	115437350	115437351	chr1:115437351:C:T	rs750403	C	T	C	Sox3.mouse_HMG_1	10	1	-	3.3440210156784533	10.252266174649792	AAACAATTATGGTGATG
chr1	115462086	115462087	chr1:115462087:G:A	rs531818616	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	115529666	115529667	chr1:115529667:C:T	rs72699578	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr1	115677319	115677320	chr1:115677320:A:G	rs11590213	A	G	a	Sox3.mouse_HMG_1	7	1	-	3.219809351577832	-0.8633336786047849	AAGCACTTCCAGTGTTG
chr1	115745012	115745013	chr1:115745013:A:G	rs10801969	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr1	115875212	115875213	chr1:115875213:T:C	rs75587840	T	C	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr1	116255276	116255277	chr1:116255277:C:T	rs10924021	C	T	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr1	116330303	116330304	chr1:116330304:C:T	rs1034787785	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr1	116499222	116499223	chr1:116499223:G:T	rs192266438	G	T	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr1	116796991	116796992	chr1:116796992:C:G	rs798024	C	G	G	Sox3.mouse_HMG_1	8	1	+	3.533995217875747	3.6401422062441866	GCACAATGCAATTATTG
chr1	116951656	116951657	chr1:116951657:G:A	rs76670701	G	A	G	Sox3.mouse_HMG_1	8	1	+	11.532760690810894	12.55917416582153	AAACAATTGCATTCTTT
chr1	116990268	116990269	chr1:116990269:T:C	rs6589	T	C	T	Sox3.mouse_HMG_1	3	1	+	5.197049358096607	11.17982547623093	AACTAATTGTATTGTTT
chr1	116997763	116997764	chr1:116997764:A:T	rs2057592	A	T	A	Sox3.mouse_HMG_1	5	1	+	0.8371849928848843	-6.071270041211525	AAAAAATGCTGTTGTGT
chr1	117003941	117003942	chr1:117003942:A:T	rs75378515	A	T	A	Sox3.mouse_HMG_1	1	1	+	4.965727302647144	0.07538837637294382	GATCAATTACATTGGTT
chr1	117007045	117007046	chr1:117007046:A:G	rs76234348	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr1	117147401	117147402	chr1:117147402:T:C	rs111616220	T	C	T	Sox3.mouse_HMG_1	0	1	-	2.9546517224782747	1.5818350570167357	ATACAATTCAAGTATTT
chr1	117147629	117147630	chr1:117147630:T:C	rs146484330	T	C	T	Sox3.mouse_HMG_1	11	1	+	1.7620052190651654	-4.2954508898951875	TAACAATGACTTTGCAT
chr1	117147649	117147650	chr1:117147650:G:A	rs10754339	G	A	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr1	117566617	117566618	chr1:117566618:T:C	rs769052369	T	C	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr1	117740439	117740440	chr1:117740440:A:G	rs319487	A	G	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr1	118147460	118147461	chr1:118147461:T:C	rs76573659	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	118360354	118360355	chr1:118360355:A:G	rs2474937	A	G	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr1	119011782	119011783	chr1:119011783:T:C	rs77313534	T	C	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr1	119076056	119076057	chr1:119076057:T:G	rs3804553	T	G	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr1	119160289	119160290	chr1:119160290:A:G	rs12097967	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	119188900	119188901	chr1:119188901:G:C	rs61806983	G	C	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	119411503	119411504	chr1:119411504:T:C	rs1341018	T	C	.	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr1	119531727	119531728	chr1:119531728:T:C	rs7515615	T	C	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr1	119568633	119568634	chr1:119568634:T:C	rs12030462	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	119732978	119732979	chr1:119732979:G:A	rs539304	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	119834505	119834506	chr1:119834506:C:A	rs1815687	C	A	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr1	119836619	119836620	chr1:119836620:A:G	rs75471434	A	G	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr1	119836621	119836622	chr1:119836622:G:A	rs3009183	G	A	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr1	119925863	119925864	chr1:119925864:T:C	rs6658796	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr1	120095222	120095223	chr1:120095223:G:A	rs74115534	G	A	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr1	120386976	120386977	chr1:120386977:G:A	rs147754724	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr1	120434002	120434003	chr1:120434003:G:A	rs3009751	G	A	g	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr1	121086276	121086277	chr1:121086277:C:T	rs1333731570	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	122594270	122594271	chr1:122594271:A:G	rs1182239936	A	G	.	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	122828872	122828873	chr1:122828873:A:C	rs1288787527	A	C	.	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr1	123077020	123077021	chr1:123077021:T:A	rs1371309832	T	A	.	Sox3.mouse_HMG_1	6	1	+	1.3834040847815656	-5.525050949314844	AAACAATCTTTTTGTGG
chr1	123368144	123368145	chr1:123368145:T:A	rs1174547462	T	A	.	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr1	124038872	124038873	chr1:124038873:G:A	rs1224685951	G	A	.	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr1	124521423	124521424	chr1:124521424:A:G	rs1265194102	A	G	.	Sox3.mouse_HMG_1	5	1	+	6.508025899929027	-0.21810757737342784	AAACAATATTTTTGTGG
chr1	145823079	145823080	chr1:145823080:A:G	rs1386606282	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr1	145849750	145849751	chr1:145849751:C:T	rs4128488	C	T	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	147506138	147506139	chr1:147506139:C:T	rs17160295	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	149152427	149152428	chr1:149152428:T:G	rs1304926203	T	G	t	Sox3.mouse_HMG_1	5	1	-	4.17265518225837	-2.6404896720337137	CAGCAATTACAGTTTTT
chr1	149888193	149888194	chr1:149888194:C:G	rs185161406	C	G	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr1	149888236	149888237	chr1:149888237:C:G	rs994777708	C	G	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	150066295	150066296	chr1:150066296:T:C	rs13375753	T	C	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr1	150165685	150165686	chr1:150165686:A:G	rs16834580	A	G	A	Sox3.mouse_HMG_1	8	1	+	2.906176228500683	1.8797627534900472	GGGCAATAACAGTGTGT
chr1	150213485	150213486	chr1:150213486:C:A	rs942451	C	A	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr1	150381799	150381800	chr1:150381800:G:A	rs834233	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr1	150486610	150486611	chr1:150486611:G:C	rs6664703	G	C	c	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr1	150749084	150749085	chr1:150749085:A:G	rs181085131	A	G	A	Sox3.mouse_HMG_1	5	1	+	4.3492639834781395	-2.376869493824316	ACACAATGATATTGAAA
chr1	150787697	150787698	chr1:150787698:A:G	rs12125650	A	G	A	Sox3.mouse_HMG_1	8	1	+	2.8177014005980716	1.7912879255874352	AAACACATACAGTGTTT
chr1	150787912	150787913	chr1:150787913:C:G	rs34481938	C	G	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr1	151000062	151000063	chr1:151000063:T:G	rs12079970	T	G	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	151981663	151981664	chr1:151981664:C:T	rs1532132	C	T	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr1	152035070	152035071	chr1:152035071:T:C	rs141679346	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	152680848	152680849	chr1:152680849:A:C	rs10788844	A	C	-	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr1	153244886	153244887	chr1:153244887:A:G	rs11205248	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr1	153526499	153526500	chr1:153526500:T:C	rs28780420	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr1	153572580	153572581	chr1:153572581:A:G	rs533536756	A	G	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr1	153572594	153572595	chr1:153572595:C:T	rs923192714	C	T	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr1	153954793	153954794	chr1:153954794:T:C	rs10908558	T	C	T	Sox3.mouse_HMG_1	10	1	-	1.8723119531171721	-5.035933205854168	AAGCACTTGAAGTGTTG
chr1	153991506	153991507	chr1:153991507:A:G	rs114120114	A	G	a	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr1	153993604	153993605	chr1:153993605:G:C	rs12564669	G	C	G	Sox3.mouse_HMG_1	8	1	+	2.8445417809370217	2.7383947925685814	AGACAATAGTGTTGTGT
chr1	154615192	154615193	chr1:154615193:A:G	rs4845384	A	G	G	Sox3.mouse_HMG_1	6	1	-	1.996351867655231	-4.649738901973686	AAACAATGGAAATTTAT
chr1	154720527	154720528	chr1:154720528:T:C	rs77510509	T	C	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr1	154756917	154756918	chr1:154756918:C:T	rs10908435	C	T	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr1	154759831	154759832	chr1:154759832:A:G	rs1553611	A	G	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr1	155045188	155045189	chr1:155045189:T:C	rs114543508	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	155231398	155231399	chr1:155231399:G:A	rs4043	G	A	a	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr1	156116288	156116289	chr1:156116289:T:C	chr1:156116289:T:C	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr1	156682010	156682011	chr1:156682011:A:C	rs10737171	A	C	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	156682023	156682024	chr1:156682024:C:T	rs12565861	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr1	157047031	157047032	chr1:157047032:T:A	rs822583	T	A	A	Sox3.mouse_HMG_1	11	1	+	3.88006429513709	-1.9823917987695374	TAATAATAAAATTTTTT
chr1	157139686	157139687	chr1:157139687:G:A	rs6427352	G	A	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr1	157175758	157175759	chr1:157175759:T:C	rs115190224	T	C	t	Sox3.mouse_HMG_1	16	1	-	0.9105761403049792	1.3444075850260864	CAGCAATGGCATGGTCA
chr1	157304127	157304128	chr1:157304128:T:C	rs4661116	T	C	t	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr1	157336473	157336474	chr1:157336474:T:C	rs4661119	T	C	t	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	157699789	157699790	chr1:157699790:T:A	rs58517866	T	A	T	Sox3.mouse_HMG_1	2	1	-	1.7656179262332676	-4.136468809723496	AAACAAAAGAAGTGGTT
chr1	158401887	158401888	chr1:158401888:T:C	rs6672459	T	C	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr1	158495150	158495151	chr1:158495151:C:T	rs1259002340	C	T	C	Sox3.mouse_HMG_1	2	1	-	3.235044354624489	7.642979333604947	AAGCAATGCTATTCATT
chr1	158520994	158520995	chr1:158520995:A:T	rs74802440	A	T	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr1	158614884	158614885	chr1:158614885:A:G	rs2518490	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr1	158684796	158684797	chr1:158684797:A:T	rs3835726	A	T	a	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr1	158699991	158699992	chr1:158699992:C:T	rs79973962	C	T	C	Sox3.mouse_HMG_1	9	1	+	0.6795910210524692	0.6438848961679013	CCACAATACCATCGTAG
chr1	158741503	158741504	chr1:158741504:A:C	rs2852643	A	C	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	158833429	158833430	chr1:158833430:C:T	rs61830771	C	T	c	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr1	158883630	158883631	chr1:158883631:T:C	rs2852665	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.625283455776992	-4.100850021525468	GTGCAAGGACATTGTTT
chr1	158883639	158883640	chr1:158883640:T:C	rs2852666	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr1	159005658	159005659	chr1:159005659:C:A	rs856069	C	A	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr1	159120465	159120466	chr1:159120466:T:C	rs1002408	T	C	T	Sox3.mouse_HMG_1	14	1	-	1.466679673248252	0.32550777016134647	CAACAATAGCTGTGATA
chr1	159176899	159176900	chr1:159176900:C:A	rs2249866	C	A	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr1	159180455	159180456	chr1:159180456:T:G	rs2253114	T	G	T	Sox3.mouse_HMG_1	7	1	-	3.64629247857881	-1.478329336568651	GGAAAATAATATTGTTC
chr1	159300351	159300352	chr1:159300352:C:G	rs72713644	C	G	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	159891079	159891080	chr1:159891080:A:G	rs66622578	A	G	A	Sox3.mouse_HMG_1	12	1	-	2.3827737248333443	-3.823691860384508	GAACAAGAGACTTGTTT
chr1	160285210	160285211	chr1:160285211:C:G	rs186324994	C	G	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr1	160285212	160285213	chr1:160285213:G:A	rs12086288	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr1	160363155	160363156	chr1:160363156:A:C	chr1:160363156:A:C	A	C	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr1	160709131	160709132	chr1:160709132:G:A	rs352681	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr1	160777824	160777825	chr1:160777825:C:T	rs7556098	C	T	N	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	160877655	160877656	chr1:160877656:T:C	rs16832515	T	C	G	Sox3.mouse_HMG_1	16	1	+	1.646221904968967	-1.955574760652015	GAACCATGTTATTCTAT
chr1	161072272	161072273	chr1:161072273:C:A	rs12116949	C	A	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr1	161186084	161186085	chr1:161186085:C:T	rs60677420	C	T	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr1	161374602	161374603	chr1:161374603:A:T	rs141625499	A	T	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr1	161765875	161765876	chr1:161765876:A:G	rs116804363	A	G	A	Sox3.mouse_HMG_1	7	1	+	8.421130345730969	8.917200665508279	GAAAAATAGTAGTGTTT
chr1	162205621	162205622	chr1:162205622:G:A	rs4657169	G	A	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	162228751	162228752	chr1:162228752:C:T	rs7548168	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr1	162364411	162364412	chr1:162364412:T:A	rs78778716	T	A	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr1	162366454	162366455	chr1:162366455:T:G	rs151475	T	G	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr1	162381663	162381664	chr1:162381664:A:G	rs12407972	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr1	162381664	162381665	chr1:162381665:G:T	rs1984871	G	T	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr1	162677187	162677188	chr1:162677188:G:A	rs4453015	G	A	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	162677188	162677189	chr1:162677189:G:A	rs77960650	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr1	162840672	162840673	chr1:162840673:C:A	rs72713314	C	A	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	162955062	162955063	chr1:162955063:C:G	rs74117710	C	G	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr1	163056927	163056928	chr1:163056928:T:C	rs2842018	T	C	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr1	163322571	163322572	chr1:163322572:T:C	rs2292276	T	C	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr1	163381927	163381928	chr1:163381928:T:G	rs3010344	T	G	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	164638864	164638865	chr1:164638865:G:A	rs16833478	G	A	G	Sox3.mouse_HMG_1	8	1	+	1.1090552471131856	2.1354687221238215	GAACATTGGAAGCGTTT
chr1	164660776	164660777	chr1:164660777:A:G	rs148444150	A	G	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr1	164690352	164690353	chr1:164690353:A:G	rs1686195	A	G	A	Sox3.mouse_HMG_1	11	1	-	5.8140529453802685	-0.24340316358008418	AAAAAATATAATTGTAA
chr1	164701285	164701286	chr1:164701286:A:G	rs1686180	A	G	A	Sox3.mouse_HMG_1	16	1	-	7.887283265109231	4.285486599488248	AAAAAATGGCATTGTGT
chr1	164777729	164777730	chr1:164777730:A:G	rs10918069	A	G	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	164950787	164950788	chr1:164950788:T:C	rs76066236	T	C	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	165054748	165054749	chr1:165054749:T:C	rs1494416	T	C	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr1	165069057	165069058	chr1:165069058:A:T	rs4495672	A	T	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr1	165351733	165351734	chr1:165351734:G:A	rs12126669	G	A	G	Sox3.mouse_HMG_1	13	1	+	6.4323987557212945	0.32429296569537824	AAACAATTTTTTTGTGT
chr1	165383786	165383787	chr1:165383787:A:G	rs1501492	A	G	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr1	165597915	165597916	chr1:165597916:A:G	rs17408590	A	G	A	Sox3.mouse_HMG_1	10	1	+	3.0218447003965183	-3.886400458574821	AAACAATTACACTGACT
chr1	165681549	165681550	chr1:165681550:C:T	rs3845536	C	T	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr1	165992944	165992945	chr1:165992945:G:A	rs1867553	G	A	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr1	166283440	166283441	chr1:166283441:G:C	rs539385918	G	C	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr1	166355108	166355109	chr1:166355109:A:G	rs148552395	A	G	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr1	166514293	166514294	chr1:166514294:T:C	rs12097144	T	C	T	Sox3.mouse_HMG_1	10	1	-	2.822086131629936	-4.086159027341402	TAAAAATAAAATTGATA
chr1	166571162	166571163	chr1:166571163:T:C	rs12143336	T	C	T	Sox3.mouse_HMG_1	5	1	-	3.3554209185720008	-3.3707125587304563	GAGCAATAACATTGCAG
chr1	166571174	166571175	chr1:166571175:T:C	rs17430677	T	C	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	166585251	166585252	chr1:166585252:C:T	rs17431265	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	166744725	166744726	chr1:166744726:C:A	rs575051	C	A	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	166744726	166744727	chr1:166744727:C:T	rs507864	C	T	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr1	167163498	167163499	chr1:167163499:T:G	rs34758860	T	G	t	Sox3.mouse_HMG_1	0	1	-	4.991850373891142	3.402258861538942	AGTCAATTGAATTGTTG
chr1	167464182	167464183	chr1:167464183:A:G	rs1723018	A	G	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr1	167522247	167522248	chr1:167522248:A:C	rs858535	A	C	A	Sox3.mouse_HMG_1	0	1	+	9.70129023958343	8.11169872723123	AGACAATACAAGTGTTG
chr1	167623505	167623506	chr1:167623506:A:C	rs1229399	A	C	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	167715829	167715830	chr1:167715830:T:C	rs73035771	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr1	167837691	167837692	chr1:167837692:G:T	rs1034466	G	T	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	167856246	167856247	chr1:167856247:T:C	rs2071921	T	C	t	Sox3.mouse_HMG_1	6	1	+	1.8647513120598782	-4.78133945756904	CACCAATGACAATGTAG
chr1	167980484	167980485	chr1:167980485:C:T	rs113942949	C	T	C	Sox3.mouse_HMG_1	7	1	-	1.2043646307138687	0.7082943109365569	AAAAATTGTAAGTGTTG
chr1	168288261	168288262	chr1:168288262:T:C	rs2300579	T	C	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	168484156	168484157	chr1:168484157:A:T	rs858113	A	T	T	Sox3.mouse_HMG_1	14	1	-	7.176427213489911	1.89094986479482	AAGAAATAACATTGTTA
chr1	168484189	168484190	chr1:168484190:C:G	rs10918906	C	G	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr1	168654642	168654643	chr1:168654643:C:T	rs2064299	C	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr1	168671768	168671769	chr1:168671769:T:A	rs12750484	T	A	A	Sox3.mouse_HMG_1	12	1	+	2.0066729074252634	-3.5815191662078485	GTACTATCACATTGTTT
chr1	168723376	168723377	chr1:168723377:C:A	rs11590043	C	A	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	168729187	168729188	chr1:168729188:T:C	rs60306829	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr1	168920741	168920742	chr1:168920742:C:A	rs190340769	C	A	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr1	168920747	168920748	chr1:168920748:T:C	rs7541615	T	C	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	169043746	169043747	chr1:169043747:A:G	rs12403132	A	G	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr1	170214230	170214231	chr1:170214231:G:A	rs114363491	G	A	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr1	170377104	170377105	chr1:170377105:A:G	rs12027094	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr1	170471217	170471218	chr1:170471218:A:G	rs12747498	A	G	A	Sox3.mouse_HMG_1	15	1	-	2.9015560906595836	-1.4009457071358995	CAATAATATTAGTGATG
chr1	170559405	170559406	chr1:170559406:G:A	rs12564005	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr1	170591462	170591463	chr1:170591463:A:G	rs6658866	A	G	A	Sox3.mouse_HMG_1	2	1	+	2.151867401030702	-2.2560675779497554	AAACAATAAAAGCTTTA
chr1	170807707	170807708	chr1:170807708:G:C	rs55813298	G	C	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr1	171134101	171134102	chr1:171134102:T:C	rs2064080	T	C	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr1	171420798	171420799	chr1:171420799:G:T	rs10798391	G	T	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	171664000	171664001	chr1:171664001:T:C	rs76809837	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	171664028	171664029	chr1:171664029:T:C	rs73041958	T	C	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr1	171785724	171785725	chr1:171785725:A:G	rs732304	A	G	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	171817617	171817618	chr1:171817618:T:A	rs6658116	T	A	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr1	171850877	171850878	chr1:171850878:G:C	rs10798706	G	C	G	Sox3.mouse_HMG_1	13	1	+	1.8495905710942286	-4.258515218931687	AAGCAATGCTTTTGTGA
chr1	171984370	171984371	chr1:171984371:A:C	rs76560907	A	C	A	Sox3.mouse_HMG_1	15	1	-	2.960092340247416	-1.606326517358619	AAACAAGGCCAGTGCTG
chr1	171984378	171984379	chr1:171984379:C:G	rs185676752	C	G	C	Sox3.mouse_HMG_1	7	1	-	2.960092340247416	-2.6605997946773563	AAACAAGGCCAGTGCTG
chr1	172394594	172394595	chr1:172394595:C:G	rs79093075	C	G	C	Sox3.mouse_HMG_1	11	1	-	3.6062676539071425	-0.32320978819232926	GAACAATGACAGAGCTA
chr1	172609681	172609682	chr1:172609682:G:A	rs1174043545	G	A	G	Sox3.mouse_HMG_1	13	1	+	3.3654987983268474	-2.742606991699068	TAACAATGTATGTGTTC
chr1	172616775	172616776	chr1:172616776:C:T	rs576813240	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr1	172658357	172658358	chr1:172658358:C:T	rs763110	C	T	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	172760303	172760304	chr1:172760304:G:A	rs6658247	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr1	172893960	172893961	chr1:172893961:G:T	rs6699678	G	T	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr1	172894806	172894807	chr1:172894807:C:A	rs187402418	C	A	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr1	172952586	172952587	chr1:172952587:G:A	rs10912501	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr1	173039427	173039428	chr1:173039428:T:C	rs16845306	T	C	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	173112263	173112264	chr1:173112264:A:T	rs17372073	A	T	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr1	173123051	173123052	chr1:173123052:A:G	rs12034497	A	G	G	Sox3.mouse_HMG_1	12	1	-	3.842195587190083	-2.3642699980277686	AAAAAATTGCATTCTTG
chr1	173205573	173205574	chr1:173205574:A:G	rs16845610	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr1	173297438	173297439	chr1:173297439:G:A	rs4916319	G	A	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr1	173329909	173329910	chr1:173329910:A:C	rs183538120	A	C	A	Sox3.mouse_HMG_1	10	1	+	2.494237258896	-4.070418195685263	TAAAAATGCCAGTGTCA
chr1	173329924	173329925	chr1:173329925:G:A	rs7526970	G	A	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr1	173402067	173402068	chr1:173402068:T:C	rs11809193	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	173408127	173408128	chr1:173408128:A:G	rs10798278	A	G	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr1	173430271	173430272	chr1:173430272:T:G	rs113786438	T	G	T	Sox3.mouse_HMG_1	0	1	-	5.587681189301853	3.998089676949656	AAACAATGTTATTTGTG
chr1	173570497	173570498	chr1:173570498:G:A	rs80054184	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr1	174654957	174654958	chr1:174654958:G:T	rs34819375	G	T	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr1	174654971	174654972	chr1:174654972:G:A	rs78172621	G	A	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr1	174940758	174940759	chr1:174940759:T:C	rs10912855	T	C	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr1	174970038	174970039	chr1:174970039:C:T	rs61828151	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr1	174976977	174976978	chr1:174976978:G:A	rs80050604	G	A	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr1	175132499	175132500	chr1:175132500:A:C	rs80057632	A	C	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr1	175133272	175133273	chr1:175133273:T:A	rs1476060	T	A	A	Sox3.mouse_HMG_1	6	1	+	3.6636664652947624	-3.244788568801647	AAACAGTGGAATTTTTG
chr1	175197662	175197663	chr1:175197663:T:A	rs2861159	T	A	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr1	175207019	175207020	chr1:175207020:A:G	rs947124308	A	G	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr1	175564903	175564904	chr1:175564904:C:T	rs78083726	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr1	175564906	175564907	chr1:175564907:C:T	chr1:175564907:C:T	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	176119049	176119050	chr1:176119050:A:C	rs2502841	A	C	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	176306684	176306685	chr1:176306685:A:G	rs16849735	A	G	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr1	176576271	176576272	chr1:176576272:T:A	rs12139180	T	A	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr1	177958518	177958519	chr1:177958519:C:A	rs16828589	C	A	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr1	178012424	178012425	chr1:178012425:G:A	rs11584600	G	A	G	Sox3.mouse_HMG_1	3	1	-	9.645911564844365	3.6631354467100437	AAACAAAAGCAGTGTTT
chr1	178060878	178060879	chr1:178060879:A:G	rs115496402	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr1	178262544	178262545	chr1:178262545:A:G	rs115754055	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr1	178283097	178283098	chr1:178283098:C:A	rs548322153	C	A	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr1	178310517	178310518	chr1:178310518:A:G	rs12022185	A	G	A	Sox3.mouse_HMG_1	11	1	-	6.243503527985643	0.18604741902529087	AAACAGTAAAATTGATT
chr1	178682734	178682735	chr1:178682735:C:T	rs115968239	C	T	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr1	178715862	178715863	chr1:178715863:T:A	rs10913617	T	A	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr1	179326872	179326873	chr1:179326873:C:T	rs6699698	C	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr1	179706442	179706443	chr1:179706443:C:T	rs11581272	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	180228612	180228613	chr1:180228613:T:C	rs4259598	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr1	180265322	180265323	chr1:180265323:T:C	rs3911332	T	C	T	Sox3.mouse_HMG_1	0	1	-	0.14585483200810423	-1.2269618334534362	AAGCAAGGGCAGAGTTT
chr1	180469759	180469760	chr1:180469760:A:T	rs6663823	A	T	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr1	180503375	180503376	chr1:180503376:G:A	rs17300712	G	A	G	Sox3.mouse_HMG_1	13	1	+	2.4857437403103595	-3.6223620497155564	GTACAAAGAAAGTGTTG
chr1	180533252	180533253	chr1:180533253:C:G	rs10914021	C	G	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr1	180549121	180549122	chr1:180549122:C:T	rs6665811	C	T	C	Sox3.mouse_HMG_1	16	1	-	0.543600739121693	0.10976929440058592	AAACAATAGCTCTGTCG
chr1	180568563	180568564	chr1:180568564:T:C	rs17373022	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr1	180787919	180787920	chr1:180787920:A:G	rs3761904	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr1	181088051	181088052	chr1:181088052:A:T	rs4652560	A	T	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr1	181135732	181135733	chr1:181135733:C:G	rs4652564	C	G	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	181166261	181166262	chr1:181166262:C:T	rs75708994	C	T	C	Sox3.mouse_HMG_1	7	1	-	1.178055082740703	0.681984762963393	GCACAATGGTACTGTAA
chr1	181643800	181643801	chr1:181643801:C:T	rs10910978	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr1	181783392	181783393	chr1:181783393:A:T	rs77483262	A	T	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr1	182094827	182094828	chr1:182094828:T:G	rs7545241	T	G	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr1	182314435	182314436	chr1:182314436:G:C	rs16858833	G	C	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	182337626	182337627	chr1:182337627:A:G	rs12403423	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr1	182488923	182488924	chr1:182488924:G:A	rs140172735	G	A	G	Sox3.mouse_HMG_1	3	1	-	3.555655950509558	-2.427120167624764	AAGCAATAATTTTGTAA
chr1	182594701	182594702	chr1:182594702:T:C	chr1:182594702:T:C	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr1	182606535	182606536	chr1:182606536:G:A	rs3754289	G	A	G	Sox3.mouse_HMG_1	13	1	+	6.018631562030352	-0.08947422799556409	AAACAAAGGCATTGATG
chr1	182687370	182687371	chr1:182687371:G:A	rs7541043	G	A	A	Sox3.mouse_HMG_1	11	1	+	0.8518082223994003	-2.8826692046463482	CAAAGATGCCAGTGTTG
chr1	182702968	182702969	chr1:182702969:G:A	rs7512765	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr1	182795968	182795969	chr1:182795969:C:T	rs6698614	C	T	C	Sox3.mouse_HMG_1	3	1	+	6.990360288789921	1.0075841706556008	GGACAATGTCAGTGTGT
chr1	183019855	183019856	chr1:183019856:T:A	rs12035498	T	A	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	183020230	183020231	chr1:183020231:C:T	rs10797813	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	183181347	183181348	chr1:183181348:A:G	rs17538742	A	G	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	183181396	183181397	chr1:183181397:G:T	rs10494559	G	T	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr1	183303159	183303160	chr1:183303160:T:C	rs6687056	T	C	C	Sox3.mouse_HMG_1	11	1	+	3.4466165814808054	-2.6108395274795466	AAGCAATGATATCATTT
chr1	183470483	183470484	chr1:183470484:T:C	rs916859617	T	C	T	Sox3.mouse_HMG_1	5	1	+	0.970743889707853	1.0660540695121776	GAACATTGGTATAGTCT
chr1	183593697	183593698	chr1:183593698:C:T	rs3754514	C	T	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	183638971	183638972	chr1:183638972:C:T	rs12024089	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr1	183817819	183817820	chr1:183817820:C:T	rs114423999	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	183817835	183817836	chr1:183817836:A:G	rs56346943	A	G	A	Sox3.mouse_HMG_1	4	1	+	2.7112164296693297	-4.101108662307906	AAGCAATGGTACTGTGA
chr1	183975982	183975983	chr1:183975983:C:T	rs2986555	C	T	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr1	184020180	184020181	chr1:184020181:A:G	rs16822334	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr1	184060858	184060859	chr1:184060859:C:T	rs17572231	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr1	184167465	184167466	chr1:184167466:T:C	rs4650655	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr1	184241670	184241671	chr1:184241671:A:G	rs2840274	A	G	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	184403068	184403069	chr1:184403069:A:G	rs13374592	A	G	A	Sox3.mouse_HMG_1	11	1	-	5.120586801365049	-0.9368693075953034	AAACAGTAATATTGGTA
chr1	184424167	184424168	chr1:184424168:A:G	rs12135850	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr1	184634860	184634861	chr1:184634861:A:C	chr1:184634861:A:C	A	C	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	184634864	184634865	chr1:184634865:A:G	chr1:184634865:A:G	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr1	184773857	184773858	chr1:184773858:C:G	rs76495671	C	G	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr1	184864209	184864210	chr1:184864210:G:A	rs234644	G	A	A	Sox3.mouse_HMG_1	13	1	+	1.0071013391318009	-5.1010044508941155	GGACAATAATGCTGTTT
chr1	184878276	184878277	chr1:184878277:A:G	rs234651	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.303856970318249	-3.3422337993106708	AAGCAATTTAAGAGTTG
chr1	185017662	185017663	chr1:185017663:C:T	rs935070596	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr1	185207262	185207263	chr1:185207263:G:A	rs7543962	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr1	185260668	185260669	chr1:185260669:T:C	rs7539658	T	C	C	Sox3.mouse_HMG_1	6	1	+	6.561633153084733	-0.08445761654418665	AAAGAATGTAATTGTAG
chr1	185864432	185864433	chr1:185864433:A:C	rs7556537	A	C	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr1	186165508	186165509	chr1:186165509:C:T	rs112582488	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr1	186185635	186185636	chr1:186185636:T:C	rs10489751	T	C	T	Sox3.mouse_HMG_1	10	1	-	3.568375820509028	-3.3398693384623095	AAACAATAACAGTCTCC
chr1	186219813	186219814	chr1:186219814:G:A	rs1743666	G	A	G	Sox3.mouse_HMG_1	14	1	-	5.281890001121066	11.391780916369774	GAACAAGAATATTGCTT
chr1	186220307	186220308	chr1:186220308:T:C	rs138077643	T	C	T	Sox3.mouse_HMG_1	12	1	+	1.8104525093867463	-4.396013075831105	AAACAAGGAAAGTGTCC
chr1	186839493	186839494	chr1:186839494:G:A	rs12720491	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	187102493	187102494	chr1:187102494:A:G	rs10912004	A	G	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr1	187261804	187261805	chr1:187261805:A:G	rs75784818	A	G	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	187268031	187268032	chr1:187268032:G:A	rs330749	G	A	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr1	187281197	187281198	chr1:187281198:A:G	rs1496106	A	G	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr1	187573813	187573814	chr1:187573814:G:T	rs61812179	G	T	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr1	187691728	187691729	chr1:187691729:G:C	rs549160407	G	C	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr1	188127847	188127848	chr1:188127848:T:G	rs77991651	T	G	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	188433571	188433572	chr1:188433572:A:G	rs16828702	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	188653229	188653230	chr1:188653230:A:C	rs61832735	A	C	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	188712641	188712642	chr1:188712642:A:C	rs12070907	A	C	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr1	188886747	188886748	chr1:188886748:T:A	rs1445670	T	A	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr1	189538573	189538574	chr1:189538574:A:G	rs10157723	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	189657688	189657689	chr1:189657689:A:G	rs513328	A	G	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr1	189955134	189955135	chr1:189955135:G:A	rs6663130	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr1	190020157	190020158	chr1:190020158:G:A	rs10753909	G	A	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr1	190285897	190285898	chr1:190285898:T:C	rs16832235	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr1	190408354	190408355	chr1:190408355:T:C	rs1148619	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	190993460	190993461	chr1:190993461:G:A	rs10800999	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr1	192291282	192291283	chr1:192291283:A:G	rs6428092	A	G	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr1	192512154	192512155	chr1:192512155:T:C	rs4657830	T	C	C	Sox3.mouse_HMG_1	2	1	-	1.5930125105386164	-2.814922468441844	AAACAAAGCCATTATAG
chr1	192610398	192610399	chr1:192610399:T:C	rs78651125	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	192615219	192615220	chr1:192615220:T:C	rs4658060	T	C	C	Sox3.mouse_HMG_1	6	1	+	2.2894813035883383	-4.356609466040582	CACCAATACTAGTCTTT
chr1	192628891	192628892	chr1:192628892:A:C	rs4631672	A	C	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr1	192701078	192701079	chr1:192701079:A:G	rs7547089	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.9912342444125923	-4.734899232889867	CCACAAAAAAAGTGTTT
chr1	192701106	192701107	chr1:192701107:G:A	rs11576197	G	A	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr1	192724865	192724866	chr1:192724866:C:A	chr1:192724866:C:A	C	A	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr1	192833250	192833251	chr1:192833251:A:G	rs2153084	A	G	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr1	193143577	193143578	chr1:193143578:G:T	rs12137318	G	T	G	Sox3.mouse_HMG_1	8	1	-	3.1782895129126514	4.310849976291727	AAACAATTCTTTTATTA
chr1	193407205	193407206	chr1:193407206:G:T	rs144987317	G	T	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr1	193469313	193469314	chr1:193469314:A:G	rs12033145	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr1	193533478	193533479	chr1:193533479:A:G	rs6692705	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	193886039	193886040	chr1:193886040:T:G	rs12136700	T	G	T	Sox3.mouse_HMG_1	16	1	-	2.4949286281497356	0.2928150480069731	CAACAAAAAAAATGTTA
chr1	193952417	193952418	chr1:193952418:C:T	rs606149	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr1	194338447	194338448	chr1:194338448:A:T	rs10801296	A	T	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr1	195297892	195297893	chr1:195297893:T:C	rs141255937	T	C	T	Sox3.mouse_HMG_1	9	1	+	2.125226524120312	2.16093264900488	AAGCAATTATTTTGATT
chr1	195600015	195600016	chr1:195600016:T:C	rs12406671	T	C	T	Sox3.mouse_HMG_1	9	1	+	9.537946166023788	9.573652290908356	GAACAATTGTAGTGTGT
chr1	195865848	195865849	chr1:195865849:C:G	rs4587548	C	G	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr1	196130129	196130130	chr1:196130130:G:A	rs79254849	G	A	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr1	196148642	196148643	chr1:196148643:G:C	rs7518775	G	C	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr1	196401253	196401254	chr1:196401254:G:A	rs116815955	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr1	196456002	196456003	chr1:196456003:A:G	rs10494743	A	G	A	Sox3.mouse_HMG_1	12	1	-	2.428707700969102	-3.777757884248751	GAACCAGATAATTGTTT
chr1	196594104	196594105	chr1:196594105:C:T	rs147209840	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr1	196910572	196910573	chr1:196910573:G:A	rs146066397	G	A	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr1	196951770	196951771	chr1:196951771:G:T	rs114176389	G	T	g	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr1	197029892	197029893	chr1:197029893:A:G	rs143966682	A	G	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr1	197101645	197101646	chr1:197101646:C:T	rs10922162	C	T	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr1	197372933	197372934	chr1:197372934:G:C	rs143068581	G	C	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	197399834	197399835	chr1:197399835:G:T	rs2821100	G	T	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr1	197526742	197526743	chr1:197526743:A:T	rs952872813	A	T	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr1	197638818	197638819	chr1:197638819:C:T	rs564847785	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr1	197916170	197916171	chr1:197916171:G:A	rs74922488	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr1	198123423	198123424	chr1:198123424:C:T	rs113161864	C	T	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr1	198170005	198170006	chr1:198170006:G:T	rs3814322	G	T	G	Sox3.mouse_HMG_1	0	1	+	0.8828525198573676	0.23251486000266292	GAACAATTGAGCTGTTG
chr1	198623176	198623177	chr1:198623177:C:G	rs79412201	C	G	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr1	199152201	199152202	chr1:199152202:G:A	rs3861924	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr1	199433847	199433848	chr1:199433848:C:A	rs5779967	C	A	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr1	199491019	199491020	chr1:199491020:A:G	rs188229058	A	G	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr1	199844043	199844044	chr1:199844044:G:C	rs11806575	G	C	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr1	199851580	199851581	chr1:199851581:C:T	rs16845575	C	T	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr1	199878909	199878910	chr1:199878910:A:T	rs12062514	A	T	A	Sox3.mouse_HMG_1	6	1	-	3.318236428756891	-3.590218605339519	AAAAAATTTTATTTTTA
chr1	200075859	200075860	chr1:200075860:A:C	rs79293574	A	C	A	Sox3.mouse_HMG_1	5	1	+	4.8360033666525775	-1.977141487639508	AAAAAATAAAAGTGTGT
chr1	200076357	200076358	chr1:200076358:A:G	chr1:200076358:A:G	A	G	A	Sox3.mouse_HMG_1	5	1	+	0.5762497211687619	-6.149883756133694	GGACAATGCCATTTGTT
chr1	200834528	200834529	chr1:200834529:C:T	rs6659127	C	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr1	200857150	200857151	chr1:200857151:G:T	rs182832347	G	T	G	Sox3.mouse_HMG_1	12	1	+	5.002387006644749	11.570515077312374	AAACAATGTTTTGGTTG
chr1	201028789	201028790	chr1:201028790:C:T	rs78760119	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr1	201028801	201028802	chr1:201028802:C:T	rs12140231	C	T	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr1	201151601	201151602	chr1:201151602:C:A	rs2068152	C	A	C	Sox3.mouse_HMG_1	16	1	-	4.868080123267376	5.833931764024488	AACCAATTTCATAGTTG
chr1	201299993	201299994	chr1:201299994:A:C	rs861272	A	C	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr1	201534226	201534227	chr1:201534227:T:C	rs17469306	T	C	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr1	201773959	201773960	chr1:201773960:A:G	rs190776483	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr1	201859626	201859627	chr1:201859627:T:C	rs12119907	T	C	T	Sox3.mouse_HMG_1	4	1	-	2.004436840965948	-4.8078882510112875	GAACATTTTAATTATTT
chr1	201990752	201990753	chr1:201990753:C:T	rs12030995	C	T	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr1	202220209	202220210	chr1:202220210:T:C	rs12129536	T	C	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr1	202342445	202342446	chr1:202342446:T:C	rs111749026	T	C	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr1	202964863	202964864	chr1:202964864:G:C	rs1418445	G	C	C	Sox3.mouse_HMG_1	13	1	+	6.768421232818562	0.6603154427926459	TGACAATAATATAGTTG
chr1	202964875	202964876	chr1:202964876:T:C	rs115460627	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr1	203043777	203043778	chr1:203043778:G:A	rs4950908	G	A	a	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr1	203077650	203077651	chr1:203077651:C:T	rs3737879	C	T	c	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr1	203188744	203188745	chr1:203188745:C:T	rs946261	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr1	203307924	203307925	chr1:203307925:G:A	rs12085417	G	A	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr1	203329017	203329018	chr1:203329018:T:C	rs184241917	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	203351775	203351776	chr1:203351776:A:T	rs11586935	A	T	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr1	203450594	203450595	chr1:203450595:A:G	rs79715636	A	G	A	Sox3.mouse_HMG_1	5	1	+	6.294745857403772	-0.431387619898683	GGACAATGGAAGTGTTC
chr1	203648262	203648263	chr1:203648263:T:A	rs7540131	T	A	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr1	204288890	204288891	chr1:204288891:T:C	rs4951059	T	C	T	Sox3.mouse_HMG_1	5	1	-	4.341195843002399	-2.384937634300056	AAACAATAACTGTGGTT
chr1	204294055	204294056	chr1:204294056:C:T	rs4951062	C	T	C	Sox3.mouse_HMG_1	6	1	-	2.8857664386717934	2.8857664386717934	AAACAAGGACATTCTCT
chr1	204410323	204410324	chr1:204410324:T:C	rs2089891	T	C	T	Sox3.mouse_HMG_1	0	1	-	2.99619854060472	1.6233818751431814	AAAAAATAGAATTATTA
chr1	204412432	204412433	chr1:204412433:G:A	rs61817883	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr1	204453402	204453403	chr1:204453403:T:C	rs3014597	T	C	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr1	205125273	205125274	chr1:205125274:T:C	rs140161582	T	C	T	Sox3.mouse_HMG_1	1	1	-	1.037912038640553	-3.289521304762137	GAACAATGGTACTATGT
chr1	205274260	205274261	chr1:205274261:C:T	rs74140218	C	T	T	Sox3.mouse_HMG_1	1	1	+	3.2045211330753274	3.9520371030622377	GCACAATGTAAGAGTTT
chr1	205357112	205357113	chr1:205357113:T:C	rs1458590416	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr1	205478193	205478194	chr1:205478194:G:A	rs114285674	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr1	205963785	205963786	chr1:205963786:C:T	rs932060045	C	T	C	Sox3.mouse_HMG_1	11	1	-	4.088429955090162	0.3539525280444151	AAATAATAACAGTGCTA
chr1	205986870	205986871	chr1:205986871:A:G	rs36167682	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr1	206554705	206554706	chr1:206554706:C:T	rs10779474	C	T	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr1	206712233	206712234	chr1:206712234:C:A	rs12127517	C	A	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr1	206890442	206890443	chr1:206890443:T:C	rs143827535	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr1	206955904	206955905	chr1:206955905:A:G	rs577206090	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.8879707227821767	-4.8381627545202806	CCACAATGAAAGTATTA
chr1	206955920	206955921	chr1:206955921:C:T	rs10863962	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	206979330	206979331	chr1:206979331:A:C	rs17352409	A	C	A	Sox3.mouse_HMG_1	10	1	+	5.131498173684485	-1.433157280896777	ATACAATATAAGTGATT
chr1	207232481	207232482	chr1:207232482:A:T	rs11120485	A	T	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr1	207330375	207330376	chr1:207330376:G:A	rs925131	G	A	G	Sox3.mouse_HMG_1	0	1	+	1.7199720981630304	3.0927887636245694	GAACCATTGAATTTTTT
chr1	207646055	207646056	chr1:207646056:C:T	rs12745818	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	207707895	207707896	chr1:207707896:G:A	rs181786864	G	A	.	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr1	207707910	207707911	chr1:207707911:G:A	rs1570565	G	A	.	Sox3.mouse_HMG_1	7	1	-	3.2728005590636635	7.355943589246278	AAACAATCATTTTGTAG
chr1	207751560	207751561	chr1:207751561:G:A	rs2796267	G	A	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	207951858	207951859	chr1:207951859:G:C	rs11118958	G	C	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr1	208251512	208251513	chr1:208251513:A:G	rs12135577	A	G	A	Sox3.mouse_HMG_1	6	1	-	1.0461200708703153	-5.599970698758604	AAACATTGTTAATGTGG
chr1	208317549	208317550	chr1:208317550:T:C	rs2897064	T	C	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr1	208336106	208336107	chr1:208336107:G:T	rs10494896	G	T	G	Sox3.mouse_HMG_1	3	1	-	5.105202299546586	-1.6195111633171122	AAACAATAGTATCTTTG
chr1	208347403	208347404	chr1:208347404:T:A	rs568534943	T	A	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr1	209431388	209431389	chr1:209431389:T:A	rs1157819	T	A	T	Sox3.mouse_HMG_1	15	1	+	3.6990944129216685	0.2022507911291977	CAACAAAGAAATAGTTG
chr1	209671099	209671100	chr1:209671100:C:T	rs76986755	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	209721952	209721953	chr1:209721953:C:G	rs3766619	C	G	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr1	209840747	209840748	chr1:209840748:A:T	rs654470	A	T	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	209936616	209936617	chr1:209936617:A:T	rs2357212	A	T	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	210055543	210055544	chr1:210055544:C:T	rs2743889	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr1	210201440	210201441	chr1:210201441:A:G	rs2485887	A	G	A	Sox3.mouse_HMG_1	6	1	-	2.357788780579831	-4.288301989049089	AAATAATGATAATGTGA
chr1	210332381	210332382	chr1:210332382:A:C	rs589027	A	C	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr1	210398699	210398700	chr1:210398700:G:T	rs2073038	G	T	G	Sox3.mouse_HMG_1	13	1	-	3.168176203686391	3.168176203686391	TACCAATGGAATTCTTT
chr1	210407505	210407506	chr1:210407506:C:T	rs10489382	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	210981746	210981747	chr1:210981747:T:A	rs76809600	T	A	t	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr1	211069581	211069582	chr1:211069582:T:A	rs4951716	T	A	A	Sox3.mouse_HMG_1	1	1	-	8.614060227713557	3.7237213014393573	TATCAATTACAGTGTTT
chr1	211309562	211309563	chr1:211309563:C:G	rs12116749	C	G	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	211416229	211416230	chr1:211416230:C:T	rs12758491	C	T	t	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr1	211602399	211602400	chr1:211602400:T:C	rs7527059	T	C	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr1	211645879	211645880	chr1:211645880:C:A	rs12239534	C	A	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr1	211798244	211798245	chr1:211798245:C:T	rs3738197	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	212529064	212529065	chr1:212529065:T:A	rs1854823	T	A	T	Sox3.mouse_HMG_1	5	1	-	2.9799101782368718	-3.9285448558595393	GAACAACTTTTTTGTTT
chr1	212583020	212583021	chr1:212583021:G:A	rs10863981	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr1	212583050	212583051	chr1:212583051:G:A	rs11811628	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr1	212612234	212612235	chr1:212612235:A:T	rs11571532	A	T	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr1	212728526	212728527	chr1:212728527:T:G	rs6540760	T	G	G	Sox3.mouse_HMG_1	1	1	-	2.7442743131222325	-2.893580583138881	CAACAATGTCAGATTTG
chr1	212862230	212862231	chr1:212862231:A:T	rs10779587	A	T	A	Sox3.mouse_HMG_1	4	1	+	2.401839022397304	-3.9124694041065244	GTACATTTACAGTGTTG
chr1	213126824	213126825	chr1:213126825:T:C	rs6540780	T	C	C	Sox3.mouse_HMG_1	6	1	+	9.604654839334573	2.9585640697056523	CTACAATGGCAGTGTTG
chr1	213375445	213375446	chr1:213375446:C:T	rs2359700	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr1	213589322	213589323	chr1:213589323:A:G	rs6661042	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr1	213659749	213659750	chr1:213659750:G:A	rs7526094	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr1	213986558	213986559	chr1:213986559:A:G	rs7548045	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr1	213994624	213994625	chr1:213994625:G:T	rs56052522	G	T	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr1	214228901	214228902	chr1:214228902:A:G	rs10864089	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr1	214235012	214235013	chr1:214235013:T:A	rs904319	T	A	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr1	214280232	214280233	chr1:214280233:T:A	rs113608074	T	A	t	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	214303952	214303953	chr1:214303953:C:T	rs6687411	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr1	214303959	214303960	chr1:214303960:G:A	rs78905729	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr1	214331585	214331586	chr1:214331586:G:A	rs116424773	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr1	214584458	214584459	chr1:214584459:C:A	rs12565714	C	A	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr1	214683634	214683635	chr1:214683635:A:G	rs74447766	A	G	A	Sox3.mouse_HMG_1	6	1	-	5.077952891037954	-1.5681378785909663	GAACAATAGCAATTTTT
chr1	214683637	214683638	chr1:214683638:G:T	rs75971130	G	T	G	Sox3.mouse_HMG_1	3	1	-	5.077952891037954	-1.6467605718257454	GAACAATAGCAATTTTT
chr1	215040328	215040329	chr1:215040329:A:G	rs12096956	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr1	215043514	215043515	chr1:215043515:A:G	rs79649803	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr1	215160735	215160736	chr1:215160736:G:T	rs2363565	G	T	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr1	215606811	215606812	chr1:215606812:C:G	rs57861859	C	G	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr1	215691409	215691410	chr1:215691410:A:T	rs2797252	A	T	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr1	215793306	215793307	chr1:215793307:C:A	rs61828201	C	A	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr1	215874066	215874067	chr1:215874067:G:A	rs147052842	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	216517944	216517945	chr1:216517945:A:G	rs6604626	A	G	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	216666771	216666772	chr1:216666772:G:T	rs4532915	G	T	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr1	216849219	216849220	chr1:216849220:C:A	rs116944357	C	A	C	Sox3.mouse_HMG_1	9	1	+	3.251878591317138	1.7982342044880375	GAACTAATTCATTGTTT
chr1	216884404	216884405	chr1:216884405:C:T	rs929334696	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr1	216904465	216904466	chr1:216904466:G:A	rs114661314	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr1	216984174	216984175	chr1:216984175:A:T	rs1416536	A	T	T	Sox3.mouse_HMG_1	6	1	-	4.286765260305921	-2.6216897737904894	GAACGATGCTCTTGTTT
chr1	217027540	217027541	chr1:217027541:G:A	rs2377360	G	A	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr1	217159977	217159978	chr1:217159978:G:A	rs1532717	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr1	217314597	217314598	chr1:217314598:C:T	rs11117853	C	T	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr1	217562947	217562948	chr1:217562948:T:C	rs78093990	T	C	T	Sox3.mouse_HMG_1	7	1	-	4.697383391902858	5.193453711680169	GAACAAAAATAGTGTGT
chr1	217577325	217577326	chr1:217577326:T:C	rs12142562	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr1	217876920	217876921	chr1:217876921:T:C	rs11117962	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	218167934	218167935	chr1:218167935:A:G	rs72736848	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr1	218201283	218201284	chr1:218201284:T:A	rs7549503	T	A	T	Sox3.mouse_HMG_1	4	1	-	2.843383257136992	-3.4709251693668337	GAACAATTTCAATTTTA
chr1	218480050	218480051	chr1:218480051:A:G	rs139484956	A	G	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr1	218480082	218480083	chr1:218480083:G:C	rs17047939	G	C	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr1	218586213	218586214	chr1:218586214:C:T	rs111960868	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	218625367	218625368	chr1:218625368:A:G	rs2993030	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr1	218778620	218778621	chr1:218778621:T:C	rs2378014	T	C	T	Sox3.mouse_HMG_1	6	1	+	2.1476049249436113	-4.49848584468531	AAGAAATGGTAATGTTT
chr1	218979557	218979558	chr1:218979558:T:C	rs12562018	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	219173066	219173067	chr1:219173067:C:T	rs7533619	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	219304915	219304916	chr1:219304916:T:C	rs139749105	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	219308516	219308517	chr1:219308517:G:C	rs12566783	G	C	G	Sox3.mouse_HMG_1	13	1	+	5.629426247221701	-0.4786795428042146	AAATAATGGTCTTGTTG
chr1	219310986	219310987	chr1:219310987:G:A	rs10157397	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr1	219311021	219311022	chr1:219311022:G:A	rs75103322	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr1	219371724	219371725	chr1:219371725:T:C	rs74572593	T	C	T	Sox3.mouse_HMG_1	11	1	+	5.57259719573534	-0.48485891322501284	AACCAATCCAATTGTTT
chr1	219405609	219405610	chr1:219405610:G:A	rs6659274	G	A	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr1	219417932	219417933	chr1:219417933:A:G	rs1538744	A	G	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr1	219556081	219556082	chr1:219556082:C:T	rs183526420	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	219556190	219556191	chr1:219556191:T:G	rs11809125	T	G	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	219636004	219636005	chr1:219636005:T:C	rs10863470	T	C	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr1	219659256	219659257	chr1:219659257:A:G	rs6697714	A	G	A	Sox3.mouse_HMG_1	6	1	-	2.132488076619362	-4.513602693009558	AAAGAATGTTTTTGTAT
chr1	219994049	219994050	chr1:219994050:G:C	rs10779393	G	C	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr1	220369910	220369911	chr1:220369911:C:T	rs34228376	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr1	220425929	220425930	chr1:220425930:G:T	rs60224244	G	T	T	Sox3.mouse_HMG_1	15	1	-	2.203152543176304	3.0088107191793165	AAACAATGGCCTTCTCT
chr1	220681534	220681535	chr1:220681535:C:A	rs116446175	C	A	c	Sox3.mouse_HMG_1	8	1	+	2.236550214214097	3.3691106775931736	GTAGAATTCCAGTGTTT
chr1	220692764	220692765	chr1:220692765:C:T	rs6702417	C	T	t	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr1	220883047	220883048	chr1:220883048:A:T	rs868058	A	T	T	Sox3.mouse_HMG_1	2	1	+	5.720870684334107	-0.1812160516226563	AAATAATTTTATTCTTT
chr1	220893760	220893761	chr1:220893761:T:G	rs2807863	T	G	G	Sox3.mouse_HMG_1	16	1	+	6.810986156992703	5.845134516235591	TTACAATGTTAGTGTAT
chr1	220937487	220937488	chr1:220937488:G:C	rs17009078	G	C	G	Sox3.mouse_HMG_1	3	1	-	2.445800478309163	-4.46123454134849	ACACAATGTTATTTTAA
chr1	221241147	221241148	chr1:221241148:C:T	rs35316503	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr1	221598335	221598336	chr1:221598336:T:C	rs12081273	T	C	C	Sox3.mouse_HMG_1	4	1	-	2.9037538179243496	-3.9085712740528864	TAACAATGAAAGACTTT
chr1	221713084	221713085	chr1:221713085:G:A	rs139504652	G	A	G	Sox3.mouse_HMG_1	1	1	+	4.68884076968208	9.016274113084771	GGTCAATGTCAGTGTTG
chr1	221713088	221713089	chr1:221713089:A:G	rs149306847	A	G	A	Sox3.mouse_HMG_1	5	1	+	4.68884076968208	-2.0372927076203786	GGTCAATGTCAGTGTTG
chr1	221782699	221782700	chr1:221782700:C:A	rs144389361	C	A	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	221782743	221782744	chr1:221782744:G:A	rs4073062	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	221794522	221794523	chr1:221794523:A:G	rs4846725	A	G	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr1	222415963	222415964	chr1:222415964:T:C	rs116124097	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr1	222545088	222545089	chr1:222545089:T:G	rs17463538	T	G	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr1	222816417	222816418	chr1:222816418:T:C	rs61838109	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr1	222956711	222956712	chr1:222956712:T:C	rs61837491	T	C	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	222975888	222975889	chr1:222975889:C:T	rs2609366	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr1	223338792	223338793	chr1:223338793:A:G	rs61838240	A	G	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr1	223771795	223771796	chr1:223771796:C:G	rs16842168	C	G	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr1	223996559	223996560	chr1:223996560:T:C	rs112643040	T	C	-	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr1	224073596	224073597	chr1:224073597:T:C	rs6696008	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.735834712041024	-3.374056203207683	AAGCAATATTTTTGTAA
chr1	224498879	224498880	chr1:224498880:C:T	rs56081029	C	T	C	Sox3.mouse_HMG_1	2	1	-	5.720131326193605	10.128066305174064	GAGCAATGTAAGTGTCT
chr1	224644691	224644692	chr1:224644692:C:T	rs6680134	C	T	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr1	224644701	224644702	chr1:224644702:T:G	chr1:224644702:T:G	T	G	T	Sox3.mouse_HMG_1	7	1	-	3.0668076347675894	-2.057814180379875	GAAGAAAAAAATTGTTT
chr1	224719819	224719820	chr1:224719820:A:G	rs6426152	A	G	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr1	224766303	224766304	chr1:224766304:T:C	rs974151776	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr1	226070020	226070021	chr1:226070021:A:G	rs4653440	A	G	a	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr1	226101283	226101284	chr1:226101284:G:T	rs1009834308	G	T	G	Sox3.mouse_HMG_1	0	1	-	2.5763864443861517	4.165977956738352	CAGCAAAACCAGTGTTG
chr1	226101300	226101301	chr1:226101301:T:C	rs59361210	T	C	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr1	226130139	226130140	chr1:226130140:G:T	rs3887559	G	T	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr1	226308271	226308272	chr1:226308272:A:T	rs185301171	A	T	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr1	226450749	226450750	chr1:226450750:T:G	rs7539294	T	G	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr1	226510858	226510859	chr1:226510859:A:G	rs75670590	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.0897275293231368	-3.556363240305782	GAACTATTGTAATGTTG
chr1	226546273	226546274	chr1:226546274:A:G	rs2050977	A	G	A	Sox3.mouse_HMG_1	2	1	+	2.0773992663245844	-2.330535712655876	AAAAAATGGTTGTGTTA
chr1	226559627	226559628	chr1:226559628:G:A	rs6679966	G	A	g	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr1	226859718	226859719	chr1:226859719:A:T	rs78256943	A	T	A	Sox3.mouse_HMG_1	1	1	+	7.513835495167816	2.6234965688936147	GAACAAAATCAGTGTTG
chr1	226859749	226859750	chr1:226859750:G:A	rs1295651	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr1	226990029	226990030	chr1:226990030:A:T	rs1186	A	T	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr1	227131351	227131352	chr1:227131352:T:C	rs74143306	T	C	T	Sox3.mouse_HMG_1	12	1	+	1.136408430040623	-5.070057155177229	CTACATTGCAAGTGTTG
chr1	227131370	227131371	chr1:227131371:A:G	rs74475302	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr1	227266429	227266430	chr1:227266430:G:A	rs1464076	G	A	G	Sox3.mouse_HMG_1	0	1	-	3.1336861011468526	2.700123288182807	CAGCAGTGTCAGTGTTA
chr1	227395895	227395896	chr1:227395896:C:T	rs3014273	C	T	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr1	227754675	227754676	chr1:227754676:C:T	rs141540241	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr1	228051642	228051643	chr1:228051643:G:A	rs882451	G	A	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	228515441	228515442	chr1:228515442:G:A	rs1019384456	G	A	G	Sox3.mouse_HMG_1	7	1	-	1.3553404180093067	5.438483448191925	AGACAATCCCATTTTTA
chr1	228738040	228738041	chr1:228738041:A:C	rs2295255	A	C	A	Sox3.mouse_HMG_1	2	1	+	2.7434375982021293	-3.6818972815191837	AAAAAATTTCAGTGATG
chr1	228821572	228821573	chr1:228821573:G:T	rs241341	G	T	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	228848761	228848762	chr1:228848762:T:C	rs56300457	T	C	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr1	228900706	228900707	chr1:228900707:T:A	rs13375821	T	A	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr1	228901515	228901516	chr1:228901516:A:C	rs6659427	A	C	A	Sox3.mouse_HMG_1	6	1	-	2.2924582688511688	-4.6159967652452405	CTGCAATGACAGTGTAA
chr1	228911258	228911259	chr1:228911259:C:A	rs74423728	C	A	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr1	228965081	228965082	chr1:228965082:C:T	rs519791	C	T	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr1	229101096	229101097	chr1:229101097:C:T	rs185355198	C	T	T	Sox3.mouse_HMG_1	11	1	-	0.42649738401851217	-3.3079800430272353	AGGCAATAGCAGTGGTG
chr1	229101097	229101098	chr1:229101098:T:C	rs190204259	T	C	T	Sox3.mouse_HMG_1	10	1	-	0.42649738401851217	-6.481747774952827	AGGCAATAGCAGTGGTG
chr1	229171168	229171169	chr1:229171169:C:T	rs16849500	C	T	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	229172103	229172104	chr1:229172104:T:G	rs530525253	T	G	T	Sox3.mouse_HMG_1	15	1	-	2.4690890505943845	1.6634308745913722	GAACAATGGCAGTGCAC
chr1	229318190	229318191	chr1:229318191:T:C	rs112701288	T	C	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr1	229428729	229428730	chr1:229428730:T:C	rs185003375	T	C	T	Sox3.mouse_HMG_1	15	1	+	0.710795887582159	-3.591705910213325	AAGAAATGGCATTTTTG
chr1	229582368	229582369	chr1:229582369:T:C	rs182946442	T	C	T	Sox3.mouse_HMG_1	9	1	+	2.9127013755301863	2.948407500414754	AAACATTAATATTGAGT
chr1	229582387	229582388	chr1:229582388:G:T	rs12042088	G	T	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr1	230209550	230209551	chr1:230209551:C:G	rs12058500	C	G	C	Sox3.mouse_HMG_1	8	1	-	5.329330765660871	5.223183777292431	CAACAATAGATTTGTAT
chr1	230209578	230209579	chr1:230209579:T:C	rs11122465	T	C	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr1	230590077	230590078	chr1:230590078:G:A	rs853459	G	A	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr1	230860723	230860724	chr1:230860724:T:C	rs1202574	T	C	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr1	231140831	231140832	chr1:231140832:A:G	rs6669723	A	G	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr1	231337949	231337950	chr1:231337950:A:G	rs111398285	A	G	A	Sox3.mouse_HMG_1	10	1	+	0.4416272688780155	-6.466617890093324	CAGCAATGCCATCGGTT
chr1	231387977	231387978	chr1:231387978:G:C	rs2790887	G	C	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr1	231388010	231388011	chr1:231388011:G:A	rs2808592	G	A	A	Sox3.mouse_HMG_1	13	1	+	8.117190479132981	2.0090846891070653	GATCAATATCATTGTAT
chr1	231523056	231523057	chr1:231523057:A:G	rs2808578	A	G	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr1	231846524	231846525	chr1:231846525:G:A	rs11588799	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr1	231918824	231918825	chr1:231918825:A:G	rs6687338	A	G	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr1	232140459	232140460	chr1:232140460:G:A	rs12078605	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr1	232383509	232383510	chr1:232383510:G:T	rs17176514	G	T	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	232471303	232471304	chr1:232471304:T:A	rs12116796	T	A	T	Sox3.mouse_HMG_1	11	1	+	5.925696645455976	0.06324055154934877	AAACAAAGATATTTTTG
chr1	232472239	232472240	chr1:232472240:C:T	rs2225041	C	T	C	Sox3.mouse_HMG_1	8	1	-	2.364840570009715	3.391254045020351	AGACAACTGCATTGTCT
chr1	232555959	232555960	chr1:232555960:G:A	rs140725963	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr1	232563194	232563195	chr1:232563195:C:G	rs12564218	C	G	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr1	232787570	232787571	chr1:232787571:A:C	rs2795472	A	C	A	Sox3.mouse_HMG_1	4	1	+	1.2986092340591424	-5.426704480928465	AAACAATAGCTTTATAG
chr1	232806281	232806282	chr1:232806282:A:G	rs61739198	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr1	232869049	232869050	chr1:232869050:G:A	rs115414642	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr1	232869090	232869091	chr1:232869091:C:T	chr1:232869091:C:T	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	233021398	233021399	chr1:233021399:C:T	rs770445818	C	T	C	Sox3.mouse_HMG_1	3	1	+	3.089317743379153	-2.8934583747551663	AAACAATATAAGTCCTT
chr1	233090610	233090611	chr1:233090611:G:A	rs72763910	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr1	233114093	233114094	chr1:233114094:A:G	rs183467249	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr1	233411970	233411971	chr1:233411971:G:C	rs12128164	G	C	G	Sox3.mouse_HMG_1	0	1	+	0.7062482830651049	0.48947343617444417	GAGCCATGGCATTGTGA
chr1	233582020	233582021	chr1:233582021:C:T	rs17207473	C	T	c	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr1	233611343	233611344	chr1:233611344:T:G	rs528232	T	G	t	Sox3.mouse_HMG_1	8	1	-	4.888135660425952	3.7555751970468765	AAACAATAAATTAGTTG
chr1	233801591	233801592	chr1:233801592:G:A	rs6668733	G	A	g	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr1	234188747	234188748	chr1:234188748:G:A	rs477305	G	A	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr1	234188786	234188787	chr1:234188787:C:A	rs149653990	C	A	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr1	234234906	234234907	chr1:234234907:G:A	rs10910390	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr1	234317061	234317062	chr1:234317062:T:A	rs61824466	T	A	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr1	234372957	234372958	chr1:234372958:C:T	rs12070750	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr1	234428456	234428457	chr1:234428457:C:T	rs10797547	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr1	234428458	234428459	chr1:234428459:G:C	rs10797548	G	C	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr1	234500043	234500044	chr1:234500044:A:C	rs2175591	A	C	A	Sox3.mouse_HMG_1	12	1	-	1.3702783653697872	-5.197849705297836	GGACAAGAACAGTGTTC
chr1	234503078	234503079	chr1:234503079:C:T	rs497019	C	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr1	234606378	234606379	chr1:234606379:T:C	rs918895178	T	C	T	Sox3.mouse_HMG_1	0	1	-	4.265072909881086	2.892256244419547	ATACAATTCCAGTGATG
chr1	234617117	234617118	chr1:234617118:G:A	rs148104957	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr1	234728303	234728304	chr1:234728304:G:A	rs150059746	G	A	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	234728320	234728321	chr1:234728321:A:T	rs1660558	A	T	A	Sox3.mouse_HMG_1	14	1	-	5.163221469461773	-0.12225587923331932	AAACAATGAACCTGTTG
chr1	234744142	234744143	chr1:234744143:A:G	rs3009958	A	G	G	Sox3.mouse_HMG_1	7	1	+	6.149086728945326	6.645157048722636	AAACAATACCCATGTTT
chr1	234961492	234961493	chr1:234961493:C:T	rs61837322	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr1	235020509	235020510	chr1:235020510:G:A	rs28679445	G	A	g	Sox3.mouse_HMG_1	13	1	+	1.4059174662426086	-4.702188323783307	AAACAATAACAGGGCAT
chr1	235024313	235024314	chr1:235024314:T:C	rs144168055	T	C	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr1	235048381	235048382	chr1:235048382:C:T	rs75713901	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr1	235048385	235048386	chr1:235048386:G:A	rs543302145	G	A	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr1	235063046	235063047	chr1:235063047:C:T	rs36139305	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr1	235193225	235193226	chr1:235193226:G:A	rs113865922	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	235469150	235469151	chr1:235469151:A:C	chr1:235469151:A:C	A	C	A	Sox3.mouse_HMG_1	14	1	-	5.585782140779772	-0.8408671110022261	AAACAATGGCAGGGTAA
chr1	235564632	235564633	chr1:235564633:T:C	rs608735	T	C	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr1	235564669	235564670	chr1:235564670:T:A	rs12076055	T	A	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr1	235877761	235877762	chr1:235877762:C:T	rs6673218	C	T	T	Sox3.mouse_HMG_1	7	1	-	2.095862341628246	1.5997920218509352	AAGCGATGCAATTGTCT
chr1	235976593	235976594	chr1:235976594:T:G	rs1048311	T	G	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr1	236152190	236152191	chr1:236152191:G:C	rs74900028	G	C	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr1	236399577	236399578	chr1:236399578:G:T	rs10925116	G	T	G	Sox3.mouse_HMG_1	11	1	+	4.706249858090815	6.834228524951695	AAACAATGATGGTGGTT
chr1	236552541	236552542	chr1:236552542:A:G	rs1042310	A	G	G	Sox3.mouse_HMG_1	6	1	-	4.220755345288688	-2.4253354243402323	ATACAATTATAGTGGTG
chr1	236562075	236562076	chr1:236562076:A:C	rs766124	A	C	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr1	236688834	236688835	chr1:236688835:G:A	rs79277266	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	236688849	236688850	chr1:236688850:A:G	rs74727372	A	G	G	Sox3.mouse_HMG_1	7	1	+	5.588329222833776	6.084399542611086	GTAAAATACCATTGTTT
chr1	236798825	236798826	chr1:236798826:T:C	rs183031197	T	C	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr1	236866277	236866278	chr1:236866278:T:C	rs12040912	T	C	t	Sox3.mouse_HMG_1	5	1	-	2.3521295250792726	-4.374003952223185	ATACAATAATAAGGTTT
chr1	237011086	237011087	chr1:237011087:T:C	rs147844664	T	C	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr1	237191565	237191566	chr1:237191566:T:C	rs139887903	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.194740686682606	-4.531392790619852	CAGCAAAAGAAGTGTTT
chr1	237191572	237191573	chr1:237191573:G:A	rs114859331	G	A	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr1	237310175	237310176	chr1:237310176:G:C	rs11582513	G	C	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr1	237391152	237391153	chr1:237391153:G:A	rs12082285	G	A	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	237562244	237562245	chr1:237562245:T:C	rs2779394	T	C	C	Sox3.mouse_HMG_1	2	1	-	3.1446615809496135	-1.2632733980308457	AAACAATTCAAATCTTG
chr1	237682630	237682631	chr1:237682631:A:G	rs12735668	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr1	237714323	237714324	chr1:237714324:T:A	rs1329945675	T	A	T	Sox3.mouse_HMG_1	9	1	+	5.5374013163526845	4.119463054408153	TAACAATCATATAGTTA
chr1	237748923	237748924	chr1:237748924:A:G	rs2685291	A	G	A	Sox3.mouse_HMG_1	10	1	+	5.1692517388287555	-1.7389934201425818	TAACATTTACATTGTGT
chr1	237759752	237759753	chr1:237759753:C:T	rs2253831	C	T	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr1	237970435	237970436	chr1:237970436:C:T	rs1490277	C	T	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr1	238175338	238175339	chr1:238175339:T:C	rs1856468	T	C	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	238180416	238180417	chr1:238180417:A:G	rs61832270	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	238806795	238806796	chr1:238806796:T:C	rs12096431	T	C	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr1	239128655	239128656	chr1:239128656:C:T	rs115121522	C	T	C	Sox3.mouse_HMG_1	9	1	+	1.6847517472925857	1.6490456224080179	TAACAAATGCAGTGTAA
chr1	239213160	239213161	chr1:239213161:A:G	rs539626261	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.341763721729536	-1.715692387230817	GAAAAATGGAATTGATT
chr1	239405590	239405591	chr1:239405591:A:G	rs72754656	A	G	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr1	239508172	239508173	chr1:239508173:T:C	rs6675823	T	C	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr1	239675483	239675484	chr1:239675484:T:C	rs73109156	T	C	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	239678566	239678567	chr1:239678567:A:G	rs111506909	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr1	239831605	239831606	chr1:239831606:T:G	rs685548	T	G	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr1	240194777	240194778	chr1:240194778:A:G	rs1020710	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr1	240288933	240288934	chr1:240288934:C:T	rs60909204	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr1	240290327	240290328	chr1:240290328:G:A	rs10754697	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr1	240349859	240349860	chr1:240349860:C:G	rs72767906	C	G	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr1	240510498	240510499	chr1:240510499:T:C	rs35060706	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr1	240539759	240539760	chr1:240539760:C:T	rs80285190	C	T	C	Sox3.mouse_HMG_1	3	1	+	3.564909572358947	-2.4178665457753765	CTGCAATGTTATTGTAA
chr1	240769204	240769205	chr1:240769205:G:A	rs545506989	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	241807216	241807217	chr1:241807217:G:A	rs4658754	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr1	241917956	241917957	chr1:241917957:T:G	rs7518858	T	G	t	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr1	242224926	242224927	chr1:242224927:A:G	rs10926664	A	G	G	Sox3.mouse_HMG_1	16	1	-	1.6347978507877818	-1.9669988148332005	GGACGATGACACTGTTT
chr1	242224962	242224963	chr1:242224963:T:A	rs10926665	T	A	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr1	242398586	242398587	chr1:242398587:C:T	rs2810041	C	T	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr1	242473963	242473964	chr1:242473964:T:G	rs10926749	T	G	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr1	243505966	243505967	chr1:243505967:A:G	rs137944665	A	G	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr1	244061685	244061686	chr1:244061686:G:A	rs143356038	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr1	244089106	244089107	chr1:244089107:C:G	rs2453197	C	G	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr1	244252210	244252211	chr1:244252211:A:G	rs10754822	A	G	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr1	244299306	244299307	chr1:244299307:G:T	rs372904952	G	T	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr1	244301145	244301146	chr1:244301146:G:C	rs149851870	G	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr1	244352075	244352076	chr1:244352076:C:T	rs10803199	C	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr1	244356554	244356555	chr1:244356555:C:G	rs10803202	C	G	G	Sox3.mouse_HMG_1	11	1	-	6.602301283031456	2.6728238409319833	TAACAATACAAGTTTTT
chr1	244678890	244678891	chr1:244678891:A:C	rs183941350	A	C	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr1	244971512	244971513	chr1:244971513:T:G	rs6698137	T	G	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr1	245067407	245067408	chr1:245067408:G:A	rs1538165	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr1	245169659	245169660	chr1:245169660:A:G	rs1125021	A	G	a	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr1	245169661	245169662	chr1:245169662:G:C	rs1010508	G	C	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	245218699	245218700	chr1:245218700:A:G	rs10924121	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr1	245237745	245237746	chr1:245237746:G:C	rs3008472	G	C	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr1	245432349	245432350	chr1:245432350:A:G	rs549315600	A	G	a	Sox3.mouse_HMG_1	10	1	+	0.5825297957620137	-6.325715363209327	GAAAAAAAGCAGTGTTG
chr1	245449481	245449482	chr1:245449482:A:G	rs2298106	A	G	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr1	245691162	245691163	chr1:245691163:C:T	rs12143468	C	T	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr1	245691200	245691201	chr1:245691201:G:C	rs6701023	G	C	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr1	245801867	245801868	chr1:245801868:C:T	rs2791397	C	T	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr1	246048889	246048890	chr1:246048890:T:C	rs2153024	T	C	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr1	246091673	246091674	chr1:246091674:T:C	rs74569312	T	C	T	Sox3.mouse_HMG_1	8	1	+	2.6198172108980113	2.307077985987469	AGACAATGTCTGTGTAT
chr1	246503693	246503694	chr1:246503694:G:A	rs10924758	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr1	247295854	247295855	chr1:247295855:T:C	rs17664745	T	C	t	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr1	247449132	247449133	chr1:247449133:A:T	rs4925547	A	T	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr1	247529186	247529187	chr1:247529187:G:C	rs1573250	G	C	N	Sox3.mouse_HMG_1	13	1	+	1.5958922016458106	-4.512213588380105	ACAGAATAATATTGTGG
chr1	248889006	248889007	chr1:248889007:A:G	rs12752429	A	G	G	Sox3.mouse_HMG_1	14	1	-	2.5441566479442717	-3.5657342673044363	CATCAAAGCCAGTGTTT
chr10	302905	302906	chr10:302906:T:C	rs2380150	T	C	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr10	481998	481999	chr10:481999:C:A	rs55973534	C	A	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr10	491367	491368	chr10:491368:G:A	rs117644139	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr10	944202	944203	chr10:944203:C:T	rs61833265	C	T	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr10	1057649	1057650	chr10:1057650:A:G	rs35657988	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.7157691108699265	-1.3416869980904258	GTACATTATTATTGTTG
chr10	1109806	1109807	chr10:1109807:T:C	rs36051896	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr10	1153730	1153731	chr10:1153731:C:T	rs4450107	C	T	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr10	1181656	1181657	chr10:1181657:A:G	rs10794729	A	G	G	Sox3.mouse_HMG_1	4	1	+	5.264672704730822	-1.547652387246414	GCACAATGTTATTCTTG
chr10	1299066	1299067	chr10:1299067:T:A	rs2387644	T	A	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr10	1466163	1466164	chr10:1466164:C:T	rs185936372	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr10	1475940	1475941	chr10:1475941:G:A	rs2813409	G	A	g	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr10	1583098	1583099	chr10:1583099:C:T	rs10794765	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr10	1652554	1652555	chr10:1652555:C:T	rs11814112	C	T	c	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr10	1686831	1686832	chr10:1686832:C:T	rs7896371	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr10	1754699	1754700	chr10:1754700:G:C	rs191539354	G	C	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr10	1754700	1754701	chr10:1754701:C:T	rs183798758	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr10	1754716	1754717	chr10:1754717:A:G	rs916295334	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr10	2202223	2202224	chr10:2202224:T:A	rs7896451	T	A	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr10	2207544	2207545	chr10:2207545:G:A	rs7073545	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr10	2221940	2221941	chr10:2221941:G:A	rs12411758	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr10	2364081	2364082	chr10:2364082:C:A	rs826471	C	A	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr10	2384664	2384665	chr10:2384665:C:T	rs826497	C	T	c	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr10	2593107	2593108	chr10:2593108:A:C	rs72773007	A	C	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr10	2632265	2632266	chr10:2632266:C:T	rs6601818	C	T	C	Sox3.mouse_HMG_1	0	1	+	3.047785941760579	2.614223128796533	CATCAATGCTAGTTTTT
chr10	2915093	2915094	chr10:2915094:A:G	rs7091014	A	G	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr10	3072041	3072042	chr10:3072042:A:G	rs11598339	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr10	3349428	3349429	chr10:3349429:A:G	rs6602045	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr10	3472452	3472453	chr10:3472453:T:G	rs77377630	T	G	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr10	3873866	3873867	chr10:3873867:T:C	chr10:3873867:T:C	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr10	3914333	3914334	chr10:3914334:G:T	chr10:3914334:G:T	G	T	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr10	3920132	3920133	chr10:3920133:T:G	rs72772964	T	G	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr10	3971729	3971730	chr10:3971730:C:T	rs10904151	C	T	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr10	4086278	4086279	chr10:4086279:C:T	rs112766856	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr10	4202245	4202246	chr10:4202246:G:A	rs113834583	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr10	4202260	4202261	chr10:4202261:T:A	rs142019703	T	A	T	Sox3.mouse_HMG_1	6	1	+	3.5454756369358953	-3.362979397160514	AAAAAATTGTATTTTTG
chr10	4202262	4202263	chr10:4202263:G:T	rs1480103833	G	T	G	Sox3.mouse_HMG_1	8	1	+	3.5454756369358953	3.752067873477998	AAAAAATTGTATTTTTG
chr10	4241642	4241643	chr10:4241643:G:A	rs12246351	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr10	4246917	4246918	chr10:4246918:A:T	rs10751964	A	T	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr10	4247026	4247027	chr10:4247027:T:A	rs115615743	T	A	T	Sox3.mouse_HMG_1	9	1	-	2.697287798031242	4.115226059975774	TGACAATGAAATCGTAT
chr10	4389711	4389712	chr10:4389712:G:T	rs72766495	G	T	G	Sox3.mouse_HMG_1	13	1	+	0.2665918810221197	-6.102527734373416	TGACCATGCCAGTGTTC
chr10	4450419	4450420	chr10:4450420:A:G	rs1751291	A	G	A	Sox3.mouse_HMG_1	5	1	+	0.978637498631903	-5.747495978670553	AAATAATGACTGTGTCT
chr10	4472251	4472252	chr10:4472252:G:A	rs10904264	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr10	4520062	4520063	chr10:4520063:T:G	rs146770438	T	G	t	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr10	4533614	4533615	chr10:4533615:C:T	rs313478	C	T	C	Sox3.mouse_HMG_1	9	1	+	1.2204916076892864	1.1847854828047186	GCACATTTACAGTGTTA
chr10	4561586	4561587	chr10:4561587:C:G	rs58920639	C	G	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr10	4733773	4733774	chr10:4733774:A:T	rs60704781	A	T	A	Sox3.mouse_HMG_1	10	1	+	2.3493551527697574	-4.463579826397257	AAACAATGATAAATTTT
chr10	5009339	5009340	chr10:5009340:G:A	rs1937863	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr10	5009378	5009379	chr10:5009379:C:A	rs113767262	C	A	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr10	5018407	5018408	chr10:5018408:G:T	rs551705786	G	T	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr10	5018440	5018441	chr10:5018441:C:T	rs1937888	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr10	5128420	5128421	chr10:5128421:T:A	rs11517339	T	A	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr10	5285712	5285713	chr10:5285713:A:G	rs9423591	A	G	A	Sox3.mouse_HMG_1	6	1	-	2.2378229151592786	-4.408267854469639	GAACAATGTATTTCTTA
chr10	5292383	5292384	chr10:5292384:C:A	rs9423594	C	A	c	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr10	5323620	5323621	chr10:5323621:T:C	rs75560566	T	C	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr10	5514564	5514565	chr10:5514565:G:A	rs771983445	G	A	G	Sox3.mouse_HMG_1	0	1	+	1.443703986500203	2.8165206519617425	GTACAATCTCACTGTTT
chr10	5549971	5549972	chr10:5549972:T:C	rs9423650	T	C	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr10	5564685	5564686	chr10:5564686:T:C	rs4880734	T	C	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr10	5846349	5846350	chr10:5846350:C:T	rs12242149	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr10	5904688	5904689	chr10:5904689:C:T	rs76054567	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr10	6025339	6025340	chr10:6025340:C:A	rs10905634	C	A	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr10	6056860	6056861	chr10:6056861:T:C	rs706779	T	C	T	Sox3.mouse_HMG_1	14	1	+	8.9689406830905	2.8590497678417925	AGACAAGGACATTGTTT
chr10	6083694	6083695	chr10:6083695:G:A	rs564255085	G	A	G	Sox3.mouse_HMG_1	9	1	-	0.07607626439527498	0.04037013951070717	CAACAAGACCGGTGTTG
chr10	6111333	6111334	chr10:6111334:G:A	rs6602450	G	A	g	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr10	6491914	6491915	chr10:6491915:A:G	rs3815975	A	G	A	Sox3.mouse_HMG_1	12	1	-	11.306435034088535	5.099969448870683	ACACAATGCCAGTGTTT
chr10	6491937	6491938	chr10:6491938:C:T	rs3815974	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr10	6564323	6564324	chr10:6564324:A:G	rs4748152	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr10	6625653	6625654	chr10:6625654:T:C	rs11253683	T	C	T	Sox3.mouse_HMG_1	9	1	+	5.364910408150611	5.400616533035181	AAACAATGATAGGATTT
chr10	6669228	6669229	chr10:6669229:C:G	rs11813112	C	G	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr10	6916864	6916865	chr10:6916865:C:A	rs17142209	C	A	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr10	7090962	7090963	chr10:7090963:G:A	rs1192347530	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr10	7121602	7121603	chr10:7121603:A:G	rs61836685	A	G	A	Sox3.mouse_HMG_1	4	1	+	4.5539173414742296	-2.2584077505030056	TAACAATAATATAATTA
chr10	7494344	7494345	chr10:7494345:C:T	rs2388139	C	T	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr10	7538318	7538319	chr10:7538319:A:G	rs76018116	A	G	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr10	7585579	7585580	chr10:7585580:G:A	rs11255205	G	A	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr10	7598739	7598740	chr10:7598740:T:A	rs11814502	T	A	T	Sox3.mouse_HMG_1	10	1	-	9.213642435531865	2.400707456364852	TTACAATAAAAGTGTTT
chr10	7681181	7681182	chr10:7681182:C:T	rs7915933	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr10	7686803	7686804	chr10:7686804:C:T	rs72781022	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr10	8060209	8060210	chr10:8060210:G:A	chr10:8060210:G:A	G	A	G	Sox3.mouse_HMG_1	8	1	-	6.2928146628684765	6.605553887779017	AAACAATGCAACTGTCG
chr10	8105684	8105685	chr10:8105685:G:A	rs873461	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr10	8152787	8152788	chr10:8152788:T:C	rs10905291	T	C	T	Sox3.mouse_HMG_1	9	1	+	6.097343817210998	6.1330499420955675	AAACAATTATATGGTGA
chr10	8181554	8181555	chr10:8181555:A:G	rs2789623	A	G	G	Sox3.mouse_HMG_1	4	1	+	0.8434355248969604	-5.9688895670802795	CGGCAAAGACAGTGTTT
chr10	8183543	8183544	chr10:8183544:C:T	rs1329124136	C	T	C	Sox3.mouse_HMG_1	9	1	-	8.32813415150153	12.91113377122286	AAACAATTAGATTGTCT
chr10	8420475	8420476	chr10:8420476:T:C	rs2993385	T	C	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr10	8428423	8428424	chr10:8428424:C:T	rs2646425	C	T	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr10	8460877	8460878	chr10:8460878:G:T	rs17143715	G	T	G	Sox3.mouse_HMG_1	13	1	+	2.0399413987397836	-4.329178216655751	TGGCAATCTCATTGTTG
chr10	8473350	8473351	chr10:8473351:G:C	rs140049889	G	C	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr10	8513234	8513235	chr10:8513235:G:A	rs72775231	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	8649691	8649692	chr10:8649692:G:A	rs73633625	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr10	8702057	8702058	chr10:8702058:A:G	rs10905453	A	G	G	Sox3.mouse_HMG_1	16	1	-	3.5255476677265314	-0.07624899789445072	AAACATTTTCAGTGATT
chr10	8711657	8711658	chr10:8711658:A:C	rs4320867	A	C	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr10	8894176	8894177	chr10:8894177:A:G	rs290903	A	G	A	Sox3.mouse_HMG_1	15	1	-	0.6148633405185758	-3.6876384572769076	AAGCAAGGATAGTGCTT
chr10	8894198	8894199	chr10:8894199:C:T	rs11255968	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr10	9043662	9043663	chr10:9043663:A:T	rs2797270	A	T	T	Sox3.mouse_HMG_1	10	1	+	2.8823509769258484	-3.930584002241166	GGAAAATATAAGTGTTT
chr10	9043671	9043672	chr10:9043672:T:C	rs17349136	T	C	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr10	9110741	9110742	chr10:9110742:T:C	rs17364530	T	C	T	Sox3.mouse_HMG_1	10	1	-	2.0486554833659163	-4.859589675605422	TTGCAATGCCATTGTCA
chr10	9151229	9151230	chr10:9151230:A:C	rs1149932	A	C	A	Sox3.mouse_HMG_1	7	1	+	2.5258166256993144	-2.5988051894481474	AAATAACAGCAGTGTTA
chr10	9274618	9274619	chr10:9274619:G:C	rs72786677	G	C	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr10	9501213	9501214	chr10:9501214:A:C	rs7894116	A	C	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr10	9790136	9790137	chr10:9790137:C:A	rs17441826	C	A	C	Sox3.mouse_HMG_1	8	1	+	2.419897210821896	3.552457674200972	GCACAGTACAATTGTTG
chr10	9947585	9947586	chr10:9947586:T:A	rs1339690	T	A	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr10	10045344	10045345	chr10:10045345:G:T	rs79249198	G	T	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr10	10094202	10094203	chr10:10094203:C:T	rs12264789	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr10	10094689	10094690	chr10:10094690:T:G	rs12355401	T	G	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr10	10094702	10094703	chr10:10094703:C:T	rs7090967	C	T	C	Sox3.mouse_HMG_1	12	1	+	1.8556652187047409	8.062130803922592	AAACAATCTCATCGTCA
chr10	10120925	10120926	chr10:10120926:C:T	rs12246665	C	T	T	Sox3.mouse_HMG_1	3	1	+	3.1133913145489305	-2.869384803585388	AAACAATTTAATCCTTG
chr10	10293872	10293873	chr10:10293873:T:C	rs79335400	T	C	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr10	10490209	10490210	chr10:10490210:A:C	rs2488163	A	C	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr10	10562072	10562073	chr10:10562073:A:G	rs72787661	A	G	A	Sox3.mouse_HMG_1	12	1	-	2.51708930883343	-3.689376276384422	AACCAACAGCAGTGTTG
chr10	10587450	10587451	chr10:10587451:A:G	rs11256693	A	G	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr10	10752946	10752947	chr10:10752947:T:C	rs10905808	T	C	T	Sox3.mouse_HMG_1	13	1	-	2.3024872895078428	8.41059307953376	GAACAATGGTAATATAT
chr10	10819547	10819548	chr10:10819548:T:C	rs11818010	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr10	10824615	10824616	chr10:10824616:A:G	rs7897651	A	G	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr10	11104852	11104853	chr10:11104853:G:C	rs4750018	G	C	g	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr10	11163563	11163564	chr10:11163564:G:A	rs192009777	G	A	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr10	11179796	11179797	chr10:11179797:T:G	rs79144548	T	G	T	Sox3.mouse_HMG_1	11	1	+	2.523318758332899	0.3953400914720189	GAACAACTGCATTGTAC
chr10	11203141	11203142	chr10:11203142:T:C	rs939410347	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.156556263178849	-3.9533346520698585	GAAAAATGAAAGTTTTT
chr10	11829702	11829703	chr10:11829703:C:T	rs1268582735	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr10	11994654	11994655	chr10:11994655:G:C	rs12416026	G	C	G	Sox3.mouse_HMG_1	2	1	-	1.5802137379320773	3.597613638672928	CACCAAGTATAGTGTTT
chr10	12242397	12242398	chr10:12242398:A:T	rs117334547	A	T	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr10	12347180	12347181	chr10:12347181:C:T	rs2997063	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr10	12498800	12498801	chr10:12498801:C:T	rs11257832	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr10	12508566	12508567	chr10:12508567:C:T	rs112324390	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr10	12747403	12747404	chr10:12747404:T:C	rs59225986	T	C	c	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr10	12748128	12748129	chr10:12748129:A:G	rs17152194	A	G	a	Sox3.mouse_HMG_1	4	1	+	6.379844307731878	-0.4324807842453545	GAACAATGCAATTTTAT
chr10	13241806	13241807	chr10:13241807:A:G	rs17152990	A	G	A	Sox3.mouse_HMG_1	11	1	-	3.140563634577366	-2.916892474382986	AGTCAATGCCATTGTCA
chr10	13740604	13740605	chr10:13740605:G:A	rs6602679	G	A	A	Sox3.mouse_HMG_1	13	1	+	4.255430652939854	-1.8526751370860632	AAAGAATGCTGTTGTTG
chr10	14011244	14011245	chr10:14011245:T:C	rs10906565	T	C	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr10	14011253	14011254	chr10:14011254:G:T	rs10906566	G	T	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr10	14017708	14017709	chr10:14017709:C:T	rs11258798	C	T	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr10	14356225	14356226	chr10:14356226:C:T	rs7083480	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr10	14382904	14382905	chr10:14382905:G:A	rs35190274	G	A	g	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr10	14413386	14413387	chr10:14413387:A:T	rs11259072	A	T	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr10	14539353	14539354	chr10:14539354:C:T	rs7083733	C	T	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr10	14539365	14539366	chr10:14539366:C:G	rs7083741	C	G	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr10	14684505	14684506	chr10:14684506:G:A	rs114562619	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr10	14698813	14698814	chr10:14698814:T:G	rs11259283	T	G	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr10	14702127	14702128	chr10:14702128:A:G	rs1023104480	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr10	14859929	14859930	chr10:14859930:C:G	rs9787671	C	G	C	Sox3.mouse_HMG_1	13	1	-	2.6673159004123455	-3.44078988961357	AGACAATGCAACTGTGT
chr10	14995671	14995672	chr10:14995672:G:T	rs4333919	G	T	-	Sox3.mouse_HMG_1	9	1	-	6.930017752198612	5.476373365369511	AAACAATATCATTGGGG
chr10	15123885	15123886	chr10:15123886:T:A	rs905380584	T	A	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr10	15201008	15201009	chr10:15201009:A:C	rs3935155	A	C	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr10	15324806	15324807	chr10:15324807:T:A	rs374976522	T	A	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr10	16283878	16283879	chr10:16283879:T:G	rs3802557	T	G	T	Sox3.mouse_HMG_1	6	1	+	6.04898962677021	-0.8594654073262007	CAACATTTGCAGTGTTG
chr10	16393085	16393086	chr10:16393086:C:T	rs1342333	C	T	T	Sox3.mouse_HMG_1	11	1	-	3.3733350536088453	-0.3611423734369017	AAAAAATACAAGTGTAA
chr10	16466043	16466044	chr10:16466044:G:A	rs6602118	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr10	16466052	16466053	chr10:16466053:A:G	rs6602119	A	G	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr10	16466179	16466180	chr10:16466180:C:G	rs6602120	C	G	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr10	16952047	16952048	chr10:16952048:C:A	rs2271469	C	A	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr10	16952065	16952066	chr10:16952066:G:A	rs375086255	G	A	G	Sox3.mouse_HMG_1	13	1	+	5.118016176800394	-0.9900896132255229	AAAAAAAGAAATTGTTT
chr10	16962559	16962560	chr10:16962560:G:T	rs1687714	G	T	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr10	16999759	16999760	chr10:16999760:T:C	rs7921270	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr10	17001817	17001818	chr10:17001818:T:G	rs3847368	T	G	T	Sox3.mouse_HMG_1	8	1	-	3.0202359443815063	1.8876754810024294	AAATAATGAAATTGAAG
chr10	17138675	17138676	chr10:17138676:A:C	rs7096079	A	C	C	Sox3.mouse_HMG_1	14	1	-	3.134148659832306	-3.2925005919496915	CAGCAATTTAAATGTTA
chr10	17242108	17242109	chr10:17242109:T:C	rs12253188	T	C	C	Sox3.mouse_HMG_1	1	1	-	7.580589706351237	3.253156362948548	AAACAATAAAATTCTGT
chr10	17322962	17322963	chr10:17322963:A:G	rs10466289	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr10	17435507	17435508	chr10:17435508:A:G	rs4748376	A	G	g	Sox3.mouse_HMG_1	10	1	+	2.5558572280537106	-4.352387930917627	ACATAATAACATTGTGG
chr10	17586161	17586162	chr10:17586162:T:C	rs12771283	T	C	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr10	17673462	17673463	chr10:17673463:C:T	rs116343068	C	T	C	Sox3.mouse_HMG_1	1	1	+	6.007906193170904	6.755422163157815	TCGCAATGACAGTGTTT
chr10	17850930	17850931	chr10:17850931:G:A	rs926394397	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr10	17857752	17857753	chr10:17857753:C:T	rs797030340	C	T	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr10	17860146	17860147	chr10:17860147:A:G	rs2028634	A	G	G	Sox3.mouse_HMG_1	6	1	-	1.5081440733240212	-5.137946696304902	CACAAATTAAATTGTTG
chr10	17981278	17981279	chr10:17981279:G:A	rs11011850	G	A	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr10	18060297	18060298	chr10:18060298:T:G	rs80269453	T	G	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr10	18773706	18773707	chr10:18773707:C:G	rs61839453	C	G	C	Sox3.mouse_HMG_1	13	1	-	6.045168392305831	-0.062937397720085	AAACAATTACCCTGTTT
chr10	19425789	19425790	chr10:19425790:G:A	rs61851070	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr10	19774119	19774120	chr10:19774120:A:C	rs58072866	A	C	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr10	19826593	19826594	chr10:19826594:G:C	rs117484187	G	C	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr10	19930068	19930069	chr10:19930069:C:T	rs12763380	C	T	C	Sox3.mouse_HMG_1	2	1	-	2.3996319767430028	6.807566955723461	GAGCAATGAAATTCTAG
chr10	19947158	19947159	chr10:19947159:G:A	rs1575867	G	A	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr10	19961180	19961181	chr10:19961181:C:A	rs7082368	C	A	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr10	20002089	20002090	chr10:20002090:A:C	rs957210	A	C	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr10	20094853	20094854	chr10:20094854:G:T	rs7098330	G	T	T	Sox3.mouse_HMG_1	3	1	-	6.290817996925963	-0.43389546593773703	ATACAATAAAATTCTTG
chr10	20142602	20142603	chr10:20142603:A:G	rs2461921	A	G	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr10	20186280	20186281	chr10:20186281:G:A	rs2358871	G	A	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr10	20193300	20193301	chr10:20193301:G:C	rs11011853	G	C	G	Sox3.mouse_HMG_1	13	1	+	3.3880736478444957	-2.72003214218142	TAACAAATGTATTGATT
chr10	20330822	20330823	chr10:20330823:G:A	rs534989503	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr10	20429056	20429057	chr10:20429057:A:T	rs56394272	A	T	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr10	20524005	20524006	chr10:20524006:C:G	rs7912427	C	G	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr10	20659480	20659481	chr10:20659481:A:G	chr10:20659481:A:G	A	G	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr10	20736243	20736244	chr10:20736244:T:A	rs4142115	T	A	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr10	21070062	21070063	chr10:21070063:G:A	rs752376721	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr10	21070096	21070097	chr10:21070097:A:G	rs11012502	A	G	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr10	21191694	21191695	chr10:21191695:G:T	rs149871299	G	T	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr10	21281966	21281967	chr10:21281967:C:T	rs12252629	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr10	21513811	21513812	chr10:21513812:A:G	rs7100471	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.114130330230638	-3.531960439398282	GAAAAATAACAGTTTTT
chr10	21538866	21538867	chr10:21538867:G:A	rs1802669	G	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr10	22347140	22347141	chr10:22347141:T:C	rs80180421	T	C	.	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr10	22558649	22558650	chr10:22558650:G:C	rs16922454	G	C	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr10	22722941	22722942	chr10:22722942:G:A	rs34032638	G	A	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr10	23369384	23369385	chr10:23369385:T:C	rs76036995	T	C	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr10	23445808	23445809	chr10:23445809:A:G	rs7920535	A	G	G	Sox3.mouse_HMG_1	1	1	+	1.781992216569578	-2.545441126833114	GATCAATGACAATGATT
chr10	23978407	23978408	chr10:23978408:A:C	rs11013821	A	C	A	Sox3.mouse_HMG_1	9	1	+	1.4138546881514293	2.8674990749805302	AAACAAGGAAAATGTGT
chr10	24352258	24352259	chr10:24352259:A:C	rs77127033	A	C	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	24494463	24494464	chr10:24494464:C:A	rs3818672	C	A	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr10	24575197	24575198	chr10:24575198:A:T	rs2367059	A	T	T	Sox3.mouse_HMG_1	11	1	-	2.088149719642522	-3.774306374264105	CAGCATTTTAATTGTTA
chr10	24774034	24774035	chr10:24774035:C:G	rs73606562	C	G	c	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr10	25811477	25811478	chr10:25811478:G:A	rs74125943	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr10	25867401	25867402	chr10:25867402:A:G	rs17738073	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr10	25867510	25867511	chr10:25867511:A:G	rs2367986	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.119888883755296	-3.6062445935471574	AAACAATTATATAGGAT
chr10	26372582	26372583	chr10:26372583:A:G	rs2105059	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr10	26454994	26454995	chr10:26454995:T:C	rs4747563	T	C	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr10	26492458	26492459	chr10:26492459:G:A	rs1775246	G	A	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr10	26888315	26888316	chr10:26888316:A:G	rs10829131	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr10	27440815	27440816	chr10:27440816:A:G	rs11015783	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr10	27455124	27455125	chr10:27455125:G:A	rs79824113	G	A	G	Sox3.mouse_HMG_1	7	1	+	0.8444047388308064	0.3483344190534964	AAACAATGACCTTTGTT
chr10	27505059	27505060	chr10:27505060:C:T	rs191392441	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr10	27543203	27543204	chr10:27543204:G:A	rs10829270	G	A	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr10	27620362	27620363	chr10:27620363:A:T	rs2642305	A	T	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr10	27697021	27697022	chr10:27697022:T:C	rs11015953	T	C	T	Sox3.mouse_HMG_1	2	1	-	3.267390947388817	-1.140544031591645	ATACAATTTAAGTCTTT
chr10	27701192	27701193	chr10:27701193:G:A	rs2492917	G	A	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr10	27862005	27862006	chr10:27862006:A:C	rs11006747	A	C	C	Sox3.mouse_HMG_1	8	1	+	5.109099172309848	3.976538708930772	AAACAATGAAATGATTG
chr10	28172269	28172270	chr10:28172270:T:C	rs7092972	T	C	t	Sox3.mouse_HMG_1	11	1	+	10.359141836272817	4.301685727312464	AAACAAATACATTGTTA
chr10	28245012	28245013	chr10:28245013:T:C	rs7896797	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr10	28344679	28344680	chr10:28344680:G:A	rs1840876	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr10	28344683	28344684	chr10:28344684:T:C	rs1840875	T	C	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr10	28394389	28394390	chr10:28394390:G:T	rs181732839	G	T	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr10	28432216	28432217	chr10:28432217:C:T	rs79988428	C	T	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr10	28432217	28432218	chr10:28432218:G:A	rs117486122	G	A	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr10	28472658	28472659	chr10:28472659:C:T	rs7896189	C	T	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr10	28623482	28623483	chr10:28623483:A:G	rs72809652	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr10	28659972	28659973	chr10:28659973:T:C	rs678642	T	C	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr10	28679376	28679377	chr10:28679377:A:G	rs675558	A	G	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr10	28743972	28743973	chr10:28743973:G:A	rs12570719	G	A	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr10	28761798	28761799	chr10:28761799:A:G	rs1272603	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr10	28839957	28839958	chr10:28839958:T:C	rs72813806	T	C	T	Sox3.mouse_HMG_1	5	1	-	3.944169055039005	-2.781964422263451	TACCAATAAAAATGTTT
chr10	28872833	28872834	chr10:28872834:A:C	rs1627445	A	C	c	Sox3.mouse_HMG_1	10	1	+	4.424209902370573	-2.1404455522106884	AAAAAATGTCAGTATTT
chr10	28974968	28974969	chr10:28974969:G:C	rs11594011	G	C	G	Sox3.mouse_HMG_1	13	1	+	1.4173972905720236	-4.690708499453892	TGGCAATGGGATTGTTG
chr10	28995039	28995040	chr10:28995040:A:G	rs76921075	A	G	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr10	28997609	28997610	chr10:28997610:A:T	rs11007347	A	T	A	Sox3.mouse_HMG_1	4	1	+	1.3962911291543527	-4.918017297349474	AAACAAAGGCATAGATT
chr10	29563362	29563363	chr10:29563363:C:T	rs1974082	C	T	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr10	29784468	29784469	chr10:29784469:C:G	rs537649509	C	G	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr10	29875181	29875182	chr10:29875182:G:A	rs150693919	G	A	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr10	30017949	30017950	chr10:30017950:T:G	rs12762440	T	G	G	Sox3.mouse_HMG_1	14	1	+	1.510079571366026	-4.9165696804159715	AAAGAAAATTAGTGTTA
chr10	30155953	30155954	chr10:30155954:G:C	rs73246614	G	C	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr10	30380948	30380949	chr10:30380949:G:C	rs11595829	G	C	.	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr10	30383264	30383265	chr10:30383265:T:A	rs2480284	T	A	.	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr10	30437982	30437983	chr10:30437983:C:T	rs8176964	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr10	30500861	30500862	chr10:30500862:C:A	rs3124198	C	A	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr10	30504214	30504215	chr10:30504215:T:C	rs3124196	T	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr10	30597867	30597868	chr10:30597868:C:T	rs56322659	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr10	30833371	30833372	chr10:30833372:A:G	rs35285166	A	G	A	Sox3.mouse_HMG_1	1	1	+	2.0001130156825053	-2.3273203277201864	AAACCATGTTACTGTGT
chr10	30869661	30869662	chr10:30869662:A:G	rs10763843	A	G	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr10	30999079	30999080	chr10:30999080:C:G	rs546989348	C	G	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr10	31137168	31137169	chr10:31137169:C:T	rs899993054	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr10	31137169	31137170	chr10:31137170:G:A	rs59723319	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr10	31774457	31774458	chr10:31774458:C:T	rs1042182892	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr10	31774461	31774462	chr10:31774462:T:C	rs7901745	T	C	t	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr10	31878746	31878747	chr10:31878747:T:C	rs2799025	T	C	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr10	32240780	32240781	chr10:32240781:C:T	rs2806129	C	T	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr10	32445480	32445481	chr10:32445481:T:C	rs10827058	T	C	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr10	32445515	32445516	chr10:32445516:C:G	rs76926087	C	G	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr10	32681408	32681409	chr10:32681409:C:T	rs112743644	C	T	C	Sox3.mouse_HMG_1	11	1	-	4.189957983778679	0.45548055673293136	AAACAATGACTGTATTG
chr10	32727663	32727664	chr10:32727664:A:G	rs2992673	A	G	G	Sox3.mouse_HMG_1	10	1	+	4.735833219599935	-2.172411939371404	AAGCAATTGCAGTTTTT
chr10	32932974	32932975	chr10:32932975:C:G	rs71493154	C	G	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr10	32980468	32980469	chr10:32980469:A:C	rs60724454	A	C	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr10	33113364	33113365	chr10:33113365:A:G	rs2666252	A	G	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr10	33152135	33152136	chr10:33152136:G:A	rs17488992	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr10	33152168	33152169	chr10:33152169:A:C	rs16934111	A	C	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr10	33180357	33180358	chr10:33180358:C:T	rs2229936	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr10	33235399	33235400	chr10:33235400:G:A	rs112982326	G	A	G	Sox3.mouse_HMG_1	3	1	-	1.6460000029009416	-4.336776115233379	GAGCAATGGTAGTGACT
chr10	33509817	33509818	chr10:33509818:A:C	rs2605506	A	C	A	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr10	33509820	33509821	chr10:33509821:T:G	chr10:33509821:T:G	T	G	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr10	33871312	33871313	chr10:33871313:C:T	rs16934885	C	T	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr10	34003793	34003794	chr10:34003794:T:G	rs224703	T	G	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr10	34045969	34045970	chr10:34045970:C:T	rs10508795	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr10	34090964	34090965	chr10:34090965:C:T	rs17535788	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr10	34143542	34143543	chr10:34143543:C:T	rs2645230	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr10	34238458	34238459	chr10:34238459:C:A	rs1111267	C	A	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr10	34407489	34407490	chr10:34407490:T:C	rs11009774	T	C	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr10	34767196	34767197	chr10:34767197:T:A	rs61840961	T	A	A	Sox3.mouse_HMG_1	0	1	-	0.862746912401405	-1.1604074129148403	AAACAAGCACTTTGTTT
chr10	34830196	34830197	chr10:34830197:G:A	rs4934675	G	A	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr10	34968031	34968032	chr10:34968032:G:C	rs4934685	G	C	.	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr10	34968957	34968958	chr10:34968958:G:A	rs4007288	G	A	.	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	35253828	35253829	chr10:35253829:T:C	rs12249814	T	C	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr10	35267609	35267610	chr10:35267610:T:C	rs142460001	T	C	T	Sox3.mouse_HMG_1	11	1	+	1.9790142039007816	-4.078441905059571	TGACAATGATATAGATG
chr10	35424958	35424959	chr10:35424959:A:G	rs3013360	A	G	A	Sox3.mouse_HMG_1	6	1	-	0.5734181325900604	-6.072672637038861	AAACCATGATTCTGTTT
chr10	35453918	35453919	chr10:35453919:T:G	rs1024597256	T	G	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr10	35616004	35616005	chr10:35616005:A:G	rs676531	A	G	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr10	35795559	35795560	chr10:35795560:G:C	rs56817381	G	C	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr10	35847935	35847936	chr10:35847936:T:C	rs2209687	T	C	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr10	35903178	35903179	chr10:35903179:C:T	rs2767069	C	T	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr10	36172064	36172065	chr10:36172065:A:T	rs12356713	A	T	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr10	36441450	36441451	chr10:36441451:C:A	rs74134822	C	A	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr10	36555270	36555271	chr10:36555271:G:A	rs74136805	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr10	36555318	36555319	chr10:36555319:G:A	rs193120047	G	A	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr10	36726378	36726379	chr10:36726379:T:A	rs11010801	T	A	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr10	36881118	36881119	chr10:36881119:G:A	rs150610605	G	A	g	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr10	37057266	37057267	chr10:37057267:A:T	rs1711254	A	T	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr10	37057267	37057268	chr10:37057268:G:T	rs1711255	G	T	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr10	37977783	37977784	chr10:37977784:A:C	rs11011416	A	C	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr10	39146088	39146089	chr10:39146089:A:G	rs1191946658	A	G	.	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr10	41524624	41524625	chr10:41524625:A:T	rs1306854829	A	T	.	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr10	41584270	41584271	chr10:41584271:G:C	rs1196524627	G	C	.	Sox3.mouse_HMG_1	9	1	-	4.254902108041866	-1.7817418985085673	TTACAAAGACAGTGTTT
chr10	41859978	41859979	chr10:41859979:T:C	rs200129664	T	C	.	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr10	42944580	42944581	chr10:42944581:C:T	rs3123719	C	T	C	Sox3.mouse_HMG_1	0	1	+	6.014767057951497	5.581204244987451	CAAAAATTATATTGTCT
chr10	43140455	43140456	chr10:43140456:C:T	rs114846259	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr10	43140732	43140733	chr10:43140733:G:A	rs9804209	G	A	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr10	43140733	43140734	chr10:43140734:C:T	rs78222320	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr10	43285533	43285534	chr10:43285534:C:T	rs11238502	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr10	43793805	43793806	chr10:43793806:G:T	rs1028519083	G	T	.	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr10	43793853	43793854	chr10:43793854:A:G	rs10899910	A	G	.	Sox3.mouse_HMG_1	12	1	-	0.4478557497626606	-5.758609835455191	AAACAAAGCCAGTGACT
chr10	43793857	43793858	chr10:43793858:G:A	rs57113623	G	A	.	Sox3.mouse_HMG_1	8	1	-	0.4478557497626606	0.7605949746732038	AAACAAAGCCAGTGACT
chr10	43793870	43793871	chr10:43793871:G:A	rs79963519	G	A	.	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr10	44021155	44021156	chr10:44021156:C:T	rs10899971	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr10	44021161	44021162	chr10:44021162:C:T	rs7903881	C	T	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr10	44044008	44044009	chr10:44044009:T:C	rs7923238	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr10	44044047	44044048	chr10:44044048:G:T	chr10:44044048:G:T	G	T	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr10	44044048	44044049	chr10:44044049:A:C	chr10:44044049:A:C	A	C	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr10	44180843	44180844	chr10:44180844:G:A	rs74138238	G	A	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr10	44186280	44186281	chr10:44186281:A:G	rs61855743	A	G	A	Sox3.mouse_HMG_1	6	1	-	0.39442886315779807	-6.251661906471122	AGGCAATGCTTGTGTTG
chr10	44321761	44321762	chr10:44321762:A:C	rs2505738	A	C	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr10	44403513	44403514	chr10:44403514:C:T	rs1779379	C	T	C	Sox3.mouse_HMG_1	11	1	+	1.2679810197737953	7.325437128734146	GAGCAATGACACTGTAC
chr10	44506921	44506922	chr10:44506922:A:G	rs11598086	A	G	a	Sox3.mouse_HMG_1	6	1	-	0.993739251522174	-5.652351518106746	AATCAATGGCAGAGTGT
chr10	44512650	44512651	chr10:44512651:G:A	rs1434557291	G	A	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr10	44674134	44674135	chr10:44674135:A:G	rs76639976	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr10	45261270	45261271	chr10:45261271:C:A	rs7909803	C	A	C	Sox3.mouse_HMG_1	7	1	-	1.4876955003492924	-0.049853604392863016	ATACAATGACCATGTTA
chr10	45373000	45373001	chr10:45373001:G:T	rs6593482	G	T	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr10	45426533	45426534	chr10:45426534:A:G	rs3780906	A	G	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr10	45473538	45473539	chr10:45473539:G:C	rs7087633	G	C	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr10	46219242	46219243	chr10:46219243:T:G	rs61843562	T	G	t	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr10	46257669	46257670	chr10:46257670:C:T	rs191073147	C	T	.	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	46574085	46574086	chr10:46574086:G:A	rs533441017	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr10	46596194	46596195	chr10:46596195:G:A	rs28470456	G	A	G	Sox3.mouse_HMG_1	12	1	-	0.5646106409506768	6.771076226168528	CAACAATGGCATCGAGG
chr10	47223806	47223807	chr10:47223807:T:C	rs12572948	T	C	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr10	47241893	47241894	chr10:47241894:T:G	rs9325891	T	G	G	Sox3.mouse_HMG_1	1	1	-	1.5107637869323383	-4.1270911093287745	CAACAATGGAGGAGTTT
chr10	47267170	47267171	chr10:47267171:T:C	rs4922496	T	C	T	Sox3.mouse_HMG_1	10	1	-	0.7559575870202986	-6.15228757195104	GGACCATGACACTGTTG
chr10	47373307	47373308	chr10:47373308:G:A	rs10736370	G	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr10	47484431	47484432	chr10:47484432:C:T	rs1461966894	C	T	c	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr10	48196969	48196970	chr10:48196970:T:C	rs56036047	T	C	T	Sox3.mouse_HMG_1	15	1	+	1.22604553691756	-3.0764562608779236	AAGCAATATCAATGGTG
chr10	48477399	48477400	chr10:48477400:T:C	rs78395468	T	C	C	Sox3.mouse_HMG_1	16	1	-	2.2796738734109807	2.713505318132088	CAACAATACAATGGATA
chr10	48507064	48507065	chr10:48507065:A:C	rs11101349	A	C	C	Sox3.mouse_HMG_1	16	1	-	4.734616507167584	3.768764866410472	GAACAAGGTCATTTTTT
chr10	48710541	48710542	chr10:48710542:A:G	rs7912944	A	G	A	Sox3.mouse_HMG_1	8	1	-	4.60123508080178	4.288495855891238	GAACAATGTAATATTTT
chr10	48748489	48748490	chr10:48748490:T:C	rs67702314	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr10	49088935	49088936	chr10:49088936:C:T	rs12762834	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr10	49116324	49116325	chr10:49116325:G:T	rs60458886	G	T	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr10	49136443	49136444	chr10:49136444:A:C	rs11594275	A	C	A	Sox3.mouse_HMG_1	4	1	+	7.015350254951411	0.2900365399638045	AAACAATATTAGTCTTC
chr10	49136456	49136457	chr10:49136457:G:A	rs7073645	G	A	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr10	49242684	49242685	chr10:49242685:G:A	rs11101057	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr10	49242694	49242695	chr10:49242695:G:A	rs7903863	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr10	50058186	50058187	chr10:50058187:T:C	rs115554683	T	C	.	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr10	50326117	50326118	chr10:50326118:C:A	rs12254110	C	A	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr10	50398512	50398513	chr10:50398513:C:T	rs866791075	C	T	C	Sox3.mouse_HMG_1	8	1	+	6.5509684855276396	6.863707710438182	TAACAATACCGGTGTTG
chr10	50974680	50974681	chr10:50974681:G:A	rs10995206	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr10	51043832	51043833	chr10:51043833:G:A	rs11814118	G	A	G	Sox3.mouse_HMG_1	14	1	+	4.927489368601806	6.068661271688712	AGACAATGGCATTGGAT
chr10	52055179	52055180	chr10:52055180:C:T	rs4457701	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr10	52100727	52100728	chr10:52100728:T:C	rs4935029	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr10	52169627	52169628	chr10:52169628:G:A	rs61847297	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr10	52279798	52279799	chr10:52279799:G:A	rs7083967	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr10	52452063	52452064	chr10:52452064:G:A	chr10:52452064:G:A	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr10	52478965	52478966	chr10:52478966:T:C	rs150071220	T	C	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr10	52488989	52488990	chr10:52488990:C:T	rs1730479	C	T	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr10	52755615	52755616	chr10:52755616:T:A	rs60778323	T	A	T	Sox3.mouse_HMG_1	2	1	-	0.8130724699939593	-5.089014265962807	AGACAAAGCCACTGTTG
chr10	52755635	52755636	chr10:52755636:C:T	rs79852255	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr10	52875945	52875946	chr10:52875946:A:G	rs10824825	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr10	53724889	53724890	chr10:53724890:A:G	rs7067556	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr10	53724918	53724919	chr10:53724919:T:C	rs2384303	T	C	T	Sox3.mouse_HMG_1	11	1	+	4.349320818305422	-1.7081352906549319	AAACATTGCTTTTGTTG
chr10	53832023	53832024	chr10:53832024:A:T	rs7074365	A	T	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr10	54112238	54112239	chr10:54112239:C:T	rs10825239	C	T	T	Sox3.mouse_HMG_1	3	1	+	4.421368599399396	-1.5614075187349263	TACCAATGACATTTTTG
chr10	54210960	54210961	chr10:54210961:C:T	rs6481068	C	T	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr10	54304187	54304188	chr10:54304188:C:T	rs7919725	C	T	T	Sox3.mouse_HMG_1	12	1	-	6.208493972498297	7.18842996953281	AAACAATGATATGGGTG
chr10	54716346	54716347	chr10:54716347:A:C	rs67442181	A	C	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr10	55242188	55242189	chr10:55242189:T:C	rs58448997	T	C	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr10	56176094	56176095	chr10:56176095:C:T	rs2393006	C	T	T	Sox3.mouse_HMG_1	13	1	-	2.8041788995016947	-3.303926890524221	AAACAATAATAATGCAA
chr10	56633823	56633824	chr10:56633824:C:T	rs56351613	C	T	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr10	57018374	57018375	chr10:57018375:C:T	rs10825965	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr10	57323975	57323976	chr10:57323976:C:T	rs1904766	C	T	C	Sox3.mouse_HMG_1	8	1	-	5.089914390879999	6.116327865890634	CAATAATAGAATTGTGT
chr10	57689992	57689993	chr10:57689993:T:C	rs78683715	T	C	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr10	57925306	57925307	chr10:57925307:C:T	rs7086874	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr10	57979483	57979484	chr10:57979484:A:G	rs2658630	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr10	58209349	58209350	chr10:58209350:G:C	rs12261547	G	C	G	Sox3.mouse_HMG_1	9	1	-	2.365458916987893	-3.671185089562539	ACACAATTGCAGTGCTA
chr10	58282079	58282080	chr10:58282080:G:A	rs2790185	G	A	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr10	58475720	58475721	chr10:58475721:C:T	rs117008571	C	T	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	58546155	58546156	chr10:58546156:G:C	rs1649066	G	C	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr10	58609716	58609717	chr10:58609717:C:T	rs12244874	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr10	58662413	58662414	chr10:58662414:A:T	rs541955605	A	T	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr10	58721883	58721884	chr10:58721884:A:C	chr10:58721884:A:C	A	C	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr10	58721893	58721894	chr10:58721894:A:G	rs148419764	A	G	A	Sox3.mouse_HMG_1	9	1	-	0.9045601741068177	0.9402662989913855	AAACAATCATATGGCTG
chr10	59366215	59366216	chr10:59366216:C:T	rs17184032	C	T	C	Sox3.mouse_HMG_1	16	1	+	3.4737802995616165	7.075576965182599	GAACAATGCCACTGTGC
chr10	59536858	59536859	chr10:59536859:C:G	rs1763886	C	G	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr10	59536880	59536881	chr10:59536881:T:C	rs115731924	T	C	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr10	59585591	59585592	chr10:59585592:A:G	rs10458677	A	G	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr10	59594118	59594119	chr10:59594119:A:G	rs4948233	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr10	59632211	59632212	chr10:59632212:G:A	rs7100513	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr10	59751269	59751270	chr10:59751270:G:T	rs117544478	G	T	G	Sox3.mouse_HMG_1	0	1	+	1.4122221536244322	0.7618844937697268	GAACAAAGTAAGTGCTT
chr10	59814224	59814225	chr10:59814225:T:C	rs10761417	T	C	C	Sox3.mouse_HMG_1	11	1	+	10.303963716990209	4.246507608029854	AAACAATTTTATTATTA
chr10	59945998	59945999	chr10:59945999:C:G	rs73269307	C	G	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr10	60042409	60042410	chr10:60042410:C:T	rs2393601	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr10	60042967	60042968	chr10:60042968:A:C	rs9888034	A	C	A	Sox3.mouse_HMG_1	12	1	-	1.963329458463328	-4.604798612204295	GTACAATTATGTTGTAT
chr10	60197240	60197241	chr10:60197241:T:C	rs6479698	T	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr10	60238197	60238198	chr10:60238198:A:G	rs10821707	A	G	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr10	60368052	60368053	chr10:60368053:C:T	rs79359809	C	T	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	60368064	60368065	chr10:60368065:A:G	rs79663415	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr10	60390173	60390174	chr10:60390174:A:C	rs186264412	A	C	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr10	60573906	60573907	chr10:60573907:C:T	rs151007800	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr10	60806974	60806975	chr10:60806975:G:C	rs7922650	G	C	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr10	60874862	60874863	chr10:60874863:C:T	rs2279942	C	T	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr10	60908085	60908086	chr10:60908086:G:C	rs10994574	G	C	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr10	61024291	61024292	chr10:61024292:G:A	rs4245590	G	A	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr10	61163504	61163505	chr10:61163505:C:T	rs11818852	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr10	61163544	61163545	chr10:61163545:T:C	rs116123721	T	C	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr10	61488036	61488037	chr10:61488037:A:T	rs2249816	A	T	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr10	61548310	61548311	chr10:61548311:C:G	rs2650717	C	G	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr10	61548635	61548636	chr10:61548636:A:G	rs2254084	A	G	G	Sox3.mouse_HMG_1	12	1	-	8.926040370376166	2.719574785158315	AAAAAATGGCAGTGTTA
chr10	61609673	61609674	chr10:61609674:G:A	rs73285827	G	A	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr10	61623639	61623640	chr10:61623640:G:A	rs1456291	G	A	G	Sox3.mouse_HMG_1	7	1	+	2.611659513202056	2.115589193424745	TAGCAATGGAAGAGTTG
chr10	61623640	61623641	chr10:61623641:G:T	rs1456290	G	T	G	Sox3.mouse_HMG_1	8	1	+	2.611659513202056	2.818251749744159	TAGCAATGGAAGAGTTG
chr10	61793185	61793186	chr10:61793186:C:T	rs1002843976	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr10	61815582	61815583	chr10:61815583:C:T	rs10509161	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr10	61940468	61940469	chr10:61940469:A:T	rs4360655	A	T	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr10	61940485	61940486	chr10:61940486:A:G	rs4562771	A	G	G	Sox3.mouse_HMG_1	12	1	-	3.391189744707443	-2.8152758405104086	TATAAATGATAGTGTTT
chr10	61993722	61993723	chr10:61993723:A:G	rs9415635	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr10	61993736	61993737	chr10:61993737:G:A	rs80092100	G	A	G	Sox3.mouse_HMG_1	3	1	-	2.5328135509992653	-3.449962567135056	TGACAATTATATTGAAG
chr10	61993752	61993753	chr10:61993753:A:T	rs370520548	A	T	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr10	62073420	62073421	chr10:62073421:T:C	rs149085090	T	C	T	Sox3.mouse_HMG_1	6	1	+	3.5185678780499536	-3.1275228915789666	CAATAATGAAAGTGTGG
chr10	62115615	62115616	chr10:62115616:T:G	rs3862866	T	G	T	Sox3.mouse_HMG_1	9	1	-	3.2888224981863567	4.742466885015457	CAACAATTAAATTTTGA
chr10	62196635	62196636	chr10:62196636:A:G	rs34457392	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr10	62214469	62214470	chr10:62214470:T:G	rs10995090	T	G	T	Sox3.mouse_HMG_1	0	1	-	1.6536686650490549	0.0640771526968551	AATCAGTGGCATTGTAA
chr10	62225090	62225091	chr10:62225091:C:T	rs12360043	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr10	62391034	62391035	chr10:62391035:C:T	rs4543879	C	T	c	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr10	62424763	62424764	chr10:62424764:C:A	rs3999111	C	A	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr10	62610700	62610701	chr10:62610701:C:G	rs116835850	C	G	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr10	62631614	62631615	chr10:62631615:G:A	rs10995245	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr10	63009867	63009868	chr10:63009868:G:A	rs2842284	G	A	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr10	63287265	63287266	chr10:63287266:C:T	rs10995493	C	T	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	63757248	63757249	chr10:63757249:G:A	rs10822204	G	A	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr10	63812740	63812741	chr10:63812741:T:C	rs2619405	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr10	63874270	63874271	chr10:63874271:T:C	rs12774150	T	C	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr10	63931892	63931893	chr10:63931893:C:T	rs2248496	C	T	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr10	64631143	64631144	chr10:64631144:T:G	rs61857759	T	G	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr10	64973519	64973520	chr10:64973520:A:C	rs7898212	A	C	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr10	65070485	65070486	chr10:65070486:C:T	rs4431909	C	T	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr10	65159540	65159541	chr10:65159541:A:T	rs10996247	A	T	A	Sox3.mouse_HMG_1	10	1	+	6.1825263499417815	-0.6304086292252322	GATCAATAACATTGATG
chr10	65159590	65159591	chr10:65159591:T:C	rs12416189	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr10	65231535	65231536	chr10:65231536:T:C	rs7912474	T	C	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr10	65660088	65660089	chr10:65660089:C:T	rs74602890	C	T	C	Sox3.mouse_HMG_1	0	1	-	1.6706282698673172	3.0434449353288557	GAACAATAACAGTTTGC
chr10	65660095	65660096	chr10:65660096:G:A	rs141011963	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr10	65910988	65910989	chr10:65910989:C:T	rs10996775	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr10	66626326	66626327	chr10:66626327:G:A	rs79105848	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr10	66656939	66656940	chr10:66656940:A:G	rs1007739	A	G	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr10	67043633	67043634	chr10:67043634:T:A	rs547158879	T	A	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr10	67087348	67087349	chr10:67087349:A:G	rs4746657	A	G	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr10	67249738	67249739	chr10:67249739:A:G	rs10997596	A	G	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr10	67966329	67966330	chr10:67966330:A:C	rs10509292	A	C	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr10	68096814	68096815	chr10:68096815:A:T	rs7092427	A	T	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr10	68111474	68111475	chr10:68111475:G:C	rs17456755	G	C	G	Sox3.mouse_HMG_1	12	1	+	1.9575478079067614	2.3192102933565324	GAAAAATGAAAGGGTTT
chr10	68156564	68156565	chr10:68156565:G:A	rs71475229	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr10	68193658	68193659	chr10:68193659:A:G	rs10998009	A	G	A	Sox3.mouse_HMG_1	12	1	+	1.6192793004660984	0.6393433034315873	AAACATTAGCATAGTGT
chr10	68331565	68331566	chr10:68331566:C:G	rs138330973	C	G	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr10	68523476	68523477	chr10:68523477:A:G	rs80341890	A	G	A	Sox3.mouse_HMG_1	6	1	-	1.8255186336352764	-4.820572135993644	AAAAAATGACATTTATT
chr10	68582641	68582642	chr10:68582642:T:C	rs10762232	T	C	C	Sox3.mouse_HMG_1	9	1	-	4.445380248002879	-0.13761937171845273	AAATAATACAAGTGTGT
chr10	68784068	68784069	chr10:68784069:T:G	rs776233911	T	G	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr10	69326215	69326216	chr10:69326216:A:C	rs77231906	A	C	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr10	69382735	69382736	chr10:69382736:C:T	rs140498607	C	T	C	Sox3.mouse_HMG_1	13	1	-	2.818005134889082	-3.290100655136834	TAACCACGGCATTGTTG
chr10	69492286	69492287	chr10:69492287:C:T	rs10998835	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr10	69614090	69614091	chr10:69614091:G:A	rs866475836	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr10	69887063	69887064	chr10:69887064:G:C	rs117354073	G	C	G	Sox3.mouse_HMG_1	13	1	+	0.5866370628490174	-5.521468727176899	GAGCAATGACTGTGTAA
chr10	69953008	69953009	chr10:69953009:T:C	rs74139248	T	C	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr10	69965757	69965758	chr10:69965758:A:G	rs7899029	A	G	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	69966643	69966644	chr10:69966644:T:C	rs11816910	T	C	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr10	70331471	70331472	chr10:70331472:C:T	rs547210291	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	70395861	70395862	chr10:70395862:A:G	rs115684359	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr10	70995770	70995771	chr10:70995771:A:C	rs10823658	A	C	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr10	71241603	71241604	chr10:71241604:C:T	rs10999743	C	T	t	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr10	71345266	71345267	chr10:71345267:A:G	rs6480514	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr10	71353751	71353752	chr10:71353752:C:T	rs138642253	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr10	71458205	71458206	chr10:71458206:T:C	rs4747156	T	C	C	Sox3.mouse_HMG_1	2	1	-	-0.0734227049015948	-4.481357683882057	AGACAAAGCTGTTGTTG
chr10	71520849	71520850	chr10:71520850:A:G	rs10999861	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr10	71648460	71648461	chr10:71648461:T:C	rs1900513	T	C	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr10	71667023	71667024	chr10:71667024:A:G	rs74357729	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr10	71685949	71685950	chr10:71685950:T:C	rs1227091	T	C	T	Sox3.mouse_HMG_1	15	1	+	4.87956138269939	0.5770595849039066	CAGCAATGAAGTTGTTG
chr10	71895932	71895933	chr10:71895933:G:A	rs7087344	G	A	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr10	71922109	71922110	chr10:71922110:T:C	rs77381493	T	C	T	Sox3.mouse_HMG_1	10	1	-	1.7832896405665242	-5.124955518404815	CAACAAAGACATTGGAT
chr10	71950879	71950880	chr10:71950880:G:A	rs4536131	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr10	71958134	71958135	chr10:71958135:A:G	rs12245721	A	G	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr10	71958156	71958157	chr10:71958157:C:T	rs11527412	C	T	T	Sox3.mouse_HMG_1	13	1	-	5.736677240992948	-0.3714285490329682	GAACAATGGCAACGTTT
chr10	72013240	72013241	chr10:72013241:G:A	rs4148953	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr10	72186855	72186856	chr10:72186856:C:A	chr10:72186856:C:A	C	A	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr10	72186855	72186856	chr10:72186856:C:T	rs7088358	C	T	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr10	72337567	72337568	chr10:72337568:G:A	rs55769980	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr10	72510032	72510033	chr10:72510033:T:C	rs7350413	T	C	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr10	72542890	72542891	chr10:72542891:C:G	rs7899516	C	G	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr10	73244925	73244926	chr10:73244926:G:T	rs79102091	G	T	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr10	73608163	73608164	chr10:73608164:A:G	rs58718675	A	G	G	Sox3.mouse_HMG_1	14	1	-	1.9756416116408442	-4.134249303607863	AAGCAATTCTTTTGTCT
chr10	73608173	73608174	chr10:73608174:T:C	rs12251722	T	C	C	Sox3.mouse_HMG_1	4	1	-	1.9756416116408442	-4.836683480336392	AAGCAATTCTTTTGTCT
chr10	74035491	74035492	chr10:74035492:C:T	rs1471757083	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr10	74088758	74088759	chr10:74088759:G:A	rs6480715	G	A	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr10	74208557	74208558	chr10:74208558:T:G	rs10762582	T	G	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr10	74477739	74477740	chr10:74477740:C:T	rs7100550	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr10	75230486	75230487	chr10:75230487:C:T	rs11001335	C	T	C	Sox3.mouse_HMG_1	15	1	+	6.29717327715797	10.599675074953455	GCACAATACCATTGTCG
chr10	75230492	75230493	chr10:75230493:T:C	rs556535157	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr10	75244037	75244038	chr10:75244038:C:T	rs142841096	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr10	75297310	75297311	chr10:75297311:C:T	rs7074161	C	T	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr10	75593675	75593676	chr10:75593676:C:T	rs9416086	C	T	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr10	75612940	75612941	chr10:75612941:A:G	rs4746313	A	G	A	Sox3.mouse_HMG_1	14	1	-	1.857910478524344	-4.251980436724363	AAGCAATAGCAAAGTTG
chr10	76193262	76193263	chr10:76193263:G:T	rs12249157	G	T	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr10	76281357	76281358	chr10:76281358:A:G	rs16933167	A	G	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr10	76288049	76288050	chr10:76288050:C:T	rs73289058	C	T	C	Sox3.mouse_HMG_1	2	1	-	1.771208708113899	6.179143687094359	AGGCCATTATATTGTTA
chr10	76681403	76681404	chr10:76681404:T:C	rs10824434	T	C	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr10	77090987	77090988	chr10:77090988:G:A	rs56057346	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr10	77267805	77267806	chr10:77267806:T:C	rs956513	T	C	C	Sox3.mouse_HMG_1	5	1	-	3.810321520506424	-2.9158119567960363	CAGCCATTCTATTGTTG
chr10	77363562	77363563	chr10:77363563:A:G	rs250710	A	G	A	Sox3.mouse_HMG_1	12	1	-	1.8608072551787314	-4.345658330039121	GCACCATGGAAGTGTTT
chr10	77635273	77635274	chr10:77635274:C:T	rs2720005	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr10	77785595	77785596	chr10:77785596:T:C	rs2812436	T	C	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr10	77785607	77785608	chr10:77785608:A:G	rs2579156	A	G	G	Sox3.mouse_HMG_1	10	1	+	3.365473930832926	-3.542771228138413	GAACTGTGGCATTGTTA
chr10	77836366	77836367	chr10:77836367:T:C	rs145732611	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr10	77836376	77836377	chr10:77836377:C:T	rs78575985	C	T	C	Sox3.mouse_HMG_1	3	1	+	2.231602840705199	-3.7511732774291255	TGACAAAGCAAGTGTTT
chr10	77870194	77870195	chr10:77870195:A:G	rs1248659	A	G	a	Sox3.mouse_HMG_1	4	1	+	2.79803578264685	-4.014289309330388	GGACAAATCCAGTGTTT
chr10	78043434	78043435	chr10:78043435:C:T	rs72642278	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr10	78195794	78195795	chr10:78195795:A:G	rs1149746	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr10	78718193	78718194	chr10:78718194:C:T	rs166164	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr10	78718224	78718225	chr10:78718225:A:T	rs74141365	A	T	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr10	78854357	78854358	chr10:78854358:A:G	rs2559807	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr10	79037287	79037288	chr10:79037288:C:T	rs113105314	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr10	79238552	79238553	chr10:79238553:T:C	chr10:79238553:T:C	T	C	T	Sox3.mouse_HMG_1	8	1	+	1.9242491685267522	1.6115099436162095	GAACTATTTCAGTATTT
chr10	79396997	79396998	chr10:79396998:G:A	rs6480936	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr10	79923520	79923521	chr10:79923521:C:T	rs34230583	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr10	79935451	79935452	chr10:79935452:A:G	rs1923537	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr10	79948256	79948257	chr10:79948257:C:T	rs723192	C	T	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr10	80320640	80320641	chr10:80320641:C:T	rs10749559	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr10	80597873	80597874	chr10:80597874:G:A	rs35743232	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr10	80613038	80613039	chr10:80613039:C:T	rs4934371	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr10	80737521	80737522	chr10:80737522:A:G	rs7916858	A	G	A	Sox3.mouse_HMG_1	2	1	+	2.542905025269499	-1.8650299537109625	TGACAATGATTTTGTAG
chr10	81747103	81747104	chr10:81747104:G:A	rs6584248	G	A	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr10	82206563	82206564	chr10:82206564:A:G	rs7908131	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.8918255565368043	-4.834307920765654	CCCCAATGCCAGTGTTA
chr10	82397626	82397627	chr10:82397627:T:C	rs148646217	T	C	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr10	82505412	82505413	chr10:82505413:G:A	rs581628	G	A	A	Sox3.mouse_HMG_1	13	1	+	1.1253199388950157	-4.9827858511309016	GAAGTATTTCAGTGTTT
chr10	83073666	83073667	chr10:83073667:G:C	rs4294518	G	C	G	Sox3.mouse_HMG_1	9	1	-	3.336182457996097	-2.700461548554334	AAACAATGGCAGCATTA
chr10	83214317	83214318	chr10:83214318:T:C	rs17215782	T	C	T	Sox3.mouse_HMG_1	9	1	+	4.8609928761306005	4.89669900101517	AAACAATTCTGGTGTTC
chr10	83538630	83538631	chr10:83538631:A:T	rs78185600	A	T	A	Sox3.mouse_HMG_1	14	1	-	0.536975131072488	-4.748502217622604	GAGCACTGACATTATTG
chr10	83538951	83538952	chr10:83538952:C:A	rs7092648	C	A	C	Sox3.mouse_HMG_1	8	1	-	1.6959777457831113	1.9025699823252133	AAACATATGCAGTGTTT
chr10	83605949	83605950	chr10:83605950:G:A	rs75460289	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr10	83609311	83609312	chr10:83609312:C:T	rs78838904	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	84015781	84015782	chr10:84015782:T:C	rs4145143	T	C	C	Sox3.mouse_HMG_1	5	1	-	3.842845207281992	-2.883288270020465	TGATAATAATATTGTAT
chr10	84148099	84148100	chr10:84148100:C:T	rs10887245	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr10	84178793	84178794	chr10:84178794:C:T	rs61429630	C	T	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr10	84224966	84224967	chr10:84224967:G:A	rs11200928	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr10	84309028	84309029	chr10:84309029:A:G	rs147610174	A	G	A	Sox3.mouse_HMG_1	10	1	+	0.4067331891807166	-6.50151196979062	CAACAATGACATGCTGG
chr10	84704830	84704831	chr10:84704831:T:C	rs945146	T	C	C	Sox3.mouse_HMG_1	14	1	+	3.2431542983593022	-2.8667366168894057	TATCAAGGACAGTGTTT
chr10	85194424	85194425	chr10:85194425:T:C	rs11201444	T	C	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr10	85528624	85528625	chr10:85528625:C:A	rs10887492	C	A	A	Sox3.mouse_HMG_1	16	1	-	1.464675725533783	2.4305273662908955	GAAGAATGCAGTTGTTG
chr10	86005020	86005021	chr10:86005021:A:C	rs10887544	A	C	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr10	86039738	86039739	chr10:86039739:C:G	rs17106202	C	G	G	Sox3.mouse_HMG_1	15	1	+	1.1294008136813563	0.8654837538708045	AAGCAATGCATTTGTCG
chr10	86234391	86234392	chr10:86234392:C:T	rs2814332	C	T	T	Sox3.mouse_HMG_1	6	1	+	6.105675564168048	12.751766333796967	AAACAACGGCATTGGTT
chr10	86416738	86416739	chr10:86416739:G:T	rs35872285	G	T	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr10	86613521	86613522	chr10:86613522:C:T	rs7895667	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr10	86636032	86636033	chr10:86636033:T:G	rs10788518	T	G	T	Sox3.mouse_HMG_1	4	1	-	4.890500782102862	-1.8348129328847442	AAACAAAAATGTTGTTG
chr10	86773673	86773674	chr10:86773674:G:T	rs77537633	G	T	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr10	86773684	86773685	chr10:86773685:A:G	rs117165809	A	G	A	Sox3.mouse_HMG_1	16	1	-	3.473548340647972	-0.12824832497300998	GTATAATTTCAGTGTTT
chr10	86773719	86773720	chr10:86773720:C:T	rs71473276	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr10	86937378	86937379	chr10:86937379:A:T	rs7078302	A	T	T	Sox3.mouse_HMG_1	6	1	-	3.7903867540100062	-3.118068280086402	AAAAAATGAAAGTATTT
chr10	86975201	86975202	chr10:86975202:A:G	rs115208079	A	G	A	Sox3.mouse_HMG_1	2	1	+	3.266682982639318	-1.141251996341143	CAAGAATGAAATAGTTA
chr10	87513821	87513822	chr10:87513822:G:A	rs2311115	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr10	87636616	87636617	chr10:87636617:A:G	rs963860477	A	G	A	Sox3.mouse_HMG_1	8	1	+	0.43468569445929445	-0.5917277805513415	GGGCAATGACAGGGTTG
chr10	87879229	87879230	chr10:87879230:C:T	rs75260973	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	87926751	87926752	chr10:87926752:G:T	rs17107001	G	T	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr10	88122621	88122622	chr10:88122622:C:A	rs12573738	C	A	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr10	88131043	88131044	chr10:88131044:G:C	rs10887784	G	C	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr10	88262889	88262890	chr10:88262890:C:T	rs286492	C	T	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr10	88333136	88333137	chr10:88333137:C:T	rs61855363	C	T	C	Sox3.mouse_HMG_1	6	1	+	3.911326281976156	10.557417051605077	CAACAACAAAATTCTTT
chr10	88456727	88456728	chr10:88456728:T:C	rs2312610	T	C	C	Sox3.mouse_HMG_1	8	1	-	1.9092624478705056	0.8828489728598704	AGACAATTACAAGGTTT
chr10	88477640	88477641	chr10:88477641:G:A	rs1325907	G	A	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr10	88491162	88491163	chr10:88491163:G:C	rs10887827	G	C	G	Sox3.mouse_HMG_1	5	1	-	3.3101324403519845	3.3971438173416137	TAGCACTAGCAGTGTTT
chr10	88729096	88729097	chr10:88729097:G:A	rs376045	G	A	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr10	88902328	88902329	chr10:88902329:T:C	rs1968028	T	C	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr10	89121519	89121520	chr10:89121520:C:T	rs4442451	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr10	89121527	89121528	chr10:89121528:C:G	rs148642017	C	G	C	Sox3.mouse_HMG_1	13	1	-	1.1131185520753357	-4.99498723795058	CAACAACAACACTGTCT
chr10	89186103	89186104	chr10:89186104:A:T	rs10887928	A	T	T	Sox3.mouse_HMG_1	14	1	-	4.206510619463851	-1.078966729231241	AAATTATTATAGTGTTT
chr10	89217758	89217759	chr10:89217759:T:C	rs139340762	T	C	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr10	89220725	89220726	chr10:89220726:C:T	rs141945037	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr10	89246153	89246154	chr10:89246154:A:G	rs143644959	A	G	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr10	89348282	89348283	chr10:89348283:G:A	rs117041426	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr10	89352370	89352371	chr10:89352371:C:T	rs116957189	C	T	C	Sox3.mouse_HMG_1	8	1	-	1.9820890865202598	3.0085025615308956	AAAAAATGGTGGTGTTA
chr10	89458144	89458145	chr10:89458145:T:C	rs17387244	T	C	T	Sox3.mouse_HMG_1	10	1	-	3.8364843064027356	-3.0717608525686018	AAACAATTTTATCTTTA
chr10	89468121	89468122	chr10:89468122:A:G	rs74922049	A	G	A	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr10	89478451	89478452	chr10:89478452:C:T	rs17122322	C	T	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr10	89535080	89535081	chr10:89535081:A:G	rs7917528	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr10	89849311	89849312	chr10:89849312:T:C	rs10881691	T	C	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr10	90087905	90087906	chr10:90087906:A:C	rs7070751	A	C	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr10	90170955	90170956	chr10:90170956:G:A	rs4142854	G	A	G	Sox3.mouse_HMG_1	8	1	+	7.485728844887708	8.512142319898343	GAACAATTGCATTGAAT
chr10	90599722	90599723	chr10:90599723:C:T	rs1274404	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr10	90880423	90880424	chr10:90880424:T:G	rs11594649	T	G	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr10	90897239	90897240	chr10:90897240:T:C	rs79703029	T	C	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr10	90989149	90989150	chr10:90989150:T:C	rs2043860	T	C	T	Sox3.mouse_HMG_1	4	1	-	2.497677428951477	-4.3146476630257595	AAACAACTGCAGTTTTT
chr10	91284695	91284696	chr10:91284696:G:A	rs181579242	G	A	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr10	91367255	91367256	chr10:91367256:T:C	rs61386275	T	C	C	Sox3.mouse_HMG_1	12	1	+	1.8023475679890204	-4.404118017228831	ACACAATTGTAATGTCT
chr10	91545468	91545469	chr10:91545469:C:T	rs10881919	C	T	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr10	91594210	91594211	chr10:91594211:G:A	rs60894624	G	A	G	Sox3.mouse_HMG_1	15	1	+	4.5759414863267125	5.645516722140277	TAGCAATTACAGTGTGG
chr10	91614083	91614084	chr10:91614084:A:C	rs7071622	A	C	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr10	91741900	91741901	chr10:91741901:A:T	rs74230686	A	T	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr10	91797097	91797098	chr10:91797098:T:C	rs1341263	T	C	T	Sox3.mouse_HMG_1	2	1	-	3.8531936637008295	-0.5547413152796323	ACACAATAATATTGAAA
chr10	91814160	91814161	chr10:91814161:G:C	rs10881973	G	C	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr10	91814205	91814206	chr10:91814206:A:C	rs7067554	A	C	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr10	91856870	91856871	chr10:91856871:G:T	rs1772188	G	T	G	Sox3.mouse_HMG_1	8	1	-	7.7856526233532986	8.918213086732374	TCACAATACTAGTGTTG
chr10	92895463	92895464	chr10:92895464:T:C	rs61862263	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr10	93126200	93126201	chr10:93126201:A:G	rs17108210	A	G	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr10	93275745	93275746	chr10:93275746:T:C	rs787655	T	C	C	Sox3.mouse_HMG_1	4	1	-	3.767237876030314	-3.0450872159469218	GAACAAGAACAGTGTGG
chr10	93707889	93707890	chr10:93707890:G:A	rs10882314	G	A	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr10	94007357	94007358	chr10:94007358:T:G	rs891982361	T	G	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr10	94018643	94018644	chr10:94018644:A:C	rs1425300	A	C	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr10	95035529	95035530	chr10:95035530:A:G	rs11188148	A	G	A	Sox3.mouse_HMG_1	11	1	+	3.0911504224635595	6.825627849509306	AGACAATTTCAATGTGT
chr10	95246875	95246876	chr10:95246876:T:A	rs111417553	T	A	T	Sox3.mouse_HMG_1	1	1	-	0.7324399650489954	-4.1578989612252055	AAACAATACCTTGGTAG
chr10	95476062	95476063	chr10:95476063:A:C	rs113517301	A	C	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr10	95535831	95535832	chr10:95535832:A:G	rs12772243	A	G	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr10	95664992	95664993	chr10:95664993:A:T	rs4918956	A	T	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr10	96288653	96288654	chr10:96288654:T:G	rs78573017	T	G	T	Sox3.mouse_HMG_1	1	1	-	1.1971260396832242	-4.440728856577889	AAGAAATGGTTTTGTTT
chr10	96331785	96331786	chr10:96331786:A:G	rs138421784	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr10	96334576	96334577	chr10:96334577:G:C	rs147966558	G	C	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr10	96667685	96667686	chr10:96667686:G:A	rs1992055	G	A	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr10	97217894	97217895	chr10:97217895:A:G	rs573451495	A	G	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr10	97259386	97259387	chr10:97259387:C:T	rs3740522	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr10	97259419	97259420	chr10:97259420:A:G	rs2253301	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr10	97609298	97609299	chr10:97609299:A:G	rs17108161	A	G	G	Sox3.mouse_HMG_1	10	1	+	1.6399811213937991	-5.268264037577542	TAATATTAGCAGTGTTT
chr10	97652911	97652912	chr10:97652912:T:C	rs12569774	T	C	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr10	97652919	97652920	chr10:97652920:T:C	rs11189310	T	C	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr10	97748048	97748049	chr10:97748049:T:A	rs11591898	T	A	T	Sox3.mouse_HMG_1	16	1	+	4.292846022444576	2.8931629369663563	GAACATTTATACTGTTT
chr10	97898164	97898165	chr10:97898165:T:C	rs611527	T	C	C	Sox3.mouse_HMG_1	14	1	+	2.0783330257587815	-4.0315578894899256	AATCAATTCCACTGTAT
chr10	98141542	98141543	chr10:98141543:A:G	rs80287982	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr10	98459616	98459617	chr10:98459617:T:A	rs10883100	T	A	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	98482351	98482352	chr10:98482352:T:G	rs35344122	T	G	T	Sox3.mouse_HMG_1	5	1	-	1.7837102795381121	-5.029434574753973	CAACTATCACATTGTAA
chr10	98781048	98781049	chr10:98781049:G:A	rs837737	G	A	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr10	99233141	99233142	chr10:99233142:G:A	rs17111328	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr10	99994041	99994042	chr10:99994042:A:C	rs61871667	A	C	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr10	99995031	99995032	chr10:99995032:G:C	rs12766478	G	C	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr10	100383290	100383291	chr10:100383291:C:T	rs685910	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr10	100392539	100392540	chr10:100392540:T:C	rs642370	T	C	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr10	100515884	100515885	chr10:100515885:C:A	rs3750627	C	A	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr10	100717248	100717249	chr10:100717249:T:C	rs7908640	T	C	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr10	100913949	100913950	chr10:100913950:C:G	rs10883560	C	G	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr10	100960174	100960175	chr10:100960175:T:A	rs1037281400	T	A	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr10	101507081	101507082	chr10:101507082:C:T	rs9419919	C	T	T	Sox3.mouse_HMG_1	6	1	-	8.261981299958565	8.261981299958565	AAACAAGTACATTGTAT
chr10	101826598	101826599	chr10:101826599:G:A	rs10883689	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr10	101889775	101889776	chr10:101889776:A:G	rs45493403	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr10	102569101	102569102	chr10:102569102:G:T	rs7091252	G	T	G	Sox3.mouse_HMG_1	3	1	-	1.9844071187203824	-4.740306344143319	CAACAATCTTATAGTGT
chr10	102668067	102668068	chr10:102668068:C:T	rs10883763	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr10	102967466	102967467	chr10:102967467:A:C	rs10883810	A	C	C	Sox3.mouse_HMG_1	6	1	-	3.9484313393061514	-2.9600236947902587	AAAGCATAACAGTGTTT
chr10	103012164	103012165	chr10:103012165:A:G	rs7071373	A	G	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr10	103284399	103284400	chr10:103284400:C:T	rs4918003	C	T	T	Sox3.mouse_HMG_1	11	1	-	1.272230305008538	-2.462247122037209	CAACTTTGGCAGTGTTG
chr10	103540128	103540129	chr10:103540129:A:G	rs6584557	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr10	103750027	103750028	chr10:103750028:C:T	rs7098795	C	T	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr10	104120905	104120906	chr10:104120906:A:C	rs73331554	A	C	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr10	104197604	104197605	chr10:104197605:C:T	rs139252427	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	104449989	104449990	chr10:104449990:C:T	rs553194581	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr10	104708094	104708095	chr10:104708095:A:G	rs3896224	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr10	104908506	104908507	chr10:104908507:T:C	rs6584634	T	C	C	Sox3.mouse_HMG_1	9	1	-	5.027170735841413	0.44417111612008137	AGACAATAGAGTTGTTG
chr10	105308482	105308483	chr10:105308483:T:A	rs12250239	T	A	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr10	105308514	105308515	chr10:105308515:T:C	rs12250243	T	C	C	Sox3.mouse_HMG_1	13	1	+	3.5044170003031923	3.7654308256728113	TAACAAAGACATTTTTA
chr10	105585846	105585847	chr10:105585847:T:C	rs75542667	T	C	.	Sox3.mouse_HMG_1	7	1	-	2.337374635644205	2.833444955421516	CATCCATAGCAGTGTTT
chr10	105648118	105648119	chr10:105648119:A:T	rs918319	A	T	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr10	106513351	106513352	chr10:106513352:T:C	rs11192931	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr10	106740973	106740974	chr10:106740974:G:A	rs9325521	G	A	G	Sox3.mouse_HMG_1	0	1	+	4.21810984652981	5.590926511991349	GAATAATACGATTGTTG
chr10	106817214	106817215	chr10:106817215:G:C	rs7100663	G	C	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr10	106829955	106829956	chr10:106829956:G:A	rs548176562	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr10	106829991	106829992	chr10:106829992:T:G	rs4390282	T	G	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr10	107075445	107075446	chr10:107075446:A:T	rs927983	A	T	T	Sox3.mouse_HMG_1	6	1	-	2.318526234830751	-4.589928799265661	TTCCAATGAAAGTGTTG
chr10	107553572	107553573	chr10:107553573:C:A	rs1441277	C	A	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr10	107727349	107727350	chr10:107727350:T:C	rs72827083	T	C	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr10	107806282	107806283	chr10:107806283:T:G	rs72829230	T	G	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr10	108105560	108105561	chr10:108105561:C:G	rs76422103	C	G	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr10	108181073	108181074	chr10:108181074:C:T	rs317442	C	T	T	Sox3.mouse_HMG_1	6	1	+	3.4414804001305805	10.087571169759501	TAGCAACAGTAGTGTTT
chr10	108358706	108358707	chr10:108358707:T:G	rs118010168	T	G	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr10	108512149	108512150	chr10:108512150:T:C	rs11194139	T	C	T	Sox3.mouse_HMG_1	0	1	+	4.5729201362410805	5.006482949205127	TACCAATGAAAGTGTTC
chr10	109071516	109071517	chr10:109071517:G:T	rs73342462	G	T	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr10	109277513	109277514	chr10:109277514:T:C	rs7904172	T	C	-	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr10	109343645	109343646	chr10:109343646:C:T	rs7075117	C	T	C	Sox3.mouse_HMG_1	12	1	+	0.7875534262928422	6.9940190115106935	CAAGAATGCAAGCGTTT
chr10	109742066	109742067	chr10:109742067:A:C	rs7097152	A	C	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr10	109770795	109770796	chr10:109770796:T:C	rs1268466	T	C	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr10	110039852	110039853	chr10:110039853:T:C	rs12358885	T	C	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr10	110068406	110068407	chr10:110068407:A:G	rs7915852	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr10	110135082	110135083	chr10:110135083:C:A	rs115945554	C	A	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr10	110271121	110271122	chr10:110271122:A:G	rs7894595	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr10	110345290	110345291	chr10:110345291:A:G	rs143676909	A	G	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr10	110817483	110817484	chr10:110817484:C:G	rs1980689	C	G	c	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr10	110993199	110993200	chr10:110993200:A:C	chr10:110993200:A:C	A	C	A	Sox3.mouse_HMG_1	13	1	+	5.6584906541599045	5.6584906541599045	CAACAATGATTTTATTT
chr10	111209868	111209869	chr10:111209869:A:C	rs1537768	A	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr10	111441057	111441058	chr10:111441058:A:G	rs4537696	A	G	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr10	111441072	111441073	chr10:111441073:C:A	rs4622189	C	A	C	Sox3.mouse_HMG_1	13	1	-	1.5774996738960572	-4.791619941499479	AGGCATTGTTAGTGTTT
chr10	111677890	111677891	chr10:111677891:G:A	rs74156556	G	A	g	Sox3.mouse_HMG_1	9	1	-	2.8082811880663434	2.7725750631817756	GGACAATGACATACTTT
chr10	111720880	111720881	chr10:111720881:G:A	rs78281897	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr10	111785820	111785821	chr10:111785821:A:G	rs118095556	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr10	112272135	112272136	chr10:112272136:C:T	rs1382063404	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr10	112304212	112304213	chr10:112304213:A:G	rs61431162	A	G	A	Sox3.mouse_HMG_1	11	1	-	2.1057355966368276	-3.951720512323524	AAAAAATAGCATTGAGT
chr10	112311309	112311310	chr10:112311310:G:T	rs11195886	G	T	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr10	112311315	112311316	chr10:112311316:A:G	rs10885328	A	G	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr10	112508035	112508036	chr10:112508036:C:T	rs11195977	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr10	112519657	112519658	chr10:112519658:G:A	rs67451905	G	A	G	Sox3.mouse_HMG_1	0	1	+	0.17470621876710196	1.5475228842286424	GAACACTGGCATTGAGG
chr10	112619993	112619994	chr10:112619994:A:G	rs7906356	A	G	a	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr10	112632001	112632002	chr10:112632002:A:G	rs76763495	A	G	A	Sox3.mouse_HMG_1	2	1	+	10.51561208292772	6.10767710394726	TAACAATATAATTGTAA
chr10	112663998	112663999	chr10:112663999:T:C	rs7082408	T	C	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr10	112792507	112792508	chr10:112792508:A:G	rs10787461	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.273943582939894	-3.3721471866890247	AAACAATAGCAGCATTG
chr10	112984588	112984589	chr10:112984589:T:C	rs140634278	T	C	C	Sox3.mouse_HMG_1	6	1	+	4.499960942644722	-2.146129826984196	CAACAATAAAACTATTT
chr10	113051071	113051072	chr10:113051072:T:C	rs115917913	T	C	T	Sox3.mouse_HMG_1	4	1	-	2.8528255697814537	-3.959499522195783	GAACAAGGGAAGTGTAG
chr10	113317774	113317775	chr10:113317775:C:T	rs1904443	C	T	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr10	113336730	113336731	chr10:113336731:C:T	rs569586	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr10	113454456	113454457	chr10:113454457:A:G	rs139202301	A	G	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr10	113456258	113456259	chr10:113456259:G:A	rs11196339	G	A	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr10	114019567	114019568	chr10:114019568:C:T	rs10787512	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr10	114605887	114605888	chr10:114605888:A:G	rs73362837	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr10	114749369	114749370	chr10:114749370:T:C	rs808312	T	C	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr10	114779861	114779862	chr10:114779862:C:A	rs151079414	C	A	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr10	114864984	114864985	chr10:114864985:A:C	chr10:114864985:A:C	A	C	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr10	115858177	115858178	chr10:115858178:A:G	rs114213299	A	G	A	Sox3.mouse_HMG_1	5	1	+	0.3783074149472722	-6.347826062355183	CAGCAATCCCATTGCTG
chr10	115858197	115858198	chr10:115858198:C:T	rs10787607	C	T	c	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr10	116307696	116307697	chr10:116307697:C:T	rs11817803	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr10	116476705	116476706	chr10:116476706:C:T	rs61729315	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr10	116700063	116700064	chr10:116700064:C:A	rs10787716	C	A	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr10	116709119	116709120	chr10:116709120:G:C	rs10749227	G	C	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr10	117227237	117227238	chr10:117227238:T:C	rs17095936	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr10	117324528	117324529	chr10:117324529:T:C	rs2794435	T	C	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	117775768	117775769	chr10:117775769:C:A	rs780781698	C	A	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr10	118374409	118374410	chr10:118374410:G:T	rs10886226	G	T	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr10	118568617	118568618	chr10:118568618:T:C	rs2420483	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr10	118871096	118871097	chr10:118871097:T:C	rs116203520	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr10	118962932	118962933	chr10:118962933:T:C	rs12571706	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr10	118999057	118999058	chr10:118999058:A:T	rs11598851	A	T	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr10	119161075	119161076	chr10:119161076:T:C	rs10749291	T	C	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr10	119218366	119218367	chr10:119218367:A:C	chr10:119218367:A:C	A	C	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr10	119218402	119218403	chr10:119218403:A:C	chr10:119218403:A:C	A	C	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr10	119251078	119251079	chr10:119251079:C:T	rs61874473	C	T	C	Sox3.mouse_HMG_1	3	1	+	3.2514889912529448	-2.7312871268813748	GAACATTTGCATTCTTT
chr10	119267806	119267807	chr10:119267807:C:T	rs79383846	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr10	119316605	119316606	chr10:119316606:G:A	rs150767262	G	A	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr10	119396638	119396639	chr10:119396639:C:T	rs41284420	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr10	119479389	119479390	chr10:119479390:A:G	rs11198957	A	G	G	Sox3.mouse_HMG_1	4	1	-	2.074762122321031	1.6637568338372506	GACCTATTGAATTGTTT
chr10	119479391	119479392	chr10:119479392:G:A	rs74608606	G	A	G	Sox3.mouse_HMG_1	2	1	-	2.074762122321031	2.59801026608558	GACCTATTGAATTGTTT
chr10	119480966	119480967	chr10:119480967:C:T	rs11198958	C	T	C	Sox3.mouse_HMG_1	15	1	-	5.091517168572938	6.161092404386503	AAACAATGGCAGTGGGG
chr10	119480980	119480981	chr10:119480981:T:C	rs36097989	T	C	T	Sox3.mouse_HMG_1	1	1	-	5.091517168572938	0.76408382517025	AAACAATGGCAGTGGGG
chr10	119480982	119480983	chr10:119480983:C:G	rs2039486	C	G	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr10	119693512	119693513	chr10:119693513:G:C	rs536894062	G	C	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr10	119981387	119981388	chr10:119981388:G:A	rs12774321	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr10	120012067	120012068	chr10:120012068:C:A	rs1889442	C	A	C	Sox3.mouse_HMG_1	7	1	+	3.4492911205713512	8.573912935718814	AAACAAACCCAGTGTTG
chr10	120058636	120058637	chr10:120058637:A:G	rs10736278	A	G	G	Sox3.mouse_HMG_1	1	1	+	4.7224486303649895	0.3950152869622973	CAATAAGGATATTGTTG
chr10	120265938	120265939	chr10:120265939:A:G	rs11199251	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr10	120962170	120962171	chr10:120962171:A:G	rs7080781	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr10	120962179	120962180	chr10:120962180:G:A	rs7905571	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr10	121158994	121158995	chr10:121158995:A:G	rs73366943	A	G	G	Sox3.mouse_HMG_1	10	1	+	2.9760219848361276	-3.9322231741352107	CAACCATGTCAGTGTGA
chr10	121289749	121289750	chr10:121289750:T:C	rs10886902	T	C	C	Sox3.mouse_HMG_1	14	1	+	2.704462305819638	-3.405428609429069	AACCAATGCTTGTGTTG
chr10	121334549	121334550	chr10:121334550:C:T	rs75733246	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr10	121415023	121415024	chr10:121415024:T:A	rs116905523	T	A	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr10	121415048	121415049	chr10:121415049:T:A	rs7094364	T	A	A	Sox3.mouse_HMG_1	12	1	+	3.7423587338704274	-1.8458333397626838	AAACAAAGGAATTCTTG
chr10	121514547	121514548	chr10:121514548:C:A	rs3135763	C	A	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr10	121773449	121773450	chr10:121773450:C:T	rs10886979	C	T	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr10	121842050	121842051	chr10:121842051:C:T	rs10886995	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr10	121932660	121932661	chr10:121932661:C:T	rs11200268	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr10	122047724	122047725	chr10:122047725:C:T	rs3981027	C	T	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr10	122256193	122256194	chr10:122256194:C:T	rs10887112	C	T	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	122285786	122285787	chr10:122285787:T:C	rs911775	T	C	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr10	122336693	122336694	chr10:122336694:C:T	rs3817284	C	T	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr10	122475670	122475671	chr10:122475671:G:A	rs79057333	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr10	122475709	122475710	chr10:122475710:T:G	rs72834453	T	G	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr10	122514154	122514155	chr10:122514155:C:T	rs2293871	C	T	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr10	122619751	122619752	chr10:122619752:A:G	rs113681994	A	G	A	Sox3.mouse_HMG_1	15	1	+	2.2765079984814363	1.2069327626678723	AAGCAATGTCAGTGCAG
chr10	122965691	122965692	chr10:122965692:G:A	rs75632745	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr10	122990448	122990449	chr10:122990449:C:T	rs3736580	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr10	122990449	122990450	chr10:122990450:G:A	rs112308343	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr10	123149301	123149302	chr10:123149302:C:T	rs2278506	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr10	123311917	123311918	chr10:123311918:G:A	rs77653442	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr10	123856352	123856353	chr10:123856353:G:A	rs876814	G	A	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr10	124304156	124304157	chr10:124304157:G:T	rs7098566	G	T	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr10	124455609	124455610	chr10:124455610:A:C	rs2459210	A	C	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr10	124484911	124484912	chr10:124484912:T:C	rs4427525	T	C	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr10	124573883	124573884	chr10:124573884:C:T	rs10901766	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr10	124649292	124649293	chr10:124649293:T:C	rs1046933922	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr10	124687038	124687039	chr10:124687039:G:C	rs10444190	G	C	G	Sox3.mouse_HMG_1	3	1	-	5.297034986436683	-1.6100000332209692	AAACAATTACAATATTA
chr10	124757060	124757061	chr10:124757061:A:G	rs4962696	A	G	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr10	125001416	125001417	chr10:125001417:T:C	rs371403317	T	C	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr10	125065281	125065282	chr10:125065282:C:A	rs61870346	C	A	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr10	125065291	125065292	chr10:125065292:G:C	rs112683036	G	C	G	Sox3.mouse_HMG_1	10	1	-	3.224783677429634	2.8811939730395575	GAACAAGGCTCTTGTTG
chr10	125155364	125155365	chr10:125155365:T:G	rs12254098	T	G	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr10	125331563	125331564	chr10:125331564:A:G	rs4288710	A	G	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr10	125628136	125628137	chr10:125628137:T:C	rs1379542979	T	C	T	Sox3.mouse_HMG_1	6	1	+	3.233661582293699	-3.4124291873352193	AAAAAATGCAAGTGTGG
chr10	125692479	125692480	chr10:125692480:C:T	rs77688920	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr10	125868610	125868611	chr10:125868611:G:A	rs904099012	G	A	G	Sox3.mouse_HMG_1	12	1	-	0.3497958428981755	6.556261428116027	GAACAAAGTAAGCGTTG
chr10	125879661	125879662	chr10:125879662:T:C	rs75420816	T	C	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr10	126045812	126045813	chr10:126045813:G:A	rs11244786	G	A	A	Sox3.mouse_HMG_1	11	1	+	2.000122462005937	-1.7343549650398105	GAACAACAAAAGTCTTT
chr10	126057802	126057803	chr10:126057803:C:T	rs898319	C	T	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr10	126092908	126092909	chr10:126092909:C:T	rs115974230	C	T	C	Sox3.mouse_HMG_1	8	1	-	2.1774843338767846	3.2038978088874206	AAGCAATAGCCTTGTGG
chr10	126246611	126246612	chr10:126246612:A:C	rs111902975	A	C	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr10	126286765	126286766	chr10:126286766:T:C	rs2366698	T	C	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr10	126352269	126352270	chr10:126352270:T:C	rs11597735	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr10	126733108	126733109	chr10:126733109:T:C	rs116490622	T	C	T	Sox3.mouse_HMG_1	2	1	-	7.098371602808766	2.690436623828305	TAACAATGCAAGTTTTT
chr10	126908931	126908932	chr10:126908932:C:G	rs139057052	C	G	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr10	126925272	126925273	chr10:126925273:T:C	rs7918772	T	C	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr10	126950473	126950474	chr10:126950474:T:C	rs934756832	T	C	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr10	127038803	127038804	chr10:127038804:G:A	rs4750895	G	A	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr10	127052010	127052011	chr10:127052011:C:T	rs9418724	C	T	C	Sox3.mouse_HMG_1	13	1	-	2.3004761575206616	-3.8076296325052543	AAACAATAAAATCGAAG
chr10	127388737	127388738	chr10:127388738:A:T	rs74590897	A	T	A	Sox3.mouse_HMG_1	3	1	+	0.5228938566307302	1.2648312013601077	CCAAAATGACAGTGTTC
chr10	127833425	127833426	chr10:127833426:T:G	rs490140	T	G	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr10	127942937	127942938	chr10:127942938:C:G	chr10:127942938:C:G	C	G	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr10	127943099	127943100	chr10:127943100:C:G	rs79506290	C	G	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr10	127943115	127943116	chr10:127943116:A:T	rs12414855	A	T	A	Sox3.mouse_HMG_1	4	1	+	0.8885251479990511	-5.425783278504775	AAACAGTAAGACTGTTT
chr10	128005787	128005788	chr10:128005788:G:A	rs7089981	G	A	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr10	128031464	128031465	chr10:128031465:C:T	rs67895236	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr10	128313759	128313760	chr10:128313760:C:G	rs2799401	C	G	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr10	128473820	128473821	chr10:128473821:A:G	rs12411816	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr10	128632039	128632040	chr10:128632040:T:C	rs11016396	T	C	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr10	128664857	128664858	chr10:128664858:G:A	rs72847143	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr10	128872088	128872089	chr10:128872089:A:C	rs76326952	A	C	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr10	128976788	128976789	chr10:128976789:A:G	rs73378793	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr10	129281862	129281863	chr10:129281863:A:G	rs11016735	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr10	129713371	129713372	chr10:129713372:G:A	rs58271999	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr10	129726562	129726563	chr10:129726563:G:A	rs6482753	G	A	G	Sox3.mouse_HMG_1	7	1	+	3.6869645502758606	3.1908942304985497	GAACAGTGGCATTGGTG
chr10	129757378	129757379	chr10:129757379:C:T	chr10:129757379:C:T	C	T	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr10	129949902	129949903	chr10:129949903:A:G	rs74162533	A	G	A	Sox3.mouse_HMG_1	12	1	-	3.8276734581178493	-2.3787921271000023	AAACTTTGGCAGTGTTT
chr10	129956177	129956178	chr10:129956178:C:T	rs77059422	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr10	130172401	130172402	chr10:130172402:G:C	rs1016374	G	C	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr10	130404891	130404892	chr10:130404892:T:A	rs10430608	T	A	A	Sox3.mouse_HMG_1	9	1	+	7.44698994953842	6.029051687593887	AGACAATGCTAATGTTA
chr10	130493703	130493704	chr10:130493704:A:G	rs4751209	A	G	a	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr10	130636218	130636219	chr10:130636219:A:C	rs1176472	A	C	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr10	130847783	130847784	chr10:130847784:G:A	rs7076678	G	A	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr10	130936724	130936725	chr10:130936725:C:T	rs1655103	C	T	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr10	131005686	131005687	chr10:131005687:T:C	rs11017653	T	C	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr10	131050432	131050433	chr10:131050433:G:T	rs11498447	G	T	G	Sox3.mouse_HMG_1	9	1	-	0.4197201892951773	-1.033924197533922	GAACCATGTCCTTGTCT
chr10	131291023	131291024	chr10:131291024:G:C	rs1530066	G	C	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr10	131358004	131358005	chr10:131358005:T:G	rs6482877	T	G	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr10	131398752	131398753	chr10:131398753:T:C	rs11595728	T	C	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr10	131398779	131398780	chr10:131398780:G:T	rs3125505	G	T	T	Sox3.mouse_HMG_1	7	1	+	4.042176604492753	2.5046274997505975	AAACTATGCAAATGTTA
chr10	131436287	131436288	chr10:131436288:G:A	rs4347298	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr10	131478300	131478301	chr10:131478301:G:T	rs10830012	G	T	T	Sox3.mouse_HMG_1	3	1	-	3.6241870453402054	-3.1005264175234926	ATACAATGATATTTATT
chr10	131478303	131478304	chr10:131478304:T:C	rs10830013	T	C	T	Sox3.mouse_HMG_1	0	1	-	3.6241870453402054	2.251370379878667	ATACAATGATATTTATT
chr10	131558787	131558788	chr10:131558788:T:C	rs7904911	T	C	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr10	131851672	131851673	chr10:131851673:T:G	rs993950890	T	G	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr10	132175869	132175870	chr10:132175870:A:G	rs4880339	A	G	A	Sox3.mouse_HMG_1	10	1	+	4.226899651275192	-2.6813455076961468	GACCAGTGAAATTGTTT
chr10	132183182	132183183	chr10:132183183:G:A	rs557601989	G	A	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr10	132264286	132264287	chr10:132264287:A:G	rs11146282	A	G	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr10	132489769	132489770	chr10:132489770:T:C	rs11146398	T	C	t	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr10	132494557	132494558	chr10:132494558:C:T	rs4501914	C	T	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr10	132514169	132514170	chr10:132514170:G:C	rs28403320	G	C	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr10	132748421	132748422	chr10:132748422:C:T	rs11146497	C	T	C	Sox3.mouse_HMG_1	0	1	-	1.3494188892467827	2.7222355547083223	GAACAAGGGAAGTGTGA
chr10	132803685	132803686	chr10:132803686:T:C	rs2804019	T	C	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr10	132867588	132867589	chr10:132867589:C:T	rs4880454	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr10	132976677	132976678	chr10:132976678:C:T	rs4598592	C	T	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr11	370830	370831	chr11:370831:T:C	rs11246135	T	C	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr11	387449	387450	chr11:387450:T:G	rs10902147	T	G	t	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr11	581802	581803	chr11:581803:T:C	rs12293369	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr11	690461	690462	chr11:690462:A:C	rs10902192	A	C	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr11	690471	690472	chr11:690472:T:C	rs10794331	T	C	t	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr11	748622	748623	chr11:748623:T:C	rs7122767	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr11	987676	987677	chr11:987677:G:A	rs6597954	G	A	G	Sox3.mouse_HMG_1	13	1	+	2.4407228732641104	-3.6673829167618055	AAAAAATTTCAGAGTTG
chr11	1356243	1356244	chr11:1356244:T:C	rs75054689	T	C	t	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr11	1409424	1409425	chr11:1409425:C:T	rs61867654	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr11	1515298	1515299	chr11:1515299:G:T	rs28509294	G	T	T	Sox3.mouse_HMG_1	3	1	-	2.151000984360503	-4.573712478503197	GAGCAAAGGTATTGTCT
chr11	1568469	1568470	chr11:1568470:T:A	rs115277124	T	A	T	Sox3.mouse_HMG_1	7	1	-	10.985067328869254	9.94358854390441	TAACAATACTATTGTGG
chr11	1785991	1785992	chr11:1785992:C:T	rs74050642	C	T	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr11	1908771	1908772	chr11:1908772:G:T	rs758647496	G	T	g	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr11	2537409	2537410	chr11:2537410:G:T	rs58978657	G	T	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr11	2768724	2768725	chr11:2768725:A:G	rs163160	A	G	A	Sox3.mouse_HMG_1	14	1	-	1.5299546874608985	-4.579936227787808	AAACAAGGAGAGTGTTC
chr11	2822445	2822446	chr11:2822446:T:C	rs11606985	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr11	3584184	3584185	chr11:3584185:T:C	rs7952334	T	C	-	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr11	3584201	3584202	chr11:3584202:C:T	rs7934605	C	T	-	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr11	3685045	3685046	chr11:3685046:G:A	rs4261313	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr11	3801342	3801343	chr11:3801343:T:G	rs10767606	T	G	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	4084222	4084223	chr11:4084223:T:A	rs7945918	T	A	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr11	4135691	4135692	chr11:4135692:C:T	rs10767845	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr11	4437406	4437407	chr11:4437407:A:G	rs1355940052	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr11	4539873	4539874	chr11:4539874:G:C	rs542922589	G	C	g	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr11	4872264	4872265	chr11:4872265:A:G	rs12806014	A	G	A	Sox3.mouse_HMG_1	16	1	-	3.349928211175999	-0.25186845444498296	AAGCAATATCCTTGTGT
chr11	5600953	5600954	chr11:5600954:A:C	rs7125514	A	C	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr11	5619266	5619267	chr11:5619267:T:C	rs7109361	T	C	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr11	5631742	5631743	chr11:5631743:G:A	rs2342381	G	A	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr11	5992433	5992434	chr11:5992434:T:C	rs79967006	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.701966980986834	-5.024166496315623	AAACTATGATCTAGTTT
chr11	6128165	6128166	chr11:6128166:T:G	rs11040763	T	G	T	Sox3.mouse_HMG_1	0	1	-	3.704705699400634	2.1151141870484373	AAACAATGCCTGTGGTT
chr11	6438795	6438796	chr11:6438796:C:A	rs10500671	C	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr11	6577269	6577270	chr11:6577270:G:A	chr11:6577270:G:A	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr11	6577305	6577306	chr11:6577306:C:T	chr11:6577306:C:T	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr11	6602950	6602951	chr11:6602951:T:C	rs4758438	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr11	6609310	6609311	chr11:6609311:C:T	rs140322345	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr11	6626699	6626700	chr11:6626700:C:T	rs34782445	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr11	6648932	6648933	chr11:6648933:A:G	rs60844224	A	G	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr11	6677175	6677176	chr11:6677176:T:C	rs142644037	T	C	T	Sox3.mouse_HMG_1	12	1	+	9.337588650683195	3.131123065465343	ATACAATGGAATTGTAT
chr11	6707622	6707623	chr11:6707623:C:T	rs12361973	C	T	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr11	6926221	6926222	chr11:6926222:T:G	rs544805164	T	G	T	Sox3.mouse_HMG_1	10	1	-	2.704899912734841	-3.8597555418464196	AAACAATGACAATTTCG
chr11	7020359	7020360	chr11:7020360:T:C	rs191074046	T	C	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr11	7186592	7186593	chr11:7186593:T:C	rs2135871	T	C	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr11	7309472	7309473	chr11:7309473:A:G	rs11041306	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.686831204667132	-2.9592595649617888	GGACAATGACATTGAGG
chr11	7353558	7353559	chr11:7353559:A:G	rs12222809	A	G	A	Sox3.mouse_HMG_1	2	1	+	1.9460476296445663	-2.461887349335896	CAACAAGGTCTGTGTTT
chr11	7367476	7367477	chr11:7367477:T:C	rs7930845	T	C	T	Sox3.mouse_HMG_1	16	1	-	2.2690419616698705	2.702873406390977	AAGCAATGAAATTATGA
chr11	7620799	7620800	chr11:7620800:G:A	rs10769813	G	A	A	Sox3.mouse_HMG_1	11	1	+	2.1236820432113146	-1.610795383834433	AAACAAGGGACGTGTTT
chr11	7745991	7745992	chr11:7745992:G:A	rs12226332	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr11	7879820	7879821	chr11:7879821:C:T	rs2361065	C	T	T	Sox3.mouse_HMG_1	12	1	+	5.207381481413101	11.413847066630952	GAATAATGATATCGTTA
chr11	7909830	7909831	chr11:7909831:T:G	rs539539434	T	G	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr11	7973048	7973049	chr11:7973049:A:T	rs3921516	A	T	A	Sox3.mouse_HMG_1	0	1	+	1.662526574530769	-0.3606277507854755	AAGCCATATTACTGTTT
chr11	7977197	7977198	chr11:7977198:T:C	rs112496036	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr11	8055760	8055761	chr11:8055761:C:T	rs58666270	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr11	8327329	8327330	chr11:8327330:A:T	rs1563205	A	T	T	Sox3.mouse_HMG_1	12	1	-	2.6137712125330514	-2.974420861100059	AAACAATATTACTGAAA
chr11	8338181	8338182	chr11:8338182:T:C	rs111544768	T	C	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr11	8350952	8350953	chr11:8350953:G:A	rs6578961	G	A	G	Sox3.mouse_HMG_1	7	1	+	3.450745223426247	2.954674903648937	GAACAATGACAGGGATA
chr11	8566847	8566848	chr11:8566848:T:C	rs531255716	T	C	t	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr11	8658536	8658537	chr11:8658537:G:A	rs112096207	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr11	8658549	8658550	chr11:8658550:C:T	rs148939556	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr11	8919155	8919156	chr11:8919156:G:T	rs3763914	G	T	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr11	9007044	9007045	chr11:9007045:A:G	rs77848559	A	G	A	Sox3.mouse_HMG_1	11	1	-	2.382342084042625	-3.675114024917728	TAACAACCATATTGTAT
chr11	9150884	9150885	chr11:9150885:A:G	rs10769995	A	G	A	Sox3.mouse_HMG_1	7	1	-	7.783887080722481	3.700744050539865	AATCAATTAAAGTGTTA
chr11	9561109	9561110	chr11:9561110:T:G	rs72854173	T	G	T	Sox3.mouse_HMG_1	2	1	-	4.621945857023083	-1.8033890226982336	AAAAAAAAAAATTGTTT
chr11	9648856	9648857	chr11:9648857:G:C	rs11042463	G	C	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr11	9714385	9714386	chr11:9714386:G:A	rs1874476	G	A	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr11	9747011	9747012	chr11:9747012:T:G	rs6483654	T	G	G	Sox3.mouse_HMG_1	2	1	-	5.798985087168676	-0.6263497925526369	CAACAATATTATGGTAA
chr11	9747014	9747015	chr11:9747015:C:T	rs6483655	C	T	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr11	9809184	9809185	chr11:9809185:A:T	rs10770066	A	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr11	9913427	9913428	chr11:9913428:A:T	rs528390346	A	T	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr11	10109863	10109864	chr11:10109864:T:C	rs2044146	T	C	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr11	10109884	10109885	chr11:10109885:T:G	chr11:10109885:T:G	T	G	T	Sox3.mouse_HMG_1	9	1	-	4.2951281317513255	5.7487725185804255	GAAAAATAAAAATGTTT
chr11	10162472	10162473	chr11:10162473:T:C	rs2278630	T	C	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr11	10244329	10244330	chr11:10244330:G:A	rs72850420	G	A	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr11	10307195	10307196	chr11:10307196:G:T	rs35440828	G	T	G	Sox3.mouse_HMG_1	13	1	+	6.319340388565951	-0.049779226829583134	AAGCAATTATATTGTCC
chr11	10592531	10592532	chr11:10592532:T:G	rs16908009	T	G	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr11	10592557	10592558	chr11:10592558:T:C	rs369498402	T	C	T	Sox3.mouse_HMG_1	1	1	-	3.161252823039828	-1.166180520362862	AAACAATCTGATTGTGT
chr11	10634866	10634867	chr11:10634867:T:C	rs7108708	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr11	10746802	10746803	chr11:10746803:A:G	rs10840486	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr11	10796304	10796305	chr11:10796305:A:C	rs142260364	A	C	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr11	10866885	10866886	chr11:10866886:C:T	rs7126003	C	T	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr11	10886768	10886769	chr11:10886769:A:G	rs7951320	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr11	10896731	10896732	chr11:10896732:A:C	rs2896567	A	C	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr11	10933770	10933771	chr11:10933771:G:T	rs80006682	G	T	g	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr11	10983399	10983400	chr11:10983400:G:T	rs541088068	G	T	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr11	11116642	11116643	chr11:11116643:G:A	rs11043102	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr11	11179511	11179512	chr11:11179512:A:G	chr11:11179512:A:G	A	G	A	Sox3.mouse_HMG_1	10	1	+	1.5812344893241148	-5.327010669647224	AGACAGTAACATTATTG
chr11	11219838	11219839	chr11:11219839:G:C	rs6484751	G	C	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr11	11251423	11251424	chr11:11251424:G:A	rs7107507	G	A	g	Sox3.mouse_HMG_1	11	1	+	3.109504427539419	-0.6249729995063265	AAACAATAGCAGTTCTG
chr11	11378144	11378145	chr11:11378145:A:G	rs1994399	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr11	11519533	11519534	chr11:11519534:A:G	rs11601248	A	G	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr11	11709645	11709646	chr11:11709646:G:A	rs117630104	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr11	11740773	11740774	chr11:11740774:C:G	rs897356	C	G	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr11	11740810	11740811	chr11:11740811:A:T	rs897357	A	T	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr11	11789022	11789023	chr11:11789023:A:T	rs2034801	A	T	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr11	11856830	11856831	chr11:11856831:G:A	rs72856345	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr11	11918284	11918285	chr11:11918285:G:A	rs75403122	G	A	G	Sox3.mouse_HMG_1	13	1	+	8.63656228714096	2.5284564971150427	AAAAAATATCAGTGTTA
chr11	11987592	11987593	chr11:11987593:T:C	rs977792	T	C	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr11	12063802	12063803	chr11:12063803:A:G	rs12224959	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr11	12133535	12133536	chr11:12133536:C:A	rs977244	C	A	A	Sox3.mouse_HMG_1	13	1	-	11.680914151484222	5.311794536088688	AAACAATATTATCGTTG
chr11	12154208	12154209	chr11:12154209:C:T	rs73414208	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr11	12193998	12193999	chr11:12193999:T:C	rs4757259	T	C	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr11	12201066	12201067	chr11:12201067:A:G	rs1048659607	A	G	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr11	12201076	12201077	chr11:12201077:C:T	rs117195299	C	T	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr11	12224151	12224152	chr11:12224152:T:C	rs74878063	T	C	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr11	12270460	12270461	chr11:12270461:T:C	rs59709231	T	C	T	Sox3.mouse_HMG_1	6	1	+	3.360925309325857	-3.285165460303063	CAGCAGTGGCAGTGTTG
chr11	12276420	12276421	chr11:12276421:T:C	rs2896607	T	C	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr11	12412777	12412778	chr11:12412778:T:C	rs75486022	T	C	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr11	12565842	12565843	chr11:12565843:T:C	rs67512993	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr11	12676830	12676831	chr11:12676831:C:G	rs7941081	C	G	C	Sox3.mouse_HMG_1	8	1	-	2.937786641263604	2.8316396528951637	AAATAAAAGAATTGTTA
chr11	12676842	12676843	chr11:12676843:G:T	rs7940174	G	T	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr11	12828282	12828283	chr11:12828283:G:A	rs182679763	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	12842295	12842296	chr11:12842296:A:G	rs147903307	A	G	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr11	13039465	13039466	chr11:13039466:C:T	rs138654835	C	T	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr11	13039482	13039483	chr11:13039483:T:C	rs4757096	T	C	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr11	13247808	13247809	chr11:13247809:G:A	rs12417293	G	A	G	Sox3.mouse_HMG_1	5	1	-	3.034423628956133	2.939113449151808	GAACACTGTGAGTGTTT
chr11	13257894	13257895	chr11:13257895:A:G	rs75606758	A	G	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr11	13318606	13318607	chr11:13318607:G:C	rs75452169	G	C	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr11	13328011	13328012	chr11:13328012:T:C	rs28711392	T	C	T	Sox3.mouse_HMG_1	10	1	-	1.9031550119460205	-5.005090147025318	AAACAGGTATAGTGTTG
chr11	13328012	13328013	chr11:13328013:A:G	rs77658328	A	G	A	Sox3.mouse_HMG_1	9	1	-	1.9031550119460205	1.9388611368305886	AAACAGGTATAGTGTTG
chr11	13562236	13562237	chr11:13562237:G:A	rs10500786	G	A	-	Sox3.mouse_HMG_1	8	1	+	2.5314188144773535	3.5578322894879886	GACCAATGGTAGTGATA
chr11	13680836	13680837	chr11:13680837:G:C	rs10766104	G	C	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr11	13766153	13766154	chr11:13766154:C:T	rs1503311	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr11	13940657	13940658	chr11:13940658:A:T	rs7120608	A	T	T	Sox3.mouse_HMG_1	2	1	+	0.7132343097515701	-5.188852426205199	GCAGAATGGAAGTGTTG
chr11	14194566	14194567	chr11:14194567:C:G	rs6486180	C	G	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr11	14337321	14337322	chr11:14337322:C:T	rs118167292	C	T	c	Sox3.mouse_HMG_1	5	1	-	5.2376106937979285	11.963744171100386	AGACAGTGTCAGTGTTG
chr11	14753044	14753045	chr11:14753045:A:G	rs1007392	A	G	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr11	15106304	15106305	chr11:15106305:G:A	rs10734230	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr11	15195727	15195728	chr11:15195728:G:A	rs57506518	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr11	15476814	15476815	chr11:15476815:C:T	rs10832445	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr11	15731055	15731056	chr11:15731056:G:A	rs116262006	G	A	G	Sox3.mouse_HMG_1	10	1	+	9.420366490657456	16.32861164962879	GAACAATTACGTTGTTG
chr11	15780441	15780442	chr11:15780442:A:T	rs150027672	A	T	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr11	15780980	15780981	chr11:15780981:G:A	rs7106868	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr11	15845328	15845329	chr11:15845329:G:T	rs144454271	G	T	G	Sox3.mouse_HMG_1	8	1	-	5.840508889031006	6.973069352410082	GAACAAAGCAATTGTAT
chr11	15845353	15845354	chr11:15845354:T:C	rs183094706	T	C	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr11	15873631	15873632	chr11:15873632:G:A	rs4756835	G	A	G	Sox3.mouse_HMG_1	0	1	+	11.538317105761324	12.91113377122286	GAACAATTAAATTGTCT
chr11	16296232	16296233	chr11:16296233:C:A	rs61883178	C	A	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr11	16504647	16504648	chr11:16504648:C:A	rs117314999	C	A	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr11	16985672	16985673	chr11:16985673:A:G	rs2353369	A	G	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr11	17277842	17277843	chr11:17277843:T:C	rs214082	T	C	C	Sox3.mouse_HMG_1	10	1	+	1.221396719431373	1.469676244017125	AAGGAATGTTTTTGTTT
chr11	17515321	17515322	chr11:17515322:C:G	rs10766407	C	G	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr11	17952059	17952060	chr11:17952060:A:G	rs2299628	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr11	18275182	18275183	chr11:18275183:G:A	rs12274683	G	A	a	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr11	18402675	18402676	chr11:18402676:G:C	rs10832932	G	C	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr11	18408443	18408444	chr11:18408444:A:C	rs35292478	A	C	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr11	18540643	18540644	chr11:18540644:C:T	rs11024706	C	T	T	Sox3.mouse_HMG_1	11	1	-	3.923975830475994	0.1894984034302465	ACATAATGCCAGTGTTA
chr11	18803122	18803123	chr11:18803123:C:G	rs4601750	C	G	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr11	19025147	19025148	chr11:19025148:G:A	rs986283	G	A	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr11	19683849	19683850	chr11:19683850:T:G	rs4456242	T	G	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr11	19721537	19721538	chr11:19721538:C:T	chr11:19721538:C:T	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr11	19821684	19821685	chr11:19821685:G:A	rs61876751	G	A	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr11	19891038	19891039	chr11:19891039:A:G	rs77057226	A	G	A	Sox3.mouse_HMG_1	6	1	-	2.8958308836716036	-3.7502598859573153	TAAAAATTATATAGTTA
chr11	19921136	19921137	chr11:19921137:G:T	rs10833194	G	T	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr11	19921175	19921176	chr11:19921176:A:C	rs55939373	A	C	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr11	19980954	19980955	chr11:19980955:G:A	rs12805144	G	A	A	Sox3.mouse_HMG_1	6	1	-	6.918856056272887	13.564946825901805	AAACAACAATATTCTTT
chr11	19980969	19980970	chr11:19980970:G:A	rs35352446	G	A	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr11	20097765	20097766	chr11:20097766:A:G	rs2289563	A	G	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr11	20278530	20278531	chr11:20278531:T:C	rs2403580	T	C	T	Sox3.mouse_HMG_1	6	1	+	7.957545627431491	1.311454857802572	AAGCAATGGCTTTGTTT
chr11	20590027	20590028	chr11:20590028:A:G	rs75190077	A	G	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr11	20938418	20938419	chr11:20938419:T:C	rs11025819	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr11	21255642	21255643	chr11:21255643:T:G	rs10766779	T	G	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr11	21515674	21515675	chr11:21515675:C:T	rs12292593	C	T	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr11	21928938	21928939	chr11:21928939:T:C	rs1487814	T	C	T	Sox3.mouse_HMG_1	5	1	-	3.899387070111149	-2.8267464071913073	AAGCAATTACACTGTCT
chr11	22079278	22079279	chr11:22079279:T:C	rs967822066	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr11	22079289	22079290	chr11:22079290:G:C	rs140124588	G	C	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr11	22991664	22991665	chr11:22991665:T:C	rs115048705	T	C	.	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	23494098	23494099	chr11:23494099:A:T	rs68062279	A	T	A	Sox3.mouse_HMG_1	16	1	-	1.3263326019114903	-0.07335048356672913	GAACTATGGCAATGTCT
chr11	23494115	23494116	chr11:23494116:C:T	rs68016147	C	T	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr11	23693736	23693737	chr11:23693737:G:A	rs10741991	G	A	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	23933532	23933533	chr11:23933533:A:G	rs7130113	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr11	23954326	23954327	chr11:23954327:A:G	rs10742020	A	G	A	Sox3.mouse_HMG_1	3	1	+	2.1296898431621676	1.9473682863682147	AAAAAATGAAAGTTTTA
chr11	24145523	24145524	chr11:24145524:C:T	rs4526774	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr11	24234619	24234620	chr11:24234620:C:G	rs2068454	C	G	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr11	24324387	24324388	chr11:24324388:A:T	rs78908744	A	T	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr11	24858703	24858704	chr11:24858704:C:T	rs11028233	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr11	24919844	24919845	chr11:24919845:C:T	rs12291770	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr11	24983568	24983569	chr11:24983569:A:C	rs12363995	A	C	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr11	25068718	25068719	chr11:25068719:A:G	rs1374134	A	G	a	Sox3.mouse_HMG_1	11	1	-	12.181161736224556	6.123705627264204	CAACAATTACATTGTAA
chr11	25163700	25163701	chr11:25163701:G:A	rs10767315	G	A	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr11	25675036	25675037	chr11:25675037:T:C	rs67069380	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr11	25798646	25798647	chr11:25798647:G:A	rs149319608	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr11	25843013	25843014	chr11:25843014:G:A	rs10834819	G	A	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr11	26045447	26045448	chr11:26045448:G:T	rs10834898	G	T	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr11	26284118	26284119	chr11:26284119:T:A	rs79353428	T	A	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr11	26336223	26336224	chr11:26336224:A:G	rs6484203	A	G	G	Sox3.mouse_HMG_1	0	1	+	6.378739669288815	5.005923003827276	AGACAATGATAGTTTTG
chr11	26384705	26384706	chr11:26384706:A:G	rs182480027	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr11	26463643	26463644	chr11:26463644:T:A	rs72889128	T	A	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr11	26550687	26550688	chr11:26550688:T:A	rs449621	T	A	T	Sox3.mouse_HMG_1	4	1	-	6.135475981550026	-0.1788324449537998	AAACAATCCAAATGTTT
chr11	26649813	26649814	chr11:26649814:A:T	rs4254034	A	T	T	Sox3.mouse_HMG_1	4	1	+	2.3586373946955925	-3.955671031808235	GCACAATTTAAGTGTAA
chr11	26909693	26909694	chr11:26909694:T:G	rs7105515	T	G	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr11	27118651	27118652	chr11:27118652:G:A	rs972904	G	A	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr11	27196245	27196246	chr11:27196246:C:T	rs10835126	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr11	27196274	27196275	chr11:27196275:A:G	rs76446919	A	G	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	27239794	27239795	chr11:27239795:T:A	chr11:27239795:T:A	T	A	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr11	27239794	27239795	chr11:27239795:T:C	rs3892730	T	C	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr11	27328842	27328843	chr11:27328843:G:C	rs11029945	G	C	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr11	27348358	27348359	chr11:27348359:T:C	rs1871254	T	C	T	Sox3.mouse_HMG_1	7	1	-	3.3007809805853956	3.7968513003627065	TAAAAATAAAATCGTTT
chr11	27367855	27367856	chr11:27367856:C:T	rs2447996	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr11	27498156	27498157	chr11:27498157:T:C	rs140815042	T	C	T	Sox3.mouse_HMG_1	12	1	+	4.248714327045376	-1.957751258172475	TAACATTGACAGTGTAA
chr11	27572982	27572983	chr11:27572983:T:A	rs11030053	T	A	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr11	27573010	27573011	chr11:27573011:A:G	rs7124596	A	G	G	Sox3.mouse_HMG_1	14	1	+	2.7024625636307715	1.5612906605438661	TAACAATAATAGGGATG
chr11	27935152	27935153	chr11:27935153:C:T	chr11:27935153:C:T	C	T	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr11	27935158	27935159	chr11:27935159:A:G	rs1270798049	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr11	29502532	29502533	chr11:29502533:C:G	rs2356592	C	G	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr11	30006813	30006814	chr11:30006814:A:C	rs1337116	A	C	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr11	30538359	30538360	chr11:30538360:A:G	rs515621	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr11	30547163	30547164	chr11:30547164:A:G	rs12289767	A	G	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr11	30547184	30547185	chr11:30547185:C:T	rs12276680	C	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr11	30603434	30603435	chr11:30603435:T:C	rs77007605	T	C	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr11	30817356	30817357	chr11:30817357:C:A	rs539352	C	A	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr11	31326295	31326296	chr11:31326296:G:A	rs12577026	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	31815078	31815079	chr11:31815079:C:T	rs1806159	C	T	C	Sox3.mouse_HMG_1	7	1	-	2.383405365706043	1.8873350459287332	GGACAATGTTATTTTAA
chr11	31828557	31828558	chr11:31828558:G:T	rs1806153	G	T	T	Sox3.mouse_HMG_1	6	1	-	3.287124397357379	3.0247601328898885	CAACAACGACAGAGTTG
chr11	32069691	32069692	chr11:32069692:T:C	rs224608	T	C	C	Sox3.mouse_HMG_1	2	1	-	8.514525971614402	4.1065909926339454	AAACAATGATATTTATT
chr11	32088471	32088472	chr11:32088472:T:C	rs542378633	T	C	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr11	32109338	32109339	chr11:32109339:C:T	rs142333054	C	T	C	Sox3.mouse_HMG_1	9	1	+	6.572934030935757	6.537227906051189	AGGCAATGACATTGTAA
chr11	32386349	32386350	chr11:32386350:G:T	rs72907602	G	T	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr11	32425728	32425729	chr11:32425729:A:G	rs72893506	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr11	32437585	32437586	chr11:32437586:C:T	rs72893539	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr11	32631050	32631051	chr11:32631051:T:C	rs12284205	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr11	33011880	33011881	chr11:33011881:T:C	rs12275192	T	C	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr11	33062618	33062619	chr11:33062619:A:G	rs73489433	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.791198451528636	-1.8548923181002834	GAAAAATGAAAATGTTT
chr11	33310759	33310760	chr11:33310760:G:A	rs187631460	G	A	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr11	33373875	33373876	chr11:33373876:G:A	rs35764558	G	A	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr11	33530889	33530890	chr11:33530890:T:C	rs1535063	T	C	C	Sox3.mouse_HMG_1	14	1	+	3.8589747427345618	-2.250916172514146	GAAAAATGATTTTGTTA
chr11	33858345	33858346	chr11:33858346:G:T	rs7106112	G	T	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr11	33960124	33960125	chr11:33960125:T:C	rs10836134	T	C	C	Sox3.mouse_HMG_1	8	1	-	1.1926936325292072	0.16628015751857123	AAGCAATGATGGTGTGG
chr11	34075706	34075707	chr11:34075707:G:A	rs10047487	G	A	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr11	34442191	34442192	chr11:34442192:T:C	rs4756146	T	C	T	Sox3.mouse_HMG_1	10	1	-	3.904337425785055	-3.003907733186284	AAGCAATTCAATTTTTA
chr11	34442212	34442213	chr11:34442213:A:G	rs524154	A	G	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr11	34624088	34624089	chr11:34624089:A:G	rs17292176	A	G	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr11	34890741	34890742	chr11:34890742:T:A	rs2915224	T	A	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr11	35011337	35011338	chr11:35011338:T:C	rs117888740	T	C	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr11	35047047	35047048	chr11:35047048:A:G	rs563528273	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr11	35047058	35047059	chr11:35047059:C:G	rs2785155	C	G	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr11	35073776	35073777	chr11:35073777:T:C	rs2553828	T	C	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr11	35073800	35073801	chr11:35073801:T:C	rs138040180	T	C	T	Sox3.mouse_HMG_1	14	1	+	7.2484106085174655	1.1385196932687576	TAATAATGAAATTGTAT
chr11	35190740	35190741	chr11:35190741:A:G	rs7930724	A	G	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr11	35337962	35337963	chr11:35337963:A:G	rs7927023	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr11	35352303	35352304	chr11:35352304:T:C	rs7127824	T	C	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr11	35352326	35352327	chr11:35352327:G:T	rs7111949	G	T	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr11	35582961	35582962	chr11:35582962:C:G	rs12421534	C	G	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr11	35823379	35823380	chr11:35823380:A:G	rs11033288	A	G	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr11	36104107	36104108	chr11:36104108:C:T	rs10836492	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr11	36180129	36180130	chr11:36180130:T:G	rs1997118	T	G	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr11	36212498	36212499	chr11:36212499:C:T	rs3980393	C	T	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr11	36296117	36296118	chr11:36296118:G:A	rs4543964	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr11	36412191	36412192	chr11:36412192:A:G	rs12224636	A	G	A	Sox3.mouse_HMG_1	11	1	-	1.1430439012012137	-4.914412207759139	TAACAAGTGTCTTGTTG
chr11	36452748	36452749	chr11:36452749:C:T	rs7483893	C	T	C	Sox3.mouse_HMG_1	13	1	-	7.206468542994681	1.098362752968765	AAACAATGGTAGCGTTC
chr11	36488015	36488016	chr11:36488016:C:T	rs5030507	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr11	36520170	36520171	chr11:36520171:T:C	rs76726041	T	C	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr11	36724473	36724474	chr11:36724474:C:T	rs11033768	C	T	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr11	37108733	37108734	chr11:37108734:T:G	rs4145291	T	G	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr11	38819942	38819943	chr11:38819943:T:A	rs10837053	T	A	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr11	38937724	38937725	chr11:38937725:A:G	rs6485041	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr11	39012004	39012005	chr11:39012005:A:G	rs1461630	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr11	39102784	39102785	chr11:39102785:A:G	rs1461625	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr11	39630145	39630146	chr11:39630146:C:G	rs16933588	C	G	C	Sox3.mouse_HMG_1	8	1	+	4.115428941049619	4.2215759294180595	AAATTATACTAGTGTTT
chr11	40179420	40179421	chr11:40179421:A:C	chr11:40179421:A:C	A	C	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr11	40294519	40294520	chr11:40294520:C:A	rs191303229	C	A	c	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr11	40925437	40925438	chr11:40925438:C:A	rs12421406	C	A	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr11	40925457	40925458	chr11:40925458:C:A	rs12421408	C	A	C	Sox3.mouse_HMG_1	3	1	+	3.804616373507513	-2.9200970893561857	GAACAATGGGCTTGTTA
chr11	40987552	40987553	chr11:40987553:C:T	rs34673145	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr11	41498803	41498804	chr11:41498804:T:C	rs1261661522	T	C	T	Sox3.mouse_HMG_1	5	1	-	5.6345984720196975	-1.0915350052827568	AAACAATTGTAATATTT
chr11	42016188	42016189	chr11:42016189:A:C	rs61883367	A	C	A	Sox3.mouse_HMG_1	12	1	-	6.345747066378003	-0.22238100428961904	AAAAAATGCTATTGTGA
chr11	42983598	42983599	chr11:42983599:A:G	rs16937186	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr11	43032399	43032400	chr11:43032400:C:T	rs1863368	C	T	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr11	43378733	43378734	chr11:43378734:C:T	rs17508618	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr11	43923340	43923341	chr11:43923341:A:G	rs576791459	A	G	A	Sox3.mouse_HMG_1	4	1	+	7.698185194042165	0.8858601020649299	AAACACTTGTAGTGTTG
chr11	44019283	44019284	chr11:44019284:C:A	rs7117014	C	A	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr11	44531173	44531174	chr11:44531174:C:T	rs7108371	C	T	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr11	44571157	44571158	chr11:44571158:G:A	rs73452897	G	A	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr11	44927686	44927687	chr11:44927687:A:C	rs835989	A	C	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr11	44980150	44980151	chr11:44980151:T:C	rs12271690	T	C	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr11	44980160	44980161	chr11:44980161:A:G	rs12277907	A	G	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr11	45284874	45284875	chr11:45284875:C:T	rs74958363	C	T	C	Sox3.mouse_HMG_1	5	1	-	1.1182166858568128	7.844350163159266	GAACAGTGACATTGACA
chr11	45715976	45715977	chr11:45715977:T:C	rs2955677	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr11	46224725	46224726	chr11:46224726:T:G	rs72908091	T	G	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr11	47246998	47246999	chr11:47246999:T:G	rs7129661	T	G	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr11	47764861	47764862	chr11:47764862:A:G	rs10838760	A	G	A	Sox3.mouse_HMG_1	15	1	-	1.203254884182189	-3.0992469136132947	AAGGAATGCCATAGTTG
chr11	47768463	47768464	chr11:47768464:A:G	rs140165397	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr11	47982371	47982372	chr11:47982372:A:G	rs72899720	A	G	A	Sox3.mouse_HMG_1	5	1	+	4.288764757305901	-2.437368719996556	GCCCAATGGAATTGTTT
chr11	48088240	48088241	chr11:48088241:G:A	rs7479361	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr11	48125144	48125145	chr11:48125145:A:G	rs1435768310	A	G	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr11	49327814	49327815	chr11:49327815:G:T	rs2204366	G	T	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr11	49734262	49734263	chr11:49734263:T:C	rs10839350	T	C	T	Sox3.mouse_HMG_1	4	1	-	2.8038234894195093	-4.008501602557726	AAACAACAGATTTGTTG
chr11	50657446	50657447	chr11:50657447:A:G	rs11525488	A	G	.	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr11	52826804	52826805	chr11:52826805:A:G	rs1185325161	A	G	.	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr11	54794548	54794549	chr11:54794549:G:A	rs10902326	G	A	.	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr11	54865998	54865999	chr11:54865999:G:C	chr11:54865999:G:C	G	C	.	Sox3.mouse_HMG_1	3	1	-	0.9586241848813903	-5.948410834776263	AAACAAAGGTTTTGTAG
chr11	56700310	56700311	chr11:56700311:A:G	rs74218731	A	G	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr11	56783680	56783681	chr11:56783681:A:G	chr11:56783681:A:G	A	G	A	Sox3.mouse_HMG_1	8	1	+	3.3057628236339758	2.27934934862334	AAACCACGACAGTGTTA
chr11	57199560	57199561	chr11:57199561:G:A	rs140564255	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr11	57936206	57936207	chr11:57936207:C:T	rs77165219	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr11	57936252	57936253	chr11:57936253:C:G	rs11229169	C	G	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr11	57979929	57979930	chr11:57979930:C:T	rs10792121	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr11	57983881	57983882	chr11:57983882:G:A	rs12792638	G	A	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr11	58575747	58575748	chr11:58575748:C:G	rs114681673	C	G	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr11	58580912	58580913	chr11:58580913:A:G	rs11229535	A	G	A	Sox3.mouse_HMG_1	12	1	-	3.2330180058651776	-2.973447579352674	GAACTATAAAATTTTTG
chr11	58745982	58745983	chr11:58745983:T:C	rs78018368	T	C	T	Sox3.mouse_HMG_1	14	1	+	7.436214675122388	1.3263237598736808	AAGGAATGAAATTGTTT
chr11	58745988	58745989	chr11:58745989:T:C	rs10896822	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr11	58905228	58905229	chr11:58905229:C:A	chr11:58905229:C:A	C	A	.	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr11	58905242	58905243	chr11:58905243:C:T	rs11820828	C	T	.	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr11	59025604	59025605	chr11:59025605:A:G	rs11229741	A	G	.	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr11	59172991	59172992	chr11:59172992:A:T	rs73476938	A	T	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr11	59284776	59284777	chr11:59284777:T:G	rs567277367	T	G	T	Sox3.mouse_HMG_1	14	1	+	2.3282667162573536	-4.098382535524643	CAACCACAAAATTGTTG
chr11	59284797	59284798	chr11:59284798:C:G	rs935495686	C	G	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr11	60156034	60156035	chr11:60156035:A:G	rs983392	A	G	.	Sox3.mouse_HMG_1	0	1	+	4.050783424690099	2.67796675922856	ATGCAATTTTATTGTAG
chr11	60285825	60285826	chr11:60285826:T:G	rs1025939574	T	G	t	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr11	60364690	60364691	chr11:60364691:G:A	rs7952244	G	A	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr11	60720017	60720018	chr11:60720018:C:T	rs117804628	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr11	61839695	61839696	chr11:61839696:A:G	rs174582	A	G	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr11	62052892	62052893	chr11:62052893:T:C	rs259889	T	C	C	Sox3.mouse_HMG_1	2	1	-	4.651107816617987	0.2431728376375254	TAACAATTATATATTTT
chr11	62165310	62165311	chr11:62165311:A:G	rs7946207	A	G	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr11	62198530	62198531	chr11:62198531:G:C	rs75849404	G	C	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr11	62385343	62385344	chr11:62385344:G:A	rs7115632	G	A	-	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr11	62393621	62393622	chr11:62393622:G:A	rs1008394580	G	A	g	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr11	62694744	62694745	chr11:62694745:T:A	rs181164682	T	A	T	Sox3.mouse_HMG_1	6	1	+	3.3082525097065187	-3.6002025243898914	AAAAAATTTTTTTGTTG
chr11	62694760	62694761	chr11:62694761:G:A	rs75335074	G	A	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr11	63572732	63572733	chr11:63572733:A:C	rs73490171	A	C	A	Sox3.mouse_HMG_1	13	1	-	5.433437299473534	11.80255691486907	AAATAATGAAATTTTTG
chr11	63588365	63588366	chr11:63588366:G:A	rs657959	G	A	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr11	63842892	63842893	chr11:63842893:A:G	rs2318126	A	G	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr11	64511164	64511165	chr11:64511165:G:A	rs2076853	G	A	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr11	64845559	64845560	chr11:64845560:T:C	rs35938015	T	C	t	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr11	65040612	65040613	chr11:65040613:C:T	rs1212333348	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr11	65638466	65638467	chr11:65638467:C:T	rs571339919	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr11	66226207	66226208	chr11:66226208:A:G	rs4930346	A	G	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr11	67978491	67978492	chr11:67978492:C:T	rs145291071	C	T	-	Sox3.mouse_HMG_1	11	1	+	3.180057373538763	9.237513482499114	AGACAATAATACTATTT
chr11	68287721	68287722	chr11:68287722:A:G	rs2175589	A	G	A	Sox3.mouse_HMG_1	4	1	+	6.526704146249742	-0.2856209457274942	AAACAATAACTTTTTTT
chr11	68343204	68343205	chr11:68343205:C:T	rs75696335	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr11	68472388	68472389	chr11:68472389:G:A	chr11:68472389:G:A	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr11	68655197	68655198	chr11:68655198:A:G	rs138341273	A	G	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr11	68685516	68685517	chr11:68685517:G:A	rs694066	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr11	68845733	68845734	chr11:68845734:T:C	rs2508848	T	C	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr11	68999410	68999411	chr11:68999411:A:G	rs72921102	A	G	G	Sox3.mouse_HMG_1	10	1	+	2.493028205162156	-4.415216953809186	GAAAATTTCTATTGTTT
chr11	69124356	69124357	chr11:69124357:T:C	rs57307280	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	69383218	69383219	chr11:69383219:T:A	rs12146485	T	A	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr11	69490802	69490803	chr11:69490803:C:T	rs56408035	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr11	69993210	69993211	chr11:69993211:C:G	rs4980708	C	G	C	Sox3.mouse_HMG_1	11	1	-	2.181034698464098	-1.7484427436353744	TATCAAGGGTAGTGTTT
chr11	70084312	70084313	chr11:70084313:C:G	rs2509126	C	G	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr11	70268566	70268567	chr11:70268567:G:A	rs56913804	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr11	70553721	70553722	chr11:70553722:A:G	rs184039597	A	G	A	Sox3.mouse_HMG_1	5	1	+	0.9147544864423881	-5.811378990860068	AGACAATGTCAGAGGTT
chr11	70740363	70740364	chr11:70740364:C:A	rs118132458	C	A	C	Sox3.mouse_HMG_1	0	1	-	1.4448847351365326	0.7945470752818261	GAACACATACAGTGTTT
chr11	70873791	70873792	chr11:70873792:A:G	rs17346526	A	G	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr11	71410827	71410828	chr11:71410828:A:C	rs111989006	A	C	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr11	71564705	71564706	chr11:71564706:C:T	rs113426908	C	T	C	Sox3.mouse_HMG_1	9	1	+	1.9677592192008253	1.9320530943162575	GGATAATGACATAGTTG
chr11	71787138	71787139	chr11:71787139:A:T	rs189407419	A	T	a	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr11	71809294	71809295	chr11:71809295:C:G	rs7113497	C	G	c	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr11	71809342	71809343	chr11:71809343:A:T	rs7129249	A	T	a	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr11	71890105	71890106	chr11:71890106:T:C	rs519098	T	C	-	Sox3.mouse_HMG_1	1	1	-	6.481077241930817	2.1536438985281268	AAACAATAGTACTATTT
chr11	72083634	72083635	chr11:72083635:C:T	rs577435	C	T	T	Sox3.mouse_HMG_1	9	1	+	4.829408741971334	4.793702617086765	AGATAATTACAGTGTTA
chr11	72255537	72255538	chr11:72255538:A:C	rs628542	A	C	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr11	72471562	72471563	chr11:72471563:G:A	rs75583049	G	A	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr11	72617851	72617852	chr11:72617852:C:A	rs117872855	C	A	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr11	72753363	72753364	chr11:72753364:T:C	rs898435283	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.156490003905678	-3.9534009113430293	TTACAAAGCCAGTGTTG
chr11	73190439	73190440	chr11:73190440:C:T	rs1783571	C	T	C	Sox3.mouse_HMG_1	3	1	+	0.9305340807722183	-5.052242037362103	GAACCATGGAAGGGTTT
chr11	73488017	73488018	chr11:73488018:G:A	rs3103926	G	A	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr11	74325707	74325708	chr11:74325708:C:T	rs634243	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr11	74443702	74443703	chr11:74443703:A:G	rs11824535	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr11	74443706	74443707	chr11:74443707:T:C	rs185383976	T	C	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr11	74480970	74480971	chr11:74480971:T:A	rs11826685	T	A	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr11	74565225	74565226	chr11:74565226:C:T	rs7116713	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr11	74687622	74687623	chr11:74687623:T:A	rs56154744	T	A	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr11	75132586	75132587	chr11:75132587:A:G	rs2851095	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr11	75381766	75381767	chr11:75381767:G:A	rs34113413	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr11	75812137	75812138	chr11:75812138:G:A	rs140967094	G	A	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr11	75896955	75896956	chr11:75896956:A:G	rs78981201	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr11	75896962	75896963	chr11:75896963:C:G	rs1009350419	C	G	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr11	76564658	76564659	chr11:76564659:T:C	rs12789493	T	C	C	Sox3.mouse_HMG_1	9	1	+	8.677262826841778	8.712968951726348	AAACAATTATAGTGGTA
chr11	76616152	76616153	chr11:76616153:G:T	rs141627703	G	T	G	Sox3.mouse_HMG_1	13	1	-	5.2253406380172915	5.2253406380172915	GAACAATAAGATTCTTG
chr11	76632291	76632292	chr11:76632292:T:C	rs1939465	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr11	76805432	76805433	chr11:76805433:A:G	rs116157282	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr11	76805435	76805436	chr11:76805436:G:A	rs880153	G	A	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr11	76863666	76863667	chr11:76863667:A:G	rs7942646	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr11	76903420	76903421	chr11:76903421:T:C	rs1025815	T	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr11	76975630	76975631	chr11:76975631:T:G	rs7121273	T	G	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr11	77003048	77003049	chr11:77003049:T:G	rs10793226	T	G	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr11	77243766	77243767	chr11:77243767:T:C	rs11237145	T	C	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr11	77724785	77724786	chr11:77724786:G:A	rs567814	G	A	G	Sox3.mouse_HMG_1	9	1	-	1.4676052728502231	1.4318991479656549	GATCAATGGCGGTGTTA
chr11	77993545	77993546	chr11:77993546:C:T	rs11237348	C	T	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr11	78028623	78028624	chr11:78028624:G:T	rs56085712	G	T	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr11	78028641	78028642	chr11:78028642:A:C	chr11:78028642:A:C	A	C	A	Sox3.mouse_HMG_1	5	1	+	3.9728480426693116	-2.8402968116227774	TGACAAGTATATTGTTA
chr11	78028666	78028667	chr11:78028667:A:G	rs10793272	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr11	78118248	78118249	chr11:78118249:T:C	rs7115416	T	C	C	Sox3.mouse_HMG_1	10	1	-	3.0185210828507705	-3.889724076120568	TAACTATGATAGTGATA
chr11	78332384	78332385	chr11:78332385:A:C	rs11601196	A	C	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr11	78700042	78700043	chr11:78700043:A:G	rs4280017	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr11	79018789	79018790	chr11:79018790:C:T	rs12785810	C	T	C	Sox3.mouse_HMG_1	7	1	-	1.7499947219089265	1.2539244021316156	AAAAAATGTCAGTGAAT
chr11	79089125	79089126	chr11:79089126:T:C	rs10793359	T	C	C	Sox3.mouse_HMG_1	12	1	+	1.1095563918781512	-5.0969091933397	AAACAATTACCTTGGGT
chr11	79982347	79982348	chr11:79982348:T:G	rs493589	T	G	T	Sox3.mouse_HMG_1	12	1	+	2.003754716626166	-4.564373354041456	AGACAATGGAATTCATT
chr11	80030870	80030871	chr11:80030871:C:T	rs1938874	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr11	80099186	80099187	chr11:80099187:C:A	rs140967147	C	A	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr11	80673655	80673656	chr11:80673656:A:G	rs4122080	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr11	80850123	80850124	chr11:80850124:T:C	rs11232367	T	C	t	Sox3.mouse_HMG_1	4	1	-	4.810745674045441	-2.001579417931797	AAGCAAGAAAAGTGTTT
chr11	81233157	81233158	chr11:81233158:A:G	rs12574178	A	G	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr11	81412193	81412194	chr11:81412194:T:C	rs17142194	T	C	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr11	81887423	81887424	chr11:81887424:G:A	rs2032409	G	A	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr11	81898627	81898628	chr11:81898628:C:T	rs7116275	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr11	81988254	81988255	chr11:81988255:C:A	rs35046031	C	A	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr11	82202273	82202274	chr11:82202274:G:C	rs12787306	G	C	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr11	82440053	82440054	chr11:82440054:G:A	rs79001486	G	A	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr11	82930321	82930322	chr11:82930322:G:C	rs10431162	G	C	G	Sox3.mouse_HMG_1	13	1	+	3.706583425785025	-2.4015223642408903	TAACATTTCCATTGTAA
chr11	83349800	83349801	chr11:83349801:A:T	chr11:83349801:A:T	A	T	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr11	83664136	83664137	chr11:83664137:A:T	rs12791719	A	T	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr11	83796385	83796386	chr11:83796386:C:T	rs3862777	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr11	83970410	83970411	chr11:83970411:G:A	rs2449593	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr11	83999444	83999445	chr11:83999445:C:T	rs1601091	C	T	C	Sox3.mouse_HMG_1	11	1	-	4.665026475680543	0.930549048634796	GGACAATGGCAGTGATA
chr11	84664697	84664698	chr11:84664698:T:C	rs1940065	T	C	T	Sox3.mouse_HMG_1	11	1	+	5.594969544393451	-0.4624865645669013	AAAAAATTGTATTGATT
chr11	85296092	85296093	chr11:85296093:T:C	rs186525400	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr11	85831438	85831439	chr11:85831439:A:C	rs1445500	A	C	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr11	86193550	86193551	chr11:86193551:T:A	rs188318188	T	A	-	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr11	86193551	86193552	chr11:86193552:A:T	rs59254413	A	T	-	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr11	86197703	86197704	chr11:86197704:T:C	chr11:86197704:T:C	T	C	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr11	86371278	86371279	chr11:86371279:A:C	chr11:86371279:A:C	A	C	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr11	86371278	86371279	chr11:86371279:A:G	rs11604281	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr11	86371279	86371280	chr11:86371280:T:C	rs292100	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr11	86519361	86519362	chr11:86519362:T:A	rs3889658	T	A	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr11	86525063	86525064	chr11:86525064:T:C	rs77710833	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr11	86597489	86597490	chr11:86597490:A:G	rs10792860	A	G	A	Sox3.mouse_HMG_1	2	1	+	2.1794715677936747	-2.2284634111867865	AAACACTAGAAGTCTTT
chr11	86641849	86641850	chr11:86641850:T:A	rs1938922	T	A	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr11	86699260	86699261	chr11:86699261:T:C	rs2513017	T	C	T	Sox3.mouse_HMG_1	7	1	-	3.155906334608048	3.651976654385358	GAACAATAATGGTATTT
chr11	86794557	86794558	chr11:86794558:C:G	rs1939116	C	G	C	Sox3.mouse_HMG_1	0	1	+	2.8833435763418365	3.100118423232497	CTACAATAATTTTGTAT
chr11	86919818	86919819	chr11:86919819:A:C	rs61903808	A	C	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr11	86940345	86940346	chr11:86940346:A:T	rs11234889	A	T	A	Sox3.mouse_HMG_1	16	1	-	3.7396460288595454	2.339962943381326	CTAAAATGCCAGTGTTT
chr11	86997247	86997248	chr11:86997248:C:A	rs4944652	C	A	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr11	86997585	86997586	chr11:86997586:T:C	rs12800615	T	C	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr11	87083497	87083498	chr11:87083498:G:A	rs17758984	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr11	87148084	87148085	chr11:87148085:A:G	rs144715854	A	G	A	Sox3.mouse_HMG_1	15	1	+	8.83367876394361	7.764103528130045	AAACAAAGACATTGTAG
chr11	87148099	87148100	chr11:87148100:T:C	rs533056	T	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr11	87239404	87239405	chr11:87239405:T:C	rs492373	T	C	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	87327026	87327027	chr11:87327027:A:G	rs12284055	A	G	A	Sox3.mouse_HMG_1	15	1	-	6.513071400232976	2.210569602437493	AAACAACATCAGTGTTC
chr11	87368105	87368106	chr11:87368106:A:T	rs2155331	A	T	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	87456702	87456703	chr11:87456703:A:C	rs12281894	A	C	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	88013852	88013853	chr11:88013853:C:G	rs2514251	C	G	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr11	88523635	88523636	chr11:88523636:C:A	rs1045484863	C	A	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr11	89147233	89147234	chr11:89147234:G:A	rs4519092	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr11	89220821	89220822	chr11:89220822:T:C	rs6483000	T	C	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr11	89334155	89334156	chr11:89334156:T:A	rs74395215	T	A	T	Sox3.mouse_HMG_1	11	1	+	2.683110376751553	-3.179345717155074	CAACAAAAAAATTCTTG
chr11	89544581	89544582	chr11:89544582:C:T	rs2164523	C	T	.	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr11	89613925	89613926	chr11:89613926:A:G	rs10501707	A	G	-	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr11	90455187	90455188	chr11:90455188:T:C	rs76870789	T	C	t	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr11	90804930	90804931	chr11:90804931:A:G	rs10741376	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr11	91186837	91186838	chr11:91186838:C:T	rs2514114	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr11	91218368	91218369	chr11:91218369:A:G	rs16915820	A	G	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr11	91259033	91259034	chr11:91259034:G:C	rs7117066	G	C	c	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr11	91514222	91514223	chr11:91514223:A:G	rs7935947	A	G	G	Sox3.mouse_HMG_1	12	1	-	6.557252290969	0.35078670575114856	AAACAAAGAAATTGATT
chr11	91686483	91686484	chr11:91686484:A:G	rs7118704	A	G	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr11	91905347	91905348	chr11:91905348:A:G	rs7951711	A	G	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr11	91947303	91947304	chr11:91947304:T:G	rs374687695	T	G	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr11	92288842	92288843	chr11:92288843:A:C	rs2608779	A	C	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr11	92302775	92302776	chr11:92302776:T:C	rs529059804	T	C	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr11	92376351	92376352	chr11:92376352:G:T	rs73548412	G	T	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr11	92410523	92410524	chr11:92410524:G:A	rs35228080	G	A	G	Sox3.mouse_HMG_1	3	1	-	6.0045976308672895	0.021821512732967507	CAACAAAGACATTGTCA
chr11	92713389	92713390	chr11:92713390:C:T	rs2676171	C	T	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr11	92738975	92738976	chr11:92738976:C:T	rs78102219	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr11	93370663	93370664	chr11:93370664:T:C	rs3020073	T	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr11	93657893	93657894	chr11:93657894:G:T	rs7930516	G	T	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr11	93657900	93657901	chr11:93657901:A:G	rs10831083	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr11	93728014	93728015	chr11:93728015:T:A	rs138515169	T	A	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr11	93986907	93986908	chr11:93986908:T:G	rs1441331489	T	G	T	Sox3.mouse_HMG_1	12	1	+	2.653418136833244	-3.9147099338343785	ACACAATTTTAGTGGTG
chr11	94398251	94398252	chr11:94398252:T:C	rs10831222	T	C	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr11	94478881	94478882	chr11:94478882:C:T	rs535801	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr11	94663137	94663138	chr11:94663138:C:G	rs7115977	C	G	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr11	94680576	94680577	chr11:94680577:A:C	rs585555	A	C	C	Sox3.mouse_HMG_1	16	1	-	4.41271325594176	3.446861615184648	AAATAATTATAGTCTTT
chr11	94814581	94814582	chr11:94814582:C:A	rs10501816	C	A	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr11	94889568	94889569	chr11:94889569:G:A	rs566217	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr11	95318884	95318885	chr11:95318885:C:T	rs547765557	C	T	C	Sox3.mouse_HMG_1	2	1	-	0.5345430519916239	4.942478030972087	CAGCAAGGGTATTGTCA
chr11	95455366	95455367	chr11:95455367:C:T	rs11602458	C	T	C	Sox3.mouse_HMG_1	3	1	+	2.8755625755091225	-3.107213542625198	GAACAATGCAAATCTTA
chr11	95549380	95549381	chr11:95549381:C:T	rs17705874	C	T	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr11	95600122	95600123	chr11:95600123:C:G	rs7109623	C	G	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr11	95600130	95600131	chr11:95600131:A:G	rs79249315	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr11	95661245	95661246	chr11:95661246:G:A	rs7946533	G	A	A	Sox3.mouse_HMG_1	3	1	-	8.612559226459469	2.6297831083251477	TAGCAATACTATTGTAT
chr11	95688353	95688354	chr11:95688354:C:T	rs16922406	C	T	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr11	95764006	95764007	chr11:95764007:C:T	rs1727149	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr11	95922691	95922692	chr11:95922692:A:C	rs16922701	A	C	A	Sox3.mouse_HMG_1	2	1	+	6.745788128522779	0.32045324880146797	CAACAATTATAGTGTGC
chr11	95937715	95937716	chr11:95937716:T:A	rs6483462	T	A	T	Sox3.mouse_HMG_1	4	1	-	3.3322346720907237	-2.982073754413099	AAACAATGTTAAAGTGT
chr11	96000181	96000182	chr11:96000182:T:C	rs725271	T	C	T	Sox3.mouse_HMG_1	5	1	-	3.4757860673091785	-3.2503474099932785	TGACAATTGTTTTGTTG
chr11	96102664	96102665	chr11:96102665:A:G	rs80213565	A	G	A	Sox3.mouse_HMG_1	5	1	+	8.318136449768259	1.5920029724658027	AAACAATATCATTCTAG
chr11	96102695	96102696	chr11:96102696:A:G	rs528903014	A	G	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr11	96142868	96142869	chr11:96142869:C:G	chr11:96142869:C:G	C	G	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr11	96200258	96200259	chr11:96200259:G:A	rs144560564	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr11	96263394	96263395	chr11:96263395:C:A	rs540660	C	A	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr11	96388690	96388691	chr11:96388691:C:T	rs11021568	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr11	96608059	96608060	chr11:96608060:G:A	rs3018648	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr11	96799391	96799392	chr11:96799392:G:A	rs72980859	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr11	98070742	98070743	chr11:98070743:A:G	rs35632231	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.0544469570087958	-3.6716865202936595	AGGCAATGATAGTGATG
chr11	98682585	98682586	chr11:98682586:G:T	rs2245944	G	T	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr11	98834857	98834858	chr11:98834858:C:T	rs7925701	C	T	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	99383875	99383876	chr11:99383876:G:T	rs74341429	G	T	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr11	99640869	99640870	chr11:99640870:T:C	rs617428	T	C	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr11	100010534	100010535	chr11:100010535:G:A	rs770568	G	A	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr11	100304636	100304637	chr11:100304637:T:C	rs7484006	T	C	c	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr11	100368082	100368083	chr11:100368083:T:G	rs2508275	T	G	c	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr11	100485190	100485191	chr11:100485191:T:A	rs1216513	T	A	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr11	101342661	101342662	chr11:101342662:G:A	rs117413115	G	A	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr11	101446039	101446040	chr11:101446040:A:G	rs562314384	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr11	101511209	101511210	chr11:101511210:T:G	rs7116629	T	G	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr11	101511293	101511294	chr11:101511294:G:A	rs7127243	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr11	101555645	101555646	chr11:101555646:A:G	rs150864738	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr11	101674661	101674662	chr11:101674662:C:A	rs4754788	C	A	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr11	102053758	102053759	chr11:102053759:C:T	rs7943720	C	T	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr11	102204149	102204150	chr11:102204150:G:A	rs7931576	G	A	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr11	102253445	102253446	chr11:102253446:A:G	rs73585870	A	G	A	Sox3.mouse_HMG_1	15	1	+	1.4376408589002825	0.3680656230867184	AAACAAGGAAGTTGTAT
chr11	102318831	102318832	chr11:102318832:A:G	rs17883897	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr11	102349131	102349132	chr11:102349132:T:G	rs11604189	T	G	g	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr11	102530901	102530902	chr11:102530902:G:A	rs11568819	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr11	102530929	102530930	chr11:102530930:T:C	rs11568818	T	C	T	Sox3.mouse_HMG_1	4	1	-	2.864972720742309	-3.9473523712349268	AGACAAATACATTGTGT
chr11	102553813	102553814	chr11:102553814:G:A	rs2186763	G	A	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr11	102593217	102593218	chr11:102593218:C:T	rs750263592	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr11	102593218	102593219	chr11:102593219:A:G	rs1784441	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr11	102806397	102806398	chr11:102806398:T:C	rs145541733	T	C	T	Sox3.mouse_HMG_1	11	1	+	4.801607868964105	-1.2558482399962474	AAACAATGGAATATTTG
chr11	102844316	102844317	chr11:102844317:T:C	rs522616	T	C	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr11	103290647	103290648	chr11:103290648:A:G	rs3847570	A	G	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr11	103429541	103429542	chr11:103429542:T:C	rs519773	T	C	t	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr11	103466049	103466050	chr11:103466050:A:G	rs313859	A	G	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr11	103588268	103588269	chr11:103588269:T:G	rs188225551	T	G	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr11	103608706	103608707	chr11:103608707:T:C	rs1481966	T	C	T	Sox3.mouse_HMG_1	14	1	+	3.1446615809496135	-2.9652293342990936	AAACAATTCAAATATTG
chr11	103632192	103632193	chr11:103632193:C:T	rs2122781	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr11	103843409	103843410	chr11:103843410:T:C	rs78818179	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr11	103899221	103899222	chr11:103899222:G:A	rs77932704	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr11	103980553	103980554	chr11:103980554:T:C	rs35788256	T	C	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr11	104111104	104111105	chr11:104111105:A:G	rs168636	A	G	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr11	104125935	104125936	chr11:104125936:T:C	rs361292	T	C	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr11	104161314	104161315	chr11:104161315:G:A	rs10895596	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr11	104462611	104462612	chr11:104462612:G:A	rs141162886	G	A	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr11	104514266	104514267	chr11:104514267:C:T	rs4755044	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr11	104526581	104526582	chr11:104526582:G:C	rs1487687	G	C	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr11	104707352	104707353	chr11:104707353:C:T	rs549766074	C	T	C	Sox3.mouse_HMG_1	12	1	+	3.8291795352774187	10.03564512049527	AAACCATATCAGCGTTT
chr11	104844572	104844573	chr11:104844573:A:G	rs890452	A	G	A	Sox3.mouse_HMG_1	11	1	-	3.8983194716034015	-2.1591366373569514	TAATAATAATATTTTTA
chr11	104916936	104916937	chr11:104916937:C:A	rs10466650	C	A	g	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr11	105055339	105055340	chr11:105055340:G:A	rs484345	G	A	.	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr11	105056900	105056901	chr11:105056901:G:A	rs521869	G	A	.	Sox3.mouse_HMG_1	11	1	+	3.4181305629404632	-0.31634686410528384	ACACAATATAAGTGATG
chr11	105227379	105227380	chr11:105227380:C:T	rs1449045	C	T	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr11	105542536	105542537	chr11:105542537:G:C	rs2513258	G	C	g	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr11	105553067	105553068	chr11:105553068:T:A	rs2513265	T	A	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr11	105556889	105556890	chr11:105556890:A:T	rs1942973	A	T	T	Sox3.mouse_HMG_1	2	1	+	7.660105326428866	1.7580185904721024	CTACAATGCTATTGTAA
chr11	105822413	105822414	chr11:105822414:T:A	rs17104596	T	A	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr11	105954234	105954235	chr11:105954235:C:T	rs73550981	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr11	106466394	106466395	chr11:106466395:G:T	rs11227059	G	T	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr11	106733072	106733073	chr11:106733073:C:T	rs1565161	C	T	c	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr11	106805538	106805539	chr11:106805539:C:G	rs114642868	C	G	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr11	106948830	106948831	chr11:106948831:A:G	rs721625	A	G	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr11	107043545	107043546	chr11:107043546:C:T	rs117624748	C	T	C	Sox3.mouse_HMG_1	13	1	-	1.3094018305371833	-4.798703959488733	GAATAAATACAGTGTTG
chr11	107439982	107439983	chr11:107439983:A:T	rs185669113	A	T	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr11	107439983	107439984	chr11:107439984:T:A	rs602625	T	A	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr11	107664897	107664898	chr11:107664898:G:C	rs477835	G	C	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr11	107780189	107780190	chr11:107780190:A:C	rs4754251	A	C	a	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr11	107856173	107856174	chr11:107856174:T:C	rs948223953	T	C	t	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr11	108093423	108093424	chr11:108093424:C:A	chr11:108093424:C:A	C	A	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr11	108486980	108486981	chr11:108486981:A:G	rs560820014	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr11	108824941	108824942	chr11:108824942:C:G	rs11828110	C	G	C	Sox3.mouse_HMG_1	11	1	-	6.822640379065829	2.8931629369663563	GAACATTTATAGTGTTA
chr11	109020045	109020046	chr11:109020046:A:G	rs11212860	A	G	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr11	109033823	109033824	chr11:109033824:G:A	rs1018227	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr11	109038842	109038843	chr11:109038843:G:A	rs71475116	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr11	109427176	109427177	chr11:109427177:C:T	rs117650464	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr11	109745813	109745814	chr11:109745814:T:C	rs2002733	T	C	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr11	109915464	109915465	chr11:109915465:T:G	rs6589095	T	G	G	Sox3.mouse_HMG_1	5	1	-	7.139262642822909	0.3261177885308237	CATCAATGGAAGTGTTG
chr11	110087099	110087100	chr11:110087100:G:A	rs10891052	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr11	110102514	110102515	chr11:110102515:A:C	rs11213263	A	C	A	Sox3.mouse_HMG_1	5	1	+	0.3338111288698534	-6.479333725422234	AAGCAAAGACAGTGGTT
chr11	110290786	110290787	chr11:110290787:A:G	rs7104283	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr11	111129588	111129589	chr11:111129589:C:A	rs12278151	C	A	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr11	111209800	111209801	chr11:111209801:C:T	rs1400760	C	T	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr11	111344422	111344423	chr11:111344423:T:C	rs11213842	T	C	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr11	111459521	111459522	chr11:111459522:C:G	rs58342953	C	G	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr11	111530883	111530884	chr11:111530884:G:A	rs11602450	G	A	G	Sox3.mouse_HMG_1	8	1	-	2.5843774190044213	2.8971166439149645	TAACAAAACTAGTGTAA
chr11	111554379	111554380	chr11:111554380:C:T	rs682239	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr11	111566170	111566171	chr11:111566171:T:A	rs659529	T	A	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr11	111635155	111635156	chr11:111635156:T:C	rs12791699	T	C	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr11	111646055	111646056	chr11:111646056:A:G	rs111888836	A	G	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr11	111759982	111759983	chr11:111759983:T:A	rs781839721	T	A	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	112200570	112200571	chr11:112200571:G:A	rs12420140	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr11	112249351	112249352	chr11:112249352:G:C	rs2564875	G	C	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr11	112605365	112605366	chr11:112605366:A:G	rs28435320	A	G	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr11	112617320	112617321	chr11:112617321:A:G	rs2513320	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr11	112649806	112649807	chr11:112649807:G:A	rs2513314	G	A	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr11	112778980	112778981	chr11:112778981:T:C	rs17114357	T	C	t	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	114027548	114027549	chr11:114027549:A:G	rs12282065	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr11	114134769	114134770	chr11:114134770:T:G	rs1810382	T	G	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr11	114154809	114154810	chr11:114154810:A:C	rs188314578	A	C	A	Sox3.mouse_HMG_1	1	1	+	2.096784523791289	-3.5410703724698207	AAACAATGTGATTGAGA
chr11	114163903	114163904	chr11:114163904:G:A	rs76675049	G	A	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr11	114399881	114399882	chr11:114399882:C:A	rs3741302	C	A	A	Sox3.mouse_HMG_1	8	1	-	0.6162456754656253	0.8228379120077282	CAGCAATCGTGTTGTTT
chr11	114557217	114557218	chr11:114557218:G:A	rs10502190	G	A	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr11	115082928	115082929	chr11:115082929:C:T	rs2513682	C	T	C	Sox3.mouse_HMG_1	3	1	+	4.170852448108389	-1.8119236700259336	AGACAAGTCCAGTGTTT
chr11	115199882	115199883	chr11:115199883:G:A	rs117253663	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr11	115225710	115225711	chr11:115225711:T:C	rs10891812	T	C	C	Sox3.mouse_HMG_1	6	1	-	0.8154508373778118	0.8154508373778118	AAAGAAAGGAAGTGTTG
chr11	115533433	115533434	chr11:115533434:T:C	rs1460913	T	C	C	Sox3.mouse_HMG_1	15	1	-	6.347544675081755	5.27796943926819	GAACAATGAAATGGTAG
chr11	115622851	115622852	chr11:115622852:A:G	rs146936541	A	G	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr11	115755011	115755012	chr11:115755012:A:C	rs73009817	A	C	C	Sox3.mouse_HMG_1	2	1	+	2.921198101980667	-3.5041367777406487	AAAAAAAAGCAGTGTTT
chr11	116210479	116210480	chr11:116210480:C:T	rs10891927	C	T	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr11	116379567	116379568	chr11:116379568:G:A	rs556727	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr11	116379571	116379572	chr11:116379572:T:G	rs76015458	T	G	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr11	116427649	116427650	chr11:116427650:A:C	rs490592	A	C	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr11	116427658	116427659	chr11:116427659:T:C	rs59287151	T	C	T	Sox3.mouse_HMG_1	10	1	-	5.019890392555731	-1.888354766415608	AAGCTATGACATTGTAG
chr11	116548395	116548396	chr11:116548396:C:T	rs76393448	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr11	116658923	116658924	chr11:116658924:T:G	rs524467	T	G	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr11	116679178	116679179	chr11:116679179:A:G	rs1787687	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr11	116832429	116832430	chr11:116832430:C:T	rs5130	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr11	116940058	116940059	chr11:116940059:T:C	rs79394589	T	C	T	Sox3.mouse_HMG_1	14	1	+	5.785530978055485	-0.32435993719322226	TAAGAATGGCATTGTAG
chr11	117023073	117023074	chr11:117023074:G:A	rs74691084	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr11	117098898	117098899	chr11:117098899:C:G	rs967787963	C	G	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr11	117161408	117161409	chr11:117161409:G:T	rs3736120	G	T	G	Sox3.mouse_HMG_1	3	1	-	1.858624741448643	-4.866088721415057	AAGCAATGACAGTATCA
chr11	117220436	117220437	chr11:117220437:C:G	rs61906489	C	G	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr11	117231483	117231484	chr11:117231484:G:A	rs61906491	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr11	118002473	118002474	chr11:118002474:T:G	rs180985032	T	G	T	Sox3.mouse_HMG_1	12	1	+	1.7373187795450318	-4.83080929112259	AAAGAAAAGTAGTGTTG
chr11	118241616	118241617	chr11:118241617:C:A	rs12419365	C	A	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr11	118245806	118245807	chr11:118245807:C:A	rs1614945	C	A	A	Sox3.mouse_HMG_1	3	1	+	1.5938670300489255	-5.130846432814773	AAACATTTACAATGTCT
chr11	118292990	118292991	chr11:118292991:T:C	rs75191264	T	C	T	Sox3.mouse_HMG_1	14	1	+	1.0504423166231311	-5.059448598625576	GTATAAGGACATTGTTT
chr11	118594099	118594100	chr11:118594100:G:C	rs11216921	G	C	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr11	119305788	119305789	chr11:119305789:T:C	rs3829261	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr11	119479221	119479222	chr11:119479222:C:T	rs609530	C	T	T	Sox3.mouse_HMG_1	8	1	+	4.741821258901919	5.0545604838124625	AAAAAATACTATTATTG
chr11	119879102	119879103	chr11:119879103:G:T	rs11217551	G	T	G	Sox3.mouse_HMG_1	8	1	+	5.297132760648544	5.503724997190647	AAACAACAGAATTGATT
chr11	119903087	119903088	chr11:119903088:T:C	rs117913812	T	C	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr11	119948079	119948080	chr11:119948080:A:T	rs895653	A	T	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr11	119971998	119971999	chr11:119971999:A:G	rs17123506	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr11	120028433	120028434	chr11:120028434:T:C	rs638948	T	C	C	Sox3.mouse_HMG_1	5	1	+	3.5722407403523118	3.6675509201566365	ATACATTTCTAGTGTTT
chr11	120460018	120460019	chr11:120460019:A:G	rs10892579	A	G	G	Sox3.mouse_HMG_1	5	1	+	4.141851382394657	-2.5842820949078025	GAATTATTTTATTGTTT
chr11	120710259	120710260	chr11:120710260:C:G	rs17124222	C	G	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr11	120932731	120932732	chr11:120932732:A:G	chr11:120932732:A:G	A	G	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr11	120991257	120991258	chr11:120991258:T:C	rs582800	T	C	T	Sox3.mouse_HMG_1	16	1	+	3.9832917880242045	0.38149512240322236	AAGCAATGAAACTGTCT
chr11	121341999	121342000	chr11:121342000:T:G	rs11218266	T	G	T	Sox3.mouse_HMG_1	10	1	-	2.5257297284266755	-4.038925726154586	ATAAAATAATATTGTGG
chr11	121405852	121405853	chr11:121405853:A:T	rs73007390	A	T	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr11	121459669	121459670	chr11:121459670:A:G	rs11218296	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr11	121665301	121665302	chr11:121665302:G:C	rs568599	G	C	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr11	121763899	121763900	chr11:121763900:T:G	rs4936651	T	G	g	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr11	121937272	121937273	chr11:121937273:A:G	rs7926019	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr11	121937315	121937316	chr11:121937316:G:A	rs1219451	G	A	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr11	121964593	121964594	chr11:121964594:C:G	rs12281773	C	G	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr11	122177787	122177788	chr11:122177788:A:G	rs483319	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr11	122334458	122334459	chr11:122334459:A:G	rs4936687	A	G	G	Sox3.mouse_HMG_1	1	1	-	3.3691689516757606	2.6216529816888507	ATGCAATGCTATTTTTT
chr11	122494913	122494914	chr11:122494914:A:G	chr11:122494914:A:G	A	G	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr11	122629186	122629187	chr11:122629187:A:G	rs11607161	A	G	A	Sox3.mouse_HMG_1	16	1	-	6.184016662376582	2.5822199967555997	TAACAATGGTATTTTGT
chr11	122629204	122629205	chr11:122629205:T:C	rs115741963	T	C	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr11	122738241	122738242	chr11:122738242:T:C	rs7111632	T	C	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr11	122738242	122738243	chr11:122738243:G:A	rs7126129	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr11	122852733	122852734	chr11:122852734:C:T	rs76038379	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr11	123115836	123115837	chr11:123115837:C:G	rs76262366	C	G	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr11	123130154	123130155	chr11:123130155:A:G	rs11219006	A	G	A	Sox3.mouse_HMG_1	2	1	+	1.9439110160871331	-2.4640239628933283	AAAGAAAATTAGTGTTG
chr11	123193652	123193653	chr11:123193653:A:C	rs4936784	A	C	C	Sox3.mouse_HMG_1	9	1	-	2.6519392204887406	-3.3489986611771227	AACCAATTATACTGTAT
chr11	123197655	123197656	chr11:123197656:C:A	rs145369941	C	A	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr11	123381755	123381756	chr11:123381756:T:C	rs377719767	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	123546689	123546690	chr11:123546690:T:G	rs73027953	T	G	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr11	123559266	123559267	chr11:123559267:G:A	rs702737	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr11	123559281	123559282	chr11:123559282:C:G	rs702736	C	G	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr11	123567409	123567410	chr11:123567410:A:C	rs850293	A	C	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr11	123681099	123681100	chr11:123681100:A:C	rs148087847	A	C	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr11	123681119	123681120	chr11:123681120:T:A	rs11219231	T	A	T	Sox3.mouse_HMG_1	12	1	+	1.6858796166700607	-3.9023124569630507	GAAAAATGGTAATGTAT
chr11	123838294	123838295	chr11:123838295:T:C	rs12272739	T	C	C	Sox3.mouse_HMG_1	1	1	-	1.2501206763967372	-3.0773126670059545	AAGCTATACTATGGTTT
chr11	123974122	123974123	chr11:123974123:T:G	rs112420319	T	G	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr11	124177364	124177365	chr11:124177365:C:T	rs4936905	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr11	124423736	124423737	chr11:124423737:A:G	rs10790676	A	G	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr11	124538319	124538320	chr11:124538320:T:C	rs7112283	T	C	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr11	124811782	124811783	chr11:124811783:A:C	rs594367	A	C	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr11	125339410	125339411	chr11:125339411:A:T	rs11220027	A	T	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr11	125339438	125339439	chr11:125339439:G:A	rs148128642	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr11	125564578	125564579	chr11:125564579:A:T	rs532524261	A	T	A	Sox3.mouse_HMG_1	9	1	-	1.0753203121025892	-0.3426179498419425	AAACAAACATCTTGTTT
chr11	125585664	125585665	chr11:125585665:T:C	rs111877163	T	C	T	Sox3.mouse_HMG_1	10	1	-	6.252943649463565	-0.655301509507773	CTGCAATACTATTGTTA
chr11	125720497	125720498	chr11:125720498:G:T	rs2000658	G	T	g	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr11	125978523	125978524	chr11:125978524:A:C	rs636641	A	C	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr11	125981159	125981160	chr11:125981160:A:G	rs564214	A	G	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr11	126072244	126072245	chr11:126072245:C:A	rs525316	C	A	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr11	126267958	126267959	chr11:126267959:G:A	rs7130615	G	A	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr11	126403240	126403241	chr11:126403241:G:A	rs993113607	G	A	G	Sox3.mouse_HMG_1	6	1	-	2.9189532675717005	9.56504403720062	AAACAGCGTCAGTGTTG
chr11	126410649	126410650	chr11:126410650:T:C	rs3781781	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr11	126634409	126634410	chr11:126634410:A:G	rs879164	A	G	A	Sox3.mouse_HMG_1	12	1	-	6.8622990911063155	0.6558335058884646	AAACTATGGTATTGTGA
chr11	126748552	126748553	chr11:126748553:A:G	rs73018561	A	G	A	Sox3.mouse_HMG_1	4	1	+	4.000594395891348	-2.8117306960858923	GACCATTAATATTGTTG
chr11	127805121	127805122	chr11:127805122:G:A	rs76299794	G	A	G	Sox3.mouse_HMG_1	2	1	+	1.3726981911445355	5.780633170124996	CAGAAATGACATTGCTT
chr11	127805153	127805154	chr11:127805154:T:A	rs10893754	T	A	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr11	127836504	127836505	chr11:127836505:T:C	rs12421672	T	C	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr11	128133941	128133942	chr11:128133942:C:T	rs1346110	C	T	C	Sox3.mouse_HMG_1	7	1	+	3.4167731098986724	7.49991614008129	TAAAAATCAAATTGTTG
chr11	128235532	128235533	chr11:128235533:A:C	rs73574997	A	C	A	Sox3.mouse_HMG_1	4	1	+	2.118212072361656	-4.607101642625951	GAACAATTTTTTTCTTA
chr11	128343227	128343228	chr11:128343228:A:T	rs146931870	A	T	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr11	128409678	128409679	chr11:128409679:C:T	rs113064913	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr11	128463979	128463980	chr11:128463980:G:A	rs74911684	G	A	G	Sox3.mouse_HMG_1	9	1	-	1.8209258896551552	1.7852197647705874	AAATAATGACTTAGTTT
chr11	128508870	128508871	chr11:128508871:T:G	rs35163142	T	G	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr11	128736612	128736613	chr11:128736613:C:T	rs3016776	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr11	129278075	129278076	chr11:129278076:T:C	rs11221633	T	C	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr11	129428216	129428217	chr11:129428217:A:G	rs12573893	A	G	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr11	129593164	129593165	chr11:129593165:C:T	rs10894076	C	T	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr11	129681497	129681498	chr11:129681498:A:G	rs11221802	A	G	a	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr11	129927373	129927374	chr11:129927374:A:G	rs10791058	A	G	G	Sox3.mouse_HMG_1	4	1	+	6.149055329743078	-0.6632697622341566	AACCAATACTATTGTGA
chr11	129959058	129959059	chr11:129959059:C:T	rs71481898	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr11	130014375	130014376	chr11:130014376:A:T	rs76259790	A	T	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr11	130014401	130014402	chr11:130014402:G:A	rs57794986	G	A	A	Sox3.mouse_HMG_1	11	1	+	2.901094574532422	-0.8333828525133259	TTAAAATTACAGTGTTT
chr11	130179998	130179999	chr11:130179999:C:T	rs766538515	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr11	130531411	130531412	chr11:130531412:G:A	rs3134450	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr11	130554290	130554291	chr11:130554291:G:C	rs1353075	G	C	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr11	130624452	130624453	chr11:130624453:C:G	rs73574020	C	G	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr11	130782057	130782058	chr11:130782058:G:A	rs73020912	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr11	130874871	130874872	chr11:130874872:T:G	rs11222370	T	G	T	Sox3.mouse_HMG_1	15	1	+	7.1202685488897135	2.553849691283678	AAACATTACAAGTGTTG
chr11	130894553	130894554	chr11:130894554:G:T	rs11222379	G	T	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr11	131002455	131002456	chr11:131002456:A:T	rs11222421	A	T	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr11	131002457	131002458	chr11:131002458:G:T	rs2324316	G	T	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr11	131041635	131041636	chr11:131041636:C:T	rs4937588	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr11	131041653	131041654	chr11:131041654:G:T	rs185703348	G	T	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr11	131074572	131074573	chr11:131074573:C:A	rs1540202	C	A	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr11	131511502	131511503	chr11:131511503:T:C	rs415448	T	C	T	Sox3.mouse_HMG_1	6	1	+	0.4986646010882262	-6.147426168540694	CAGCAATGCTAGTGCCT
chr11	131642122	131642123	chr11:131642123:G:T	rs76140786	G	T	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr11	131674718	131674719	chr11:131674719:C:T	rs789538	C	T	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr11	131680000	131680001	chr11:131680001:T:C	rs2739265	T	C	C	Sox3.mouse_HMG_1	6	1	+	3.3961246788593744	-3.2499660907695453	AAAGAATGATATTTTAT
chr11	131896654	131896655	chr11:131896655:A:T	rs372371527	A	T	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr11	131953772	131953773	chr11:131953773:T:A	rs12808320	T	A	T	Sox3.mouse_HMG_1	12	1	+	2.77934787058174	-2.8088442030513714	GAAAAAAGAAATTGTTG
chr11	132209263	132209264	chr11:132209264:T:C	rs6590630	T	C	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr11	132457384	132457385	chr11:132457385:C:A	rs2512714	C	A	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr11	132528237	132528238	chr11:132528238:A:G	rs2512705	A	G	A	Sox3.mouse_HMG_1	1	1	+	4.243356719888237	-0.08407662351445483	GATCAATATTATTTTTG
chr11	132528265	132528266	chr11:132528266:C:G	rs2512706	C	G	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr11	132644784	132644785	chr11:132644785:T:C	rs75586644	T	C	t	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr11	133062768	133062769	chr11:133062769:C:T	rs10894645	C	T	C	Sox3.mouse_HMG_1	11	1	-	3.267967280885682	-0.466510146160065	GATCAATGACAGGGTTG
chr11	133069704	133069705	chr11:133069705:G:A	rs58936969	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr11	133171741	133171742	chr11:133171742:C:T	rs4937755	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr11	133323436	133323437	chr11:133323437:C:T	rs7945328	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr11	133514180	133514181	chr11:133514181:T:C	rs11824805	T	C	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr11	133596815	133596816	chr11:133596816:A:G	rs61911481	A	G	G	Sox3.mouse_HMG_1	12	1	-	1.5300848514351433	-4.676380733782708	AAACAAACATATTGCTT
chr11	133816210	133816211	chr11:133816211:C:G	rs4936209	C	G	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr11	134150721	134150722	chr11:134150722:C:T	rs12289084	C	T	C	Sox3.mouse_HMG_1	3	1	+	5.676800448202797	-0.30597566993152503	GTACAATAACATTTTTA
chr11	134469737	134469738	chr11:134469738:T:C	rs7117021	T	C	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr11	134525740	134525741	chr11:134525741:T:G	rs7952453	T	G	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr11	134663927	134663928	chr11:134663928:C:T	rs11825865	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr11	134741070	134741071	chr11:134741071:C:T	rs60622467	C	T	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr11	135070357	135070358	chr11:135070358:C:G	rs11604294	C	G	.	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr12	49219	49220	chr12:49220:C:A	rs11061693	C	A	.	Sox3.mouse_HMG_1	3	1	-	2.5697073731758664	3.493966274699198	GAAGAATTCCATTGATA
chr12	101790	101791	chr12:101791:G:A	rs55675835	G	A	.	Sox3.mouse_HMG_1	11	1	+	0.9230043241951721	-2.8114731028505755	CAACAGTGTACGTGTTT
chr12	185076	185077	chr12:185077:C:A	rs57052808	C	A	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr12	402207	402208	chr12:402208:T:C	rs78985787	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr12	513962	513963	chr12:513963:A:G	rs35882350	A	G	a	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr12	810790	810791	chr12:810791:G:A	rs36092349	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr12	963798	963799	chr12:963799:C:T	rs6489769	C	T	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr12	995931	995932	chr12:995932:G:C	rs10849612	G	C	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr12	995938	995939	chr12:995939:G:A	rs10849613	G	A	G	Sox3.mouse_HMG_1	12	1	-	0.8651648104055762	7.071630395623427	AAACAATGACACCGCTG
chr12	1914319	1914320	chr12:1914320:C:G	rs16928921	C	G	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr12	1948425	1948426	chr12:1948426:A:G	rs2240610	A	G	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr12	1956203	1956204	chr12:1956204:T:C	rs2108638	T	C	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr12	2277781	2277782	chr12:2277782:C:T	rs10774036	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr12	2319034	2319035	chr12:2319035:A:G	rs16929248	A	G	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr12	2503074	2503075	chr12:2503075:G:C	rs2238086	G	C	G	Sox3.mouse_HMG_1	8	1	-	1.7589112711920358	1.865058259560476	TAACAACACAAGTGTGT
chr12	2661724	2661725	chr12:2661725:T:C	rs4765701	T	C	C	Sox3.mouse_HMG_1	11	1	-	1.7219243618352331	5.45640178888098	AAACAATGACAATTATG
chr12	2896679	2896680	chr12:2896680:G:T	rs10848724	G	T	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr12	3122776	3122777	chr12:3122777:T:C	rs7955810	T	C	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr12	3159071	3159072	chr12:3159072:A:G	rs4766053	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr12	3219244	3219245	chr12:3219245:T:C	rs73043504	T	C	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr12	3965098	3965099	chr12:3965099:T:C	rs73049317	T	C	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr12	3995966	3995967	chr12:3995967:A:G	rs12810273	A	G	A	Sox3.mouse_HMG_1	1	1	+	4.293416074645448	-0.03401726875724892	GAAAGATGATATTGTTG
chr12	3995972	3995973	chr12:3995973:G:A	rs12831976	G	A	G	Sox3.mouse_HMG_1	7	1	+	4.293416074645448	3.797345754868137	GAAAGATGATATTGTTG
chr12	4330436	4330437	chr12:4330437:T:C	rs11063085	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr12	4828423	4828424	chr12:4828424:C:T	rs2359468	C	T	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr12	4836848	4836849	chr12:4836849:T:C	rs7955352	T	C	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr12	4881524	4881525	chr12:4881525:G:A	rs12818113	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr12	5566605	5566606	chr12:5566606:G:A	rs79121802	G	A	G	Sox3.mouse_HMG_1	11	1	+	2.904058240286213	-0.830419186759534	AAGCAATGATAGTGGCT
chr12	5721997	5721998	chr12:5721998:G:A	rs4930797	G	A	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr12	5844674	5844675	chr12:5844675:T:A	rs185875765	T	A	T	Sox3.mouse_HMG_1	1	1	-	7.118753349729607	2.228414423455404	TAAAAATGATATTGTCT
chr12	5886411	5886412	chr12:5886412:G:T	rs7488901	G	T	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr12	6072468	6072469	chr12:6072469:G:A	rs55907031	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr12	6072486	6072487	chr12:6072487:C:T	rs185148953	C	T	C	Sox3.mouse_HMG_1	2	1	-	3.3307314506842896	7.738666429664752	ACGCAATGACAATGTTG
chr12	6171417	6171418	chr12:6171418:A:G	rs10744699	A	G	a	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr12	6371802	6371803	chr12:6371803:T:C	rs4764587	T	C	C	Sox3.mouse_HMG_1	5	1	-	13.810596522021092	7.084463044718639	AAACAATAATAATGTTT
chr12	6495938	6495939	chr12:6495939:C:A	rs7960757	C	A	A	Sox3.mouse_HMG_1	9	1	+	2.896766548101824	1.4431221612727243	AACCAATTCCTTTGTTA
chr12	7064315	7064316	chr12:7064316:C:T	rs7965055	C	T	C	Sox3.mouse_HMG_1	16	1	-	9.770406640929876	9.336575196208768	CACCAATGAAATTGTTG
chr12	7915766	7915767	chr12:7915767:T:C	rs117198832	T	C	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr12	8200105	8200106	chr12:8200106:A:G	rs11043930	A	G	a	Sox3.mouse_HMG_1	5	1	+	5.917074669690463	-0.8090588076119919	AAAAAATGCCAGTGTCT
chr12	8201143	8201144	chr12:8201144:G:C	rs4326876	G	C	g	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr12	8320359	8320360	chr12:8320360:T:C	rs116975627	T	C	.	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr12	8389019	8389020	chr12:8389020:T:C	rs149903928	T	C	.	Sox3.mouse_HMG_1	5	1	-	5.240416959856949	-1.485716517445506	TTACAATGGCAGTGTAA
chr12	8829048	8829049	chr12:8829049:C:G	rs4883181	C	G	C	Sox3.mouse_HMG_1	8	1	+	3.3891510898396953	3.4952980782081347	CAGCAATTCAAGTGTGT
chr12	8950651	8950652	chr12:8950652:G:T	rs1805754	G	T	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr12	8951068	8951069	chr12:8951069:T:G	rs933462	T	G	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr12	9164176	9164177	chr12:9164177:T:C	rs3213831	T	C	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr12	9283397	9283398	chr12:9283398:T:C	rs144736474	T	C	.	Sox3.mouse_HMG_1	11	1	+	2.8138616779703107	-3.2435944309900426	AGTCAATTATATAGTTT
chr12	9283407	9283408	chr12:9283408:A:G	rs76752207	A	G	.	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr12	9352415	9352416	chr12:9352416:G:C	rs144434316	G	C	g	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr12	9352416	9352417	chr12:9352417:G:C	rs12309329	G	C	g	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr12	10004225	10004226	chr12:10004226:A:T	rs7305223	A	T	a	Sox3.mouse_HMG_1	7	1	+	2.9341072501439474	1.8926284651791028	AGACAACATAAGTGTTA
chr12	10004252	10004253	chr12:10004253:C:T	rs7134681	C	T	t	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr12	10098129	10098130	chr12:10098130:G:A	rs7977902	G	A	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr12	10397741	10397742	chr12:10397742:A:T	rs1351112	A	T	a	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr12	10559022	10559023	chr12:10559023:C:T	rs4237928	C	T	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr12	10674053	10674054	chr12:10674054:C:T	rs17742565	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr12	11017175	11017176	chr12:11017176:G:A	rs73047121	G	A	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr12	11039396	11039397	chr12:11039397:T:A	rs72475496	T	A	t	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr12	11039447	11039448	chr12:11039448:C:T	rs72475497	C	T	c	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr12	11085704	11085705	chr12:11085705:C:T	rs35762060	C	T	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr12	11344919	11344920	chr12:11344920:T:C	rs7977399	T	C	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr12	11360244	11360245	chr12:11360245:T:A	rs61930112	T	A	t	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr12	11648274	11648275	chr12:11648275:C:A	rs2541137	C	A	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr12	11867235	11867236	chr12:11867236:C:T	rs7973930	C	T	c	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr12	12379996	12379997	chr12:12379997:C:T	rs117937426	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr12	12425851	12425852	chr12:12425852:G:A	rs4763825	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr12	12466301	12466302	chr12:12466302:G:A	rs56325045	G	A	g	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr12	12466302	12466303	chr12:12466303:C:T	rs56340010	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr12	12470856	12470857	chr12:12470857:C:T	rs2287204	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr12	12471151	12471152	chr12:12471152:A:G	rs141620164	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr12	12506592	12506593	chr12:12506593:A:G	rs180875014	A	G	A	Sox3.mouse_HMG_1	10	1	+	1.991834007120857	-4.9164111518504825	AAACAAAGTCATAGTAA
chr12	12518169	12518170	chr12:12518170:T:C	rs10845572	T	C	C	Sox3.mouse_HMG_1	11	1	+	0.6999051376851109	-5.357550971275241	AAACAAGAACATGGTGG
chr12	12749961	12749962	chr12:12749962:C:A	rs7302962	C	A	c	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr12	12945329	12945330	chr12:12945330:T:C	rs7138555	T	C	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr12	13174438	13174439	chr12:13174439:A:G	rs11055263	A	G	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr12	13190900	13190901	chr12:13190901:G:A	rs5010913	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr12	13204330	13204331	chr12:13204331:G:A	rs4597146	G	A	A	Sox3.mouse_HMG_1	11	1	+	1.660240846400749	-2.074236580644999	CAACAATAACAGTGGCC
chr12	13347961	13347962	chr12:13347962:G:A	rs7971776	G	A	g	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr12	13347990	13347991	chr12:13347991:A:T	rs73049083	A	T	A	Sox3.mouse_HMG_1	9	1	+	3.8050616825295442	5.222999944474076	TAAAAATAAAATTGTCA
chr12	13384903	13384904	chr12:13384904:C:T	rs4313665	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr12	13428669	13428670	chr12:13428670:T:C	rs1379511	T	C	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr12	13580794	13580795	chr12:13580795:A:G	rs731086	A	G	A	Sox3.mouse_HMG_1	6	1	-	5.219306091444167	-1.426784678184755	GAGAAATGGAATTGTTT
chr12	13666988	13666989	chr12:13666989:A:G	rs11615510	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr12	14239757	14239758	chr12:14239758:G:A	rs74839279	G	A	G	Sox3.mouse_HMG_1	3	1	-	2.626606139037515	-3.3561699790968076	CAACAGTGGCAGTATTT
chr12	14239778	14239779	chr12:14239779:C:T	chr12:14239779:C:T	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr12	14362769	14362770	chr12:14362770:C:T	rs7311765	C	T	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr12	14385430	14385431	chr12:14385431:A:G	rs73304252	A	G	A	Sox3.mouse_HMG_1	12	1	-	1.5810154972688442	-4.625450087949008	AAAAAATGAGAATGTTT
chr12	14418879	14418880	chr12:14418880:G:A	rs7967823	G	A	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr12	14838088	14838089	chr12:14838089:G:A	rs12307494	G	A	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr12	14858789	14858790	chr12:14858790:T:C	rs7971527	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr12	14876508	14876509	chr12:14876509:G:C	rs725444	G	C	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr12	15114637	15114638	chr12:15114638:G:A	rs374197279	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr12	15154609	15154610	chr12:15154610:A:G	rs141593123	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr12	15978227	15978228	chr12:15978228:A:G	rs79995902	A	G	a	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr12	15978229	15978230	chr12:15978230:G:A	rs750192945	G	A	g	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr12	16165568	16165569	chr12:16165569:C:T	rs116251404	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr12	16194373	16194374	chr12:16194374:G:A	rs3942536	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr12	16329605	16329606	chr12:16329606:A:G	rs34685194	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr12	17511663	17511664	chr12:17511664:A:G	rs590405	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr12	17878890	17878891	chr12:17878891:G:T	rs11519181	G	T	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr12	18166209	18166210	chr12:18166210:T:C	rs73065264	T	C	T	Sox3.mouse_HMG_1	7	1	-	8.481692179984492	8.977762499761804	GAAAAATAATAGTGTTG
chr12	18223817	18223818	chr12:18223818:T:C	rs12831587	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr12	18223841	18223842	chr12:18223842:T:C	rs11835887	T	C	T	Sox3.mouse_HMG_1	11	1	+	2.571684520202264	-3.485771588758089	AAGCAACACAATTGTAT
chr12	18250175	18250176	chr12:18250176:A:G	rs12832101	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr12	18703889	18703890	chr12:18703890:C:A	rs901528	C	A	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr12	19223245	19223246	chr12:19223246:A:G	rs111478504	A	G	A	Sox3.mouse_HMG_1	6	1	-	6.282446878714686	-0.3636438909142353	CAATTATGATATTGTTT
chr12	19235501	19235502	chr12:19235502:T:C	rs4430567	T	C	T	Sox3.mouse_HMG_1	2	1	-	1.6674833257213693	-2.7404516532590932	CCACATTGTAAGTGTTT
chr12	19261907	19261908	chr12:19261908:C:G	rs11044468	C	G	C	Sox3.mouse_HMG_1	11	1	-	3.977451562001911	0.04797411990244005	AAACAATTCTAGTAATT
chr12	19261930	19261931	chr12:19261931:T:C	rs7979972	T	C	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr12	19529828	19529829	chr12:19529829:A:G	rs117801984	A	G	A	Sox3.mouse_HMG_1	12	1	-	1.4634563123358957	-4.743009272881957	GAAAAAAATAATTGTTG
chr12	19529859	19529860	chr12:19529860:C:T	rs10770500	C	T	c	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr12	19842691	19842692	chr12:19842692:C:A	rs11044895	C	A	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr12	19846560	19846561	chr12:19846561:T:C	rs16922144	T	C	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr12	19915927	19915928	chr12:19915928:T:G	chr12:19915928:T:G	T	G	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr12	19998804	19998805	chr12:19998805:G:T	rs10841426	G	T	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr12	20018392	20018393	chr12:20018393:C:G	rs10743350	C	G	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr12	20235232	20235233	chr12:20235233:A:G	rs274989	A	G	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr12	20249232	20249233	chr12:20249233:A:G	rs61911303	A	G	A	Sox3.mouse_HMG_1	3	1	+	2.835933647882876	2.653612091088922	GAAAAATGCAATTGATA
chr12	20424016	20424017	chr12:20424017:G:A	rs77540872	G	A	g	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr12	20444551	20444552	chr12:20444552:A:G	rs10841528	A	G	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr12	20452281	20452282	chr12:20452282:A:G	rs10047560	A	G	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr12	20466168	20466169	chr12:20466169:A:G	rs145563533	A	G	A	Sox3.mouse_HMG_1	12	1	-	3.0816788626723715	-3.12478672254548	GAACAATTTCCATGTTG
chr12	20525424	20525425	chr12:20525425:T:C	rs12304514	T	C	T	Sox3.mouse_HMG_1	1	1	-	4.182062430217696	-0.1453709131849954	GAACAACAACATTATTA
chr12	20527422	20527423	chr12:20527423:A:G	rs7489188	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr12	20912430	20912431	chr12:20912431:C:A	rs10841706	C	A	C	Sox3.mouse_HMG_1	3	1	+	4.503877448346175	-2.2208360145175225	AAACAATTCTCGTGTCT
chr12	21305725	21305726	chr12:21305726:T:C	rs11838023	T	C	T	Sox3.mouse_HMG_1	5	1	-	7.411562836390372	0.6854293590879188	AAACAATGACATTAATA
chr12	22310998	22310999	chr12:22310999:G:A	rs12321356	G	A	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr12	24189358	24189359	chr12:24189359:G:A	rs12315618	G	A	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr12	24232681	24232682	chr12:24232682:A:G	rs2728841	A	G	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr12	24300518	24300519	chr12:24300519:G:A	rs565934	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr12	24309296	24309297	chr12:24309297:T:C	rs12425506	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr12	24591199	24591200	chr12:24591200:A:G	rs34103124	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr12	24617840	24617841	chr12:24617841:C:G	rs11047532	C	G	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr12	24707564	24707565	chr12:24707565:C:T	rs11047582	C	T	C	Sox3.mouse_HMG_1	15	1	-	5.782365138682813	6.851940374496378	AAACAATGTCGGTGTGT
chr12	24745850	24745851	chr12:24745851:T:C	rs12830440	T	C	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr12	24746038	24746039	chr12:24746039:T:C	rs34470100	T	C	T	Sox3.mouse_HMG_1	9	1	+	3.051557785329389	3.0872639102139567	AAAAAATAATAGTTTTA
chr12	24808157	24808158	chr12:24808158:C:T	rs7979563	C	T	C	Sox3.mouse_HMG_1	5	1	-	1.8868187292205447	8.612952206523	CAACAGGGACAGTGTTG
chr12	25276805	25276806	chr12:25276806:G:C	rs10743554	G	C	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr12	25276833	25276834	chr12:25276834:A:C	rs10743555	A	C	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr12	25276845	25276846	chr12:25276846:C:T	rs11047928	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr12	25327422	25327423	chr12:25327423:G:A	rs75972053	G	A	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr12	25327487	25327488	chr12:25327488:C:T	rs7970784	C	T	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr12	25853748	25853749	chr12:25853749:T:G	rs12306745	T	G	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr12	25853774	25853775	chr12:25853775:A:T	rs12313050	A	T	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr12	25888490	25888491	chr12:25888491:G:A	rs2054889	G	A	G	Sox3.mouse_HMG_1	8	1	-	2.519206315881213	2.831945540791755	GAACATTGCTAGTATTT
chr12	26092976	26092977	chr12:26092977:C:T	rs10505991	C	T	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr12	26096059	26096060	chr12:26096060:A:T	rs77015384	A	T	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr12	26330304	26330305	chr12:26330305:A:T	rs564475058	A	T	A	Sox3.mouse_HMG_1	15	1	-	3.9340255964879693	0.4371819746954986	TAATAATAACATTTTTA
chr12	26709536	26709537	chr12:26709537:T:C	rs11048666	T	C	T	Sox3.mouse_HMG_1	7	1	+	7.513208789584137	3.430065759401521	GAACAATTTAATTCTTA
chr12	26739131	26739132	chr12:26739132:G:A	chr12:26739132:G:A	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr12	26820771	26820772	chr12:26820772:C:T	rs182780779	C	T	C	Sox3.mouse_HMG_1	16	1	-	1.86737687714076	1.4335454324196528	ATACTATTCCATTGTAG
chr12	26827581	26827582	chr12:26827582:G:A	rs7315029	G	A	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr12	26990574	26990575	chr12:26990575:G:A	rs10771314	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr12	27049242	27049243	chr12:27049243:C:A	rs115041628	C	A	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr12	27185825	27185826	chr12:27185826:A:T	rs79919198	A	T	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr12	27207835	27207836	chr12:27207836:A:T	rs10842873	A	T	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr12	27246439	27246440	chr12:27246440:A:G	rs922274	A	G	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr12	27300477	27300478	chr12:27300478:A:G	rs35748160	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr12	27463655	27463656	chr12:27463656:G:A	rs11049019	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr12	27463694	27463695	chr12:27463695:T:C	rs182525892	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr12	27575979	27575980	chr12:27575980:T:C	rs549195640	T	C	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr12	27586044	27586045	chr12:27586045:T:C	rs16932216	T	C	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr12	27674611	27674612	chr12:27674612:G:A	rs10771355	G	A	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr12	27861552	27861553	chr12:27861553:A:C	rs258410	A	C	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr12	27865387	27865388	chr12:27865388:T:C	rs74069541	T	C	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr12	28189185	28189186	chr12:28189186:C:T	rs1478336	C	T	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr12	28507175	28507176	chr12:28507176:T:A	rs7955794	T	A	T	Sox3.mouse_HMG_1	4	1	-	1.041711396739827	-5.2725970297639995	GAACACTGGAAGTTTTT
chr12	28535618	28535619	chr12:28535619:T:C	rs12184491	T	C	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr12	28601924	28601925	chr12:28601925:G:A	rs10400418	G	A	G	Sox3.mouse_HMG_1	13	1	+	1.9481978763876655	-4.15990791363825	AAACAATGTCTCTGTGT
chr12	28772620	28772621	chr12:28772621:A:G	rs1038211	A	G	A	Sox3.mouse_HMG_1	1	1	+	1.5309693125435977	-2.7964640308590965	CAACAATATCCGTGCTG
chr12	28959042	28959043	chr12:28959043:T:C	rs7307323	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr12	29224655	29224656	chr12:29224656:G:A	rs7136407	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr12	29229038	29229039	chr12:29229039:C:G	rs10771502	C	G	G	Sox3.mouse_HMG_1	8	1	+	2.1369376985503306	2.243084686918771	CAACAATGCTTGTTTTT
chr12	29242247	29242248	chr12:29242248:G:C	rs7958210	G	C	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr12	29242261	29242262	chr12:29242262:A:G	rs16934061	A	G	A	Sox3.mouse_HMG_1	9	1	-	3.0681606105707093	3.103866735455279	TAACAATAATTTTTTTA
chr12	29242275	29242276	chr12:29242276:A:C	rs116052300	A	C	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr12	29591687	29591688	chr12:29591688:C:A	rs159700	C	A	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr12	29614901	29614902	chr12:29614902:A:G	rs12819780	A	G	A	Sox3.mouse_HMG_1	4	1	+	2.1830175015377113	-4.629307590439525	AGACATTGTCATTGTGA
chr12	30147338	30147339	chr12:30147339:G:A	rs2351209	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr12	30345958	30345959	chr12:30345959:T:C	rs11050844	T	C	C	Sox3.mouse_HMG_1	15	1	+	1.049416904445194	-3.2530848933502896	CAACAAGGAAAGTGCTG
chr12	30417602	30417603	chr12:30417603:T:C	rs7312790	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr12	30852494	30852495	chr12:30852495:G:A	rs33186	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr12	31026649	31026650	chr12:31026650:T:C	rs2287454	T	C	t	Sox3.mouse_HMG_1	5	1	-	4.842631645511376	-1.8835018317910805	GGACAATGCAATTGCTG
chr12	31123935	31123936	chr12:31123936:T:G	rs4931441	T	G	.	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr12	31175813	31175814	chr12:31175814:C:G	rs34016579	C	G	.	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr12	31205082	31205083	chr12:31205083:C:T	rs141633694	C	T	.	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr12	31205083	31205084	chr12:31205084:G:A	rs147072943	G	A	.	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr12	31219959	31219960	chr12:31219960:G:T	rs724417	G	T	.	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr12	31405096	31405097	chr12:31405097:C:G	rs2568896	C	G	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr12	31620352	31620353	chr12:31620353:A:G	rs11837587	A	G	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr12	31669657	31669658	chr12:31669658:G:A	rs75093514	G	A	.	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr12	31960268	31960269	chr12:31960269:G:A	rs183065215	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr12	31960550	31960551	chr12:31960551:A:G	rs61931389	A	G	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr12	31991921	31991922	chr12:31991922:C:A	rs4931593	C	A	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr12	32034888	32034889	chr12:32034889:A:G	rs11611851	A	G	-	Sox3.mouse_HMG_1	10	1	+	2.4160675829253253	-4.492177576046013	CTGCAATAATATTTTTT
chr12	32076882	32076883	chr12:32076883:G:A	rs17512639	G	A	g	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr12	32230585	32230586	chr12:32230586:A:G	rs2650145	A	G	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr12	32367012	32367013	chr12:32367013:C:T	rs325435	C	T	T	Sox3.mouse_HMG_1	9	1	+	1.6843612899445592	1.6486551650599897	AAACAATTACAAAGTGG
chr12	32413872	32413873	chr12:32413873:G:C	rs12425397	G	C	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr12	32549849	32549850	chr12:32549850:G:C	rs17538095	G	C	G	Sox3.mouse_HMG_1	3	1	-	2.444435315932214	-4.46259970372544	CAACATTGCTAGTGTGA
chr12	32549854	32549855	chr12:32549855:G:A	rs566100690	G	A	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr12	32801350	32801351	chr12:32801351:C:T	rs56798911	C	T	T	Sox3.mouse_HMG_1	7	1	-	1.17157612234245	0.6755058025651394	CTTCAATGGCAGTGTAT
chr12	32821310	32821311	chr12:32821311:C:T	rs10772008	C	T	C	Sox3.mouse_HMG_1	13	1	-	9.72365155502113	3.6155457649952134	AAATAATGATATTGTAG
chr12	33205721	33205722	chr12:33205722:A:G	rs11052524	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr12	33515153	33515154	chr12:33515154:T:C	rs78601210	T	C	T	Sox3.mouse_HMG_1	8	1	-	5.6293500945822466	4.6029366195716115	AAGCAATAATAGTCTTA
chr12	35390070	35390071	chr12:35390071:G:C	rs1285247525	G	C	.	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr12	35988407	35988408	chr12:35988408:G:C	rs1463606386	G	C	.	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr12	36042578	36042579	chr12:36042579:G:T	rs1167853133	G	T	.	Sox3.mouse_HMG_1	3	1	-	3.444878631241691	-3.2798348316220087	CCACAAAAACAGTGTTT
chr12	38302216	38302217	chr12:38302217:C:T	rs28437194	C	T	c	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr12	38556152	38556153	chr12:38556153:G:C	rs9805091	G	C	G	Sox3.mouse_HMG_1	13	1	+	5.772323365301524	-0.33578242472439157	AACCAATAAAACTGTTT
chr12	39067899	39067900	chr12:39067900:T:A	rs73262466	T	A	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr12	39227716	39227717	chr12:39227717:T:C	rs146507287	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr12	40147136	40147137	chr12:40147137:A:G	rs17442770	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr12	40223956	40223957	chr12:40223957:T:C	rs141560291	T	C	T	Sox3.mouse_HMG_1	10	1	-	1.9065191398695907	-5.001726019101747	TAGCAAGAACATTGTAG
chr12	40632190	40632191	chr12:40632191:A:C	rs7137846	A	C	A	Sox3.mouse_HMG_1	12	1	-	1.98653711604585	-4.581590954621772	TAGAAATAACATTGTGT
chr12	40854940	40854941	chr12:40854941:T:G	rs312271	T	G	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr12	40854952	40854953	chr12:40854953:G:A	rs76389286	G	A	G	Sox3.mouse_HMG_1	7	1	+	0.6505904913023081	0.1545201715249972	GAACAGTGGCAATGTGT
chr12	40972352	40972353	chr12:40972353:A:G	rs10879443	A	G	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr12	41356397	41356398	chr12:41356398:A:C	rs10880060	A	C	C	Sox3.mouse_HMG_1	3	1	+	4.132583217968608	10.857296680832308	TAAAAATAACAATGTTG
chr12	41441309	41441310	chr12:41441310:A:G	rs1551593	A	G	G	Sox3.mouse_HMG_1	14	1	-	3.178667294159002	-2.931223621089705	CAGCAGTGACATTGTCT
chr12	41646836	41646837	chr12:41646837:C:A	rs35770975	C	A	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr12	42118501	42118502	chr12:42118502:A:G	rs34152211	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr12	42119107	42119108	chr12:42119108:T:A	rs76585820	T	A	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr12	42333783	42333784	chr12:42333784:C:T	rs2406676	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr12	42333798	42333799	chr12:42333799:T:C	rs2406677	T	C	T	Sox3.mouse_HMG_1	4	1	+	2.0978898214488377	1.6868845329650575	AACCTATGTAAGTGTTG
chr12	42664112	42664113	chr12:42664113:T:G	rs17491346	T	G	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr12	42687414	42687415	chr12:42687415:G:T	rs10880348	G	T	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr12	42985554	42985555	chr12:42985555:T:C	rs117228757	T	C	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr12	43113268	43113269	chr12:43113269:T:C	rs1865617	T	C	C	Sox3.mouse_HMG_1	4	1	-	3.69687973945929	-3.1154453525179453	AAATAATTAAATGGTTG
chr12	43198059	43198060	chr12:43198060:C:A	rs10880433	C	A	C	Sox3.mouse_HMG_1	3	1	+	5.765892250932201	-0.9588212119314993	AGCCAATAGTAGTGTTT
chr12	43247967	43247968	chr12:43247968:T:A	rs12229015	T	A	T	Sox3.mouse_HMG_1	15	1	+	3.036886530340656	-0.45995709145181496	AAACAATGCATTTTTTA
chr12	43588069	43588070	chr12:43588070:A:G	rs74081931	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr12	43625540	43625541	chr12:43625541:T:A	rs73276609	T	A	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr12	43728374	43728375	chr12:43728375:T:C	rs918461546	T	C	T	Sox3.mouse_HMG_1	11	1	+	2.3097245107196236	-3.7477315982407298	AATCAATGATATATTTT
chr12	43728389	43728390	chr12:43728390:G:A	rs79595727	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr12	43809097	43809098	chr12:43809098:G:C	rs11182273	G	C	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr12	44054045	44054046	chr12:44054046:A:C	rs11182405	A	C	C	Sox3.mouse_HMG_1	10	1	+	3.6019745974886748	-2.962680857092588	GATCAAAGAAATTGTTG
chr12	44223888	44223889	chr12:44223889:C:T	rs7308476	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr12	44667948	44667949	chr12:44667949:G:A	rs12580824	G	A	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr12	44969022	44969023	chr12:44969023:G:C	rs10880718	G	C	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr12	45089445	45089446	chr12:45089446:C:A	rs2544109	C	A	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr12	45425975	45425976	chr12:45425976:T:A	rs11183027	T	A	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr12	45477848	45477849	chr12:45477849:A:C	rs2408255	A	C	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr12	45967347	45967348	chr12:45967348:A:T	rs117507015	A	T	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr12	46109034	46109035	chr12:46109035:C:G	rs12581275	C	G	C	Sox3.mouse_HMG_1	11	1	-	5.33147343430598	1.401995992206507	AAACCATGAAAGTGTGT
chr12	46109037	46109038	chr12:46109038:T:C	rs138003316	T	C	T	Sox3.mouse_HMG_1	8	1	-	5.33147343430598	4.3050599592953445	AAACCATGAAAGTGTGT
chr12	46134262	46134263	chr12:46134263:A:T	rs1550738	A	T	A	Sox3.mouse_HMG_1	4	1	+	6.947149541036976	0.6328411145331477	GATTAATGACATTGTTT
chr12	46153472	46153473	chr12:46153473:T:C	rs370988699	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr12	46153522	46153523	chr12:46153523:A:G	rs12299951	A	G	a	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr12	46208968	46208969	chr12:46208969:A:G	rs78363391	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr12	46215783	46215784	chr12:46215784:T:C	rs186046783	T	C	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr12	46359575	46359576	chr12:46359576:C:T	rs79548763	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr12	46368312	46368313	chr12:46368313:G:C	rs59371023	G	C	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr12	46382748	46382749	chr12:46382749:A:G	rs183960978	A	G	A	Sox3.mouse_HMG_1	5	1	+	6.337088575916969	-0.38904490138548475	AAACAATTTTGTTGTGT
chr12	46391092	46391093	chr12:46391093:C:G	rs74083758	C	G	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr12	46396072	46396073	chr12:46396073:G:A	rs7953450	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr12	46432403	46432404	chr12:46432404:A:G	rs4072304	A	G	G	Sox3.mouse_HMG_1	9	1	+	2.820447996934231	-1.7625516227871003	AAGAAATTCAAGTGTTT
chr12	46522424	46522425	chr12:46522425:C:T	rs766273094	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr12	46522464	46522465	chr12:46522465:A:G	rs143551100	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr12	46686510	46686511	chr12:46686511:A:C	rs188364434	A	C	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr12	46743889	46743890	chr12:46743890:T:C	rs56819961	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr12	46855813	46855814	chr12:46855814:T:G	rs115473473	T	G	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr12	46875477	46875478	chr12:46875478:T:C	rs74082953	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr12	46963325	46963326	chr12:46963326:G:A	rs2250464	G	A	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr12	47102554	47102555	chr12:47102555:G:A	rs2040674	G	A	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr12	47146072	47146073	chr12:47146073:C:G	rs12810420	C	G	C	Sox3.mouse_HMG_1	9	1	+	3.49454145386969	-2.542102552680741	CAACATTAACAGAGTTT
chr12	47269538	47269539	chr12:47269539:A:T	rs214727	A	T	T	Sox3.mouse_HMG_1	1	1	+	1.4761702269379922	-3.4141686993362104	AAGCAATGACTTTATTA
chr12	47340683	47340684	chr12:47340684:A:T	rs215349	A	T	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr12	47558086	47558087	chr12:47558087:C:A	rs12809915	C	A	c	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr12	48219702	48219703	chr12:48219703:G:A	rs535950426	G	A	G	Sox3.mouse_HMG_1	0	1	-	3.923467455999822	3.4899046430357754	CAACAATGTTTCTGTTG
chr12	48442051	48442052	chr12:48442052:C:G	rs17123011	C	G	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr12	49180239	49180240	chr12:49180240:A:C	rs7957998	A	C	c	Sox3.mouse_HMG_1	2	1	+	6.009577594871134	-0.4157572848501778	AAACAATTTCAGTATTC
chr12	49258863	49258864	chr12:49258864:T:C	rs7974890	T	C	C	Sox3.mouse_HMG_1	8	1	-	2.611290997503628	1.584877522492993	AGGCAAGAAAATTGTTT
chr12	49420062	49420063	chr12:49420063:A:G	rs11837194	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr12	49423127	49423128	chr12:49423128:T:C	rs59250459	T	C	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr12	49703508	49703509	chr12:49703509:T:C	chr12:49703509:T:C	T	C	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr12	49703547	49703548	chr12:49703548:A:G	rs11169117	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr12	50261851	50261852	chr12:50261852:T:C	rs116539721	T	C	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr12	50315005	50315006	chr12:50315006:G:A	rs913600824	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr12	51827842	51827843	chr12:51827843:C:T	rs61285885	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr12	52116935	52116936	chr12:52116936:G:A	rs73303211	G	A	G	Sox3.mouse_HMG_1	9	1	-	1.953440568837748	1.9177344439531785	AAACATTGACACTGATT
chr12	52282214	52282215	chr12:52282215:G:A	rs10876260	G	A	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr12	52286981	52286982	chr12:52286982:G:A	rs59448276	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr12	52287004	52287005	chr12:52287005:T:C	rs74095619	T	C	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr12	52305361	52305362	chr12:52305362:C:T	rs1238624628	C	T	C	Sox3.mouse_HMG_1	15	1	+	1.4271634936029234	5.7296652913984065	GTACGATGACATTGTCA
chr12	52349460	52349461	chr12:52349461:G:C	rs17656961	G	C	G	Sox3.mouse_HMG_1	11	1	-	2.943934371805134	6.873411813904606	GAACAAAAGCACTGTTA
chr12	52349483	52349484	chr12:52349484:A:T	rs1791645	A	T	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr12	52517066	52517067	chr12:52517067:A:G	rs60815939	A	G	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr12	52652602	52652603	chr12:52652603:A:T	rs640027	A	T	a	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr12	52829015	52829016	chr12:52829016:G:T	rs56360506	G	T	G	Sox3.mouse_HMG_1	9	1	-	1.966523280196539	0.5128788933674402	AGGCATTACCATTGTTG
chr12	52884272	52884273	chr12:52884273:T:C	rs957999921	T	C	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr12	53298251	53298252	chr12:53298252:G:T	rs140369962	G	T	G	Sox3.mouse_HMG_1	9	1	-	1.3938735263562543	-0.05977086047284608	AAACTAAGACATAGTTT
chr12	53327666	53327667	chr12:53327667:A:C	rs112778209	A	C	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr12	54059001	54059002	chr12:54059002:G:C	rs147122715	G	C	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr12	54280547	54280548	chr12:54280548:A:C	rs530476071	A	C	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr12	54636545	54636546	chr12:54636546:T:C	rs55906304	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr12	54647652	54647653	chr12:54647653:C:T	rs2029851	C	T	T	Sox3.mouse_HMG_1	13	1	-	2.5265704046496102	-3.5815353853763057	GAGCAATTACACTGTCT
chr12	54968371	54968372	chr12:54968372:C:T	rs10876674	C	T	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr12	54977886	54977887	chr12:54977887:C:T	rs2046686	C	T	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr12	55105392	55105393	chr12:55105393:T:C	rs9804942	T	C	t	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr12	55227559	55227560	chr12:55227560:A:G	rs115991636	A	G	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr12	55373283	55373284	chr12:55373284:T:C	rs10876753	T	C	-	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr12	55656392	55656393	chr12:55656393:C:A	rs4759183	C	A	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr12	55906353	55906354	chr12:55906354:T:C	rs77858935	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr12	55929174	55929175	chr12:55929175:C:T	rs115388761	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr12	56668440	56668441	chr12:56668441:A:G	rs2958123	A	G	A	Sox3.mouse_HMG_1	4	1	+	9.272641954376782	2.4603168623995453	AAACAAAAACAGTGTTA
chr12	56725043	56725044	chr12:56725044:G:A	chr12:56725044:G:A	G	A	g	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr12	56921606	56921607	chr12:56921607:C:A	rs1498749	C	A	A	Sox3.mouse_HMG_1	16	1	-	1.8520213213865362	2.8178729621436487	GAAAAATTATAGAGTTG
chr12	57011718	57011719	chr12:57011719:A:G	rs74808980	A	G	A	Sox3.mouse_HMG_1	6	1	-	1.8405154444010725	-4.805575325227847	GAAAAATGAAAGTGATA
chr12	57372608	57372609	chr12:57372609:G:C	rs4760254	G	C	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr12	57899787	57899788	chr12:57899788:A:T	rs34372362	A	T	A	Sox3.mouse_HMG_1	16	1	+	5.526906083510019	6.926589168988238	AAAAAATAACACTGTTA
chr12	58069916	58069917	chr12:58069917:T:A	rs4760366	T	A	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr12	58337343	58337344	chr12:58337344:A:G	rs139127958	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr12	58387293	58387294	chr12:58387294:G:A	rs150561609	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr12	58444872	58444873	chr12:58444873:C:G	rs1908535	C	G	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr12	58602971	58602972	chr12:58602972:A:T	rs7299125	A	T	T	Sox3.mouse_HMG_1	5	1	+	0.9869567114548029	-5.9214983226416065	CAGCAAGGGCATTGATT
chr12	59019020	59019021	chr12:59019021:G:A	rs7974440	G	A	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr12	59041758	59041759	chr12:59041759:A:G	rs139949018	A	G	A	Sox3.mouse_HMG_1	12	1	-	4.372741189583044	-1.8337243956348075	GGACAATAACAGTATTA
chr12	59041761	59041762	chr12:59041762:G:C	rs1838311	G	C	C	Sox3.mouse_HMG_1	9	1	-	4.372741189583044	-1.6639028169673862	GGACAATAACAGTATTA
chr12	59088964	59088965	chr12:59088965:A:T	rs186165719	A	T	A	Sox3.mouse_HMG_1	8	1	+	1.6828619169796926	0.8630406785111594	AAACAATGACCTATTTT
chr12	59835858	59835859	chr12:59835859:A:C	rs12298193	A	C	C	Sox3.mouse_HMG_1	2	1	+	1.911030046047863	-4.514304833673453	CAACAATGTCAGAGTGC
chr12	60149002	60149003	chr12:60149003:A:C	rs17665306	A	C	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr12	60264062	60264063	chr12:60264063:G:C	rs61923127	G	C	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr12	60310979	60310980	chr12:60310980:G:C	rs3901470	G	C	G	Sox3.mouse_HMG_1	13	1	+	3.4396918507566827	-2.668413939269233	GAACAATTAATTAGTTT
chr12	60489045	60489046	chr12:60489046:T:C	rs4622306	T	C	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr12	60710406	60710407	chr12:60710407:C:T	rs273836	C	T	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr12	60799101	60799102	chr12:60799102:G:A	rs12316933	G	A	G	Sox3.mouse_HMG_1	8	1	-	5.912484573661912	6.225223798572456	AAACATTGCCATTGATG
chr12	60873615	60873616	chr12:60873616:G:A	rs9919781	G	A	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr12	61167928	61167929	chr12:61167929:T:A	rs10877572	T	A	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr12	61552070	61552071	chr12:61552071:C:T	rs7979611	C	T	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr12	61890812	61890813	chr12:61890813:A:C	rs73129642	A	C	A	Sox3.mouse_HMG_1	10	1	+	2.385690136700311	-4.1789653178809525	AACCATTTTCAGTGTTT
chr12	62021791	62021792	chr12:62021792:A:T	rs17705406	A	T	T	Sox3.mouse_HMG_1	14	1	-	4.627632320753673	-0.6578450279414196	TAACTATTACATTGTCA
chr12	62117574	62117575	chr12:62117575:C:G	rs76185648	C	G	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr12	62131388	62131389	chr12:62131389:A:G	rs1245436	A	G	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr12	62701648	62701649	chr12:62701649:C:T	rs11174607	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr12	62720375	62720376	chr12:62720376:A:G	rs2270484	A	G	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr12	63097762	63097763	chr12:63097763:C:T	rs11174774	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr12	63349906	63349907	chr12:63349907:A:G	rs699623	A	G	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr12	63922767	63922768	chr12:63922768:G:A	rs61933129	G	A	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr12	64043227	64043228	chr12:64043228:G:A	rs11175239	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr12	64333050	64333051	chr12:64333051:G:A	rs1025355082	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr12	64404051	64404052	chr12:64404052:G:C	rs12306555	G	C	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr12	64758161	64758162	chr12:64758162:C:T	rs76114362	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr12	64758203	64758204	chr12:64758204:C:G	rs1038943	C	G	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr12	64911381	64911382	chr12:64911382:A:G	rs115799423	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr12	65443789	65443790	chr12:65443790:C:G	rs56160102	C	G	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr12	65570723	65570724	chr12:65570724:T:C	rs79573772	T	C	T	Sox3.mouse_HMG_1	1	1	-	4.6693855056247555	0.3419521622220628	TAACATTGATATGGTTT
chr12	65593477	65593478	chr12:65593478:G:A	rs148256983	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr12	65778990	65778991	chr12:65778991:G:C	rs2612065	G	C	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr12	65830490	65830491	chr12:65830491:T:C	chr12:65830491:T:C	T	C	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr12	65864455	65864456	chr12:65864456:C:G	rs1480475	C	G	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr12	65872786	65872787	chr12:65872787:A:G	rs7967707	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr12	66551014	66551015	chr12:66551015:T:C	rs12424551	T	C	T	Sox3.mouse_HMG_1	12	1	+	2.0032328957698167	-4.203232689448034	ATAAAATCACATTGTTG
chr12	66644359	66644360	chr12:66644360:T:C	rs10878484	T	C	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr12	66708889	66708890	chr12:66708890:T:A	chr12:66708890:T:A	T	A	T	Sox3.mouse_HMG_1	15	1	+	7.0752898574457985	3.5784462356533275	AAAAAATGATATTTTTT
chr12	66737025	66737026	chr12:66737026:C:T	rs974799	C	T	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr12	66901875	66901876	chr12:66901876:A:C	rs1504315	A	C	A	Sox3.mouse_HMG_1	15	1	+	5.481187240068241	4.675529064065229	CCACAATTGTATTGTAA
chr12	66901891	66901892	chr12:66901892:C:T	rs1504314	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr12	67388078	67388079	chr12:67388079:T:C	rs7955266	T	C	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr12	67601947	67601948	chr12:67601948:C:T	rs1797700	C	T	C	Sox3.mouse_HMG_1	13	1	-	4.656668479973458	-1.451437310052458	CAACAAAAACATAGTTG
chr12	67721182	67721183	chr12:67721183:T:C	rs72648176	T	C	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr12	67760729	67760730	chr12:67760730:G:A	rs12370196	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr12	67780833	67780834	chr12:67780834:A:G	rs142037021	A	G	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr12	67925880	67925881	chr12:67925881:A:G	rs17683624	A	G	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr12	68097647	68097648	chr12:68097648:A:G	rs140860929	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr12	68232947	68232948	chr12:68232948:T:C	rs1429175071	T	C	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr12	68351670	68351671	chr12:68351671:T:C	rs12828683	T	C	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr12	68379422	68379423	chr12:68379423:G:A	rs17105404	G	A	G	Sox3.mouse_HMG_1	0	1	+	5.859186242714304	7.232002908175844	GCACAATGACATTTTTG
chr12	68539240	68539241	chr12:68539241:G:A	rs753645919	G	A	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr12	68809743	68809744	chr12:68809744:T:A	rs1196335	T	A	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr12	68809773	68809774	chr12:68809774:T:G	rs3730498	T	G	T	Sox3.mouse_HMG_1	2	1	-	3.1348393096198564	-3.2904955701014567	GGACAATAACATAGATT
chr12	68919314	68919315	chr12:68919315:T:C	rs1965341	T	C	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr12	69096504	69096505	chr12:69096505:T:C	rs6581850	T	C	C	Sox3.mouse_HMG_1	14	1	+	2.1175542755717305	-3.992336639676977	AGGCAACTCTATTGTTT
chr12	69153305	69153306	chr12:69153306:G:A	rs9668470	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr12	69333409	69333410	chr12:69333410:G:A	rs317689	G	A	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr12	69435754	69435755	chr12:69435755:C:T	rs78912173	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr12	69435798	69435799	chr12:69435799:G:C	rs13377945	G	C	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr12	69676507	69676508	chr12:69676508:A:G	rs79185255	A	G	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr12	69676523	69676524	chr12:69676524:T:G	rs77141535	T	G	T	Sox3.mouse_HMG_1	15	1	-	1.876567439560416	1.0709092635574036	AACCATTAATATTGTAG
chr12	69802797	69802798	chr12:69802798:T:A	rs11177865	T	A	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr12	69822269	69822270	chr12:69822270:C:T	rs762893384	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr12	69898647	69898648	chr12:69898648:G:A	rs116556902	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr12	70557831	70557832	chr12:70557832:T:C	rs73140118	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr12	70812419	70812420	chr12:70812420:C:A	rs559112351	C	A	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr12	70826195	70826196	chr12:70826196:A:G	rs2458440	A	G	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr12	70880587	70880588	chr12:70880588:A:G	rs11609457	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr12	70888341	70888342	chr12:70888342:A:G	rs17108992	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr12	71007777	71007778	chr12:71007778:C:A	rs78043843	C	A	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr12	71142376	71142377	chr12:71142377:C:T	rs11178651	C	T	C	Sox3.mouse_HMG_1	13	1	-	1.8670737325657165	-4.2410320574602	AAACAAATTTGGTGTTT
chr12	71219091	71219092	chr12:71219092:T:C	rs1355371	T	C	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr12	71355056	71355057	chr12:71355057:G:A	rs5006248	G	A	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr12	71369738	71369739	chr12:71369739:T:G	rs34125145	T	G	t	Sox3.mouse_HMG_1	11	1	+	2.412140504360262	0.2841618374993825	AGACAGTGAAATTGATT
chr12	71725180	71725181	chr12:71725181:T:C	rs76373043	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr12	72606206	72606207	chr12:72606207:A:G	rs1864837	A	G	G	Sox3.mouse_HMG_1	6	1	-	2.2285657070880878	-4.4175250625408315	CAAAAATGACAGGGTTG
chr12	73640542	73640543	chr12:73640543:A:T	rs73177752	A	T	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr12	74332191	74332192	chr12:74332192:C:G	rs12299583	C	G	C	Sox3.mouse_HMG_1	15	1	+	2.772788059650315	2.5088709998397634	AAAAAATGATATTTTCT
chr12	74338130	74338131	chr12:74338131:C:G	rs187044336	C	G	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr12	74338133	74338134	chr12:74338134:T:C	rs2365724	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr12	74619392	74619393	chr12:74619393:C:A	rs2605353	C	A	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr12	75270265	75270266	chr12:75270266:C:T	rs11180435	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr12	75456051	75456052	chr12:75456052:C:T	rs947776909	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr12	75457997	75457998	chr12:75457998:T:A	rs7307352	T	A	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr12	75817090	75817091	chr12:75817091:G:C	rs112316541	G	C	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr12	75817092	75817093	chr12:75817093:T:C	rs80144910	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr12	75844993	75844994	chr12:75844994:G:A	rs771792974	G	A	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr12	75845002	75845003	chr12:75845003:A:T	rs34133638	A	T	A	Sox3.mouse_HMG_1	5	1	+	2.814035543534893	-4.0944194905615205	GAAACATGCTATTGTTA
chr12	75914157	75914158	chr12:75914158:T:G	rs115796365	T	G	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr12	76268391	76268392	chr12:76268392:A:G	rs7311600	A	G	g	Sox3.mouse_HMG_1	16	1	-	2.325329303318006	-1.2764673623029765	CATCAATATTGGTGTTT
chr12	76317096	76317097	chr12:76317097:A:G	rs940302	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr12	76343603	76343604	chr12:76343604:T:C	rs4761420	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr12	76346353	76346354	chr12:76346354:T:C	rs34737974	T	C	T	Sox3.mouse_HMG_1	5	1	-	3.9945558027977714	-2.7315776745046847	GAACAATTCCACTGCTT
chr12	76346368	76346369	chr12:76346369:G:A	rs35676114	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr12	76629037	76629038	chr12:76629038:A:T	rs10778798	A	T	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr12	76679976	76679977	chr12:76679977:A:G	rs12831592	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr12	76720059	76720060	chr12:76720060:A:T	chr12:76720060:A:T	A	T	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr12	76939656	76939657	chr12:76939657:T:C	rs12822710	T	C	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr12	77104716	77104717	chr12:77104717:A:G	rs12812493	A	G	A	Sox3.mouse_HMG_1	14	1	-	2.168040018346443	-3.941850896902264	AGACAATAAAACTGTCA
chr12	77116648	77116649	chr12:77116649:C:G	rs75853523	C	G	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr12	77202990	77202991	chr12:77202991:A:C	rs7956407	A	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr12	77229936	77229937	chr12:77229937:A:C	rs12833896	A	C	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr12	77377714	77377715	chr12:77377715:G:A	rs4017759	G	A	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr12	77377727	77377728	chr12:77377728:T:C	rs79841552	T	C	T	Sox3.mouse_HMG_1	12	1	+	4.294536196467879	-1.911929388749973	TAACAATTGCATTGGAA
chr12	77401286	77401287	chr12:77401287:C:T	rs12227679	C	T	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr12	77488226	77488227	chr12:77488227:T:G	rs1388210	T	G	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr12	77585069	77585070	chr12:77585070:A:G	rs696447	A	G	A	Sox3.mouse_HMG_1	6	1	-	2.602561279977059	-4.04352948965186	AAACAATGGCATAGACA
chr12	77625471	77625472	chr12:77625472:G:C	rs7307488	G	C	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr12	77932302	77932303	chr12:77932303:A:G	rs1242276	A	G	G	Sox3.mouse_HMG_1	14	1	-	2.4429621808934567	-3.6669287343552504	CAAGAGTTATATTGTTG
chr12	77932323	77932324	chr12:77932324:G:C	rs1242275	G	C	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr12	77957953	77957954	chr12:77957954:C:T	rs76828740	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr12	77957957	77957958	chr12:77957958:C:A	rs112817880	C	A	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr12	79196937	79196938	chr12:79196938:G:A	rs80080674	G	A	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr12	79409888	79409889	chr12:79409889:G:T	rs1526961	G	T	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr12	79886133	79886134	chr12:79886134:T:C	rs182441395	T	C	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr12	79988613	79988614	chr12:79988614:G:T	rs1203055091	G	T	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr12	80343912	80343913	chr12:80343913:G:A	rs17308724	G	A	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr12	80355611	80355612	chr12:80355612:A:T	rs6539501	A	T	A	Sox3.mouse_HMG_1	2	1	+	4.697943481307037	-1.2041432546497266	AAACAATAGACTTGTGA
chr12	80471300	80471301	chr12:80471301:T:C	rs73345980	T	C	T	Sox3.mouse_HMG_1	12	1	+	5.697711708772479	-0.5087538764453723	GAACAAAAACAGTGTTC
chr12	80709364	80709365	chr12:80709365:A:G	rs1047185	A	G	G	Sox3.mouse_HMG_1	14	1	-	1.5903544244612944	-4.519536490787414	AAAAAAAGAAAGTGTTA
chr12	80830393	80830394	chr12:80830394:A:G	rs12314666	A	G	G	Sox3.mouse_HMG_1	15	1	+	3.407581698028525	2.338006462214961	CACCAATGACATTGAAT
chr12	81137963	81137964	chr12:81137964:C:T	rs2525840	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr12	81137966	81137967	chr12:81137967:C:G	rs7980266	C	G	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr12	81702167	81702168	chr12:81702168:T:A	rs141137649	T	A	T	Sox3.mouse_HMG_1	2	1	+	1.1234242049571368	7.025510940913904	CATCAATGACACTGTGG
chr12	81910632	81910633	chr12:81910633:C:T	rs3943787	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr12	82395636	82395637	chr12:82395637:G:A	rs7954460	G	A	A	Sox3.mouse_HMG_1	11	1	+	2.024361093486201	-1.7101163335595462	GTACCATACTAGTGTTA
chr12	82596678	82596679	chr12:82596679:T:G	rs191068790	T	G	T	Sox3.mouse_HMG_1	2	1	-	3.042719275224721	-3.3826156044966	GAAGTATGCTATTGTTA
chr12	82797337	82797338	chr12:82797338:C:T	rs4565970	C	T	C	Sox3.mouse_HMG_1	14	1	-	1.6248496835156272	2.7660215866025326	TAACAATTGTCTTGGTG
chr12	82832486	82832487	chr12:82832487:C:T	rs117336817	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr12	82972744	82972745	chr12:82972745:G:A	rs142706697	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr12	83127682	83127683	chr12:83127683:T:A	rs59148775	T	A	T	Sox3.mouse_HMG_1	6	1	+	7.416952433470442	0.508497399374035	GAACAATGATTTTGTGT
chr12	83150840	83150841	chr12:83150841:G:A	rs1914518	G	A	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr12	83579864	83579865	chr12:83579865:G:A	rs398380	G	A	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr12	83808277	83808278	chr12:83808278:A:T	rs2061529	A	T	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr12	83985538	83985539	chr12:83985539:T:C	rs12822429	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr12	84290198	84290199	chr12:84290199:T:C	rs986802	T	C	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr12	84599659	84599660	chr12:84599660:G:A	rs11116485	G	A	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr12	84619258	84619259	chr12:84619259:T:C	rs147137842	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr12	84841997	84841998	chr12:84841998:T:C	rs6539865	T	C	T	Sox3.mouse_HMG_1	6	1	+	3.729109316941335	-2.916981452687583	CAACAATAAAAATCTTG
chr12	85383263	85383264	chr12:85383264:A:T	rs10400587	A	T	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr12	85775158	85775159	chr12:85775159:A:C	rs61930632	A	C	C	Sox3.mouse_HMG_1	11	1	-	3.06197286853169	0.9339942016708102	AAACAATAAAATACTAT
chr12	85922683	85922684	chr12:85922684:G:A	rs76153118	G	A	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr12	85968917	85968918	chr12:85968918:A:G	rs7961729	A	G	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr12	86081142	86081143	chr12:86081143:T:C	rs1502799	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr12	86097362	86097363	chr12:86097363:A:C	rs75526457	A	C	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr12	86926024	86926025	chr12:86926025:C:A	rs66811248	C	A	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr12	86926050	86926051	chr12:86926051:G:T	rs68140011	G	T	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr12	87085097	87085098	chr12:87085098:G:A	rs77186575	G	A	G	Sox3.mouse_HMG_1	0	1	+	3.4246444310883275	4.797461096549867	GTAAAATACTAGTGTTT
chr12	87124465	87124466	chr12:87124466:C:A	rs7964342	C	A	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr12	87678647	87678648	chr12:87678648:G:T	rs73199136	G	T	G	Sox3.mouse_HMG_1	9	1	-	5.042876240712098	3.5892318538829975	CTACAATGACAGAGTTG
chr12	87848037	87848038	chr12:87848038:T:C	rs10777066	T	C	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr12	87856436	87856437	chr12:87856437:G:A	rs12579007	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr12	88144857	88144858	chr12:88144858:T:C	rs2468223	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr12	88242560	88242561	chr12:88242561:A:T	rs149880728	A	T	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr12	88449106	88449107	chr12:88449107:T:C	rs143188656	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr12	88538468	88538469	chr12:88538469:C:T	rs11104938	C	T	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr12	89073421	89073422	chr12:89073422:T:C	rs4313629	T	C	C	Sox3.mouse_HMG_1	15	1	+	2.4414134851639617	-1.861088312631522	GAAAAATAAAAGAGTTT
chr12	89134167	89134168	chr12:89134168:C:T	rs71454146	C	T	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr12	89612264	89612265	chr12:89612265:T:C	rs575773009	T	C	T	Sox3.mouse_HMG_1	16	1	-	3.0153813499068347	3.449212794627942	AAACACTGATTGTGTTA
chr12	89646106	89646107	chr12:89646107:G:A	rs939329	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr12	89703889	89703890	chr12:89703890:G:C	rs10745511	G	C	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr12	90343043	90343044	chr12:90343044:G:C	rs11105575	G	C	G	Sox3.mouse_HMG_1	8	1	-	5.69545164065546	5.801598629023898	AAAGAATTCTATTGTAA
chr12	90983146	90983147	chr12:90983147:T:C	rs78072077	T	C	T	Sox3.mouse_HMG_1	10	1	-	3.222480738536077	-3.685764420435263	ATAAAATGTAAGTGTTG
chr12	91039950	91039951	chr12:91039951:A:T	rs12829632	A	T	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr12	91080644	91080645	chr12:91080645:C:T	rs991427	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr12	91103262	91103263	chr12:91103263:G:T	rs79752608	G	T	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr12	91172222	91172223	chr12:91172223:T:C	chr12:91172223:T:C	T	C	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr12	91381594	91381595	chr12:91381595:C:G	rs10506996	C	G	c	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr12	91524735	91524736	chr12:91524736:C:G	rs989525	C	G	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr12	91561572	91561573	chr12:91561573:T:G	chr12:91561573:T:G	T	G	t	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr12	91903127	91903128	chr12:91903128:G:C	rs4842795	G	C	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr12	91903144	91903145	chr12:91903145:C:T	rs55847141	C	T	C	Sox3.mouse_HMG_1	8	1	-	9.593511083407705	10.619924558418342	TAACAATGGAATTCTTT
chr12	91920353	91920354	chr12:91920354:T:C	rs73364952	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr12	92001084	92001085	chr12:92001085:C:G	rs12231344	C	G	c	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr12	92147248	92147249	chr12:92147249:G:A	rs7308806	G	A	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr12	92231423	92231424	chr12:92231424:A:G	rs73217638	A	G	G	Sox3.mouse_HMG_1	14	1	-	6.1630694608412195	0.05317854559251256	CAACAATGCAATTTTAT
chr12	92369258	92369259	chr12:92369259:T:C	rs450334	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.923833684362401	-4.802299792940055	ACACAAGGCTATTGTGT
chr12	92400090	92400091	chr12:92400091:G:A	rs10859312	G	A	G	Sox3.mouse_HMG_1	14	1	-	4.031948667322987	10.141839582571693	GAACAATTCAATTGCGT
chr12	92446697	92446698	chr12:92446698:G:T	rs337666	G	T	T	Sox3.mouse_HMG_1	15	1	+	1.1137918546017291	5.6802107122077645	AAACAAGGGTATAGTGG
chr12	92562265	92562266	chr12:92562266:A:G	rs11833273	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr12	92562267	92562268	chr12:92562268:G:A	rs11838034	G	A	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr12	92655912	92655913	chr12:92655913:T:C	rs10859354	T	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr12	92767379	92767380	chr12:92767380:T:C	rs10745621	T	C	T	Sox3.mouse_HMG_1	9	1	+	3.871319956970723	3.9070260818552915	GTACAATTATAGTTTTT
chr12	92898970	92898971	chr12:92898971:C:T	rs2251254	C	T	-	Sox3.mouse_HMG_1	14	1	-	3.9817387994266067	5.122910702513512	AAACAATGTTTGTGGTT
chr12	92953857	92953858	chr12:92953858:A:G	rs4418851	A	G	A	Sox3.mouse_HMG_1	5	1	+	5.209958927591487	-1.5161745497109673	AAACAATGGTGGTGTAA
chr12	93089797	93089798	chr12:93089798:C:T	rs56067629	C	T	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr12	93279759	93279760	chr12:93279760:G:C	rs6538404	G	C	G	Sox3.mouse_HMG_1	3	1	-	3.835454667946723	-3.071580351710928	GAACAATGGTATTAGTA
chr12	93288907	93288908	chr12:93288908:C:G	rs12422275	C	G	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr12	93426356	93426357	chr12:93426357:C:A	rs2291266	C	A	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr12	93578493	93578494	chr12:93578494:T:G	chr12:93578494:T:G	T	G	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr12	93593129	93593130	chr12:93593130:G:A	rs3887022	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr12	93700204	93700205	chr12:93700205:C:T	rs1003537579	C	T	C	Sox3.mouse_HMG_1	16	1	-	2.9256845583543076	2.4918531136332005	AAACCATGACATTGACG
chr12	93786925	93786926	chr12:93786926:A:G	rs12302839	A	G	a	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr12	93855609	93855610	chr12:93855610:A:G	rs6538456	A	G	G	Sox3.mouse_HMG_1	10	1	+	4.171682891925145	-2.7365622670461933	AAATAATAACACTGTAT
chr12	94031806	94031807	chr12:94031807:A:T	rs11107337	A	T	A	Sox3.mouse_HMG_1	4	1	+	4.874497418148392	-1.4398110083554352	AAACAGTCTTAGTGTTT
chr12	94124079	94124080	chr12:94124080:A:G	rs12309261	A	G	A	Sox3.mouse_HMG_1	4	1	+	1.4675537151515665	-5.34477137682567	AAAAAAAAGAAGTGTTT
chr12	94124081	94124082	chr12:94124082:A:G	rs12369480	A	G	A	Sox3.mouse_HMG_1	6	1	+	1.4675537151515665	1.4675537151515665	AAAAAAAAGAAGTGTTT
chr12	94489034	94489035	chr12:94489035:G:A	rs11107553	G	A	A	Sox3.mouse_HMG_1	6	1	-	1.6286088037343602	8.27469957336328	TAACACCGACAGTGTTG
chr12	94635450	94635451	chr12:94635451:C:T	rs6538523	C	T	T	Sox3.mouse_HMG_1	4	1	+	4.5923107672280645	5.003316055711845	GTACCATAACAGTGTTT
chr12	94649062	94649063	chr12:94649063:C:G	rs7975526	C	G	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr12	95095354	95095355	chr12:95095355:A:G	rs7358643	A	G	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr12	95119420	95119421	chr12:95119421:C:A	rs6538597	C	A	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr12	95169346	95169347	chr12:95169347:G:T	rs7978118	G	T	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr12	95410915	95410916	chr12:95410916:A:G	rs12814561	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr12	95569031	95569032	chr12:95569032:A:G	rs12423739	A	G	A	Sox3.mouse_HMG_1	2	1	+	2.058235570166129	-2.3496994088143324	CAACAATTCCTTTCTTG
chr12	95663346	95663347	chr12:95663347:A:G	rs10859921	A	G	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr12	95724020	95724021	chr12:95724021:G:A	rs11614560	G	A	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr12	95739608	95739609	chr12:95739609:A:G	rs10444524	A	G	G	Sox3.mouse_HMG_1	8	1	-	4.5347892010638295	4.222049976153287	CAGAAATGTCAGTGTTT
chr12	96006790	96006791	chr12:96006791:T:A	rs2540498	T	A	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr12	96046834	96046835	chr12:96046835:A:C	rs2660848	A	C	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr12	96172486	96172487	chr12:96172487:G:A	rs60628639	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr12	96214903	96214904	chr12:96214904:T:A	rs184217584	T	A	T	Sox3.mouse_HMG_1	12	1	+	1.9034202521418433	-3.6847718214912684	AGACAATGATAGTATCA
chr12	96236847	96236848	chr12:96236848:A:C	rs10777776	A	C	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr12	96427036	96427037	chr12:96427037:G:A	rs7956927	G	A	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr12	96437147	96437148	chr12:96437148:A:G	rs78062193	A	G	A	Sox3.mouse_HMG_1	10	1	+	1.4073197694938182	-5.500925389477521	AGAGAATGCCAGTGTCT
chr12	96786489	96786490	chr12:96786490:G:C	rs34463	G	C	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr12	96786531	96786532	chr12:96786532:T:C	rs34462	T	C	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr12	96932165	96932166	chr12:96932166:G:A	rs11836610	G	A	G	Sox3.mouse_HMG_1	8	1	-	6.669916365597762	6.982655590508304	CAGCAATGCTATTTTTT
chr12	97182737	97182738	chr12:97182738:A:G	rs759476	A	G	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr12	97417248	97417249	chr12:97417249:G:A	rs74239056	G	A	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr12	98110060	98110061	chr12:98110061:T:C	rs74487163	T	C	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr12	98225018	98225019	chr12:98225019:T:A	rs73376605	T	A	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr12	98233792	98233793	chr12:98233793:C:T	rs10735357	C	T	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr12	98753266	98753267	chr12:98753267:C:G	rs73149022	C	G	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr12	98888623	98888624	chr12:98888624:T:C	rs543956507	T	C	T	Sox3.mouse_HMG_1	4	1	-	2.6651972568119464	-4.147127835165288	GAACAAGTGCAGTGTGT
chr12	99515703	99515704	chr12:99515704:G:A	rs71462281	G	A	G	Sox3.mouse_HMG_1	7	1	-	0.3783074149472722	4.46145044512989	CAGCAATCCCATTGCTG
chr12	100225526	100225527	chr12:100225527:A:C	rs11110300	A	C	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr12	100225528	100225529	chr12:100225529:A:G	rs11110301	A	G	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr12	100995403	100995404	chr12:100995404:C:T	rs61944890	C	T	c	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr12	101616562	101616563	chr12:101616563:T:A	rs825086	T	A	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr12	101907240	101907241	chr12:101907241:G:A	rs61936567	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr12	102062363	102062364	chr12:102062364:T:G	rs3809259	T	G	T	Sox3.mouse_HMG_1	3	1	-	2.0665027039137702	8.791216166777469	CAAAAAAAAAATTGTTG
chr12	102584980	102584981	chr12:102584981:A:G	rs73173747	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr12	102692047	102692048	chr12:102692048:T:G	rs778019196	T	G	T	Sox3.mouse_HMG_1	10	1	-	0.7183886666893003	-5.846266787891961	AAACCATGGCAGTGCAT
chr12	103392736	103392737	chr12:103392737:G:A	rs2374045	G	A	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr12	103506659	103506660	chr12:103506660:T:G	rs73389800	T	G	T	Sox3.mouse_HMG_1	15	1	+	3.425189784005491	-1.1412290736005442	AGACAATGATAAAGTTG
chr12	103597366	103597367	chr12:103597367:C:G	rs703600	C	G	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr12	103629525	103629526	chr12:103629526:C:A	rs1018034	C	A	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr12	103667093	103667094	chr12:103667094:C:T	rs3752879	C	T	c	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr12	103814470	103814471	chr12:103814471:T:A	rs11611059	T	A	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr12	103908509	103908510	chr12:103908510:A:T	rs11111833	A	T	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr12	104001347	104001348	chr12:104001348:C:T	rs148375413	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr12	104516109	104516110	chr12:104516110:G:A	rs12425079	G	A	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr12	104544948	104544949	chr12:104544949:T:C	rs1795867	T	C	t	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr12	104700240	104700241	chr12:104700241:C:T	rs312140	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr12	104705230	104705231	chr12:104705231:G:A	rs835495	G	A	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr12	104998895	104998896	chr12:104998896:A:G	rs151332291	A	G	A	Sox3.mouse_HMG_1	4	1	+	1.2565140315953762	-5.555811060381861	CACCACTGGCAGTGTTG
chr12	105168259	105168260	chr12:105168260:T:C	rs1196872	T	C	T	Sox3.mouse_HMG_1	4	1	-	6.954396786815307	0.14207169483807036	TAACAATTAAAGTATTT
chr12	105229756	105229757	chr12:105229757:G:C	rs59593474	G	C	G	Sox3.mouse_HMG_1	12	1	-	1.1735687918966569	0.8119063064468859	AAACAAGGAAATCGTAG
chr12	105252330	105252331	chr12:105252331:G:A	rs2374448	G	A	A	Sox3.mouse_HMG_1	11	1	+	3.6425769002178328	-0.09190052682791439	CAAAAATAATAGAGTTT
chr12	105339182	105339183	chr12:105339183:G:T	rs74790841	G	T	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr12	105391554	105391555	chr12:105391555:G:A	rs1368253	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr12	105705738	105705739	chr12:105705739:C:T	rs55844653	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr12	105918954	105918955	chr12:105918955:T:C	rs7960880	T	C	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr12	105992981	105992982	chr12:105992982:C:G	rs2468210	C	G	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr12	106022504	106022505	chr12:106022505:G:A	rs17038009	G	A	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr12	106155115	106155116	chr12:106155116:G:A	rs73195614	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr12	106155156	106155157	chr12:106155157:C:T	rs11838184	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr12	106201567	106201568	chr12:106201568:A:G	rs1548155	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr12	106246064	106246065	chr12:106246065:T:G	chr12:106246065:T:G	T	G	T	Sox3.mouse_HMG_1	11	1	+	3.3036148441513413	1.1756361772904624	GAGCAATGACATAGTGG
chr12	106480341	106480342	chr12:106480342:G:T	rs574021543	G	T	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr12	106633763	106633764	chr12:106633764:T:C	rs180717204	T	C	t	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr12	106822503	106822504	chr12:106822504:A:T	rs73200054	A	T	A	Sox3.mouse_HMG_1	16	1	+	4.16776852532207	5.56745161080029	AAACAATCCAAGTGTCA
chr12	107277899	107277900	chr12:107277900:C:T	rs7133913	C	T	T	Sox3.mouse_HMG_1	11	1	-	2.0245560105426588	-1.7099214165030885	GAAGAATACTAGTATTT
chr12	107283768	107283769	chr12:107283769:A:C	rs1861691	A	C	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr12	107380166	107380167	chr12:107380167:A:C	rs10778551	A	C	C	Sox3.mouse_HMG_1	7	1	+	2.8136310991734694	-2.3109907159739933	AAACAGAACCAGTGTTT
chr12	107380177	107380178	chr12:107380178:C:T	rs550567802	C	T	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr12	107442128	107442129	chr12:107442129:C:G	rs7316860	C	G	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr12	107520801	107520802	chr12:107520802:G:A	rs11113367	G	A	G	Sox3.mouse_HMG_1	16	1	+	5.24928724001505	4.815455795293943	AAACAATGCCAGTGGCG
chr12	107520810	107520811	chr12:107520811:G:T	rs61938450	G	T	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr12	107765528	107765529	chr12:107765529:A:C	rs34156340	A	C	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr12	107857374	107857375	chr12:107857375:C:T	rs56253083	C	T	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr12	108304116	108304117	chr12:108304117:T:C	rs4964243	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr12	108560253	108560254	chr12:108560254:C:T	rs7967523	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr12	108618102	108618103	chr12:108618103:T:G	rs79713288	T	G	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr12	108622632	108622633	chr12:108622633:G:A	rs1005333468	G	A	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr12	108817254	108817255	chr12:108817255:T:C	rs12316621	T	C	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr12	109217348	109217349	chr12:109217349:T:G	rs2300453	T	G	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr12	109232978	109232979	chr12:109232979:A:G	rs78761086	A	G	a	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr12	109563389	109563390	chr12:109563390:A:G	rs736344	A	G	G	Sox3.mouse_HMG_1	0	1	+	0.9686045732902293	-0.4042120921713102	AAGCAGTGGCATTGCTG
chr12	109563409	109563410	chr12:109563410:G:A	rs736343	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr12	109618363	109618364	chr12:109618364:G:A	rs150285250	G	A	G	Sox3.mouse_HMG_1	3	1	-	3.268848848533715	-2.713927269600607	GAACAATCATTGTGTTG
chr12	109702583	109702584	chr12:109702584:T:C	rs1420746	T	C	T	Sox3.mouse_HMG_1	0	1	-	2.6178364296627983	1.2450197642012597	AAGCCATGCTATTGATT
chr12	109846659	109846660	chr12:109846660:T:C	rs7310287	T	C	t	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr12	110117012	110117013	chr12:110117013:A:G	rs67917264	A	G	G	Sox3.mouse_HMG_1	6	1	-	5.779391742027639	-0.8666990276012826	GAAGAATTGAAGTGTTT
chr12	110449563	110449564	chr12:110449564:A:G	rs78341143	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr12	110782003	110782004	chr12:110782004:C:A	rs11834902	C	A	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr12	110893332	110893333	chr12:110893333:C:T	rs74897448	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr12	110893351	110893352	chr12:110893352:T:A	rs11065751	T	A	T	Sox3.mouse_HMG_1	10	1	-	8.514687389426708	1.7017524102596935	CCACAATGACATTGTAG
chr12	110893360	110893361	chr12:110893361:G:A	rs11065752	G	A	A	Sox3.mouse_HMG_1	1	1	-	8.514687389426708	9.262203359413618	CCACAATGACATTGTAG
chr12	111413460	111413461	chr12:111413461:T:A	rs12297345	T	A	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr12	111429275	111429276	chr12:111429276:C:T	rs976741529	C	T	C	Sox3.mouse_HMG_1	0	1	-	1.0856887790403356	2.4585054445018746	GAACACTGGCTGTGTTG
chr12	111937503	111937504	chr12:111937504:T:G	rs2285695	T	G	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr12	112525341	112525342	chr12:112525342:G:A	rs11615234	G	A	G	Sox3.mouse_HMG_1	7	1	+	1.954081123515528	1.4580108037382171	AAGCAATGCTCTTGCTT
chr12	112597926	112597927	chr12:112597927:T:C	chr12:112597927:T:C	T	C	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr12	112976362	112976363	chr12:112976363:C:T	rs10850109	C	T	T	Sox3.mouse_HMG_1	2	1	-	2.4174270797832764	6.825362058763737	GAGCAAGAATATTGTGT
chr12	112997644	112997645	chr12:112997645:A:T	rs1293755	A	T	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr12	113215215	113215216	chr12:113215216:T:G	chr12:113215216:T:G	T	G	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr12	113782051	113782052	chr12:113782052:A:G	rs10850202	A	G	A	Sox3.mouse_HMG_1	2	1	+	5.042876240712098	0.6349412617316359	CTACAATGACAGAGTTG
chr12	113831180	113831181	chr12:113831181:C:T	rs116590798	C	T	C	Sox3.mouse_HMG_1	13	1	-	3.5474535110398184	-2.5606522789860966	AAACAATGGTTTTGAAT
chr12	114691510	114691511	chr12:114691511:A:G	rs10850364	A	G	A	Sox3.mouse_HMG_1	4	1	+	2.2044725724656145	-4.607852519511622	CAACAATGTGACTGTAT
chr12	114862200	114862201	chr12:114862201:G:A	rs2114667	G	A	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr12	114981264	114981265	chr12:114981265:A:G	rs2384503	A	G	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr12	115024166	115024167	chr12:115024167:A:G	rs960328625	A	G	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr12	115236123	115236124	chr12:115236124:C:G	rs11067489	C	G	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr12	115265830	115265831	chr12:115265831:T:G	rs61928230	T	G	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr12	115554948	115554949	chr12:115554949:T:G	rs1976344	T	G	G	Sox3.mouse_HMG_1	2	1	-	6.205461774631237	-0.21987310509007407	AAACAATGGTATGTTTT
chr12	115631802	115631803	chr12:115631803:T:C	rs17766714	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr12	115813430	115813431	chr12:115813431:C:T	rs697863	C	T	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr12	116368523	116368524	chr12:116368524:T:C	rs906058380	T	C	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr12	116550072	116550073	chr12:116550073:G:A	rs79408039	G	A	G	Sox3.mouse_HMG_1	3	1	-	1.522613996851584	-4.460162121282736	GAACAATTACAGGGCTG
chr12	116599643	116599644	chr12:116599644:A:C	rs560406386	A	C	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr12	116708987	116708988	chr12:116708988:A:G	rs546136255	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr12	117083374	117083375	chr12:117083375:A:G	rs10744890	A	G	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr12	117346746	117346747	chr12:117346747:G:A	rs535821972	G	A	A	Sox3.mouse_HMG_1	4	1	-	2.996772418282273	3.407777706766053	AAACCGTACCAGTGTTT
chr12	117485160	117485161	chr12:117485161:T:G	rs1093311	T	G	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr12	117533934	117533935	chr12:117533935:A:C	rs4767555	A	C	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr12	117679940	117679941	chr12:117679941:T:C	rs7294385	T	C	T	Sox3.mouse_HMG_1	6	1	+	2.235967774075995	-4.410122995552925	TGACAATAGCAGGGTTA
chr12	118135834	118135835	chr12:118135835:C:G	rs1021242395	C	G	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr12	118186185	118186186	chr12:118186186:A:C	rs17512142	A	C	A	Sox3.mouse_HMG_1	8	1	+	2.271863560489312	1.1393030971102367	GAACAATAATACTTTTC
chr12	118307809	118307810	chr12:118307810:T:G	chr12:118307810:T:G	T	G	T	Sox3.mouse_HMG_1	10	1	-	6.75216456622081	0.18750911163954787	TAACATTTTTAGTGTTT
chr12	119172571	119172572	chr12:119172572:C:G	rs722307	C	G	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr12	119180085	119180086	chr12:119180086:A:G	rs73412044	A	G	A	Sox3.mouse_HMG_1	8	1	+	15.26864451790439	14.242231042893755	GAACAATGATAGTGTTA
chr12	119247375	119247376	chr12:119247376:A:G	rs142135686	A	G	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr12	119434041	119434042	chr12:119434042:G:A	rs7306893	G	A	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr12	119671208	119671209	chr12:119671209:A:G	rs278143	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr12	120745366	120745367	chr12:120745367:C:T	rs73227016	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr12	121053851	121053852	chr12:121053852:A:C	rs1796404	A	C	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr12	121170781	121170782	chr12:121170782:A:T	rs12821688	A	T	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr12	121239862	121239863	chr12:121239863:C:T	rs142749471	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr12	121390959	121390960	chr12:121390960:T:C	rs10774593	T	C	C	Sox3.mouse_HMG_1	16	1	-	3.4312148077783675	3.8650462524994746	AAACAAGTTCATTCTTA
chr12	121390966	121390967	chr12:121390967:G:A	rs11065551	G	A	G	Sox3.mouse_HMG_1	9	1	-	3.4312148077783675	3.3955086828937997	AAACAAGTTCATTCTTA
chr12	121663711	121663712	chr12:121663712:A:G	rs2669174	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr12	121713658	121713659	chr12:121713659:C:T	rs143958465	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr12	121760610	121760611	chr12:121760611:G:A	rs57318156	G	A	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr12	122303170	122303171	chr12:122303171:A:G	rs12825149	A	G	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr12	122875603	122875604	chr12:122875604:G:A	rs6489245	G	A	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr12	123619031	123619032	chr12:123619032:G:T	rs66694750	G	T	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr12	123619912	123619913	chr12:123619913:C:G	rs7302183	C	G	G	Sox3.mouse_HMG_1	13	1	-	1.2781722280635035	-4.829933561962412	CAGCAATAGTGTTGTAG
chr12	123655049	123655050	chr12:123655050:A:G	rs4930737	A	G	A	Sox3.mouse_HMG_1	11	1	-	2.438492064406227	-3.618964044554126	AAAAAATGAAATTGACT
chr12	123713381	123713382	chr12:123713382:G:T	rs1426025950	G	T	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr12	123748859	123748860	chr12:123748860:T:C	rs138200834	T	C	T	Sox3.mouse_HMG_1	14	1	+	1.6279854496101067	-4.4819054656386	GAGCAGTAGAAGTGTTG
chr12	124237079	124237080	chr12:124237080:T:C	rs924425	T	C	T	Sox3.mouse_HMG_1	2	1	-	3.3720577654605	-1.0358772135199614	AAACCATTGTATTCTTA
chr12	124603661	124603662	chr12:124603662:C:G	rs7315502	C	G	c	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr12	124832844	124832845	chr12:124832845:C:A	rs10773107	C	A	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr12	125065030	125065031	chr12:125065031:A:G	rs10846817	A	G	G	Sox3.mouse_HMG_1	1	1	+	4.578845937202759	0.2514125938000674	GAACAAGAATTTTGTTT
chr12	125070915	125070916	chr12:125070916:G:A	rs879993	G	A	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr12	125070922	125070923	chr12:125070923:G:A	rs34094159	G	A	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr12	125074955	125074956	chr12:125074956:G:A	rs12227859	G	A	g	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr12	125530455	125530456	chr12:125530456:T:C	rs1205483	T	C	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr12	126421158	126421159	chr12:126421159:A:G	rs10744254	A	G	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr12	126524100	126524101	chr12:126524101:T:C	rs78150825	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr12	126808000	126808001	chr12:126808001:A:C	rs7967965	A	C	c	Sox3.mouse_HMG_1	8	1	+	7.189688250906032	6.057127787526957	AAAGAATGACATTCTTT
chr12	127088996	127088997	chr12:127088997:A:G	rs4435095	A	G	A	Sox3.mouse_HMG_1	14	1	-	4.754364457266592	-1.3555264579821145	TAACATTTAAAGTGTTA
chr12	127159741	127159742	chr12:127159742:T:C	rs11059004	T	C	T	Sox3.mouse_HMG_1	1	1	-	7.073772156717457	2.7463388133147637	TAAAAATGTTAGTGTTA
chr12	127606381	127606382	chr12:127606382:T:G	rs7955165	T	G	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr12	127667678	127667679	chr12:127667679:A:C	rs4761001	A	C	C	Sox3.mouse_HMG_1	4	1	+	2.5693948992025457	-4.1559188157850615	AAACACTGCAAGTCTTT
chr12	127770171	127770172	chr12:127770172:G:A	rs1493425	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr12	127809126	127809127	chr12:127809127:T:C	rs140317162	T	C	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr12	127810116	127810117	chr12:127810117:T:C	rs4237870	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr12	127810122	127810123	chr12:127810123:A:C	rs112242578	A	C	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr12	128339967	128339968	chr12:128339968:T:C	rs1621093	T	C	T	Sox3.mouse_HMG_1	10	1	-	4.663404014082151	-2.2448411448891883	AAACAGTTGCATTGATG
chr12	128449704	128449705	chr12:128449705:G:A	rs11059698	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr12	128540603	128540604	chr12:128540604:T:C	rs11059755	T	C	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr12	128722807	128722808	chr12:128722808:G:T	rs1077443	G	T	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr12	128727973	128727974	chr12:128727974:T:C	rs7485807	T	C	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr12	128813105	128813106	chr12:128813106:C:T	rs4760533	C	T	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr12	129862801	129862802	chr12:129862802:C:T	rs35831266	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr12	130105685	130105686	chr12:130105686:C:A	rs544578499	C	A	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr12	130220097	130220098	chr12:130220098:T:A	rs11614173	T	A	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr12	130719580	130719581	chr12:130719581:C:T	rs6486577	C	T	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr12	131459584	131459585	chr12:131459585:G:T	rs7138582	G	T	g	Sox3.mouse_HMG_1	7	1	+	2.3543469763220726	0.816797871579918	ACACAATGAAAATGTAA
chr12	131583730	131583731	chr12:131583731:A:G	rs11246874	A	G	A	Sox3.mouse_HMG_1	4	1	+	5.839731574416298	-0.9725935175609375	CACCAATGAAATTGTAA
chr12	131867582	131867583	chr12:131867583:T:C	rs11246859	T	C	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr12	131867590	131867591	chr12:131867591:C:A	rs10902464	C	A	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr12	132765794	132765795	chr12:132765795:C:T	rs9988972	C	T	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr12	132813053	132813054	chr12:132813054:T:C	rs75853986	T	C	T	Sox3.mouse_HMG_1	11	1	+	1.9122735644449838	-4.145182544515369	AACCAAAAACATTGTAG
chr12	132888571	132888572	chr12:132888572:C:G	rs11147146	C	G	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr12	132899178	132899179	chr12:132899179:G:A	rs11147152	G	A	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr12	132905913	132905914	chr12:132905914:T:A	rs75563723	T	A	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr13	16016653	16016654	chr13:16016654:A:G	rs942921475	A	G	.	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr13	16206850	16206851	chr13:16206851:C:T	rs1406738458	C	T	.	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr13	16237790	16237791	chr13:16237791:A:C	rs1026929836	A	C	.	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr13	18420713	18420714	chr13:18420714:C:T	rs1448783113	C	T	.	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr13	18870687	18870688	chr13:18870688:C:T	rs1838126	C	T	.	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr13	19178519	19178520	chr13:19178520:T:G	rs36215410	T	G	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr13	19696784	19696785	chr13:19696785:G:A	rs1023229	G	A	A	Sox3.mouse_HMG_1	5	1	+	5.833040688519075	12.55917416582153	AAACAGTTACATTATTT
chr13	20165688	20165689	chr13:20165689:A:T	rs9579792	A	T	A	Sox3.mouse_HMG_1	3	1	-	2.7552425512814294	2.013305206552052	GAATAATGCAATTCTTA
chr13	20332184	20332185	chr13:20332185:T:C	rs61951132	T	C	T	Sox3.mouse_HMG_1	6	1	+	5.197563224109156	-1.4485275455197633	AAACCATGAAAATGTTG
chr13	20380716	20380717	chr13:20380717:A:G	rs1887949	A	G	A	Sox3.mouse_HMG_1	14	1	-	7.869401163273457	1.7595102480247489	AAACAATAGAAATGTAT
chr13	20470497	20470498	chr13:20470498:G:A	rs7983250	G	A	A	Sox3.mouse_HMG_1	10	1	-	5.618401148511615	5.370121623925863	AAACAATGAACTGGTTT
chr13	21232858	21232859	chr13:21232859:T:C	rs9509610	T	C	t	Sox3.mouse_HMG_1	10	1	-	2.7767612453806483	-4.13148391359069	AAACAAAATCAGTGCTG
chr13	21333110	21333111	chr13:21333111:A:G	rs4085568	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr13	21333113	21333114	chr13:21333114:A:T	rs261726	A	T	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr13	21638597	21638598	chr13:21638598:G:A	rs111875232	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr13	21638602	21638603	chr13:21638603:G:A	rs117366557	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr13	22111535	22111536	chr13:22111536:A:T	rs115926653	A	T	A	Sox3.mouse_HMG_1	6	1	-	3.9009660527032635	-3.0074889813931485	CAGAAATGAAAGTGTTT
chr13	22388043	22388044	chr13:22388044:C:T	rs17076729	C	T	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr13	22451319	22451320	chr13:22451320:G:C	rs292470	G	C	G	Sox3.mouse_HMG_1	13	1	+	2.4154142543528363	-3.69269153567308	AGACAAAAACACTGTTT
chr13	22538584	22538585	chr13:22538585:A:T	rs4238158	A	T	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr13	23050789	23050790	chr13:23050790:A:G	rs7318605	A	G	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr13	23382068	23382069	chr13:23382069:T:C	rs117631859	T	C	T	Sox3.mouse_HMG_1	7	1	+	2.5960234568325458	-1.4871195733500713	GAACAATTATAGTAGTT
chr13	23450204	23450205	chr13:23450205:T:G	rs9510743	T	G	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr13	23482352	23482353	chr13:23482353:G:A	rs7982530	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr13	23795331	23795332	chr13:23795332:A:G	rs717776	A	G	A	Sox3.mouse_HMG_1	9	1	-	7.420616999070985	7.456323123955553	AAACAAATATATTGTCT
chr13	23833157	23833158	chr13:23833158:T:C	rs2312560	T	C	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr13	24039035	24039036	chr13:24039036:G:T	rs576989603	G	T	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr13	24042997	24042998	chr13:24042998:G:C	rs7999836	G	C	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr13	24045107	24045108	chr13:24045108:T:A	rs7997167	T	A	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr13	24219323	24219324	chr13:24219324:C:A	rs150481845	C	A	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr13	24233621	24233622	chr13:24233622:A:G	rs1220599	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr13	24512257	24512258	chr13:24512258:T:C	rs77522320	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr13	24697295	24697296	chr13:24697296:T:C	rs1160226	T	C	C	Sox3.mouse_HMG_1	1	1	+	4.511483045860504	3.7639670758735946	ATACCATAAAAGTGTTT
chr13	25180557	25180558	chr13:25180558:C:T	rs878205	C	T	C	Sox3.mouse_HMG_1	16	1	-	6.4440832477199095	6.010251802998802	GAACAATGGTACTGTCG
chr13	25200665	25200666	chr13:25200666:G:A	rs9507476	G	A	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr13	25215333	25215334	chr13:25215334:G:A	rs9511703	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr13	25518437	25518438	chr13:25518438:G:T	rs7324312	G	T	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr13	26221555	26221556	chr13:26221556:T:G	chr13:26221556:T:G	T	G	t	Sox3.mouse_HMG_1	2	1	-	5.515204988415143	-0.9101298913061706	GAACAGTGACAGTGTAG
chr13	26221567	26221568	chr13:26221568:C:T	rs149568510	C	T	c	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr13	26433981	26433982	chr13:26433982:A:G	rs651199	A	G	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr13	26458233	26458234	chr13:26458234:A:G	rs1547918	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr13	26796003	26796004	chr13:26796004:A:G	rs2182881	A	G	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr13	27375780	27375781	chr13:27375781:A:G	rs1047890116	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr13	27403539	27403540	chr13:27403540:C:T	rs554320365	C	T	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr13	28564118	28564119	chr13:28564119:T:C	rs7320190	T	C	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr13	28658017	28658018	chr13:28658018:A:G	rs1792057	A	G	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr13	29339148	29339149	chr13:29339149:T:G	rs9508374	T	G	G	Sox3.mouse_HMG_1	13	1	-	1.780545232957949	1.780545232957949	CAACAATGTCTGTATTG
chr13	29520705	29520706	chr13:29520706:A:T	rs78400268	A	T	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr13	29605868	29605869	chr13:29605869:T:C	rs7992839	T	C	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr13	29684747	29684748	chr13:29684748:T:C	rs1023163	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr13	29698507	29698508	chr13:29698508:T:C	rs67704126	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr13	29741266	29741267	chr13:29741267:A:C	rs912394	A	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr13	29771409	29771410	chr13:29771410:A:C	rs144035766	A	C	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr13	29793821	29793822	chr13:29793822:A:C	rs9506229	A	C	C	Sox3.mouse_HMG_1	14	1	-	4.090874479577243	-2.335774772204754	AAGAAATGAAAGTGTTA
chr13	29840805	29840806	chr13:29840806:A:G	rs2388246	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr13	29852626	29852627	chr13:29852627:T:G	rs80171055	T	G	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr13	30100154	30100155	chr13:30100155:C:T	rs78258405	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr13	30100172	30100173	chr13:30100173:A:G	rs4516061	A	G	A	Sox3.mouse_HMG_1	2	1	+	3.035346414853594	-1.3725885641268682	CAACAATCATATTGGAT
chr13	30172831	30172832	chr13:30172832:A:G	rs9314998	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.982769169102493	-1.074686939857859	GTATAATAGAATTGTTT
chr13	30389487	30389488	chr13:30389488:T:G	rs114474401	T	G	T	Sox3.mouse_HMG_1	2	1	-	2.787439671240933	-3.63789520848038	AAAAAATGGATTTGTTA
chr13	30673409	30673410	chr13:30673410:A:G	rs73458665	A	G	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr13	30697671	30697672	chr13:30697672:A:G	rs3000632	A	G	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr13	31050606	31050607	chr13:31050607:A:G	rs17537328	A	G	A	Sox3.mouse_HMG_1	7	1	+	2.3728372083538662	2.868907528131178	GTGCAATACCATTGTGG
chr13	31242472	31242473	chr13:31242473:C:T	rs7325675	C	T	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr13	31629790	31629791	chr13:31629791:C:A	rs56273238	C	A	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr13	31629803	31629804	chr13:31629804:T:C	rs7317196	T	C	T	Sox3.mouse_HMG_1	12	1	+	2.1318251543600577	-4.0746404308577935	CCACCATGGCAGTGTTG
chr13	32921121	32921122	chr13:32921122:C:G	rs17078111	C	G	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr13	33081272	33081273	chr13:33081273:T:C	rs143814941	T	C	T	Sox3.mouse_HMG_1	5	1	-	4.307660109779625	-2.4184733675228305	AAACAATAGATTTCTTT
chr13	33115883	33115884	chr13:33115884:A:G	rs9527088	A	G	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr13	33124584	33124585	chr13:33124585:A:G	rs538224	A	G	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr13	33283542	33283543	chr13:33283543:A:G	rs4445771	A	G	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr13	33601205	33601206	chr13:33601206:A:T	rs115530662	A	T	A	Sox3.mouse_HMG_1	11	1	-	6.431184091320346	0.568727997413719	AAACAAAAACATTTTTT
chr13	34699285	34699286	chr13:34699286:T:C	rs2292247	T	C	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr13	34735013	34735014	chr13:34735014:C:T	rs76581068	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr13	35164744	35164745	chr13:35164745:G:A	rs76006897	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr13	35483881	35483882	chr13:35483882:A:C	rs575463554	A	C	A	Sox3.mouse_HMG_1	2	1	+	1.4878238657275165	-4.9375110139938	CAAAAACACCAGTGTTT
chr13	35594364	35594365	chr13:35594365:C:T	rs150804124	C	T	C	Sox3.mouse_HMG_1	3	1	+	5.58442864265666	-0.3983474754776606	AGGCAATTTCAGTGTTA
chr13	35723840	35723841	chr13:35723841:C:T	rs9593405	C	T	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr13	35979423	35979424	chr13:35979424:A:C	chr13:35979424:A:C	A	C	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr13	36610926	36610927	chr13:36610927:T:A	rs4943398	T	A	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr13	37457766	37457767	chr13:37457767:T:C	rs61947270	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr13	37465934	37465935	chr13:37465935:A:G	rs17055728	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.3754860698512923	-3.2706046997776257	GAAAAATGATAGGGTTT
chr13	37476276	37476277	chr13:37476277:T:C	rs7329107	T	C	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr13	38349945	38349946	chr13:38349946:A:T	rs2231330	A	T	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr13	38742915	38742916	chr13:38742916:G:A	rs2442356	G	A	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr13	39158692	39158693	chr13:39158693:A:G	rs4143185	A	G	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr13	39263428	39263429	chr13:39263429:T:C	rs1930813	T	C	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr13	39285037	39285038	chr13:39285038:C:T	rs111783153	C	T	C	Sox3.mouse_HMG_1	10	1	+	1.8653145960175943	1.6170350714318424	AAAAAATAGCCGTGTTA
chr13	39318472	39318473	chr13:39318473:T:A	rs8000195	T	A	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr13	40183633	40183634	chr13:40183634:A:T	rs9549095	A	T	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr13	40223592	40223593	chr13:40223593:A:G	rs7333183	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr13	41075235	41075236	chr13:41075236:A:G	rs1021053145	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr13	41325266	41325267	chr13:41325267:A:G	rs28501271	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr13	41568455	41568456	chr13:41568456:C:T	rs9594576	C	T	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr13	41834156	41834157	chr13:41834157:A:G	rs7327866	A	G	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr13	41855688	41855689	chr13:41855689:C:G	rs11617451	C	G	C	Sox3.mouse_HMG_1	3	1	+	5.841702833570935	-1.0653321860867175	GAACAAGGGAATTGTTC
chr13	42002001	42002002	chr13:42002002:A:G	rs61963154	A	G	A	Sox3.mouse_HMG_1	6	1	-	2.643730159695009	-4.002360609933911	GAGCCATAGTATTGTAT
chr13	42066204	42066205	chr13:42066205:A:G	rs6561033	A	G	A	Sox3.mouse_HMG_1	7	1	+	11.156451947519857	11.652522267297167	AAACAATACAATTGTGA
chr13	42395062	42395063	chr13:42395063:G:A	rs71428876	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr13	42395069	42395070	chr13:42395070:G:A	rs34815820	G	A	G	Sox3.mouse_HMG_1	0	1	+	1.0794198778541748	2.4522365433157147	GAAGCATGGCAGTGTTG
chr13	42395089	42395090	chr13:42395090:T:C	rs138336141	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr13	42524191	42524192	chr13:42524192:A:G	rs4942139	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr13	42524210	42524211	chr13:42524211:A:G	rs4941432	A	G	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr13	42949964	42949965	chr13:42949965:G:C	rs7989235	G	C	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr13	43003563	43003564	chr13:43003564:G:C	rs33926053	G	C	G	Sox3.mouse_HMG_1	13	1	+	4.281517000036436	-1.8265887899894797	CAACACTAACAGTGTAA
chr13	43049293	43049294	chr13:43049294:A:G	rs17064072	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr13	43055414	43055415	chr13:43055415:C:T	rs188464524	C	T	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr13	43233079	43233080	chr13:43233080:G:T	rs75559699	G	T	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr13	43545321	43545322	chr13:43545322:A:T	rs9533521	A	T	A	Sox3.mouse_HMG_1	4	1	+	5.166794318636816	-1.147514107867011	AGAAAATGCAATTGTTA
chr13	43788089	43788090	chr13:43788090:T:C	rs77634831	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr13	43801193	43801194	chr13:43801194:G:A	rs1888302	G	A	A	Sox3.mouse_HMG_1	10	1	-	2.7868427088896452	2.5385631843038934	GAACAATATGCGTGTTT
chr13	44159810	44159811	chr13:44159811:T:C	rs17065471	T	C	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr13	44304475	44304476	chr13:44304476:T:G	rs1175215	T	G	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr13	44464625	44464626	chr13:44464626:T:G	rs77902003	T	G	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr13	44541182	44541183	chr13:44541183:C:T	rs12184878	C	T	C	Sox3.mouse_HMG_1	2	1	+	3.887533116557897	4.410781260322445	AACCAAAGTTAGTGTTT
chr13	44649734	44649735	chr13:44649735:T:A	rs9595168	T	A	C	Sox3.mouse_HMG_1	14	1	+	3.1177628426742308	-2.167714506020861	CACCATTGATAGTGTTT
chr13	44690505	44690506	chr13:44690506:T:G	rs144795749	T	G	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr13	45086134	45086135	chr13:45086135:C:T	rs79073383	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr13	45120789	45120790	chr13:45120790:C:T	rs185419733	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr13	45326131	45326132	chr13:45326132:G:A	rs7323755	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr13	45329680	45329681	chr13:45329681:A:C	rs540219881	A	C	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr13	45528096	45528097	chr13:45528097:A:C	rs12583179	A	C	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr13	45538599	45538600	chr13:45538600:A:G	rs3014905	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr13	45829834	45829835	chr13:45829835:A:T	rs79174114	A	T	A	Sox3.mouse_HMG_1	4	1	+	6.0693918850489545	-0.24491654145487096	CAGCAATTATCTTGTTT
chr13	45829854	45829855	chr13:45829855:C:T	rs970691	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr13	46170145	46170146	chr13:46170146:A:G	rs74074037	A	G	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr13	46170163	46170164	chr13:46170164:T:C	rs59792695	T	C	T	Sox3.mouse_HMG_1	15	1	+	10.575940859828451	6.273439062032967	TAACAATAATATTCTTG
chr13	46600409	46600410	chr13:46600410:G:A	rs7990097	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr13	46760048	46760049	chr13:46760049:G:C	rs7332790	G	C	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr13	47033365	47033366	chr13:47033366:A:G	rs149178528	A	G	A	Sox3.mouse_HMG_1	10	1	+	1.7665770367973839	-5.141668122173955	CAGCATTGACATTGTGG
chr13	47126198	47126199	chr13:47126199:T:G	rs1560525	T	G	G	Sox3.mouse_HMG_1	4	1	-	3.9984202696983195	-2.7268934452892872	GAACAATTTTGTTGTGG
chr13	47182172	47182173	chr13:47182173:T:C	rs4142742	T	C	C	Sox3.mouse_HMG_1	9	1	+	11.110219378126756	11.145925503011325	GAACAATACTACTGTTT
chr13	47673809	47673810	chr13:47673810:A:G	rs2406596	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr13	47808038	47808039	chr13:47808039:C:T	rs2209381	C	T	C	Sox3.mouse_HMG_1	7	1	-	2.626578401631952	2.130508081854641	GTACCATGGTAGTGTTA
chr13	47847864	47847865	chr13:47847865:T:A	rs1590454	T	A	A	Sox3.mouse_HMG_1	0	1	-	6.905952461719553	4.882798136403308	AAATAATGAAAATGTTT
chr13	48302467	48302468	chr13:48302468:G:A	rs182786995	G	A	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr13	48399865	48399866	chr13:48399866:A:G	rs117644718	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr13	48884686	48884687	chr13:48884687:A:G	rs6561482	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.142075099105666	-3.58405837819679	AAAATATAACAGTGTTA
chr13	48884699	48884700	chr13:48884700:G:A	rs58828227	G	A	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr13	49078284	49078285	chr13:49078285:G:A	rs1359066	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr13	49293125	49293126	chr13:49293126:C:A	rs7993195	C	A	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr13	49293153	49293154	chr13:49293154:T:C	rs3087770	T	C	T	Sox3.mouse_HMG_1	1	1	-	7.228402041354955	2.900968697952263	AAGCAATCTCAGTGTTT
chr13	49450717	49450718	chr13:49450718:C:G	rs9568206	C	G	C	Sox3.mouse_HMG_1	8	1	-	3.7373183043774123	3.631171316008973	AAACCATGGAAATGTTA
chr13	49450734	49450735	chr13:49450735:A:G	rs1998782	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr13	49568363	49568364	chr13:49568364:T:C	rs12430435	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr13	49630194	49630195	chr13:49630195:A:G	rs7986690	A	G	G	Sox3.mouse_HMG_1	14	1	-	3.3625096886269557	-2.7473812266217523	AAACAACGGAAGAGTTT
chr13	50069451	50069452	chr13:50069452:C:A	rs2066569	C	A	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr13	50513306	50513307	chr13:50513307:C:A	rs202346	C	A	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr13	50589069	50589070	chr13:50589070:G:T	rs3118920	G	T	G	Sox3.mouse_HMG_1	3	1	-	4.573823352514069	-2.1508901103496303	CAACCATGAAAATGTTT
chr13	50680059	50680060	chr13:50680060:A:G	rs1272436	A	G	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr13	50708547	50708548	chr13:50708548:G:A	rs797510	G	A	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr13	50842721	50842722	chr13:50842722:A:T	rs138507395	A	T	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr13	50901984	50901985	chr13:50901985:A:G	rs74998667	A	G	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr13	51098331	51098332	chr13:51098332:C:A	rs9563020	C	A	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr13	51159555	51159556	chr13:51159556:C:G	rs9568536	C	G	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr13	51163882	51163883	chr13:51163883:G:A	rs7331971	G	A	G	Sox3.mouse_HMG_1	7	1	+	2.031409919599542	1.535339599822232	AAACACCGCAAGTGTTT
chr13	51681498	51681499	chr13:51681499:C:A	rs117143421	C	A	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr13	52193774	52193775	chr13:52193775:G:C	rs9535897	G	C	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr13	52193823	52193824	chr13:52193824:A:C	chr13:52193824:A:C	A	C	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr13	52455133	52455134	chr13:52455134:G:A	chr13:52455134:G:A	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr13	52618130	52618131	chr13:52618131:A:G	rs536807902	A	G	a	Sox3.mouse_HMG_1	0	1	+	2.8626597642804232	1.489843098818883	AGACAATTTAAGTGCTG
chr13	53049099	53049100	chr13:53049100:G:C	rs2185961	G	C	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr13	53080358	53080359	chr13:53080359:C:T	rs77306542	C	T	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr13	53466347	53466348	chr13:53466348:A:G	rs1348466	A	G	A	Sox3.mouse_HMG_1	14	1	-	4.430837823463281	-1.679053091785426	AAACAATAAAAGAATTT
chr13	53709191	53709192	chr13:53709192:G:T	rs9536528	G	T	G	Sox3.mouse_HMG_1	3	1	+	5.962822784779301	6.887081686302634	AAAGAATGACATTTTTG
chr13	56529050	56529051	chr13:56529051:T:C	rs7139663	T	C	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr13	56860459	56860460	chr13:56860460:G:C	rs7333137	G	C	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr13	57083562	57083563	chr13:57083563:A:C	rs9591792	A	C	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr13	57825473	57825474	chr13:57825474:C:A	rs9569759	C	A	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr13	58620927	58620928	chr13:58620928:A:T	rs117878781	A	T	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr13	58774942	58774943	chr13:58774943:C:T	rs1333527	C	T	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr13	59127697	59127698	chr13:59127698:C:T	rs74084015	C	T	C	Sox3.mouse_HMG_1	13	1	-	11.642774581715873	5.534668791689958	AAACAATTACAGTGTAA
chr13	59446054	59446055	chr13:59446055:A:C	rs11148472	A	C	C	Sox3.mouse_HMG_1	0	1	+	2.7870073892145735	1.197415876862375	AAGCTATTTTATTGTCT
chr13	59751150	59751151	chr13:59751151:G:A	rs144424118	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr13	60000363	60000364	chr13:60000364:A:C	chr13:60000364:A:C	A	C	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr13	60146981	60146982	chr13:60146982:T:C	rs9538575	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr13	60696858	60696859	chr13:60696859:T:G	rs79595912	T	G	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr13	60958023	60958024	chr13:60958024:T:C	chr13:60958024:T:C	T	C	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr13	61096624	61096625	chr13:61096625:A:G	rs3106601	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr13	61149274	61149275	chr13:61149275:G:A	rs9563888	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr13	61149324	61149325	chr13:61149325:G:A	rs9539048	G	A	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr13	61183886	61183887	chr13:61183887:A:G	rs34161939	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr13	61675618	61675619	chr13:61675619:C:T	rs9598336	C	T	C	Sox3.mouse_HMG_1	3	1	+	3.9713372119402797	-2.0114389061940425	CAGCAATGAAATTGAAT
chr13	61892723	61892724	chr13:61892724:C:T	rs7330103	C	T	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr13	62176096	62176097	chr13:62176097:A:G	rs308615	A	G	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr13	62305197	62305198	chr13:62305198:G:A	rs309104	G	A	G	Sox3.mouse_HMG_1	7	1	+	4.610074273365163	4.1140039535878525	TAGCAAGGTTATTGTTA
chr13	62890672	62890673	chr13:62890673:G:A	rs12429396	G	A	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr13	63042875	63042876	chr13:63042876:G:C	rs75324258	G	C	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr13	63042877	63042878	chr13:63042878:A:G	rs74638126	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr13	63294429	63294430	chr13:63294430:A:T	rs7334896	A	T	T	Sox3.mouse_HMG_1	14	1	-	7.715873029521665	2.4303956808265736	AGACAGTGATATTGTTA
chr13	63374891	63374892	chr13:63374892:C:A	rs9317303	C	A	C	Sox3.mouse_HMG_1	16	1	-	2.7345949635660047	3.7004466043231172	TAAGAATTAGATTGTTG
chr13	63419765	63419766	chr13:63419766:A:G	rs9539741	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr13	63433784	63433785	chr13:63433785:A:G	rs597714	A	G	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr13	63551589	63551590	chr13:63551590:G:A	rs9564075	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr13	64154328	64154329	chr13:64154329:T:C	rs2175002	T	C	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr13	64239489	64239490	chr13:64239490:G:T	rs1354167380	G	T	G	Sox3.mouse_HMG_1	0	1	-	5.262138987019108	6.851730499371309	CAACATTGTCAGTGTAT
chr13	64317064	64317065	chr13:64317065:T:C	rs11148643	T	C	C	Sox3.mouse_HMG_1	8	1	-	3.037096001966612	2.010682526955975	AATCAATGACATTTTAA
chr13	64420577	64420578	chr13:64420578:C:T	rs35199816	C	T	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr13	64659902	64659903	chr13:64659903:T:C	rs359359	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr13	64680748	64680749	chr13:64680749:A:G	rs61952268	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr13	65011580	65011581	chr13:65011581:G:A	rs115569079	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr13	65676131	65676132	chr13:65676132:A:G	rs9571452	A	G	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr13	66118817	66118818	chr13:66118818:G:A	rs4132798	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr13	66118839	66118840	chr13:66118840:T:C	rs10507729	T	C	T	Sox3.mouse_HMG_1	11	1	+	5.455965907819976	-0.6014902011403768	TAACAAGAATATTGATT
chr13	66410325	66410326	chr13:66410326:G:A	rs9529057	G	A	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr13	66624592	66624593	chr13:66624593:A:G	rs9529106	A	G	A	Sox3.mouse_HMG_1	11	1	-	10.424341964208265	4.3668858552479115	TAGCAATAAAATTGTTA
chr13	66805678	66805679	chr13:66805679:T:A	rs17081881	T	A	T	Sox3.mouse_HMG_1	11	1	+	9.538135775351742	3.6756796814451165	AAAAAATAGAATTGTTG
chr13	66992880	66992881	chr13:66992881:G:A	rs73211152	G	A	g	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr13	67439214	67439215	chr13:67439215:T:C	rs1781573	T	C	T	Sox3.mouse_HMG_1	0	1	+	3.238659938716039	3.6722227516800845	TAACAGTAGCAGTGTGT
chr13	69487792	69487793	chr13:69487793:G:A	rs73206486	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr13	69487795	69487796	chr13:69487796:A:G	rs1393658	A	G	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr13	70042905	70042906	chr13:70042906:G:C	rs79303832	G	C	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr13	70090030	70090031	chr13:70090031:T:A	rs9572362	T	A	T	Sox3.mouse_HMG_1	9	1	+	6.05939197078701	4.641453708842478	AATCAATAGTATTGATA
chr13	70311098	70311099	chr13:70311099:T:A	rs11616647	T	A	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr13	70683861	70683862	chr13:70683862:C:T	rs337940	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr13	70856248	70856249	chr13:70856249:C:G	rs17087595	C	G	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr13	71305402	71305403	chr13:71305403:T:C	rs12584006	T	C	T	Sox3.mouse_HMG_1	10	1	-	4.912121641987606	-1.9961235169837312	TAACAATTATATAATTT
chr13	71318064	71318065	chr13:71318065:C:T	rs9599825	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr13	72151574	72151575	chr13:72151575:T:G	rs585032	T	G	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr13	72220871	72220872	chr13:72220872:G:A	rs659265	G	A	g	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr13	72295358	72295359	chr13:72295359:G:A	rs113707011	G	A	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr13	72681606	72681607	chr13:72681607:C:T	rs9543063	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr13	73138036	73138037	chr13:73138037:C:T	rs12873808	C	T	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr13	73366108	73366109	chr13:73366109:A:G	rs9543331	A	G	A	Sox3.mouse_HMG_1	11	1	-	7.025330698912929	0.9678745899525761	AAACTATAACATTTTTT
chr13	73618669	73618670	chr13:73618670:A:G	rs138426676	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr13	73708483	73708484	chr13:73708484:G:T	rs150823534	G	T	G	Sox3.mouse_HMG_1	3	1	-	1.7868940541989151	-4.937819408664785	GAACAATGACACTGACA
chr13	73722417	73722418	chr13:73722418:C:T	rs11617997	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr13	73822689	73822690	chr13:73822690:T:C	rs9565044	T	C	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr13	74088059	74088060	chr13:74088060:G:A	rs7328778	G	A	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr13	74630034	74630035	chr13:74630035:G:A	rs1359690	G	A	G	Sox3.mouse_HMG_1	7	1	+	6.572934030935757	6.076863711158447	AGGCAATGACATTGTAA
chr13	74811168	74811169	chr13:74811169:C:A	rs4307837	C	A	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr13	75365368	75365369	chr13:75365369:G:C	rs4052617	G	C	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr13	75406074	75406075	chr13:75406075:G:A	rs74096270	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr13	75406084	75406085	chr13:75406085:G:T	chr13:75406085:G:T	G	T	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr13	75406085	75406086	chr13:75406086:C:T	chr13:75406086:C:T	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr13	76001413	76001414	chr13:76001414:T:C	rs9573713	T	C	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr13	76489394	76489395	chr13:76489395:A:G	rs493863	A	G	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr13	76489426	76489427	chr13:76489427:G:A	rs493779	G	A	A	Sox3.mouse_HMG_1	3	1	-	6.970855764981275	0.9880796468469533	ATACAATGATGTTGTTA
chr13	76706841	76706842	chr13:76706842:G:C	rs116866181	G	C	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr13	76787580	76787581	chr13:76787581:C:T	rs76842352	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr13	76787617	76787618	chr13:76787618:A:G	rs8000613	A	G	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr13	76943705	76943706	chr13:76943706:A:G	rs76782107	A	G	A	Sox3.mouse_HMG_1	12	1	-	3.3521854333330454	-2.854280151884806	GAAGAAAACTATTGTTT
chr13	77375159	77375160	chr13:77375160:G:C	rs9574042	G	C	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr13	77817621	77817622	chr13:77817622:C:T	rs1279403	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr13	78037103	78037104	chr13:78037104:T:C	rs118025507	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr13	78276040	78276041	chr13:78276041:G:A	rs9601024	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr13	78302401	78302402	chr13:78302402:T:C	rs7996252	T	C	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr13	78735733	78735734	chr13:78735734:A:T	rs9574284	A	T	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr13	78881360	78881361	chr13:78881361:G:A	rs113601301	G	A	G	Sox3.mouse_HMG_1	12	1	+	5.890328967019772	6.870264964054284	AAACAATATCAGGGTCT
chr13	79532035	79532036	chr13:79532036:C:T	rs117613930	C	T	c	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr13	79532037	79532038	chr13:79532038:A:G	rs73553418	A	G	a	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr13	79636971	79636972	chr13:79636972:C:T	rs9318646	C	T	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr13	79736635	79736636	chr13:79736636:G:A	rs1577404	G	A	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr13	79851156	79851157	chr13:79851157:G:C	rs7337191	G	C	C	Sox3.mouse_HMG_1	3	1	-	6.71697164541013	-0.190063374247522	AAACAATTCCATTGAGG
chr13	80049210	80049211	chr13:80049211:A:C	rs7981942	A	C	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr13	80198299	80198300	chr13:80198300:C:T	rs9574595	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr13	80633545	80633546	chr13:80633546:C:T	rs1027488533	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr13	80871824	80871825	chr13:80871825:T:C	rs17073466	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr13	80904106	80904107	chr13:80904107:A:G	rs77954875	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr13	80904138	80904139	chr13:80904139:C:T	rs12863227	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr13	80979319	80979320	chr13:80979320:A:G	rs73232860	A	G	A	Sox3.mouse_HMG_1	2	1	+	3.2359045348915796	-1.1720304440888798	AAATAAGAAAAGTGTTT
chr13	81783888	81783889	chr13:81783889:C:A	rs446371	C	A	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr13	81872368	81872369	chr13:81872369:G:A	rs12430148	G	A	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr13	82688239	82688240	chr13:82688240:G:C	rs1333572	G	C	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr13	82817211	82817212	chr13:82817212:T:G	rs61961333	T	G	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr13	84649867	84649868	chr13:84649868:T:A	rs72629431	T	A	T	Sox3.mouse_HMG_1	6	1	+	7.136232783403178	0.22777774930676736	AAATAATAATATAGTTG
chr13	84917415	84917416	chr13:84917416:C:T	chr13:84917416:C:T	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr13	85261696	85261697	chr13:85261697:T:C	rs2451428	T	C	T	Sox3.mouse_HMG_1	10	1	-	3.9206860901474228	-2.9875590688239164	ATACATTTTCAGTGTTT
chr13	85514093	85514094	chr13:85514094:T:C	rs9547245	T	C	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr13	85695013	85695014	chr13:85695014:G:A	rs9531824	G	A	g	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr13	85717783	85717784	chr13:85717784:G:A	rs17080098	G	A	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr13	85943906	85943907	chr13:85943907:A:G	rs71442107	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr13	85985868	85985869	chr13:85985869:C:T	rs60258005	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr13	86088199	86088200	chr13:86088200:T:C	rs74102186	T	C	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr13	86188298	86188299	chr13:86188299:G:A	rs878907166	G	A	g	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr13	86201735	86201736	chr13:86201736:T:C	rs879064870	T	C	t	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr13	86201751	86201752	chr13:86201752:G:C	rs1238566106	G	C	N	Sox3.mouse_HMG_1	11	1	+	4.200268586613729	0.2707911445142568	AAACAATGCAAGAGTCA
chr13	86552776	86552777	chr13:86552777:C:T	rs9560253	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr13	87123979	87123980	chr13:87123980:C:A	rs55776587	C	A	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr13	87130293	87130294	chr13:87130294:T:C	rs55834633	T	C	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr13	87781574	87781575	chr13:87781575:A:G	rs1537735	A	G	a	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr13	88324755	88324756	chr13:88324756:G:C	rs1041690	G	C	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr13	88337649	88337650	chr13:88337650:C:T	rs9520282	C	T	-	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr13	88593311	88593312	chr13:88593312:G:T	rs12874485	G	T	G	Sox3.mouse_HMG_1	13	1	+	3.6344156482075776	-2.7347039671879574	AAACAAAGACAGGGTTG
chr13	89218306	89218307	chr13:89218307:A:G	rs182609	A	G	G	Sox3.mouse_HMG_1	2	1	+	5.403393975365849	0.9954589963853854	AAAAAAAGCTATTGTTT
chr13	89376005	89376006	chr13:89376006:T:C	rs6492429	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr13	89486423	89486424	chr13:89486424:A:G	rs113430571	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr13	91113046	91113047	chr13:91113047:C:T	rs558827	C	T	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr13	91544714	91544715	chr13:91544715:G:A	rs56356348	G	A	G	Sox3.mouse_HMG_1	3	1	-	1.3690106472778183	-4.613765470856504	TAACTAGAACAGTGTTG
chr13	92224253	92224254	chr13:92224254:C:T	rs72636840	C	T	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr13	93807221	93807222	chr13:93807222:T:C	rs9516294	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr13	94146061	94146062	chr13:94146062:G:A	rs495705	G	A	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr13	94239423	94239424	chr13:94239424:C:T	rs145147176	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr13	94903200	94903201	chr13:94903201:T:C	rs9561714	T	C	t	Sox3.mouse_HMG_1	12	1	+	2.6916017917133543	-3.5148637935044973	ACACAATGATAGTGCTC
chr13	94978602	94978603	chr13:94978603:A:T	rs9590150	A	T	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr13	95348357	95348358	chr13:95348358:G:A	rs1556838	G	A	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr13	95653124	95653125	chr13:95653125:C:G	rs61975172	C	G	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr13	96036732	96036733	chr13:96036733:A:G	rs7335872	A	G	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr13	96071519	96071520	chr13:96071520:G:A	rs536606	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr13	96105005	96105006	chr13:96105006:G:A	rs74549515	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr13	96108377	96108378	chr13:96108378:G:A	rs142122489	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr13	96272076	96272077	chr13:96272077:G:A	rs1927789	G	A	A	Sox3.mouse_HMG_1	3	1	-	1.924325602482407	-4.058450515651916	TTACAATGGCTGTGTTA
chr13	96860688	96860689	chr13:96860689:T:G	rs1331278	T	G	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr13	97570595	97570596	chr13:97570596:A:G	rs9634497	A	G	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr13	97810223	97810224	chr13:97810224:G:C	rs140996504	G	C	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr13	98214802	98214803	chr13:98214803:A:G	rs9556909	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr13	98238801	98238802	chr13:98238802:G:T	rs2892898	G	T	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr13	98255558	98255559	chr13:98255559:C:T	rs76779601	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr13	98294259	98294260	chr13:98294260:A:G	rs4772067	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr13	98986501	98986502	chr13:98986502:T:G	rs72651858	T	G	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr13	98996163	98996164	chr13:98996164:T:C	rs912688	T	C	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr13	99295006	99295007	chr13:99295007:C:T	rs2230341	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr13	99564654	99564655	chr13:99564655:T:G	rs4290346	T	G	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr13	99737981	99737982	chr13:99737982:A:G	rs17577153	A	G	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr13	99859749	99859750	chr13:99859750:T:C	rs17658053	T	C	T	Sox3.mouse_HMG_1	5	1	-	7.52392542664869	0.7977919493462349	AAACAATCATAGTGTAA
chr13	100473861	100473862	chr13:100473862:A:G	rs9518078	A	G	A	Sox3.mouse_HMG_1	8	1	+	2.421273056043064	1.3948595810324282	GCACAATGACATCGTGT
chr13	100941525	100941526	chr13:100941526:G:A	rs9518222	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr13	100980806	100980807	chr13:100980807:T:C	rs2803229	T	C	T	Sox3.mouse_HMG_1	9	1	+	6.3605398888703455	6.396246013754913	AAAAAATGGTACTGTTT
chr13	101049394	101049395	chr13:101049395:C:T	rs3751403	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr13	101049411	101049412	chr13:101049412:G:C	rs628949	G	C	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr13	101082838	101082839	chr13:101082839:T:C	rs111383689	T	C	T	Sox3.mouse_HMG_1	10	1	-	2.871668775730458	-4.03657638324088	CAACAATGTCAGTTGTT
chr13	101082859	101082860	chr13:101082860:G:A	rs17677552	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr13	101287484	101287485	chr13:101287485:T:A	rs34912180	T	A	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr13	101329419	101329420	chr13:101329420:T:C	rs506746	T	C	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr13	101585446	101585447	chr13:101585447:T:C	rs4772393	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr13	102199163	102199164	chr13:102199164:G:A	rs566197064	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr13	102550795	102550796	chr13:102550796:T:C	rs7983718	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr13	102664654	102664655	chr13:102664655:G:A	rs658483	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr13	103031094	103031095	chr13:103031095:C:T	rs1017357819	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr13	103031097	103031098	chr13:103031098:G:A	rs7985116	G	A	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr13	103285221	103285222	chr13:103285222:C:T	rs11618565	C	T	C	Sox3.mouse_HMG_1	7	1	-	1.6678749034151157	1.171804583637804	GGACAATGGCATTCTCA
chr13	103517107	103517108	chr13:103517108:T:A	rs146426820	T	A	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr13	103539497	103539498	chr13:103539498:C:T	rs143494156	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr13	103658521	103658522	chr13:103658522:A:T	rs16962926	A	T	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr13	104007139	104007140	chr13:104007140:C:T	rs1849445	C	T	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr13	104009985	104009986	chr13:104009986:T:C	rs1033147	T	C	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr13	104132979	104132980	chr13:104132980:G:A	rs7332734	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr13	104237988	104237989	chr13:104237989:T:A	rs748412817	T	A	T	Sox3.mouse_HMG_1	16	1	+	4.862458819359606	3.4627757338813865	TCACAATTATATTCTTT
chr13	104733824	104733825	chr13:104733825:A:G	rs10492585	A	G	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr13	104735801	104735802	chr13:104735802:A:G	rs73596536	A	G	A	Sox3.mouse_HMG_1	4	1	+	4.2341522176957	-2.578172874281536	AAACAACACTAGTGTGG
chr13	105001190	105001191	chr13:105001191:A:C	rs61966187	A	C	A	Sox3.mouse_HMG_1	6	1	-	5.2593289289416205	-1.6491261051547883	AAATAATGCCAGTGTCA
chr13	105201753	105201754	chr13:105201754:T:C	rs9558512	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr13	105276821	105276822	chr13:105276822:T:C	chr13:105276822:T:C	T	C	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr13	105276826	105276827	chr13:105276827:A:C	chr13:105276827:A:C	A	C	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr13	105337551	105337552	chr13:105337552:A:G	rs12868276	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr13	105608819	105608820	chr13:105608820:A:G	rs149449054	A	G	A	Sox3.mouse_HMG_1	5	1	+	6.802661527800354	0.0765280504978999	AAACAATAATTCTGTTT
chr13	105755850	105755851	chr13:105755851:A:G	rs7325541	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr13	105848991	105848992	chr13:105848992:C:T	rs9586995	C	T	T	Sox3.mouse_HMG_1	3	1	+	5.712949822089625	-0.2698262960446961	GAACAACAGAATTGTAT
chr13	105924979	105924980	chr13:105924980:G:A	rs12877779	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr13	105953049	105953050	chr13:105953050:A:T	rs34786465	A	T	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr13	106145366	106145367	chr13:106145367:C:T	rs12868856	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr13	106399899	106399900	chr13:106399900:C:A	rs911994	C	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr13	106415372	106415373	chr13:106415373:G:A	rs57762306	G	A	G	Sox3.mouse_HMG_1	3	1	+	9.220100667464658	9.402422224258613	AAAGAATAAAAGTGTTT
chr13	106424969	106424970	chr13:106424970:A:G	rs7982572	A	G	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr13	106424995	106424996	chr13:106424996:T:C	rs7988369	T	C	T	Sox3.mouse_HMG_1	10	1	-	5.387643715190311	-1.520601443781028	GAGCAAAGACAGTGTTT
chr13	106865755	106865756	chr13:106865756:G:A	rs9520232	G	A	g	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr13	107271497	107271498	chr13:107271498:C:G	rs75312685	C	G	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr13	107563491	107563492	chr13:107563492:A:G	rs551103	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr13	107563544	107563545	chr13:107563545:T:G	rs7332705	T	G	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr13	107586074	107586075	chr13:107586075:T:A	rs2391460	T	A	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr13	107767144	107767145	chr13:107767145:G:C	rs539668017	G	C	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr13	108083198	108083199	chr13:108083199:G:T	rs16971838	G	T	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr13	108127106	108127107	chr13:108127107:T:G	rs7987766	T	G	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr13	108352528	108352529	chr13:108352529:G:A	rs9301291	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr13	108408773	108408774	chr13:108408774:G:A	rs77461588	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr13	108598132	108598133	chr13:108598133:G:A	rs9587626	G	A	G	Sox3.mouse_HMG_1	13	1	+	1.879906763368502	-4.228199026657415	GATCAATATCAGCGTTA
chr13	108828207	108828208	chr13:108828208:C:A	rs432905	C	A	A	Sox3.mouse_HMG_1	13	1	-	10.592904914840078	4.223785299444543	AAACAATAACAGAGTTA
chr13	109147102	109147103	chr13:109147103:A:G	rs275945	A	G	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr13	109496219	109496220	chr13:109496220:A:T	rs7330182	A	T	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr13	109611966	109611967	chr13:109611967:C:T	rs9583401	C	T	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr13	109611996	109611997	chr13:109611997:A:C	rs9587932	A	C	A	Sox3.mouse_HMG_1	15	1	+	2.676954780473637	1.8712966044706247	AAACAACAGCAATGTAT
chr13	109700211	109700212	chr13:109700212:G:A	rs67003080	G	A	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr13	109773600	109773601	chr13:109773601:T:C	rs56920445	T	C	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr13	110024179	110024180	chr13:110024180:A:G	rs74533944	A	G	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr13	110128739	110128740	chr13:110128740:A:G	rs7320138	A	G	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr13	110160036	110160037	chr13:110160037:A:T	rs655676	A	T	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr13	110221455	110221456	chr13:110221456:C:A	rs75698772	C	A	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr13	110233156	110233157	chr13:110233157:A:T	rs76289502	A	T	a	Sox3.mouse_HMG_1	16	1	-	5.569130079197951	4.169446993719731	AAACAATGAATTTTTTT
chr13	110246522	110246523	chr13:110246523:T:C	rs614282	T	C	T	Sox3.mouse_HMG_1	5	1	-	4.7701563386027335	-1.9559771386997218	CACCAATGAAATTGTGA
chr13	110254624	110254625	chr13:110254625:G:T	rs652211	G	T	t	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr13	110300739	110300740	chr13:110300740:G:A	rs9515182	G	A	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr13	110308595	110308596	chr13:110308596:G:A	rs3809346	G	A	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr13	110423310	110423311	chr13:110423311:T:G	rs8001158	T	G	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr13	110577009	110577010	chr13:110577010:T:C	rs7985063	T	C	t	Sox3.mouse_HMG_1	11	1	+	2.1675724884548515	-3.8898836205055014	AAGCATTGATATTGATA
chr13	110950475	110950476	chr13:110950476:T:C	rs1962025	T	C	.	Sox3.mouse_HMG_1	6	1	+	2.106904000226171	-4.539186769402749	CAGCAATGACATGGTGG
chr13	110956478	110956479	chr13:110956479:C:T	rs9522015	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr13	110983711	110983712	chr13:110983712:C:T	rs9515332	C	T	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr13	111127038	111127039	chr13:111127039:A:G	rs73633230	A	G	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr13	111397843	111397844	chr13:111397844:C:T	rs9560053	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr13	111952595	111952596	chr13:111952596:A:G	rs735223	A	G	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr13	112012049	112012050	chr13:112012050:T:C	rs1277778	T	C	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr13	112271405	112271406	chr13:112271406:A:G	rs9549943	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr13	112327671	112327672	chr13:112327672:A:T	rs1752741	A	T	A	Sox3.mouse_HMG_1	2	1	+	3.378991059406073	-2.52309567655069	GAACAATAATAGTAATA
chr13	112435650	112435651	chr13:112435651:C:T	rs9549520	C	T	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr13	112751001	112751002	chr13:112751002:G:C	rs383426	G	C	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr13	112876590	112876591	chr13:112876591:C:T	rs4907468	C	T	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr13	112946608	112946609	chr13:112946609:T:C	rs12864060	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.822425758950099	-3.903707718352355	AAACAATGACCTTGAGG
chr13	113546497	113546498	chr13:113546498:C:T	rs2259180	C	T	.	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr13	113618097	113618098	chr13:113618098:G:A	rs117560049	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr13	113792158	113792159	chr13:113792159:A:G	rs7490106	A	G	G	Sox3.mouse_HMG_1	5	1	+	10.89847725497369	4.172343777671236	AAACAATTACATTTTTA
chr13	114079521	114079522	chr13:114079522:G:A	rs1572932	G	A	g	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr14	19772639	19772640	chr14:19772640:G:A	rs72663708	G	A	g	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr14	19825870	19825871	chr14:19825871:T:C	rs10135845	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr14	20489273	20489274	chr14:20489274:T:C	rs12147450	T	C	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr14	20614228	20614229	chr14:20614229:G:T	rs141194204	G	T	G	Sox3.mouse_HMG_1	16	1	+	1.6797843682502769	2.645636009007389	GGACAAGGAAATTGTAG
chr14	20627406	20627407	chr14:20627407:T:C	rs11626464	T	C	T	Sox3.mouse_HMG_1	1	1	-	4.171123862430862	-0.15630948097183045	GAACAATTGCCTTGTGG
chr14	21104891	21104892	chr14:21104892:A:T	rs73571905	A	T	A	Sox3.mouse_HMG_1	7	1	+	4.966338967509146	3.924860182544301	AAACAATATTTTTCTTG
chr14	21557328	21557329	chr14:21557329:G:A	rs112302555	G	A	G	Sox3.mouse_HMG_1	3	1	-	4.38565058079213	-1.5971255373421913	GAACATTAAAATAGTTT
chr14	21860187	21860188	chr14:21860188:T:C	rs17197473	T	C	T	Sox3.mouse_HMG_1	16	1	+	2.1436585562666344	-1.458138109354348	AGGCAGTTGTATTGTTT
chr14	21875977	21875978	chr14:21875978:C:A	rs10438001	C	A	C	Sox3.mouse_HMG_1	13	1	-	4.301855145845784	-2.0672644695497513	AGACATTTATAGTGTTG
chr14	21925175	21925176	chr14:21925176:G:A	rs35954874	G	A	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr14	22065998	22065999	chr14:22065999:G:A	rs3811309	G	A	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr14	22194961	22194962	chr14:22194962:T:C	rs17255510	T	C	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr14	22202563	22202564	chr14:22202564:C:T	rs2075494	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr14	22245255	22245256	chr14:22245256:C:T	rs1023437	C	T	C	Sox3.mouse_HMG_1	11	1	-	3.8533760645950186	0.11889863754927171	TGAGAATGACAGTGTTG
chr14	22547754	22547755	chr14:22547755:A:C	rs61741618	A	C	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr14	22561736	22561737	chr14:22561737:A:C	rs1384964	A	C	a	Sox3.mouse_HMG_1	2	1	+	1.820035695916037	-4.60529918380528	TCACAACAAAAGTGTTT
chr14	22561736	22561737	chr14:22561737:A:G	chr14:22561737:A:G	A	G	a	Sox3.mouse_HMG_1	2	1	+	1.820035695916037	-2.587899283064427	TCACAACAAAAGTGTTT
chr14	22561768	22561769	chr14:22561769:T:C	chr14:22561769:T:C	T	C	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr14	22561768	22561769	chr14:22561769:T:G	rs17119810	T	G	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr14	22569505	22569506	chr14:22569506:T:A	rs5742839	T	A	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr14	22710755	22710756	chr14:22710756:C:G	rs6572676	C	G	A	Sox3.mouse_HMG_1	16	1	-	1.5732890624485814	-1.0626559624152885	ATCCTATGATATTGTTG
chr14	22801890	22801891	chr14:22801891:A:G	rs2331772	A	G	G	Sox3.mouse_HMG_1	5	1	+	3.176830872527739	-3.549302604774717	AGACAATGACAGTGCAG
chr14	23143279	23143280	chr14:23143280:C:G	rs2273394	C	G	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr14	23143297	23143298	chr14:23143298:G:A	rs45589331	G	A	G	Sox3.mouse_HMG_1	4	1	+	2.5792210373438444	9.391546129321082	TGACGATGACATTGTAG
chr14	23478292	23478293	chr14:23478293:T:C	rs7158784	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr14	23912243	23912244	chr14:23912244:G:C	rs8010302	G	C	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr14	23987766	23987767	chr14:23987767:G:A	rs56171184	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr14	24196347	24196348	chr14:24196348:C:T	chr14:24196348:C:T	C	T	C	Sox3.mouse_HMG_1	13	1	-	3.8588097815299385	-2.2492960084959774	TAACAATAACCATGTTA
chr14	24431104	24431105	chr14:24431105:T:C	rs61021873	T	C	T	Sox3.mouse_HMG_1	10	1	-	3.0410964156153644	-3.867148743355974	AAACAAATATAGAGTTG
chr14	24775682	24775683	chr14:24775683:A:C	rs72681083	A	C	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr14	24881733	24881734	chr14:24881734:A:C	rs61109574	A	C	A	Sox3.mouse_HMG_1	0	1	+	6.959913763070434	5.3703222507182335	AAATAATGACAATGTTA
chr14	25007224	25007225	chr14:25007225:A:G	rs1957762	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr14	25041877	25041878	chr14:25041878:G:C	rs17257773	G	C	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr14	25349109	25349110	chr14:25349110:C:T	rs11159245	C	T	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr14	25676025	25676026	chr14:25676026:G:T	rs61981956	G	T	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr14	25756090	25756091	chr14:25756091:A:G	rs1951046	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr14	26114415	26114416	chr14:26114416:A:G	rs61987606	A	G	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr14	26125174	26125175	chr14:26125175:T:C	rs12892350	T	C	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr14	26162496	26162497	chr14:26162497:T:A	rs143318361	T	A	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr14	26967147	26967148	chr14:26967148:G:C	rs548866406	G	C	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr14	26967169	26967170	chr14:26967170:C:G	chr14:26967170:C:G	C	G	C	Sox3.mouse_HMG_1	13	1	-	2.683401419430738	-3.4247043705951787	AAAGAATGGCATTGACT
chr14	27075316	27075317	chr14:27075317:T:C	rs4332679	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.1500152651388569	-5.576118212163598	AAACAAAAGCACTGTGT
chr14	27092266	27092267	chr14:27092267:C:G	rs79087392	C	G	C	Sox3.mouse_HMG_1	7	1	-	3.215635319935883	-2.4050568149888907	AAATAATGACATTGCAA
chr14	27252859	27252860	chr14:27252860:C:G	rs8019185	C	G	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr14	27929282	27929283	chr14:27929283:C:A	rs17113237	C	A	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr14	27962566	27962567	chr14:27962567:T:C	rs80197549	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr14	28129745	28129746	chr14:28129746:C:G	rs1191379	C	G	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr14	28321366	28321367	chr14:28321367:C:A	rs10143199	C	A	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr14	29030484	29030485	chr14:29030485:C:G	rs17114423	C	G	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr14	29822597	29822598	chr14:29822598:C:T	rs149513116	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr14	30228343	30228344	chr14:30228344:A:T	rs116242849	A	T	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr14	31284299	31284300	chr14:31284300:T:C	rs114379784	T	C	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr14	31458318	31458319	chr14:31458319:G:A	rs145449343	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr14	31935697	31935698	chr14:31935698:T:C	rs74041542	T	C	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr14	31958589	31958590	chr14:31958590:A:C	rs4981938	A	C	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr14	32019126	32019127	chr14:32019127:C:T	rs8019596	C	T	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr14	32193311	32193312	chr14:32193312:T:G	rs17387785	T	G	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr14	32480376	32480377	chr14:32480377:G:A	rs73267310	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr14	32964696	32964697	chr14:32964697:G:A	rs2748836	G	A	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr14	33150859	33150860	chr14:33150860:C:T	rs17100249	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr14	33333828	33333829	chr14:33333829:C:G	rs17567572	C	G	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr14	33455969	33455970	chr14:33455970:A:G	rs17101249	A	G	A	Sox3.mouse_HMG_1	1	1	+	0.3144886296033002	-4.012944713799391	AAACCATGTCTTTGTGG
chr14	33461003	33461004	chr14:33461004:G:A	rs7159209	G	A	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr14	33566800	33566801	chr14:33566801:A:G	rs12432766	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr14	33768746	33768747	chr14:33768747:T:A	rs36059107	T	A	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr14	34050414	34050415	chr14:34050415:A:G	rs72668072	A	G	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr14	34424910	34424911	chr14:34424911:G:A	rs1016665593	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr14	34570028	34570029	chr14:34570029:C:T	rs12884997	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr14	34570061	34570062	chr14:34570062:G:T	rs7148131	G	T	g	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr14	34951361	34951362	chr14:34951362:A:G	rs8004440	A	G	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr14	34971473	34971474	chr14:34971474:A:C	rs12893021	A	C	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr14	35040820	35040821	chr14:35040821:T:G	rs77943027	T	G	T	Sox3.mouse_HMG_1	5	1	-	6.820425233954509	0.00728037966242423	CAAAAATTATATTGTAT
chr14	35224819	35224820	chr14:35224820:A:G	rs11847715	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr14	35509896	35509897	chr14:35509897:C:G	rs17103371	C	G	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr14	35875609	35875610	chr14:35875610:A:G	rs11625109	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.977809773225044	-1.6682809964038756	TAACAATGCCATTTTCA
chr14	36114652	36114653	chr14:36114653:T:G	rs7151595	T	G	G	Sox3.mouse_HMG_1	5	1	-	5.053184266344349	-1.7599605879477371	GGACAATACAATTTTTT
chr14	36114669	36114670	chr14:36114670:T:G	rs7151738	T	G	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr14	36318939	36318940	chr14:36318940:G:A	rs75495968	G	A	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr14	36495538	36495539	chr14:36495539:C:T	rs986877	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr14	36626454	36626455	chr14:36626455:A:G	rs76188354	A	G	A	Sox3.mouse_HMG_1	5	1	+	0.40101548954009614	-6.32511798776236	CAGCAATGCTGGTGTTC
chr14	36673763	36673764	chr14:36673764:C:A	rs17176643	C	A	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr14	36881445	36881446	chr14:36881446:C:T	rs4900639	C	T	C	Sox3.mouse_HMG_1	7	1	-	5.570102797987812	5.074032478210501	AAAAAAGGATATTGTTG
chr14	36911437	36911438	chr14:36911438:T:C	rs712390	T	C	C	Sox3.mouse_HMG_1	9	1	-	3.252140738856689	-1.330858880864642	CAGGAATACAATTGTTG
chr14	37048122	37048123	chr14:37048123:T:C	rs75700775	T	C	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr14	37131461	37131462	chr14:37131462:T:C	rs7147904	T	C	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr14	37174843	37174844	chr14:37174844:A:G	rs72669588	A	G	a	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr14	37466585	37466586	chr14:37466586:G:A	rs10134469	G	A	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr14	37709728	37709729	chr14:37709729:C:T	rs8010815	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr14	37709734	37709735	chr14:37709735:C:G	rs8010816	C	G	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr14	38186253	38186254	chr14:38186254:T:A	rs2803896	T	A	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr14	38298236	38298237	chr14:38298237:G:A	rs1168428	G	A	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr14	38330591	38330592	chr14:38330592:T:C	rs1183883	T	C	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr14	38330614	38330615	chr14:38330615:G:T	rs1183884	G	T	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr14	38576867	38576868	chr14:38576868:T:G	rs8023249	T	G	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr14	38723437	38723438	chr14:38723438:G:A	rs59566391	G	A	G	Sox3.mouse_HMG_1	3	1	-	9.094757988837413	3.1119818707030906	CAACAATGACAGTGGTG
chr14	39090839	39090840	chr14:39090840:T:A	rs10134166	T	A	T	Sox3.mouse_HMG_1	2	1	+	3.8330266557327395	9.735113391689504	GATCAATGCCCTTGTTA
chr14	39390957	39390958	chr14:39390958:A:G	rs73283442	A	G	A	Sox3.mouse_HMG_1	14	1	-	2.166619334988497	-3.9432715802602103	GGACACTGGTATTGTAG
chr14	39390984	39390985	chr14:39390985:C:T	rs34173090	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr14	39631855	39631856	chr14:39631856:A:G	rs1956151	A	G	A	Sox3.mouse_HMG_1	15	1	+	3.3233109064228463	2.253735670609282	AAACAAACTTATTGTAT
chr14	42096756	42096757	chr14:42096757:G:A	rs1763243	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr14	42269310	42269311	chr14:42269311:A:G	rs8008074	A	G	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr14	42269313	42269314	chr14:42269314:A:G	rs116544256	A	G	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr14	42365202	42365203	chr14:42365203:T:C	rs11620983	T	C	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr14	42541343	42541344	chr14:42541344:T:C	rs2062471	T	C	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr14	42572148	42572149	chr14:42572149:C:T	rs61991373	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr14	43139622	43139623	chr14:43139623:T:C	rs28417648	T	C	T	Sox3.mouse_HMG_1	2	1	-	0.4557081163754974	-3.9522268626049644	AAACGTTAACATTGTGG
chr14	43399708	43399709	chr14:43399709:G:A	rs7145059	G	A	A	Sox3.mouse_HMG_1	13	1	+	4.61372240717124	-1.494383382854677	GTACAAGGAAATTGTTG
chr14	44099769	44099770	chr14:44099770:A:G	rs1955992	A	G	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr14	44137575	44137576	chr14:44137576:T:C	rs10139865	T	C	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr14	46057943	46057944	chr14:46057944:G:A	rs17116885	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr14	46747262	46747263	chr14:46747263:T:C	rs17744004	T	C	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr14	46914111	46914112	chr14:46914112:A:G	rs3007120	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr14	47266815	47266816	chr14:47266816:A:G	rs17575074	A	G	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr14	47269878	47269879	chr14:47269879:A:G	rs75294542	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr14	47442152	47442153	chr14:47442153:G:A	chr14:47442153:G:A	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr14	47447170	47447171	chr14:47447171:T:G	rs10141117	T	G	T	Sox3.mouse_HMG_1	16	1	+	5.766568940726131	4.800717299969019	TAGCAATAAAACTGTTT
chr14	47481057	47481058	chr14:47481058:C:T	rs12436176	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr14	47584825	47584826	chr14:47584826:C:T	rs17760091	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr14	48268145	48268146	chr14:48268146:T:C	rs12435020	T	C	C	Sox3.mouse_HMG_1	4	1	-	3.4942162649384834	-3.318108827038756	AACTAATGACATTGTCT
chr14	48289213	48289214	chr14:48289214:C:G	rs1620753	C	G	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr14	48289221	48289222	chr14:48289222:A:G	rs1769514	A	G	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr14	49852419	49852420	chr14:49852420:G:A	rs76942979	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr14	50160666	50160667	chr14:50160667:G:A	rs7153547	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr14	50270006	50270007	chr14:50270007:C:T	rs2153553	C	T	C	Sox3.mouse_HMG_1	9	1	+	2.7942111044850844	2.7585049796005165	GAGCAATTACCGTGTTA
chr14	50358235	50358236	chr14:50358236:T:C	rs11157738	T	C	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr14	50667544	50667545	chr14:50667545:T:C	rs73293714	T	C	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr14	50667570	50667571	chr14:50667571:T:A	rs999402010	T	A	T	Sox3.mouse_HMG_1	12	1	+	6.123423257662726	0.5352311840296146	AAGCAATTTAAATGTTT
chr14	50732898	50732899	chr14:50732899:A:G	rs2984268	A	G	A	Sox3.mouse_HMG_1	10	1	+	1.525717743266394	-5.3825274157049465	GGCCAATAACACTGTTT
chr14	51078676	51078677	chr14:51078677:T:G	rs74244447	T	G	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr14	51398046	51398047	chr14:51398047:A:T	rs140423027	A	T	A	Sox3.mouse_HMG_1	11	1	-	2.582656133946815	-3.279799959959812	GACCAAAAAAATTGTTG
chr14	51398054	51398055	chr14:51398055:G:T	rs28667624	G	T	T	Sox3.mouse_HMG_1	3	1	-	2.582656133946815	-4.142057328916885	GACCAAAAAAATTGTTG
chr14	51444499	51444500	chr14:51444500:A:G	rs7146882	A	G	A	Sox3.mouse_HMG_1	6	1	-	1.2825332235705367	-5.3635575460583835	TAACAATGGATTCGTTA
chr14	51526018	51526019	chr14:51526019:T:G	rs8022389	T	G	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr14	51609290	51609291	chr14:51609291:C:T	rs1956580	C	T	T	Sox3.mouse_HMG_1	4	1	-	5.019807022146083	11.83213211412332	CAACGATAATATTGATG
chr14	51609291	51609292	chr14:51609292:G:A	rs7153647	G	A	A	Sox3.mouse_HMG_1	3	1	-	5.019807022146083	-0.9629690959882373	CAACGATAATATTGATG
chr14	51789175	51789176	chr14:51789176:A:G	rs8013076	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr14	52000999	52001000	chr14:52001000:A:G	rs12881786	A	G	A	Sox3.mouse_HMG_1	8	1	+	4.515617255360792	3.4892037803501568	AAACAATAACATAATAT
chr14	52126236	52126237	chr14:52126237:A:G	rs190237882	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.449454033151389	-1.6080020758089635	GAACTATGGAATAGTTT
chr14	52287186	52287187	chr14:52287187:T:C	rs17125289	T	C	T	Sox3.mouse_HMG_1	4	1	+	4.8440585590520655	4.433053270568285	TAACTATGACACTGTTG
chr14	52299938	52299939	chr14:52299939:A:G	rs28547950	A	G	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr14	52938051	52938052	chr14:52938052:C:A	rs8011220	C	A	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr14	53039690	53039691	chr14:53039691:T:C	rs10151030	T	C	T	Sox3.mouse_HMG_1	11	1	+	5.153251182881956	-0.904204926078397	TAACAAAAATATAGTTT
chr14	53389331	53389332	chr14:53389332:T:A	rs61986060	T	A	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr14	53525789	53525790	chr14:53525790:A:G	rs117633236	A	G	A	Sox3.mouse_HMG_1	6	1	-	5.287413210521748	-1.3586775591071703	AATCAATAGTACTGTTA
chr14	53883257	53883258	chr14:53883258:G:A	rs11625034	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr14	54312412	54312413	chr14:54312413:T:C	rs751148248	T	C	T	Sox3.mouse_HMG_1	0	1	-	0.6308911137400771	-0.7419255517214624	AAGCAGTGGCAGTGATT
chr14	54347331	54347332	chr14:54347332:G:A	rs117908503	G	A	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr14	54364822	54364823	chr14:54364823:A:C	rs7143990	A	C	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr14	54419656	54419657	chr14:54419657:G:A	rs4251676	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr14	54435569	54435570	chr14:54435570:C:T	rs79144186	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr14	54594055	54594056	chr14:54594056:C:T	rs137941593	C	T	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr14	54600547	54600548	chr14:54600548:C:T	rs8016776	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr14	54640865	54640866	chr14:54640866:C:A	rs116866540	C	A	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr14	54773957	54773958	chr14:54773958:A:T	rs148559871	A	T	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr14	55028480	55028481	chr14:55028481:A:T	rs1187876	A	T	A	Sox3.mouse_HMG_1	14	1	-	8.016671627102808	2.731194278407716	AGCCAATGATATTGTTA
chr14	55063401	55063402	chr14:55063402:T:C	rs3742564	T	C	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr14	55123808	55123809	chr14:55123809:T:G	rs141322146	T	G	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr14	55152592	55152593	chr14:55152593:A:G	rs15870	A	G	.	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr14	55349891	55349892	chr14:55349892:T:C	rs28716725	T	C	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr14	55446070	55446071	chr14:55446071:T:A	rs4901568	T	A	T	Sox3.mouse_HMG_1	14	1	+	5.688637623982465	0.4031602752873728	TAACAATTTAAGAGTTG
chr14	55543387	55543388	chr14:55543388:C:T	chr14:55543388:C:T	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr14	56127068	56127069	chr14:56127069:A:G	rs17761563	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr14	56211289	56211290	chr14:56211290:A:G	rs17832597	A	G	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr14	56585792	56585793	chr14:56585793:G:T	rs3737171	G	T	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr14	56892057	56892058	chr14:56892058:G:A	rs7148711	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr14	57119978	57119979	chr14:57119979:C:T	rs2154209	C	T	T	Sox3.mouse_HMG_1	3	1	+	6.140544756390389	0.15776863825606768	AAACAAGGAAATTGTCA
chr14	57512239	57512240	chr14:57512240:C:T	rs398723	C	T	T	Sox3.mouse_HMG_1	9	1	+	4.318420838070004	4.2827147131854355	GAAAAATTACATTGATG
chr14	57849201	57849202	chr14:57849202:C:T	rs2010213	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr14	58129522	58129523	chr14:58129523:C:T	rs36051876	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr14	58300141	58300142	chr14:58300142:T:C	chr14:58300142:T:C	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr14	58576399	58576400	chr14:58576400:A:G	rs989971	A	G	G	Sox3.mouse_HMG_1	8	1	+	4.383003841626629	3.3565903666159937	TAAAAATGACATTCTTG
chr14	58625862	58625863	chr14:58625863:G:C	rs128016	G	C	G	Sox3.mouse_HMG_1	11	1	+	2.2906206863529217	-1.6388567557465512	CAAGAATTTTAGTGTAA
chr14	59015921	59015922	chr14:59015922:T:G	rs7146482	T	G	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr14	59026160	59026161	chr14:59026161:T:C	rs4901885	T	C	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr14	59096564	59096565	chr14:59096565:G:T	chr14:59096565:G:T	G	T	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr14	59096566	59096567	chr14:59096567:G:T	rs12881026	G	T	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr14	59096586	59096587	chr14:59096587:G:A	rs885355	G	A	A	Sox3.mouse_HMG_1	3	1	-	1.0946005654628812	-4.88817555267144	AAACGATGACAGGGTTC
chr14	59148529	59148530	chr14:59148530:T:A	rs774818785	T	A	T	Sox3.mouse_HMG_1	15	1	-	1.2921944742026295	4.7890380959951	GAACAAAGGCATTATAT
chr14	59309002	59309003	chr14:59309003:C:G	rs8020957	C	G	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr14	59419808	59419809	chr14:59419809:C:T	rs61450782	C	T	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr14	59433396	59433397	chr14:59433397:G:A	rs17255752	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr14	59475646	59475647	chr14:59475647:C:T	rs1272909	C	T	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr14	59512182	59512183	chr14:59512183:A:C	rs2349454	A	C	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr14	59679629	59679630	chr14:59679630:C:T	rs1952042	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr14	59870203	59870204	chr14:59870204:G:A	rs2145797	G	A	G	Sox3.mouse_HMG_1	0	1	+	9.19173258490084	10.564549250362381	GAAAAATAAAATTGTTG
chr14	60328402	60328403	chr14:60328403:A:G	rs4901978	A	G	G	Sox3.mouse_HMG_1	7	1	+	1.7373023805957595	2.2333727003730703	GGTCAATAACATTTTTT
chr14	60735994	60735995	chr14:60735995:G:C	rs79994010	G	C	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr14	61106340	61106341	chr14:61106341:G:A	rs35652546	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr14	61226343	61226344	chr14:61226344:C:T	rs6573375	C	T	C	Sox3.mouse_HMG_1	13	1	-	2.907383105943832	-3.2007226840820837	GAATAATATAATCGTTG
chr14	61488385	61488386	chr14:61488386:G:A	rs72712345	G	A	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr14	61517368	61517369	chr14:61517369:A:G	rs1091680	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr14	61558376	61558377	chr14:61558377:G:C	rs78462949	G	C	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr14	61860579	61860580	chr14:61860580:G:A	rs17099284	G	A	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr14	61861837	61861838	chr14:61861838:C:T	rs73256479	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr14	61909985	61909986	chr14:61909986:T:C	rs217634	T	C	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr14	61911926	61911927	chr14:61911927:C:G	rs1660655	C	G	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr14	62272129	62272130	chr14:62272130:A:G	rs1174545614	A	G	A	Sox3.mouse_HMG_1	5	1	+	7.426978805343647	0.7008453280411912	ATGCAATATTAGTGTTT
chr14	62621872	62621873	chr14:62621873:A:G	rs2029442	A	G	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr14	63042454	63042455	chr14:63042455:G:A	rs1956673	G	A	A	Sox3.mouse_HMG_1	8	1	+	4.593719032635535	5.620132507646171	AGAAAATGGTATTGTAT
chr14	64045214	64045215	chr14:64045215:C:G	rs4617770	C	G	C	Sox3.mouse_HMG_1	11	1	+	3.821208203905344	7.750685646004816	AAACAATTAAACTTTTG
chr14	64082920	64082921	chr14:64082921:C:T	rs10129174	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr14	64189446	64189447	chr14:64189447:T:C	rs872227	T	C	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr14	64666882	64666883	chr14:64666883:G:C	rs12432551	G	C	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr14	64666918	64666919	chr14:64666919:G:T	rs8010807	G	T	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr14	64668162	64668163	chr14:64668163:G:A	rs74056372	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr14	64880930	64880931	chr14:64880931:C:T	rs61012404	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr14	65244429	65244430	chr14:65244430:T:C	rs1256488	T	C	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr14	65412190	65412191	chr14:65412191:C:T	rs1953417	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr14	65850361	65850362	chr14:65850362:C:T	rs78779286	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr14	65850393	65850394	chr14:65850394:G:T	rs78935537	G	T	G	Sox3.mouse_HMG_1	16	1	+	3.686861426567551	4.6527130673246635	AAACAAGGCAACTGTTG
chr14	65925679	65925680	chr14:65925680:T:G	rs2318309	T	G	T	Sox3.mouse_HMG_1	0	1	-	2.1573053728633838	0.567713860511184	AAATAAGACCAGTGTTA
chr14	65976777	65976778	chr14:65976778:A:G	rs1663330	A	G	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr14	66269117	66269118	chr14:66269118:G:A	rs55706614	G	A	G	Sox3.mouse_HMG_1	9	1	-	2.7459821774435285	2.7102760525589606	AGACAATGACACTATTG
chr14	66611493	66611494	chr14:66611494:T:C	rs8010110	T	C	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr14	66824435	66824436	chr14:66824436:A:G	rs3784074	A	G	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr14	66824467	66824468	chr14:66824468:T:C	rs3784075	T	C	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr14	66846896	66846897	chr14:66846897:A:G	rs143068069	A	G	A	Sox3.mouse_HMG_1	6	1	-	2.492229587037935	-4.153861182590983	GAACATTTTCATTATTG
chr14	66917425	66917426	chr14:66917426:C:A	rs7156081	C	A	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr14	67010929	67010930	chr14:67010930:A:G	rs1955606	A	G	G	Sox3.mouse_HMG_1	8	1	+	13.296374026493192	12.269960551482557	AAACATTGACATTGTTT
chr14	67440399	67440400	chr14:67440400:T:C	rs755782	T	C	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr14	67977744	67977745	chr14:67977745:A:G	rs12433779	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr14	68144530	68144531	chr14:68144531:T:C	rs2767363	T	C	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr14	68377471	68377472	chr14:68377472:A:T	rs12432583	A	T	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr14	68611356	68611357	chr14:68611357:A:C	rs17834977	A	C	A	Sox3.mouse_HMG_1	16	1	-	1.164943970358228	0.1990923296011155	AAACCATGACATCCTTT
chr14	68694456	68694457	chr14:68694457:T:C	rs17106154	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.8092214189867506	-3.916912058315705	AGTCAATTGTATTGTGT
chr14	68717507	68717508	chr14:68717508:A:G	rs381336	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr14	68772079	68772080	chr14:68772080:C:T	rs72731539	C	T	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr14	68798846	68798847	chr14:68798847:C:A	rs8022092	C	A	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr14	68939767	68939768	chr14:68939768:A:C	rs78729034	A	C	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr14	69312509	69312510	chr14:69312510:A:G	rs897327	A	G	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr14	69593254	69593255	chr14:69593255:C:T	rs139074889	C	T	c	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr14	69773385	69773386	chr14:69773386:C:T	rs8013586	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr14	69773405	69773406	chr14:69773406:C:G	rs8013598	C	G	G	Sox3.mouse_HMG_1	0	1	-	4.4456297526015796	4.22885490571092	GAACAGTGACAGTGTGG
chr14	70003265	70003266	chr14:70003266:A:T	rs1459702	A	T	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr14	70092990	70092991	chr14:70092991:A:T	rs1544870	A	T	A	Sox3.mouse_HMG_1	0	1	+	10.870277466004337	8.847123140688092	AAACATTGGCATTGTTA
chr14	70399602	70399603	chr14:70399603:A:G	rs2332372	A	G	a	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr14	70709300	70709301	chr14:70709301:C:T	rs28550295	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr14	70785679	70785680	chr14:70785680:T:C	rs57843652	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr14	70785693	70785694	chr14:70785694:T:C	rs143859497	T	C	T	Sox3.mouse_HMG_1	10	1	-	1.168854263498176	-5.7393908954731625	AACCATTGACATTGTCA
chr14	70817694	70817695	chr14:70817695:A:G	rs74697512	A	G	A	Sox3.mouse_HMG_1	3	1	-	2.922721331309395	8.905497449443716	AAATATTTAAATTGTTA
chr14	71149740	71149741	chr14:71149741:A:G	rs7159745	A	G	G	Sox3.mouse_HMG_1	1	1	+	0.9778695221676799	-3.3495638212350163	GAACTAATACAGTGTTG
chr14	71291283	71291284	chr14:71291284:C:T	rs141553727	C	T	C	Sox3.mouse_HMG_1	16	1	-	1.3472149372595943	0.9133834925384872	TAACTATGACACTGTAG
chr14	71592833	71592834	chr14:71592834:G:A	rs3784064	G	A	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr14	71803908	71803909	chr14:71803909:A:T	rs1205104	A	T	A	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr14	71892179	71892180	chr14:71892180:A:G	rs67086512	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr14	72164098	72164099	chr14:72164099:A:G	rs12896782	A	G	A	Sox3.mouse_HMG_1	5	1	+	0.2357900535994636	-6.490343423702993	CAGCAAGGGGATTGTTT
chr14	72825469	72825470	chr14:72825470:A:G	rs4903068	A	G	G	Sox3.mouse_HMG_1	8	1	-	1.5146205207405825	1.2018812958300407	AAACAATTTGAGTGTGC
chr14	73040677	73040678	chr14:73040678:C:A	rs7140377	C	A	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr14	73040684	73040685	chr14:73040685:C:A	rs12588579	C	A	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr14	73279881	73279882	chr14:73279882:T:C	rs177379	T	C	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr14	73784099	73784100	chr14:73784100:A:G	rs78078433	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr14	74062729	74062730	chr14:74062730:A:G	rs75646425	A	G	A	Sox3.mouse_HMG_1	16	1	+	2.75361947155287	3.1874509162739773	ATGCAATCCCATTGTTA
chr14	74254657	74254658	chr14:74254658:T:C	rs10150826	T	C	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr14	74527897	74527898	chr14:74527898:G:A	rs7149562	G	A	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr14	75040821	75040822	chr14:75040822:C:T	rs12879542	C	T	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr14	75176787	75176788	chr14:75176788:A:G	rs560418863	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr14	75176823	75176824	chr14:75176824:T:C	rs1197952429	T	C	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr14	75289932	75289933	chr14:75289933:G:A	rs10144025	G	A	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr14	75323731	75323732	chr14:75323732:G:A	rs10146409	G	A	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr14	75644288	75644289	chr14:75644289:C:T	rs10150189	C	T	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr14	75748232	75748233	chr14:75748233:A:G	rs534175396	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr14	76185320	76185321	chr14:76185321:G:A	rs11848148	G	A	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr14	76320867	76320868	chr14:76320868:C:G	rs12880948	C	G	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr14	76651374	76651375	chr14:76651375:T:C	rs1676291	T	C	T	Sox3.mouse_HMG_1	7	1	-	3.8258242137959657	4.321894533573277	CAGCAACATAATTGTTG
chr14	76651378	76651379	chr14:76651379:G:A	rs1642843	G	A	G	Sox3.mouse_HMG_1	3	1	-	3.8258242137959657	-2.156951904338358	CAGCAACATAATTGTTG
chr14	76720943	76720944	chr14:76720944:G:T	rs10137647	G	T	T	Sox3.mouse_HMG_1	3	1	-	1.6689071329587617	-5.05580632990494	TTACAATGCAGGTGTTT
chr14	76881568	76881569	chr14:76881569:A:G	rs12433447	A	G	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr14	76910529	76910530	chr14:76910530:G:A	rs72627179	G	A	c	Sox3.mouse_HMG_1	15	1	-	2.1018130581533607	6.4043148559488445	AAACAATGTCATAGGCG
chr14	77023787	77023788	chr14:77023788:G:A	rs145192776	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr14	77296528	77296529	chr14:77296529:C:T	rs3783986	C	T	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr14	77596650	77596651	chr14:77596651:C:T	rs34278364	C	T	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr14	77615766	77615767	chr14:77615767:T:C	rs176906	T	C	T	Sox3.mouse_HMG_1	12	1	+	2.3205021500984553	-3.885963435119396	AAACAATCCCCTTGTGT
chr14	79193870	79193871	chr14:79193871:C:G	chr14:79193871:C:G	C	G	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr14	79597590	79597591	chr14:79597591:T:A	rs2552415	T	A	T	Sox3.mouse_HMG_1	2	1	-	4.713216134164759	-1.188870601792005	CAACAATAATAATATTA
chr14	80095885	80095886	chr14:80095886:C:T	rs148685615	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr14	80173828	80173829	chr14:80173829:C:G	rs225005	C	G	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr14	80953962	80953963	chr14:80953963:A:G	rs7154269	A	G	G	Sox3.mouse_HMG_1	15	1	+	5.088389174178656	4.018813938365092	TAACAATACCATGGTAA
chr14	80957773	80957774	chr14:80957774:T:G	rs2268451	T	G	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr14	80987517	80987518	chr14:80987518:A:G	rs72693081	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr14	81034253	81034254	chr14:81034254:G:T	rs12323621	G	T	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr14	81055054	81055055	chr14:81055055:G:C	rs28750397	G	C	C	Sox3.mouse_HMG_1	12	1	+	0.3533035536844961	0.7149660391342672	AAAAAATGGCATGGTGG
chr14	81120898	81120899	chr14:81120899:G:A	rs72691609	G	A	G	Sox3.mouse_HMG_1	13	1	+	4.42905269824049	-1.679053091785426	AAACAATAAAAGAGCTT
chr14	81435270	81435271	chr14:81435271:T:C	rs12896506	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr14	81449284	81449285	chr14:81449285:C:T	rs191185473	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr14	81594672	81594673	chr14:81594673:A:G	rs76004450	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr14	81794591	81794592	chr14:81794592:T:A	rs75477980	T	A	T	Sox3.mouse_HMG_1	7	1	-	2.4027529376634646	1.3612741526986194	CAGGAATATAAGTGTTT
chr14	82123281	82123282	chr14:82123282:A:C	rs35647784	A	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr14	82385096	82385097	chr14:82385097:T:A	rs73354976	T	A	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr14	82421394	82421395	chr14:82421395:C:T	rs17668144	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr14	82421401	82421402	chr14:82421402:T:G	rs1023359525	T	G	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr14	82898239	82898240	chr14:82898240:A:G	rs72701279	A	G	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr14	82988140	82988141	chr14:82988141:G:A	rs1263459	G	A	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr14	83158372	83158373	chr14:83158373:T:C	rs10149498	T	C	T	Sox3.mouse_HMG_1	16	1	-	1.8563091910612084	2.2901406357823153	GATCAGTGTCAGTGTTA
chr14	84006846	84006847	chr14:84006847:C:T	chr14:84006847:C:T	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr14	84132090	84132091	chr14:84132091:A:G	rs1610166	A	G	G	Sox3.mouse_HMG_1	2	1	+	2.912679642382827	-1.4952553365976338	AAACAAATAAATTGGTG
chr14	84251120	84251121	chr14:84251121:A:T	chr14:84251121:A:T	A	T	A	Sox3.mouse_HMG_1	11	1	-	7.302995118866323	1.4405390249596963	AAACAATAAGATTTTTT
chr14	84312948	84312949	chr14:84312949:T:C	rs10137608	T	C	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr14	84963452	84963453	chr14:84963453:G:A	rs1480417	G	A	A	Sox3.mouse_HMG_1	11	1	+	4.343734146098651	0.6092567190529039	ACACAATTTTAGTGTCA
chr14	84963470	84963471	chr14:84963471:G:A	rs1480418	G	A	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr14	85042277	85042278	chr14:85042278:T:C	rs17740194	T	C	T	Sox3.mouse_HMG_1	6	1	+	5.491027544873658	-1.1550632247552608	GAACAATGGCATCCTTT
chr14	85241571	85241572	chr14:85241572:A:G	rs7158899	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr14	85241579	85241580	chr14:85241580:T:C	rs1667504	T	C	C	Sox3.mouse_HMG_1	10	1	-	4.975537039903303	-1.9327081190680353	AAGCAATTAAAGTGTCA
chr14	85276433	85276434	chr14:85276434:C:A	rs11847247	C	A	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr14	85567029	85567030	chr14:85567030:G:T	rs75371143	G	T	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr14	85851838	85851839	chr14:85851839:C:A	rs8019569	C	A	A	Sox3.mouse_HMG_1	3	1	+	10.56832981308345	3.843616350219752	GAACAGTTACATTGTTT
chr14	85912328	85912329	chr14:85912329:T:C	rs189187426	T	C	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr14	86619874	86619875	chr14:86619875:T:C	rs8013912	T	C	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr14	86787307	86787308	chr14:86787308:G:T	rs67979768	G	T	G	Sox3.mouse_HMG_1	3	1	-	1.0056602146749438	-5.719053248188757	GAACAAAGAAAATGTTC
chr14	87130711	87130712	chr14:87130712:G:C	rs11627845	G	C	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr14	87402553	87402554	chr14:87402554:G:T	rs9323805	G	T	T	Sox3.mouse_HMG_1	0	1	-	1.1498388882199988	2.739430400572195	CAACAATGCGAGTGTGC
chr14	88331703	88331704	chr14:88331704:G:A	rs12433739	G	A	G	Sox3.mouse_HMG_1	11	1	-	1.5278933293912482	7.585349438351601	GAACAAAGATACTGTCT
chr14	89127905	89127906	chr14:89127906:T:A	rs116469753	T	A	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr14	89241174	89241175	chr14:89241175:C:T	rs11504649	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr14	89392403	89392404	chr14:89392404:C:T	rs11159907	C	T	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr14	89516109	89516110	chr14:89516110:T:C	rs436395	T	C	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr14	89516148	89516149	chr14:89516149:C:A	rs380925	C	A	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr14	89532035	89532036	chr14:89532036:T:C	rs1756303	T	C	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr14	89551102	89551103	chr14:89551103:G:A	rs17717812	G	A	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr14	89775868	89775869	chr14:89775869:A:G	rs7161101	A	G	A	Sox3.mouse_HMG_1	11	1	-	2.2177367653986035	-3.8397193435617485	AAAAAATGGAATTGAAT
chr14	89872293	89872294	chr14:89872294:G:A	rs117884592	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr14	89915242	89915243	chr14:89915243:A:G	rs4445834	A	G	G	Sox3.mouse_HMG_1	1	1	+	4.898888639902613	0.5714552964999222	GACCAATGACATTATTA
chr14	89973188	89973189	chr14:89973189:C:A	rs35787421	C	A	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr14	90137704	90137705	chr14:90137705:A:C	rs78293127	A	C	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr14	90423933	90423934	chr14:90423934:C:A	rs2110115	C	A	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr14	90760868	90760869	chr14:90760869:C:G	rs77719699	C	G	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr14	91356117	91356118	chr14:91356118:C:T	rs61988409	C	T	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr14	91410992	91410993	chr14:91410993:G:C	rs534408767	G	C	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr14	91834275	91834276	chr14:91834276:T:G	rs11848727	T	G	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr14	91918451	91918452	chr14:91918452:C:T	rs149140634	C	T	C	Sox3.mouse_HMG_1	8	1	-	7.087533677418728	8.113947152429365	AAATAATGGCATTCTTT
chr14	92348481	92348482	chr14:92348482:G:A	rs11621207	G	A	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr14	92402123	92402124	chr14:92402124:C:A	rs12590749	C	A	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr14	92490831	92490832	chr14:92490832:T:C	rs61977322	T	C	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr14	92512276	92512277	chr14:92512277:T:C	rs74955265	T	C	T	Sox3.mouse_HMG_1	14	1	+	5.002113588100838	-1.1077773271478693	GAACAATACTACTCTTT
chr14	92524256	92524257	chr14:92524257:C:T	rs1952328	C	T	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr14	92747632	92747633	chr14:92747633:G:A	rs115138464	G	A	G	Sox3.mouse_HMG_1	8	1	-	5.908107597365276	6.220846822275818	GAACAGTTCCAGTGTTA
chr14	92863346	92863347	chr14:92863347:C:T	rs11622090	C	T	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr14	93201650	93201651	chr14:93201651:C:T	rs1263391	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr14	93369239	93369240	chr14:93369240:G:A	rs7142004	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr14	93897283	93897284	chr14:93897284:A:G	rs732910	A	G	A	Sox3.mouse_HMG_1	8	1	-	8.06183186306838	7.749092638157835	AAACAATGTCATTGGAA
chr14	93943210	93943211	chr14:93943211:T:C	rs78991601	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr14	93976108	93976109	chr14:93976109:C:T	rs4905125	C	T	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr14	93976125	93976126	chr14:93976126:C:A	rs193132680	C	A	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr14	94136535	94136536	chr14:94136536:G:A	rs927139	G	A	.	Sox3.mouse_HMG_1	3	1	-	2.7045138837091587	-3.2782622344251626	AAACATTAACAGGGTTA
chr14	94366695	94366696	chr14:94366696:T:C	rs1956172	T	C	-	Sox3.mouse_HMG_1	7	1	-	2.465340680747585	2.961411000524895	GGACAATACCATTCTCT
chr14	94452381	94452382	chr14:94452382:T:G	rs11845116	T	G	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr14	94466753	94466754	chr14:94466754:C:A	rs17825476	C	A	C	Sox3.mouse_HMG_1	14	1	-	4.3813893391661365	10.808038590948135	AAACAAAAGCATTGGTG
chr14	94480980	94480981	chr14:94480981:G:A	rs12434141	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr14	94655243	94655244	chr14:94655244:G:A	rs72696823	G	A	G	Sox3.mouse_HMG_1	8	1	-	1.1395855681281124	1.4523247930386547	CATCATTGCTATTGTAT
chr14	95052875	95052876	chr14:95052876:A:G	rs2353730	A	G	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr14	95057627	95057628	chr14:95057628:T:C	rs66771552	T	C	T	Sox3.mouse_HMG_1	4	1	-	5.6368240249059545	-1.1755010670712818	CAACAAAAGAAGTGTTG
chr14	95197714	95197715	chr14:95197715:C:A	rs116492775	C	A	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr14	95197715	95197716	chr14:95197716:C:T	rs116006302	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr14	95197734	95197735	chr14:95197735:C:T	rs114270165	C	T	T	Sox3.mouse_HMG_1	11	1	-	0.21091584592557266	-3.5235615811201746	CAACAATGACCGTGCTC
chr14	95255777	95255778	chr14:95255778:T:C	rs114031522	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr14	95522870	95522871	chr14:95522871:G:A	rs86990	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr14	95652790	95652791	chr14:95652791:T:C	rs1885421	T	C	T	Sox3.mouse_HMG_1	12	1	-	3.6319085938315467	2.6519725967970356	AAAGAATAAAAGAGTTT
chr14	95680118	95680119	chr14:95680119:G:C	rs1743513	G	C	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr14	95784361	95784362	chr14:95784362:T:G	rs963331726	T	G	T	Sox3.mouse_HMG_1	7	1	-	0.8805940068437159	-4.244027808303746	GAACAAAAGCAGTGGTG
chr14	95784377	95784378	chr14:95784378:A:G	rs74327424	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr14	96080471	96080472	chr14:96080472:G:A	rs11625438	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr14	96080485	96080486	chr14:96080486:C:A	rs11625376	C	A	A	Sox3.mouse_HMG_1	12	1	-	2.5664921983597964	9.134620269027417	AAACAATAGAAGGGTGA
chr14	96095422	96095423	chr14:96095423:G:T	rs79395064	G	T	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr14	96257558	96257559	chr14:96257559:A:G	rs61982614	A	G	A	Sox3.mouse_HMG_1	11	1	-	1.007098366303325	-5.050357742657028	GAGCACTGATATGGTTT
chr14	96271392	96271393	chr14:96271393:T:C	rs12895877	T	C	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr14	96409926	96409927	chr14:96409927:A:G	rs12100763	A	G	A	Sox3.mouse_HMG_1	11	1	+	3.404233954039673	7.138711381085419	TAACAATAGCAATGGTG
chr14	96634011	96634012	chr14:96634012:C:T	rs73355285	C	T	C	Sox3.mouse_HMG_1	3	1	+	2.5404564488896386	-3.4423196692446827	CTACAATAGCAGGGTTG
chr14	96648571	96648572	chr14:96648572:G:T	rs8021476	G	T	T	Sox3.mouse_HMG_1	8	1	+	2.497971104155413	2.704563340697516	AAACAGTGGCAGTGGTA
chr14	96694043	96694044	chr14:96694044:G:A	rs11160360	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr14	96806044	96806045	chr14:96806045:T:G	rs2224442	T	G	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr14	97097345	97097346	chr14:97097346:T:C	rs549252340	T	C	T	Sox3.mouse_HMG_1	10	1	-	0.6747188181303366	-6.233526340841004	GGCCAAGAACATTGTTT
chr14	97097375	97097376	chr14:97097376:G:C	rs17690356	G	C	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr14	97127880	97127881	chr14:97127881:C:T	rs2295133	C	T	C	Sox3.mouse_HMG_1	9	1	-	3.4680100831002942	8.051009702821627	AATCAATTCGAGTGTTT
chr14	97337046	97337047	chr14:97337047:G:A	rs147991665	G	A	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr14	97416963	97416964	chr14:97416964:A:G	rs11624413	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr14	97437283	97437284	chr14:97437284:A:T	rs2017891	A	T	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr14	97543367	97543368	chr14:97543368:G:A	rs947109899	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr14	97543386	97543387	chr14:97543387:A:C	rs117316387	A	C	A	Sox3.mouse_HMG_1	14	1	-	1.5400080166804897	-4.886641235101508	GGACAATGTGATTATTT
chr14	98170197	98170198	chr14:98170198:T:C	rs7155953	T	C	T	Sox3.mouse_HMG_1	13	1	+	2.909647444515766	3.170661269885385	AAACAAGTGAATTTTTT
chr14	98544377	98544378	chr14:98544378:C:T	rs553716820	C	T	C	Sox3.mouse_HMG_1	0	1	-	5.8146892139355995	7.187505879397138	GAACAATGACAGTGGAG
chr14	98578859	98578860	chr14:98578860:T:A	rs17097371	T	A	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr14	98592162	98592163	chr14:98592163:C:A	rs11623057	C	A	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr14	98682984	98682985	chr14:98682985:T:A	rs10133434	T	A	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr14	98791953	98791954	chr14:98791954:C:T	rs61981356	C	T	C	Sox3.mouse_HMG_1	7	1	-	1.116874142222088	0.6208038224447773	ACACAATGAGAGTGATT
chr14	98831015	98831016	chr14:98831016:T:C	rs139079242	T	C	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr14	98960974	98960975	chr14:98960975:G:T	rs59710286	G	T	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr14	99068385	99068386	chr14:99068386:T:G	rs807366	T	G	G	Sox3.mouse_HMG_1	8	1	+	1.890777925644468	1.684185689102364	CCACAATGTAAGTGATA
chr14	99262455	99262456	chr14:99262456:C:T	rs1078050	C	T	C	Sox3.mouse_HMG_1	13	1	-	2.236242670194319	-3.8718631198315965	AAACAATAATTCTGTGT
chr14	99319220	99319221	chr14:99319221:T:G	rs72702686	T	G	T	Sox3.mouse_HMG_1	2	1	-	0.49746161116562937	-5.9278732685556825	GGACAAGGCCATTGTGA
chr14	99428295	99428296	chr14:99428296:A:G	rs111699837	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr14	99708937	99708938	chr14:99708938:C:G	rs12434024	C	G	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr14	99865538	99865539	chr14:99865539:T:C	rs11160553	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr14	99899886	99899887	chr14:99899887:A:G	rs8015592	A	G	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr14	100415553	100415554	chr14:100415554:T:A	rs11160587	T	A	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr14	100426479	100426480	chr14:100426480:G:T	rs8017347	G	T	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr14	100604221	100604222	chr14:100604222:A:G	rs873076	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr14	100612436	100612437	chr14:100612437:T:G	rs12898185	T	G	T	Sox3.mouse_HMG_1	10	1	+	4.431625188033173	4.336315008228849	CAACAATGATTTTTTTG
chr14	100665264	100665265	chr14:100665265:A:G	rs151164367	A	G	A	Sox3.mouse_HMG_1	6	1	+	6.056640038477333	6.056640038477333	AAACAAATACATTGTCA
chr14	100665277	100665278	chr14:100665278:G:A	rs141375817	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr14	101155853	101155854	chr14:101155854:T:C	rs11625053	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr14	101232127	101232128	chr14:101232128:G:T	rs1763209	G	T	G	Sox3.mouse_HMG_1	7	1	-	2.66563465267024	7.790256467817701	AGACAATCGCCTTGTTT
chr14	101943921	101943922	chr14:101943922:C:A	rs4906168	C	A	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr14	102256558	102256559	chr14:102256559:G:A	rs148390046	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr14	102491838	102491839	chr14:102491839:C:T	rs12100607	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr14	102580021	102580022	chr14:102580022:C:T	rs116186895	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr14	102580022	102580023	chr14:102580023:G:A	rs940062510	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr14	102630014	102630015	chr14:102630015:T:C	rs9324049	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr14	103186629	103186630	chr14:103186630:C:T	rs151036716	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr14	103280834	103280835	chr14:103280835:C:G	rs11629325	C	G	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr14	103328598	103328599	chr14:103328599:G:A	rs34143771	G	A	g	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr14	103418953	103418954	chr14:103418954:A:G	rs35233301	A	G	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr14	103494288	103494289	chr14:103494289:C:T	rs4900580	C	T	c	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr14	103871122	103871123	chr14:103871123:T:C	rs78113926	T	C	T	Sox3.mouse_HMG_1	10	1	-	8.394990245497835	1.4867450865264964	GAGCAATGCCATTGTAA
chr14	104501416	104501417	chr14:104501417:C:T	rs118052338	C	T	c	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr14	104657642	104657643	chr14:104657643:C:T	rs1009423631	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr14	104708747	104708748	chr14:104708748:A:G	rs11850821	A	G	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr14	105418623	105418624	chr14:105418624:C:T	rs60264385	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr14	105612109	105612110	chr14:105612110:C:T	rs8011915	C	T	.	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr14	105847313	105847314	chr14:105847314:C:G	rs12586629	C	G	.	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr14	106355378	106355379	chr14:106355379:A:G	rs5029576	A	G	-	Sox3.mouse_HMG_1	9	1	+	2.1165687281824677	-2.4664308915388666	GAAAATTACAATTGTTT
chr14	106652583	106652584	chr14:106652584:T:C	rs11161000	T	C	c	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr15	17026689	17026690	chr15:17026690:G:A	rs911143370	G	A	.	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr15	17026693	17026694	chr15:17026694:G:C	rs1324431446	G	C	.	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr15	19787211	19787212	chr15:19787212:T:C	rs1241204559	T	C	.	Sox3.mouse_HMG_1	5	1	-	1.0750454262834785	-5.651088051018978	CAACAAAAAAAGAGTTG
chr15	20352038	20352039	chr15:20352039:G:A	rs535819497	G	A	g	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr15	20586412	20586413	chr15:20586413:A:G	rs71468603	A	G	a	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr15	20658973	20658974	chr15:20658974:A:G	rs7495665	A	G	a	Sox3.mouse_HMG_1	14	1	-	3.5475282948233295	-2.5623626204253775	AAATAATGACATTATGT
chr15	20661639	20661640	chr15:20661640:C:A	rs12442606	C	A	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr15	20669456	20669457	chr15:20669457:G:C	rs62000627	G	C	G	Sox3.mouse_HMG_1	13	1	+	2.58063704283411	-3.527468747191807	ATACAGTGGAAGTGTTA
chr15	20669469	20669470	chr15:20669470:A:C	rs11633771	A	C	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr15	21259963	21259964	chr15:21259964:T:C	rs28642802	T	C	.	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr15	22239331	22239332	chr15:22239332:G:A	rs147444408	G	A	g	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr15	22254867	22254868	chr15:22254868:A:G	rs7496788	A	G	a	Sox3.mouse_HMG_1	10	1	+	3.3719306098812085	-3.5363145490901298	GGGAAATGACATTGTTT
chr15	22772202	22772203	chr15:22772203:T:C	rs879200654	T	C	t	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr15	22774618	22774619	chr15:22774619:G:A	rs2347179	G	A	g	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr15	23096233	23096234	chr15:23096234:C:T	rs12591320	C	T	c	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr15	23485178	23485179	chr15:23485179:T:C	rs2345409	T	C	C	Sox3.mouse_HMG_1	4	1	+	2.7151231955029553	2.304117907019175	AAACTATTTTATTGAAT
chr15	24258523	24258524	chr15:24258524:T:G	rs17118728	T	G	g	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr15	24764922	24764923	chr15:24764923:C:A	rs1563098	C	A	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr15	24809699	24809700	chr15:24809700:C:T	rs2123682	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr15	25568804	25568805	chr15:25568805:A:G	rs2526571	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr15	25568815	25568816	chr15:25568816:C:T	rs77232739	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr15	25680047	25680048	chr15:25680048:T:C	rs3736186	T	C	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr15	25728737	25728738	chr15:25728738:C:A	rs11639427	C	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr15	25831559	25831560	chr15:25831560:A:G	rs74767497	A	G	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr15	25888826	25888827	chr15:25888827:A:G	rs2120748	A	G	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr15	26311947	26311948	chr15:26311948:C:T	rs78956791	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr15	26725080	26725081	chr15:26725081:A:G	rs60229432	A	G	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr15	26806404	26806405	chr15:26806405:T:C	rs4906911	T	C	C	Sox3.mouse_HMG_1	5	1	-	6.078211761614597	-0.6479217156878592	GAAAAATGCCATTGTAA
chr15	27127791	27127792	chr15:27127792:C:T	rs1012549	C	T	C	Sox3.mouse_HMG_1	10	1	+	6.406765443845729	6.158485919259977	TAACAATACACGTGTTT
chr15	27223295	27223296	chr15:27223296:G:A	rs34755423	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr15	27466404	27466405	chr15:27466405:T:G	rs8039959	T	G	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr15	27583699	27583700	chr15:27583700:C:T	rs2086039	C	T	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr15	27960182	27960183	chr15:27960183:A:G	rs56192849	A	G	A	Sox3.mouse_HMG_1	14	1	-	2.2551654245764228	-3.8547254906722843	GAGCAATTGCATTATAT
chr15	28457912	28457913	chr15:28457913:G:C	rs1823353	G	C	g	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr15	28462610	28462611	chr15:28462611:G:C	rs112827714	G	C	.	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr15	28955545	28955546	chr15:28955546:A:G	rs16954826	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.7539579928427567	-2.9721754844596995	AAGAAATGTTATTGTAG
chr15	28975847	28975848	chr15:28975848:C:G	rs75697070	C	G	C	Sox3.mouse_HMG_1	8	1	+	2.659353665263443	2.765500653631883	AAACAATACAAGTTTGA
chr15	28987590	28987591	chr15:28987591:C:G	rs751532073	C	G	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr15	29013169	29013170	chr15:29013170:A:G	rs12441482	A	G	G	Sox3.mouse_HMG_1	4	1	-	2.2500417855508803	1.8390364970671003	CAACTATGACATAGTAG
chr15	29033631	29033632	chr15:29033632:T:A	rs183967734	T	A	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr15	29474396	29474397	chr15:29474397:T:A	rs629561	T	A	A	Sox3.mouse_HMG_1	10	1	-	3.071684993621923	-3.7412499855450934	GAAGCATGACAGTGTTT
chr15	29544744	29544745	chr15:29544745:A:C	rs8040300	A	C	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr15	29544782	29544783	chr15:29544783:C:T	rs11636716	C	T	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr15	29610599	29610600	chr15:29610600:A:G	rs7161885	A	G	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr15	29686001	29686002	chr15:29686002:G:C	rs79991849	G	C	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr15	29880498	29880499	chr15:29880499:T:C	rs62014490	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.624127280323425	-4.1020061969790325	ACACTATGGTATTGTGT
chr15	29913531	29913532	chr15:29913532:C:T	rs4779672	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr15	29926162	29926163	chr15:29926163:T:C	rs1718991	T	C	T	Sox3.mouse_HMG_1	16	1	+	3.968073770267516	0.36627710464653385	AAGAAATAGAAGTGTTT
chr15	29978512	29978513	chr15:29978513:C:T	rs74541918	C	T	C	Sox3.mouse_HMG_1	6	1	-	3.202380300780881	3.202380300780881	AAACAAGGCAATTATTA
chr15	30065246	30065247	chr15:30065247:G:A	rs34384012	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr15	30492885	30492886	chr15:30492886:G:A	rs62017515	G	A	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr15	30828311	30828312	chr15:30828312:C:T	rs798131	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr15	30984737	30984738	chr15:30984738:C:T	rs182534448	C	T	C	Sox3.mouse_HMG_1	0	1	+	1.0508369188839495	0.6172741059199047	CAAGAATGAAAGTGCTG
chr15	31064221	31064222	chr15:31064222:T:C	rs4779814	T	C	T	Sox3.mouse_HMG_1	15	1	-	1.9840932400893485	0.9145180042757843	CAACAAGAACAGTGTAC
chr15	31235555	31235556	chr15:31235556:T:C	rs1370062	T	C	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr15	31407549	31407550	chr15:31407550:A:T	rs10152853	A	T	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr15	31463849	31463850	chr15:31463850:A:G	rs35605241	A	G	A	Sox3.mouse_HMG_1	16	1	-	1.6848244126737613	-1.916972252947221	GAGCAACGATACTGTTT
chr15	31463853	31463854	chr15:31463854:A:G	rs28533482	A	G	A	Sox3.mouse_HMG_1	12	1	-	1.6848244126737613	-4.521641172544091	GAGCAACGATACTGTTT
chr15	32125131	32125132	chr15:32125132:G:A	rs12916879	G	A	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr15	32728677	32728678	chr15:32728678:T:C	rs28617440	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr15	32838803	32838804	chr15:32838804:T:G	rs1264857905	T	G	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr15	32970535	32970536	chr15:32970536:T:C	rs8034555	T	C	C	Sox3.mouse_HMG_1	5	1	-	2.943941754522222	-3.782191722780235	TGACAATGACAGTGAAT
chr15	33292574	33292575	chr15:33292575:T:C	rs4415974	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr15	33454949	33454950	chr15:33454950:A:G	rs2676085	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr15	33964524	33964525	chr15:33964525:C:A	rs637055	C	A	C	Sox3.mouse_HMG_1	12	1	+	4.687445162299875	5.305718673884615	AAAAAATGCAATCGTTT
chr15	34018251	34018252	chr15:34018252:G:C	rs563833925	G	C	G	Sox3.mouse_HMG_1	1	1	+	4.54913725739385	3.2387157045354313	AGACAGTGATATTGTGT
chr15	34147557	34147558	chr15:34147558:T:C	rs75426827	T	C	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr15	34320557	34320558	chr15:34320558:C:T	rs17236840	C	T	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr15	34336965	34336966	chr15:34336966:G:A	rs73374493	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr15	34445906	34445907	chr15:34445907:C:T	rs1968326	C	T	.	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr15	34700475	34700476	chr15:34700476:T:C	rs7182634	T	C	T	Sox3.mouse_HMG_1	6	1	+	3.3226442151341256	-3.3234465544947915	GAACAATGCAATATTTG
chr15	34800787	34800788	chr15:34800788:C:G	rs62006140	C	G	C	Sox3.mouse_HMG_1	9	1	+	1.7249659415476843	-4.311678065002746	CAACCATGACAATGTCT
chr15	34920046	34920047	chr15:34920047:G:C	rs367567254	G	C	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr15	35218909	35218910	chr15:35218910:G:A	rs117866038	G	A	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr15	35308477	35308478	chr15:35308478:G:A	rs318335	G	A	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr15	35618538	35618539	chr15:35618539:T:C	rs16961336	T	C	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr15	35706126	35706127	chr15:35706127:A:G	rs1498583	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr15	35847204	35847205	chr15:35847205:T:C	rs2646780	T	C	T	Sox3.mouse_HMG_1	11	1	+	1.6539584759331332	-4.40349763302722	CAACCATGAAATTGAAT
chr15	36086678	36086679	chr15:36086679:G:A	rs8028954	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr15	36106834	36106835	chr15:36106835:A:G	rs12592136	A	G	A	Sox3.mouse_HMG_1	12	1	-	4.062959021265764	-2.1435065639520885	AAAGAATGTTAGTGATG
chr15	36160532	36160533	chr15:36160533:G:A	rs76194941	G	A	G	Sox3.mouse_HMG_1	3	1	-	2.186313757383758	-3.7964623607505628	GTACAATGTCATTTTGT
chr15	36160540	36160541	chr15:36160541:A:G	rs12903973	A	G	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr15	36416977	36416978	chr15:36416978:A:C	rs4924066	A	C	A	Sox3.mouse_HMG_1	5	1	+	0.9426795151002403	-5.870465339191846	CAAAAATGTTCGTGTTA
chr15	36428013	36428014	chr15:36428014:T:G	rs12438760	T	G	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr15	36481297	36481298	chr15:36481298:G:A	rs11633887	G	A	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr15	36483860	36483861	chr15:36483861:A:G	rs2167992	A	G	G	Sox3.mouse_HMG_1	4	1	+	7.191660468950374	0.3793353769731371	AAACAGTGATATTGATG
chr15	36728341	36728342	chr15:36728342:A:G	rs16963944	A	G	A	Sox3.mouse_HMG_1	12	1	-	3.2963197658652397	-2.910145819352612	GAACTATTTTAATGTTG
chr15	36758959	36758960	chr15:36758960:T:A	rs55681350	T	A	T	Sox3.mouse_HMG_1	14	1	+	2.1515983313268707	-3.133879017368221	AAATTATGAAATTGTCT
chr15	36758978	36758979	chr15:36758979:C:T	rs56365969	C	T	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr15	36782906	36782907	chr15:36782907:A:G	rs75855825	A	G	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr15	36952084	36952085	chr15:36952085:G:A	rs548208020	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr15	37017179	37017180	chr15:37017180:A:G	rs548796952	A	G	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr15	38050161	38050162	chr15:38050162:A:G	rs8033533	A	G	A	Sox3.mouse_HMG_1	14	1	-	5.946536774656904	-0.16335414059180425	TAACAATACTATTATAG
chr15	38164053	38164054	chr15:38164054:G:A	rs11073298	G	A	g	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr15	38175531	38175532	chr15:38175532:G:C	rs11855662	G	C	C	Sox3.mouse_HMG_1	4	1	+	2.923195224415947	3.010206601405576	GAACGATTTAATTGATT
chr15	38250684	38250685	chr15:38250685:G:C	rs77831012	G	C	G	Sox3.mouse_HMG_1	8	1	-	1.4407853986030545	1.546932386971494	AAACCATCCCATTGATT
chr15	38705702	38705703	chr15:38705703:C:T	rs903532	C	T	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr15	38746030	38746031	chr15:38746031:T:C	rs2002127	T	C	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr15	38789593	38789594	chr15:38789594:A:G	rs62007727	A	G	A	Sox3.mouse_HMG_1	9	1	+	3.2472895312848444	-1.3357100884364865	GAAAAATCTAATTGTTG
chr15	39204008	39204009	chr15:39204009:G:A	rs73383220	G	A	g	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr15	39365444	39365445	chr15:39365445:G:A	rs1470148	G	A	G	Sox3.mouse_HMG_1	11	1	+	2.8253485071331226	-0.9091289199126243	AGGCAATAAAAGTGTGT
chr15	39574469	39574470	chr15:39574470:T:G	rs28537569	T	G	T	Sox3.mouse_HMG_1	15	1	+	3.007999650667192	-1.5584192069388427	GAAAAATTAAATTCTTT
chr15	39618202	39618203	chr15:39618203:G:A	rs12908846	G	A	G	Sox3.mouse_HMG_1	15	1	-	2.684204961597988	6.9867067593934715	GAACAGTTAAAGTGTCT
chr15	39618229	39618230	chr15:39618230:A:G	rs10152640	A	G	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr15	39819956	39819957	chr15:39819957:A:G	rs676455	A	G	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr15	40522222	40522223	chr15:40522223:T:C	rs6492951	T	C	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr15	40755859	40755860	chr15:40755860:G:A	rs7175361	G	A	G	Sox3.mouse_HMG_1	13	1	+	9.822496324093846	3.714390534067931	TAACAATTTTATTGTGA
chr15	40823281	40823282	chr15:40823282:A:T	rs662796	A	T	A	Sox3.mouse_HMG_1	11	1	-	1.9882651066608272	-3.8741909872457994	CAACAAAAAAATTTTTA
chr15	41180507	41180508	chr15:41180508:G:A	rs139529251	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr15	41483191	41483192	chr15:41483192:G:C	rs78249706	G	C	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr15	42062048	42062049	chr15:42062049:A:T	rs776702	A	T	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr15	42107555	42107556	chr15:42107556:G:A	rs639227	G	A	G	Sox3.mouse_HMG_1	11	1	+	2.5776280968309035	-1.1568493302148442	GAACAATGAACGTATTT
chr15	43007488	43007489	chr15:43007489:T:C	rs1037990	T	C	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr15	43182061	43182062	chr15:43182062:C:G	rs551554714	C	G	c	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr15	44030204	44030205	chr15:44030205:T:A	rs79499380	T	A	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr15	44030205	44030206	chr15:44030206:A:T	rs11070418	A	T	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr15	44030206	44030207	chr15:44030207:C:A	rs1863600	C	A	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr15	44084427	44084428	chr15:44084428:T:A	rs113884811	T	A	A	Sox3.mouse_HMG_1	2	1	-	1.9430781832722608	-3.9590085526845034	CAACAATAATAGTATCC
chr15	44194040	44194041	chr15:44194041:G:C	rs2706465	G	C	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr15	44458670	44458671	chr15:44458671:C:T	rs748015073	C	T	C	Sox3.mouse_HMG_1	2	1	+	2.220438933920129	2.7436870776846765	AACGAATAGTAGTGTTG
chr15	44727913	44727914	chr15:44727914:A:G	rs7168090	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.2368005531058373	-3.4893329241966193	TAACAATTGTTTTGTGG
chr15	45139607	45139608	chr15:45139608:G:T	rs2271435	G	T	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr15	45200540	45200541	chr15:45200541:C:A	chr15:45200541:C:A	C	A	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr15	45542854	45542855	chr15:45542855:C:T	rs116331531	C	T	C	Sox3.mouse_HMG_1	3	1	+	1.8674295972682526	-4.115346520866067	AAACCATATCAGTGTGC
chr15	46015275	46015276	chr15:46015276:A:G	rs12908219	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr15	46232713	46232714	chr15:46232714:C:T	rs1560937	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr15	46232714	46232715	chr15:46232715:A:G	rs1560936	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr15	46232747	46232748	chr15:46232748:G:A	rs1560935	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr15	46595817	46595818	chr15:46595818:T:C	rs16957078	T	C	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr15	46606798	46606799	chr15:46606799:G:A	rs8041365	G	A	A	Sox3.mouse_HMG_1	13	1	+	1.7708631648104252	-4.337242625215491	AGACAAATATAGTGTAT
chr15	46715330	46715331	chr15:46715331:A:G	rs17268264	A	G	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr15	47049702	47049703	chr15:47049703:T:G	rs17346776	T	G	T	Sox3.mouse_HMG_1	8	1	-	2.485033321671385	1.3524728582923093	AAGGAATGATATTTTTT
chr15	47421929	47421930	chr15:47421930:C:A	rs59428292	C	A	C	Sox3.mouse_HMG_1	8	1	-	3.035304298381858	3.24189653492396	AGACAATAGAATTTTAT
chr15	47472973	47472974	chr15:47472974:A:C	chr15:47472974:A:C	A	C	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr15	47473908	47473909	chr15:47473909:T:C	rs79595882	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr15	47513814	47513815	chr15:47513815:T:C	rs1610098	T	C	C	Sox3.mouse_HMG_1	10	1	-	3.543483077531853	-3.364762081439485	AAACAATTTAAAAGTTA
chr15	47773289	47773290	chr15:47773290:C:T	rs1045688	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr15	47843366	47843367	chr15:47843367:C:T	rs785016	C	T	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr15	48385468	48385469	chr15:48385469:A:T	rs76667452	A	T	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr15	48452080	48452081	chr15:48452081:T:C	rs74318713	T	C	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr15	48553524	48553525	chr15:48553525:G:A	rs11857382	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr15	48765278	48765279	chr15:48765279:C:T	rs16952956	C	T	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr15	48859205	48859206	chr15:48859206:C:T	rs1974961	C	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr15	48861395	48861396	chr15:48861396:T:G	rs76622101	T	G	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr15	49248349	49248350	chr15:49248350:A:G	rs145341756	A	G	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr15	49620570	49620571	chr15:49620571:C:T	rs13329455	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr15	49689778	49689779	chr15:49689779:T:C	rs12905627	T	C	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr15	49815057	49815058	chr15:49815058:C:T	rs1848282	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr15	49815103	49815104	chr15:49815104:A:C	rs190824616	A	C	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr15	49962487	49962488	chr15:49962488:A:G	rs147936885	A	G	A	Sox3.mouse_HMG_1	5	1	+	4.72629322507502	-1.9998402522274326	AAACAATGCCAGTACTT
chr15	50392232	50392233	chr15:50392233:G:A	rs184062036	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr15	50925476	50925477	chr15:50925477:A:G	rs2306333	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr15	51076039	51076040	chr15:51076040:T:C	rs17522120	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr15	51204071	51204072	chr15:51204072:C:T	rs146169068	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr15	51263302	51263303	chr15:51263303:T:C	rs34258629	T	C	T	Sox3.mouse_HMG_1	5	1	+	2.000064487457184	2.0953746672615097	GAACATTGACATTGGAT
chr15	51322855	51322856	chr15:51322856:T:C	rs28757087	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr15	51576911	51576912	chr15:51576912:T:G	rs570422039	T	G	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr15	51672667	51672668	chr15:51672668:T:C	rs1378892	T	C	C	Sox3.mouse_HMG_1	8	1	+	1.6369819344704881	1.3242427095599458	GAGCAACGTTATTGATT
chr15	51879059	51879060	chr15:51879060:T:C	rs186215209	T	C	T	Sox3.mouse_HMG_1	11	1	+	5.566565465572247	-0.4908906433881053	TGGCAATGGAATTGTTA
chr15	51883478	51883479	chr15:51883479:A:T	rs2433217	A	T	A	Sox3.mouse_HMG_1	11	1	-	2.7076604201014414	-3.154795673805186	AAACAACACAATTTTTA
chr15	52206162	52206163	chr15:52206163:G:A	rs4776016	G	A	A	Sox3.mouse_HMG_1	9	1	-	6.410498441780236	6.374792316895668	GGACAATGACAGTGTGA
chr15	52213749	52213750	chr15:52213750:A:G	rs3794550	A	G	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr15	52233945	52233946	chr15:52233946:T:C	rs77859936	T	C	T	Sox3.mouse_HMG_1	2	1	-	3.876019392797055	-0.5319155861834055	AAACTATTAAACTGTTG
chr15	52735565	52735566	chr15:52735566:T:G	rs12437633	T	G	T	Sox3.mouse_HMG_1	11	1	+	1.7069330800145635	-0.42104558684631654	AAATAATGACTTTGTCA
chr15	53360695	53360696	chr15:53360696:A:C	rs2036356	A	C	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr15	53448771	53448772	chr15:53448772:T:C	chr15:53448772:T:C	T	C	T	Sox3.mouse_HMG_1	10	1	-	0.7310711009809127	-6.177174057990427	AGACAAAGACAGTGCTT
chr15	53448792	53448793	chr15:53448793:T:G	rs78610270	T	G	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr15	53521861	53521862	chr15:53521862:T:C	rs540546	T	C	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr15	53717190	53717191	chr15:53717191:C:T	rs150378935	C	T	c	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr15	53717233	53717234	chr15:53717234:C:A	rs763787967	C	A	c	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr15	53746303	53746304	chr15:53746304:T:C	rs28549113	T	C	T	Sox3.mouse_HMG_1	2	1	-	7.502442362191022	3.0945073832105643	AAACAATTCCAGTGTCC
chr15	53746324	53746325	chr15:53746325:G:A	rs186021932	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr15	53926068	53926069	chr15:53926069:G:A	rs17551329	G	A	G	Sox3.mouse_HMG_1	2	1	+	5.685783077323618	10.093718056304079	GAGCAATACTATTCTTG
chr15	54847765	54847766	chr15:54847766:A:G	rs12905779	A	G	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr15	55319774	55319775	chr15:55319775:A:G	rs76741452	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr15	55554650	55554651	chr15:55554651:A:G	rs9744862	A	G	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr15	55616004	55616005	chr15:55616005:T:C	rs491014	T	C	T	Sox3.mouse_HMG_1	2	1	-	4.689192402852072	0.2812574238716127	GAACAATGACAGAGGTT
chr15	55798344	55798345	chr15:55798345:T:G	rs58598206	T	G	T	Sox3.mouse_HMG_1	2	1	-	4.039537732118185	-2.385797147603129	GAACATTATCATGGTTT
chr15	55918361	55918362	chr15:55918362:A:G	rs74851968	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.1344948575241807	-3.5916386197782764	AAACAAATTTATTTTTA
chr15	55931808	55931809	chr15:55931809:T:G	rs12595359	T	G	T	Sox3.mouse_HMG_1	5	1	-	5.965064757227633	-0.8480800970644516	AAACCATTGAATTGTAT
chr15	56049286	56049287	chr15:56049287:T:C	rs78791728	T	C	T	Sox3.mouse_HMG_1	14	1	+	6.163274775895396	0.05338386064668932	AAAGAATGGCATTCTTT
chr15	56240811	56240812	chr15:56240812:T:C	rs72740505	T	C	C	Sox3.mouse_HMG_1	2	1	-	9.237513482499114	4.829578503518653	AGACAATAATATTATTT
chr15	56280105	56280106	chr15:56280106:G:A	rs6493843	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr15	56920274	56920275	chr15:56920275:G:A	rs191921657	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr15	57090560	57090561	chr15:57090561:C:T	rs116915857	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr15	57156787	57156788	chr15:57156788:C:T	rs8034502	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr15	57201210	57201211	chr15:57201211:A:G	rs74418386	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr15	57220804	57220805	chr15:57220805:T:A	rs2591062	T	A	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr15	57230637	57230638	chr15:57230638:G:A	rs12902170	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr15	57236558	57236559	chr15:57236559:A:G	rs72733941	A	G	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr15	57288924	57288925	chr15:57288925:A:G	rs78738069	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr15	57377427	57377428	chr15:57377428:A:G	rs75683540	A	G	A	Sox3.mouse_HMG_1	5	1	+	4.255718489011881	-2.4704149882905764	GGACAATGGAATTTTTA
chr15	57382630	57382631	chr15:57382631:A:T	rs768048639	A	T	A	Sox3.mouse_HMG_1	12	1	-	3.2462884140931165	-2.341903659539995	AAACAAGAGAATTCTTG
chr15	57527698	57527699	chr15:57527699:G:A	rs561674249	G	A	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr15	57548537	57548538	chr15:57548538:C:T	rs3742966	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr15	57548570	57548571	chr15:57548571:G:A	rs937248	G	A	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr15	57620370	57620371	chr15:57620371:A:G	rs28589756	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr15	57648063	57648064	chr15:57648064:T:C	rs2042698	T	C	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr15	58063238	58063239	chr15:58063239:A:G	rs4646554	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.1850281941776086	-3.541105283124846	AAACAATAACATATTGT
chr15	58114996	58114997	chr15:58114997:G:A	rs2704210	G	A	G	Sox3.mouse_HMG_1	1	1	-	2.9713403814515744	3.7188563514384847	GCACAATCATATTGTGT
chr15	58171578	58171579	chr15:58171579:G:C	chr15:58171579:G:C	G	C	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr15	58188083	58188084	chr15:58188084:C:G	rs4775021	C	G	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr15	58233681	58233682	chr15:58233682:T:C	rs1663252	T	C	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr15	58236175	58236176	chr15:58236176:A:G	rs8034953	A	G	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr15	58786302	58786303	chr15:58786303:G:C	rs411007	G	C	c	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr15	59170597	59170598	chr15:59170598:C:A	rs12438396	C	A	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr15	59170631	59170632	chr15:59170632:T:C	rs528312257	T	C	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr15	59174289	59174290	chr15:59174290:C:A	rs58124311	C	A	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr15	59251709	59251710	chr15:59251710:T:C	rs6494087	T	C	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr15	59267768	59267769	chr15:59267769:C:G	rs17236509	C	G	G	Sox3.mouse_HMG_1	16	1	-	2.12342247037815	-0.5125225544857197	AAAACATTACAGTGTTG
chr15	59335114	59335115	chr15:59335115:G:A	rs61414031	G	A	G	Sox3.mouse_HMG_1	7	1	+	5.196003120699528	4.699932800922217	AAACAAGGGCATTCTTG
chr15	59379059	59379060	chr15:59379060:C:T	rs11071434	C	T	C	Sox3.mouse_HMG_1	15	1	-	1.3164991533311858	2.38607438914475	AAACATTGACAGTGAGT
chr15	59563008	59563009	chr15:59563009:A:G	rs12902469	A	G	G	Sox3.mouse_HMG_1	11	1	-	2.2122445151008483	-3.8452115938595046	ATGCAATGCAATTATTT
chr15	59563014	59563015	chr15:59563015:T:C	rs34805018	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.2122445151008483	-4.513888962201608	ATGCAATGCAATTATTT
chr15	59704807	59704808	chr15:59704808:A:G	rs17191002	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr15	60074125	60074126	chr15:60074126:G:A	rs112262178	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr15	60076006	60076007	chr15:60076007:C:A	rs335810	C	A	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr15	60128455	60128456	chr15:60128456:A:C	chr15:60128456:A:C	A	C	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr15	60222983	60222984	chr15:60222984:G:C	rs8025467	G	C	G	Sox3.mouse_HMG_1	0	1	+	2.9156120303889295	2.698837183498268	GAGCAATTACATTTTTC
chr15	60395644	60395645	chr15:60395645:A:G	rs2100432	A	G	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr15	60605739	60605740	chr15:60605740:T:C	rs8030660	T	C	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr15	60606269	60606270	chr15:60606270:A:G	rs17303062	A	G	A	Sox3.mouse_HMG_1	10	1	+	1.1164772893456876	-5.7917678696256525	AGTAAATGCTATTGTTG
chr15	60682308	60682309	chr15:60682309:G:C	rs150323374	G	C	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr15	60861351	60861352	chr15:60861352:T:C	rs10519085	T	C	T	Sox3.mouse_HMG_1	4	1	-	1.4514944553760811	-5.360830636601155	TATCAATGTAAGTGGTT
chr15	60916967	60916968	chr15:60916968:G:T	rs553749137	G	T	G	Sox3.mouse_HMG_1	0	1	-	4.715348444757543	6.3049399571097435	CAACACTAACAGTGTAG
chr15	61034306	61034307	chr15:61034307:A:T	rs782961	A	T	A	Sox3.mouse_HMG_1	15	1	-	3.9393998277059934	0.4425562059135226	CAAGAATGACATTTTTA
chr15	61606422	61606423	chr15:61606423:A:G	rs8035133	A	G	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr15	61821719	61821720	chr15:61821720:T:C	rs11853774	T	C	T	Sox3.mouse_HMG_1	4	1	-	2.490898730689384	-4.321426361287852	TAACATTGACATTGAAT
chr15	61872067	61872068	chr15:61872068:A:C	rs145106201	A	C	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr15	62173285	62173286	chr15:62173286:A:G	rs34625274	A	G	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr15	62269337	62269338	chr15:62269338:T:C	rs2037275	T	C	t	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr15	62365905	62365906	chr15:62365906:A:G	rs12594294	A	G	A	Sox3.mouse_HMG_1	11	1	-	3.443212897768017	-2.6142432111923353	TAACAGTGGAATTGTGG
chr15	62375347	62375348	chr15:62375348:T:C	rs290289	T	C	t	Sox3.mouse_HMG_1	12	1	+	1.0854680643947563	-5.120997520823096	GGAAAATGACAGTGTGT
chr15	62413138	62413139	chr15:62413139:A:C	rs78261417	A	C	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr15	62424441	62424442	chr15:62424442:T:C	rs12911081	T	C	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr15	62470018	62470019	chr15:62470019:A:G	rs12915440	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr15	62650635	62650636	chr15:62650636:A:G	rs12438306	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr15	62812396	62812397	chr15:62812397:T:C	rs8032989	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr15	62812431	62812432	chr15:62812432:G:A	rs79835109	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr15	63053130	63053131	chr15:63053131:C:A	rs8030480	C	A	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr15	63107567	63107568	chr15:63107568:G:A	rs117932747	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr15	63195221	63195222	chr15:63195222:C:G	rs753891001	C	G	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr15	63274502	63274503	chr15:63274503:A:C	rs1017546	A	C	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr15	63278921	63278922	chr15:63278922:T:C	rs7163368	T	C	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr15	63454652	63454653	chr15:63454653:A:T	rs11632615	A	T	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr15	63457505	63457506	chr15:63457506:T:G	rs72748986	T	G	T	Sox3.mouse_HMG_1	2	1	-	1.1253199388950157	-5.300014940826302	GAAGTATTTCAGTGTTT
chr15	63508665	63508666	chr15:63508666:A:G	rs57932859	A	G	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr15	63551703	63551704	chr15:63551704:G:A	rs75569079	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr15	63552847	63552848	chr15:63552848:G:A	rs62011343	G	A	G	Sox3.mouse_HMG_1	7	1	+	1.082709592004857	0.5866392722275457	TCAGAATGGCAGTGTTA
chr15	64123139	64123140	chr15:64123140:T:G	rs191261182	T	G	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr15	64141696	64141697	chr15:64141697:G:T	rs7176480	G	T	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr15	64250153	64250154	chr15:64250154:A:C	rs75017103	A	C	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr15	64522093	64522094	chr15:64522094:G:A	rs673931	G	A	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr15	64792660	64792661	chr15:64792661:C:T	rs10851741	C	T	c	Sox3.mouse_HMG_1	11	1	+	3.6868961764577586	9.744352285418111	AAACAATGTTACTATAT
chr15	65206118	65206119	chr15:65206119:G:A	rs978782226	G	A	g	Sox3.mouse_HMG_1	10	1	-	2.594243320229781	2.3459637956440287	GAACCATGTCCGTGTTT
chr15	65533422	65533423	chr15:65533423:C:A	rs939417130	C	A	C	Sox3.mouse_HMG_1	2	1	-	2.7732407285372127	1.2790889715609093	TAGCAATTACAGTTTTG
chr15	65655285	65655286	chr15:65655286:T:C	chr15:65655286:T:C	T	C	T	Sox3.mouse_HMG_1	14	1	+	6.001341207309079	-0.10854970793962809	GGACAATGCTATTTTTG
chr15	65682597	65682598	chr15:65682598:T:C	rs7181632	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr15	65841075	65841076	chr15:65841076:C:T	rs73475472	C	T	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr15	66503598	66503599	chr15:66503599:C:T	rs28673176	C	T	C	Sox3.mouse_HMG_1	3	1	+	2.096180004567538	-3.8865961135667852	CAACAATACCATTAAAT
chr15	66541332	66541333	chr15:66541333:T:G	rs11853245	T	G	G	Sox3.mouse_HMG_1	4	1	-	4.723396894557186	-2.0019168204304214	AAATAATGATAGTTTTG
chr15	66721776	66721777	chr15:66721777:A:G	rs57183043	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.105104625457859	-2.5409861441710584	AAACAATGTAACTTTTA
chr15	66832774	66832775	chr15:66832775:C:T	rs78181938	C	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr15	67007585	67007586	chr15:67007586:T:C	rs438265	T	C	T	Sox3.mouse_HMG_1	0	1	+	1.3936527502827167	1.8272155632467633	TAGCAATGGTAGAGTTC
chr15	67007591	67007592	chr15:67007592:T:C	rs403542	T	C	C	Sox3.mouse_HMG_1	6	1	+	1.3936527502827167	-5.252438019346203	TAGCAATGGTAGAGTTC
chr15	67007592	67007593	chr15:67007593:G:A	rs4776869	G	A	A	Sox3.mouse_HMG_1	7	1	+	1.3936527502827167	0.8975824305054068	TAGCAATGGTAGAGTTC
chr15	67038972	67038973	chr15:67038973:A:G	rs266347	A	G	A	Sox3.mouse_HMG_1	16	1	-	2.855579120844814	-0.7462175447761683	AAACAAAGATGTTGTAT
chr15	67039044	67039045	chr15:67039045:C:A	rs8023420	C	A	T	Sox3.mouse_HMG_1	8	1	-	1.5983391382915375	1.8049313748336404	AAACAAAGGCATTTTCT
chr15	67149527	67149528	chr15:67149528:C:G	rs2033785	C	G	C	Sox3.mouse_HMG_1	11	1	-	3.1334762609131728	-0.796001181186299	TAACAATGTCAGGGTGG
chr15	67198935	67198936	chr15:67198936:C:A	rs12917612	C	A	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr15	67208694	67208695	chr15:67208695:G:A	rs2289262	G	A	G	Sox3.mouse_HMG_1	13	1	+	4.135061970430177	-1.9730438195957385	CAACAATTTAATCGTAG
chr15	67461353	67461354	chr15:67461354:C:T	rs8025163	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr15	67523045	67523046	chr15:67523046:G:A	rs3743359	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr15	67534442	67534443	chr15:67534443:C:T	rs72747479	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr15	67680649	67680650	chr15:67680650:T:C	rs2414976	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr15	67708152	67708153	chr15:67708153:A:G	rs66818657	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr15	67736022	67736023	chr15:67736023:G:A	rs9888652	G	A	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr15	67850376	67850377	chr15:67850377:C:T	rs62016775	C	T	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr15	67850379	67850380	chr15:67850380:A:G	rs62016776	A	G	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr15	67999248	67999249	chr15:67999249:A:G	rs143395378	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.355563916230647	-2.290526853398272	AAAGAATAGAATTGTGA
chr15	68313364	68313365	chr15:68313365:T:C	rs7174916	T	C	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr15	69082498	69082499	chr15:69082499:A:G	rs114455428	A	G	A	Sox3.mouse_HMG_1	14	1	-	2.999937340519835	-3.109953574728872	ATACTATTACATTGTAG
chr15	69417452	69417453	chr15:69417453:C:T	rs61751119	C	T	C	Sox3.mouse_HMG_1	5	1	-	2.4322527824052185	9.158386259707676	GAACAGTTGTATTATTG
chr15	69652119	69652120	chr15:69652120:G:T	rs7170391	G	T	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr15	69787202	69787203	chr15:69787203:T:A	rs11072119	T	A	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr15	69853072	69853073	chr15:69853073:C:G	rs305007	C	G	C	Sox3.mouse_HMG_1	0	1	-	3.5698914420880437	3.353116595197384	GAACAGTGGCATTGCTA
chr15	69913615	69913616	chr15:69913616:A:G	rs2601891	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr15	69929134	69929135	chr15:69929135:T:C	rs11632956	T	C	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr15	69953253	69953254	chr15:69953254:A:T	rs61999900	A	T	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr15	70024221	70024222	chr15:70024222:C:T	rs150884814	C	T	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr15	70046956	70046957	chr15:70046957:A:G	rs10083564	A	G	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr15	70046970	70046971	chr15:70046971:G:C	rs76147319	G	C	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr15	70053952	70053953	chr15:70053953:G:A	rs6494841	G	A	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr15	70091277	70091278	chr15:70091278:T:C	rs658279	T	C	C	Sox3.mouse_HMG_1	10	1	-	0.27596130570286886	-6.632283853268469	GAGCACTGACATTTTTG
chr15	70323906	70323907	chr15:70323907:A:G	rs1212420971	A	G	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr15	70328257	70328258	chr15:70328258:G:A	rs534593743	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr15	70419484	70419485	chr15:70419485:C:T	rs60892859	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr15	70419507	70419508	chr15:70419508:C:T	rs116882112	C	T	C	Sox3.mouse_HMG_1	13	1	-	1.213843573167138	-4.8942622168587775	AGAGAATGGTAGTGTGT
chr15	70494387	70494388	chr15:70494388:G:A	rs56179949	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr15	70610478	70610479	chr15:70610479:T:C	rs114365334	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr15	70741673	70741674	chr15:70741674:T:C	rs16954772	T	C	c	Sox3.mouse_HMG_1	1	1	-	2.6597536295408775	-1.6676797138618173	GAGTAATAACATTGATT
chr15	71262035	71262036	chr15:71262036:C:T	rs12594008	C	T	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr15	71373484	71373485	chr15:71373485:T:C	rs2119568	T	C	T	Sox3.mouse_HMG_1	13	1	+	1.3949839127345103	1.6559977381041293	AAACAAAGACATTTTGG
chr15	71395953	71395954	chr15:71395954:A:C	rs7495681	A	C	c	Sox3.mouse_HMG_1	15	1	-	1.9460476296445663	-2.620371227961469	CAACAAAGTCTGTGTTT
chr15	71559899	71559900	chr15:71559900:T:C	rs56028454	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr15	71662549	71662550	chr15:71662550:G:A	rs928276983	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr15	71707470	71707471	chr15:71707471:C:G	rs117267429	C	G	C	Sox3.mouse_HMG_1	3	1	+	3.919698165750206	-2.987336853907447	GAACAAGAACATTATTA
chr15	71752912	71752913	chr15:71752913:G:A	rs17810997	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr15	71789844	71789845	chr15:71789845:C:T	rs7497228	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr15	71976644	71976645	chr15:71976645:A:G	rs10518979	A	G	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr15	72588332	72588333	chr15:72588333:C:T	rs17753089	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr15	72702222	72702223	chr15:72702223:A:G	rs34661924	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr15	73878217	73878218	chr15:73878218:C:T	rs79173965	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr15	74545768	74545769	chr15:74545769:G:A	chr15:74545769:G:A	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr15	74580404	74580405	chr15:74580405:G:A	rs4887163	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr15	74940698	74940699	chr15:74940699:T:G	rs112133483	T	G	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr15	74950060	74950061	chr15:74950061:C:T	rs5025115	C	T	C	Sox3.mouse_HMG_1	13	1	-	3.9348783917644234	-2.1732273982614925	AAAAAATTAAATAGTTG
chr15	75246731	75246732	chr15:75246732:G:A	rs12591234	G	A	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr15	75277814	75277815	chr15:75277815:T:A	rs1826226	T	A	-	Sox3.mouse_HMG_1	10	1	-	7.109575967891611	0.29664098872459765	AAACAGTGACATTTTTT
chr15	75565327	75565328	chr15:75565328:A:G	rs78371424	A	G	A	Sox3.mouse_HMG_1	4	1	+	1.5352042129061	-5.277120879071139	AAACACTAAATGTGTTG
chr15	76541437	76541438	chr15:76541438:C:T	rs157768	C	T	C	Sox3.mouse_HMG_1	13	1	-	1.4890054081055015	-4.619100381920415	AAACTATACCATCGTGT
chr15	76945638	76945639	chr15:76945639:T:C	rs117461637	T	C	T	Sox3.mouse_HMG_1	11	1	+	1.9749461856217934	-4.082509923338559	AAACATTTATATTGAAG
chr15	77019699	77019700	chr15:77019700:G:A	rs16968623	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr15	77019721	77019722	chr15:77019722:T:C	rs35075154	T	C	T	Sox3.mouse_HMG_1	2	1	-	0.7660475435078276	-3.641887435472635	AGACCATGTTCTTGTTG
chr15	77021689	77021690	chr15:77021690:T:C	rs8029854	T	C	C	Sox3.mouse_HMG_1	9	1	+	3.0082926864058255	3.0439988112903933	AAAAAAAGATAGTGTTA
chr15	77021715	77021716	chr15:77021716:C:G	rs76510434	C	G	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr15	77097463	77097464	chr15:77097464:G:C	rs566140713	G	C	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr15	77357283	77357284	chr15:77357284:T:A	rs1949269	T	A	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr15	77519685	77519686	chr15:77519686:A:G	rs34080199	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr15	77568589	77568590	chr15:77568590:T:G	rs113809754	T	G	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr15	77801555	77801556	chr15:77801556:T:C	rs4075024	T	C	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr15	78273273	78273274	chr15:78273274:A:G	rs56229935	A	G	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr15	78642208	78642209	chr15:78642209:G:A	rs3813567	G	A	-	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr15	78660354	78660355	chr15:78660355:C:T	rs11072774	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr15	78727809	78727810	chr15:78727810:C:G	rs35583595	C	G	-	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr15	78860534	78860535	chr15:78860535:A:G	rs12442152	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr15	78860536	78860537	chr15:78860537:C:G	rs114772595	C	G	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr15	78874917	78874918	chr15:78874918:T:C	rs77362013	T	C	T	Sox3.mouse_HMG_1	10	1	-	5.429389116966874	-1.478856042004465	GAGCAATTACACTGTTA
chr15	78874938	78874939	chr15:78874939:C:T	rs77957002	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr15	79096950	79096951	chr15:79096951:C:T	rs78496982	C	T	C	Sox3.mouse_HMG_1	16	1	-	2.8911165623043877	2.4572851175832806	TAACAATTCCATTTATG
chr15	79170693	79170694	chr15:79170694:A:T	rs8038464	A	T	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr15	79419047	79419048	chr15:79419048:A:G	rs769765	A	G	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr15	79455536	79455537	chr15:79455537:C:T	rs535886534	C	T	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr15	79547568	79547569	chr15:79547569:C:T	rs7181421	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr15	79548958	79548959	chr15:79548959:T:C	rs17183085	T	C	T	Sox3.mouse_HMG_1	16	1	+	0.568747956658107	-3.033048708962875	AACCAACGACCTTGTTT
chr15	79570891	79570892	chr15:79570892:G:A	rs79370723	G	A	a	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr15	79773207	79773208	chr15:79773208:C:T	rs62026584	C	T	C	Sox3.mouse_HMG_1	8	1	-	1.370593817776988	2.3970072927876247	CGACAATAGCAATGTGG
chr15	79844489	79844490	chr15:79844490:G:A	rs35083796	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr15	79858670	79858671	chr15:79858671:A:G	rs4779165	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr15	79865240	79865241	chr15:79865241:T:C	rs16971460	T	C	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr15	79944029	79944030	chr15:79944030:A:G	rs79504174	A	G	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr15	80484251	80484252	chr15:80484252:A:G	rs61144989	A	G	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr15	80613208	80613209	chr15:80613209:C:A	rs11072926	C	A	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr15	80773384	80773385	chr15:80773385:T:C	rs4424873	T	C	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr15	80811445	80811446	chr15:80811446:A:G	rs73497055	A	G	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr15	80922269	80922270	chr15:80922270:A:C	rs2271162	A	C	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr15	81328019	81328020	chr15:81328020:A:G	rs28529299	A	G	A	Sox3.mouse_HMG_1	8	1	+	1.7002070292499885	0.6737935542393517	CAAAAATGATATAGTGT
chr15	81335386	81335387	chr15:81335387:A:G	rs61112061	A	G	A	Sox3.mouse_HMG_1	5	1	+	11.936629377983506	5.2104959006810505	GGACAATGCTATTGTTA
chr15	81335393	81335394	chr15:81335394:T:C	rs116750573	T	C	T	Sox3.mouse_HMG_1	12	1	+	11.936629377983506	5.730163792765655	GGACAATGCTATTGTTA
chr15	81353117	81353118	chr15:81353118:G:A	rs7163851	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr15	81401428	81401429	chr15:81401429:G:A	rs115681804	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr15	81410479	81410480	chr15:81410480:G:T	rs967376194	G	T	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr15	81410511	81410512	chr15:81410512:C:G	rs12101997	C	G	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr15	82095609	82095610	chr15:82095610:G:C	rs1969090	G	C	C	Sox3.mouse_HMG_1	14	1	-	9.123983914695236	8.807225578161946	TAACAATGTCAGTGCTT
chr15	82136255	82136256	chr15:82136256:C:A	rs77541858	C	A	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr15	83100242	83100243	chr15:83100243:T:C	rs67988460	T	C	T	Sox3.mouse_HMG_1	2	1	-	3.1035132944311865	-1.3044216845492735	GAACAATGGAAGAGTGG
chr15	83410536	83410537	chr15:83410537:A:G	rs2399140	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr15	83517135	83517136	chr15:83517136:G:A	rs11636510	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr15	83765670	83765671	chr15:83765671:A:G	rs1122405	A	G	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr15	83904581	83904582	chr15:83904582:A:G	rs7179150	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr15	83923268	83923269	chr15:83923269:A:T	rs147966746	A	T	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr15	83972265	83972266	chr15:83972266:T:G	rs12148239	T	G	T	Sox3.mouse_HMG_1	11	1	-	5.796280499709061	5.6012804846553355	AAAAAATGTTAATGTTG
chr15	84597562	84597563	chr15:84597563:C:T	rs7176527	C	T	C	Sox3.mouse_HMG_1	11	1	-	0.5378777121937994	-3.196599714851949	GCACAATTGCCGTGTTA
chr15	84937254	84937255	chr15:84937255:T:C	rs8029847	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr15	85149435	85149436	chr15:85149436:G:C	rs58401709	G	C	G	Sox3.mouse_HMG_1	16	1	+	3.8334241034796652	1.1974790786157956	AAACAAAGACAGTTTTG
chr15	85327815	85327816	chr15:85327816:T:C	rs8037070	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr15	85343667	85343668	chr15:85343668:T:C	rs76520652	T	C	T	Sox3.mouse_HMG_1	9	1	+	5.719070264251387	5.754776389135955	TAAAAATGATATTGTCA
chr15	85408486	85408487	chr15:85408487:T:G	rs12901648	T	G	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr15	85559144	85559145	chr15:85559145:G:C	rs2344437	G	C	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr15	85648297	85648298	chr15:85648298:G:T	rs374885	G	T	T	Sox3.mouse_HMG_1	7	1	+	2.5464229459135588	1.008873841171404	TAAAAATGGAAGTGTCT
chr15	85648323	85648324	chr15:85648324:C:G	rs408243	C	G	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr15	85662220	85662221	chr15:85662221:T:C	rs116153449	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr15	85662246	85662247	chr15:85662247:G:A	rs189264	G	A	A	Sox3.mouse_HMG_1	11	1	+	2.2241775728218602	-1.5102998542238868	AAAAATTGTCAGTGTTA
chr15	85750473	85750474	chr15:85750474:C:T	rs1105703	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr15	85798887	85798888	chr15:85798888:A:G	rs72753626	A	G	A	Sox3.mouse_HMG_1	6	1	-	2.7222017896668476	-3.9238889799620704	AGAAAATGACAGTGTCT
chr15	86161990	86161991	chr15:86161991:T:A	rs569223852	T	A	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr15	86193883	86193884	chr15:86193884:T:C	rs139605656	T	C	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr15	86624422	86624423	chr15:86624423:T:C	rs17683342	T	C	T	Sox3.mouse_HMG_1	1	1	-	2.8988021398385344	-1.4286312035641568	AAACCATGGCACTGTAT
chr15	86783103	86783104	chr15:86783104:T:A	rs16977979	T	A	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr15	86849821	86849822	chr15:86849822:C:A	rs28524607	C	A	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr15	86849823	86849824	chr15:86849824:C:G	rs76725465	C	G	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr15	86878371	86878372	chr15:86878372:G:A	rs62032641	G	A	G	Sox3.mouse_HMG_1	3	1	-	5.421319447430974	-0.5614566707033476	AAACAAAGGTTTTGTTT
chr15	86906115	86906116	chr15:86906116:A:T	rs112539737	A	T	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr15	87269505	87269506	chr15:87269506:T:C	rs1499738	T	C	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr15	87447148	87447149	chr15:87447149:C:T	rs28616247	C	T	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr15	87609468	87609469	chr15:87609469:G:A	rs56382305	G	A	A	Sox3.mouse_HMG_1	11	1	+	3.466141224177938	-0.26833620286780924	TTACAATGCCCGTGTTT
chr15	87609468	87609469	chr15:87609469:G:T	chr15:87609469:G:T	G	T	A	Sox3.mouse_HMG_1	11	1	+	3.466141224177938	5.594119891038818	TTACAATGCCCGTGTTT
chr15	87609480	87609481	chr15:87609481:C:G	rs10852088	C	G	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr15	87618336	87618337	chr15:87618337:G:A	rs4611422	G	A	A	Sox3.mouse_HMG_1	3	1	-	6.149482072624615	0.16670595449029346	CAGCAATAAAATTCTTT
chr15	87827359	87827360	chr15:87827360:T:C	rs1006113640	T	C	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr15	88191114	88191115	chr15:88191115:T:C	rs11852633	T	C	A	Sox3.mouse_HMG_1	8	1	-	1.1521598158961257	0.1257463408854897	ACATAATGATAGTGTCG
chr15	88375186	88375187	chr15:88375187:C:A	rs118045359	C	A	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr15	88375202	88375203	chr15:88375203:A:G	rs74028002	A	G	A	Sox3.mouse_HMG_1	15	1	-	1.4384931538995827	-2.864008643895901	ACACAATCACATTCTTA
chr15	88543421	88543422	chr15:88543422:A:T	rs9920066	A	T	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr15	88787118	88787119	chr15:88787119:G:A	rs7495010	G	A	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr15	89026137	89026138	chr15:89026138:A:C	rs4932207	A	C	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr15	89660228	89660229	chr15:89660229:G:T	rs76478344	G	T	G	Sox3.mouse_HMG_1	13	1	+	1.8329741837545424	-4.536145431640993	AAACAATCCAAATGTCT
chr15	89898573	89898574	chr15:89898574:T:G	rs3803535	T	G	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr15	89947137	89947138	chr15:89947138:T:A	rs3913880	T	A	T	Sox3.mouse_HMG_1	10	1	+	1.3674486420179865	8.180383621185	AAACAATGAATTTCTAG
chr15	90103706	90103707	chr15:90103707:A:G	rs4283211	A	G	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr15	90113416	90113417	chr15:90113417:C:T	rs59337025	C	T	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr15	90248785	90248786	chr15:90248786:C:T	rs12916170	C	T	C	Sox3.mouse_HMG_1	3	1	+	3.755583963971542	-2.227192154162781	AAACATTTTAAGTGTTC
chr15	90248788	90248789	chr15:90248789:T:C	rs78960444	T	C	T	Sox3.mouse_HMG_1	6	1	+	3.755583963971542	-2.8905068056573793	AAACATTTTAAGTGTTC
chr15	90408283	90408284	chr15:90408284:T:C	rs10520688	T	C	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr15	90539953	90539954	chr15:90539954:C:T	rs7174198	C	T	c	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr15	90628327	90628328	chr15:90628328:G:A	rs6416556	G	A	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr15	90743725	90743726	chr15:90743726:C:T	rs76838462	C	T	C	Sox3.mouse_HMG_1	12	1	+	3.1239428242088803	9.330408409426733	CAACAATTGTATCGATA
chr15	90745377	90745378	chr15:90745378:G:A	rs56087533	G	A	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr15	90834625	90834626	chr15:90834626:G:A	rs7179164	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr15	90834629	90834630	chr15:90834630:G:A	rs7179166	G	A	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr15	90861474	90861475	chr15:90861475:G:A	rs4932370	G	A	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr15	90932043	90932044	chr15:90932044:G:A	rs34967259	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr15	90971566	90971567	chr15:90971567:C:A	rs11853024	C	A	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr15	91051724	91051725	chr15:91051725:C:T	rs6496755	C	T	c	Sox3.mouse_HMG_1	13	1	-	4.081104364066014	-2.027001425959903	GAACAATGGTAATGGTA
chr15	91253065	91253066	chr15:91253066:A:G	rs74686949	A	G	A	Sox3.mouse_HMG_1	11	1	-	2.6123580932252493	-3.4450980157351037	AAACCATGACCTTGTCT
chr15	91376975	91376976	chr15:91376976:T:C	rs7174162	T	C	T	Sox3.mouse_HMG_1	6	1	+	7.967580451804448	1.3214896821755293	AAACTATGGCATTGTAA
chr15	91426304	91426305	chr15:91426305:C:A	rs4244890	C	A	A	Sox3.mouse_HMG_1	3	1	+	-0.3334763586359584	-7.058189821499657	GGCCTATGCCATTGTTG
chr15	91469693	91469694	chr15:91469694:G:A	rs7176401	G	A	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr15	91521219	91521220	chr15:91521220:T:C	rs56139470	T	C	T	Sox3.mouse_HMG_1	16	1	+	1.5758038187316417	-2.0259928468893404	GAACTATTCTAGTCTTT
chr15	91530026	91530027	chr15:91530027:A:G	rs4380038	A	G	a	Sox3.mouse_HMG_1	6	1	-	5.103323481920408	-1.542767287708512	GTACTATAGTATTGTTG
chr15	91538210	91538211	chr15:91538211:G:A	rs7498047	G	A	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr15	91682874	91682875	chr15:91682875:A:G	rs7495376	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr15	91814214	91814215	chr15:91814215:C:G	rs376041337	C	G	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr15	91889481	91889482	chr15:91889482:C:G	rs8041961	C	G	C	Sox3.mouse_HMG_1	13	1	-	1.1397682457270792	-4.968337544298836	AAGCAAGCACAGTGTTT
chr15	92020854	92020855	chr15:92020855:G:A	rs8037164	G	A	g	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr15	92117473	92117474	chr15:92117474:A:G	rs17597602	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr15	92117487	92117488	chr15:92117488:A:G	rs888318839	A	G	A	Sox3.mouse_HMG_1	5	1	-	0.5991725859337855	0.6944827657381112	AAACATTGCCAATGTCA
chr15	92128025	92128026	chr15:92128026:A:G	rs2190750	A	G	A	Sox3.mouse_HMG_1	1	1	+	2.2713809280900588	-2.0560524153126325	CATCAATACCAGTGATA
chr15	92155412	92155413	chr15:92155413:G:C	rs960440	G	C	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr15	92155453	92155454	chr15:92155454:G:A	rs768882	G	A	A	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr15	92192496	92192497	chr15:92192497:C:T	rs73546343	C	T	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr15	92199516	92199517	chr15:92199517:C:G	rs7174969	C	G	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr15	92320436	92320437	chr15:92320437:A:G	rs12592183	A	G	G	Sox3.mouse_HMG_1	6	1	-	6.121072761992348	-0.5250180076365696	AAACAATGTAATTCTCA
chr15	92372205	92372206	chr15:92372206:G:A	rs7181423	G	A	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr15	92451578	92451579	chr15:92451579:A:G	rs988965965	A	G	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr15	92471252	92471253	chr15:92471253:C:T	rs897466	C	T	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr15	92632967	92632968	chr15:92632968:C:T	rs12908630	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr15	92675181	92675182	chr15:92675182:C:T	rs206355	C	T	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr15	92676485	92676486	chr15:92676486:G:C	rs285720	G	C	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr15	92886415	92886416	chr15:92886416:A:G	rs1439620	A	G	A	Sox3.mouse_HMG_1	6	1	-	2.6868567896806477	-3.959233979948274	TAGTAATAGAAGTGTTT
chr15	93111443	93111444	chr15:93111444:C:A	rs8025252	C	A	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr15	93250323	93250324	chr15:93250324:T:C	rs936677	T	C	C	Sox3.mouse_HMG_1	11	1	+	3.1362282239319583	-2.9212278850283955	GATCAATTTGATTGTTA
chr15	93284868	93284869	chr15:93284869:C:T	rs4777643	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr15	93477507	93477508	chr15:93477508:T:A	rs72758037	T	A	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr15	93488231	93488232	chr15:93488232:G:A	rs56699134	G	A	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr15	93717180	93717181	chr15:93717181:A:G	rs12148916	A	G	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr15	93829390	93829391	chr15:93829391:A:C	rs12437481	A	C	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr15	93943245	93943246	chr15:93943246:A:G	rs11855197	A	G	A	Sox3.mouse_HMG_1	0	1	+	3.542013178260861	2.1691965127993242	AAACAATCATATTGCAA
chr15	93982156	93982157	chr15:93982157:G:A	rs62027782	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr15	94134942	94134943	chr15:94134943:T:C	rs77698158	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr15	94577177	94577178	chr15:94577178:A:G	rs565494632	A	G	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr15	94577185	94577186	chr15:94577186:C:T	rs28525289	C	T	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr15	94602404	94602405	chr15:94602405:C:T	rs12913190	C	T	C	Sox3.mouse_HMG_1	2	1	-	1.2586198938521787	5.666554872832641	TAGCAATGACTTTGTCA
chr15	94779181	94779182	chr15:94779182:T:A	rs8039898	T	A	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr15	94858806	94858807	chr15:94858807:C:T	rs4984444	C	T	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr15	94889271	94889272	chr15:94889272:A:C	rs4372639	A	C	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr15	95112545	95112546	chr15:95112546:C:T	rs12911149	C	T	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr15	95196894	95196895	chr15:95196895:G:A	rs7163735	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr15	95297083	95297084	chr15:95297084:T:C	rs75080477	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr15	95464858	95464859	chr15:95464859:T:G	chr15:95464859:T:G	T	G	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr15	95608684	95608685	chr15:95608685:C:T	rs10520792	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr15	96265053	96265054	chr15:96265054:A:T	rs140553196	A	T	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr15	96317241	96317242	chr15:96317242:C:A	rs148728046	C	A	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr15	96364436	96364437	chr15:96364437:A:G	rs12442624	A	G	A	Sox3.mouse_HMG_1	6	1	-	1.902089960185784	-4.744000809443141	TACAAATGATAGTGTTG
chr15	96836857	96836858	chr15:96836858:T:G	rs12915148	T	G	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr15	97082182	97082183	chr15:97082183:T:C	rs8042635	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr15	97522472	97522473	chr15:97522473:G:A	rs904871	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr15	97708634	97708635	chr15:97708635:G:C	rs12907716	G	C	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr15	97884635	97884636	chr15:97884636:G:C	rs11073586	G	C	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr15	98005945	98005946	chr15:98005946:C:T	rs36135853	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr15	98134975	98134976	chr15:98134976:C:T	rs1383146	C	T	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr15	98155622	98155623	chr15:98155623:C:T	rs55869720	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr15	98359244	98359245	chr15:98359245:T:G	rs28788799	T	G	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr15	98519019	98519020	chr15:98519020:G:A	rs74952152	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr15	98591194	98591195	chr15:98591195:T:C	rs80280442	T	C	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr15	98697881	98697882	chr15:98697882:C:T	rs113653733	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr15	98767861	98767862	chr15:98767862:A:G	rs72769824	A	G	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr15	98767897	98767898	chr15:98767898:A:C	rs12905037	A	C	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr15	98844299	98844300	chr15:98844300:G:A	rs2175797	G	A	A	Sox3.mouse_HMG_1	3	1	-	3.4442069213798083	-2.538569196754514	AAACTATGATATTCTCT
chr15	99052197	99052198	chr15:99052198:A:G	rs74032167	A	G	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr15	99251838	99251839	chr15:99251839:G:C	rs28433855	G	C	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr15	99251843	99251844	chr15:99251844:T:A	rs60424090	T	A	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr15	99513424	99513425	chr15:99513425:A:G	rs115478130	A	G	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr15	99567077	99567078	chr15:99567078:A:G	rs911706969	A	G	a	Sox3.mouse_HMG_1	11	1	-	8.921546696120272	2.86409058715992	CAACAATTCTATAGTTA
chr15	99712102	99712103	chr15:99712103:T:G	rs60066240	T	G	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr15	99967041	99967042	chr15:99967042:T:C	rs2727172	T	C	T	Sox3.mouse_HMG_1	15	1	+	5.95195079518115	1.6494489973856667	AATCAATAGCAATGTTG
chr15	100092918	100092919	chr15:100092919:C:T	rs35978754	C	T	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr15	100109393	100109394	chr15:100109394:C:T	rs13379647	C	T	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr15	100254268	100254269	chr15:100254269:C:T	rs80342915	C	T	C	Sox3.mouse_HMG_1	16	1	-	1.0386424346887606	0.6048109899676535	GAAAAATAACATTGCAG
chr15	100339065	100339066	chr15:100339066:T:C	rs76606168	T	C	T	Sox3.mouse_HMG_1	12	1	+	4.152129644687273	-2.0543359405305788	AAACAACAGAAGTGTCT
chr15	100572799	100572800	chr15:100572800:T:C	rs4965317	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr15	100855496	100855497	chr15:100855497:C:G	rs531043639	C	G	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr15	100855518	100855519	chr15:100855519:G:T	rs6598393	G	T	T	Sox3.mouse_HMG_1	3	1	-	0.3685704377238734	-6.356143025139826	AAACAAGGGCATTTTGG
chr15	101005428	101005429	chr15:101005429:G:A	rs77497708	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr15	101042839	101042840	chr15:101042840:T:G	rs36113423	T	G	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr15	101192277	101192278	chr15:101192278:T:G	rs908527707	T	G	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr15	101203464	101203465	chr15:101203465:C:A	rs11247276	C	A	C	Sox3.mouse_HMG_1	7	1	-	6.408170084836364	4.870620980094209	AAATGATGATATTGTTG
chr15	101203482	101203483	chr15:101203483:A:G	rs34969439	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr15	101296066	101296067	chr15:101296067:T:C	rs8035837	T	C	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr15	101342174	101342175	chr15:101342175:G:A	rs6598451	G	A	A	Sox3.mouse_HMG_1	2	1	+	2.4407702962686226	6.848705275249083	AAGTAATATCACTGTTT
chr15	101347346	101347347	chr15:101347347:C:G	rs60289824	C	G	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr15	101366983	101366984	chr15:101366984:A:G	rs756559	A	G	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr15	101387914	101387915	chr15:101387915:C:T	rs3825911	C	T	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr15	101411179	101411180	chr15:101411180:C:T	rs880455	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr15	101437251	101437252	chr15:101437252:G:A	rs59713424	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr15	101437252	101437253	chr15:101437253:T:C	rs1466744	T	C	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr15	101451741	101451742	chr15:101451742:C:T	rs7173205	C	T	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr15	101466088	101466089	chr15:101466089:C:T	rs12904206	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr15	101500612	101500613	chr15:101500613:A:G	rs2898886	A	G	A	Sox3.mouse_HMG_1	10	1	+	1.696102523337852	-5.212142635633486	CAGCAATGCTACTGATT
chr15	101552591	101552592	chr15:101552592:C:G	rs11638504	C	G	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr15	101641280	101641281	chr15:101641281:C:T	chr15:101641281:C:T	C	T	c	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr15	101685212	101685213	chr15:101685213:A:G	rs7171560	A	G	G	Sox3.mouse_HMG_1	7	1	-	7.518470561343629	3.4353275311610103	CAACAATTGTAGTTTTT
chr16	169497	169498	chr16:169498:G:T	rs28444102	G	T	N	Sox3.mouse_HMG_1	5	1	+	0.37282238326299255	0.19050082646903832	CAACAGTGGAGGTGTTT
chr16	424216	424217	chr16:424217:C:T	rs74328830	C	T	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr16	427618	427619	chr16:427619:C:G	rs1204510	C	G	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr16	528509	528510	chr16:528510:C:A	rs564849507	C	A	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr16	601516	601517	chr16:601517:C:T	rs7191584	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr16	601537	601538	chr16:601538:G:A	rs11642273	G	A	A	Sox3.mouse_HMG_1	13	1	+	0.3952949451536724	-5.712810844872243	GAGCAATGTGATCGTTG
chr16	778079	778080	chr16:778080:C:T	rs114590746	C	T	C	Sox3.mouse_HMG_1	11	1	+	2.4468244290508543	8.504280538011207	AAACTATGTCACTGTGT
chr16	948244	948245	chr16:948245:A:C	rs66532042	A	C	-	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr16	1559505	1559506	chr16:1559506:G:A	rs111841312	G	A	G	Sox3.mouse_HMG_1	7	1	+	1.163016548464066	0.6669462286867551	GAACAAGGGCAGCGTTA
chr16	1830147	1830148	chr16:1830148:C:G	rs11648810	C	G	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr16	1874763	1874764	chr16:1874764:T:C	rs6600180	T	C	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr16	2503352	2503353	chr16:2503353:A:G	rs11543247	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr16	2679932	2679933	chr16:2679933:G:C	rs112436312	G	C	N	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr16	2775274	2775275	chr16:2775275:T:A	rs3094776	T	A	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr16	2907490	2907491	chr16:2907491:C:T	rs7201839	C	T	t	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr16	3006561	3006562	chr16:3006562:A:G	rs2526270	A	G	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr16	3006582	3006583	chr16:3006583:G:T	rs2526269	G	T	T	Sox3.mouse_HMG_1	13	1	+	1.223310393644538	-5.145809221750998	AAACAACAGAAATGTAT
chr16	3135735	3135736	chr16:3135736:T:C	rs560947	T	C	C	Sox3.mouse_HMG_1	9	1	+	2.0618060219004173	2.097512146784987	GTACAATGGTATTGAGG
chr16	3263701	3263702	chr16:3263702:A:C	chr16:3263702:A:C	A	C	A	Sox3.mouse_HMG_1	6	1	-	3.455153121951913	-3.453301912144497	AAACAGTGTCAGTGCTG
chr16	3263704	3263705	chr16:3263705:G:A	chr16:3263705:G:A	G	A	G	Sox3.mouse_HMG_1	3	1	-	3.455153121951913	-2.527622996182408	AAACAGTGTCAGTGCTG
chr16	3263725	3263726	chr16:3263726:G:C	rs6501166	G	C	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr16	3317646	3317647	chr16:3317647:G:A	rs143606430	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr16	3473606	3473607	chr16:3473607:T:C	rs166103	T	C	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr16	3782469	3782470	chr16:3782470:A:G	rs130021	A	G	A	Sox3.mouse_HMG_1	12	1	-	7.1625800983319134	0.9561145131140618	AAGCAATGTTTTTGTTG
chr16	4410811	4410812	chr16:4410812:T:C	rs1433413303	T	C	T	Sox3.mouse_HMG_1	10	1	-	0.7231618176045886	-6.18508334136675	CAACAACTGCAGAGTTG
chr16	4874893	4874894	chr16:4874894:A:G	rs6500638	A	G	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr16	4893017	4893018	chr16:4893018:T:G	rs12921187	T	G	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr16	4947450	4947451	chr16:4947451:T:G	rs72771955	T	G	T	Sox3.mouse_HMG_1	6	1	+	3.468163209951297	-3.4402918241451106	AAACAATGTAAGTTTGA
chr16	4947463	4947464	chr16:4947464:T:C	rs2908658	T	C	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr16	5034286	5034287	chr16:5034287:C:G	rs79089385	C	G	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr16	5323938	5323939	chr16:5323939:C:T	rs2005316	C	T	C	Sox3.mouse_HMG_1	3	1	+	0.874572005703925	-5.108204112430395	AGACGATGTTATTTTTG
chr16	5557916	5557917	chr16:5557917:A:G	rs55646071	A	G	G	Sox3.mouse_HMG_1	5	1	+	5.380857769214492	-1.3452757080879614	GAACAATGACAGTGGAA
chr16	5624588	5624589	chr16:5624589:C:G	rs762380853	C	G	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr16	5671429	5671430	chr16:5671430:A:C	rs8064152	A	C	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr16	5867284	5867285	chr16:5867285:T:C	rs76923005	T	C	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr16	6016583	6016584	chr16:6016584:A:G	rs79716111	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr16	6205414	6205415	chr16:6205415:T:C	rs10500334	T	C	T	Sox3.mouse_HMG_1	10	1	-	0.9539719956258185	-5.95427316334552	AAAAAATGCCATTAATT
chr16	6489014	6489015	chr16:6489015:C:T	rs62016826	C	T	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr16	6489045	6489046	chr16:6489046:C:T	rs78322108	C	T	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr16	6779551	6779552	chr16:6779552:T:C	rs28863217	T	C	C	Sox3.mouse_HMG_1	4	1	+	3.5245554002592536	3.1135501117754734	AAATTATGTTAGTGTTA
chr16	6803282	6803283	chr16:6803283:G:A	rs12447496	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr16	6837902	6837903	chr16:6837903:C:G	rs59758460	C	G	C	Sox3.mouse_HMG_1	9	1	+	3.0194989785675337	-3.017145027982896	CAACAATGACAGTTTAC
chr16	6958515	6958516	chr16:6958516:C:A	chr16:6958516:C:A	C	A	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr16	7036039	7036040	chr16:7036040:C:T	rs12444783	C	T	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr16	7313222	7313223	chr16:7313223:A:G	rs4786995	A	G	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr16	8021082	8021083	chr16:8021083:A:G	rs7206233	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.2831570988538008	-5.4429763784486545	AAAAAATGTAATTGGAT
chr16	8531221	8531222	chr16:8531222:G:A	rs114324083	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr16	8579161	8579162	chr16:8579162:T:C	rs7187729	T	C	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr16	8728982	8728983	chr16:8728983:C:G	rs4984997	C	G	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr16	8818768	8818769	chr16:8818769:T:C	rs111550553	T	C	T	Sox3.mouse_HMG_1	8	1	-	3.228870637941907	2.202457162931271	GAAGAATGACAGGGTTT
chr16	8862845	8862846	chr16:8862846:G:A	rs254945	G	A	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr16	8867005	8867006	chr16:8867006:A:G	rs12446587	A	G	G	Sox3.mouse_HMG_1	6	1	-	3.614739528532073	-3.031351241096847	AGGCAATGGCAATGTTG
chr16	8867006	8867007	chr16:8867007:T:C	rs12447292	T	C	C	Sox3.mouse_HMG_1	5	1	-	3.614739528532073	-3.1113939487703832	AGGCAATGGCAATGTTG
chr16	8932241	8932242	chr16:8932242:C:T	rs77188284	C	T	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr16	8949357	8949358	chr16:8949358:T:C	rs7192015	T	C	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr16	8983078	8983079	chr16:8983079:A:G	rs11075084	A	G	A	Sox3.mouse_HMG_1	7	1	+	2.563347486546245	3.0594178063235558	GAACAAAATAAGTGTAG
chr16	9007728	9007729	chr16:9007729:C:G	rs8059363	C	G	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr16	9012244	9012245	chr16:9012245:T:G	rs7201785	T	G	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr16	9189045	9189046	chr16:9189046:C:T	rs9937578	C	T	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr16	9216023	9216024	chr16:9216024:C:T	rs2965869	C	T	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr16	9304243	9304244	chr16:9304244:T:C	rs603506	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr16	9402437	9402438	chr16:9402438:G:A	rs1992074	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr16	9402702	9402703	chr16:9402703:G:A	rs512304	G	A	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr16	9402724	9402725	chr16:9402725:G:A	rs762350629	G	A	G	Sox3.mouse_HMG_1	3	1	-	3.402853088979145	-2.5799230291551756	AAACAATGCCAGCTTTG
chr16	9439443	9439444	chr16:9439444:G:A	rs774468298	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr16	9603643	9603644	chr16:9603644:A:T	rs9937082	A	T	A	Sox3.mouse_HMG_1	0	1	+	0.9956688715104599	-1.0274854538057872	AAGAAATGCTGTTGTTT
chr16	9650000	9650001	chr16:9650001:C:G	rs2540160	C	G	G	Sox3.mouse_HMG_1	3	1	+	4.1265588991701	-2.7804761204875534	AAACAAAGAAAGAGTTT
chr16	9687988	9687989	chr16:9687989:G:A	rs1345290	G	A	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr16	9687990	9687991	chr16:9687991:C:T	rs72779846	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr16	9813802	9813803	chr16:9813803:G:T	rs10468229	G	T	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr16	9896933	9896934	chr16:9896934:G:A	rs13338500	G	A	A	Sox3.mouse_HMG_1	9	1	-	1.6661391059894348	1.6304329811048652	AAACAATGACAAGATTT
chr16	9977037	9977038	chr16:9977038:A:G	rs3859123	A	G	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr16	10022841	10022842	chr16:10022842:C:A	rs9921906	C	A	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr16	10114248	10114249	chr16:10114249:G:A	rs72776014	G	A	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr16	10123048	10123049	chr16:10123049:C:T	rs7204513	C	T	t	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr16	10259249	10259250	chr16:10259250:A:G	rs2162694	A	G	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr16	10468515	10468516	chr16:10468516:G:T	rs117559300	G	T	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr16	10533647	10533648	chr16:10533648:G:C	rs12051183	G	C	G	Sox3.mouse_HMG_1	5	1	+	0.9186899124868444	0.8316785354972152	TAATAGTGGCAGTGTTA
chr16	10556325	10556326	chr16:10556326:C:T	rs79831871	C	T	c	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr16	10556358	10556359	chr16:10556359:C:T	rs6498085	C	T	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr16	10728755	10728756	chr16:10728756:T:A	rs74007512	T	A	T	Sox3.mouse_HMG_1	12	1	+	2.096284653029934	-3.4919074206031775	GAACTATGGTAATGTAT
chr16	11038006	11038007	chr16:11038007:G:C	rs9923455	G	C	C	Sox3.mouse_HMG_1	7	1	+	1.4941996407581049	-4.126492494166668	CTGCAATGAAATTTTTT
chr16	11129325	11129326	chr16:11129326:G:A	rs116550300	G	A	G	Sox3.mouse_HMG_1	0	1	+	5.465550987223385	6.838367652684924	GAACAATAACTCTGTTT
chr16	11274378	11274379	chr16:11274379:G:A	rs16958199	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr16	11367923	11367924	chr16:11367924:G:C	rs78544881	G	C	G	Sox3.mouse_HMG_1	16	1	+	4.752864859687799	2.116919834823929	AATCAATTGAATTGTGG
chr16	11439380	11439381	chr16:11439381:C:T	rs61194344	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr16	11585092	11585093	chr16:11585093:C:A	rs55947021	C	A	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr16	11636603	11636604	chr16:11636604:C:T	rs137899528	C	T	c	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr16	11714949	11714950	chr16:11714950:T:C	rs4781142	T	C	T	Sox3.mouse_HMG_1	6	1	-	4.016129541527461	4.016129541527461	TAACCAAAATATTGTTT
chr16	11728142	11728143	chr16:11728143:A:T	rs78083064	A	T	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr16	11745469	11745470	chr16:11745470:G:T	rs4780401	G	T	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr16	11754923	11754924	chr16:11754924:T:G	rs62040620	T	G	T	Sox3.mouse_HMG_1	12	1	+	0.30875358416145543	-6.259374486506167	AAAGAATACATGTGTTG
chr16	11785521	11785522	chr16:11785522:T:A	rs76864065	T	A	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr16	11813829	11813830	chr16:11813830:G:A	chr16:11813830:G:A	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr16	11813835	11813836	chr16:11813836:G:A	rs35345450	G	A	g	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr16	12076904	12076905	chr16:12076905:G:C	rs350244	G	C	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr16	12114094	12114095	chr16:12114095:C:T	rs145700901	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr16	12141273	12141274	chr16:12141274:A:G	rs72784673	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr16	12458965	12458966	chr16:12458966:A:C	rs147417766	A	C	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr16	12675618	12675619	chr16:12675619:C:A	rs1469403	C	A	A	Sox3.mouse_HMG_1	7	1	-	3.1287998765955827	1.5912507718534266	AAAGAAGGCCAGTGTTT
chr16	12681549	12681550	chr16:12681550:T:C	rs1713466	T	C	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr16	12716826	12716827	chr16:12716827:T:C	rs12445596	T	C	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr16	12759331	12759332	chr16:12759332:C:T	rs3859029	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr16	12773852	12773853	chr16:12773853:A:G	rs12920195	A	G	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr16	12777781	12777782	chr16:12777782:T:C	rs4536458	T	C	C	Sox3.mouse_HMG_1	5	1	-	2.3636956550680965	-4.362437822234362	TGCCAATTACAGTGTTA
chr16	12859800	12859801	chr16:12859801:T:C	rs12932051	T	C	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr16	13595312	13595313	chr16:13595313:A:C	rs115503401	A	C	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr16	13628203	13628204	chr16:13628204:G:T	rs74009048	G	T	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr16	13780596	13780597	chr16:13780597:T:C	rs9302505	T	C	T	Sox3.mouse_HMG_1	14	1	+	4.016462765701461	-2.0934281495472464	CTACAATGGCAGAGTTG
chr16	13811537	13811538	chr16:13811538:A:T	rs1573639	A	T	T	Sox3.mouse_HMG_1	5	1	+	1.9236081683070765	-4.984846865789332	AAACAATATAATAGGAT
chr16	13811538	13811539	chr16:13811539:T:C	rs1573640	T	C	C	Sox3.mouse_HMG_1	6	1	+	1.9236081683070765	-4.7224826013218415	AAACAATATAATAGGAT
chr16	13883408	13883409	chr16:13883409:G:T	rs9923843	G	T	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr16	13923868	13923869	chr16:13923869:T:A	rs181664152	T	A	A	Sox3.mouse_HMG_1	6	1	+	3.3082525097065187	-3.6002025243898914	AAAAAATTTTTTTGTTG
chr16	14057382	14057383	chr16:14057383:T:C	rs7205210	T	C	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr16	14539936	14539937	chr16:14539937:G:A	rs12447623	G	A	G	Sox3.mouse_HMG_1	2	1	+	2.9016390569654753	7.309574035945936	TAGCATTTGCATTGTTA
chr16	14978575	14978576	chr16:14978576:C:T	rs4985128	C	T	.	Sox3.mouse_HMG_1	0	1	-	9.973842654425242	11.346659319886781	GAACAAAAAAATTGTTT
chr16	15029757	15029758	chr16:15029758:G:T	rs56859518	G	T	.	Sox3.mouse_HMG_1	7	1	+	2.209755158760368	0.6722060540182125	CTACAATGAACTTGTAT
chr16	15509737	15509738	chr16:15509738:A:T	rs191332709	A	T	A	Sox3.mouse_HMG_1	4	1	+	1.2783755794696896	-5.0359328470341405	AGAGAGTGACATTGTTG
chr16	15642115	15642116	chr16:15642116:T:A	rs140441076	T	A	T	Sox3.mouse_HMG_1	0	1	-	1.0711426540980933	-0.9520116712181506	AAACAACGGCCTTGTAA
chr16	15812399	15812400	chr16:15812400:C:T	rs147963419	C	T	c	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr16	16021034	16021035	chr16:16021035:C:T	rs246214	C	T	c	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr16	16030150	16030151	chr16:16030151:C:T	rs11642957	C	T	t	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr16	16033520	16033521	chr16:16033521:C:T	rs45456095	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr16	16915051	16915052	chr16:16915052:A:G	rs2034682	A	G	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr16	17269478	17269479	chr16:17269479:A:G	rs62033193	A	G	A	Sox3.mouse_HMG_1	16	1	-	10.907014603871795	7.305217938250813	AAACTATGTTAGTGTTT
chr16	17292977	17292978	chr16:17292978:C:T	rs7206651	C	T	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr16	17341732	17341733	chr16:17341733:A:G	rs4782000	A	G	G	Sox3.mouse_HMG_1	5	1	+	2.312907831966345	-4.413225645336113	GAATCATTTAATTGTTT
chr16	17370185	17370186	chr16:17370186:G:A	rs117001239	G	A	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr16	17462343	17462344	chr16:17462344:G:A	rs142384186	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr16	17511736	17511737	chr16:17511737:A:G	rs4286097	A	G	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr16	17549653	17549654	chr16:17549654:G:A	rs1396646960	G	A	G	Sox3.mouse_HMG_1	8	1	+	1.3047457086921943	2.3311591837028294	AAACAATAGACATGTAT
chr16	17683405	17683406	chr16:17683406:T:A	rs8048263	T	A	t	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr16	18956051	18956052	chr16:18956052:A:G	rs8047908	A	G	a	Sox3.mouse_HMG_1	6	1	-	2.1003236770016844	-4.5457670926272336	AAACAATTGAAGTGGGG
chr16	19118688	19118689	chr16:19118689:T:G	rs3760088	T	G	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr16	19339880	19339881	chr16:19339881:C:T	rs4780791	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr16	19588736	19588737	chr16:19588737:A:G	rs226870	A	G	G	Sox3.mouse_HMG_1	10	1	+	1.661199761212229	-5.247045397759109	GGACAATGTCACTGTGA
chr16	19590250	19590251	chr16:19590251:A:G	rs189154352	A	G	A	Sox3.mouse_HMG_1	15	1	-	0.6698151674625996	-3.632686630332884	CAACATCTAAATTGTTA
chr16	19646164	19646165	chr16:19646165:C:T	rs62024069	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr16	19646179	19646180	chr16:19646180:A:G	rs61453609	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr16	19742011	19742012	chr16:19742012:T:C	rs1858975	T	C	C	Sox3.mouse_HMG_1	5	1	-	1.6563840932079446	-5.069749384094512	GAACAAGTTTGTTGTTG
chr16	19804760	19804761	chr16:19804761:G:A	rs148818991	G	A	G	Sox3.mouse_HMG_1	11	1	+	5.278094215948077	1.5436167889023296	ACACAATACCAGTGTGG
chr16	20300869	20300870	chr16:20300870:G:T	rs9933126	G	T	g	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr16	20410233	20410234	chr16:20410234:A:G	rs12920537	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr16	20711313	20711314	chr16:20711314:A:G	rs56139896	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr16	20740882	20740883	chr16:20740883:T:G	rs11863679	T	G	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr16	20754525	20754526	chr16:20754526:C:T	rs12926829	C	T	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr16	20763980	20763981	chr16:20763981:T:C	rs5710	T	C	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr16	21302328	21302329	chr16:21302329:A:G	rs72782853	A	G	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr16	21527028	21527029	chr16:21527029:G:A	rs545205	G	A	.	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr16	21527065	21527066	chr16:21527066:G:A	chr16:21527066:G:A	G	A	.	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr16	21527065	21527066	chr16:21527066:G:C	rs740592	G	C	.	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr16	21727665	21727666	chr16:21727666:G:C	rs7184989	G	C	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr16	21727670	21727671	chr16:21727671:G:A	rs12934324	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr16	21958972	21958973	chr16:21958973:G:A	rs149885430	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr16	22212149	22212150	chr16:22212150:A:G	rs76847256	A	G	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr16	22212187	22212188	chr16:22212188:T:C	rs754290	T	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr16	22776072	22776073	chr16:22776073:G:A	rs1424193	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr16	23002823	23002824	chr16:23002824:A:G	rs12919262	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr16	23013545	23013546	chr16:23013546:G:A	rs4783502	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr16	23041175	23041176	chr16:23041176:C:T	rs11649139	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr16	23120990	23120991	chr16:23120991:G:C	rs6497648	G	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr16	23132239	23132240	chr16:23132240:A:C	rs573017561	A	C	A	Sox3.mouse_HMG_1	2	1	+	12.338081359775073	5.9127464800537615	AAACAATAATATTTTTG
chr16	23314002	23314003	chr16:23314003:T:C	rs115248838	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr16	23876861	23876862	chr16:23876862:G:T	rs9940072	G	T	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr16	24036642	24036643	chr16:24036643:C:A	rs62026392	C	A	C	Sox3.mouse_HMG_1	13	1	+	5.064031733753001	5.064031733753001	GTACAATATAATTCTTT
chr16	24669117	24669118	chr16:24669118:A:G	rs16973907	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.3708984861332951	-5.355234991169161	TAACAATGTGAGTGGTA
chr16	24684018	24684019	chr16:24684019:A:G	rs7198632	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr16	24782419	24782420	chr16:24782420:C:T	rs2343606	C	T	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr16	25033999	25034000	chr16:25034000:T:G	rs28420227	T	G	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr16	25041789	25041790	chr16:25041790:C:A	rs4787673	C	A	C	Sox3.mouse_HMG_1	11	1	-	4.2119874798292605	6.33996614669014	AAACAATTAAAGAGATT
chr16	25061851	25061852	chr16:25061852:G:A	rs6497782	G	A	A	Sox3.mouse_HMG_1	13	1	+	0.6148941171890069	-5.493211672836909	GAGCCATGGCACTGTTT
chr16	25093508	25093509	chr16:25093509:T:C	rs951566348	T	C	T	Sox3.mouse_HMG_1	15	1	+	3.564011923285275	-0.738489874510208	AAACAACAATAGTTTTG
chr16	25093519	25093520	chr16:25093520:T:C	rs77439413	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr16	25109821	25109822	chr16:25109822:A:C	rs149495744	A	C	A	Sox3.mouse_HMG_1	8	1	+	4.394609783348722	3.2620493199696456	CAACAACAAAAGTGTAT
chr16	25140510	25140511	chr16:25140511:G:C	rs147636258	G	C	G	Sox3.mouse_HMG_1	15	1	-	1.933146454339135	1.6692293945285832	AAACAAAAACCTTGTCT
chr16	25466392	25466393	chr16:25466393:T:C	rs9935555	T	C	t	Sox3.mouse_HMG_1	1	1	-	0.12285711925520837	-4.204576224147486	CAACAATGCGATTGGAA
chr16	25948836	25948837	chr16:25948837:A:G	rs4075109	A	G	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr16	25948850	25948851	chr16:25948851:C:T	rs34709550	C	T	C	Sox3.mouse_HMG_1	8	1	+	4.766813861428306	5.07955308633885	CAGCAATGCCGTTGTTA
chr16	26353227	26353228	chr16:26353228:C:A	rs28592838	C	A	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr16	26505611	26505612	chr16:26505612:T:C	rs184771573	T	C	T	Sox3.mouse_HMG_1	1	1	-	4.953860070746829	0.6264267273441376	AAACATTGGAAATGTTT
chr16	26505811	26505812	chr16:26505812:A:G	rs79090407	A	G	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr16	26505819	26505820	chr16:26505820:G:A	rs35991710	G	A	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr16	26883599	26883600	chr16:26883600:A:G	rs56336353	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr16	26987537	26987538	chr16:26987538:T:G	rs62029850	T	G	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr16	26994047	26994048	chr16:26994048:T:G	rs8059250	T	G	T	Sox3.mouse_HMG_1	10	1	-	5.122656696287596	-1.4419987582936666	GAACAATAAAACTGTCA
chr16	26994067	26994068	chr16:26994068:G:A	rs72788911	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr16	27097864	27097865	chr16:27097865:A:G	rs143512479	A	G	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr16	27254440	27254441	chr16:27254441:C:G	rs111576311	C	G	C	Sox3.mouse_HMG_1	13	1	+	1.3985463207218132	7.506652110747728	AAACACTTTCAGTCTTA
chr16	27267305	27267306	chr16:27267306:G:A	rs72782383	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr16	27267314	27267315	chr16:27267315:C:T	rs116942558	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr16	27283926	27283927	chr16:27283927:G:C	rs572601731	G	C	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr16	27324537	27324538	chr16:27324538:A:C	rs561224871	A	C	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr16	27365006	27365007	chr16:27365007:A:G	rs145920810	A	G	A	Sox3.mouse_HMG_1	8	1	+	1.5897541723373865	0.5633406973267516	AAACCAAGAAAGTGTTA
chr16	27365018	27365019	chr16:27365019:G:A	chr16:27365019:G:A	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr16	27569390	27569391	chr16:27569391:A:G	rs4787972	A	G	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr16	27816059	27816060	chr16:27816060:G:A	rs1363749	G	A	A	Sox3.mouse_HMG_1	3	1	-	5.1156682768596	-0.8671078412747211	TAACAATAATATGGTGA
chr16	28107034	28107035	chr16:28107035:T:A	rs72789638	T	A	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr16	28543122	28543123	chr16:28543123:G:A	rs564483187	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr16	28636384	28636385	chr16:28636385:C:T	rs137991131	C	T	.	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr16	28987627	28987628	chr16:28987628:C:T	rs7202093	C	T	C	Sox3.mouse_HMG_1	12	1	-	-0.029136796206857718	0.9507992008276532	AAACAAAGCCAGGGTAT
chr16	29155459	29155460	chr16:29155460:A:G	rs115794121	A	G	.	Sox3.mouse_HMG_1	8	1	+	1.443711096510878	0.41729762150024186	CAAAAATAAAAGTTTTT
chr16	29225619	29225620	chr16:29225620:T:C	rs2302724	T	C	t	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr16	29285399	29285400	chr16:29285400:G:C	rs11862473	G	C	.	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr16	29922728	29922729	chr16:29922729:A:G	rs12932403	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr16	30451313	30451314	chr16:30451314:T:A	rs8058719	T	A	a	Sox3.mouse_HMG_1	10	1	-	0.46355477360357733	-6.349380205563437	AAAAAAAGACATTCTTT
chr16	31732607	31732608	chr16:31732608:A:G	rs929208	A	G	g	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr16	35914867	35914868	chr16:35914868:G:A	rs528514127	G	A	.	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr16	36335958	36335959	chr16:36335959:T:A	rs1216695590	T	A	.	Sox3.mouse_HMG_1	12	1	+	3.0460895209523704	-2.542102552680741	CAACAAAAAGAGTGTTT
chr16	36335975	36335976	chr16:36335976:A:G	rs1317167639	A	G	.	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr16	37073790	37073791	chr16:37073791:A:G	rs1318872984	A	G	.	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr16	47980534	47980535	chr16:47980535:C:T	rs62057537	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr16	48383077	48383078	chr16:48383078:T:G	rs114376466	T	G	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr16	49061651	49061652	chr16:49061652:C:T	rs116887142	C	T	C	Sox3.mouse_HMG_1	2	1	-	1.2674634741887818	5.675398453169243	GAGCAGTGACAGTGTCT
chr16	49334276	49334277	chr16:49334277:A:G	rs36507	A	G	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr16	49426292	49426293	chr16:49426293:A:G	rs80270640	A	G	A	Sox3.mouse_HMG_1	14	1	+	1.1836755463564985	0.04250364326959283	AAGCAATGAAGTTGATG
chr16	49585006	49585007	chr16:49585007:C:T	rs7191293	C	T	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr16	50239383	50239384	chr16:50239384:T:A	rs7190107	T	A	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr16	50449981	50449982	chr16:50449982:A:G	rs56932456	A	G	G	Sox3.mouse_HMG_1	12	1	-	0.012598564629671682	-6.19386702058818	GAACCATGAGACTGTTT
chr16	50482243	50482244	chr16:50482244:A:G	rs75787717	A	G	A	Sox3.mouse_HMG_1	5	1	+	0.7114997350886755	-6.014633742213783	AAACAACTTAGGTGTTT
chr16	50653094	50653095	chr16:50653095:C:T	rs75663451	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr16	50653103	50653104	chr16:50653104:C:T	rs2066849	C	T	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr16	50709026	50709027	chr16:50709027:G:A	rs13380741	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr16	50730924	50730925	chr16:50730925:G:A	rs2357791	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr16	50753571	50753572	chr16:50753572:A:G	rs7342715	A	G	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr16	51407039	51407040	chr16:51407040:T:C	rs4784260	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr16	51764111	51764112	chr16:51764112:C:T	rs4784662	C	T	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr16	52131306	52131307	chr16:52131307:A:C	rs73589588	A	C	A	Sox3.mouse_HMG_1	8	1	+	0.6168778920914573	-0.515682571287619	AAACAATCATGCTGTTG
chr16	52468658	52468659	chr16:52468659:A:C	rs9928698	A	C	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr16	52709112	52709113	chr16:52709113:C:A	rs4572397	C	A	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr16	52873654	52873655	chr16:52873655:G:A	rs1021103491	G	A	-	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr16	53099295	53099296	chr16:53099296:T:C	rs577230242	T	C	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr16	53147718	53147719	chr16:53147719:A:G	rs79243132	A	G	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr16	53529414	53529415	chr16:53529415:T:C	rs73614566	T	C	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr16	53695180	53695181	chr16:53695181:G:A	rs568908184	G	A	G	Sox3.mouse_HMG_1	13	1	+	3.0399412147509084	-3.0681645752750084	AAAGAAAAAAATTGTTA
chr16	53816990	53816991	chr16:53816991:C:T	rs56057753	C	T	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr16	53848744	53848745	chr16:53848745:C:T	rs12448529	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr16	53922139	53922140	chr16:53922140:C:T	rs16952649	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr16	53923087	53923088	chr16:53923088:G:A	rs570366223	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr16	53946888	53946889	chr16:53946889:T:A	rs113964298	T	A	T	Sox3.mouse_HMG_1	15	1	+	6.789137240759833	3.2922936189673617	CAGTAATGATATTGTTA
chr16	54067001	54067002	chr16:54067002:A:G	rs2075204	A	G	A	Sox3.mouse_HMG_1	6	1	-	1.5685723168921715	-5.077518452736749	GAGCAATAACATTAATG
chr16	54067018	54067019	chr16:54067019:C:T	rs13338113	C	T	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr16	54214308	54214309	chr16:54214309:T:A	rs55760183	T	A	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr16	54417967	54417968	chr16:54417968:G:A	rs7186341	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr16	54522603	54522604	chr16:54522604:G:A	rs1420292	G	A	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr16	54742690	54742691	chr16:54742691:T:C	rs1548912	T	C	T	Sox3.mouse_HMG_1	13	1	-	2.417570088548468	8.525675878574384	GAAAAATGAAAGTATTT
chr16	54926206	54926207	chr16:54926207:A:G	rs114844221	A	G	A	Sox3.mouse_HMG_1	4	1	+	0.6931911520220501	-6.119133939955188	AATTAATGGTCTTGTTT
chr16	55044537	55044538	chr16:55044538:G:A	rs936879	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr16	55076029	55076030	chr16:55076030:C:A	rs7198804	C	A	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr16	55267974	55267975	chr16:55267975:C:T	rs30978	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr16	55275718	55275719	chr16:55275719:A:G	rs8051914	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr16	55276537	55276538	chr16:55276538:C:T	rs9938848	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr16	55321867	55321868	chr16:55321868:C:T	rs115881607	C	T	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr16	55392218	55392219	chr16:55392219:G:C	rs41140	G	C	G	Sox3.mouse_HMG_1	11	1	-	1.8019658526059872	5.73144329470546	GAGCAATGACCCTGTTT
chr16	55649363	55649364	chr16:55649364:T:G	rs1345426	T	G	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr16	55669240	55669241	chr16:55669241:C:T	rs55648220	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr16	55741892	55741893	chr16:55741893:G:C	rs9929539	G	C	g	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr16	55811540	55811541	chr16:55811541:C:T	rs151069757	C	T	c	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr16	55905727	55905728	chr16:55905728:A:T	rs1420220	A	T	T	Sox3.mouse_HMG_1	12	1	-	3.0702649791831664	-2.517927094449946	GAACCAGGACAGTGTTT
chr16	55965665	55965666	chr16:55965666:A:G	rs11865906	A	G	A	Sox3.mouse_HMG_1	11	1	-	1.274469048782535	-4.782987060177818	AAACATTGCCATTGGAG
chr16	56116422	56116423	chr16:56116423:A:G	rs75549919	A	G	A	Sox3.mouse_HMG_1	8	1	+	5.515208321316693	4.488794846306057	GAACTATGAGATTGTTG
chr16	56266746	56266747	chr16:56266747:T:A	rs56256601	T	A	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr16	56370790	56370791	chr16:56370791:C:T	rs2617849	C	T	T	Sox3.mouse_HMG_1	13	1	-	2.6072649708942572	-3.5008408191316587	AAACATTTATAGAGTTA
chr16	56606655	56606656	chr16:56606656:C:T	rs545161210	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr16	56708447	56708448	chr16:56708448:A:C	rs4783954	A	C	A	Sox3.mouse_HMG_1	7	1	-	1.6245810517585648	3.1621301565007203	CAACAATTGTCTTGGTA
chr16	57018071	57018072	chr16:57018072:C:A	rs16965070	C	A	t	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr16	57132065	57132066	chr16:57132066:G:A	rs16966632	G	A	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr16	57289731	57289732	chr16:57289732:G:A	rs11076187	G	A	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr16	57310377	57310378	chr16:57310378:G:A	rs144889122	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr16	57325708	57325709	chr16:57325709:A:G	rs77265957	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr16	57642988	57642989	chr16:57642989:G:A	rs17325839	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr16	57694642	57694643	chr16:57694643:T:C	rs113061579	T	C	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr16	58152095	58152096	chr16:58152096:A:C	rs16959717	A	C	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr16	58413433	58413434	chr16:58413434:C:A	rs8058736	C	A	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr16	58506157	58506158	chr16:58506158:C:G	rs2550426	C	G	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr16	58904526	58904527	chr16:58904527:C:T	rs74620361	C	T	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr16	59149107	59149108	chr16:59149108:A:G	rs62060337	A	G	A	Sox3.mouse_HMG_1	3	1	-	3.109656280969344	9.092432399103664	AAATTATTCCAGTGTTT
chr16	59570621	59570622	chr16:59570622:T:C	rs13338586	T	C	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr16	59665083	59665084	chr16:59665084:G:C	rs8046026	G	C	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr16	59878696	59878697	chr16:59878697:T:C	rs77574902	T	C	T	Sox3.mouse_HMG_1	9	1	-	1.375940742918548	-3.2070588768027832	AATCAATGCATGTGTTA
chr16	59878720	59878721	chr16:59878721:T:C	rs72787758	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr16	59907595	59907596	chr16:59907596:A:G	rs9938886	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr16	60210034	60210035	chr16:60210035:C:G	rs77080679	C	G	c	Sox3.mouse_HMG_1	9	1	-	1.1085969339723727	7.145240940522804	AGACAATAAGAGTATTT
chr16	60612271	60612272	chr16:60612272:T:C	rs12925946	T	C	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr16	60646575	60646576	chr16:60646576:A:G	rs16962408	A	G	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr16	60727823	60727824	chr16:60727824:T:G	rs16962511	T	G	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr16	61721637	61721638	chr16:61721638:A:C	rs186136258	A	C	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr16	62034873	62034874	chr16:62034874:A:G	rs1249861156	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.8460726712084536	-4.880060806094001	AAACAATTAATGTGGTT
chr16	62162718	62162719	chr16:62162719:C:T	rs10852401	C	T	C	Sox3.mouse_HMG_1	3	1	+	1.7027332964630746	-4.2800428216712465	ATACAATTACATTCTGA
chr16	62596982	62596983	chr16:62596983:A:G	rs1040586241	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr16	62609479	62609480	chr16:62609480:C:T	rs420394	C	T	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr16	62858130	62858131	chr16:62858131:C:A	rs9926558	C	A	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr16	62960278	62960279	chr16:62960279:A:G	rs43172	A	G	A	Sox3.mouse_HMG_1	5	1	-	0.3803893098311769	0.4756994896355017	GAACATTGCCATTATCT
chr16	63063102	63063103	chr16:63063103:G:C	rs7206149	G	C	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr16	63458616	63458617	chr16:63458617:T:C	rs59380206	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.853650640879213	-3.8724828364232415	GAACAATTTAACTGCTT
chr16	63497402	63497403	chr16:63497403:A:G	rs1423921	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr16	63876440	63876441	chr16:63876441:A:T	rs2447004	A	T	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr16	64074970	64074971	chr16:64074971:T:C	rs16966950	T	C	T	Sox3.mouse_HMG_1	4	1	-	4.317344234069148	-2.4949808579080868	GAACAATACTAAAGTTA
chr16	64151987	64151988	chr16:64151988:A:G	rs58585317	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr16	64163139	64163140	chr16:64163140:T:C	rs13338569	T	C	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr16	64269864	64269865	chr16:64269865:T:A	rs1437150	T	A	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr16	64287641	64287642	chr16:64287642:G:C	rs62039798	G	C	G	Sox3.mouse_HMG_1	3	1	+	1.0526220441067409	7.959657063764393	CAAGAATGAAAGTCTTG
chr16	64363242	64363243	chr16:64363243:A:G	rs146413077	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr16	64397300	64397301	chr16:64397301:A:T	chr16:64397301:A:T	A	T	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr16	64408996	64408997	chr16:64408997:A:G	rs9941053	A	G	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr16	64495010	64495011	chr16:64495011:A:C	rs11644128	A	C	A	Sox3.mouse_HMG_1	2	1	+	2.718995911453289	-3.7063389682680254	GAAAAATGGAGTTGTTT
chr16	64625847	64625848	chr16:64625848:G:T	rs4448963	G	T	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr16	64639049	64639050	chr16:64639050:A:G	rs7205933	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr16	64654207	64654208	chr16:64654208:G:A	rs7191764	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr16	64865840	64865841	chr16:64865841:G:A	rs2113230	G	A	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr16	64893605	64893606	chr16:64893606:C:T	rs78043738	C	T	C	Sox3.mouse_HMG_1	7	1	-	7.482589106393243	6.986518786615932	CAGAAATGACATTGTTT
chr16	64920448	64920449	chr16:64920449:T:C	rs4967877	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr16	65225169	65225170	chr16:65225170:T:C	rs9934772	T	C	T	Sox3.mouse_HMG_1	12	1	+	5.831376254832151	-0.3750893303857009	CACCAATAACAATGTTT
chr16	65350399	65350400	chr16:65350400:G:T	rs73578346	G	T	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr16	65404682	65404683	chr16:65404683:G:C	rs138892820	G	C	G	Sox3.mouse_HMG_1	9	1	-	1.515397821250226	-4.521246185300206	TATCAATTCCAGTGTGA
chr16	65601498	65601499	chr16:65601499:A:G	rs6499011	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr16	65936214	65936215	chr16:65936215:T:A	rs1094969	T	A	T	Sox3.mouse_HMG_1	11	1	+	1.6394277314742338	-4.223028362432394	AAAAAAAGATATTGTAA
chr16	65938237	65938238	chr16:65938238:C:A	rs1103776	C	A	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr16	66294067	66294068	chr16:66294068:C:T	rs73587145	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr16	66407338	66407339	chr16:66407339:T:C	rs193246188	T	C	T	Sox3.mouse_HMG_1	4	1	-	6.058574912886805	-0.7537501790904323	GGACATTTACATTGTTT
chr16	66887195	66887196	chr16:66887196:A:C	rs141320847	A	C	A	Sox3.mouse_HMG_1	15	1	+	2.9163040046357214	2.110645828632709	CAAAAATAAAAGTGTAA
chr16	67030314	67030315	chr16:67030315:C:T	rs115088567	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr16	67295858	67295859	chr16:67295859:T:C	rs9924145	T	C	C	Sox3.mouse_HMG_1	15	1	+	2.352898626502875	-1.9496031712926083	AAACAATTCTGGTGCTT
chr16	67514515	67514516	chr16:67514516:G:A	rs185392543	G	A	g	Sox3.mouse_HMG_1	3	1	-	3.6638463571746818	-2.3189297609596387	AAACAATTTTTTTTTTG
chr16	67555724	67555725	chr16:67555725:C:T	chr16:67555725:C:T	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr16	68238731	68238732	chr16:68238732:C:G	rs8059575	C	G	G	Sox3.mouse_HMG_1	7	1	-	-0.3231858530233814	-5.943877987948153	GAAGAATGCAAGGGTTG
chr16	68328319	68328320	chr16:68328320:C:T	rs147713014	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr16	68646747	68646748	chr16:68646748:C:G	rs2862778	C	G	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr16	68775303	68775304	chr16:68775304:C:T	rs13334326	C	T	C	Sox3.mouse_HMG_1	13	1	-	1.3127813003625592	-4.795324489663356	TGATAATGGCATTGTGG
chr16	68885093	68885094	chr16:68885094:T:C	rs79565258	T	C	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr16	69045048	69045049	chr16:69045049:C:T	rs12929269	C	T	c	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr16	69402693	69402694	chr16:69402694:G:T	rs1281379193	G	T	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr16	69866722	69866723	chr16:69866723:C:T	rs72785026	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr16	70162235	70162236	chr16:70162236:T:C	rs111868278	T	C	T	Sox3.mouse_HMG_1	11	1	+	5.427874101759892	-0.6295820072004605	TAAAAATGCCATTGTAA
chr16	70628082	70628083	chr16:70628083:T:C	rs4985412	T	C	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr16	70628087	70628088	chr16:70628088:T:C	rs4985413	T	C	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr16	70731224	70731225	chr16:70731225:G:A	rs60028268	G	A	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr16	70803715	70803716	chr16:70803716:G:T	rs77069808	G	T	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr16	71294446	71294447	chr16:71294447:T:C	rs2883928	T	C	T	Sox3.mouse_HMG_1	15	1	+	3.4911241224757594	-0.8113776753197236	TAATAATTGTATTCTTT
chr16	71356419	71356420	chr16:71356420:A:G	rs1007634	A	G	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr16	71356426	71356427	chr16:71356427:A:G	rs35839403	A	G	G	Sox3.mouse_HMG_1	16	1	-	1.325398119477292	-2.27639854614369	AAGCAAAGCCAGTGTCT
chr16	71484750	71484751	chr16:71484751:T:C	rs13331092	T	C	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr16	71657373	71657374	chr16:71657374:G:A	rs999234620	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr16	71746373	71746374	chr16:71746374:T:G	rs4788553	T	G	G	Sox3.mouse_HMG_1	12	1	+	1.3866861875078218	-5.1814418831598	AAAAAGTGTAAGTGTTG
chr16	71783266	71783267	chr16:71783267:A:C	rs11866795	A	C	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr16	72000964	72000965	chr16:72000965:T:C	rs7185215	T	C	T	Sox3.mouse_HMG_1	8	1	+	2.1560826408100016	1.8433434158994593	AATAAATGTTATTGTGT
chr16	72150059	72150060	chr16:72150060:G:A	rs10852511	G	A	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr16	72346884	72346885	chr16:72346885:T:C	rs17607285	T	C	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr16	72427564	72427565	chr16:72427565:A:T	rs2017748	A	T	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr16	72612133	72612134	chr16:72612134:C:T	rs1366847	C	T	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr16	73046231	73046232	chr16:73046232:T:C	rs62055073	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.5083392383448868	-5.217794238957569	AAATAATTGAAGGGTTT
chr16	73106853	73106854	chr16:73106854:A:G	rs8045933	A	G	A	Sox3.mouse_HMG_1	11	1	-	1.9684082608004363	-4.0890478481599155	GACCAAGTGCATTGTTG
chr16	73163091	73163092	chr16:73163092:A:G	rs11075970	A	G	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr16	73485188	73485189	chr16:73485189:T:C	rs8044612	T	C	t	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr16	73716591	73716592	chr16:73716592:C:T	rs73599955	C	T	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr16	74040649	74040650	chr16:74040650:G:C	rs4889200	G	C	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr16	74285719	74285720	chr16:74285720:A:C	rs75711595	A	C	.	Sox3.mouse_HMG_1	9	1	-	1.8143146556673664	-4.186623225998496	GAACATTTGTATTGCTA
chr16	74556655	74556656	chr16:74556656:C:T	rs117517270	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr16	74563928	74563929	chr16:74563929:A:G	rs9939922	A	G	A	Sox3.mouse_HMG_1	6	1	-	1.6770830156686645	-4.9690077539602555	TAAAAATAAAAGTGTCA
chr16	74758142	74758143	chr16:74758143:C:T	rs7203621	C	T	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr16	75047816	75047817	chr16:75047817:A:G	rs4383171	A	G	a	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr16	75147616	75147617	chr16:75147617:A:G	rs12929720	A	G	a	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr16	75147655	75147656	chr16:75147656:T:C	rs8059411	T	C	t	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr16	75196331	75196332	chr16:75196332:C:T	rs1559362	C	T	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr16	75219862	75219863	chr16:75219863:A:T	rs11149808	A	T	a	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr16	75219873	75219874	chr16:75219874:T:C	rs150177990	T	C	t	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr16	75219905	75219906	chr16:75219906:T:A	rs6564239	T	A	t	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr16	75221067	75221068	chr16:75221068:G:C	rs8048956	G	C	g	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr16	75271432	75271433	chr16:75271433:C:A	rs4888368	C	A	C	Sox3.mouse_HMG_1	3	1	+	1.128902665609377	-5.595810797254322	GAACAATTTTTGTTTTT
chr16	75310134	75310135	chr16:75310135:T:C	rs145212247	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr16	75310577	75310578	chr16:75310578:C:T	rs10514393	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr16	75337845	75337846	chr16:75337846:C:G	rs3863445	C	G	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr16	75385474	75385475	chr16:75385475:G:A	rs11149818	G	A	G	Sox3.mouse_HMG_1	13	1	+	0.5414765498284065	-5.56662924019751	CAACAAAGTTTTTGTAT
chr16	75403153	75403154	chr16:75403154:G:C	rs140178324	G	C	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr16	75430103	75430104	chr16:75430104:G:C	rs11149833	G	C	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr16	75430108	75430109	chr16:75430109:C:T	rs247441	C	T	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr16	75477074	75477075	chr16:75477075:A:C	rs4888432	A	C	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr16	75605595	75605596	chr16:75605596:T:G	rs74750114	T	G	T	Sox3.mouse_HMG_1	4	1	-	1.322865391908001	-5.402448323079608	CAACAATGTGGGTGTTA
chr16	75649062	75649063	chr16:75649063:C:T	rs1356258027	C	T	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr16	75792992	75792993	chr16:75792993:C:T	rs150085746	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr16	75897335	75897336	chr16:75897336:C:T	rs117481901	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr16	76202213	76202214	chr16:76202214:C:G	rs11149879	C	G	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr16	76345523	76345524	chr16:76345524:C:T	rs78786642	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr16	76391763	76391764	chr16:76391764:C:G	rs4511566	C	G	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr16	76409652	76409653	chr16:76409653:G:C	rs34449971	G	C	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr16	76410821	76410822	chr16:76410822:A:G	rs62051222	A	G	A	Sox3.mouse_HMG_1	8	1	+	2.428187781554087	1.4017743065434505	AAAAAATAATACTGTAG
chr16	76487630	76487631	chr16:76487631:T:C	rs12926636	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr16	76849059	76849060	chr16:76849060:C:G	rs74443760	C	G	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr16	76984205	76984206	chr16:76984206:T:C	rs72794527	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr16	77043391	77043392	chr16:77043392:G:A	rs285006	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr16	77043428	77043429	chr16:77043429:T:A	rs285007	T	A	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr16	77093802	77093803	chr16:77093803:A:T	rs35050281	A	T	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr16	77208564	77208565	chr16:77208565:A:G	rs73632739	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr16	77274703	77274704	chr16:77274704:G:A	rs1428853	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr16	77290962	77290963	chr16:77290963:A:G	rs540037553	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr16	77290973	77290974	chr16:77290974:C:T	rs80060947	C	T	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr16	77331892	77331893	chr16:77331893:A:T	rs2562110	A	T	A	Sox3.mouse_HMG_1	4	1	+	2.7351847152351008	-3.579123711268725	AAAAAATAGAATTTTTA
chr16	77536792	77536793	chr16:77536793:C:T	rs1493888	C	T	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr16	77575593	77575594	chr16:77575594:A:G	rs8047703	A	G	A	Sox3.mouse_HMG_1	6	1	-	5.945975017225534	-0.7001157524033839	GAACAATGATAAAGTTA
chr16	77722224	77722225	chr16:77722225:A:G	rs9924012	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr16	77755820	77755821	chr16:77755821:C:T	rs78917175	C	T	c	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr16	77834931	77834932	chr16:77834932:A:T	chr16:77834932:A:T	A	T	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr16	77866251	77866252	chr16:77866252:T:C	rs11649616	T	C	T	Sox3.mouse_HMG_1	14	1	+	0.709942257906485	-5.399948657342223	GAATTATAGCATTGTCT
chr16	77927060	77927061	chr16:77927061:C:T	rs76670501	C	T	C	Sox3.mouse_HMG_1	0	1	-	-0.21857026963800147	1.1542463958235398	GGGCCATAACAGTGTTG
chr16	77967446	77967447	chr16:77967447:T:C	rs422508	T	C	T	Sox3.mouse_HMG_1	5	1	-	5.4346778282398915	-1.2914556490625648	AAGAAATGATATTGTTC
chr16	77988084	77988085	chr16:77988085:A:C	chr16:77988085:A:C	A	C	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr16	78222144	78222145	chr16:78222145:G:A	rs13333436	G	A	G	Sox3.mouse_HMG_1	8	1	+	3.5321808413054243	4.558594316316059	GAACAATGGCATTTTCC
chr16	78238223	78238224	chr16:78238224:G:A	rs74027956	G	A	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr16	78238536	78238537	chr16:78238537:A:G	rs148870459	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr16	78281737	78281738	chr16:78281738:A:G	rs9924232	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr16	78290144	78290145	chr16:78290145:C:T	rs9921980	C	T	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr16	78310220	78310221	chr16:78310221:T:G	rs7204400	T	G	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr16	78322325	78322326	chr16:78322326:C:G	rs62034372	C	G	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr16	78325842	78325843	chr16:78325843:T:C	chr16:78325843:T:C	T	C	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr16	78326955	78326956	chr16:78326956:C:G	rs72792356	C	G	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr16	78344051	78344052	chr16:78344052:C:T	rs62034410	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr16	78376324	78376325	chr16:78376325:G:A	rs72796047	G	A	g	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr16	78428127	78428128	chr16:78428128:A:G	rs4597339	A	G	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr16	78432860	78432861	chr16:78432861:A:C	rs3764342	A	C	A	Sox3.mouse_HMG_1	9	1	-	0.46520334234053323	-5.53573453932533	GGACAATGTTATTACTG
chr16	78488599	78488600	chr16:78488600:G:C	chr16:78488600:G:C	G	C	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr16	78563417	78563418	chr16:78563418:T:C	rs16948096	T	C	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr16	78571866	78571867	chr16:78571867:A:G	rs72803966	A	G	A	Sox3.mouse_HMG_1	15	1	-	-0.10731248868468402	-4.4098142864801675	CAGCAATGCCTTTTTTT
chr16	78571895	78571896	chr16:78571896:G:A	rs564431404	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr16	78665405	78665406	chr16:78665406:A:G	rs116271025	A	G	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr16	78768871	78768872	chr16:78768872:C:T	rs74889352	C	T	C	Sox3.mouse_HMG_1	16	1	-	0.8373221256154524	0.40349068089434525	AAACAACGGCATTGGCG
chr16	78822682	78822683	chr16:78822683:C:A	rs6420407	C	A	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr16	78912489	78912490	chr16:78912490:A:G	rs16948847	A	G	A	Sox3.mouse_HMG_1	11	1	-	0.6334354870799708	-5.424020621880382	CAGCAATGCAATTGACA
chr16	78927975	78927976	chr16:78927976:T:G	rs9936628	T	G	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr16	78939683	78939684	chr16:78939684:T:C	rs12925128	T	C	C	Sox3.mouse_HMG_1	6	1	+	1.8003621635867781	-4.845728606042145	GAAACATGAAAGTGTTT
chr16	78947638	78947639	chr16:78947639:G:A	rs74032448	G	A	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr16	79079721	79079722	chr16:79079722:A:G	rs12102852	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr16	79166580	79166581	chr16:79166581:A:G	rs11150141	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr16	79210198	79210199	chr16:79210199:T:A	rs11150144	T	A	A	Sox3.mouse_HMG_1	11	1	+	1.6907940921783784	-4.171662001728249	GACCAACTCCATTGTTA
chr16	79212780	79212781	chr16:79212781:C:T	rs60604414	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr16	79212828	79212829	chr16:79212829:G:C	rs35014959	G	C	g	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr16	79261795	79261796	chr16:79261796:C:G	chr16:79261796:C:G	C	G	C	Sox3.mouse_HMG_1	9	1	+	2.5323631420074273	-3.504280864543004	AGACAATTTCATTGACA
chr16	79279937	79279938	chr16:79279938:T:C	rs906797	T	C	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr16	79327303	79327304	chr16:79327304:C:T	rs1876763	C	T	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr16	79470133	79470134	chr16:79470134:G:C	rs532814172	G	C	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr16	79492327	79492328	chr16:79492328:A:G	rs80341802	A	G	A	Sox3.mouse_HMG_1	9	1	-	1.6297263439375569	1.6654324688221247	TATTAATTATAGTGTTG
chr16	79641590	79641591	chr16:79641591:G:T	rs12935124	G	T	G	Sox3.mouse_HMG_1	13	1	+	-0.34312095176290575	-6.7122405671584415	GAACAGTCACAATGTTG
chr16	79659363	79659364	chr16:79659364:T:C	rs55862943	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr16	79674153	79674154	chr16:79674154:T:C	rs8051069	T	C	T	Sox3.mouse_HMG_1	14	1	+	1.4649413870727235	-4.644949528175983	AACCTATTACATTGTAG
chr16	79765420	79765421	chr16:79765421:G:C	rs67364537	G	C	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr16	79769996	79769997	chr16:79769997:C:A	rs4506911	C	A	C	Sox3.mouse_HMG_1	13	1	-	5.859504108018474	-0.5096155073770601	TAGTAATAATATTGTTA
chr16	79840684	79840685	chr16:79840685:A:G	rs16951485	A	G	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr16	79898320	79898321	chr16:79898321:G:A	rs4548890	G	A	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr16	79985730	79985731	chr16:79985731:C:G	rs62042298	C	G	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr16	79985770	79985771	chr16:79985771:T:A	rs190361668	T	A	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr16	79989652	79989653	chr16:79989653:C:T	rs149568020	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr16	80007568	80007569	chr16:80007569:C:T	rs9926410	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr16	80010515	80010516	chr16:80010516:T:C	rs148347694	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr16	80061908	80061909	chr16:80061909:T:C	rs16952212	T	C	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr16	80114976	80114977	chr16:80114977:A:C	rs28421400	A	C	A	Sox3.mouse_HMG_1	15	1	-	1.9316837344665558	-2.634735123139479	AAACAATAAAAGTTGTA
chr16	80233501	80233502	chr16:80233502:A:G	rs9938674	A	G	G	Sox3.mouse_HMG_1	9	1	+	4.178708897808532	-0.4042907219127989	AAATAATGCAACTGTTA
chr16	80234422	80234423	chr16:80234423:C:T	rs1518603	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr16	80271581	80271582	chr16:80271582:A:T	rs11863255	A	T	A	Sox3.mouse_HMG_1	12	1	-	1.640157768063161	-3.9480343055699505	AAACCATGGAAATGTAT
chr16	80277442	80277443	chr16:80277443:C:G	rs9923010	C	G	G	Sox3.mouse_HMG_1	7	1	-	0.5169524479786568	-5.103739686946116	AAGCCATGACAGTGGTT
chr16	80346900	80346901	chr16:80346901:G:A	rs10514493	G	A	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr16	80512075	80512076	chr16:80512076:A:G	rs11150289	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr16	80674255	80674256	chr16:80674256:T:C	rs186512290	T	C	T	Sox3.mouse_HMG_1	6	1	+	0.2155533121633405	-6.43053745746558	AAGCAATGCACGTGTCT
chr16	80719843	80719844	chr16:80719844:A:G	rs3100180	A	G	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr16	80752726	80752727	chr16:80752727:G:T	rs888549780	G	T	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr16	80927762	80927763	chr16:80927763:A:G	rs2161295	A	G	A	Sox3.mouse_HMG_1	0	1	+	8.706802549383957	7.333985883922419	AAACAATGGTGGTGTTA
chr16	80938344	80938345	chr16:80938345:C:T	rs367928079	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr16	80993511	80993512	chr16:80993512:A:G	rs2602450	A	G	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr16	80993536	80993537	chr16:80993537:G:A	rs2549860	G	A	A	Sox3.mouse_HMG_1	3	1	-	0.5474175472719469	-5.435358570862376	TGACTATGGCATTGTGA
chr16	81001559	81001560	chr16:81001560:C:T	rs62056086	C	T	C	Sox3.mouse_HMG_1	13	1	-	1.0459509208933717	-5.062154869132544	ATACATTAATAATGTTG
chr16	81001574	81001575	chr16:81001575:T:C	rs2970081	T	C	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr16	81080413	81080414	chr16:81080414:G:A	rs16954580	G	A	G	Sox3.mouse_HMG_1	7	1	+	0.661679271845289	0.1656089520679781	CATCAATGACAGTGGAT
chr16	81148502	81148503	chr16:81148503:A:G	rs9940095	A	G	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr16	81148511	81148512	chr16:81148512:G:C	rs9929059	G	C	G	Sox3.mouse_HMG_1	13	1	-	5.788585150989057	11.896690941014972	AAACAAAGACATTCTTA
chr16	81177308	81177309	chr16:81177309:T:G	rs8049408	T	G	T	Sox3.mouse_HMG_1	2	1	+	5.966221441291733	7.460373198268037	CGTCAATGAAATTGTTG
chr16	81514081	81514082	chr16:81514082:T:G	rs8182218	T	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr16	81602113	81602114	chr16:81602114:A:C	rs75173720	A	C	A	Sox3.mouse_HMG_1	15	1	-	0.5884290020834854	-3.9779898555225497	GGACAGTGCCACTGTTT
chr16	81672925	81672926	chr16:81672926:G:A	rs13334224	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr16	81692978	81692979	chr16:81692979:A:C	rs11642818	A	C	A	Sox3.mouse_HMG_1	15	1	-	-0.4028006931246225	-4.969219550730658	AAACAAAGGCCTTCTTT
chr16	81718074	81718075	chr16:81718075:T:A	rs570097402	T	A	T	Sox3.mouse_HMG_1	15	1	+	4.608876894734682	1.1120332729422113	GAAGAATGAAAATGTTT
chr16	81721207	81721208	chr16:81721208:A:G	rs564558913	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr16	81943099	81943100	chr16:81943100:T:G	rs4640176	T	G	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr16	81947132	81947133	chr16:81947133:T:C	rs72824943	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr16	82072693	82072694	chr16:82072694:G:A	rs2966245	G	A	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr16	82124673	82124674	chr16:82124674:C:A	rs6564969	C	A	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr16	82194470	82194471	chr16:82194471:A:G	rs2042426	A	G	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr16	82197966	82197967	chr16:82197967:C:G	rs142415206	C	G	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr16	82197973	82197974	chr16:82197974:A:G	rs2911412	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.4703288122465255	-3.2558046650559307	ATACAATGGCATTGAGG
chr16	82360752	82360753	chr16:82360753:C:T	rs74922812	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr16	82369472	82369473	chr16:82369473:G:T	rs1809717	G	T	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr16	82498872	82498873	chr16:82498873:G:T	rs55878175	G	T	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr16	82700758	82700759	chr16:82700759:T:C	rs9788842	T	C	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr16	82735424	82735425	chr16:82735425:A:G	rs16958374	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr16	82756102	82756103	chr16:82756103:T:C	rs4783264	T	C	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr16	82780231	82780232	chr16:82780232:C:A	rs12925326	C	A	A	Sox3.mouse_HMG_1	7	1	-	1.1191949512731576	-0.4183541534689976	AACCAATGTTGTTGTAA
chr16	82862194	82862195	chr16:82862195:A:G	rs17673376	A	G	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr16	82964214	82964215	chr16:82964215:G:A	rs931937083	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr16	83001467	83001468	chr16:83001468:A:G	rs188559095	A	G	A	Sox3.mouse_HMG_1	13	1	-	1.0624423826571767	1.3234562080267958	GAGCAATGGCATTTTGA
chr16	83069627	83069628	chr16:83069628:C:T	rs7198852	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr16	83071215	83071216	chr16:83071216:A:G	rs28426984	A	G	A	Sox3.mouse_HMG_1	14	1	-	0.506654785438494	-5.603236129810213	CCACAATTGCTGTGTTG
chr16	83100569	83100570	chr16:83100570:A:G	rs72798333	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.0579026346031974	-4.6682308426992565	AAACAATGGTCCTGTAG
chr16	83116726	83116727	chr16:83116727:C:G	rs79886005	C	G	C	Sox3.mouse_HMG_1	3	1	+	2.220385868842471	-4.686649150815183	TAACAATCACTGTGTTA
chr16	83175683	83175684	chr16:83175684:G:A	rs78142105	G	A	G	Sox3.mouse_HMG_1	9	1	-	2.2384158897834854	2.2027097648989167	TAAGAATGACGGTGTTT
chr16	83344208	83344209	chr16:83344209:C:T	rs149767674	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr16	83420588	83420589	chr16:83420589:T:C	rs13337525	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.5899955782639899	-5.136137899038467	ATACAATGATAATGGTA
chr16	83441554	83441555	chr16:83441555:A:G	rs11646905	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr16	83494416	83494417	chr16:83494417:A:G	rs1387370	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr16	83498730	83498731	chr16:83498731:G:A	rs4378602	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr16	83513121	83513122	chr16:83513122:A:G	rs77607480	A	G	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr16	83727668	83727669	chr16:83727669:A:G	rs8062187	A	G	G	Sox3.mouse_HMG_1	4	1	+	1.9236663540783132	-4.888658737898922	AAAAAATAAAATTGCAT
chr16	83728435	83728436	chr16:83728436:C:G	rs72799117	C	G	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr16	83842565	83842566	chr16:83842566:T:C	rs366495	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr16	83888571	83888572	chr16:83888572:C:T	rs116626344	C	T	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr16	83910977	83910978	chr16:83910978:T:A	rs3826130	T	A	t	Sox3.mouse_HMG_1	4	1	-	0.3692757624004034	-5.945032664103426	AAAGAAAGAAATTGTGT
chr16	83910978	83910979	chr16:83910979:C:A	rs190609859	C	A	c	Sox3.mouse_HMG_1	3	1	-	0.3692757624004034	1.2935346639237353	AAAGAAAGAAATTGTGT
chr16	84096680	84096681	chr16:84096681:C:G	rs8049209	C	G	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr16	84172778	84172779	chr16:84172779:G:A	rs1035558	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr16	84302970	84302971	chr16:84302971:A:G	rs12599383	A	G	A	Sox3.mouse_HMG_1	10	1	+	12.888389751113552	5.980144592142214	TGACAATGACATTGTTG
chr16	84399109	84399110	chr16:84399110:G:T	chr16:84399110:G:T	G	T	.	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr16	84418597	84418598	chr16:84418598:C:G	rs941684968	C	G	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr16	84462968	84462969	chr16:84462969:G:A	rs749977357	G	A	G	Sox3.mouse_HMG_1	2	1	+	0.5906902006141241	4.998625179594585	AAGCAGTGTCAGTGTGG
chr16	84501748	84501749	chr16:84501749:A:G	rs4782983	A	G	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr16	84501759	84501760	chr16:84501760:A:G	rs72808609	A	G	A	Sox3.mouse_HMG_1	6	1	-	1.0445050177383688	-5.601585751890551	TAAGAATGGCAGTGCTG
chr16	84541934	84541935	chr16:84541935:T:C	rs451480	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr16	84544675	84544676	chr16:84544676:C:T	rs7205203	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr16	84544684	84544685	chr16:84544685:C:T	rs190451731	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr16	84544693	84544694	chr16:84544694:C:T	rs117659656	C	T	C	Sox3.mouse_HMG_1	13	1	-	2.748835572315117	-3.359270217710799	CTGCAATGACATGGTTT
chr16	84668490	84668491	chr16:84668491:C:G	rs11149673	C	G	C	Sox3.mouse_HMG_1	7	1	-	0.8425761923665425	-4.778115942558231	CCGCCATGATATTGTTG
chr16	84685170	84685171	chr16:84685171:T:C	rs117108132	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr16	84919422	84919423	chr16:84919423:G:C	rs74031069	G	C	G	Sox3.mouse_HMG_1	11	1	+	-0.07957810398363768	-4.00905554608311	AGACAATCCCAGTGCTG
chr16	84922205	84922206	chr16:84922206:A:G	rs9935409	A	G	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr16	85002096	85002097	chr16:85002097:T:C	rs9938580	T	C	T	Sox3.mouse_HMG_1	5	1	-	4.266593936380181	-2.4595395409222762	AAGCAATACTATTTTAT
chr16	85031881	85031882	chr16:85031882:G:C	rs71386886	G	C	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr16	85186081	85186082	chr16:85186082:C:G	rs7198356	C	G	C	Sox3.mouse_HMG_1	0	1	-	1.2695078001797728	1.052732953289113	GAACAGTATCAGTGGTG
chr16	85310421	85310422	chr16:85310422:T:A	chr16:85310422:T:A	T	A	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr16	85390556	85390557	chr16:85390557:G:C	rs11149741	G	C	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr16	85547277	85547278	chr16:85547278:G:C	rs13329722	G	C	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr16	85547311	85547312	chr16:85547312:G:A	rs7498141	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr16	85897897	85897898	chr16:85897898:G:A	rs170033	G	A	.	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr16	86067266	86067267	chr16:86067267:A:C	rs9937643	A	C	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr16	86068614	86068615	chr16:86068615:T:C	rs6540251	T	C	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr16	86243505	86243506	chr16:86243506:T:A	rs1704502	T	A	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr16	86290110	86290111	chr16:86290111:T:C	rs13335682	T	C	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr16	86305962	86305963	chr16:86305963:T:C	rs16940787	T	C	T	Sox3.mouse_HMG_1	4	1	-	0.904375677810003	-5.907949414167235	CAAAAAAAAAAGTGTTT
chr16	86306054	86306055	chr16:86306055:C:T	rs11649143	C	T	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr16	86392586	86392587	chr16:86392587:T:C	rs3108511	T	C	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr16	86427671	86427672	chr16:86427672:T:A	rs7189464	T	A	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr16	86538273	86538274	chr16:86538274:T:C	rs2113238	T	C	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr16	86578419	86578420	chr16:86578420:G:C	rs552979239	G	C	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr16	86586921	86586922	chr16:86586922:A:T	rs7192043	A	T	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr16	86636610	86636611	chr16:86636611:T:C	rs1562107	T	C	C	Sox3.mouse_HMG_1	4	1	-	4.537042055561769	-2.275283036415466	GGACACTGGCAGTGTTT
chr16	86651812	86651813	chr16:86651813:A:G	rs4843416	A	G	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr16	86665135	86665136	chr16:86665136:C:T	rs79925326	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr16	86665481	86665482	chr16:86665482:T:C	rs34076489	T	C	C	Sox3.mouse_HMG_1	1	1	-	6.746777455542798	2.4193441121401045	AAACATTGTCAGTGTTC
chr16	86673188	86673189	chr16:86673189:G:T	rs35285681	G	T	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr16	86752467	86752468	chr16:86752468:T:C	rs16942051	T	C	C	Sox3.mouse_HMG_1	15	1	+	1.0550568634226103	-3.2474449343728735	CACCAAAGCCAGTGTTG
chr16	86870528	86870529	chr16:86870529:A:G	rs13380717	A	G	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr16	86885319	86885320	chr16:86885320:T:C	rs7501319	T	C	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr16	86885335	86885336	chr16:86885336:C:G	rs73254789	C	G	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr16	86955741	86955742	chr16:86955742:G:A	rs11647668	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr16	87039393	87039394	chr16:87039394:G:C	rs2161645	G	C	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr16	87054569	87054570	chr16:87054570:G:A	rs895420	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr16	87245663	87245664	chr16:87245664:C:T	rs146344916	C	T	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr16	87318574	87318575	chr16:87318575:C:T	rs874441	C	T	T	Sox3.mouse_HMG_1	11	1	-	0.06503792149805954	-3.669439505547687	GTGCTATGGCAGTGTTT
chr16	87318577	87318578	chr16:87318578:C:T	rs874440	C	T	C	Sox3.mouse_HMG_1	8	1	-	0.06503792149805954	1.091451396508695	GTGCTATGGCAGTGTTT
chr16	87327786	87327787	chr16:87327787:G:A	rs2278270	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr16	87388112	87388113	chr16:87388113:G:A	rs139479773	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr16	87435824	87435825	chr16:87435825:A:C	rs139163256	A	C	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr16	87967401	87967402	chr16:87967402:T:C	rs12599962	T	C	t	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr16	88116504	88116505	chr16:88116505:G:A	rs9929165	G	A	-	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr16	88131283	88131284	chr16:88131284:G:A	rs116379750	G	A	-	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr16	88131317	88131318	chr16:88131318:T:C	rs8063133	T	C	-	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr16	88232562	88232563	chr16:88232563:A:G	rs7205683	A	G	-	Sox3.mouse_HMG_1	15	1	-	3.5622466889362414	-0.7402551088592417	AAACAAGGACAGCGTTA
chr16	89343311	89343312	chr16:89343312:G:C	rs3102381	G	C	G	Sox3.mouse_HMG_1	2	1	+	1.625552986803878	-0.3918469139369747	AAGCAATACCTGTGTTC
chr16	89459778	89459779	chr16:89459779:A:C	rs72803374	A	C	A	Sox3.mouse_HMG_1	7	1	+	2.341770923893867	-2.782850891253593	AAACAATAAAAAAGTAG
chr16	89563902	89563903	chr16:89563903:G:A	rs12709089	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr16	89724224	89724225	chr16:89724225:G:C	rs543355869	G	C	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr16	89791526	89791527	chr16:89791527:G:A	rs11646374	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr16	89791555	89791556	chr16:89791556:T:C	rs1800330	T	C	C	Sox3.mouse_HMG_1	11	1	+	0.8163217232336415	-5.241134385726712	GAACCATGACATAGTCA
chr16	89974761	89974762	chr16:89974762:C:G	rs62052247	C	G	C	Sox3.mouse_HMG_1	13	1	-	-0.2553086420119222	-6.363414432037838	GAACAAGGACAGAGTAG
chr17	148163	148164	chr17:148164:C:T	rs9286394	C	T	.	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr17	241102	241103	chr17:241103:T:C	rs9909439	T	C	c	Sox3.mouse_HMG_1	12	1	+	4.1366150771387815	-2.0698505080790706	TAATAATAATCTTGTTG
chr17	262493	262494	chr17:262494:G:A	rs8064378	G	A	g	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr17	262499	262500	chr17:262500:C:T	rs58654395	C	T	c	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr17	764402	764403	chr17:764403:C:G	rs114316719	C	G	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr17	896921	896922	chr17:896922:C:A	rs1023934857	C	A	C	Sox3.mouse_HMG_1	6	1	-	1.2911437045676233	8.199598738664033	AAAGAAGAATATTGTGT
chr17	911079	911080	chr17:911080:T:C	rs7209796	T	C	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr17	1264439	1264440	chr17:1264440:G:A	rs73975683	G	A	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr17	1367567	1367568	chr17:1367568:G:A	rs539900665	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr17	1408751	1408752	chr17:1408752:G:T	rs61248729	G	T	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr17	1793349	1793350	chr17:1793350:C:T	rs12600664	C	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr17	2030904	2030905	chr17:2030905:T:G	rs11078780	T	G	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr17	2049210	2049211	chr17:2049211:C:A	rs563400206	C	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr17	2164442	2164443	chr17:2164443:C:A	rs9892559	C	A	A	Sox3.mouse_HMG_1	14	1	+	1.7463638318113797	2.570777398364995	CAACAATGACAATGCAA
chr17	2199142	2199143	chr17:2199143:C:T	rs16952009	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr17	2199158	2199159	chr17:2199159:G:C	rs9908888	G	C	G	Sox3.mouse_HMG_1	9	1	-	2.0232491123398852	-4.013394894210546	AAGCAAGAACATTTTTT
chr17	2482448	2482449	chr17:2482449:A:G	rs73300215	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr17	2491070	2491071	chr17:2491071:G:C	rs763034953	G	C	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr17	2635645	2635646	chr17:2635646:A:C	rs34471859	A	C	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr17	2858925	2858926	chr17:2858926:C:A	rs72817399	C	A	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr17	2937636	2937637	chr17:2937637:C:T	rs1530378	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr17	2982431	2982432	chr17:2982432:C:T	rs112396368	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr17	2982453	2982454	chr17:2982454:T:C	rs111267603	T	C	T	Sox3.mouse_HMG_1	4	1	-	8.437244487145998	1.6249193951687642	GAACACTGAAAGTGTTT
chr17	2982470	2982471	chr17:2982471:G:A	chr17:2982471:G:A	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr17	2983475	2983476	chr17:2983476:A:T	rs76529650	A	T	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr17	3036238	3036239	chr17:3036239:T:C	rs8071148	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr17	3245045	3245046	chr17:3245046:C:T	rs78366623	C	T	.	Sox3.mouse_HMG_1	0	1	-	3.073570794777572	4.4463874602391105	GAACAATATCAGCCTTT
chr17	3276416	3276417	chr17:3276417:A:T	rs2955821	A	T	.	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr17	3415906	3415907	chr17:3415907:T:C	rs59822688	T	C	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr17	3480348	3480349	chr17:3480349:C:G	rs9899946	C	G	G	Sox3.mouse_HMG_1	13	1	-	2.3563712396320637	-3.751734550393852	TAAAAATTCCAGTGTCT
chr17	3501028	3501029	chr17:3501029:C:T	rs12946429	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr17	3745237	3745238	chr17:3745238:T:G	rs34715307	T	G	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr17	3998519	3998520	chr17:3998520:A:G	rs6502765	A	G	G	Sox3.mouse_HMG_1	0	1	+	0.6419914349768912	-0.7308252304846483	AAACAGTGGCATTATCA
chr17	4190375	4190376	chr17:4190376:G:T	rs146466629	G	T	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr17	4405781	4405782	chr17:4405782:C:T	rs35074337	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr17	4429748	4429749	chr17:4429749:A:T	rs58567065	A	T	A	Sox3.mouse_HMG_1	16	1	-	3.7493965770500832	2.3497134915718636	ATACAATGGAATAGTAT
chr17	4454477	4454478	chr17:4454478:A:G	rs12601416	A	G	A	Sox3.mouse_HMG_1	6	1	-	0.11434868778447366	-6.531742081844445	GGACAATAAAGTTGTGG
chr17	4515255	4515256	chr17:4515256:G:A	rs4790638	G	A	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr17	4521669	4521670	chr17:4521670:G:A	rs9916478	G	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr17	4648266	4648267	chr17:4648267:C:T	rs749302	C	T	C	Sox3.mouse_HMG_1	13	1	-	0.3525020915986014	-5.755603698427314	GGGCAATGGTAGAGTTG
chr17	4659153	4659154	chr17:4659154:C:T	rs72835630	C	T	C	Sox3.mouse_HMG_1	0	1	-	0.6661149168754091	2.0389315823369496	GGGAAATTCTATTGTTT
chr17	4722790	4722791	chr17:4722791:C:T	rs67966027	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr17	4858099	4858100	chr17:4858100:T:C	rs79248783	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr17	4858293	4858294	chr17:4858294:G:C	rs1265675097	G	C	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr17	4858295	4858296	chr17:4858296:G:C	rs148010056	G	C	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr17	5664161	5664162	chr17:5664162:C:A	rs7214605	C	A	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr17	5667197	5667198	chr17:5667198:A:G	rs2716932	A	G	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr17	5691268	5691269	chr17:5691269:T:C	rs75083083	T	C	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr17	5815160	5815161	chr17:5815161:G:A	rs4985637	G	A	G	Sox3.mouse_HMG_1	11	1	+	-0.6352556744629635	-4.369733101508712	GTGCATTGCCAGTGTTT
chr17	5824801	5824802	chr17:5824802:C:T	rs9907625	C	T	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr17	5830033	5830034	chr17:5830034:T:C	rs9912593	T	C	c	Sox3.mouse_HMG_1	10	1	-	5.157185943190598	-1.7510592157807416	CAACAAAGTCAGTGTTC
chr17	5842706	5842707	chr17:5842707:G:A	rs4506957	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr17	6025217	6025218	chr17:6025218:G:A	rs6502904	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr17	6142721	6142722	chr17:6142722:G:A	rs11870686	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr17	6219865	6219866	chr17:6219866:G:A	rs116116946	G	A	G	Sox3.mouse_HMG_1	1	1	+	8.437164238428622	12.764597581831312	AGACAAGAATATTGTTT
chr17	6386298	6386299	chr17:6386299:T:C	rs10852877	T	C	C	Sox3.mouse_HMG_1	9	1	+	-0.10497031008793051	-0.0692641852033618	GTACAATGGTAGAGTCG
chr17	6386304	6386305	chr17:6386305:C:T	rs142196739	C	T	C	Sox3.mouse_HMG_1	15	1	+	-0.10497031008793051	4.197531487707553	GTACAATGGTAGAGTCG
chr17	6413241	6413242	chr17:6413242:A:G	rs56161371	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr17	6645409	6645410	chr17:6645410:G:A	rs7214691	G	A	G	Sox3.mouse_HMG_1	16	1	+	4.207167474285642	3.7733360295645344	AAGCAATGACACTGTGG
chr17	6700204	6700205	chr17:6700205:T:C	rs8080021	T	C	T	Sox3.mouse_HMG_1	14	1	+	6.526704146249742	0.41681323100103473	AAACAATAACTTTTTTT
chr17	6763672	6763673	chr17:6763673:G:T	rs75358677	G	T	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr17	7314624	7314625	chr17:7314625:G:A	rs62059197	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr17	7548490	7548491	chr17:7548491:A:G	rs79722152	A	G	A	Sox3.mouse_HMG_1	5	1	+	0.9773772214792732	-5.748756255823186	GACCAATTTTGGTGTTT
chr17	7548511	7548512	chr17:7548512:G:A	chr17:7548512:G:A	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr17	7588227	7588228	chr17:7588228:T:C	rs78555071	T	C	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr17	7615486	7615487	chr17:7615487:C:T	rs77506065	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr17	7615507	7615508	chr17:7615508:A:G	rs777620506	A	G	A	Sox3.mouse_HMG_1	5	1	+	4.397895824472774	-2.328237652829683	ATACAATGAAAGTTTTG
chr17	7615522	7615523	chr17:7615523:G:A	rs531874178	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr17	7644709	7644710	chr17:7644710:C:T	rs2543554	C	T	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr17	7644733	7644734	chr17:7644734:T:C	rs1641530	T	C	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr17	7686731	7686732	chr17:7686732:T:G	chr17:7686732:T:G	T	G	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr17	8059323	8059324	chr17:8059324:C:G	rs73239913	C	G	C	Sox3.mouse_HMG_1	1	1	-	0.3788165146881265	-0.9316050381702928	AGACAATGATGGTGGTT
chr17	8420085	8420086	chr17:8420086:T:C	rs8069818	T	C	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr17	8747040	8747041	chr17:8747041:A:G	rs78342095	A	G	a	Sox3.mouse_HMG_1	16	1	-	4.071699829785671	0.4699031641646889	GAACTTTTACATTGTTT
chr17	9065288	9065289	chr17:9065289:C:T	rs9904139	C	T	c	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr17	9268773	9268774	chr17:9268774:A:G	rs187401247	A	G	A	Sox3.mouse_HMG_1	12	1	-	0.532541333063052	-5.673924252154799	CAGTAGTGACATTGTTG
chr17	9268777	9268778	chr17:9268778:T:C	rs7215786	T	C	C	Sox3.mouse_HMG_1	8	1	-	0.532541333063052	-0.49387214194758317	CAGTAGTGACATTGTTG
chr17	9456458	9456459	chr17:9456459:T:C	rs9911856	T	C	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr17	9906073	9906074	chr17:9906074:T:C	rs527686414	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr17	10112891	10112892	chr17:10112892:G:A	rs9904700	G	A	g	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr17	10230064	10230065	chr17:10230065:A:G	rs12949353	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr17	10368316	10368317	chr17:10368317:G:A	rs12936552	G	A	G	Sox3.mouse_HMG_1	15	1	-	-0.20105144741483755	4.101450350380646	GAACAATGTGGTTGTCG
chr17	10429918	10429919	chr17:10429919:C:T	rs7215212	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr17	10809064	10809065	chr17:10809065:T:G	rs7214355	T	G	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr17	11007329	11007330	chr17:11007330:A:T	rs77466943	A	T	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr17	11493059	11493060	chr17:11493060:C:T	rs2908977	C	T	C	Sox3.mouse_HMG_1	0	1	-	2.255854525336504	3.628671190798045	GATAAATGTTAGTGTTG
chr17	11539033	11539034	chr17:11539034:A:G	rs1984452	A	G	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr17	11767101	11767102	chr17:11767102:C:T	rs78622805	C	T	C	Sox3.mouse_HMG_1	3	1	+	0.48908015452301007	-5.4936959636113105	AGACAATGTCGGTGTGG
chr17	12069101	12069102	chr17:12069102:A:G	rs35494733	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr17	12087361	12087362	chr17:12087362:A:G	rs10432016	A	G	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr17	12108088	12108089	chr17:12108089:C:T	rs4792218	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr17	12492846	12492847	chr17:12492847:A:T	rs11654876	A	T	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr17	12909951	12909952	chr17:12909952:A:G	rs73296315	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr17	13140985	13140986	chr17:13140986:T:C	rs9909179	T	C	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr17	13140995	13140996	chr17:13140996:G:A	rs12941879	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr17	13888369	13888370	chr17:13888370:C:A	rs4792408	C	A	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr17	14452914	14452915	chr17:14452915:A:T	rs1558523	A	T	a	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr17	14700530	14700531	chr17:14700531:T:C	rs16950246	T	C	t	Sox3.mouse_HMG_1	10	1	-	1.9240402304650992	-4.98420492850624	GAAAAATACCAGTGGTT
chr17	14739708	14739709	chr17:14739709:T:G	rs62063007	T	G	T	Sox3.mouse_HMG_1	5	1	-	4.896384256185067	-1.9167605981070217	CAGAAATGCAATTGTTT
chr17	14755319	14755320	chr17:14755320:G:A	rs12938624	G	A	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr17	14776197	14776198	chr17:14776198:G:A	rs76176256	G	A	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr17	14986325	14986326	chr17:14986326:G:A	rs8080728	G	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr17	15028661	15028662	chr17:15028662:A:G	rs7216570	A	G	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr17	15108910	15108911	chr17:15108911:T:C	rs35758181	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr17	15289881	15289882	chr17:15289882:C:A	rs1380180	C	A	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr17	15377714	15377715	chr17:15377715:T:A	rs113035304	T	A	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr17	15389846	15389847	chr17:15389847:G:T	rs917518	G	T	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr17	15457853	15457854	chr17:15457854:G:A	rs116692178	G	A	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr17	15463397	15463398	chr17:15463398:C:T	rs1548678	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr17	15562222	15562223	chr17:15562223:T:C	rs77473174	T	C	t	Sox3.mouse_HMG_1	9	1	-	2.1447232222428734	-2.4382763974784587	AAACAAAAAAAGTCTTG
chr17	16028492	16028493	chr17:16028493:G:A	rs73981414	G	A	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr17	16267449	16267450	chr17:16267450:C:A	rs7210990	C	A	C	Sox3.mouse_HMG_1	7	1	-	2.001209359938888	0.4636602551967325	ATACAAAGATATTTTTT
chr17	16297506	16297507	chr17:16297507:T:C	rs139727368	T	C	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr17	16341069	16341070	chr17:16341070:T:C	rs714285	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr17	16419049	16419050	chr17:16419050:G:T	rs8079271	G	T	N	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr17	16653158	16653159	chr17:16653159:A:G	rs7221518	A	G	.	Sox3.mouse_HMG_1	14	1	-	5.718164361192432	-0.39172655405627516	TGACAATGGTATTATTG
chr17	16813470	16813471	chr17:16813471:A:G	rs550839919	A	G	.	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr17	16820734	16820735	chr17:16820735:C:T	rs2688020	C	T	.	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr17	16910156	16910157	chr17:16910157:G:T	rs4578698	G	T	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr17	16910164	16910165	chr17:16910165:C:G	rs117365429	C	G	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr17	16918616	16918617	chr17:16918617:A:G	rs542069432	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr17	16973682	16973683	chr17:16973683:C:G	rs7504093	C	G	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr17	16996807	16996808	chr17:16996808:C:T	rs11868128	C	T	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr17	17021542	17021543	chr17:17021543:A:G	rs1049449477	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr17	17021549	17021550	chr17:17021550:T:C	rs4985780	T	C	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr17	17021576	17021577	chr17:17021577:G:C	rs147172926	G	C	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr17	17061865	17061866	chr17:17061866:A:G	rs7207187	A	G	A	Sox3.mouse_HMG_1	12	1	-	-0.681198815764223	-6.887664400982075	AAACCAAAGCAGTGTTC
chr17	17081104	17081105	chr17:17081105:A:G	rs4264448	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr17	17095082	17095083	chr17:17095083:C:T	rs111931832	C	T	C	Sox3.mouse_HMG_1	14	1	-	1.077227814150805	2.2183997172377103	TAACAATTCAATAGGTG
chr17	17276166	17276167	chr17:17276167:G:A	rs4985761	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr17	17283434	17283435	chr17:17283435:T:C	rs76850247	T	C	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr17	17309464	17309465	chr17:17309465:G:A	rs9889738	G	A	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr17	17335662	17335663	chr17:17335663:T:C	rs7211968	T	C	t	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr17	17404657	17404658	chr17:17404658:G:A	rs8079827	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr17	17497495	17497496	chr17:17497496:G:A	rs112156600	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr17	17510135	17510136	chr17:17510136:C:T	rs67453318	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr17	18042185	18042186	chr17:18042186:G:C	rs2955381	G	C	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr17	18182731	18182732	chr17:18182732:A:G	chr17:18182732:A:G	A	G	a	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr17	18683063	18683064	chr17:18683064:C:A	rs62073688	C	A	.	Sox3.mouse_HMG_1	8	1	+	3.45220821787603	4.584768681255106	AAATAACTCAATTGTTT
chr17	18900344	18900345	chr17:18900345:A:G	rs6502677	A	G	a	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr17	18924477	18924478	chr17:18924478:C:G	rs11655553	C	G	-	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr17	18924479	18924480	chr17:18924480:C:A	rs8080032	C	A	-	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr17	19243131	19243132	chr17:19243132:A:G	rs28550346	A	G	a	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr17	19391068	19391069	chr17:19391069:A:G	rs60998345	A	G	G	Sox3.mouse_HMG_1	12	1	-	4.97334571886989	-1.2331198663479608	AAACAAAACCAGTGTGT
chr17	19470999	19471000	chr17:19471000:T:C	rs76576684	T	C	T	Sox3.mouse_HMG_1	16	1	+	-0.1377382399301358	-3.739534905551118	GAGCACTCACAGTGTTT
chr17	19873202	19873203	chr17:19873203:C:T	rs11651717	C	T	C	Sox3.mouse_HMG_1	16	1	-	1.956842539209452	1.5230110944883448	AAGCAATGTTAGAGTCG
chr17	19897080	19897081	chr17:19897081:C:T	rs281366	C	T	C	Sox3.mouse_HMG_1	15	1	-	0.907401041787591	1.976976277601155	AAACAATGAAGTTTTGT
chr17	19985940	19985941	chr17:19985941:G:A	rs36097967	G	A	g	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr17	20071290	20071291	chr17:20071291:A:G	rs17685923	A	G	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr17	20083547	20083548	chr17:20083548:T:A	rs4925079	T	A	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr17	20203881	20203882	chr17:20203882:T:C	rs2703804	T	C	C	Sox3.mouse_HMG_1	0	1	+	5.761828855230366	6.195391668194411	TAACAATGCTATTGAGA
chr17	20302997	20302998	chr17:20302998:G:A	rs62066879	G	A	.	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr17	21011321	21011322	chr17:21011322:G:A	rs2291035	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr17	21025377	21025378	chr17:21025378:G:A	rs12452171	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr17	21163406	21163407	chr17:21163407:G:A	rs77302689	G	A	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr17	21300164	21300165	chr17:21300165:G:C	rs35068119	G	C	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr17	21664270	21664271	chr17:21664271:G:C	rs1444404220	G	C	.	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr17	21763275	21763276	chr17:21763276:C:A	rs1262537612	C	A	.	Sox3.mouse_HMG_1	8	1	+	2.5610815879509623	3.6936420513300376	AAACCATTCTTTTGTTA
chr17	21781630	21781631	chr17:21781631:C:T	rs1385291602	C	T	.	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr17	21834467	21834468	chr17:21834468:T:C	rs1424931663	T	C	.	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr17	22154602	22154603	chr17:22154603:A:G	rs374668015	A	G	.	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr17	22489700	22489701	chr17:22489701:A:G	chr17:22489701:A:G	A	G	.	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr17	25045204	25045205	chr17:25045205:G:C	rs1217340458	G	C	.	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr17	26800067	26800068	chr17:26800068:G:T	chr17:26800068:G:T	G	T	N	Sox3.mouse_HMG_1	11	1	+	0.9123848254446588	3.0403634923055387	AATCAATGGAAGTGAAT
chr17	26987137	26987138	chr17:26987138:C:T	rs62055412	C	T	C	Sox3.mouse_HMG_1	3	1	+	5.029424419724285	-0.9533516984100363	ACACAATGTTAGAGTTG
chr17	27087555	27087556	chr17:27087556:G:A	rs11652947	G	A	g	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr17	27244372	27244373	chr17:27244373:C:T	rs56295812	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr17	27323592	27323593	chr17:27323593:C:T	rs371698412	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr17	27373882	27373883	chr17:27373883:A:G	rs1623030	A	G	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr17	27771754	27771755	chr17:27771755:G:A	rs7217335	G	A	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr17	27797544	27797545	chr17:27797545:G:A	rs144754956	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr17	27834644	27834645	chr17:27834645:A:C	rs2779272	A	C	a	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr17	27845349	27845350	chr17:27845350:G:A	rs72841278	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr17	27865262	27865263	chr17:27865263:G:A	rs12449768	G	A	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr17	27980403	27980404	chr17:27980404:T:C	rs12948818	T	C	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr17	28336708	28336709	chr17:28336709:T:C	rs141975441	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr17	28416774	28416775	chr17:28416775:T:C	rs16964261	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr17	29375033	29375034	chr17:29375034:G:C	rs12945717	G	C	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr17	29439133	29439134	chr17:29439134:G:A	rs4289056	G	A	g	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr17	29518613	29518614	chr17:29518614:A:G	rs12936194	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.3480593923888313	-5.378074084913625	CTACAATGGAAGTTTTA
chr17	29854519	29854520	chr17:29854520:T:C	rs75486571	T	C	T	Sox3.mouse_HMG_1	9	1	+	2.3375122744412318	2.373218399325798	GAACAATTATAGTAATA
chr17	29855666	29855667	chr17:29855667:T:C	rs10445384	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr17	30091746	30091747	chr17:30091747:C:A	rs11080116	C	A	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr17	30296962	30296963	chr17:30296963:C:G	rs8080300	C	G	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr17	30322998	30322999	chr17:30322999:C:A	rs3110453	C	A	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr17	30337982	30337983	chr17:30337983:G:T	rs73275778	G	T	G	Sox3.mouse_HMG_1	13	1	+	0.4895923925511882	-5.879527222844347	TAGCAATGATAGAGTGG
chr17	30476644	30476645	chr17:30476645:C:A	rs12451873	C	A	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr17	30701531	30701532	chr17:30701532:A:T	rs28870673	A	T	.	Sox3.mouse_HMG_1	1	1	+	0.9988539813083751	-3.8914849449658284	AAAATATTCCATTGTAT
chr17	30831428	30831429	chr17:30831429:A:G	chr17:30831429:A:G	A	G	.	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr17	31269362	31269363	chr17:31269363:C:T	rs73988045	C	T	C	Sox3.mouse_HMG_1	3	1	+	7.4401834594618785	1.457407341327559	ATACAAGGACATTGTTG
chr17	31274398	31274399	chr17:31274399:A:C	rs113359320	A	C	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr17	31406630	31406631	chr17:31406631:T:A	rs929286	T	A	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr17	31406631	31406632	chr17:31406632:T:C	rs929287	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr17	31593920	31593921	chr17:31593921:A:G	rs17181735	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr17	31642789	31642790	chr17:31642790:G:A	rs315451	G	A	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr17	32591195	32591196	chr17:32591196:C:T	rs55728128	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr17	32808008	32808009	chr17:32808009:T:C	rs2430986	T	C	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr17	32992745	32992746	chr17:32992746:A:G	rs28906	A	G	g	Sox3.mouse_HMG_1	0	1	+	2.102515865959943	0.7296992004984035	AAGCAAGGTCATTGTGA
chr17	32993947	32993948	chr17:32993948:T:C	rs11870189	T	C	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr17	32993961	32993962	chr17:32993962:C:T	rs11872083	C	T	T	Sox3.mouse_HMG_1	9	1	+	-0.9317933342733882	-0.9674994591579578	AAACAATGACGGGGTGG
chr17	33194930	33194931	chr17:33194931:C:A	rs16968138	C	A	C	Sox3.mouse_HMG_1	13	1	-	3.8161522245484067	-2.552967390847128	AAACATTAAACTTGTTG
chr17	33404754	33404755	chr17:33404755:C:T	rs11655499	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr17	33455010	33455011	chr17:33455011:A:G	rs9303663	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.6627405795496113	-3.063392897752844	AAACAATAGCAGCGATA
chr17	33887815	33887816	chr17:33887816:A:T	rs7207394	A	T	T	Sox3.mouse_HMG_1	11	1	-	1.5189999199890105	-4.343456173917617	AAACAATGTTCTTTTAA
chr17	33908343	33908344	chr17:33908344:G:T	rs317348	G	T	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr17	33921949	33921950	chr17:33921950:T:A	rs17783755	T	A	A	Sox3.mouse_HMG_1	0	1	+	8.309115980894513	10.332270306210754	TAACAATGGAATTGGTG
chr17	33954785	33954786	chr17:33954786:C:T	rs12604021	C	T	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr17	34169600	34169601	chr17:34169601:C:A	rs3744510	C	A	C	Sox3.mouse_HMG_1	13	1	-	9.311906105245553	2.9427864898500182	AAAGAATGCAATTGTTA
chr17	34301316	34301317	chr17:34301317:A:G	rs8073784	A	G	A	Sox3.mouse_HMG_1	11	1	-	3.571034724109981	-2.4864213848503716	AGACAATAACATTCTCA
chr17	34378974	34378975	chr17:34378975:T:G	rs2157960	T	G	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr17	34490259	34490260	chr17:34490260:C:G	rs9907511	C	G	C	Sox3.mouse_HMG_1	7	1	-	0.42447092640431483	-5.196221208520458	CAACAAGGCAAGGGTTT
chr17	34622678	34622679	chr17:34622679:C:T	rs2009472	C	T	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr17	34688388	34688389	chr17:34688389:A:G	rs6505425	A	G	G	Sox3.mouse_HMG_1	15	1	+	1.9928505586205372	0.9232753228069731	GATCAAGAATATTGTAT
chr17	34721041	34721042	chr17:34721042:T:C	rs4795989	T	C	T	Sox3.mouse_HMG_1	6	1	+	1.6531434360120374	-4.992947333616883	AAGCAATACCTTTGTCA
chr17	35080620	35080621	chr17:35080621:T:C	rs118074685	T	C	T	Sox3.mouse_HMG_1	5	1	-	4.655204106385991	-2.070929370916467	GATCAACACCATTGTTT
chr17	35244289	35244290	chr17:35244290:G:T	rs57708672	G	T	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr17	35424053	35424054	chr17:35424054:T:C	rs9892864	T	C	G	Sox3.mouse_HMG_1	5	1	-	-0.026790792401707786	-6.752924269704164	GCACAATGTCTTAGTTT
chr17	35548668	35548669	chr17:35548669:T:A	rs78364481	T	A	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr17	35558652	35558653	chr17:35558653:C:T	rs4516277	C	T	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr17	35587111	35587112	chr17:35587112:T:A	rs28384429	T	A	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr17	35895607	35895608	chr17:35895608:G:A	rs61590868	G	A	G	Sox3.mouse_HMG_1	3	1	-	2.1487538641592807	-3.834022253975042	ACTCAATAAAATTGTGT
chr17	35920504	35920505	chr17:35920505:A:G	rs4796133	A	G	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr17	36150097	36150098	chr17:36150098:G:A	rs916841	G	A	G	Sox3.mouse_HMG_1	8	1	+	-0.37181087658018097	0.6546025984304548	GAACATTAGCATCGTGT
chr17	36746563	36746564	chr17:36746564:C:G	rs9906898	C	G	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr17	36779344	36779345	chr17:36779345:T:C	rs12452614	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr17	37444734	37444735	chr17:37444735:G:A	chr17:37444735:G:A	G	A	G	Sox3.mouse_HMG_1	7	1	+	1.1544479382818054	0.6583776185044945	AGACATTGATTTTGTTG
chr17	37546815	37546816	chr17:37546816:T:C	rs3110621	T	C	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr17	37742137	37742138	chr17:37742138:C:T	rs140202989	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr17	38414564	38414565	chr17:38414565:A:G	rs8067707	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr17	38414602	38414603	chr17:38414603:A:T	rs116833935	A	T	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr17	38647583	38647584	chr17:38647584:A:C	rs6503730	A	C	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr17	38660076	38660077	chr17:38660077:A:G	rs4794787	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr17	38942752	38942753	chr17:38942753:T:C	rs199649284	T	C	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr17	39041243	39041244	chr17:39041244:T:G	rs8071973	T	G	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr17	39283242	39283243	chr17:39283243:T:C	rs602688	T	C	C	Sox3.mouse_HMG_1	15	1	+	0.07196248185222281	-4.23053931594326	GAGCAATGCTATTACTG
chr17	39417262	39417263	chr17:39417263:A:G	rs4795362	A	G	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr17	39526403	39526404	chr17:39526404:A:G	rs4404103	A	G	A	Sox3.mouse_HMG_1	12	1	-	-0.5128503060594023	-6.719315891277254	AACCAAGGCCATTGATG
chr17	40438503	40438504	chr17:40438504:T:G	rs11078945	T	G	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr17	40438553	40438554	chr17:40438554:C:T	rs35103116	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr17	40483598	40483599	chr17:40483599:C:T	rs184598291	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr17	40516584	40516585	chr17:40516585:A:G	rs73310952	A	G	G	Sox3.mouse_HMG_1	9	1	-	1.210410641782335	1.2461167666669037	AGAAAATATTAGTGTAG
chr17	40722574	40722575	chr17:40722575:G:A	rs2429553	G	A	g	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr17	40854609	40854610	chr17:40854610:A:C	rs9900340	A	C	C	Sox3.mouse_HMG_1	12	1	+	8.247517371560955	7.629243859976213	AAACAATGACATATTTT
chr17	40952693	40952694	chr17:40952694:C:T	rs193078887	C	T	C	Sox3.mouse_HMG_1	1	1	-	1.5374509599532138	5.8648843033559075	TGACAATGGCATAGTCA
chr17	40953261	40953262	chr17:40953262:C:T	rs770313139	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr17	40957353	40957354	chr17:40957354:A:G	rs7207813	A	G	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr17	41016899	41016900	chr17:41016900:C:T	rs35788358	C	T	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr17	41392909	41392910	chr17:41392910:A:G	rs9907506	A	G	G	Sox3.mouse_HMG_1	4	1	+	0.06427409574898013	-6.748050996228256	CACCAATGCCATTGGGT
chr17	41526901	41526902	chr17:41526902:A:G	rs112500068	A	G	A	Sox3.mouse_HMG_1	16	1	-	2.9728426122540945	-0.6289540533668876	CAACAAAAACAGTGCTT
chr17	41604960	41604961	chr17:41604961:T:A	rs6503641	T	A	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr17	41693831	41693832	chr17:41693832:A:G	rs77748677	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr17	42003448	42003449	chr17:42003449:G:A	rs8079958	G	A	G	Sox3.mouse_HMG_1	11	1	+	8.331739276872248	4.597261849826502	GAACAATTCCAGTGTCA
chr17	42248913	42248914	chr17:42248914:T:C	rs114408613	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr17	42248960	42248961	chr17:42248961:G:A	rs763777481	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr17	42273857	42273858	chr17:42273858:G:A	rs9907247	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr17	42294403	42294404	chr17:42294404:C:A	rs16967637	C	A	A	Sox3.mouse_HMG_1	8	1	-	1.972230501763512	2.178822738305614	GAACAGTTGTATGGTTG
chr17	42361898	42361899	chr17:42361899:G:A	rs72823023	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr17	42414731	42414732	chr17:42414732:C:G	rs2062213	C	G	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr17	42585098	42585099	chr17:42585099:G:A	rs4792992	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr17	43342774	43342775	chr17:43342775:G:T	rs11653303	G	T	G	Sox3.mouse_HMG_1	7	1	+	4.6484000349238315	3.110850930181678	GAACAATGATTTTTTTG
chr17	43482233	43482234	chr17:43482234:T:G	chr17:43482234:T:G	T	G	T	Sox3.mouse_HMG_1	14	1	+	2.296557203421911	-4.130092048360087	GAACAATGGCTGGGTTT
chr17	43578669	43578670	chr17:43578670:T:C	rs1316957	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr17	43661851	43661852	chr17:43661852:T:C	rs115821295	T	C	T	Sox3.mouse_HMG_1	4	1	-	0.46234509368718724	-6.34997999829005	GGACAGTGAAAATGTTT
chr17	43700786	43700787	chr17:43700787:A:G	rs146369160	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr17	43720323	43720324	chr17:43720324:A:C	rs1828720	A	C	C	Sox3.mouse_HMG_1	11	1	+	0.1900539807291341	-0.004946034324591564	CAGCAATGTCAATTTTG
chr17	43762687	43762688	chr17:43762688:C:T	rs1728174	C	T	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr17	44619941	44619942	chr17:44619942:A:G	rs36121689	A	G	a	Sox3.mouse_HMG_1	16	1	+	1.6948449889288943	2.1286764336500013	CAACAATTGTTTTATTA
chr17	44940258	44940259	chr17:44940259:G:C	rs68187323	G	C	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr17	45095762	45095763	chr17:45095763:C:G	rs9899380	C	G	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr17	45487933	45487934	chr17:45487934:A:G	rs1210372852	A	G	.	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr17	45614153	45614154	chr17:45614154:C:T	rs2463530	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr17	45715528	45715529	chr17:45715529:T:G	rs1568951	T	G	G	Sox3.mouse_HMG_1	1	1	-	1.6105893351566691	-4.02726556110444	AAACAATGGTGCTGTGT
chr17	45715529	45715530	chr17:45715530:T:C	rs1568950	T	C	C	Sox3.mouse_HMG_1	0	1	-	1.6105893351566691	0.23777266969513067	AAACAATGGTGCTGTGT
chr17	45837361	45837362	chr17:45837362:G:T	rs62054803	G	T	G	Sox3.mouse_HMG_1	7	1	+	0.6579368368018097	-0.8796122679403451	AGACAATGCCAGTGGGG
chr17	45981848	45981849	chr17:45981849:C:T	rs62063783	C	T	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr17	46072374	46072375	chr17:46072375:G:A	rs12150611	G	A	g	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr17	46122656	46122657	chr17:46122657:G:A	rs9910683	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr17	46175908	46175909	chr17:46175909:T:C	rs2532260	T	C	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr17	46208164	46208165	chr17:46208165:G:A	rs2469933	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr17	46214759	46214760	chr17:46214760:T:C	rs2668695	T	C	c	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr17	46274764	46274765	chr17:46274765:G:T	rs2668622	G	T	.	Sox3.mouse_HMG_1	3	1	-	8.579396328381529	1.8546828655178331	AAACAATGATACTGTGG
chr17	46286968	46286969	chr17:46286969:G:A	rs578102530	G	A	.	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr17	46998816	46998817	chr17:46998817:C:G	rs77212031	C	G	.	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr17	47070440	47070441	chr17:47070441:T:G	rs111958058	T	G	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr17	47270654	47270655	chr17:47270655:T:C	rs8074094	T	C	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr17	47327777	47327778	chr17:47327778:G:A	rs7221345	G	A	G	Sox3.mouse_HMG_1	8	1	-	1.972688740846204	2.285427965756748	AAACAATGCTACTGCAA
chr17	47863230	47863231	chr17:47863231:C:G	rs147691993	C	G	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr17	47959910	47959911	chr17:47959911:A:T	rs2525095	A	T	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr17	48207164	48207165	chr17:48207165:G:T	rs190591861	G	T	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr17	48510968	48510969	chr17:48510969:C:T	rs2036764	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr17	48566026	48566027	chr17:48566027:A:G	rs2740760	A	G	A	Sox3.mouse_HMG_1	12	1	-	4.639772769567408	-1.5666928156504438	ATATAATTGCAGTGTTT
chr17	48647812	48647813	chr17:48647813:A:C	rs11655078	A	C	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr17	48722112	48722113	chr17:48722113:A:G	rs78731865	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr17	48765212	48765213	chr17:48765213:A:T	rs72831853	A	T	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr17	48765213	48765214	chr17:48765214:T:C	rs4793984	T	C	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr17	49192778	49192779	chr17:49192779:G:T	rs1045421604	G	T	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr17	49602992	49602993	chr17:49602993:C:A	rs74749701	C	A	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr17	50019624	50019625	chr17:50019625:C:A	rs4794089	C	A	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr17	50054095	50054096	chr17:50054096:A:G	rs9890077	A	G	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr17	50218629	50218630	chr17:50218630:G:A	rs72826528	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr17	50269009	50269010	chr17:50269010:C:T	rs767480412	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr17	50378623	50378624	chr17:50378624:A:T	rs2189712	A	T	A	Sox3.mouse_HMG_1	4	1	+	0.2226916963046603	-6.091616730199168	CAACAGTACTGGTGTTG
chr17	50549786	50549787	chr17:50549787:G:C	rs7214956	G	C	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr17	50671371	50671372	chr17:50671372:A:C	rs79065649	A	C	A	Sox3.mouse_HMG_1	13	1	-	1.3381311077581675	7.707250723153702	GCACAATTTTAGTTTTG
chr17	50764038	50764039	chr17:50764039:C:T	rs12453046	C	T	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr17	50772382	50772383	chr17:50772383:C:T	rs917598	C	T	t	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr17	50931132	50931133	chr17:50931133:T:G	chr17:50931133:T:G	T	G	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr17	50931141	50931142	chr17:50931142:G:A	rs1425583382	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr17	50940779	50940780	chr17:50940780:T:C	rs9893647	T	C	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr17	50943333	50943334	chr17:50943334:C:G	rs2007935	C	G	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr17	51119742	51119743	chr17:51119743:C:T	rs77839552	C	T	C	Sox3.mouse_HMG_1	6	1	+	3.656604699094024	10.302695468722943	TACCAACGAAATTGTTT
chr17	51239162	51239163	chr17:51239163:T:C	rs9912818	T	C	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr17	51247113	51247114	chr17:51247114:G:A	rs59649592	G	A	A	Sox3.mouse_HMG_1	13	1	+	3.28497784190452	-2.823127948121396	AAATAAAAATATTGTAT
chr17	51461688	51461689	chr17:51461689:C:T	rs141975294	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr17	51641936	51641937	chr17:51641937:T:C	rs971968	T	C	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr17	51805599	51805600	chr17:51805600:A:G	rs73336608	A	G	a	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr17	52383709	52383710	chr17:52383710:C:G	rs147543943	C	G	C	Sox3.mouse_HMG_1	16	1	-	0.3921599270131179	-2.243785097850752	AGGCAATGGCATAGTAG
chr17	52383728	52383729	chr17:52383729:G:A	chr17:52383729:G:A	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr17	52470646	52470647	chr17:52470647:T:G	rs11650893	T	G	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr17	52516508	52516509	chr17:52516509:T:C	rs72841089	T	C	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr17	52694783	52694784	chr17:52694784:T:C	rs62070777	T	C	T	Sox3.mouse_HMG_1	7	1	-	1.0753762271058562	1.571446546883167	CAACCATATTAGTTTTG
chr17	52882799	52882800	chr17:52882800:T:C	rs56334548	T	C	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr17	52938738	52938739	chr17:52938739:G:A	rs56672152	G	A	g	Sox3.mouse_HMG_1	3	1	-	1.1421377356881917	-4.840638382446129	CAACAATATAAGCTTTT
chr17	53033161	53033162	chr17:53033162:T:G	rs12450200	T	G	T	Sox3.mouse_HMG_1	5	1	-	1.036811282942767	-5.776333571349319	GAACAACACCAGTGGTG
chr17	53092908	53092909	chr17:53092909:A:C	rs12450999	A	C	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr17	53464142	53464143	chr17:53464143:G:A	rs34705848	G	A	G	Sox3.mouse_HMG_1	3	1	-	3.4635621253725946	-2.5192139927617294	CAGCAGTTGAATTGTTT
chr17	53850692	53850693	chr17:53850693:T:C	rs9303342	T	C	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr17	54257619	54257620	chr17:54257620:T:C	rs17659536	T	C	T	Sox3.mouse_HMG_1	2	1	-	6.899576791509189	2.4916418125287274	AAACAGTACAATTGTAT
chr17	54273464	54273465	chr17:54273465:C:A	rs11871209	C	A	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr17	54372613	54372614	chr17:54372614:A:G	rs7212588	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.5077396041642532	-4.218393873138205	AAGCAATCTTTTTGTTT
chr17	54603930	54603931	chr17:54603931:G:A	rs9901206	G	A	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr17	55154479	55154480	chr17:55154480:G:A	rs244288	G	A	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr17	55499662	55499663	chr17:55499663:A:C	rs9899776	A	C	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr17	55635525	55635526	chr17:55635526:T:C	rs8077387	T	C	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr17	55921410	55921411	chr17:55921411:T:G	rs73320219	T	G	T	Sox3.mouse_HMG_1	9	1	+	4.474395220591113	-1.5265426610747506	GAACAAGGATAGTGATT
chr17	56347947	56347948	chr17:56347948:T:C	rs56256630	T	C	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr17	56515594	56515595	chr17:56515595:G:A	rs74593742	G	A	G	Sox3.mouse_HMG_1	6	1	+	5.019840625592438	5.019840625592438	CAACAAGGGTAGTGTAT
chr17	56654094	56654095	chr17:56654095:C:T	rs547902262	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr17	56716377	56716378	chr17:56716378:T:C	rs183851937	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr17	56740793	56740794	chr17:56740794:C:T	rs8068196	C	T	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr17	56754923	56754924	chr17:56754924:T:C	rs117639887	T	C	T	Sox3.mouse_HMG_1	10	1	-	7.751447051783644	0.8432018928123058	AAACAATAACATATTTT
chr17	56786570	56786571	chr17:56786571:C:A	rs60066901	C	A	C	Sox3.mouse_HMG_1	11	1	-	4.293406419701888	6.421385086562768	AGACAATTTCAGTGTAC
chr17	56982289	56982290	chr17:56982290:G:A	rs3095497	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr17	57286245	57286246	chr17:57286246:C:A	rs3803757	C	A	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr17	57291693	57291694	chr17:57291694:A:G	chr17:57291694:A:G	A	G	A	Sox3.mouse_HMG_1	6	1	-	2.3109350251665344	-4.335155744462382	AAACAATTCAAGTGCGG
chr17	57407551	57407552	chr17:57407552:C:A	rs62060395	C	A	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr17	57417984	57417985	chr17:57417985:C:G	rs2028626	C	G	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr17	57658593	57658594	chr17:57658594:T:A	rs76637018	T	A	T	Sox3.mouse_HMG_1	12	1	+	2.0615041935332536	-3.526687880099858	AATCAATAATTTTGTAA
chr17	57772838	57772839	chr17:57772839:A:G	rs203266	A	G	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr17	57813117	57813118	chr17:57813118:A:C	rs75280583	A	C	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr17	57834149	57834150	chr17:57834150:A:C	rs1443268	A	C	C	Sox3.mouse_HMG_1	14	1	-	-0.012010190802320575	-6.438659442584318	GAACCAGACAAGTGTTT
chr17	57857932	57857933	chr17:57857933:T:C	rs9893914	T	C	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr17	58053455	58053456	chr17:58053456:A:G	rs751721155	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr17	58267081	58267082	chr17:58267082:T:C	rs8178406	T	C	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr17	58411806	58411807	chr17:58411807:C:T	rs2021733	C	T	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr17	58659277	58659278	chr17:58659278:C:T	rs555094497	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr17	58659278	58659279	chr17:58659279:A:T	rs34275691	A	T	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr17	58659286	58659287	chr17:58659287:T:C	rs940852710	T	C	t	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr17	58659297	58659298	chr17:58659298:A:G	rs368186	A	G	a	Sox3.mouse_HMG_1	12	1	-	1.0570262264565857	-5.149439358761265	AAATAATGTCTTTGTGG
chr17	58659300	58659301	chr17:58659301:G:A	rs77158394	G	A	A	Sox3.mouse_HMG_1	9	1	-	1.0570262264565857	1.021320101572017	AAATAATGTCTTTGTGG
chr17	58786769	58786770	chr17:58786770:T:C	rs144173593	T	C	T	Sox3.mouse_HMG_1	0	1	-	3.356751934015421	1.9839352685538845	AAACAATAATATGGAAG
chr17	58862565	58862566	chr17:58862566:G:A	rs12150264	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr17	59329657	59329658	chr17:59329658:A:G	rs1451506	A	G	G	Sox3.mouse_HMG_1	0	1	-	5.795843242231437	6.229406055195482	TAACAAAAAAAGTGTTA
chr17	59395794	59395795	chr17:59395795:G:A	rs12952070	G	A	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr17	59756584	59756585	chr17:59756585:A:G	rs2333562	A	G	A	Sox3.mouse_HMG_1	10	1	+	2.652544265952656	-4.255700893018683	AAACAACTCCAGTCTTT
chr17	59777058	59777059	chr17:59777059:G:A	rs6503941	G	A	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr17	60249686	60249687	chr17:60249687:A:G	rs78812326	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr17	60393041	60393042	chr17:60393042:T:G	rs112135325	T	G	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr17	60393051	60393052	chr17:60393052:G:A	rs192678203	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr17	60396607	60396608	chr17:60396608:T:G	rs56968846	T	G	N	Sox3.mouse_HMG_1	9	1	+	6.444899122660872	0.4439612409950095	AGACAAGAGTATTGTTG
chr17	60858275	60858276	chr17:60858276:C:T	rs116981531	C	T	C	Sox3.mouse_HMG_1	7	1	-	1.0022394543867907	0.5061691346094798	CAGAAATGTTAGTGTAT
chr17	61153967	61153968	chr17:61153968:G:A	rs8067176	G	A	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr17	61198593	61198594	chr17:61198594:A:C	rs16944991	A	C	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr17	61203672	61203673	chr17:61203673:C:T	rs6504023	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr17	61519986	61519987	chr17:61519987:T:C	rs9897291	T	C	t	Sox3.mouse_HMG_1	2	1	-	3.7493965770500832	-0.6585384019303785	ATACAATGGAATAGTAT
chr17	62485064	62485065	chr17:62485065:G:A	rs1415536001	G	A	G	Sox3.mouse_HMG_1	3	1	-	1.697028772115551	-4.28574734601877	ACACAGTGATATTCTTT
chr17	62514933	62514934	chr17:62514934:A:G	rs34974529	A	G	N	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr17	62760167	62760168	chr17:62760168:T:A	rs183688677	T	A	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr17	62760201	62760202	chr17:62760202:G:A	rs12940621	G	A	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr17	62790603	62790604	chr17:62790604:G:C	rs75223779	G	C	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr17	62790613	62790614	chr17:62790614:C:T	rs115650869	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr17	62804735	62804736	chr17:62804736:A:G	rs8067624	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr17	62816717	62816718	chr17:62816718:G:C	rs4591205	G	C	G	Sox3.mouse_HMG_1	7	1	+	0.33458420102878894	-5.286107933895984	AAGCGATGTCAGTGTCA
chr17	62843135	62843136	chr17:62843136:C:T	rs12943559	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr17	63115911	63115912	chr17:63115912:A:C	rs74993683	A	C	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr17	63115917	63115918	chr17:63115918:T:C	rs36098761	T	C	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr17	63274208	63274209	chr17:63274209:A:G	chr17:63274209:A:G	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr17	63395963	63395964	chr17:63395964:C:A	rs2270133	C	A	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr17	63463319	63463320	chr17:63463320:T:G	rs10468560	T	G	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr17	63474188	63474189	chr17:63474189:G:A	rs7213516	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr17	63474243	63474244	chr17:63474244:T:G	rs7214530	T	G	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr17	63621362	63621363	chr17:63621363:A:G	rs11871767	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr17	63689096	63689097	chr17:63689097:T:G	rs16947042	T	G	c	Sox3.mouse_HMG_1	2	1	-	1.1585853819096852	-5.266749497811629	AAACAAGGTCAGAGTTC
chr17	64093425	64093426	chr17:64093426:A:G	rs147289479	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr17	64179327	64179328	chr17:64179328:C:G	rs9915286	C	G	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr17	64179338	64179339	chr17:64179339:T:C	rs9889475	T	C	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr17	64250638	64250639	chr17:64250639:G:A	rs11655800	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr17	64265202	64265203	chr17:64265203:T:C	rs756277	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr17	64282239	64282240	chr17:64282240:T:C	chr17:64282240:T:C	T	C	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr17	64333674	64333675	chr17:64333675:T:C	rs4130374	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr17	64404355	64404356	chr17:64404356:T:C	rs6504227	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr17	64456061	64456062	chr17:64456062:A:T	rs28561911	A	T	a	Sox3.mouse_HMG_1	15	1	-	3.2300149124535746	-0.26682870933889613	AAACAATTTTTTTTTTA
chr17	64613365	64613366	chr17:64613366:G:A	rs6504243	G	A	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr17	64682835	64682836	chr17:64682836:G:A	rs144050049	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr17	64815245	64815246	chr17:64815246:A:C	rs2074181	A	C	C	Sox3.mouse_HMG_1	10	1	+	1.6502420802032292	-4.914413374378032	CAACAATACCATAGAAG
chr17	64927597	64927598	chr17:64927598:G:A	rs145044783	G	A	.	Sox3.mouse_HMG_1	1	1	+	0.4019794471899323	4.729412790592626	CGACAACTACATTGTCA
chr17	65079364	65079365	chr17:65079365:T:C	rs1530350	T	C	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr17	65124327	65124328	chr17:65124328:C:T	rs1968574	C	T	T	Sox3.mouse_HMG_1	11	1	-	3.6732083666819566	-0.06126906036378876	GAACAATAACAGTAGTT
chr17	65125510	65125511	chr17:65125511:A:G	rs1010271	A	G	A	Sox3.mouse_HMG_1	12	1	+	1.1863576083526228	0.20642161131811165	CAACAAAGATATAGTAA
chr17	65730615	65730616	chr17:65730616:T:C	rs1034763	T	C	t	Sox3.mouse_HMG_1	12	1	+	2.77965610824052	-3.426809476977331	AAACAATGCCATTTGAT
chr17	65885446	65885447	chr17:65885447:T:C	rs191412599	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr17	66021212	66021213	chr17:66021213:A:G	rs973861	A	G	a	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr17	66270067	66270068	chr17:66270068:C:A	rs11658488	C	A	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr17	66305244	66305245	chr17:66305245:C:T	rs17633401	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr17	66354110	66354111	chr17:66354111:C:T	rs75319200	C	T	C	Sox3.mouse_HMG_1	11	1	-	0.14770019278102098	-3.5867772342647264	AAACAATGTTCGCGTCT
chr17	66417265	66417266	chr17:66417266:A:T	rs2319523	A	T	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr17	66446417	66446418	chr17:66446418:T:C	rs172939	T	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr17	66483225	66483226	chr17:66483226:G:A	rs72838301	G	A	g	Sox3.mouse_HMG_1	7	1	+	5.410696379664667	4.914626059887356	AAACAACGAAAGTGTGT
chr17	66518424	66518425	chr17:66518425:T:A	rs1877848	T	A	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr17	66527874	66527875	chr17:66527875:G:A	rs2048716	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr17	66633717	66633718	chr17:66633718:C:T	rs150697457	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr17	66633812	66633813	chr17:66633813:T:C	rs139853781	T	C	T	Sox3.mouse_HMG_1	5	1	-	0.4664232816168473	-6.259710195685609	AACCAATGATGTTTTTT
chr17	66711342	66711343	chr17:66711343:A:G	rs16960091	A	G	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr17	66717318	66717319	chr17:66717319:A:G	rs9890708	A	G	a	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr17	66783311	66783312	chr17:66783312:G:T	rs3889237	G	T	T	Sox3.mouse_HMG_1	0	1	+	2.8685195594292265	2.218181899574521	GTACAATTTAAATGTTA
chr17	66791454	66791455	chr17:66791455:T:C	rs4791040	T	C	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr17	67039098	67039099	chr17:67039099:T:C	rs4790993	T	C	T	Sox3.mouse_HMG_1	14	1	+	5.692775591877645	-0.41711532337106205	CATCAATCACATTGTTA
chr17	67039118	67039119	chr17:67039119:C:T	rs2885928	C	T	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr17	67079750	67079751	chr17:67079751:A:G	rs4790988	A	G	A	Sox3.mouse_HMG_1	2	1	+	5.118290617490182	0.7103556385097223	AAATAATTATCTTGTTG
chr17	67194438	67194439	chr17:67194439:C:T	rs117126492	C	T	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr17	67391282	67391283	chr17:67391283:A:G	rs56690908	A	G	A	Sox3.mouse_HMG_1	9	1	-	1.6363395552547704	1.672045680139339	AAACAACATTATTATAG
chr17	67391283	67391284	chr17:67391284:A:G	rs8070284	A	G	A	Sox3.mouse_HMG_1	8	1	-	1.6363395552547704	1.323600330344228	AAACAACATTATTATAG
chr17	67391288	67391289	chr17:67391289:G:T	rs8070689	G	T	G	Sox3.mouse_HMG_1	3	1	-	1.6363395552547704	-5.088373907608929	AAACAACATTATTATAG
chr17	67469168	67469169	chr17:67469169:G:A	rs72845145	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr17	67533062	67533063	chr17:67533063:C:T	rs35966843	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr17	67542385	67542386	chr17:67542386:G:C	rs2706691	G	C	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr17	67645534	67645535	chr17:67645535:C:T	rs2706710	C	T	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr17	67650745	67650746	chr17:67650746:T:G	rs55987730	T	G	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr17	67689878	67689879	chr17:67689879:C:A	rs79697047	C	A	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr17	67746937	67746938	chr17:67746938:A:G	rs8068183	A	G	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr17	67751917	67751918	chr17:67751918:G:C	rs76756823	G	C	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr17	67992920	67992921	chr17:67992921:A:G	rs190313223	A	G	A	Sox3.mouse_HMG_1	11	1	-	1.277266210443856	-4.780189898516495	AAACAATGACATGAATG
chr17	67992931	67992932	chr17:67992932:T:C	rs28368756	T	C	C	Sox3.mouse_HMG_1	0	1	-	1.277266210443856	-0.09555045501768183	AAACAATGACATGAATG
chr17	68066543	68066544	chr17:68066544:T:C	rs62084741	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr17	68102923	68102924	chr17:68102924:A:G	rs760781252	A	G	A	Sox3.mouse_HMG_1	6	1	-	-0.0898722058679764	-6.7359629754968955	CAAAAATGGCACTGTAA
chr17	68173905	68173906	chr17:68173906:A:C	rs4558468	A	C	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr17	68201743	68201744	chr17:68201744:G:A	rs4968986	G	A	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr17	68201782	68201783	chr17:68201783:T:C	rs4968829	T	C	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr17	68563955	68563956	chr17:68563956:G:A	rs34212119	G	A	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr17	68673958	68673959	chr17:68673959:A:T	rs7220817	A	T	T	Sox3.mouse_HMG_1	6	1	+	-0.7093140925151625	6.199140941581248	GCACAAAGCCAATGTTT
chr17	68794032	68794033	chr17:68794033:G:A	rs76042435	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr17	68910075	68910076	chr17:68910076:G:A	rs6501853	G	A	.	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr17	69423911	69423912	chr17:69423912:A:G	rs117326832	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr17	69443311	69443312	chr17:69443312:G:C	rs12453226	G	C	g	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr17	69569310	69569311	chr17:69569311:G:A	rs77975410	G	A	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr17	69569319	69569320	chr17:69569320:G:C	rs535049904	G	C	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr17	69569349	69569350	chr17:69569350:T:C	rs144490476	T	C	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr17	69573971	69573972	chr17:69573972:A:G	rs1966327	A	G	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr17	69581103	69581104	chr17:69581104:C:T	rs8182335	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr17	69762153	69762154	chr17:69762154:C:T	rs1473120	C	T	T	Sox3.mouse_HMG_1	13	1	-	2.718965928208139	-3.3891398618177773	GAAGAATTTTTTTGTTT
chr17	69877003	69877004	chr17:69877004:A:C	rs12103827	A	C	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr17	70044888	70044889	chr17:70044889:G:A	rs11871263	G	A	G	Sox3.mouse_HMG_1	7	1	-	3.2968515090009127	7.379994539183528	AAACAATCATATTGAGA
chr17	70074391	70074392	chr17:70074392:C:T	rs11656778	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr17	70074392	70074393	chr17:70074393:A:G	rs1990197	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr17	70076144	70076145	chr17:70076145:G:C	rs8080091	G	C	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr17	70114112	70114113	chr17:70114113:A:C	rs6501377	A	C	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr17	70198120	70198121	chr17:70198121:C:T	rs236578	C	T	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr17	70274507	70274508	chr17:70274508:G:A	rs9894659	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr17	70279582	70279583	chr17:70279583:C:T	rs8074548	C	T	C	Sox3.mouse_HMG_1	8	1	+	4.531642375099375	4.8443816000099185	AAACAGTGCTTTTGTTG
chr17	70309950	70309951	chr17:70309951:C:T	rs2573032	C	T	C	Sox3.mouse_HMG_1	15	1	-	0.8663763788515789	1.935951614665143	CAACAATCAAATTCTGT
chr17	70468776	70468777	chr17:70468777:A:G	rs717119	A	G	a	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr17	70492566	70492567	chr17:70492567:A:G	rs59310654	A	G	A	Sox3.mouse_HMG_1	12	1	-	1.783995074777609	-4.422470510440243	ATACAATCATGTTGTTG
chr17	71071095	71071096	chr17:71071096:C:G	rs115481969	C	G	C	Sox3.mouse_HMG_1	13	1	-	2.0755040683457175	-4.032601721680199	AAGCAAAGACTTTGTTT
chr17	71267246	71267247	chr17:71267247:G:C	rs6501465	G	C	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr17	71439688	71439689	chr17:71439689:G:A	rs188768304	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr17	71440966	71440967	chr17:71440967:T:G	chr17:71440967:T:G	T	G	T	Sox3.mouse_HMG_1	2	1	-	1.8653184980785862	-4.560016381642728	AAACGATTTAAGAGTTT
chr17	71440986	71440987	chr17:71440987:G:A	rs62064804	G	A	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr17	71467959	71467960	chr17:71467960:A:T	rs62064834	A	T	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr17	71475631	71475632	chr17:71475632:T:A	rs12940634	T	A	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr17	71494237	71494238	chr17:71494238:A:G	rs74571009	A	G	A	Sox3.mouse_HMG_1	9	1	-	0.20516102929408275	0.24086715417865234	CAACAATGCTTATGTGT
chr17	71602075	71602076	chr17:71602076:C:A	rs9900249	C	A	C	Sox3.mouse_HMG_1	15	1	+	0.6569951267244961	1.4626533027275084	GAACAGTAGTATAGTCT
chr17	71657375	71657376	chr17:71657376:C:T	rs113121672	C	T	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr17	71827096	71827097	chr17:71827097:T:C	rs4141267	T	C	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr17	71871216	71871217	chr17:71871217:G:A	rs141504790	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr17	72053679	72053680	chr17:72053680:G:A	rs564767727	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr17	72053688	72053689	chr17:72053689:C:T	rs79649062	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr17	72343014	72343015	chr17:72343015:G:C	rs77113365	G	C	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr17	72345221	72345222	chr17:72345222:A:C	rs542425817	A	C	A	Sox3.mouse_HMG_1	9	1	-	3.1029399467967713	-2.897997934869092	CAGCAATAATATTGCAG
chr17	72420816	72420817	chr17:72420817:G:A	rs8080655	G	A	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr17	72466746	72466747	chr17:72466747:G:A	rs1035077	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr17	72527900	72527901	chr17:72527901:G:A	rs78025287	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr17	72617015	72617016	chr17:72617016:T:C	rs9889692	T	C	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr17	72650674	72650675	chr17:72650675:C:T	rs4793469	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr17	72652118	72652119	chr17:72652119:C:T	rs71377866	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr17	72710155	72710156	chr17:72710156:T:C	rs16977337	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr17	72804005	72804006	chr17:72804006:T:G	rs2713982	T	G	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr17	72838679	72838680	chr17:72838680:C:A	rs4793491	C	A	C	Sox3.mouse_HMG_1	15	1	-	2.1913079862789293	6.7577268438849645	AAGCAACTTTATTGTGT
chr17	72968917	72968918	chr17:72968918:G:A	rs57807740	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr17	73429653	73429654	chr17:73429654:T:C	rs11650519	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr17	73679419	73679420	chr17:73679420:G:A	rs323388	G	A	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr17	73687172	73687173	chr17:73687173:G:A	rs170453	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr17	73831006	73831007	chr17:73831007:T:C	rs9898354	T	C	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr17	74012514	74012515	chr17:74012515:C:T	rs60225488	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr17	74087041	74087042	chr17:74087042:C:T	rs6501692	C	T	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr17	74120972	74120973	chr17:74120973:A:G	rs72844076	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr17	74121014	74121015	chr17:74121015:A:G	rs8065965	A	G	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr17	74253089	74253090	chr17:74253090:C:A	rs9899862	C	A	C	Sox3.mouse_HMG_1	16	1	-	1.2241687260446692	2.1900203668017815	CATCAATGTCATCGTAG
chr17	74468343	74468344	chr17:74468344:T:G	rs6501715	T	G	T	Sox3.mouse_HMG_1	5	1	-	4.702093156455753	-2.111051697836333	AAAAAATAAAAATGTTG
chr17	74478294	74478295	chr17:74478295:C:T	rs2891607	C	T	T	Sox3.mouse_HMG_1	11	1	-	0.43894761400699805	-3.295529813038749	CAGCAATGACAGTCTGG
chr17	74636524	74636525	chr17:74636525:G:A	rs12600673	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr17	74677646	74677647	chr17:74677647:C:A	rs12948633	C	A	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr17	74714656	74714657	chr17:74714657:T:C	rs12942311	T	C	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr17	74745723	74745724	chr17:74745724:G:A	rs149201208	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr17	74987390	74987391	chr17:74987391:C:T	rs569112965	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr17	75340863	75340864	chr17:75340864:T:G	rs55681135	T	G	T	Sox3.mouse_HMG_1	0	1	+	7.409290610865018	8.059628270719722	TAACAATTTTAGTGATG
chr17	75408086	75408087	chr17:75408087:A:G	rs930296	A	G	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr17	75460906	75460907	chr17:75460907:T:C	rs6501806	T	C	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr17	76049059	76049060	chr17:76049060:A:C	rs189640364	A	C	A	Sox3.mouse_HMG_1	10	1	-	4.133915023318115	4.03860484351379	CAACAATAACTTCGTTG
chr17	76106161	76106162	chr17:76106162:T:C	rs113316725	T	C	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr17	76222398	76222399	chr17:76222399:T:A	rs34435056	T	A	T	Sox3.mouse_HMG_1	8	1	-	3.209034918488887	2.389213680020354	GAACATTCACAGTGTTG
chr17	76609189	76609190	chr17:76609190:C:T	rs2532433	C	T	c	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr17	76630233	76630234	chr17:76630234:C:T	rs114077445	C	T	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr17	76641655	76641656	chr17:76641656:C:G	rs16969144	C	G	G	Sox3.mouse_HMG_1	0	1	+	3.356936665013412	3.573711511904072	CAACAATTCAATGGTGT
chr17	76641658	76641659	chr17:76641659:C:T	rs115790662	C	T	C	Sox3.mouse_HMG_1	3	1	+	3.356936665013412	-2.625839453120908	CAACAATTCAATGGTGT
chr17	76666873	76666874	chr17:76666874:C:A	rs62085110	C	A	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr17	76789301	76789302	chr17:76789302:C:G	rs113662270	C	G	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr17	77026728	77026729	chr17:77026729:A:G	rs2411069	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr17	77089571	77089572	chr17:77089572:A:G	rs16969661	A	G	A	Sox3.mouse_HMG_1	16	1	+	7.5896607050024425	8.02349214972355	AAACAATGTTACTGTCA
chr17	77148675	77148676	chr17:77148676:G:A	rs77176411	G	A	G	Sox3.mouse_HMG_1	3	1	-	1.5727777583828313	-4.40999835975149	CAACGATGGCAGTGCTG
chr17	77341498	77341499	chr17:77341499:G:A	rs577719258	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr17	77351341	77351342	chr17:77351342:C:T	rs141314377	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr17	77453333	77453334	chr17:77453334:A:G	chr17:77453334:A:G	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr17	77459488	77459489	chr17:77459489:C:T	rs72887162	C	T	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr17	77530988	77530989	chr17:77530989:G:T	rs58203824	G	T	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr17	77543749	77543750	chr17:77543750:T:C	rs11077913	T	C	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr17	77544075	77544076	chr17:77544076:C:T	rs73997920	C	T	C	Sox3.mouse_HMG_1	8	1	-	2.0666293141649748	3.09304278917561	GAACAAAAGCAGCGTTT
chr17	77567840	77567841	chr17:77567841:C:T	rs8077620	C	T	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr17	77588546	77588547	chr17:77588547:A:G	rs8076693	A	G	G	Sox3.mouse_HMG_1	12	1	-	3.2614015462807386	-2.9450640389371125	AAATAATAATAATGTGT
chr17	77672833	77672834	chr17:77672834:A:G	rs11869059	A	G	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr17	77784632	77784633	chr17:77784633:T:C	chr17:77784633:T:C	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr17	77863291	77863292	chr17:77863292:G:A	rs74000949	G	A	-	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr17	77863295	77863296	chr17:77863296:C:T	rs377173466	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr17	77944635	77944636	chr17:77944636:G:A	rs12051860	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr17	77944641	77944642	chr17:77944642:C:A	rs12051871	C	A	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr17	78035143	78035144	chr17:78035144:C:T	rs9907255	C	T	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr17	78274495	78274496	chr17:78274496:T:C	rs60259284	T	C	c	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr17	78395571	78395572	chr17:78395572:C:T	rs4969141	C	T	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr17	78718899	78718900	chr17:78718900:T:C	rs11652196	T	C	T	Sox3.mouse_HMG_1	16	1	-	4.420453252647626	4.854284697368733	CAATGATGACATTGTTA
chr17	78718921	78718922	chr17:78718922:T:C	rs28635237	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr17	79202538	79202539	chr17:79202539:A:G	rs35866811	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr17	79202580	79202581	chr17:79202581:C:T	rs35630276	C	T	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr17	79293999	79294000	chr17:79294000:A:G	rs9894139	A	G	A	Sox3.mouse_HMG_1	10	1	+	5.906200210180546	-1.0020449487907919	AAGCAATGACATAGTCT
chr17	79354149	79354150	chr17:79354150:T:C	rs1542396	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr17	79358577	79358578	chr17:79358578:A:G	rs35405259	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr17	79456728	79456729	chr17:79456729:C:T	rs869442	C	T	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr17	79547476	79547477	chr17:79547477:A:G	rs59853500	A	G	A	Sox3.mouse_HMG_1	9	1	+	4.323351570169317	-0.2596480495520153	AAACAAAAAAACTGTTG
chr17	79648447	79648448	chr17:79648448:G:C	rs926397720	G	C	g	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr17	79648486	79648487	chr17:79648487:T:C	rs901321548	T	C	c	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr17	79734236	79734237	chr17:79734237:C:G	rs72855480	C	G	g	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr17	79775777	79775778	chr17:79775778:G:A	rs564314871	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr17	79904816	79904817	chr17:79904817:T:A	rs732573	T	A	A	Sox3.mouse_HMG_1	10	1	-	1.0941049025644525	-5.718830076602561	GGACCATGACATTGATA
chr17	79958789	79958790	chr17:79958790:A:G	rs78988223	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr17	80034707	80034708	chr17:80034708:A:G	rs34520486	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.3396870059822596	-4.3864464713201965	CACCAATTTTACTGTTA
chr17	80037406	80037407	chr17:80037407:A:T	rs12600795	A	T	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr17	80059538	80059539	chr17:80059539:G:A	rs7225563	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr17	80059557	80059558	chr17:80059558:A:G	rs112872991	A	G	A	Sox3.mouse_HMG_1	4	1	+	4.279860499041548	-2.5324645929356864	AAACAATTAACTTTTTT
chr17	80123122	80123123	chr17:80123123:C:G	rs112984162	C	G	c	Sox3.mouse_HMG_1	3	1	+	0.7007743569883174	-6.206260662669335	AAACCATGTCATTGGGG
chr17	80533512	80533513	chr17:80533513:G:A	rs4890035	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr17	80544607	80544608	chr17:80544608:G:A	rs4890040	G	A	a	Sox3.mouse_HMG_1	9	1	-	1.4719202907280524	1.4362141658434837	AAACATTGTCATTATAA
chr17	80646262	80646263	chr17:80646263:A:G	rs62068358	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr17	80747370	80747371	chr17:80747371:G:A	rs7213696	G	A	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr17	80792262	80792263	chr17:80792263:G:A	rs75099973	G	A	G	Sox3.mouse_HMG_1	3	1	-	2.460183839340436	-3.5225922787938844	AAACAATTATCTTGCAT
chr17	80792275	80792276	chr17:80792276:T:A	rs28378121	T	A	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr17	80899658	80899659	chr17:80899659:C:T	rs9895537	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr17	80899663	80899664	chr17:80899664:A:G	rs4969297	A	G	G	Sox3.mouse_HMG_1	2	1	+	3.0092830653422133	-1.398651913638247	CAACACTGCCAGTGTGG
chr17	80899672	80899673	chr17:80899673:G:T	rs4969298	G	T	G	Sox3.mouse_HMG_1	11	1	+	3.0092830653422133	5.137261732203093	CAACACTGCCAGTGTGG
chr17	81001358	81001359	chr17:81001359:C:G	rs544601317	C	G	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr17	81027499	81027500	chr17:81027500:G:A	rs8072124	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr17	81031092	81031093	chr17:81031093:G:A	rs11548824	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr17	81253413	81253414	chr17:81253414:A:T	rs774586628	A	T	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr17	81254326	81254327	chr17:81254327:C:A	rs57776502	C	A	C	Sox3.mouse_HMG_1	9	1	+	0.590405385424833	-0.8632390014042672	AGACAGTTACACTGTTG
chr17	81402851	81402852	chr17:81402852:G:C	rs180828985	G	C	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr17	81510010	81510011	chr17:81510011:G:A	rs147350493	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr17	81511518	81511519	chr17:81511519:G:A	rs11549222	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr17	81924919	81924920	chr17:81924920:A:C	rs186426854	A	C	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr17	82238481	82238482	chr17:82238482:T:G	rs117195347	T	G	T	Sox3.mouse_HMG_1	4	1	-	0.4021208037520971	-6.323192911235509	TAGCAATGGCTTTGTGG
chr17	82457979	82457980	chr17:82457980:A:C	chr17:82457980:A:C	A	C	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr17	82461615	82461616	chr17:82461616:A:C	rs7211620	A	C	A	Sox3.mouse_HMG_1	16	1	-	1.108854215964247	0.14300257520713439	GTAAAATGACATTCTTT
chr17	82555506	82555507	chr17:82555507:T:C	rs11651563	T	C	T	Sox3.mouse_HMG_1	14	1	+	1.726319399492791	-4.383571515755916	AAACAGTTTTAATGTAT
chr17	82647257	82647258	chr17:82647258:T:C	rs12603129	T	C	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr17	82707700	82707701	chr17:82707701:T:C	rs12603178	T	C	C	Sox3.mouse_HMG_1	12	1	+	8.036501096955426	1.8300355117375737	GAATAATATCATTGTAT
chr17	82943752	82943753	chr17:82943753:C:T	rs79794802	C	T	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr17	83054872	83054873	chr17:83054873:A:G	rs11077961	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr17	83054894	83054895	chr17:83054895:T:C	rs34384479	T	C	T	Sox3.mouse_HMG_1	7	1	-	1.1432676859710016	1.6393380057483125	AAACAGTAGAAATGTAT
chr17	83183545	83183546	chr17:83183546:T:C	rs374788948	T	C	t	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr18	275817	275818	chr18:275818:G:C	rs112543581	G	C	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr18	597269	597270	chr18:597270:C:T	rs72865420	C	T	C	Sox3.mouse_HMG_1	11	1	+	1.131744123071242	7.189200232031595	GAACAAAGCCACTGTTC
chr18	597272	597273	chr18:597273:T:G	rs115123927	T	G	T	Sox3.mouse_HMG_1	14	1	+	1.131744123071242	-5.294905128710756	GAACAAAGCCACTGTTC
chr18	706588	706589	chr18:706589:A:G	rs2612102	A	G	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr18	715559	715560	chr18:715560:T:G	rs6506467	T	G	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr18	1223916	1223917	chr18:1223917:G:T	rs7232483	G	T	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr18	1487730	1487731	chr18:1487731:T:G	rs2345033	T	G	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr18	2444655	2444656	chr18:2444656:G:A	rs9946882	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr18	2542546	2542547	chr18:2542547:A:C	rs114519313	A	C	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr18	2570988	2570989	chr18:2570989:C:A	chr18:2570989:C:A	C	A	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr18	2571021	2571022	chr18:2571022:T:G	rs980571304	T	G	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr18	2654848	2654849	chr18:2654849:G:A	rs111495043	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr18	2850882	2850883	chr18:2850883:C:A	rs117088495	C	A	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr18	2850894	2850895	chr18:2850895:G:A	rs116204850	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr18	3029460	3029461	chr18:3029461:T:C	rs55768281	T	C	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr18	3029487	3029488	chr18:3029488:G:C	rs57492768	G	C	G	Sox3.mouse_HMG_1	15	1	+	4.113641066481218	4.3775581262917695	AAACAAGAGCAGTGTGG
chr18	3029492	3029493	chr18:3029493:C:T	rs73939733	C	T	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr18	3029493	3029494	chr18:3029494:G:A	rs1042499227	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr18	3055840	3055841	chr18:3055841:G:A	rs7228504	G	A	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr18	3076429	3076430	chr18:3076430:G:C	rs4500827	G	C	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr18	3150036	3150037	chr18:3150037:G:A	rs8091907	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr18	3161685	3161686	chr18:3161686:G:C	rs369997728	G	C	G	Sox3.mouse_HMG_1	13	1	+	2.377940268842159	-3.730165521183757	AAACAAATCTTTTGTTA
chr18	3252131	3252132	chr18:3252132:T:C	rs16944555	T	C	T	Sox3.mouse_HMG_1	6	1	+	1.225653109156966	-5.420437660471954	GACCAATGGCATAGTGT
chr18	3468802	3468803	chr18:3468803:A:G	rs8083002	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr18	3617610	3617611	chr18:3617611:T:C	rs1675249	T	C	C	Sox3.mouse_HMG_1	14	1	+	3.65609421626597	-2.4537966989827376	AAAAAAAAAAATTGTTG
chr18	3664988	3664989	chr18:3664989:A:T	rs1110731	A	T	T	Sox3.mouse_HMG_1	11	1	-	4.304024586216268	-1.5584315076903588	AGACAATAGCATAGTAG
chr18	3747513	3747514	chr18:3747514:C:G	rs8095503	C	G	c	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr18	3917497	3917498	chr18:3917498:C:G	rs9963999	C	G	g	Sox3.mouse_HMG_1	13	1	-	3.5938849498014824	-2.5142208402244335	ATACAGTAATATTGTAG
chr18	4106711	4106712	chr18:4106712:A:G	rs59201120	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr18	4403920	4403921	chr18:4403921:T:C	rs2320213	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr18	4583285	4583286	chr18:4583286:C:A	rs6506224	C	A	C	Sox3.mouse_HMG_1	13	1	-	6.61971054217879	0.25059092678325556	AAATAATTCTATTGTAA
chr18	4933179	4933180	chr18:4933180:A:G	rs35809330	A	G	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr18	5237162	5237163	chr18:5237163:C:G	rs9956056	C	G	C	Sox3.mouse_HMG_1	11	1	-	3.5545292876462233	-0.3749481544532494	CAGCAATGTAAGTGATG
chr18	5298759	5298760	chr18:5298760:C:A	rs629258	C	A	A	Sox3.mouse_HMG_1	8	1	-	0.7357556581912919	0.9423478947333948	TAACCATGGTCGTGTTG
chr18	5464102	5464103	chr18:5464103:T:A	rs11663092	T	A	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr18	5466110	5466111	chr18:5466111:C:T	rs74991875	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr18	5507603	5507604	chr18:5507604:A:T	rs60979927	A	T	T	Sox3.mouse_HMG_1	8	1	-	3.9294429348318314	4.749264173300364	CAACAATGTTAAGGTTA
chr18	5512414	5512415	chr18:5512415:G:A	rs111896047	G	A	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr18	5519228	5519229	chr18:5519229:A:G	rs1719949	A	G	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr18	5600721	5600722	chr18:5600722:T:C	rs116847054	T	C	T	Sox3.mouse_HMG_1	2	1	-	3.0826511412123216	-1.3252838377681393	GAACATTGGTTTTGTTG
chr18	5926216	5926217	chr18:5926217:C:T	rs724676	C	T	T	Sox3.mouse_HMG_1	6	1	+	2.596011993557756	9.242102763186674	CACCAACGTCAGTGTTT
chr18	5947874	5947875	chr18:5947875:G:A	rs1893192	G	A	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr18	5982071	5982072	chr18:5982072:T:C	rs12968675	T	C	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr18	5983703	5983704	chr18:5983704:T:C	rs189949247	T	C	T	Sox3.mouse_HMG_1	6	1	+	5.161253033004771	-1.4848377366241492	ACACAATGGCAGTGATG
chr18	5983730	5983731	chr18:5983731:A:G	rs572933	A	G	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr18	6281817	6281818	chr18:6281818:A:G	rs2084880	A	G	.	Sox3.mouse_HMG_1	5	1	+	2.0922443892505798	-4.633889088051876	AAACCATGGTAATGTAG
chr18	6482978	6482979	chr18:6482979:T:G	rs190965303	T	G	.	Sox3.mouse_HMG_1	4	1	-	2.9052230624316335	-3.8200906525559732	GAGCAATCATAATGTTT
chr18	6559076	6559077	chr18:6559077:T:G	rs8084667	T	G	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr18	6668640	6668641	chr18:6668641:T:G	rs1893286	T	G	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr18	6740785	6740786	chr18:6740786:T:C	rs8084747	T	C	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr18	6752265	6752266	chr18:6752266:A:G	rs7240722	A	G	G	Sox3.mouse_HMG_1	1	1	+	3.8185138635410976	-0.5089194798615945	GACCAATGGAATTCTTT
chr18	6774097	6774098	chr18:6774098:T:C	rs12958531	T	C	C	Sox3.mouse_HMG_1	6	1	+	2.974942662001222	-3.6711481076276975	AAGCAATTTTAATGTGT
chr18	6781695	6781696	chr18:6781696:C:T	rs12605379	C	T	C	Sox3.mouse_HMG_1	13	1	-	1.4873848915494867	-4.62072089847643	GAACAATGCCACAGTGT
chr18	6884488	6884489	chr18:6884489:A:G	rs656747	A	G	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr18	7113139	7113140	chr18:7113140:T:G	rs16951262	T	G	T	Sox3.mouse_HMG_1	4	1	-	1.821302376851059	-4.904011338136552	GCTCAATGCTATTGTCT
chr18	7823286	7823287	chr18:7823287:A:G	rs941719027	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr18	7897361	7897362	chr18:7897362:A:G	rs116567343	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr18	7922172	7922173	chr18:7922173:A:G	rs7237870	A	G	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr18	7925754	7925755	chr18:7925755:A:G	rs28755923	A	G	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr18	7950961	7950962	chr18:7950962:T:A	rs75032016	T	A	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr18	8080358	8080359	chr18:8080359:A:C	rs502843	A	C	A	Sox3.mouse_HMG_1	6	1	-	1.65733534395054	-5.251119690145871	AAACAATCCATGTGTTA
chr18	8084619	8084620	chr18:8084620:C:T	rs72909813	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr18	8540640	8540641	chr18:8540641:G:C	rs10502374	G	C	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr18	8716091	8716092	chr18:8716092:A:C	rs2160913	A	C	A	Sox3.mouse_HMG_1	2	1	+	5.821750418591204	-0.6035844611301084	CAACATTTTCAGTGTTA
chr18	9129859	9129860	chr18:9129860:G:A	rs11660603	G	A	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr18	9148079	9148080	chr18:9148080:C:T	rs144995182	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr18	9403020	9403021	chr18:9403021:C:T	rs8084269	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr18	9562043	9562044	chr18:9562044:C:T	rs2306134	C	T	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr18	9637382	9637383	chr18:9637383:G:A	rs16955345	G	A	A	Sox3.mouse_HMG_1	5	1	-	1.5177703280105956	1.42246014820627	GAGCACTGATACTGTTT
chr18	9705460	9705461	chr18:9705461:G:A	rs75422806	G	A	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr18	9743328	9743329	chr18:9743329:A:G	rs17431841	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr18	9753826	9753827	chr18:9753827:A:G	rs113757416	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr18	9870933	9870934	chr18:9870934:C:G	rs73940076	C	G	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr18	9988653	9988654	chr18:9988654:T:C	rs29049	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr18	10222032	10222033	chr18:10222033:C:T	rs58617043	C	T	c	Sox3.mouse_HMG_1	8	1	-	0.5895063878060091	1.6159198628166451	CACCATTTGCAGTGTTT
chr18	10335872	10335873	chr18:10335873:G:A	rs206604	G	A	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr18	10366055	10366056	chr18:10366056:C:A	rs373833942	C	A	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr18	10477606	10477607	chr18:10477607:T:C	rs666064	T	C	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr18	10715852	10715853	chr18:10715853:A:G	rs28712767	A	G	G	Sox3.mouse_HMG_1	14	1	-	2.3050842517360626	-3.804806663512645	AATCAATGGTATTTTGT
chr18	10813346	10813347	chr18:10813347:G:T	rs9945781	G	T	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr18	10914548	10914549	chr18:10914549:C:A	rs9948005	C	A	c	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr18	11154165	11154166	chr18:11154166:G:T	rs8091743	G	T	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr18	11176380	11176381	chr18:11176381:C:T	rs9951358	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr18	11253823	11253824	chr18:11253824:C:A	rs4797514	C	A	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr18	11388997	11388998	chr18:11388998:C:T	rs73943283	C	T	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr18	11483973	11483974	chr18:11483974:T:G	rs495434	T	G	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr18	11483979	11483980	chr18:11483980:A:C	rs572045	A	C	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr18	11518330	11518331	chr18:11518331:A:G	rs9953784	A	G	.	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr18	11695551	11695552	chr18:11695552:A:G	rs17515325	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr18	11788594	11788595	chr18:11788595:G:C	rs1477482	G	C	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr18	11839871	11839872	chr18:11839872:A:G	rs4371220	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr18	11946739	11946740	chr18:11946740:G:A	rs622863	G	A	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr18	12417905	12417906	chr18:12417906:A:G	rs503307	A	G	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr18	12637854	12637855	chr18:12637855:T:C	rs9958666	T	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr18	12637859	12637860	chr18:12637860:G:C	rs12454439	G	C	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr18	12819616	12819617	chr18:12819617:C:T	rs7227207	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr18	13029575	13029576	chr18:13029576:A:G	rs16940054	A	G	A	Sox3.mouse_HMG_1	9	1	-	3.9799999882474153	4.0157061131319844	GAAAAATTATATAGTTG
chr18	13336841	13336842	chr18:13336842:C:A	rs2276392	C	A	A	Sox3.mouse_HMG_1	3	1	+	2.646075103023946	-4.0786383598397515	AAACAATGACAAAATTT
chr18	13363623	13363624	chr18:13363624:A:G	rs367939430	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr18	13496304	13496305	chr18:13496305:G:A	rs55938405	G	A	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr18	13587951	13587952	chr18:13587952:A:G	rs1284400	A	G	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr18	13619409	13619410	chr18:13619410:G:A	rs79642611	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr18	13957551	13957552	chr18:13957552:T:C	rs9951717	T	C	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr18	21598764	21598765	chr18:21598765:G:A	rs2850567	G	A	A	Sox3.mouse_HMG_1	1	1	+	2.397600233370316	6.725033576773009	AGACAATAGCATATTTT
chr18	21827439	21827440	chr18:21827440:G:A	rs2155975	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr18	21943616	21943617	chr18:21943617:A:T	rs9948997	A	T	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr18	22106659	22106660	chr18:22106660:G:A	rs76265129	G	A	G	Sox3.mouse_HMG_1	9	1	-	1.9489811788064582	1.9132750539218903	AGGCAATGACAGTGGTG
chr18	22386094	22386095	chr18:22386095:T:G	rs73399060	T	G	T	Sox3.mouse_HMG_1	11	1	+	3.2312231041389086	1.103244437278029	AAACATTTAAATTATTG
chr18	22709808	22709809	chr18:22709809:C:T	rs299247	C	T	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr18	23016098	23016099	chr18:23016099:A:G	rs8091913	A	G	a	Sox3.mouse_HMG_1	6	1	-	2.319097375627348	-4.326993394001573	AAACCATGTCTGTGTTA
chr18	23154903	23154904	chr18:23154904:C:T	rs45450594	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr18	23203758	23203759	chr18:23203759:A:G	rs11875837	A	G	A	Sox3.mouse_HMG_1	11	1	-	5.825977800592625	-0.2314783083677283	AAGCAATGACATTTTTC
chr18	23258071	23258072	chr18:23258072:A:G	rs78479391	A	G	A	Sox3.mouse_HMG_1	6	1	-	5.8634460165391795	-0.7826447530897384	AAACAATGTCAGTCATT
chr18	23835622	23835623	chr18:23835623:T:A	rs4800515	T	A	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr18	23970664	23970665	chr18:23970665:A:G	rs73400386	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr18	24015519	24015520	chr18:24015520:G:C	rs543134167	G	C	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr18	24015526	24015527	chr18:24015527:C:T	rs143553354	C	T	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr18	24039948	24039949	chr18:24039949:A:G	rs117023085	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr18	24432751	24432752	chr18:24432752:T:G	rs3826641	T	G	T	Sox3.mouse_HMG_1	16	1	-	5.690289790811825	3.4881762106690624	GAACAATTCTGGTGTTA
chr18	24437058	24437059	chr18:24437059:A:G	rs7240651	A	G	A	Sox3.mouse_HMG_1	11	1	-	2.0105211649169816	-4.046934944043373	AGAAAACAACATTGTTT
chr18	24508319	24508320	chr18:24508320:C:T	rs17203433	C	T	C	Sox3.mouse_HMG_1	12	1	+	1.315647483655288	7.522113068873139	GAACAAAGTAAGCGTTT
chr18	24538307	24538308	chr18:24538308:C:T	rs769675541	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr18	24685712	24685713	chr18:24685713:G:T	rs339899	G	T	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr18	24763807	24763808	chr18:24763808:C:T	rs7233467	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr18	24880820	24880821	chr18:24880821:A:G	rs12964517	A	G	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr18	26127849	26127850	chr18:26127850:T:C	rs77024946	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr18	26403769	26403770	chr18:26403770:A:T	rs9946189	A	T	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr18	26435042	26435043	chr18:26435043:A:G	rs16942310	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr18	26614811	26614812	chr18:26614812:T:C	rs2438416	T	C	C	Sox3.mouse_HMG_1	9	1	-	2.563347486546245	-2.0196521331750863	GAACAAGATAAGTGTAG
chr18	26621813	26621814	chr18:26621814:T:C	rs76557369	T	C	T	Sox3.mouse_HMG_1	0	1	-	2.405745673858888	1.0329290083973484	AAACAAAAAATGTGTTT
chr18	26757611	26757612	chr18:26757612:C:T	rs7230487	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr18	27195384	27195385	chr18:27195385:A:G	rs11083200	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr18	27578303	27578304	chr18:27578304:G:A	rs1030096	G	A	A	Sox3.mouse_HMG_1	2	1	+	3.1687170442504593	7.5766520232309205	GGGCAATGTCATTCTTT
chr18	27656470	27656471	chr18:27656471:T:G	rs16943911	T	G	T	Sox3.mouse_HMG_1	2	1	-	4.943514710237752	-1.4818201694835624	GAACAATAACACTTTTG
chr18	27657699	27657700	chr18:27657700:C:T	rs16943917	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr18	27705436	27705437	chr18:27705437:T:C	rs75674632	T	C	t	Sox3.mouse_HMG_1	16	1	+	1.619752540569165	-1.982044125051817	AAACAGGGAAATTGTAT
chr18	27723613	27723614	chr18:27723614:A:G	rs115416020	A	G	A	Sox3.mouse_HMG_1	10	1	+	2.8449230733373687	-4.06332208563397	AAACAAATTCAGTGTGA
chr18	28078581	28078582	chr18:28078582:G:A	rs1808940	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr18	28284783	28284784	chr18:28284784:A:C	rs12608255	A	C	C	Sox3.mouse_HMG_1	16	1	-	2.412140504360262	1.4462888636031497	AGACAGTGAAATTGATT
chr18	28387879	28387880	chr18:28387880:G:T	rs7237578	G	T	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr18	28594451	28594452	chr18:28594452:A:G	rs4800885	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr18	28769422	28769423	chr18:28769423:G:C	rs242513	G	C	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr18	30095701	30095702	chr18:30095702:G:A	rs4455042	G	A	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr18	30489987	30489988	chr18:30489988:C:A	rs73413777	C	A	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr18	30814060	30814061	chr18:30814061:A:C	rs2000803	A	C	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr18	31169752	31169753	chr18:31169753:T:G	rs4344831	T	G	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr18	31203635	31203636	chr18:31203636:A:G	rs113574308	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr18	31203724	31203725	chr18:31203725:C:T	rs4447498	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr18	31233603	31233604	chr18:31233604:C:T	rs6506901	C	T	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr18	31233624	31233625	chr18:31233625:T:G	rs7244015	T	G	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr18	31386320	31386321	chr18:31386321:T:A	rs1460596	T	A	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr18	31706837	31706838	chr18:31706838:T:C	rs1941930	T	C	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr18	32249943	32249944	chr18:32249944:A:G	rs10502586	A	G	g	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr18	32297857	32297858	chr18:32297858:A:G	rs77631284	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr18	32319352	32319353	chr18:32319353:G:C	rs614014	G	C	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr18	32372140	32372141	chr18:32372141:A:G	rs1458860	A	G	A	Sox3.mouse_HMG_1	8	1	-	2.3390176430260667	2.0262784181155244	CCAAAATGTCAGTGTTG
chr18	32429795	32429796	chr18:32429796:A:G	rs10468904	A	G	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr18	32542614	32542615	chr18:32542615:G:A	rs16963529	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr18	32542631	32542632	chr18:32542632:C:T	rs78211929	C	T	C	Sox3.mouse_HMG_1	10	1	+	5.809680805817155	5.561401281231404	GCACAATGTCCTTGTTT
chr18	33135704	33135705	chr18:33135705:A:T	rs271583	A	T	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr18	33706515	33706516	chr18:33706516:G:A	rs12455788	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr18	34187720	34187721	chr18:34187721:T:C	rs12456222	T	C	T	Sox3.mouse_HMG_1	2	1	-	2.466439641329164	-1.9414953376512978	AGACAATGAAATATTTT
chr18	34356931	34356932	chr18:34356932:A:G	rs7233775	A	G	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr18	34624668	34624669	chr18:34624669:C:T	rs9973194	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr18	34767869	34767870	chr18:34767870:A:G	rs73946175	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr18	34773519	34773520	chr18:34773520:A:T	rs575055746	A	T	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr18	34913788	34913789	chr18:34913789:C:T	rs8083966	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr18	35077023	35077024	chr18:35077024:C:T	rs514400	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr18	36067996	36067997	chr18:36067997:G:A	rs6507160	G	A	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr18	36196163	36196164	chr18:36196164:G:A	rs13381368	G	A	G	Sox3.mouse_HMG_1	8	1	+	7.695479057863263	8.721892532873897	GAGCAATGGCATTGTCA
chr18	36196167	36196168	chr18:36196168:T:G	rs13381980	T	G	T	Sox3.mouse_HMG_1	12	1	+	7.695479057863263	1.1273509871956409	GAGCAATGGCATTGTCA
chr18	36613435	36613436	chr18:36613436:T:G	rs74943271	T	G	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr18	36712317	36712318	chr18:36712318:G:A	rs76212203	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr18	36712355	36712356	chr18:36712356:A:G	rs4603639	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr18	37935213	37935214	chr18:37935214:A:C	rs80337214	A	C	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr18	37998140	37998141	chr18:37998141:C:G	rs62081861	C	G	C	Sox3.mouse_HMG_1	1	1	-	7.270570612414398	5.960149059555978	AGATAATAACAGTGTTT
chr18	38039418	38039419	chr18:38039419:G:A	rs10502683	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr18	38263128	38263129	chr18:38263129:A:G	rs9944631	A	G	A	Sox3.mouse_HMG_1	10	1	+	5.0721150214464	-1.8361301375249384	AAAAAATTCTATTGTCA
chr18	38517688	38517689	chr18:38517689:C:T	rs1426677	C	T	C	Sox3.mouse_HMG_1	13	1	-	1.1573925836792585	-4.9507132063466575	GAAAAATGGCATTGGAT
chr18	39223995	39223996	chr18:39223996:C:T	rs549266046	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr18	39873018	39873019	chr18:39873019:T:G	rs12606009	T	G	T	Sox3.mouse_HMG_1	10	1	-	8.496249113577337	1.9315936589960745	AAACAACAACATTGTGT
chr18	39970141	39970142	chr18:39970142:T:C	rs12607095	T	C	C	Sox3.mouse_HMG_1	4	1	-	3.581914215552511	-3.230410876424725	AAACAGTGACAGTTTTA
chr18	40075970	40075971	chr18:40075971:A:G	rs16972696	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr18	40166574	40166575	chr18:40166575:T:A	rs72899173	T	A	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr18	40484792	40484793	chr18:40484793:C:T	rs1554945	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr18	41170455	41170456	chr18:41170456:G:A	rs111374437	G	A	g	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr18	41406934	41406935	chr18:41406935:T:C	rs6507415	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.5971353837242064	-5.12899809357825	CATCAATGTCAGTGTGC
chr18	41579174	41579175	chr18:41579175:C:G	rs72905915	C	G	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr18	41875584	41875585	chr18:41875585:A:G	rs1030619	A	G	G	Sox3.mouse_HMG_1	6	1	-	2.9370048330818173	-3.709085936547102	AAACCATATCAGTGTAC
chr18	42047966	42047967	chr18:42047967:G:A	rs12966303	G	A	G	Sox3.mouse_HMG_1	9	1	-	2.6029639557029047	2.567257830818337	TTACAATGGCAGGGTTG
chr18	42275575	42275576	chr18:42275576:A:T	rs72901320	A	T	A	Sox3.mouse_HMG_1	2	1	+	1.2256429390519994	-4.676443796904764	TCACAAGATCAGTGTTG
chr18	42339631	42339632	chr18:42339632:G:A	rs1841620	G	A	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr18	42636585	42636586	chr18:42636586:C:T	rs78647199	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr18	43527182	43527183	chr18:43527183:T:C	rs16977566	T	C	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr18	43579131	43579132	chr18:43579132:G:A	rs115980811	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr18	43758973	43758974	chr18:43758974:G:C	rs990049	G	C	G	Sox3.mouse_HMG_1	15	1	+	4.941857244185339	5.2057743039958915	AGACAATGACATTTTGT
chr18	43957160	43957161	chr18:43957161:A:G	rs74756344	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr18	43970816	43970817	chr18:43970817:A:G	rs6507555	A	G	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr18	44287616	44287617	chr18:44287617:G:C	rs17769286	G	C	G	Sox3.mouse_HMG_1	3	1	-	2.5768764641919524	-4.330158555465702	CAACAACTGCAATGTTG
chr18	44497939	44497940	chr18:44497940:A:G	rs17778071	A	G	A	Sox3.mouse_HMG_1	14	1	-	6.617179549741056	0.5072886344923497	AAACCATGCCAGTGTTC
chr18	45518309	45518310	chr18:45518310:C:A	rs2543029	C	A	a	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr18	45792889	45792890	chr18:45792890:G:C	rs1944340	G	C	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr18	45983385	45983386	chr18:45983386:G:A	rs920294	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr18	46181708	46181709	chr18:46181709:C:T	rs555861532	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr18	46274647	46274648	chr18:46274648:T:C	rs73956287	T	C	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr18	46388321	46388322	chr18:46388322:C:T	rs56203809	C	T	c	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr18	46555063	46555064	chr18:46555064:A:G	rs732108	A	G	A	Sox3.mouse_HMG_1	8	1	+	3.0883531165368083	2.061939641526172	AAGCTATAATAATGTTT
chr18	46555086	46555087	chr18:46555087:G:A	rs732109	G	A	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr18	46706473	46706474	chr18:46706474:G:C	rs2155986	G	C	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr18	46794717	46794718	chr18:46794718:A:G	rs512699	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr18	47771434	47771435	chr18:47771435:T:C	rs2852949	T	C	C	Sox3.mouse_HMG_1	4	1	-	3.5406092840190837	-3.2717158079581563	CAGAAATAGAATTGTTG
chr18	48226477	48226478	chr18:48226478:G:A	rs73433342	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr18	48344988	48344989	chr18:48344989:T:G	chr18:48344989:T:G	T	G	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr18	48681120	48681121	chr18:48681121:C:T	rs184505240	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr18	48826761	48826762	chr18:48826762:T:G	rs11665341	T	G	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr18	48960674	48960675	chr18:48960675:T:C	rs139770888	T	C	T	Sox3.mouse_HMG_1	14	1	+	15.803384768431085	9.69349385318238	AAACAATGTAAGTGTTT
chr18	48960680	48960681	chr18:48960681:G:A	rs78574740	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr18	48972921	48972922	chr18:48972922:C:T	rs6507881	C	T	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr18	49098282	49098283	chr18:49098283:G:A	rs861300	G	A	G	Sox3.mouse_HMG_1	13	1	+	2.965946722071285	-3.1421590679546307	AAAAAATTATTGTGTTT
chr18	49274558	49274559	chr18:49274559:A:G	rs191100712	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr18	49625214	49625215	chr18:49625215:A:C	rs75855984	A	C	A	Sox3.mouse_HMG_1	10	1	+	1.9100026447267195	-4.654652809854542	AAACAAAGGCACTGTCT
chr18	49631955	49631956	chr18:49631956:C:A	rs9304382	C	A	c	Sox3.mouse_HMG_1	13	1	-	5.345693453480325	-1.0234261619152099	GAACTATGGTATTGCTT
chr18	49648518	49648519	chr18:49648519:G:T	rs7227855	G	T	t	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr18	49648555	49648556	chr18:49648556:C:G	rs7231371	C	G	g	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr18	49834448	49834449	chr18:49834449:G:A	rs7244073	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr18	49864654	49864655	chr18:49864655:T:G	rs12965607	T	G	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr18	49907374	49907375	chr18:49907375:G:C	rs55754534	G	C	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr18	50128171	50128172	chr18:50128172:T:C	rs78000200	T	C	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr18	50278238	50278239	chr18:50278239:A:G	rs79995606	A	G	a	Sox3.mouse_HMG_1	10	1	-	3.679948052839144	3.928227577424896	AAACAATTCATTAGTTT
chr18	50819849	50819850	chr18:50819850:T:C	rs58842724	T	C	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr18	50819855	50819856	chr18:50819856:C:T	rs146595650	C	T	C	Sox3.mouse_HMG_1	0	1	+	2.3848774635268364	1.951314650562791	CGACAAGAATATTGTAG
chr18	51445887	51445888	chr18:51445888:G:A	rs321861	G	A	A	Sox3.mouse_HMG_1	13	1	+	9.504268326716426	3.396162536690511	AAACAATACTGGTGTTT
chr18	51497937	51497938	chr18:51497938:A:G	rs75865999	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr18	51731239	51731240	chr18:51731240:G:A	rs16953869	G	A	G	Sox3.mouse_HMG_1	16	1	+	4.440744436495545	4.0069129917744375	AAACAATACAAGTGACG
chr18	53127770	53127771	chr18:53127771:G:A	rs72921410	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr18	53427428	53427429	chr18:53427429:T:C	rs1502236	T	C	T	Sox3.mouse_HMG_1	2	1	-	6.656278893187331	2.2483439142068686	TAACAATTGAATTCTTA
chr18	53907045	53907046	chr18:53907046:A:C	rs6508273	A	C	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr18	54118669	54118670	chr18:54118670:T:G	rs922074	T	G	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr18	54737177	54737178	chr18:54737178:A:G	rs28434600	A	G	A	Sox3.mouse_HMG_1	7	1	+	5.2026150482615	5.698685368038811	GAACCATATCATAGTTT
chr18	54814351	54814352	chr18:54814352:A:G	rs8085272	A	G	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr18	55098051	55098052	chr18:55098052:A:C	rs56403421	A	C	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr18	55122766	55122767	chr18:55122767:G:A	rs9950306	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr18	55272789	55272790	chr18:55272790:T:C	rs149891170	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr18	55272823	55272824	chr18:55272824:A:C	rs113860260	A	C	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr18	56652282	56652283	chr18:56652283:T:C	rs596755	T	C	T	Sox3.mouse_HMG_1	11	1	+	1.4069508432446503	-4.650505265715702	CTGCATTGATATTGTTG
chr18	56908196	56908197	chr18:56908197:C:T	rs4801059	C	T	c	Sox3.mouse_HMG_1	9	1	+	3.075241136749489	3.0395350118649214	GAAAAATAGCATTGCTA
chr18	56915613	56915614	chr18:56915614:T:C	rs9653061	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr18	56919432	56919433	chr18:56919433:T:C	rs7245128	T	C	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr18	56953953	56953954	chr18:56953954:A:G	rs28370436	A	G	A	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr18	57432174	57432175	chr18:57432175:C:T	rs79138467	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr18	57432703	57432704	chr18:57432704:A:G	rs9944899	A	G	G	Sox3.mouse_HMG_1	16	1	-	2.170381450574221	-1.4314152150467614	GAACAATATTTGTTTTT
chr18	57434683	57434684	chr18:57434684:G:A	rs3760615	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr18	57533252	57533253	chr18:57533253:G:C	rs656431	G	C	C	Sox3.mouse_HMG_1	9	1	-	0.3595464787201796	-5.677097527830252	AAGCAAAGCCAGTGTCG
chr18	57658596	57658597	chr18:57658597:C:T	rs317827	C	T	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr18	57668007	57668008	chr18:57668008:A:G	rs4940499	A	G	A	Sox3.mouse_HMG_1	16	1	-	3.999748084491321	0.3979514188703388	TGGCAATAAAATTGTAT
chr18	57942729	57942730	chr18:57942730:A:G	rs80298740	A	G	A	Sox3.mouse_HMG_1	11	1	+	5.406020999143626	9.140498426189373	GAACAATGAAAATGCTT
chr18	57962407	57962408	chr18:57962408:A:G	rs12454166	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr18	57994064	57994065	chr18:57994065:C:T	rs9646592	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr18	58024485	58024486	chr18:58024486:T:G	rs558972975	T	G	t	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr18	58135803	58135804	chr18:58135804:C:T	rs137964611	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr18	58195926	58195927	chr18:58195927:A:G	rs4941364	A	G	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr18	58293317	58293318	chr18:58293318:C:T	rs9956458	C	T	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr18	58293344	58293345	chr18:58293345:G:T	rs9955824	G	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr18	58319836	58319837	chr18:58319837:A:G	rs17064780	A	G	a	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr18	58319860	58319861	chr18:58319861:G:T	rs62096394	G	T	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr18	58548804	58548805	chr18:58548805:A:G	rs72629867	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr18	58576565	58576566	chr18:58576566:T:C	rs7229323	T	C	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr18	58605251	58605252	chr18:58605252:T:A	rs570205330	T	A	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr18	58639012	58639013	chr18:58639013:A:C	rs74827833	A	C	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr18	58776730	58776731	chr18:58776731:G:C	rs2874118	G	C	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr18	58779669	58779670	chr18:58779670:A:G	rs7238068	A	G	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr18	58819405	58819406	chr18:58819406:C:T	rs8097863	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr18	58892718	58892719	chr18:58892719:G:C	rs12454263	G	C	G	Sox3.mouse_HMG_1	11	1	+	1.786037334264314	-2.143440107835159	AAGCAATGTTCGTGTAG
chr18	59376865	59376866	chr18:59376866:C:T	rs75684151	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr18	59376879	59376880	chr18:59376880:A:G	rs4940458	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr18	59376892	59376893	chr18:59376893:G:T	rs4940459	G	T	T	Sox3.mouse_HMG_1	4	1	-	2.8792070107521255	9.60452072573973	TAGCCATATAATTGTTA
chr18	59389533	59389534	chr18:59389534:G:T	rs8087926	G	T	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr18	59402532	59402533	chr18:59402533:G:T	rs911061995	G	T	G	Sox3.mouse_HMG_1	9	1	-	5.350725544111722	3.8970811572826225	CAGCAATGGCAGTGTCA
chr18	59663401	59663402	chr18:59663402:C:T	rs28663389	C	T	C	Sox3.mouse_HMG_1	8	1	+	5.890723109644498	6.203462334555041	AGACAGTGCCAGTGTTT
chr18	59721745	59721746	chr18:59721746:T:C	rs11665143	T	C	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr18	59752738	59752739	chr18:59752739:A:G	rs114773846	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr18	60189996	60189997	chr18:60189997:T:A	rs484094	T	A	T	Sox3.mouse_HMG_1	10	1	-	4.091567464047756	-2.721367515119257	AAACAATGGTAGATTTG
chr18	60277871	60277872	chr18:60277872:G:A	rs2168709	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr18	60407353	60407354	chr18:60407354:T:C	rs11661470	T	C	T	Sox3.mouse_HMG_1	10	1	-	4.597724931537436	-2.3105202274339023	GAAAAATGACATTGCTA
chr18	61127608	61127609	chr18:61127609:T:C	rs242719	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr18	61555182	61555183	chr18:61555183:T:G	rs181891384	T	G	T	Sox3.mouse_HMG_1	15	1	+	2.00950411436576	-2.5569147432402746	GAACAAAAAACTTGTTA
chr18	61603152	61603153	chr18:61603153:T:C	rs117774485	T	C	T	Sox3.mouse_HMG_1	2	1	-	2.284974421431408	-2.122960557549052	CAACCATGACATTATAT
chr18	61960554	61960555	chr18:61960555:C:A	rs139735668	C	A	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr18	61960564	61960565	chr18:61960565:A:T	rs528405	A	T	A	Sox3.mouse_HMG_1	12	1	-	4.589949970927788	-0.9982421027053235	AAACAACTGTATTTTTT
chr18	62328951	62328952	chr18:62328952:G:A	rs76382273	G	A	G	Sox3.mouse_HMG_1	3	1	-	3.8926259966752834	-2.0901501214590397	GCACATTTTTATTGTTT
chr18	62332446	62332447	chr18:62332447:A:G	rs4547437	A	G	G	Sox3.mouse_HMG_1	4	1	+	3.863830055637851	-2.9484950363393843	AATCAATTCCATTTTTA
chr18	62378970	62378971	chr18:62378971:C:T	rs12954567	C	T	C	Sox3.mouse_HMG_1	9	1	+	6.726053662524087	6.69034753763952	CCACAATGACATTGATG
chr18	62915304	62915305	chr18:62915305:C:T	rs484380	C	T	C	Sox3.mouse_HMG_1	0	1	-	2.422845912194718	3.7956625776562554	GGCCAATCATATTGTTT
chr18	63253620	63253621	chr18:63253621:C:T	rs17758695	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr18	63254175	63254176	chr18:63254176:G:C	rs74843171	G	C	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr18	63476211	63476212	chr18:63476212:A:G	rs62099999	A	G	A	Sox3.mouse_HMG_1	14	1	-	1.9630788799812469	-4.146812035267461	AAACAATAGCCTAGTGT
chr18	63580079	63580080	chr18:63580080:T:C	rs9948949	T	C	C	Sox3.mouse_HMG_1	14	1	+	4.296191264535222	-1.8136996507134853	AAGCAATAACATTATAA
chr18	63617844	63617845	chr18:63617845:T:C	rs75030349	T	C	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr18	63712264	63712265	chr18:63712265:T:C	rs4940594	T	C	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr18	63763994	63763995	chr18:63763995:T:C	rs1506413	T	C	T	Sox3.mouse_HMG_1	10	1	-	7.81829472240735	0.9100495634360117	ATACAATTGTATTGTAA
chr18	64219367	64219368	chr18:64219368:G:C	rs77389193	G	C	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr18	64258405	64258406	chr18:64258406:C:T	rs11876027	C	T	C	Sox3.mouse_HMG_1	0	1	+	5.444620525492613	5.011057712528567	CAACAATCTTAGTGTGT
chr18	64365277	64365278	chr18:64365278:T:C	rs2059004	T	C	C	Sox3.mouse_HMG_1	12	1	+	4.983631289989189	-1.2228342952286624	AAATGATGGCATTGTTA
chr18	64786049	64786050	chr18:64786050:G:A	rs778778	G	A	A	Sox3.mouse_HMG_1	1	1	-	3.2183253384488344	3.9658413084357447	ACGCAATATCAGTGTAT
chr18	64887143	64887144	chr18:64887144:T:A	rs2849342	T	A	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr18	65280078	65280079	chr18:65280079:A:G	rs682165	A	G	A	Sox3.mouse_HMG_1	6	1	-	1.389047259235038	-5.257043510393881	GAACAATGGCCTTGAGT
chr18	65280094	65280095	chr18:65280095:A:G	rs577092165	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr18	65756478	65756479	chr18:65756479:G:A	rs12966480	G	A	A	Sox3.mouse_HMG_1	11	1	+	3.7647915686729734	0.030314141627226232	AAACTATACCAGTTTTT
chr18	65788354	65788355	chr18:65788355:G:A	rs12457175	G	A	G	Sox3.mouse_HMG_1	3	1	-	1.5642511222098034	-4.4185249959245185	CAACTATTTCAGTGATG
chr18	66433048	66433049	chr18:66433049:A:T	rs11665445	A	T	A	Sox3.mouse_HMG_1	10	1	+	3.208099129874852	-3.6048358492921633	AAATATTTCTATTGTTA
chr18	67429047	67429048	chr18:67429048:T:C	rs62093169	T	C	T	Sox3.mouse_HMG_1	5	1	-	6.927986684400552	0.20185320709809962	GAACAATAAAAGTGGTA
chr18	67621148	67621149	chr18:67621149:G:A	rs875922	G	A	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr18	67621154	67621155	chr18:67621155:A:G	rs894909	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr18	67784020	67784021	chr18:67784021:G:T	rs8085826	G	T	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr18	68034178	68034179	chr18:68034179:T:C	rs4383253	T	C	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr18	68035065	68035066	chr18:68035066:G:A	rs1518020	G	A	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr18	68377067	68377068	chr18:68377068:T:C	rs17079006	T	C	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr18	68457151	68457152	chr18:68457152:T:A	rs7235203	T	A	T	Sox3.mouse_HMG_1	10	1	-	1.9731589090389094	-4.839776070128107	TTACATTATCAGTGTTG
chr18	69999670	69999671	chr18:69999671:G:A	rs11151553	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr18	70251135	70251136	chr18:70251136:G:C	rs72963687	G	C	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr18	70276552	70276553	chr18:70276553:C:T	rs73470634	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr18	70292370	70292371	chr18:70292371:G:A	rs41322446	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr18	70472868	70472869	chr18:70472869:G:A	rs9965095	G	A	a	Sox3.mouse_HMG_1	8	1	-	4.213808066957814	4.526547291868354	TAACAATGCTAGTTTCT
chr18	70672813	70672814	chr18:70672814:C:T	rs556807958	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr18	71060746	71060747	chr18:71060747:G:A	rs17083488	G	A	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr18	71060768	71060769	chr18:71060769:C:T	rs143140137	C	T	C	Sox3.mouse_HMG_1	7	1	-	1.6201330124866158	1.124062692709305	CAGAAATGACAATGTTT
chr18	71166030	71166031	chr18:71166031:C:T	rs12967700	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr18	72351787	72351788	chr18:72351788:G:T	rs12961877	G	T	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr18	73281187	73281188	chr18:73281188:A:G	rs4991859	A	G	A	Sox3.mouse_HMG_1	11	1	-	3.57986681993433	-2.4775892890260227	AAACCAGTAAATTGTTT
chr18	73283876	73283877	chr18:73283877:A:C	rs79675858	A	C	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr18	73283878	73283879	chr18:73283879:T:C	rs4619489	T	C	C	Sox3.mouse_HMG_1	16	1	-	6.337605374275804	6.771436818996912	AAGCAATAAAATTGCTA
chr18	73381862	73381863	chr18:73381863:C:G	rs34368689	C	G	C	Sox3.mouse_HMG_1	2	1	-	3.6572899376934105	1.6398900369525582	AGGCAATAAAAATGTTT
chr18	73826334	73826335	chr18:73826335:C:T	rs9947436	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr18	74299629	74299630	chr18:74299630:A:C	rs1790810	A	C	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr18	74511174	74511175	chr18:74511175:C:T	rs8088885	C	T	.	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr18	74595362	74595363	chr18:74595363:G:T	rs79230157	G	T	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr18	74631224	74631225	chr18:74631225:A:G	rs3794942	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr18	75055312	75055313	chr18:75055313:G:T	rs17056226	G	T	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr18	75128636	75128637	chr18:75128637:A:G	rs17264285	A	G	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr18	75218543	75218544	chr18:75218544:G:A	chr18:75218544:G:A	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr18	75678851	75678852	chr18:75678852:C:A	rs35561306	C	A	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr18	75679347	75679348	chr18:75679348:C:T	rs2584469	C	T	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr18	75774750	75774751	chr18:75774751:T:C	rs7228749	T	C	C	Sox3.mouse_HMG_1	8	1	-	1.7885471292670008	0.7621336542563648	ACACGATGACATTGTGA
chr18	75775277	75775278	chr18:75775278:A:C	rs1539982	A	C	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr18	75800470	75800471	chr18:75800471:G:A	rs143838721	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr18	76258351	76258352	chr18:76258352:T:C	rs12969731	T	C	T	Sox3.mouse_HMG_1	2	1	-	2.734318596601718	-1.6736163823787436	AAACACTGAAAGTGCTG
chr18	76559528	76559529	chr18:76559529:C:T	rs17059541	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr18	76757287	76757288	chr18:76757288:A:G	rs9807771	A	G	G	Sox3.mouse_HMG_1	12	1	-	5.9362528046802865	-0.27021278053756503	GAATAATGTTACTGTTT
chr18	76992023	76992024	chr18:76992024:G:A	rs470443	G	A	A	Sox3.mouse_HMG_1	9	1	-	1.9002247748214909	1.8645186499369213	GAACAATGTCGGTGCTG
chr18	77109542	77109543	chr18:77109543:G:A	rs7244713	G	A	G	Sox3.mouse_HMG_1	2	1	+	1.6598791692650456	6.067814148245505	AAGCAATGGGATTATTG
chr18	77162278	77162279	chr18:77162279:C:G	rs12604991	C	G	C	Sox3.mouse_HMG_1	7	1	-	4.608320168358076	-1.0123719665666977	TAAAAATGATTTTGTTT
chr18	77529074	77529075	chr18:77529075:G:T	rs141929088	G	T	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr18	77709105	77709106	chr18:77709106:C:T	rs1393717	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr18	78080413	78080414	chr18:78080414:G:A	rs113766774	G	A	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr18	78242725	78242726	chr18:78242726:A:G	rs117208583	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr18	78603656	78603657	chr18:78603657:A:G	rs75897938	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr18	78797634	78797635	chr18:78797635:G:A	rs75552087	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr18	78945613	78945614	chr18:78945614:A:G	rs11664610	A	G	A	Sox3.mouse_HMG_1	8	1	-	2.6772505582718877	2.3645113333613454	CAGCAATGTTATTATGT
chr18	79010819	79010820	chr18:79010820:A:G	rs9959454	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr18	79379493	79379494	chr18:79379494:C:A	rs11872421	C	A	A	Sox3.mouse_HMG_1	15	1	+	7.084812518663835	7.890470694666847	GAATAATAACATTGTCG
chr18	79387639	79387640	chr18:79387640:G:A	rs9807411	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr18	79387641	79387642	chr18:79387642:G:C	rs304920	G	C	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr18	79387660	79387661	chr18:79387661:G:C	rs304921	G	C	G	Sox3.mouse_HMG_1	8	1	-	4.789398704808823	4.895545693177263	GAACAATGCTGTTGTGA
chr18	79515788	79515789	chr18:79515789:T:C	rs446628	T	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr18	80202462	80202463	chr18:80202463:T:A	rs145152412	T	A	t	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr19	93541	93542	chr19:93542:G:T	rs143501051	G	T	g	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr19	93580	93581	chr19:93581:C:T	rs62101649	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr19	367978	367979	chr19:367979:A:G	rs688169	A	G	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr19	376584	376585	chr19:376585:C:T	rs3764572	C	T	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr19	376592	376593	chr19:376593:A:G	rs905972151	A	G	A	Sox3.mouse_HMG_1	14	1	-	2.1043191707349	-4.005571744513807	TAACCATTATTTTGTTG
chr19	506821	506822	chr19:506822:C:A	rs140101884	C	A	C	Sox3.mouse_HMG_1	3	1	+	-1.043820514344632	-7.7685339772083335	GAGCCATGGCAGAGTTT
chr19	543883	543884	chr19:543884:T:C	rs16990730	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr19	605227	605228	chr19:605228:C:T	rs80135478	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr19	605232	605233	chr19:605233:C:T	rs116723556	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr19	887127	887128	chr19:887128:A:G	rs2930902	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr19	1045335	1045336	chr19:1045336:A:C	rs139890952	A	C	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr19	1045373	1045374	chr19:1045374:C:T	rs73505207	C	T	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr19	1414395	1414396	chr19:1414396:T:G	rs372163718	T	G	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr19	1609435	1609436	chr19:1609436:T:A	rs1052954	T	A	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr19	1802942	1802943	chr19:1802943:C:T	rs76861062	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr19	1988587	1988588	chr19:1988588:G:A	rs12977902	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr19	2060234	2060235	chr19:2060235:T:C	rs72981455	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr19	2080051	2080052	chr19:2080052:C:T	rs7256023	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr19	2085347	2085348	chr19:2085348:A:G	rs28408648	A	G	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr19	2183175	2183176	chr19:2183176:G:T	rs2864419	G	T	T	Sox3.mouse_HMG_1	8	1	-	0.34038090048079467	1.4729413638598718	AAACAACACCACTGTGG
chr19	2285196	2285197	chr19:2285197:T:C	rs757233	T	C	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr19	2371246	2371247	chr19:2371247:G:A	rs2891697	G	A	-	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr19	2475276	2475277	chr19:2475277:C:G	rs796073189	C	G	C	Sox3.mouse_HMG_1	13	1	-	-1.4093231061648794	-7.517428896190796	GGAGAAAGCCATTGTTG
chr19	2475290	2475291	chr19:2475291:A:C	rs3783492	A	C	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr19	2533810	2533811	chr19:2533811:T:C	rs114956775	T	C	T	Sox3.mouse_HMG_1	14	1	+	4.780715849690533	-1.3291750655581749	AAACAACAAAAATGTTG
chr19	2549916	2549917	chr19:2549917:T:C	rs75484337	T	C	T	Sox3.mouse_HMG_1	16	1	+	0.30800607147550585	-3.2937905941454764	TAACAATGAAATGGAGT
chr19	2569947	2569948	chr19:2569948:T:G	rs10416033	T	G	G	Sox3.mouse_HMG_1	6	1	+	0.4886152788493938	-6.4198397552470166	GAGCAATGTCAGTGACA
chr19	2605014	2605015	chr19:2605015:T:A	rs75711640	T	A	t	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr19	2607358	2607359	chr19:2607359:T:C	rs11084946	T	C	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr19	2685809	2685810	chr19:2685810:G:A	rs111772174	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr19	2703031	2703032	chr19:2703032:A:G	rs113391116	A	G	A	Sox3.mouse_HMG_1	5	1	+	0.08990345582492187	-6.636230021477534	GAAGAATGTCAGTGATC
chr19	2782369	2782370	chr19:2782370:A:G	rs1736188	A	G	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr19	2819245	2819246	chr19:2819246:T:C	rs2741992	T	C	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr19	3132015	3132016	chr19:3132016:C:T	rs310690	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr19	3682557	3682558	chr19:3682558:G:A	rs28728186	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr19	3737242	3737243	chr19:3737243:A:G	rs487980	A	G	a	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr19	4132151	4132152	chr19:4132152:A:C	rs28823729	A	C	A	Sox3.mouse_HMG_1	14	1	-	-0.14025325517647708	-6.566902506958474	TAAAAATGGCATTATAG
chr19	4414712	4414713	chr19:4414713:C:T	rs105038	C	T	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr19	4608235	4608236	chr19:4608236:A:G	rs867691	A	G	T	Sox3.mouse_HMG_1	4	1	+	1.1449558474396566	-5.667369244537579	GAGCAATGATTGTGTCT
chr19	4647045	4647046	chr19:4647046:G:A	rs118101039	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr19	4693336	4693337	chr19:4693337:G:A	rs117465167	G	A	G	Sox3.mouse_HMG_1	5	1	-	-1.4491509055597172	-1.5444610853640417	GCACACTGACAGTGTCA
chr19	4726300	4726301	chr19:4726301:C:G	rs935414667	C	G	c	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr19	4976595	4976596	chr19:4976596:G:A	rs112220911	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr19	4976821	4976822	chr19:4976822:T:C	rs573891165	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr19	4980120	4980121	chr19:4980121:A:G	rs62114274	A	G	g	Sox3.mouse_HMG_1	12	1	-	0.3453874626093508	-5.861078122608501	AAACCACTAAATTGTAT
chr19	5166402	5166403	chr19:5166403:G:A	rs76744281	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr19	5253420	5253421	chr19:5253421:A:G	rs886936	A	G	A	Sox3.mouse_HMG_1	5	1	-	0.40226218387914064	0.4975723636834663	AAGTATTTACATTGTTG
chr19	5481288	5481289	chr19:5481289:T:C	rs11085140	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr19	5689474	5689475	chr19:5689475:T:C	rs114189543	T	C	T	Sox3.mouse_HMG_1	5	1	-	-0.917108288047708	-7.643241765350167	AAAAAAAGGTATTGGTT
chr19	5689481	5689482	chr19:5689482:T:A	rs78229878	T	A	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr19	5720371	5720372	chr19:5720372:A:C	rs72979079	A	C	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr19	5720372	5720373	chr19:5720373:G:A	rs189210845	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr19	5720376	5720377	chr19:5720377:C:A	rs144543071	C	A	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr19	5720392	5720393	chr19:5720393:A:G	rs180683901	A	G	A	Sox3.mouse_HMG_1	2	1	+	9.23573429878432	4.82779931980386	AAACACTGGTAGTGTTG
chr19	6067729	6067730	chr19:6067730:G:T	rs73923435	G	T	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr19	6077108	6077109	chr19:6077109:A:G	rs146449661	A	G	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr19	6342045	6342046	chr19:6342046:A:G	rs7248589	A	G	G	Sox3.mouse_HMG_1	5	1	+	-0.2384342525486901	-6.964567729851148	GGAAAATGAACTTGTTT
chr19	6494359	6494360	chr19:6494360:G:C	rs1053395	G	C	-	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr19	6556896	6556897	chr19:6556897:T:A	rs148922580	T	A	t	Sox3.mouse_HMG_1	0	1	-	6.4098821419422425	4.3867278166259975	AAATAATAAAAATGTTT
chr19	6627562	6627563	chr19:6627563:C:T	rs426868	C	T	N	Sox3.mouse_HMG_1	16	1	-	0.6847291785504594	0.2508977338293523	AAAGAATAATTTTGTCG
chr19	6796167	6796168	chr19:6796168:G:T	rs76648517	G	T	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr19	6860875	6860876	chr19:6860876:C:T	rs11672182	C	T	T	Sox3.mouse_HMG_1	3	1	+	1.0870698524597873	-4.895706265674533	TAACAGTTGTATTTTTA
chr19	6903284	6903285	chr19:6903285:T:C	rs388089	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr19	7145619	7145620	chr19:7145620:G:C	rs12461909	G	C	G	Sox3.mouse_HMG_1	0	1	-	1.5460326189196267	1.7628074658102866	CTACAATGACAGAGTAG
chr19	7259416	7259417	chr19:7259417:A:C	rs8109308	A	C	C	Sox3.mouse_HMG_1	0	1	+	0.0794628946842843	-1.510128617667916	AATAAATAAGATTGTTG
chr19	7360926	7360927	chr19:7360927:G:A	rs76506685	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr19	7369749	7369750	chr19:7369750:C:T	rs8112891	C	T	T	Sox3.mouse_HMG_1	13	1	-	0.7951059848987213	-5.312999805127195	ATGCAATGGCATAGTAT
chr19	7380702	7380703	chr19:7380703:C:A	rs10401596	C	A	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr19	7398811	7398812	chr19:7398812:T:C	rs148597690	T	C	T	Sox3.mouse_HMG_1	0	1	-	1.4808757885371462	0.10805912307560761	AAACAATGTATGTGCTA
chr19	7476513	7476514	chr19:7476514:C:G	rs2335187	C	G	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr19	7479701	7479702	chr19:7479702:A:G	rs1549257	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr19	7795877	7795878	chr19:7795878:T:C	rs10401786	T	C	c	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr19	7803164	7803165	chr19:7803165:C:T	rs192039199	C	T	-	Sox3.mouse_HMG_1	2	1	-	0.40750931720141026	4.8154442961818695	AAGTAATAGAAGTGTCT
chr19	7803186	7803187	chr19:7803187:G:C	rs12980335	G	C	-	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr19	8025497	8025498	chr19:8025498:A:G	rs12972953	A	G	g	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr19	8162634	8162635	chr19:8162635:T:C	rs4286207	T	C	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr19	8246098	8246099	chr19:8246099:C:A	rs2927719	C	A	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr19	8246135	8246136	chr19:8246136:G:C	rs2927718	G	C	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr19	8269553	8269554	chr19:8269554:A:T	rs2913933	A	T	T	Sox3.mouse_HMG_1	2	1	+	0.2834804332894209	-5.6186063026673425	AAAAAATAACAGTGCAG
chr19	8356343	8356344	chr19:8356344:G:A	rs116636690	G	A	G	Sox3.mouse_HMG_1	1	1	+	4.119220516864287	8.446653860266979	CGAAAATATCAGTGTTT
chr19	8488515	8488516	chr19:8488516:G:A	rs1599870	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr19	8821847	8821848	chr19:8821848:T:C	rs12978839	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.6384634913877627	-5.087669985914696	AGAAAATGTCAGTGTGT
chr19	8938472	8938473	chr19:8938473:G:A	rs12461007	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr19	9055113	9055114	chr19:9055114:C:G	rs11085827	C	G	C	Sox3.mouse_HMG_1	3	1	+	2.0430473137836898	-4.863987705873962	AAACAATAAAACAGTGT
chr19	9581880	9581881	chr19:9581881:T:C	rs8102702	T	C	C	Sox3.mouse_HMG_1	7	1	-	0.19799081070389968	0.6940611304812105	AAAAAATAGCACTGTCA
chr19	9584608	9584609	chr19:9584609:A:G	rs943662458	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr19	9584646	9584647	chr19:9584647:C:T	rs142849458	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr19	9741723	9741724	chr19:9741724:A:T	rs72489406	A	T	A	Sox3.mouse_HMG_1	6	1	-	1.1489106502029025	-5.759544383893508	TAAGAATACCAGTTTTT
chr19	9987254	9987255	chr19:9987255:A:C	rs8101390	A	C	A	Sox3.mouse_HMG_1	7	1	-	1.9661569141262187	3.503706018868374	GCGCAATTTCATTGTAG
chr19	10126508	10126509	chr19:10126509:A:G	rs60553752	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr19	10145109	10145110	chr19:10145110:G:A	rs10412529	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr19	10191415	10191416	chr19:10191416:T:C	rs572771476	T	C	T	Sox3.mouse_HMG_1	4	1	-	3.052601033711816	-3.75972405826542	AGACATTGAAATTGTAG
chr19	10362715	10362716	chr19:10362716:G:A	rs280521	G	A	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr19	10421975	10421976	chr19:10421976:C:G	rs115702202	C	G	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr19	10421975	10421976	chr19:10421976:C:T	chr19:10421976:C:T	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr19	10421977	10421978	chr19:10421978:G:A	rs74806945	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr19	10426415	10426416	chr19:10426416:C:T	rs7249459	C	T	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr19	10661435	10661436	chr19:10661436:T:C	rs2043304	T	C	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr19	10662520	10662521	chr19:10662521:G:C	rs75482781	G	C	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr19	10662547	10662548	chr19:10662548:C:G	rs116886189	C	G	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr19	11145115	11145116	chr19:11145116:C:T	rs113568099	C	T	C	Sox3.mouse_HMG_1	8	1	-	-1.193519448869791	-0.16710597385915515	GAGCCATGGTAGTGTCA
chr19	11374460	11374461	chr19:11374461:T:C	rs34651602	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr19	11396969	11396970	chr19:11396970:A:T	rs367071	A	T	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr19	11452151	11452152	chr19:11452152:C:T	rs911631769	C	T	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr19	11560949	11560950	chr19:11560950:G:C	rs11882456	G	C	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr19	11815608	11815609	chr19:11815609:A:G	rs146820173	A	G	A	Sox3.mouse_HMG_1	5	1	+	7.474310503208112	0.7481770259056549	TAACAATTAAAGAGTTT
chr19	11815622	11815623	chr19:11815623:G:A	rs7251759	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr19	11831799	11831800	chr19:11831800:A:C	rs394416	A	C	C	Sox3.mouse_HMG_1	11	1	-	0.7211039946536356	-1.4068746722072447	AGACAATGGAATGCTTT
chr19	11881122	11881123	chr19:11881123:G:A	rs28895888	G	A	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr19	11881146	11881147	chr19:11881147:C:T	rs12459059	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr19	12105942	12105943	chr19:12105943:G:T	rs66539237	G	T	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr19	12274778	12274779	chr19:12274779:A:C	rs12609128	A	C	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr19	12384207	12384208	chr19:12384208:C:A	rs8105975	C	A	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr19	12401515	12401516	chr19:12401516:T:G	rs10419804	T	G	g	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr19	12630709	12630710	chr19:12630710:T:A	rs118082271	T	A	t	Sox3.mouse_HMG_1	12	1	+	9.590360602850138	4.002168529217026	AGACAATGATATTGATG
chr19	12669693	12669694	chr19:12669694:A:T	chr19:12669694:A:T	A	T	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr19	12676332	12676333	chr19:12676333:G:A	rs111806312	G	A	G	Sox3.mouse_HMG_1	13	1	+	1.8355853352216376	-4.272520454804279	CAACGATGGCTGTGTTT
chr19	12890832	12890833	chr19:12890833:A:G	rs1376310678	A	G	A	Sox3.mouse_HMG_1	11	1	-	0.20235335127502835	-5.855102757685325	AAACAAAGAAATTCTGG
chr19	12890855	12890856	chr19:12890856:C:T	chr19:12890856:C:T	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr19	12890856	12890857	chr19:12890857:C:T	rs1416835642	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr19	12919606	12919607	chr19:12919607:C:T	rs552584773	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr19	12950754	12950755	chr19:12950755:A:G	rs62109870	A	G	A	Sox3.mouse_HMG_1	10	1	+	5.136516708447986	-1.7717284505233521	ATACAATGGTAGAGTTA
chr19	13117880	13117881	chr19:13117881:G:A	rs4302161	G	A	-	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr19	13484301	13484302	chr19:13484302:C:T	rs61076736	C	T	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr19	13787674	13787675	chr19:13787675:A:C	rs1287688616	A	C	-	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr19	13795414	13795415	chr19:13795415:G:C	rs3745458	G	C	g	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr19	13828036	13828037	chr19:13828037:G:C	rs113917348	G	C	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr19	13858778	13858779	chr19:13858779:C:A	chr19:13858779:C:A	C	A	c	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr19	13900119	13900120	chr19:13900120:A:G	rs7507907	A	G	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr19	14449566	14449567	chr19:14449567:T:A	rs3729531	T	A	T	Sox3.mouse_HMG_1	0	1	-	1.9306355055593454	-0.09251881975689957	AAATAATAATACTGTCA
chr19	14456380	14456381	chr19:14456381:T:C	rs6511932	T	C	C	Sox3.mouse_HMG_1	16	1	-	4.454824792285187	4.888656237006295	AAACAATGCTTTTTTTA
chr19	14835204	14835205	chr19:14835205:T:C	rs7258295	T	C	.	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr19	15326672	15326673	chr19:15326673:G:A	rs72994031	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr19	15402032	15402033	chr19:15402033:A:T	rs10775619	A	T	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr19	15574660	15574661	chr19:15574661:T:G	rs62115110	T	G	t	Sox3.mouse_HMG_1	3	1	-	-0.0074995059418832	6.717213956921814	TAAAAATGCTAGTGTGC
chr19	15579854	15579855	chr19:15579855:C:T	rs11666356	C	T	c	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr19	15974785	15974786	chr19:15974786:T:G	rs11086017	T	G	A	Sox3.mouse_HMG_1	14	1	+	-0.03076559733103973	-6.457414849113037	AAAAAATGGAATGGTAG
chr19	15993694	15993695	chr19:15993695:A:T	rs58186219	A	T	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr19	15993695	15993696	chr19:15993696:T:G	rs58994029	T	G	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr19	16077744	16077745	chr19:16077745:A:G	rs4808032	A	G	G	Sox3.mouse_HMG_1	0	1	+	3.828976820267026	2.4561601548054868	AATCAATTGTGTTGTTG
chr19	16077745	16077746	chr19:16077746:A:C	rs4808451	A	C	C	Sox3.mouse_HMG_1	1	1	+	3.828976820267026	-1.8088780759940832	AATCAATTGTGTTGTTG
chr19	16289874	16289875	chr19:16289875:C:A	rs74984744	C	A	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr19	16330033	16330034	chr19:16330034:C:A	rs115642275	C	A	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr19	16445410	16445411	chr19:16445411:G:C	rs79083128	G	C	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr19	16778914	16778915	chr19:16778915:T:C	rs80269479	T	C	.	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr19	16778915	16778916	chr19:16778916:G:A	rs76186997	G	A	.	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr19	17071206	17071207	chr19:17071207:T:C	rs7259348	T	C	C	Sox3.mouse_HMG_1	16	1	-	-0.3824617177942409	0.0513697269268662	GAACAAAGATATGGTCA
chr19	17309355	17309356	chr19:17309356:T:C	rs11086068	T	C	T	Sox3.mouse_HMG_1	8	1	-	0.9636917361398145	-0.06272173887082055	AAGCAATGAAAGTGAGA
chr19	17309363	17309364	chr19:17309364:T:G	rs561198785	T	G	T	Sox3.mouse_HMG_1	0	1	-	0.9636917361398145	-0.6258997762123848	AAGCAATGAAAGTGAGA
chr19	17311592	17311593	chr19:17311593:C:A	rs8100448	C	A	c	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr19	17468707	17468708	chr19:17468708:T:A	rs187880723	T	A	t	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr19	17753544	17753545	chr19:17753545:A:G	rs4808684	A	G	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr19	17847359	17847360	chr19:17847360:G:A	rs8100347	G	A	A	Sox3.mouse_HMG_1	13	1	-	1.6429351846999096	1.3819213593302906	GAATAATAATATTCTGT
chr19	17847372	17847373	chr19:17847373:C:T	rs2382989	C	T	T	Sox3.mouse_HMG_1	0	1	-	1.6429351846999096	3.01575185016145	GAATAATAATATTCTGT
chr19	17930499	17930500	chr19:17930500:G:C	rs12981688	G	C	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr19	17934309	17934310	chr19:17934310:G:A	rs12608804	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr19	18194767	18194768	chr19:18194768:G:C	rs16982263	G	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr19	18194767	18194768	chr19:18194768:G:T	chr19:18194768:G:T	G	T	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr19	18194770	18194771	chr19:18194771:T:A	rs375792025	T	A	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr19	18364262	18364263	chr19:18364263:C:A	rs73009442	C	A	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr19	18711496	18711497	chr19:18711497:A:G	rs74461240	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr19	18740552	18740553	chr19:18740553:C:G	rs553801977	C	G	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr19	19065509	19065510	chr19:19065510:G:C	rs191650164	G	C	G	Sox3.mouse_HMG_1	16	1	+	-1.0267545205118485	-3.6626995453757183	GGACAGTGGCTTTGTTG
chr19	19468747	19468748	chr19:19468748:A:G	rs4808962	A	G	A	Sox3.mouse_HMG_1	16	1	+	-0.7201158319964096	-0.28628438727530253	CAAAAAAGACATTGTCA
chr19	19752156	19752157	chr19:19752157:C:T	rs247790	C	T	c	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr19	19752160	19752161	chr19:19752161:G:C	rs8103257	G	C	g	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr19	19944476	19944477	chr19:19944477:G:A	rs10414919	G	A	N	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr19	19956697	19956698	chr19:19956698:G:T	rs73532745	G	T	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr19	19971823	19971824	chr19:19971824:C:G	rs2335375	C	G	c	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr19	20209381	20209382	chr19:20209382:A:C	rs73542118	A	C	.	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr19	20248022	20248023	chr19:20248023:C:T	rs10417932	C	T	N	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr19	20279768	20279769	chr19:20279769:T:C	rs12461682	T	C	.	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr19	20356864	20356865	chr19:20356865:C:G	rs10416464	C	G	.	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr19	20554311	20554312	chr19:20554312:C:T	rs12609067	C	T	.	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr19	20874039	20874040	chr19:20874040:C:T	rs73007004	C	T	-	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr19	21435808	21435809	chr19:21435809:T:C	rs12150996	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr19	21435826	21435827	chr19:21435827:A:C	rs11671265	A	C	A	Sox3.mouse_HMG_1	10	1	+	4.232416576663655	-2.3322388779176064	AAATAATGTAAGAGTTT
chr19	21678690	21678691	chr19:21678691:T:G	rs143939635	T	G	.	Sox3.mouse_HMG_1	9	1	+	1.2421341933574581	-4.758803688308405	TAAAAATGTTAATGTAT
chr19	21924148	21924149	chr19:21924149:A:G	rs1634459	A	G	a	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr19	21927273	21927274	chr19:21927274:C:A	rs988274	C	A	c	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr19	22332961	22332962	chr19:22332962:T:C	rs113166770	T	C	N	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr19	23510122	23510123	chr19:23510123:G:A	rs7259933	G	A	G	Sox3.mouse_HMG_1	15	1	-	4.134662440633138	8.437164238428622	AGACATTAATATTGTCT
chr19	23777728	23777729	chr19:23777729:C:T	rs115158089	C	T	C	Sox3.mouse_HMG_1	1	1	+	-0.393244644981684	0.35427132500522496	CCACAAGAACATTGTGA
chr19	23901616	23901617	chr19:23901617:T:G	rs6511674	T	G	t	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr19	24033982	24033983	chr19:24033983:G:A	chr19:24033983:G:A	G	A	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr19	24361799	24361800	chr19:24361800:G:A	rs113847235	G	A	.	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr19	24372136	24372137	chr19:24372137:C:T	rs2124632	C	T	.	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr19	24897014	24897015	chr19:24897015:A:G	rs879230966	A	G	.	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr19	27356488	27356489	chr19:27356489:G:A	rs112034523	G	A	.	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr19	27356504	27356505	chr19:27356505:A:G	rs112963531	A	G	.	Sox3.mouse_HMG_1	7	1	-	-0.39660336306681027	-4.479746393249428	AAACAGTTGTTTTGTAG
chr19	28010260	28010261	chr19:28010261:T:C	rs10439140	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.38726856181367	-3.722622353435037	GGAAAATAACATTGTAA
chr19	28160863	28160864	chr19:28160864:G:A	rs79456666	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr19	28325464	28325465	chr19:28325465:C:A	rs75106928	C	A	C	Sox3.mouse_HMG_1	13	1	-	9.655634084849245	3.2865144694537105	AAATAATGACATTGTGT
chr19	28467082	28467083	chr19:28467083:C:T	rs2190830	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr19	28467411	28467412	chr19:28467412:G:A	rs58161486	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr19	28701204	28701205	chr19:28701205:C:A	rs59394095	C	A	C	Sox3.mouse_HMG_1	9	1	+	4.1772236829948115	2.72357929616571	AAACAATGACCGTTTTG
chr19	29120785	29120786	chr19:29120786:T:C	rs10411795	T	C	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr19	29191806	29191807	chr19:29191807:A:C	rs8112447	A	C	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr19	29257931	29257932	chr19:29257932:A:G	rs56014828	A	G	A	Sox3.mouse_HMG_1	12	1	-	2.501282967225044	-3.7051826179928087	CAGAAATGAAAGTGTTA
chr19	29295627	29295628	chr19:29295628:G:A	rs4805365	G	A	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr19	29296523	29296524	chr19:29296524:A:G	rs10404352	A	G	G	Sox3.mouse_HMG_1	2	1	+	2.3069191628534043	-2.101015816127056	GTACAATTATCTTGTAT
chr19	29330186	29330187	chr19:29330187:G:C	rs10853797	G	C	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr19	29330216	29330217	chr19:29330217:G:A	rs10853798	G	A	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr19	29482082	29482083	chr19:29482083:C:A	rs10412058	C	A	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr19	29658730	29658731	chr19:29658731:G:A	rs76456633	G	A	g	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr19	29687585	29687586	chr19:29687586:C:T	rs73033934	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr19	29714943	29714944	chr19:29714944:A:G	rs186970109	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr19	29810627	29810628	chr19:29810628:G:A	rs36225398	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr19	29830816	29830817	chr19:29830817:A:G	rs77319773	A	G	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr19	29846219	29846220	chr19:29846220:A:C	rs4805487	A	C	C	Sox3.mouse_HMG_1	16	1	-	5.120301489983766	4.154449849226654	TGACAATAACAGTGCTT
chr19	29857218	29857219	chr19:29857219:G:C	rs4805490	G	C	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr19	29943381	29943382	chr19:29943382:T:C	rs750680	T	C	T	Sox3.mouse_HMG_1	13	1	-	4.066398129680677	10.174503919706593	TAACAATAAAACTATTT
chr19	30006489	30006490	chr19:30006490:A:G	rs117245076	A	G	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr19	30122684	30122685	chr19:30122685:C:T	rs4804918	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr19	30351298	30351299	chr19:30351299:C:T	rs189199364	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr19	30386905	30386906	chr19:30386906:C:T	rs11084549	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr19	30539633	30539634	chr19:30539634:T:C	rs8104952	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr19	30621631	30621632	chr19:30621632:T:C	rs8109458	T	C	T	Sox3.mouse_HMG_1	12	1	-	5.81242854760455	4.832492550570039	AAACAAAAACATAGTTA
chr19	30642033	30642034	chr19:30642034:A:T	rs2195955	A	T	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr19	30726406	30726407	chr19:30726407:A:T	rs4805605	A	T	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr19	31161860	31161861	chr19:31161861:T:C	rs4804949	T	C	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr19	31164430	31164431	chr19:31164431:T:C	rs7260532	T	C	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr19	31282854	31282855	chr19:31282855:C:T	rs76908175	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr19	31307266	31307267	chr19:31307267:G:A	rs746275995	G	A	G	Sox3.mouse_HMG_1	9	1	-	0.7496980948569568	0.7139919699723881	GTACAATGGCACTCTTT
chr19	31329586	31329587	chr19:31329587:T:C	rs2867598	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.102976931411384	-4.006913983837324	CAGCAATAAAATAGTGT
chr19	31391110	31391111	chr19:31391111:T:A	rs2542295	T	A	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr19	31471389	31471390	chr19:31471390:C:T	rs11669216	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr19	31484620	31484621	chr19:31484621:C:G	rs12973745	C	G	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr19	31838388	31838389	chr19:31838389:C:A	rs146264252	C	A	C	Sox3.mouse_HMG_1	1	1	+	3.3607585951990426	8.998613491460153	ACACAATTTTAGTGATA
chr19	31863227	31863228	chr19:31863228:A:C	rs147791690	A	C	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr19	32039652	32039653	chr19:32039653:T:C	rs16966646	T	C	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr19	32237602	32237603	chr19:32237603:T:G	chr19:32237603:T:G	T	G	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr19	32319322	32319323	chr19:32319323:G:C	rs10417156	G	C	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr19	32647218	32647219	chr19:32647219:G:A	rs259218	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr19	33242756	33242757	chr19:33242757:C:A	rs2007800	C	A	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr19	33260126	33260127	chr19:33260127:C:T	rs67228209	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr19	33466117	33466118	chr19:33466118:T:C	rs117085128	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr19	33478084	33478085	chr19:33478085:T:A	rs61748998	T	A	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr19	33693888	33693889	chr19:33693889:A:G	rs59506029	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr19	33705291	33705292	chr19:33705292:G:A	rs144665404	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr19	33807221	33807222	chr19:33807222:G:A	rs55670241	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr19	33847804	33847805	chr19:33847805:C:T	rs184062	C	T	C	Sox3.mouse_HMG_1	12	1	+	0.5447980772023159	6.751263662420168	GAACAATATTATCGGCT
chr19	34254159	34254160	chr19:34254160:T:C	rs185583631	T	C	T	Sox3.mouse_HMG_1	0	1	+	8.225702934369425	8.65926574733347	TGACAATGGTATTGTGT
chr19	34254179	34254180	chr19:34254180:T:C	chr19:34254180:T:C	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr19	34413633	34413634	chr19:34413634:C:G	rs9653103	C	G	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr19	34475402	34475403	chr19:34475403:G:A	rs78872486	G	A	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr19	34663376	34663377	chr19:34663377:A:G	rs149511866	A	G	A	Sox3.mouse_HMG_1	12	1	+	-0.5447296665716718	-1.524665663606183	ACACAATGGCAGATTTT
chr19	35176288	35176289	chr19:35176289:G:A	rs7255878	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr19	35180587	35180588	chr19:35180588:A:G	rs9304868	A	G	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr19	35228851	35228852	chr19:35228852:T:C	rs536991156	T	C	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr19	35236131	35236132	chr19:35236132:G:A	rs4806117	G	A	A	Sox3.mouse_HMG_1	1	1	+	-1.043057612683847	3.2843757307188453	AGACAAAATCAGGGTTT
chr19	35357436	35357437	chr19:35357437:G:A	rs12459138	G	A	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr19	35357955	35357956	chr19:35357956:G:A	rs60182696	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr19	35357964	35357965	chr19:35357965:G:A	rs12608878	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr19	35434711	35434712	chr19:35434712:C:T	rs115159567	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr19	35434712	35434713	chr19:35434713:G:A	rs116710914	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr19	35777568	35777569	chr19:35777569:G:A	rs12982672	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr19	36052510	36052511	chr19:36052511:T:G	rs7250448	T	G	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr19	37128664	37128665	chr19:37128665:A:T	rs61745776	A	T	A	Sox3.mouse_HMG_1	5	1	+	1.4046409861788327	-5.503814047917577	AAACCATATCAATGTAA
chr19	37858683	37858684	chr19:37858684:C:T	rs8100684	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr19	38139519	38139520	chr19:38139520:G:A	rs8111180	G	A	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr19	38230115	38230116	chr19:38230116:G:C	rs143944138	G	C	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr19	38250284	38250285	chr19:38250285:C:T	rs12981216	C	T	C	Sox3.mouse_HMG_1	13	1	-	5.093925388932165	-1.0141804010937516	AAAAAATTATTTTGTTT
chr19	38262984	38262985	chr19:38262985:T:C	rs7250689	T	C	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr19	38506682	38506683	chr19:38506683:T:C	rs2915957	T	C	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr19	38619141	38619142	chr19:38619142:C:T	rs149561809	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr19	38619143	38619144	chr19:38619144:A:G	rs2232993	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr19	38775511	38775512	chr19:38775512:A:G	rs77325600	A	G	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr19	38775553	38775554	chr19:38775554:G:A	rs12611426	G	A	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr19	38804255	38804256	chr19:38804256:G:A	rs73040156	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr19	39000904	39000905	chr19:39000905:A:T	rs2081994	A	T	T	Sox3.mouse_HMG_1	16	1	-	4.969224977971963	3.569541892493743	CAACAATAAAATACTTT
chr19	39000917	39000918	chr19:39000918:G:A	rs2081995	G	A	A	Sox3.mouse_HMG_1	3	1	-	4.969224977971963	-1.0135511401623578	CAACAATAAAATACTTT
chr19	39033167	39033168	chr19:39033168:C:G	rs184576548	C	G	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr19	39033197	39033198	chr19:39033198:T:G	chr19:39033198:T:G	T	G	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr19	39627865	39627866	chr19:39627866:C:T	chr19:39627866:C:T	C	T	-	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr19	39627896	39627897	chr19:39627897:A:G	rs188550117	A	G	-	Sox3.mouse_HMG_1	3	1	-	4.040842878544597	10.023618996678916	AAATAATTCAACTGTTT
chr19	39679412	39679413	chr19:39679413:G:A	rs8103033	G	A	-	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr19	39728921	39728922	chr19:39728922:T:G	rs439881	T	G	-	Sox3.mouse_HMG_1	15	1	+	-0.8967185499198413	-5.463137407525876	CAGAAATGACAGTGATG
chr19	39833664	39833665	chr19:39833665:A:C	chr19:39833665:A:C	A	C	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr19	39833697	39833698	chr19:39833698:T:A	rs781410249	T	A	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr19	40085274	40085275	chr19:40085275:T:C	rs337799	T	C	C	Sox3.mouse_HMG_1	10	1	-	-0.8752725464618363	-7.783517705433176	AAACACTGCCAGTGCAA
chr19	40085301	40085302	chr19:40085302:A:G	rs337800	A	G	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr19	40119622	40119623	chr19:40119623:C:G	rs2970102	C	G	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr19	40357934	40357935	chr19:40357935:A:G	rs8110995	A	G	G	Sox3.mouse_HMG_1	1	1	+	4.183900488878821	-0.1435328545238697	AAAGAATGAAAGTGTGG
chr19	40445963	40445964	chr19:40445964:A:T	rs563054185	A	T	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr19	40462934	40462935	chr19:40462935:A:G	rs4802078	A	G	A	Sox3.mouse_HMG_1	15	1	-	3.6466967359818137	-0.6558050618136694	AGGCAATGAAATTTTTT
chr19	40705597	40705598	chr19:40705598:T:C	rs547117462	T	C	T	Sox3.mouse_HMG_1	15	1	+	-0.42546730430882096	-4.727969102104304	CAACAGTGACATCCTTT
chr19	40829893	40829894	chr19:40829894:C:T	rs74719953	C	T	c	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr19	40971348	40971349	chr19:40971349:G:T	rs2082494	G	T	T	Sox3.mouse_HMG_1	7	1	+	-0.15500292024537543	-1.6925520249875312	GGAAAAGGGCATTGTTT
chr19	41160016	41160017	chr19:41160017:G:A	rs1044586250	G	A	.	Sox3.mouse_HMG_1	13	1	+	5.606667446805054	-0.5014383432208618	GAACAATAAATTTGTAG
chr19	41374376	41374377	chr19:41374377:A:G	rs116565310	A	G	a	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr19	41380549	41380550	chr19:41380550:T:G	rs13345590	T	G	G	Sox3.mouse_HMG_1	8	1	-	1.93854333766114	0.8059828742820644	AAGCAATTAACTTGTCT
chr19	41695577	41695578	chr19:41695578:T:C	rs12461373	T	C	t	Sox3.mouse_HMG_1	6	1	+	-0.9907883412829928	-7.636879110911913	GGACAATGGCCTTGTCC
chr19	41753247	41753248	chr19:41753248:G:A	rs11878239	G	A	N	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr19	41821153	41821154	chr19:41821154:G:A	rs12979253	G	A	g	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr19	42075410	42075411	chr19:42075411:C:T	rs1299062568	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr19	42075421	42075422	chr19:42075422:C:G	rs143455202	C	G	C	Sox3.mouse_HMG_1	14	1	-	0.8240327494619939	1.1407910859952841	GGACAATTTCATTGGAA
chr19	42541910	42541911	chr19:42541911:G:C	rs73558492	G	C	C	Sox3.mouse_HMG_1	3	1	-	0.17474324916524886	-6.732291770492405	AAACGATGATTTTTTTT
chr19	42989857	42989858	chr19:42989858:C:T	rs10853761	C	T	.	Sox3.mouse_HMG_1	4	1	-	0.27145719236345356	7.0837822843406855	AAACGATGACAGTGGGT
chr19	43029786	43029787	chr19:43029787:T:G	rs12459659	T	G	.	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr19	43448285	43448286	chr19:43448286:G:A	rs79399417	G	A	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr19	43764172	43764173	chr19:43764173:C:G	rs1058	C	G	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr19	43809729	43809730	chr19:43809730:G:T	rs10406421	G	T	G	Sox3.mouse_HMG_1	11	1	+	2.176773024866228	4.304751691727109	CAACAATTCCAGTCTGG
chr19	43830076	43830077	chr19:43830077:T:C	rs73052639	T	C	T	Sox3.mouse_HMG_1	8	1	-	5.616883987404918	4.590470512394283	AAACAAAAAAAGTGTTC
chr19	43914540	43914541	chr19:43914541:T:C	rs388706	T	C	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr19	44039634	44039635	chr19:44039635:A:T	rs55958002	A	T	.	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr19	44207057	44207058	chr19:44207058:T:C	rs11879588	T	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr19	44526044	44526045	chr19:44526045:C:T	rs115766263	C	T	C	Sox3.mouse_HMG_1	16	1	-	2.8856629841298003	2.451831539408693	GAGGAATTACAGTGTTG
chr19	44526072	44526073	chr19:44526073:G:C	rs116073571	G	C	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr19	44602551	44602552	chr19:44602552:G:A	rs58289141	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr19	44633082	44633083	chr19:44633083:T:C	rs60519804	T	C	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr19	44692791	44692792	chr19:44692792:A:G	rs2965159	A	G	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr19	44692836	44692837	chr19:44692837:T:C	rs62120564	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr19	44724777	44724778	chr19:44724778:G:A	rs28448755	G	A	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr19	44912841	44912842	chr19:44912842:G:A	rs72654437	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr19	45369998	45369999	chr19:45369999:A:G	rs3916794	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr19	45403323	45403324	chr19:45403324:C:T	chr19:45403324:C:T	C	T	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr19	45431271	45431272	chr19:45431272:T:A	rs61390465	T	A	T	Sox3.mouse_HMG_1	10	1	-	-0.41782611261709846	-7.230761091784116	GAGGAAGGGCATTGTTT
chr19	45431290	45431291	chr19:45431291:T:C	rs183715065	T	C	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr19	45468387	45468388	chr19:45468388:C:A	rs1450827658	C	A	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr19	45577117	45577118	chr19:45577118:G:A	rs1079270	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr19	45635493	45635494	chr19:45635494:A:G	rs773670764	A	G	A	Sox3.mouse_HMG_1	10	1	+	-0.4362146833802283	-7.344459842351568	CAACAAGGTCATTGGAA
chr19	45704976	45704977	chr19:45704977:A:G	rs34568773	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr19	45838928	45838929	chr19:45838929:G:A	rs114489325	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr19	45838961	45838962	chr19:45838962:T:C	rs6509236	T	C	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr19	45960878	45960879	chr19:45960879:A:G	rs57398989	A	G	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr19	46078304	46078305	chr19:46078305:G:C	rs150472498	G	C	G	Sox3.mouse_HMG_1	11	1	+	0.3421714989766348	-3.5873059431228382	AAACAATGGGAGTTTCT
chr19	46131327	46131328	chr19:46131328:A:C	rs184029915	A	C	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr19	46214849	46214850	chr19:46214850:T:C	rs4803908	T	C	t	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr19	46383191	46383192	chr19:46383192:C:T	rs149374721	C	T	C	Sox3.mouse_HMG_1	13	1	-	1.7192345775832236	-4.388871212442693	AAGCATTGCGATTGTTT
chr19	46407990	46407991	chr19:46407991:T:C	chr19:46407991:T:C	T	C	T	Sox3.mouse_HMG_1	12	1	+	2.4460941967465093	-3.7603713884713423	CAAGTATGTCAGTGTTT
chr19	46443475	46443476	chr19:46443476:T:A	rs7259499	T	A	t	Sox3.mouse_HMG_1	12	1	+	2.3880382358525627	-3.2001538377805487	CAACAATCATATTATAG
chr19	46661454	46661455	chr19:46661455:G:A	rs150695561	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr19	46661462	46661463	chr19:46661463:G:C	rs182541418	G	C	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr19	46661719	46661720	chr19:46661720:T:A	chr19:46661720:T:A	T	A	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr19	46661721	46661722	chr19:46661722:C:T	chr19:46661722:C:T	C	T	C	Sox3.mouse_HMG_1	16	1	-	0.7516486178294792	0.3178171731083721	AAACAATTTCATCGGAG
chr19	46661728	46661729	chr19:46661729:G:A	rs314667	G	A	A	Sox3.mouse_HMG_1	9	1	-	0.7516486178294792	0.7159424929449096	AAACAATTTCATCGGAG
chr19	46661745	46661746	chr19:46661746:G:C	rs1426067200	G	C	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr19	46729280	46729281	chr19:46729281:C:T	rs151333260	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr19	46984971	46984972	chr19:46984972:C:T	rs16980778	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr19	47107942	47107943	chr19:47107943:A:G	rs2279476	A	G	A	Sox3.mouse_HMG_1	11	1	-	0.13483991716413446	-5.922616191796219	TAAAAATGAGATTGATT
chr19	47111731	47111732	chr19:47111732:A:C	rs371837787	A	C	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr19	47111732	47111733	chr19:47111733:C:A	rs184543894	C	A	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr19	47143453	47143454	chr19:47143454:A:C	rs375299396	A	C	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr19	47210348	47210349	chr19:47210349:G:A	rs116816520	G	A	G	Sox3.mouse_HMG_1	3	1	-	1.889584125344892	-4.0931919927894285	GAACAATTTAACTCTTG
chr19	47241680	47241681	chr19:47241681:T:C	rs35611177	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr19	47281391	47281392	chr19:47281392:T:C	rs8107528	T	C	t	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr19	47282638	47282639	chr19:47282639:A:G	rs4802337	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr19	47545257	47545258	chr19:47545258:T:C	rs56162770	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr19	47600398	47600399	chr19:47600399:T:C	chr19:47600399:T:C	T	C	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr19	47723324	47723325	chr19:47723325:A:T	rs3112493	A	T	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr19	47762968	47762969	chr19:47762969:T:C	rs4801732	T	C	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr19	47779237	47779238	chr19:47779238:C:T	rs10412896	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr19	47825481	47825482	chr19:47825482:A:T	rs17272610	A	T	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr19	48011010	48011011	chr19:48011011:C:T	rs62129070	C	T	t	Sox3.mouse_HMG_1	9	1	+	0.7563101519975255	0.7206040271129577	CAATAATGACAGTGAAG
chr19	48186310	48186311	chr19:48186311:G:T	rs1987664	G	T	g	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr19	48199587	48199588	chr19:48199588:T:G	rs7246021	T	G	T	Sox3.mouse_HMG_1	14	1	+	0.7179848035760483	-5.708664448205949	AAACAATGTCAGGTTTC
chr19	48255356	48255357	chr19:48255357:T:A	rs9676812	T	A	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr19	48351477	48351478	chr19:48351478:A:G	rs951788307	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.3011085442489136	-3.4250249330535416	CAGCAATTCCAGTCTTT
chr19	48573864	48573865	chr19:48573865:C:G	rs3760805	C	G	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr19	48873149	48873150	chr19:48873150:T:A	rs73589816	T	A	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr19	48928874	48928875	chr19:48928875:G:A	rs117753546	G	A	g	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr19	49021036	49021037	chr19:49021037:C:G	rs143151537	C	G	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr19	49223379	49223380	chr19:49223380:G:A	rs7254520	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr19	49401771	49401772	chr19:49401772:T:C	rs8105430	T	C	T	Sox3.mouse_HMG_1	2	1	-	1.191298277348857	-3.216636701631603	GGACAAAGATATTTTTT
chr19	49503284	49503285	chr19:49503285:G:A	rs80186369	G	A	g	Sox3.mouse_HMG_1	11	1	+	5.777509493277778	2.043032066232031	AAACAATGCTCGTGTGT
chr19	49897758	49897759	chr19:49897759:G:T	rs754596118	G	T	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr19	50350094	50350095	chr19:50350095:T:C	rs7248968	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr19	50597239	50597240	chr19:50597240:A:G	rs6509488	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr19	50690573	50690574	chr19:50690574:C:T	rs117782662	C	T	C	Sox3.mouse_HMG_1	3	1	+	0.16574495205504636	-5.817031166079274	TCACAATCCCAGTGTAT
chr19	50760252	50760253	chr19:50760253:T:G	rs7248759	T	G	-	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr19	50831098	50831099	chr19:50831099:T:C	rs2560935	T	C	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr19	50865717	50865718	chr19:50865718:A:G	rs10419683	A	G	a	Sox3.mouse_HMG_1	6	1	-	2.0787248235401825	-4.567365946088735	AGAAAATGACATTCTTG
chr19	51081658	51081659	chr19:51081659:G:A	rs2569491	G	A	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr19	51081693	51081694	chr19:51081694:T:C	rs35287116	T	C	t	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr19	51377086	51377087	chr19:51377087:T:G	rs12983461	T	G	t	Sox3.mouse_HMG_1	13	1	+	-0.3331702934078925	6.035949321987642	AAGCACTGTCAGTTTTT
chr19	51474151	51474152	chr19:51474152:C:T	rs10424783	C	T	t	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr19	51586552	51586553	chr19:51586553:T:C	rs10439118	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr19	51616176	51616177	chr19:51616177:G:A	rs4802829	G	A	a	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr19	51798406	51798407	chr19:51798407:A:G	rs2902888	A	G	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr19	51821840	51821841	chr19:51821841:G:C	rs763782	G	C	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr19	52530179	52530180	chr19:52530180:T:C	rs2633517	T	C	N	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr19	52691785	52691786	chr19:52691786:T:C	rs60956916	T	C	t	Sox3.mouse_HMG_1	10	1	-	-0.3731316128186356	-7.281376771789974	GAACAGTGACATTTCTT
chr19	52729600	52729601	chr19:52729601:G:C	rs1971063	G	C	g	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr19	52735277	52735278	chr19:52735278:T:C	rs905659949	T	C	t	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr19	52735756	52735757	chr19:52735757:C:G	rs8112235	C	G	c	Sox3.mouse_HMG_1	1	1	-	7.749172683034292	6.438751130175872	AGACAATTACAGTGTAG
chr19	52762122	52762123	chr19:52762123:T:G	rs12460833	T	G	t	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr19	52775547	52775548	chr19:52775548:C:G	rs76447811	C	G	c	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr19	52898506	52898507	chr19:52898507:A:G	rs11881877	A	G	a	Sox3.mouse_HMG_1	4	1	+	3.99191234024204	-2.820412751735196	AAGCATTGACATTGTAA
chr19	52961754	52961755	chr19:52961755:T:C	rs11668097	T	C	t	Sox3.mouse_HMG_1	12	1	+	0.9506408416801383	-5.255824743537713	AGACAAGGAACTTGTTT
chr19	53041836	53041837	chr19:53041837:A:G	rs4801947	A	G	a	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr19	53092076	53092077	chr19:53092077:C:T	rs10413980	C	T	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr19	53130932	53130933	chr19:53130933:C:T	rs13345496	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr19	53130933	53130934	chr19:53130934:A:G	rs140501440	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr19	53223721	53223722	chr19:53223722:C:T	rs10425196	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr19	53254368	53254369	chr19:53254369:C:G	rs8107040	C	G	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr19	53264316	53264317	chr19:53264317:C:T	rs2965265	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr19	53420645	53420646	chr19:53420646:T:G	rs138148756	T	G	t	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr19	53539813	53539814	chr19:53539814:G:A	rs7256691	G	A	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr19	53572335	53572336	chr19:53572336:A:G	rs16985046	A	G	A	Sox3.mouse_HMG_1	10	1	+	6.220096643874713	-0.6881485150966242	CAACAATGATATTAATG
chr19	53766573	53766574	chr19:53766574:C:G	rs11878578	C	G	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr19	53842013	53842014	chr19:53842014:A:C	rs116640025	A	C	A	Sox3.mouse_HMG_1	10	1	+	4.4772137479681495	-2.087441706613112	AAACAATTTCAATCTTA
chr19	53842506	53842507	chr19:53842507:A:T	rs142919166	A	T	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr19	53977701	53977702	chr19:53977702:T:C	rs58051381	T	C	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr19	53977712	53977713	chr19:53977713:T:A	rs116630514	T	A	T	Sox3.mouse_HMG_1	9	1	-	3.4634219833510076	4.881360245295539	AAACAAGGAAAGTGATG
chr19	54022109	54022110	chr19:54022110:C:T	rs12460297	C	T	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr19	54025675	54025676	chr19:54025676:C:G	rs2619223	C	G	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr19	54204381	54204382	chr19:54204382:G:A	rs36102336	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr19	54213554	54213555	chr19:54213555:C:T	rs13353327	C	T	c	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr19	54262206	54262207	chr19:54262207:T:C	rs34450379	T	C	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr19	54352553	54352554	chr19:54352554:T:C	rs730592	T	C	-	Sox3.mouse_HMG_1	6	1	+	0.9158611337441036	-5.730229635884816	AAGAAATAACAGTGTGG
chr19	54518760	54518761	chr19:54518761:C:T	rs8106327	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr19	55087127	55087128	chr19:55087128:G:A	rs1158742090	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr19	55087137	55087138	chr19:55087138:T:G	chr19:55087138:T:G	T	G	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr19	55087163	55087164	chr19:55087164:G:A	rs546766944	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr19	55121674	55121675	chr19:55121675:C:T	rs890869	C	T	T	Sox3.mouse_HMG_1	5	1	-	-0.18202782755587227	6.544105649746584	TAACAGTGTCATTGAGG
chr19	55385340	55385341	chr19:55385341:C:T	rs3810168	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr19	55550375	55550376	chr19:55550376:G:C	rs16986404	G	C	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr19	55550441	55550442	chr19:55550442:T:C	rs10414140	T	C	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr19	55876235	55876236	chr19:55876236:C:T	rs7245535	C	T	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr19	56041685	56041686	chr19:56041686:A:G	rs8109087	A	G	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr19	56076510	56076511	chr19:56076511:T:C	rs116394781	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr19	56187129	56187130	chr19:56187130:T:C	rs4488567	T	C	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr19	56244778	56244779	chr19:56244779:G:C	rs56165655	G	C	g	Sox3.mouse_HMG_1	7	1	+	-1.0031618857035716	-6.623854020628344	AAAGAAAGACATTGGTG
chr19	56465140	56465141	chr19:56465141:C:T	rs12979827	C	T	c	Sox3.mouse_HMG_1	12	1	+	0.2565831090613184	6.46304869427917	AAAGAATGCCATCGTCA
chr19	56596860	56596861	chr19:56596861:G:A	rs1548865	G	A	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr19	56619238	56619239	chr19:56619239:C:A	rs12985817	C	A	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr19	56707549	56707550	chr19:56707550:C:T	rs12462745	C	T	c	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr19	56956121	56956122	chr19:56956122:C:A	rs754622	C	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr19	56983514	56983515	chr19:56983515:G:T	rs73936731	G	T	G	Sox3.mouse_HMG_1	3	1	-	0.8619534032203122	-5.862760059643392	CGACCATGCTATTGTGG
chr19	57269751	57269752	chr19:57269752:T:C	rs1057394417	T	C	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr19	57279244	57279245	chr19:57279245:G:A	rs7247503	G	A	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr19	57334406	57334407	chr19:57334407:T:C	rs7250886	T	C	C	Sox3.mouse_HMG_1	10	1	-	4.624707169068941	-2.2835379899023986	TGACAGTTACATTGTTG
chr19	57651327	57651328	chr19:57651328:C:T	rs766788752	C	T	c	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr19	57725373	57725374	chr19:57725374:G:C	rs549900444	G	C	g	Sox3.mouse_HMG_1	8	1	-	2.223921136226596	2.3300681245950354	AAGCAATTCTCTTGTCT
chr19	57847175	57847176	chr19:57847176:G:C	rs2007552	G	C	.	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr19	58011165	58011166	chr19:58011166:G:A	rs4801246	G	A	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr19	58274717	58274718	chr19:58274718:T:C	rs431093	T	C	T	Sox3.mouse_HMG_1	11	1	+	0.6755868013648468	-5.3818693075955055	GAAGAGTGGCATTGTAT
chr19	58330572	58330573	chr19:58330573:T:C	rs60348321	T	C	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr19	58330573	58330574	chr19:58330574:C:T	rs59119314	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr2	280937	280938	chr2:280938:C:T	rs10182453	C	T	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr2	280938	280939	chr2:280939:A:G	rs7568664	A	G	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr2	305740	305741	chr2:305741:G:C	rs76056051	G	C	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr2	502022	502023	chr2:502023:C:T	rs4854316	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr2	568941	568942	chr2:568942:G:C	rs11674091	G	C	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr2	646144	646145	chr2:646145:T:C	rs11127491	T	C	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr2	646158	646159	chr2:646159:G:A	rs35941143	G	A	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr2	773256	773257	chr2:773257:G:A	rs4450634	G	A	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr2	773277	773278	chr2:773278:C:T	rs4380275	C	T	C	Sox3.mouse_HMG_1	13	1	-	1.192183964794908	-4.915921825231008	AGAGGATGACATTGTTG
chr2	835510	835511	chr2:835511:T:C	rs11127524	T	C	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr2	949239	949240	chr2:949240:G:A	rs75411887	G	A	-	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr2	1140679	1140680	chr2:1140680:G:A	rs57694894	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr2	1487346	1487347	chr2:1487347:T:C	rs116600855	T	C	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr2	1567610	1567611	chr2:1567611:G:A	rs72776302	G	A	A	Sox3.mouse_HMG_1	13	1	+	3.193899997274677	-2.914205792751239	CAACAATTACACTGGTA
chr2	1592028	1592029	chr2:1592029:G:A	rs192892779	G	A	G	Sox3.mouse_HMG_1	3	1	-	2.7706870546044295	-3.2120890635298918	AGGCAATGCTCTTGTTG
chr2	1748928	1748929	chr2:1748929:C:T	rs962284989	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr2	1757723	1757724	chr2:1757724:A:G	rs6756670	A	G	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	1843295	1843296	chr2:1843296:G:T	rs28718187	G	T	G	Sox3.mouse_HMG_1	7	1	+	0.5805355431906256	-0.9570135615515294	AAACCATGCGAGTGTTC
chr2	1954440	1954441	chr2:1954441:G:T	rs12994185	G	T	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr2	1964261	1964262	chr2:1964262:T:C	rs34160110	T	C	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr2	2320880	2320881	chr2:2320881:T:G	rs7579854	T	G	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr2	2664553	2664554	chr2:2664554:G:A	rs72773097	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr2	2808243	2808244	chr2:2808244:C:T	rs2385327	C	T	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	3099543	3099544	chr2:3099544:T:C	rs7578259	T	C	T	Sox3.mouse_HMG_1	6	1	+	3.517044954732734	-3.1290458148961857	CAACAATTGCATGGTGA
chr2	3327487	3327488	chr2:3327488:C:T	rs4854119	C	T	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr2	3333096	3333097	chr2:3333097:A:C	rs7599847	A	C	C	Sox3.mouse_HMG_1	8	1	-	3.386616003512762	3.1800237669706592	CAGGAATGTCAGTGTTG
chr2	3413449	3413450	chr2:3413450:G:A	rs4971503	G	A	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr2	3434583	3434584	chr2:3434584:G:A	rs4971498	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr2	3756606	3756607	chr2:3756607:G:A	rs75126663	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	3756655	3756656	chr2:3756656:G:A	rs10194471	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr2	3874317	3874318	chr2:3874318:A:T	rs2219111	A	T	A	Sox3.mouse_HMG_1	10	1	+	7.401987336695008	0.5890523575279942	AAATAATTTCATTGTAG
chr2	4139677	4139678	chr2:4139678:A:G	rs17316964	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr2	4281787	4281788	chr2:4281788:G:A	rs6760082	G	A	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr2	4369900	4369901	chr2:4369901:T:A	rs10432612	T	A	A	Sox3.mouse_HMG_1	5	1	-	4.138057667225424	-2.770397366870985	AAAAAATTATATTTTTA
chr2	4782951	4782952	chr2:4782952:G:A	rs10185569	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	4803641	4803642	chr2:4803642:G:T	rs7601402	G	T	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr2	5850118	5850119	chr2:5850119:G:C	rs9679218	G	C	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr2	6182414	6182415	chr2:6182415:T:A	rs6732714	T	A	T	Sox3.mouse_HMG_1	12	1	+	1.2005026204743476	-4.387689453158765	AAAGAACTTCAGTGTTG
chr2	6210069	6210070	chr2:6210070:A:G	rs67287809	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr2	6249816	6249817	chr2:6249817:C:T	rs72772327	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr2	6572417	6572418	chr2:6572418:T:G	rs10186870	T	G	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr2	6572423	6572424	chr2:6572424:A:G	rs35660926	A	G	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr2	6768016	6768017	chr2:6768017:C:T	rs76652104	C	T	C	Sox3.mouse_HMG_1	11	1	-	3.961723610259642	0.22724618321389511	ACACAATACTTGTGTTT
chr2	6999152	6999153	chr2:6999153:G:T	rs3771990	G	T	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr2	7078010	7078011	chr2:7078011:A:G	rs544630836	A	G	A	Sox3.mouse_HMG_1	14	1	-	2.7777065178428235	-3.332184397405884	ATACAATGGTGTTGTGT
chr2	7420115	7420116	chr2:7420116:A:T	rs16866222	A	T	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr2	7468356	7468357	chr2:7468357:A:C	rs11892431	A	C	C	Sox3.mouse_HMG_1	1	1	+	1.8887511267904906	-3.7491037694706266	TAAAAAAAATAGTGTTT
chr2	7473224	7473225	chr2:7473225:A:T	rs12475712	A	T	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr2	7693129	7693130	chr2:7693130:C:T	rs11676467	C	T	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr2	7814109	7814110	chr2:7814110:G:A	rs117456472	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr2	7814118	7814119	chr2:7814119:C:T	rs114413075	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr2	7814133	7814134	chr2:7814134:T:C	rs79618057	T	C	T	Sox3.mouse_HMG_1	12	1	+	4.770026549130003	-1.4364390360878476	AAACTATGGCAGTGTGA
chr2	8205100	8205101	chr2:8205101:A:G	rs7577544	A	G	G	Sox3.mouse_HMG_1	14	1	-	5.086752362383706	-1.0231385528650014	ACACAATAAACTTGTTG
chr2	8209714	8209715	chr2:8209715:G:A	rs6431930	G	A	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr2	8300953	8300954	chr2:8300954:C:T	rs72781041	C	T	C	Sox3.mouse_HMG_1	9	1	+	0.22537148879528152	0.18966536391071281	AAGCATTGCCCTTGTTG
chr2	8419049	8419050	chr2:8419050:G:A	rs1017920	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr2	9217403	9217404	chr2:9217404:T:C	rs11897394	T	C	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr2	9371104	9371105	chr2:9371105:A:G	rs73150907	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr2	9388096	9388097	chr2:9388097:C:T	rs4560084	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr2	9555152	9555153	chr2:9555153:C:T	rs11893688	C	T	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr2	9972766	9972767	chr2:9972767:A:G	rs369232796	A	G	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr2	10046411	10046412	chr2:10046412:C:G	rs576350323	C	G	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr2	10072564	10072565	chr2:10072565:C:T	rs6756059	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr2	10289715	10289716	chr2:10289716:A:G	rs73914030	A	G	A	Sox3.mouse_HMG_1	16	1	-	3.5002793996190418	-0.10151726600194033	AAAATATTACAGTGTTT
chr2	10519271	10519272	chr2:10519272:G:T	rs114815705	G	T	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	10530842	10530843	chr2:10530843:C:T	rs1728159	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr2	10792080	10792081	chr2:10792081:C:A	rs1734422	C	A	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr2	10823686	10823687	chr2:10823687:A:G	rs115983125	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr2	10877369	10877370	chr2:10877370:T:G	rs7556818	T	G	G	Sox3.mouse_HMG_1	12	1	+	3.3761418833060874	-3.191986187361535	AAACTCTTATAGTGTTT
chr2	10901516	10901517	chr2:10901517:T:C	rs13400660	T	C	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr2	10904144	10904145	chr2:10904145:T:A	rs111399441	T	A	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr2	11156199	11156200	chr2:11156200:G:T	rs138521026	G	T	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr2	11306424	11306425	chr2:11306425:C:T	rs4669708	C	T	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr2	11497565	11497566	chr2:11497566:C:T	rs140521060	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr2	11710666	11710667	chr2:11710667:T:C	rs998251959	T	C	T	Sox3.mouse_HMG_1	4	1	-	3.1359790795296982	-3.676346012447537	TAACAATAAAATACTTA
chr2	11713836	11713837	chr2:11713837:C:T	rs62113260	C	T	C	Sox3.mouse_HMG_1	7	1	-	1.9306345538260503	1.4345642340487395	TAACAACGACATTCTAT
chr2	11713837	11713838	chr2:11713838:G:A	rs4640359	G	A	G	Sox3.mouse_HMG_1	6	1	-	1.9306345538260503	8.576725323454971	TAACAACGACATTCTAT
chr2	11713861	11713862	chr2:11713862:A:T	rs12465630	A	T	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	11809330	11809331	chr2:11809331:G:C	rs59208217	G	C	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr2	11938299	11938300	chr2:11938300:C:T	rs6742751	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr2	12320418	12320419	chr2:12320419:G:T	rs10495598	G	T	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr2	12458270	12458271	chr2:12458271:T:C	rs6432294	T	C	T	Sox3.mouse_HMG_1	12	1	+	4.187720492212579	-2.018745093005273	CAGCAATAGCAGTTTTT
chr2	13512298	13512299	chr2:13512299:T:C	rs12998776	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	14451668	14451669	chr2:14451669:T:C	rs1356175	T	C	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr2	14616089	14616090	chr2:14616090:C:T	rs76350932	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr2	15182452	15182453	chr2:15182453:G:A	rs6730450	G	A	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr2	15458336	15458337	chr2:15458337:T:G	rs7593184	T	G	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr2	15521690	15521691	chr2:15521691:G:C	rs4668917	G	C	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr2	16017681	16017682	chr2:16017682:C:T	rs12472778	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr2	16130024	16130025	chr2:16130025:T:A	rs141026745	T	A	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr2	16198479	16198480	chr2:16198480:G:T	rs75866448	G	T	G	Sox3.mouse_HMG_1	7	1	+	1.5378999103925748	0.0003508056504199497	GAATAATGATTTTGTAG
chr2	16731063	16731064	chr2:16731064:C:T	rs191008053	C	T	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr2	17429399	17429400	chr2:17429400:A:G	rs1401706	A	G	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr2	17592878	17592879	chr2:17592879:C:T	rs1033300	C	T	C	Sox3.mouse_HMG_1	16	1	-	1.9461559906745725	1.5123245459534653	AAACAATACCACTGCAG
chr2	17592885	17592886	chr2:17592886:G:A	rs1033299	G	A	A	Sox3.mouse_HMG_1	9	1	-	1.9461559906745725	1.9104498657900029	AAACAATACCACTGCAG
chr2	19538716	19538717	chr2:19538717:A:G	chr2:19538717:A:G	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.9036937028214256	-2.8224397744810297	CAAGAATGATATTTTTA
chr2	19575429	19575430	chr2:19575430:G:A	rs1344649	G	A	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr2	19912151	19912152	chr2:19912152:T:C	rs10197681	T	C	T	Sox3.mouse_HMG_1	10	1	-	3.4884971434965992	-3.41974801547474	TAACACTGTTAGTGTAA
chr2	20163904	20163905	chr2:20163905:C:T	rs35135293	C	T	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr2	20193288	20193289	chr2:20193289:A:G	rs74591651	A	G	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr2	20209997	20209998	chr2:20209998:A:G	rs3771249	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.173400261382244	-2.472690508246676	GACCAATGTCAGTGATT
chr2	20245877	20245878	chr2:20245878:T:C	rs2110410	T	C	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr2	20291822	20291823	chr2:20291823:T:C	rs3821218	T	C	T	Sox3.mouse_HMG_1	11	1	+	1.1373121096383954	-4.920143999321959	AAGAAAGGGCATTGTTT
chr2	20291831	20291832	chr2:20291832:G:A	rs3732161	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr2	20352363	20352364	chr2:20352364:C:T	rs73218122	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr2	20401046	20401047	chr2:20401047:G:C	rs343145	G	C	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr2	20536603	20536604	chr2:20536604:A:T	rs13382310	A	T	a	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr2	20579869	20579870	chr2:20579870:C:T	rs17718362	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr2	20596586	20596587	chr2:20596587:T:C	rs1466200	T	C	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr2	20727829	20727830	chr2:20727830:T:C	rs4971544	T	C	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr2	20746090	20746091	chr2:20746091:G:T	rs112384889	G	T	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr2	21106030	21106031	chr2:21106031:C:T	rs11124434	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr2	21118248	21118249	chr2:21118249:G:A	rs990740	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr2	21467941	21467942	chr2:21467942:T:C	rs13424136	T	C	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr2	22301391	22301392	chr2:22301392:T:C	rs73919368	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr2	23220886	23220887	chr2:23220887:T:A	rs11678560	T	A	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr2	23453076	23453077	chr2:23453077:T:G	rs182756130	T	G	T	Sox3.mouse_HMG_1	14	1	+	1.5207217544693354	-4.905927497312661	GAACAAGAACTGTGTTG
chr2	23637345	23637346	chr2:23637346:C:A	rs2288698	C	A	C	Sox3.mouse_HMG_1	8	1	-	10.741400529672495	10.947992766214595	GAACAATAGCATGGTTT
chr2	23637367	23637368	chr2:23637368:G:A	rs75133321	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr2	23803625	23803626	chr2:23803626:C:A	rs74633660	C	A	C	Sox3.mouse_HMG_1	13	1	-	1.9650316312815168	-4.404087984114018	GAAAAATGGCAGAGTTA
chr2	23824934	23824935	chr2:23824935:C:T	rs72782137	C	T	C	Sox3.mouse_HMG_1	8	1	+	2.1112888390309568	2.424028063941501	AAACAATACCAGGTTTA
chr2	24814172	24814173	chr2:24814173:G:A	rs1003064	G	A	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr2	25087285	25087286	chr2:25087286:G:T	rs512419	G	T	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr2	25089401	25089402	chr2:25089402:A:G	rs13413904	A	G	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr2	25209880	25209881	chr2:25209881:A:G	rs35692468	A	G	A	Sox3.mouse_HMG_1	1	1	+	4.668140597703214	0.34070725430052134	CAACAATTTCACTGTGG
chr2	25669533	25669534	chr2:25669534:T:G	rs6738958	T	G	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	26538350	26538351	chr2:26538351:G:A	rs11687195	G	A	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr2	26670383	26670384	chr2:26670384:C:T	rs80271190	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	27142746	27142747	chr2:27142747:A:G	rs1659677	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr2	27219313	27219314	chr2:27219314:C:T	rs143213188	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr2	27518369	27518370	chr2:27518370:T:C	rs780094	T	C	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr2	27651464	27651465	chr2:27651465:A:C	rs10201652	A	C	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	27796307	27796308	chr2:27796308:G:A	rs4666014	G	A	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr2	28023973	28023974	chr2:28023974:G:A	rs62140396	G	A	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr2	28096266	28096267	chr2:28096267:A:G	rs3863	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr2	28161166	28161167	chr2:28161167:G:T	rs147756373	G	T	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	28239267	28239268	chr2:28239268:G:A	rs17006629	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr2	28287580	28287581	chr2:28287581:A:G	rs144821775	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr2	28997432	28997433	chr2:28997433:C:T	rs74444058	C	T	C	Sox3.mouse_HMG_1	16	1	-	2.026754001136407	1.5929225564153	AAGCAATGACAGTGCGG
chr2	29068022	29068023	chr2:29068023:G:A	rs55861973	G	A	G	Sox3.mouse_HMG_1	7	1	+	3.583116315921475	3.0870459961441634	TTAAAATGTTAGTGTTT
chr2	29443320	29443321	chr2:29443321:T:C	rs11678326	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.369041184534851	-4.357092292767605	ATGCAATGGAACTGTTT
chr2	29450740	29450741	chr2:29450741:T:C	rs11127225	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr2	29724368	29724369	chr2:29724369:A:G	rs2541194	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr2	29952074	29952075	chr2:29952075:T:A	rs13397435	T	A	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	30287577	30287578	chr2:30287578:T:C	rs6733372	T	C	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr2	30312395	30312396	chr2:30312396:G:A	rs35303420	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	30660344	30660345	chr2:30660345:A:G	rs1447191	A	G	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr2	30948342	30948343	chr2:30948343:A:G	rs889898	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr2	31125523	31125524	chr2:31125524:A:G	rs2216832	A	G	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	31128014	31128015	chr2:31128015:T:C	rs6706257	T	C	C	Sox3.mouse_HMG_1	16	1	-	3.520536857751634	3.954368302472741	AAACAATAAAGTTGGTA
chr2	31319782	31319783	chr2:31319783:G:A	rs900536895	G	A	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr2	32040154	32040155	chr2:32040155:G:A	chr2:32040155:G:A	G	A	.	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr2	32696629	32696630	chr2:32696630:T:G	rs10184751	T	G	T	Sox3.mouse_HMG_1	10	1	-	3.5725282421037248	-2.9921272124775378	AAACAACTCAAATGTTT
chr2	32812149	32812150	chr2:32812150:G:A	rs927088	G	A	A	Sox3.mouse_HMG_1	11	1	-	5.617986008794328	11.67544211775468	AAACAATGAAACTGCTG
chr2	32812176	32812177	chr2:32812177:C:G	rs927089	C	G	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr2	32904477	32904478	chr2:32904478:A:C	rs1869824	A	C	A	Sox3.mouse_HMG_1	8	1	-	4.652140041756413	4.445547805214311	CAACAATATTACAGTTG
chr2	32927010	32927011	chr2:32927011:T:C	rs76617644	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.2985378060913977	-5.4275956712110585	GAACAATGCCTTTGACT
chr2	32977444	32977445	chr2:32977445:G:A	rs79599302	G	A	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr2	32977447	32977448	chr2:32977448:G:T	rs72791709	G	T	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr2	33251064	33251065	chr2:33251065:A:G	rs78270585	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr2	33298875	33298876	chr2:33298876:G:T	rs78692521	G	T	T	Sox3.mouse_HMG_1	7	1	+	4.8346149387304465	3.297065833988291	AAACTATGTCAGTATTT
chr2	33412276	33412277	chr2:33412277:A:G	rs142760577	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.228631069684508	-1.8288250392758447	AATAAATAAAATTGTTA
chr2	33442824	33442825	chr2:33442825:G:A	rs116159310	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr2	33442826	33442827	chr2:33442827:G:A	rs960430853	G	A	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr2	33442870	33442871	chr2:33442871:G:C	rs62147114	G	C	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr2	33462855	33462856	chr2:33462856:T:G	rs7569627	T	G	T	Sox3.mouse_HMG_1	1	1	-	1.742057054207104	-3.895797842054006	AAGCATTAGTATAGTTT
chr2	33811359	33811360	chr2:33811360:G:A	rs1522581	G	A	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	33822029	33822030	chr2:33822030:A:G	rs77075221	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr2	33895725	33895726	chr2:33895726:T:C	rs7575904	T	C	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr2	34210436	34210437	chr2:34210437:C:T	rs150404586	C	T	C	Sox3.mouse_HMG_1	15	1	-	1.850713047803929	2.9202882836174933	TATCAATGACAATGTGT
chr2	34326181	34326182	chr2:34326182:A:G	rs7558952	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr2	34667233	34667234	chr2:34667234:T:G	rs4670388	T	G	T	Sox3.mouse_HMG_1	9	1	-	4.364614387038928	5.818258773868028	GAACAAGGTAATTGATT
chr2	34667249	34667250	chr2:34667250:A:C	rs1527597	A	C	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr2	34726719	34726720	chr2:34726720:G:A	rs62163916	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr2	35507586	35507587	chr2:35507587:A:G	rs4567910	A	G	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr2	35574877	35574878	chr2:35574878:A:T	rs10195390	A	T	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr2	35707611	35707612	chr2:35707612:C:T	rs11681221	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr2	35708707	35708708	chr2:35708708:A:G	rs6744761	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr2	36525978	36525979	chr2:36525979:T:G	rs3821153	T	G	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr2	36569994	36569995	chr2:36569995:C:T	rs848631	C	T	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr2	36697519	36697520	chr2:36697520:A:C	rs12989101	A	C	A	Sox3.mouse_HMG_1	6	1	-	2.556164102126158	-4.352290931970254	AAACACTTTAAGTGTAA
chr2	36712829	36712830	chr2:36712830:G:A	rs7584029	G	A	g	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr2	37473119	37473120	chr2:37473120:A:G	rs6706731	A	G	G	Sox3.mouse_HMG_1	8	1	+	6.075590243852182	5.049176768841546	AAAAAAAAACATTGTTT
chr2	37730595	37730596	chr2:37730596:G:A	rs529362073	G	A	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr2	37768583	37768584	chr2:37768584:C:A	chr2:37768584:C:A	C	A	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr2	37768583	37768584	chr2:37768584:C:T	rs12615742	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr2	37912366	37912367	chr2:37912367:G:C	rs78148253	G	C	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr2	37916877	37916878	chr2:37916878:C:T	rs191786778	C	T	C	Sox3.mouse_HMG_1	3	1	+	2.643996824368219	-3.3387792937661023	TAACAATAAACCTGTTG
chr2	38095413	38095414	chr2:38095414:A:G	rs151256	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr2	38167983	38167984	chr2:38167984:C:A	rs232565	C	A	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr2	38214840	38214841	chr2:38214841:A:G	rs1871163	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr2	38214885	38214886	chr2:38214886:G:A	rs1871162	G	A	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	38497787	38497788	chr2:38497788:G:A	rs143756552	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr2	38652973	38652974	chr2:38652974:T:C	rs77362168	T	C	t	Sox3.mouse_HMG_1	5	1	-	3.812679608462046	-2.9134538688404104	AAACAAAAAAATGGTTG
chr2	38728723	38728724	chr2:38728724:G:A	rs6728394	G	A	g	Sox3.mouse_HMG_1	11	1	-	5.75786587685141	11.815321985811762	AAACAATGTTACGGTTG
chr2	38737678	38737679	chr2:38737679:C:T	rs80060039	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr2	38754779	38754780	chr2:38754780:G:C	rs12474770	G	C	C	Sox3.mouse_HMG_1	3	1	-	3.936060919526402	-2.97097410013125	AAACATTTAAATTTTTT
chr2	39302734	39302735	chr2:39302735:A:G	rs10865150	A	G	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	39500664	39500665	chr2:39500665:G:A	rs74728022	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr2	39672294	39672295	chr2:39672295:A:G	rs917964	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	39938990	39938991	chr2:39938991:C:T	rs17024636	C	T	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr2	40159973	40159974	chr2:40159974:C:G	rs445972	C	G	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr2	40161291	40161292	chr2:40161292:T:C	rs34580201	T	C	T	Sox3.mouse_HMG_1	5	1	+	2.6484876983027554	2.74379787810708	AAATATTGCTATTGTAT
chr2	40321255	40321256	chr2:40321256:G:T	rs759387	G	T	G	Sox3.mouse_HMG_1	3	1	+	6.616393436653855	7.540652338177186	AAGGAATGTAATTGTTT
chr2	40358018	40358019	chr2:40358019:T:C	rs77584700	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	40367791	40367792	chr2:40367792:C:T	rs6544333	C	T	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr2	40367797	40367798	chr2:40367798:A:G	rs11687700	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr2	40505327	40505328	chr2:40505328:T:A	rs115434183	T	A	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr2	40505716	40505717	chr2:40505717:G:A	rs4952631	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr2	40721762	40721763	chr2:40721763:G:C	rs2888699	G	C	G	Sox3.mouse_HMG_1	15	1	-	1.1360915280771544	0.8721744682666026	CAACTATGCCAGTGTCC
chr2	40886795	40886796	chr2:40886796:T:C	rs62141417	T	C	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr2	40935857	40935858	chr2:40935858:A:T	rs10168382	A	T	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr2	41061417	41061418	chr2:41061418:T:C	chr2:41061418:T:C	T	C	T	Sox3.mouse_HMG_1	1	1	-	2.9357604839666314	-1.39167285943606	AAAGAATAACATTTTAT
chr2	41329552	41329553	chr2:41329553:T:C	rs13419110	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	41443209	41443210	chr2:41443210:A:C	rs6544423	A	C	C	Sox3.mouse_HMG_1	16	1	+	1.662414853069586	-0.5396987270731768	ACACAATTGCTGTGTTA
chr2	41524941	41524942	chr2:41524942:T:C	rs10200274	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr2	41728696	41728697	chr2:41728697:T:C	rs12993026	T	C	C	Sox3.mouse_HMG_1	12	1	+	2.7868239443087637	-3.419641640909089	AAACAAAGTAAGTCTTT
chr2	41859807	41859808	chr2:41859808:G:C	rs12712812	G	C	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr2	41925826	41925827	chr2:41925827:G:A	rs4952545	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr2	42076446	42076447	chr2:42076447:A:C	rs12329065	A	C	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr2	42126617	42126618	chr2:42126618:G:C	rs10208331	G	C	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr2	42241330	42241331	chr2:42241331:A:G	rs7583046	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr2	42298167	42298168	chr2:42298168:G:A	rs6544538	G	A	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr2	42873162	42873163	chr2:42873163:A:T	rs72872273	A	T	T	Sox3.mouse_HMG_1	4	1	+	4.3667469956393	-1.9475614308645268	CAACAATGTTCATGTTG
chr2	43081865	43081866	chr2:43081866:G:A	rs774476863	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr2	43088709	43088710	chr2:43088710:C:T	rs7578467	C	T	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr2	43195181	43195182	chr2:43195182:G:A	rs12994974	G	A	G	Sox3.mouse_HMG_1	0	1	+	3.5191352803987117	4.89195194586025	GAAAAATGGAATTATTT
chr2	43278916	43278917	chr2:43278917:T:G	rs111274231	T	G	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr2	43408579	43408580	chr2:43408580:C:T	rs1015572572	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	43590106	43590107	chr2:43590107:A:G	rs78925283	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	43724731	43724732	chr2:43724732:A:G	rs919693	A	G	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr2	44268417	44268418	chr2:44268418:T:C	rs1013376003	T	C	T	Sox3.mouse_HMG_1	15	1	-	5.431472285591327	4.361897049777763	CAACAATGTAAGTGAAT
chr2	44270039	44270040	chr2:44270040:G:C	rs572303396	G	C	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr2	44435207	44435208	chr2:44435208:G:T	rs1033655605	G	T	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr2	44447500	44447501	chr2:44447501:C:T	rs73924767	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr2	44498700	44498701	chr2:44498701:C:T	rs76883991	C	T	C	Sox3.mouse_HMG_1	3	1	+	9.850464523896344	3.8676884057620216	AAACAAAGGAATTGTTG
chr2	44510506	44510507	chr2:44510507:A:G	rs73924794	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr2	44510520	44510521	chr2:44510521:A:G	rs1223163	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.1278453615711643	-3.5182454080577554	GGAAAATAGTAGTGTTG
chr2	44777533	44777534	chr2:44777534:C:A	rs372848770	C	A	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr2	44881923	44881924	chr2:44881924:A:G	rs1975288	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr2	44926996	44926997	chr2:44926997:C:T	rs6746613	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr2	44983665	44983666	chr2:44983666:C:T	rs1657854	C	T	c	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr2	44983703	44983704	chr2:44983704:C:G	rs2917758	C	G	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	45056819	45056820	chr2:45056820:G:A	rs7583949	G	A	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	45245257	45245258	chr2:45245258:T:C	rs114472057	T	C	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr2	45275503	45275504	chr2:45275504:A:G	rs71422153	A	G	A	Sox3.mouse_HMG_1	7	1	-	5.409491574433478	1.3263485442508598	AAACACTTTCAGTGTAT
chr2	45275529	45275530	chr2:45275530:G:A	rs1447098024	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr2	45344563	45344564	chr2:45344564:G:A	rs6760244	G	A	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr2	45394487	45394488	chr2:45394488:A:G	rs3770241	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr2	45715223	45715224	chr2:45715224:C:T	rs7606454	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr2	45723130	45723131	chr2:45723131:T:C	rs7577664	T	C	T	Sox3.mouse_HMG_1	10	1	-	2.928869061850925	-3.979376097120415	GAACAAATACACTGTTA
chr2	46001874	46001875	chr2:46001875:A:T	chr2:46001875:A:T	A	T	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr2	46006837	46006838	chr2:46006838:C:T	rs13398251	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr2	46016173	46016174	chr2:46016174:A:G	rs3738898	A	G	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr2	46016176	46016177	chr2:46016177:C:A	rs77652094	C	A	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr2	46118205	46118206	chr2:46118206:G:A	rs12616328	G	A	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr2	46350125	46350126	chr2:46350126:A:C	rs6544888	A	C	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr2	46496079	46496080	chr2:46496080:C:A	rs7590802	C	A	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	46535508	46535509	chr2:46535509:G:A	rs74331478	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr2	46559351	46559352	chr2:46559352:G:A	rs12712976	G	A	A	Sox3.mouse_HMG_1	13	1	+	4.133127089436823	-1.9749787005890935	TATTAATGATAGTGTTT
chr2	46615270	46615271	chr2:46615271:A:G	rs2242033	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr2	46854341	46854342	chr2:46854342:C:T	rs75058930	C	T	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr2	46875515	46875516	chr2:46875516:G:A	rs753897	G	A	A	Sox3.mouse_HMG_1	9	1	-	2.120759289646821	2.085053164762253	CAGCAATGCCACTGTAA
chr2	46967321	46967322	chr2:46967322:T:C	rs548440361	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr2	47005447	47005448	chr2:47005448:G:A	rs55839799	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	47091850	47091851	chr2:47091851:A:G	rs10181620	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr2	47282541	47282542	chr2:47282542:G:A	rs1979774	G	A	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr2	47282573	47282574	chr2:47282574:T:A	rs184890391	T	A	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr2	48114316	48114317	chr2:48114317:G:C	rs79117374	G	C	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr2	48447586	48447587	chr2:48447587:A:G	rs76953906	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr2	48482613	48482614	chr2:48482614:A:C	rs6707615	A	C	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	48527577	48527578	chr2:48527578:G:T	rs13386132	G	T	G	Sox3.mouse_HMG_1	3	1	+	2.0093519584346065	2.9336108599579376	GGAGAATGACATAGTTT
chr2	48694235	48694236	chr2:48694236:T:C	rs2293275	T	C	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr2	48754506	48754507	chr2:48754507:A:G	rs4073656	A	G	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	48906783	48906784	chr2:48906784:A:G	rs10170423	A	G	G	Sox3.mouse_HMG_1	14	1	+	4.714845535855459	3.573673632768553	AAACAATAGCAGAGATG
chr2	49043100	49043101	chr2:49043101:T:G	rs73928400	T	G	T	Sox3.mouse_HMG_1	4	1	-	4.209975841458792	-2.5153378735288143	AAAAAACAACAGTGTTT
chr2	49043107	49043108	chr2:49043108:G:A	rs56818892	G	A	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr2	49225011	49225012	chr2:49225012:G:A	rs7578571	G	A	A	Sox3.mouse_HMG_1	16	1	+	0.995168783236009	0.5613373385149019	GAAAAATGAACGTGTTG
chr2	49288123	49288124	chr2:49288124:G:A	rs12997347	G	A	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr2	49289146	49289147	chr2:49289147:C:T	rs1365861	C	T	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr2	49809669	49809670	chr2:49809670:T:G	rs11673881	T	G	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	50591957	50591958	chr2:50591958:G:A	rs184979977	G	A	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr2	51220884	51220885	chr2:51220885:A:G	rs75730354	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr2	52406313	52406314	chr2:52406314:A:T	rs75738950	A	T	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr2	52418287	52418288	chr2:52418288:A:T	rs11679719	A	T	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr2	52704993	52704994	chr2:52704994:T:C	rs6738153	T	C	T	Sox3.mouse_HMG_1	11	1	+	1.6569121081818492	-4.4005440007785035	AGAGAATGGTATTGATG
chr2	52710909	52710910	chr2:52710910:G:C	rs7573539	G	C	G	Sox3.mouse_HMG_1	0	1	-	3.3003731556512577	3.5171480025419175	CAAAAATAACAGTGTGA
chr2	53001398	53001399	chr2:53001399:G:C	rs72795321	G	C	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr2	54093637	54093638	chr2:54093638:G:C	rs13418839	G	C	G	Sox3.mouse_HMG_1	7	1	+	3.2555418498753097	-2.365150285049463	TAACAATGATATTAAAT
chr2	54093661	54093662	chr2:54093662:C:T	rs13418658	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr2	54234241	54234242	chr2:54234242:G:A	rs843666	G	A	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr2	54387391	54387392	chr2:54387392:C:A	rs147410969	C	A	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr2	54476958	54476959	chr2:54476959:A:G	rs76486999	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	54524825	54524826	chr2:54524826:A:G	rs1034942965	A	G	A	Sox3.mouse_HMG_1	14	1	-	9.04844741705699	2.938556501808282	CAAGAATAATAGTGTTT
chr2	54524833	54524834	chr2:54524834:A:C	rs6761398	A	C	C	Sox3.mouse_HMG_1	6	1	-	9.04844741705699	2.1399923829605805	CAAGAATAATAGTGTTT
chr2	54534395	54534396	chr2:54534396:C:T	rs10165490	C	T	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr2	54563151	54563152	chr2:54563152:A:G	rs184381375	A	G	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	54590315	54590316	chr2:54590316:A:T	rs10206143	A	T	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr2	54905622	54905623	chr2:54905623:A:G	rs6545456	A	G	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr2	55051093	55051094	chr2:55051094:A:G	rs185797850	A	G	A	Sox3.mouse_HMG_1	9	1	-	3.4910287378231937	3.5267348627077633	AAACAATTTTTTTCTTA
chr2	55117607	55117608	chr2:55117608:G:C	rs7574696	G	C	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr2	55145585	55145586	chr2:55145586:T:A	rs12464094	T	A	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr2	55228334	55228335	chr2:55228335:A:G	rs17046771	A	G	a	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr2	55618925	55618926	chr2:55618926:A:G	rs571745368	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr2	55618929	55618930	chr2:55618930:A:G	rs1404460700	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr2	55659466	55659467	chr2:55659467:T:C	rs782606	T	C	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr2	55659735	55659736	chr2:55659736:G:A	rs6725101	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr2	55955530	55955531	chr2:55955531:C:T	rs72811742	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	56084365	56084366	chr2:56084366:A:G	rs191230447	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr2	56370044	56370045	chr2:56370045:G:A	rs17268792	G	A	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr2	57214574	57214575	chr2:57214575:C:T	rs4390805	C	T	C	Sox3.mouse_HMG_1	8	1	+	3.46960822626935	3.7823474511798922	GACCAATGCTATTTTTA
chr2	57675264	57675265	chr2:57675265:G:A	rs820779	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr2	57746208	57746209	chr2:57746209:A:C	rs3886275	A	C	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr2	58193786	58193787	chr2:58193787:G:C	rs11125745	G	C	G	Sox3.mouse_HMG_1	3	1	-	4.581851583950427	-2.325183435707227	AAACAAACACAGTGTTG
chr2	58596634	58596635	chr2:58596635:T:C	rs7604277	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr2	58834628	58834629	chr2:58834629:T:C	rs182723954	T	C	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr2	59275767	59275768	chr2:59275768:G:C	rs2058584	G	C	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr2	59277640	59277641	chr2:59277641:A:G	rs1558596	A	G	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	59520662	59520663	chr2:59520663:T:C	rs62145417	T	C	t	Sox3.mouse_HMG_1	5	1	+	5.034687792114389	5.129997971918714	GAACATTGGCAATGTTT
chr2	59880606	59880607	chr2:59880607:A:G	rs10200982	A	G	G	Sox3.mouse_HMG_1	16	1	-	4.504648777900528	0.9028521122795459	GAACACTGTCAGTGTGT
chr2	60311473	60311474	chr2:60311474:G:A	rs6545804	G	A	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	60336176	60336177	chr2:60336177:G:A	rs1047382532	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr2	60383676	60383677	chr2:60383677:T:C	rs2540913	T	C	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr2	60734385	60734386	chr2:60734386:T:A	rs1814420	T	A	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr2	61147366	61147367	chr2:61147367:T:G	rs1729655	T	G	G	Sox3.mouse_HMG_1	6	1	+	9.237513482499114	2.329058448402705	AGACAATAATATTATTT
chr2	61476720	61476721	chr2:61476721:A:G	rs4430924	A	G	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr2	61797058	61797059	chr2:61797059:G:A	rs11125892	G	A	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr2	61855516	61855517	chr2:61855517:G:C	rs7567278	G	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr2	62325540	62325541	chr2:62325541:A:G	rs12467814	A	G	A	Sox3.mouse_HMG_1	7	1	-	1.3624915973184928	-2.7206514328641274	TAAAAATTGCCTTGTTG
chr2	62569052	62569053	chr2:62569053:A:G	rs9973385	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	63861247	63861248	chr2:63861248:G:A	rs547460031	G	A	G	Sox3.mouse_HMG_1	3	1	-	6.480871719819174	0.4980956016848552	AAACAATGAAATGGTCA
chr2	64166328	64166329	chr2:64166329:C:T	rs144151351	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr2	64197314	64197315	chr2:64197315:A:T	rs1344888	A	T	a	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr2	64223481	64223482	chr2:64223482:G:A	rs1001742656	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr2	64258330	64258331	chr2:64258331:T:G	rs2251764	T	G	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr2	64319408	64319409	chr2:64319409:C:T	rs4597511	C	T	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr2	64327436	64327437	chr2:64327437:G:C	rs7601803	G	C	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr2	64898643	64898644	chr2:64898644:T:C	rs6707916	T	C	C	Sox3.mouse_HMG_1	5	1	-	2.894394426799901	-3.831739050502551	AAACAATGCTAGTGCCC
chr2	64972774	64972775	chr2:64972775:C:G	rs111730782	C	G	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr2	65229110	65229111	chr2:65229111:G:C	rs6546137	G	C	g	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr2	65291125	65291126	chr2:65291126:A:G	rs4671652	A	G	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr2	65855516	65855517	chr2:65855517:A:G	rs13429724	A	G	A	Sox3.mouse_HMG_1	11	1	-	1.227092562350567	-4.830363546609785	AAAAAATGCCATAGTGG
chr2	65917053	65917054	chr2:65917054:T:A	rs62144103	T	A	T	Sox3.mouse_HMG_1	14	1	+	3.52039244592415	-1.7650849027709417	CTACAATAGCAGAGTTG
chr2	66306797	66306798	chr2:66306798:C:A	rs76158611	C	A	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr2	66409159	66409160	chr2:66409160:G:A	rs10165637	G	A	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr2	66522477	66522478	chr2:66522478:A:G	rs4430933	A	G	A	Sox3.mouse_HMG_1	7	1	-	3.301295032684959	-0.781847997497658	CATCAAATACATTGTTG
chr2	66542021	66542022	chr2:66542022:C:T	rs17625742	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr2	67180511	67180512	chr2:67180512:A:G	rs6744324	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.624249023467611	-1.433207085492742	GCACAATGGTATTCTTA
chr2	67222009	67222010	chr2:67222010:C:G	rs78221752	C	G	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	67269303	67269304	chr2:67269304:G:A	rs2062203	G	A	G	Sox3.mouse_HMG_1	8	1	+	5.934670576326031	6.961084051336666	GGACAATGGTATTCTTA
chr2	68122390	68122391	chr2:68122391:T:C	rs2861799	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr2	68236310	68236311	chr2:68236311:C:T	rs7584955	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr2	68436463	68436464	chr2:68436464:T:C	rs7596722	T	C	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr2	68749215	68749216	chr2:68749216:T:A	rs4854508	T	A	A	Sox3.mouse_HMG_1	2	1	-	1.2556001927422316	-4.646486543214533	TAACAAATTCAGTGTGG
chr2	68909030	68909031	chr2:68909031:T:G	rs79143619	T	G	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr2	69387540	69387541	chr2:69387541:T:C	rs149239600	T	C	T	Sox3.mouse_HMG_1	11	1	+	1.2329113361752184	-4.824544772785136	GAAGGATGGAATTGTTA
chr2	69626271	69626272	chr2:69626272:G:C	rs10192002	G	C	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr2	69739787	69739788	chr2:69739788:C:G	rs546258743	C	G	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr2	70137593	70137594	chr2:70137594:C:T	rs72900611	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr2	70247364	70247365	chr2:70247365:T:C	rs17615583	T	C	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr2	70350455	70350456	chr2:70350456:T:C	rs4852539	T	C	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr2	70368265	70368266	chr2:70368266:G:C	rs4852172	G	C	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr2	70574576	70574577	chr2:70574577:G:A	rs3915035	G	A	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr2	70607190	70607191	chr2:70607191:G:T	rs7591505	G	T	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	70620478	70620479	chr2:70620479:G:A	rs72895865	G	A	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr2	70874203	70874204	chr2:70874204:T:C	rs6546645	T	C	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr2	71119201	71119202	chr2:71119202:A:G	rs6546677	A	G	.	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr2	71609394	71609395	chr2:71609395:T:C	rs13030767	T	C	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr2	71893028	71893029	chr2:71893029:A:G	rs17007566	A	G	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr2	71967480	71967481	chr2:71967481:T:C	rs991136	T	C	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr2	72814072	72814073	chr2:72814073:T:C	rs143399109	T	C	T	Sox3.mouse_HMG_1	5	1	-	3.025240059859432	-3.7008934174430257	GTACTATGATATTGTGT
chr2	72814090	72814091	chr2:72814091:G:A	rs139010951	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr2	73588200	73588201	chr2:73588201:G:A	rs11903916	G	A	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr2	73588227	73588228	chr2:73588228:G:A	chr2:73588228:G:A	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr2	73911010	73911011	chr2:73911011:C:T	rs2463120	C	T	C	Sox3.mouse_HMG_1	11	1	+	1.530220298371427	7.587676407331779	CATCAATACCACTGTAT
chr2	73936803	73936804	chr2:73936804:G:C	rs831528	G	C	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	73968583	73968584	chr2:73968584:A:C	rs74703312	A	C	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr2	74849972	74849973	chr2:74849973:A:C	rs3771786	A	C	C	Sox3.mouse_HMG_1	0	1	+	3.0162407062464096	1.4266491938942107	AAACAAATGCAGAGTTT
chr2	75194446	75194447	chr2:75194447:G:A	rs3755469	G	A	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	75394296	75394297	chr2:75394297:A:G	rs7568808	A	G	G	Sox3.mouse_HMG_1	4	1	+	0.43468569445929445	-6.377639397517943	GGGCAATGACAGGGTTG
chr2	75469407	75469408	chr2:75469408:A:G	rs6715784	A	G	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr2	75483768	75483769	chr2:75483769:G:A	rs6723156	G	A	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr2	75483786	75483787	chr2:75483787:C:T	rs11685367	C	T	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr2	75603635	75603636	chr2:75603636:A:G	rs112030914	A	G	A	Sox3.mouse_HMG_1	10	1	+	6.709762990633374	-0.19848216833796495	GAACAATGCTACTGTAA
chr2	75960123	75960124	chr2:75960124:A:G	rs2692743	A	G	A	Sox3.mouse_HMG_1	11	1	+	5.932018319482104	9.666495746527852	GCACAATGACAATGTTA
chr2	76641074	76641075	chr2:76641075:G:A	rs185006672	G	A	G	Sox3.mouse_HMG_1	3	1	-	5.697664324584397	-0.2851117935499235	GTACAATGCTATTGCTG
chr2	76641096	76641097	chr2:76641097:A:G	rs79944402	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr2	76959012	76959013	chr2:76959013:G:A	rs746208412	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr2	77429033	77429034	chr2:77429034:C:T	rs13403846	C	T	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	77550548	77550549	chr2:77550549:T:A	rs79994672	T	A	T	Sox3.mouse_HMG_1	4	1	-	2.4367732261804016	-3.8775352003234245	GAAAAATAGAAGTGTGT
chr2	78059717	78059718	chr2:78059718:T:C	rs71422996	T	C	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr2	78550439	78550440	chr2:78550440:G:A	rs74979852	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr2	79638381	79638382	chr2:79638382:G:C	rs1367401	G	C	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr2	79960801	79960802	chr2:79960802:G:A	rs76646866	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr2	80498341	80498342	chr2:80498342:C:A	rs7604514	C	A	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr2	80958531	80958532	chr2:80958532:A:T	rs34493956	A	T	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr2	81160298	81160299	chr2:81160299:A:T	rs13002330	A	T	T	Sox3.mouse_HMG_1	11	1	-	4.556065212352244	-1.3063908815543837	TAAAAATAATATTTTTT
chr2	81658668	81658669	chr2:81658669:G:A	rs56031266	G	A	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr2	81876977	81876978	chr2:81876978:T:C	rs72923238	T	C	T	Sox3.mouse_HMG_1	2	1	-	3.085715393897856	-1.3222195850826057	CAACCAAAACATTGTTA
chr2	83007308	83007309	chr2:83007309:A:C	rs62146758	A	C	A	Sox3.mouse_HMG_1	2	1	-	4.574614623035288	6.068766380011592	TATCAATGAAATTGATG
chr2	83007908	83007909	chr2:83007909:C:T	rs62148861	C	T	C	Sox3.mouse_HMG_1	8	1	-	5.586364316664408	6.612777791675043	AAACAATAGCATAATTA
chr2	83053903	83053904	chr2:83053904:A:G	rs115918153	A	G	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr2	83826373	83826374	chr2:83826374:G:T	rs72927064	G	T	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr2	84041370	84041371	chr2:84041371:T:G	rs10210594	T	G	T	Sox3.mouse_HMG_1	7	1	+	3.600052537237384	5.13760164197954	AAAAAATTGAAATGTTT
chr2	84847779	84847780	chr2:84847780:G:A	rs56316175	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr2	85248273	85248274	chr2:85248274:C:T	rs6752527	C	T	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	85274285	85274286	chr2:85274286:C:T	rs10201489	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	85276444	85276445	chr2:85276445:A:C	rs10184690	A	C	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr2	85561429	85561430	chr2:85561430:G:T	rs776665054	G	T	G	Sox3.mouse_HMG_1	3	1	-	0.058938317509263816	-6.665775145354435	GAGCAATGGCGGTGTCT
chr2	85693205	85693206	chr2:85693206:T:C	rs2886767	T	C	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr2	85802722	85802723	chr2:85802723:A:G	rs60525968	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr2	85826688	85826689	chr2:85826689:C:G	rs34593202	C	G	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr2	85850409	85850410	chr2:85850410:C:T	rs114993002	C	T	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr2	86019491	86019492	chr2:86019492:A:T	rs76881663	A	T	A	Sox3.mouse_HMG_1	0	1	+	3.752067873477998	1.7289135481617537	AAAAAATTTTATTTTTG
chr2	86030603	86030604	chr2:86030604:A:G	rs11890563	A	G	A	Sox3.mouse_HMG_1	14	1	-	0.7480295836964806	-5.361861331552227	AAACAACCCCACTGTTT
chr2	86190369	86190370	chr2:86190370:G:A	rs76227800	G	A	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr2	86302501	86302502	chr2:86302502:A:C	rs72940175	A	C	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr2	86863445	86863446	chr2:86863446:G:A	rs754868699	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr2	87680946	87680947	chr2:87680947:G:A	rs146472401	G	A	.	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	87940919	87940920	chr2:87940920:A:C	rs115490520	A	C	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr2	88011470	88011471	chr2:88011471:C:T	rs6735537	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr2	88114940	88114941	chr2:88114941:C:T	rs574024498	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr2	88602213	88602214	chr2:88602214:C:T	rs11681299	C	T	C	Sox3.mouse_HMG_1	11	1	-	2.359593377406216	-1.3748840496395314	AGAAAATGCTAGTGTAT
chr2	88755913	88755914	chr2:88755914:T:C	rs76045548	T	C	N	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr2	88843378	88843379	chr2:88843379:A:G	rs2200334	A	G	a	Sox3.mouse_HMG_1	15	1	-	11.293744959614637	6.991243161819153	AAACAATAATAGTGATG
chr2	88859854	88859855	chr2:88859855:C:T	chr2:88859855:C:T	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr2	90382578	90382579	chr2:90382579:A:C	rs6709827	A	C	.	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	92849750	92849751	chr2:92849751:G:C	rs1266291684	G	C	.	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	94839318	94839319	chr2:94839319:G:A	rs7588397	G	A	-	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr2	96300454	96300455	chr2:96300455:G:C	rs62153041	G	C	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr2	97767429	97767430	chr2:97767430:G:C	rs2121271	G	C	G	Sox3.mouse_HMG_1	9	1	-	0.8896033358362752	-5.147040670714157	AAAGAATGCCTTTGTAG
chr2	98010994	98010995	chr2:98010995:G:A	rs62158276	G	A	G	Sox3.mouse_HMG_1	10	1	-	1.8306634264241926	1.5823839018384407	AAACAATGTTCCTGTAA
chr2	98019668	98019669	chr2:98019669:T:C	rs17025744	T	C	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	98149243	98149244	chr2:98149244:T:C	rs1178817847	T	C	T	Sox3.mouse_HMG_1	2	1	-	10.575940859828451	6.168005880847987	TAACAATAATATTATTG
chr2	98268616	98268617	chr2:98268617:A:G	chr2:98268617:A:G	A	G	a	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr2	98461577	98461578	chr2:98461578:T:C	rs144122033	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	98576185	98576186	chr2:98576186:T:C	rs10201079	T	C	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr2	98654547	98654548	chr2:98654548:C:T	rs2309433	C	T	C	Sox3.mouse_HMG_1	8	1	+	3.115169835324413	3.427909060234957	AAACAATGCCATTTACT
chr2	99084812	99084813	chr2:99084813:G:A	rs1563107	G	A	A	Sox3.mouse_HMG_1	10	1	-	1.478838908356661	1.2305593837709083	AAACAATGCTCTTGGGT
chr2	99338603	99338604	chr2:99338604:T:C	rs182308709	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr2	99390939	99390940	chr2:99390940:A:T	rs7574135	A	T	T	Sox3.mouse_HMG_1	6	1	-	5.019954430952682	-1.888500603143728	GAACCATAACAGTGTAG
chr2	99549991	99549992	chr2:99549992:A:T	rs13427251	A	T	T	Sox3.mouse_HMG_1	14	1	-	1.3053057510423376	-3.9801715976527543	AAATAATGTCCTTGTGG
chr2	99561483	99561484	chr2:99561484:C:T	rs73964163	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr2	99657430	99657431	chr2:99657431:T:G	rs6728983	T	G	G	Sox3.mouse_HMG_1	5	1	-	4.238624495493589	-2.5745203587984964	CAAAAATAAAATTGTCA
chr2	99708504	99708505	chr2:99708505:C:T	rs779068354	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr2	99729240	99729241	chr2:99729241:C:T	rs183423513	C	T	C	Sox3.mouse_HMG_1	13	1	-	6.05286803282566	-0.05523775720025614	AAACAATGCCTTCGTTT
chr2	99806393	99806394	chr2:99806394:C:T	rs72817099	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr2	100009121	100009122	chr2:100009122:G:A	rs72819165	G	A	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr2	100322870	100322871	chr2:100322871:G:A	rs12999151	G	A	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr2	100560667	100560668	chr2:100560668:T:G	rs2946595	T	G	t	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr2	100730275	100730276	chr2:100730276:G:A	rs72814918	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr2	100898305	100898306	chr2:100898306:A:C	rs191193237	A	C	a	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	100981566	100981567	chr2:100981567:G:C	rs12616700	G	C	G	Sox3.mouse_HMG_1	11	1	+	1.5890010064272033	-2.3404764356722696	AAACAATCACCGTGTCT
chr2	100981583	100981584	chr2:100981584:T:C	rs12614443	T	C	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr2	101114608	101114609	chr2:101114609:T:C	rs796054	T	C	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr2	101333736	101333737	chr2:101333737:C:T	rs10202282	C	T	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr2	101350543	101350544	chr2:101350544:A:T	rs79206709	A	T	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr2	101355869	101355870	chr2:101355870:A:G	rs6754354	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.6400921397995754	-5.086041337502879	AAACAATGCTCTTTTAG
chr2	101390064	101390065	chr2:101390065:T:C	rs11692240	T	C	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	101615164	101615165	chr2:101615165:T:C	rs4850984	T	C	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr2	101821050	101821051	chr2:101821051:A:G	rs12469922	A	G	A	Sox3.mouse_HMG_1	14	1	-	9.539764576475926	3.4298736612272185	AAACAAAACCAGTGTTT
chr2	101874289	101874290	chr2:101874290:G:C	rs7583833	G	C	G	Sox3.mouse_HMG_1	0	1	-	7.343049390926612	7.5598242378172715	CAAAAATGAAAGTGTTG
chr2	101912201	101912202	chr2:101912202:A:C	rs561876291	A	C	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	102006355	102006356	chr2:102006356:A:G	rs3755482	A	G	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr2	102142110	102142111	chr2:102142111:C:T	rs188558233	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr2	102417979	102417980	chr2:102417980:T:C	rs11465670	T	C	T	Sox3.mouse_HMG_1	7	1	-	3.9909244355769076	4.486994755354218	AAGCAAAATAAGTGTTT
chr2	102443852	102443853	chr2:102443853:A:G	rs4851584	A	G	G	Sox3.mouse_HMG_1	10	1	+	6.57221988490162	-0.33602527406971816	GAGCTATTACATTGTTT
chr2	102509524	102509525	chr2:102509525:C:T	rs4851608	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	102588269	102588270	chr2:102588270:C:A	rs7588111	C	A	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr2	102762100	102762101	chr2:102762101:T:C	rs2732839	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr2	103218466	103218467	chr2:103218467:C:T	rs9308863	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr2	104111427	104111428	chr2:104111428:G:C	rs67772867	G	C	G	Sox3.mouse_HMG_1	3	1	-	5.108199663598213	-1.7988353560594401	AAACTATGACATTGAAT
chr2	104361556	104361557	chr2:104361557:T:G	rs6746659	T	G	G	Sox3.mouse_HMG_1	11	1	+	3.5630878296699704	1.4351091628090908	GAAGAATGAAGTTGTTT
chr2	104361573	104361574	chr2:104361574:G:A	rs6756815	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr2	104408700	104408701	chr2:104408701:C:T	rs147771182	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr2	104431220	104431221	chr2:104431221:C:T	rs7575028	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr2	104431221	104431222	chr2:104431222:G:C	rs72826185	G	C	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr2	104761253	104761254	chr2:104761254:A:G	rs881911	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr2	104834628	104834629	chr2:104834629:T:C	rs78309028	T	C	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr2	105181052	105181053	chr2:105181053:T:C	rs2679853	T	C	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr2	105444195	105444196	chr2:105444196:T:C	rs146478674	T	C	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	105660888	105660889	chr2:105660889:T:C	rs6754015	T	C	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr2	105732052	105732053	chr2:105732053:G:A	rs17031659	G	A	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	105732379	105732380	chr2:105732380:A:G	rs146440214	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr2	105950680	105950681	chr2:105950681:A:G	rs112111147	A	G	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr2	105999771	105999772	chr2:105999772:A:C	rs1669533	A	C	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	105999776	105999777	chr2:105999777:C:T	rs1669532	C	T	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr2	106039260	106039261	chr2:106039261:A:G	rs13028037	A	G	A	Sox3.mouse_HMG_1	8	1	+	4.709661825046413	3.6832483500357767	AAACACTGACAGAGTTG
chr2	106561007	106561008	chr2:106561008:A:G	rs59005995	A	G	a	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr2	106643428	106643429	chr2:106643429:T:C	rs6739386	T	C	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr2	106696080	106696081	chr2:106696081:T:C	rs11124128	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr2	106812749	106812750	chr2:106812750:T:C	rs75012206	T	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr2	106839401	106839402	chr2:106839402:T:C	rs67385458	T	C	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr2	106839910	106839911	chr2:106839911:C:T	rs41505654	C	T	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr2	106956307	106956308	chr2:106956308:G:A	rs11124141	G	A	G	Sox3.mouse_HMG_1	8	1	+	1.3547862560786856	2.3811997310893216	AAAGAATGGAAGTTTTG
chr2	107528963	107528964	chr2:107528964:C:T	rs1549367	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr2	107984953	107984954	chr2:107984954:C:T	rs333240	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr2	108586648	108586649	chr2:108586649:G:T	rs3806527	G	T	G	Sox3.mouse_HMG_1	15	1	+	1.0783771047445132	5.644795962350548	CAACAATGCCAGTCTGC
chr2	108611249	108611250	chr2:108611250:A:G	rs2577602	A	G	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr2	108637679	108637680	chr2:108637680:T:C	rs112587673	T	C	t	Sox3.mouse_HMG_1	7	1	-	1.605301328365321	2.101371648142632	AAAAGATAACATTGTGT
chr2	108820719	108820720	chr2:108820720:C:A	rs56936346	C	A	A	Sox3.mouse_HMG_1	3	1	+	4.1518843899157	-2.572829072948	AAACAACAAAACTGTTA
chr2	109119341	109119342	chr2:109119342:G:C	chr2:109119342:G:C	G	C	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr2	109132846	109132847	chr2:109132847:G:A	rs6740122	G	A	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr2	109451534	109451535	chr2:109451535:T:G	rs551558452	T	G	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr2	109611975	109611976	chr2:109611976:T:C	chr2:109611976:T:C	T	C	T	Sox3.mouse_HMG_1	1	1	-	3.252140738856689	-1.0752926045460065	CAGGAATACAATTGTTG
chr2	109611990	109611991	chr2:109611991:A:G	rs28812293	A	G	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr2	109663009	109663010	chr2:109663010:C:A	rs74805476	C	A	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr2	110390772	110390773	chr2:110390773:C:T	rs1193545099	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr2	110679460	110679461	chr2:110679461:T:C	rs72942137	T	C	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr2	111179409	111179410	chr2:111179410:A:G	rs78945139	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr2	111205974	111205975	chr2:111205975:T:C	rs77014918	T	C	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr2	111206012	111206013	chr2:111206013:G:C	rs7600458	G	C	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr2	111512620	111512621	chr2:111512621:T:C	rs11686057	T	C	T	Sox3.mouse_HMG_1	4	1	+	5.3445041551507275	4.933498866666947	AAACTATGCCAGTGATT
chr2	112188212	112188213	chr2:112188213:C:T	rs550737345	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr2	112192135	112192136	chr2:112192136:G:A	rs12620553	G	A	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	112301028	112301029	chr2:112301029:G:A	rs62160168	G	A	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr2	112315184	112315185	chr2:112315185:A:T	rs6760417	A	T	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr2	112493159	112493160	chr2:112493160:G:A	rs62157498	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr2	112782599	112782600	chr2:112782600:C:T	rs1894399	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	112782627	112782628	chr2:112782628:G:T	rs1609682	G	T	T	Sox3.mouse_HMG_1	13	1	+	1.9900114955760013	-4.379108119819533	AAACAAAAGTATTGAAG
chr2	112997612	112997613	chr2:112997613:T:C	rs6542108	T	C	T	Sox3.mouse_HMG_1	11	1	+	1.8756219142001518	-4.1818341947602	GAAAAAATTCATTGTTG
chr2	113057375	113057376	chr2:113057376:A:G	rs4848313	A	G	A	Sox3.mouse_HMG_1	14	1	-	1.45276336626541	-4.657127548983297	AAACTATGACTGTGTAT
chr2	113747828	113747829	chr2:113747829:C:T	rs13393247	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr2	113826912	113826913	chr2:113826913:C:T	rs72948684	C	T	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr2	113841631	113841632	chr2:113841632:C:T	rs4571059	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	113847576	113847577	chr2:113847577:T:C	rs4849293	T	C	T	Sox3.mouse_HMG_1	6	1	+	5.260169061515671	-1.3859217081132507	AATCATTGCTATTGTTG
chr2	114027508	114027509	chr2:114027509:G:A	rs9308693	G	A	-	Sox3.mouse_HMG_1	3	1	-	2.490250762831488	-3.492525355302833	GAACAATTACAGGCTTT
chr2	114709955	114709956	chr2:114709956:T:C	rs1898132	T	C	C	Sox3.mouse_HMG_1	4	1	+	1.8516241773590245	1.4406188888752443	AAACTATGCTATGGTCT
chr2	115234662	115234663	chr2:115234663:C:T	rs59259939	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr2	116142397	116142398	chr2:116142398:A:G	rs11692927	A	G	A	Sox3.mouse_HMG_1	8	1	+	3.9907380204665843	2.9643245454559484	AAACAACAATGGTGTTT
chr2	116935733	116935734	chr2:116935734:A:G	rs150314834	A	G	A	Sox3.mouse_HMG_1	15	1	-	4.0925157851016944	-0.2099860126937892	GAACAAGAACATTTTTG
chr2	117727017	117727018	chr2:117727018:C:T	rs17498503	C	T	C	Sox3.mouse_HMG_1	3	1	+	4.091338547076219	-1.8914375710581017	CAACGATGGCATTGATA
chr2	117812696	117812697	chr2:117812697:G:A	rs17567144	G	A	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr2	118055479	118055480	chr2:118055480:T:C	rs7589590	T	C	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	118080704	118080705	chr2:118080705:A:G	rs2161830	A	G	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr2	118490412	118490413	chr2:118490413:C:G	rs11686428	C	G	-	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr2	118643349	118643350	chr2:118643350:G:T	rs503585	G	T	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr2	118948408	118948409	chr2:118948409:A:G	rs1813638	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr2	119229777	119229778	chr2:119229778:G:T	rs708672	G	T	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr2	119426935	119426936	chr2:119426936:G:A	rs141501549	G	A	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr2	119464566	119464567	chr2:119464567:C:T	rs6711482	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr2	119759960	119759961	chr2:119759961:C:T	rs1018960585	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr2	119760001	119760002	chr2:119760002:C:T	rs867439834	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	119809326	119809327	chr2:119809327:A:C	rs55800644	A	C	A	Sox3.mouse_HMG_1	13	1	+	4.084653306146989	4.084653306146989	TAACAATAATACTATTA
chr2	120230340	120230341	chr2:120230341:G:A	rs74922283	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr2	120241866	120241867	chr2:120241867:T:C	rs181640600	T	C	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr2	120265163	120265164	chr2:120265164:G:T	rs7587975	G	T	T	Sox3.mouse_HMG_1	11	1	+	12.849094176279726	14.977072843140606	AAGCAATGTCAGTGTTT
chr2	120545663	120545664	chr2:120545664:C:T	rs17389324	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr2	120640898	120640899	chr2:120640899:C:T	rs4848093	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr2	120653309	120653310	chr2:120653310:C:G	rs80281934	C	G	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr2	120885298	120885299	chr2:120885299:G:C	rs113965320	G	C	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr2	120913025	120913026	chr2:120913026:A:G	rs1992902	A	G	A	Sox3.mouse_HMG_1	2	1	+	2.670314966459159	-1.737620012521301	GAAAAATAACTGTGTTT
chr2	121092307	121092308	chr2:121092308:C:T	rs76805213	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	121810837	121810838	chr2:121810838:C:T	rs6739782	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	121816773	121816774	chr2:121816774:A:G	rs116568376	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr2	122947742	122947743	chr2:122947743:G:T	rs17008966	G	T	g	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr2	124201913	124201914	chr2:124201914:T:C	rs7558767	T	C	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr2	124836400	124836401	chr2:124836401:T:G	rs146753867	T	G	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr2	125117519	125117520	chr2:125117520:A:T	rs4289195	A	T	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr2	126369644	126369645	chr2:126369645:A:G	rs17013755	A	G	A	Sox3.mouse_HMG_1	12	1	-	10.437312752364141	4.230847167146288	GAACAATGCCAATGTTA
chr2	126692542	126692543	chr2:126692543:G:A	rs56224235	G	A	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr2	127109597	127109598	chr2:127109598:A:C	rs9653203	A	C	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr2	128356134	128356135	chr2:128356135:C:T	rs62158115	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr2	128362257	128362258	chr2:128362258:A:C	rs28616296	A	C	A	Sox3.mouse_HMG_1	2	1	+	10.157584225657953	3.7322493459366397	GAAAAATAAAATTGTTT
chr2	128426591	128426592	chr2:128426592:G:A	rs2124432	G	A	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr2	128579700	128579701	chr2:128579701:A:G	rs10496670	A	G	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr2	128607448	128607449	chr2:128607449:A:G	rs116208289	A	G	A	Sox3.mouse_HMG_1	9	1	+	1.6905546354350625	-2.892444984286269	AAACAGTGCAAGTCTTG
chr2	128633667	128633668	chr2:128633668:A:G	rs75454406	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr2	128752662	128752663	chr2:128752663:T:C	rs1316511	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr2	128801600	128801601	chr2:128801601:G:C	rs1316775	G	C	C	Sox3.mouse_HMG_1	13	1	+	3.451712530242796	-2.65639325978312	AAACAATAGTATAGCAT
chr2	128834529	128834530	chr2:128834530:T:C	rs12473873	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr2	130293901	130293902	chr2:130293902:T:G	rs938867	T	G	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr2	130386724	130386725	chr2:130386725:C:T	rs112503542	C	T	.	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr2	130802470	130802471	chr2:130802471:A:G	rs2403235	A	G	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr2	131451542	131451543	chr2:131451543:C:T	rs12478777	C	T	.	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	131518861	131518862	chr2:131518862:C:T	rs7600509	C	T	.	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr2	131714054	131714055	chr2:131714055:C:T	rs4100612	C	T	.	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr2	132122740	132122741	chr2:132122741:T:C	rs4622782	T	C	T	Sox3.mouse_HMG_1	0	1	-	1.0743482859422167	-0.2984683795193218	AAAAAATGGCTTTGTGT
chr2	132860989	132860990	chr2:132860990:G:T	rs1447546	G	T	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr2	133675455	133675456	chr2:133675456:G:A	rs573783785	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	133936335	133936336	chr2:133936336:G:T	rs13391929	G	T	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	133975276	133975277	chr2:133975277:G:A	rs12470618	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	134107624	134107625	chr2:134107625:T:C	rs1996589	T	C	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr2	134274562	134274563	chr2:134274563:C:T	rs747618	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr2	134444523	134444524	chr2:134444524:C:T	rs60373617	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr2	134819435	134819436	chr2:134819436:C:T	rs528057422	C	T	C	Sox3.mouse_HMG_1	13	1	-	3.024016425321405	-3.084089364704511	TGACAATGCTAGGGTTG
chr2	135037872	135037873	chr2:135037873:C:T	rs10167901	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr2	135925722	135925723	chr2:135925723:T:C	rs16832200	T	C	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr2	135925749	135925750	chr2:135925750:T:C	rs78168253	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	135926740	135926741	chr2:135926741:C:T	rs116190965	C	T	C	Sox3.mouse_HMG_1	0	1	-	6.337692253847987	7.710508919309525	GCACAATGTGATTGTTT
chr2	136049388	136049389	chr2:136049389:C:G	rs925966	C	G	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr2	136049425	136049426	chr2:136049426:T:C	rs80261410	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr2	136128570	136128571	chr2:136128571:C:T	rs6710778	C	T	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr2	136297810	136297811	chr2:136297811:T:C	rs4325815	T	C	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr2	136311358	136311359	chr2:136311359:C:T	rs79611659	C	T	C	Sox3.mouse_HMG_1	9	1	+	6.261626902189446	6.225920777304877	AAACAATACCATCCTTT
chr2	136874150	136874151	chr2:136874151:C:G	rs2465094	C	G	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr2	136960811	136960812	chr2:136960812:G:A	rs13033135	G	A	g	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr2	137023479	137023480	chr2:137023480:A:T	rs13411176	A	T	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	137091979	137091980	chr2:137091980:A:G	rs13015718	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr2	137208883	137208884	chr2:137208884:G:A	rs13404985	G	A	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr2	137208893	137208894	chr2:137208894:T:C	rs13396104	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr2	137354158	137354159	chr2:137354159:A:G	rs10172370	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr2	137693724	137693725	chr2:137693725:T:G	chr2:137693725:T:G	T	G	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr2	137812940	137812941	chr2:137812941:A:G	rs10204750	A	G	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr2	137948070	137948071	chr2:137948071:T:C	rs966573	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr2	137975929	137975930	chr2:137975930:G:C	rs3100699	G	C	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr2	138425642	138425643	chr2:138425643:C:G	rs75529043	C	G	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr2	139157211	139157212	chr2:139157212:A:C	rs13029794	A	C	a	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr2	139819548	139819549	chr2:139819549:G:A	rs10197954	G	A	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr2	140210738	140210739	chr2:140210739:T:C	rs1008695	T	C	T	Sox3.mouse_HMG_1	1	1	-	2.173392654227997	-2.1540406891746953	TAGCAATGATAATGTCA
chr2	140270356	140270357	chr2:140270357:A:G	rs3748865	A	G	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr2	140442082	140442083	chr2:140442083:A:T	rs1878742	A	T	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr2	140540897	140540898	chr2:140540898:A:C	rs6729619	A	C	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr2	140604652	140604653	chr2:140604653:G:T	rs493102	G	T	T	Sox3.mouse_HMG_1	8	1	-	2.2662811894963775	3.3988416528754533	GATGAATACCAGTGTTT
chr2	141322054	141322055	chr2:141322055:A:T	rs111739657	A	T	A	Sox3.mouse_HMG_1	2	1	+	6.170063909275809	0.267977173319044	TAACAGTGACATTGATT
chr2	141330623	141330624	chr2:141330624:G:T	rs111464452	G	T	G	Sox3.mouse_HMG_1	7	1	+	8.626901749040817	7.089352644298662	AAGCAATGTAATTGTAA
chr2	141506409	141506410	chr2:141506410:A:G	rs4260183	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr2	141595332	141595333	chr2:141595333:G:A	rs72855461	G	A	G	Sox3.mouse_HMG_1	9	1	-	3.4414459130957598	3.405739788211192	ACACAATTACATTGACT
chr2	141601509	141601510	chr2:141601510:C:G	rs4287717	C	G	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr2	141728831	141728832	chr2:141728832:A:G	rs2164694	A	G	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr2	141887565	141887566	chr2:141887566:A:G	rs13429414	A	G	A	Sox3.mouse_HMG_1	5	1	+	7.465462957773669	0.739329480471216	AAACAATTAAATTGAAG
chr2	141889972	141889973	chr2:141889973:C:T	rs546297728	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr2	141889974	141889975	chr2:141889975:T:C	rs7590166	T	C	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr2	142082569	142082570	chr2:142082570:C:T	rs956799	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	142803205	142803206	chr2:142803206:T:C	rs6731393	T	C	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr2	142993160	142993161	chr2:142993161:A:G	rs34965832	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	143262325	143262326	chr2:143262326:A:G	rs147469234	A	G	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr2	143435413	143435414	chr2:143435414:G:A	rs2271773	G	A	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	143480376	143480377	chr2:143480377:T:C	rs141243060	T	C	T	Sox3.mouse_HMG_1	2	1	-	6.460840548837519	2.052905569857057	ATACAATTAAAATGTTT
chr2	143511835	143511836	chr2:143511836:C:A	rs12691681	C	A	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	143513243	143513244	chr2:143513244:G:A	rs73964523	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr2	143545488	143545489	chr2:143545489:C:T	rs72990827	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr2	143759499	143759500	chr2:143759500:C:T	rs1517915	C	T	T	Sox3.mouse_HMG_1	16	1	-	0.5742362823502525	0.14040483762914535	GGAGAATGACACTGTTG
chr2	144538695	144538696	chr2:144538696:A:C	rs2052807	A	C	C	Sox3.mouse_HMG_1	9	1	-	2.929942833491818	-3.0709950481740442	AAACAATGATCTTATGT
chr2	144540755	144540756	chr2:144540756:T:G	rs17689833	T	G	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	144824534	144824535	chr2:144824535:G:A	rs12165166	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	145259003	145259004	chr2:145259004:A:G	rs17409500	A	G	A	Sox3.mouse_HMG_1	15	1	-	2.549850405347498	-1.7526513924479854	AGACAATAATATTTGTT
chr2	145497624	145497625	chr2:145497625:T:C	rs115933528	T	C	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr2	145931064	145931065	chr2:145931065:T:A	rs62170710	T	A	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr2	146019005	146019006	chr2:146019006:T:C	rs62168195	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr2	146503819	146503820	chr2:146503820:T:C	rs75295866	T	C	T	Sox3.mouse_HMG_1	8	1	-	4.1752797386037965	3.1488662635931615	GAAGTATGATATTGTTA
chr2	147182105	147182106	chr2:147182106:G:C	rs79972611	G	C	G	Sox3.mouse_HMG_1	16	1	+	2.7513367126587895	0.11539168779491993	TAATAAGTATATTGTTG
chr2	147430653	147430654	chr2:147430654:C:T	rs76689898	C	T	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr2	147525209	147525210	chr2:147525210:T:C	rs11695576	T	C	T	Sox3.mouse_HMG_1	5	1	-	4.037633564931676	-2.6884999123707805	GAACTATGTCAGTGTGG
chr2	148036160	148036161	chr2:148036161:A:T	rs12473564	A	T	A	Sox3.mouse_HMG_1	3	1	+	3.012620754094392	3.75455809882377	GAAAAATATCTTTGTTG
chr2	148593830	148593831	chr2:148593831:T:G	rs6757671	T	G	t	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr2	149103340	149103341	chr2:149103341:A:G	rs7592055	A	G	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr2	149473291	149473292	chr2:149473292:T:C	rs1196667	T	C	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	150045722	150045723	chr2:150045723:C:T	rs12616661	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr2	150157085	150157086	chr2:150157086:T:C	rs76850333	T	C	T	Sox3.mouse_HMG_1	11	1	-	6.244171998353449	9.978649425399196	GAGCAATATTAATGTTG
chr2	150374828	150374829	chr2:150374829:T:C	chr2:150374829:T:C	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	150374862	150374863	chr2:150374863:A:G	rs1348215	A	G	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr2	150526755	150526756	chr2:150526756:T:C	rs574843731	T	C	T	Sox3.mouse_HMG_1	2	1	+	4.383833192197384	3.860585048432836	GATAAATGTTATTGTTG
chr2	150716162	150716163	chr2:150716163:T:C	rs10210226	T	C	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr2	151084125	151084126	chr2:151084126:T:C	rs2062363	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.0074082650116063	-4.102482650237101	AAACAATGTACATGTAT
chr2	151302962	151302963	chr2:151302963:G:A	rs77110458	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr2	151302989	151302990	chr2:151302990:G:A	rs6723298	G	A	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr2	151851841	151851842	chr2:151851842:C:T	rs72868013	C	T	c	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr2	151931946	151931947	chr2:151931947:A:C	rs16830457	A	C	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr2	152176275	152176276	chr2:152176276:A:C	rs6740224	A	C	C	Sox3.mouse_HMG_1	5	1	+	7.135217031825674	0.32207217753358724	CAACAATTATTGTGTTG
chr2	152176297	152176298	chr2:152176298:G:C	rs577596614	G	C	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr2	152222199	152222200	chr2:152222200:A:G	rs1358385020	A	G	A	Sox3.mouse_HMG_1	11	1	+	2.88354701701574	6.618024444061487	AAACAACATCAATGTAT
chr2	152415680	152415681	chr2:152415681:A:T	rs73967990	A	T	A	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr2	152518871	152518872	chr2:152518872:C:T	rs10182254	C	T	C	Sox3.mouse_HMG_1	6	1	+	2.064392404860198	8.710483174489116	AAACAACGTCATTATGT
chr2	152549691	152549692	chr2:152549692:A:T	rs116727388	A	T	A	Sox3.mouse_HMG_1	6	1	-	1.3465207476153287	-5.5619342864810815	GCACCATGTCATTGTCT
chr2	152880555	152880556	chr2:152880556:A:C	rs17543335	A	C	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr2	153387012	153387013	chr2:153387013:C:G	rs12988319	C	G	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr2	153844466	153844467	chr2:153844467:A:C	rs9808037	A	C	A	Sox3.mouse_HMG_1	6	1	-	4.110484630661714	-2.7979704034346953	GAAGAATGATTTTGTTG
chr2	153844475	153844476	chr2:153844476:T:C	rs9808067	T	C	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr2	154760179	154760180	chr2:154760180:T:G	rs2961962	T	G	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr2	155452329	155452330	chr2:155452330:T:A	rs1023977	T	A	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr2	155609234	155609235	chr2:155609235:C:A	rs80153284	C	A	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr2	156401296	156401297	chr2:156401297:T:C	rs1053241617	T	C	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr2	156485929	156485930	chr2:156485930:G:A	rs298224	G	A	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	157160397	157160398	chr2:157160398:G:A	rs7596456	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr2	157477507	157477508	chr2:157477508:T:C	rs145203333	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	157848604	157848605	chr2:157848605:G:A	rs7563276	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr2	158202166	158202167	chr2:158202167:G:A	rs4233674	G	A	A	Sox3.mouse_HMG_1	9	1	-	6.861450511195518	6.825744386310949	GAACAATGACAATATTT
chr2	158316044	158316045	chr2:158316045:T:A	rs73968915	T	A	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr2	158461043	158461044	chr2:158461044:G:A	rs73966671	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr2	158471422	158471423	chr2:158471423:A:G	rs6711582	A	G	A	Sox3.mouse_HMG_1	8	1	+	6.955317486039993	5.928904011029356	GAACAATTAGATTGTCT
chr2	158560447	158560448	chr2:158560448:A:G	rs72936958	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr2	158886269	158886270	chr2:158886270:C:T	rs28886708	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	159449751	159449752	chr2:159449752:C:T	rs4142233	C	T	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	159735698	159735699	chr2:159735699:A:G	rs6432557	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr2	159851934	159851935	chr2:159851935:C:A	rs2556086	C	A	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr2	159856934	159856935	chr2:159856935:C:A	rs11675122	C	A	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	160037520	160037521	chr2:160037521:G:T	rs74457992	G	T	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr2	160060985	160060986	chr2:160060986:A:G	rs4664308	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr2	160267997	160267998	chr2:160267998:T:C	rs1116250	T	C	T	Sox3.mouse_HMG_1	14	1	+	1.7720216382680705	-4.337869276980637	AAACTATACAGGTGTTT
chr2	160472743	160472744	chr2:160472744:T:C	rs76253282	T	C	T	Sox3.mouse_HMG_1	14	1	+	8.233357017870748	2.1234661026220407	AAACAATATAAGTATTG
chr2	160964188	160964189	chr2:160964189:G:T	rs74610221	G	T	G	Sox3.mouse_HMG_1	13	1	+	5.37804928084928	-0.9910703345462551	CAACAATGCTAACGTTT
chr2	161946999	161947000	chr2:161947000:A:T	rs2222057	A	T	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr2	162073043	162073044	chr2:162073044:T:G	rs1861976	T	G	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	162073044	162073045	chr2:162073045:T:C	rs1861977	T	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	162093809	162093810	chr2:162093810:T:C	rs13013477	T	C	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr2	162100732	162100733	chr2:162100733:A:C	chr2:162100733:A:C	A	C	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr2	162587498	162587499	chr2:162587499:C:T	rs1385865	C	T	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr2	163056082	163056083	chr2:163056083:C:T	rs7592618	C	T	C	Sox3.mouse_HMG_1	1	1	+	3.6096699970995534	4.357185967086462	CCACAATTACAGTGTCA
chr2	163119436	163119437	chr2:163119437:G:T	rs10930088	G	T	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr2	163347101	163347102	chr2:163347102:G:A	rs2892864	G	A	A	Sox3.mouse_HMG_1	13	1	+	2.493967190162203	-3.614138599863714	AAAAAAAAAAAGTGTTT
chr2	163600481	163600482	chr2:163600482:C:T	rs34903314	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	163737443	163737444	chr2:163737444:G:T	chr2:163737444:G:T	G	T	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr2	164109612	164109613	chr2:164109613:C:T	rs140216863	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr2	164191567	164191568	chr2:164191568:C:A	rs10204551	C	A	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr2	164211815	164211816	chr2:164211816:G:C	rs12471844	G	C	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr2	164430298	164430299	chr2:164430299:G:A	rs140078049	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr2	164809071	164809072	chr2:164809072:T:G	rs11892976	T	G	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr2	164843093	164843094	chr2:164843094:C:T	rs3806544	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr2	164843368	164843369	chr2:164843369:T:C	rs355824	T	C	T	Sox3.mouse_HMG_1	12	1	+	6.838367652684924	0.6319020674670724	AAACAATAACTCTGTTT
chr2	165009721	165009722	chr2:165009722:T:G	rs6708616	T	G	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr2	165142090	165142091	chr2:165142091:C:G	rs78969510	C	G	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr2	166014143	166014144	chr2:166014144:G:C	rs10207252	G	C	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	166048969	166048970	chr2:166048970:G:A	rs994399	G	A	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr2	166184991	166184992	chr2:166184992:A:G	chr2:166184992:A:G	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	166234452	166234453	chr2:166234453:T:C	rs79519972	T	C	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr2	166996707	166996708	chr2:166996708:T:C	rs116531315	T	C	T	Sox3.mouse_HMG_1	1	1	+	8.902080165159408	8.154564195172497	ATACAATAAAATTGTAG
chr2	167135542	167135543	chr2:167135543:T:C	rs17616439	T	C	T	Sox3.mouse_HMG_1	11	1	-	1.6947193215379486	5.429196748583696	AAAAAATGGCAATGTAA
chr2	168114603	168114604	chr2:168114604:C:T	rs1813140	C	T	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr2	168114628	168114629	chr2:168114629:G:A	rs1813141	G	A	A	Sox3.mouse_HMG_1	3	1	-	9.542736100387666	3.5599599822533436	GAACCATTGCATTGTTT
chr2	168145593	168145594	chr2:168145594:A:G	rs1517328	A	G	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr2	168221251	168221252	chr2:168221252:G:A	rs772884269	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr2	168672115	168672116	chr2:168672116:G:A	rs73970096	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr2	169036812	169036813	chr2:169036813:C:A	rs143627656	C	A	C	Sox3.mouse_HMG_1	3	1	+	3.441624446040418	-3.2830890168232814	AAACTATTCCTTTGTTG
chr2	169116025	169116026	chr2:169116026:T:C	rs2389598	T	C	C	Sox3.mouse_HMG_1	14	1	+	1.415774934065344	-4.694115981183363	ACACAATCACCTTGTTG
chr2	169468936	169468937	chr2:169468937:T:C	rs74946619	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr2	169470034	169470035	chr2:169470035:C:A	rs73037933	C	A	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr2	169815955	169815956	chr2:169815956:G:C	rs115193235	G	C	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr2	169834320	169834321	chr2:169834321:T:A	rs11695966	T	A	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr2	170283151	170283152	chr2:170283152:C:T	rs12612480	C	T	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	170311440	170311441	chr2:170311441:G:A	rs10209277	G	A	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr2	170660461	170660462	chr2:170660462:C:G	rs7588364	C	G	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr2	170766136	170766137	chr2:170766137:C:A	rs56852746	C	A	A	Sox3.mouse_HMG_1	5	1	-	8.160472957384462	7.978151400590507	AAACAGTGTTATTGTAG
chr2	171317052	171317053	chr2:171317053:T:A	rs184215465	T	A	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr2	171403241	171403242	chr2:171403242:A:C	rs73022909	A	C	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr2	171515927	171515928	chr2:171515928:G:A	rs62183547	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr2	172053070	172053071	chr2:172053071:A:G	rs788168	A	G	A	Sox3.mouse_HMG_1	7	1	+	3.2371737920542154	3.7332441118315263	AATCAATAAAAGAGTTA
chr2	172079725	172079726	chr2:172079726:A:G	rs72877582	A	G	A	Sox3.mouse_HMG_1	7	1	+	3.96420011627424	4.460270436051551	AAATAAGAAAATTGTTA
chr2	172250868	172250869	chr2:172250869:A:G	rs4404238	A	G	G	Sox3.mouse_HMG_1	4	1	+	3.211969497125613	-3.6003555948516213	AAATAATATTCGTGTTG
chr2	172298851	172298852	chr2:172298852:A:G	rs13413724	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr2	172298853	172298854	chr2:172298854:G:A	rs72882644	G	A	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr2	172441002	172441003	chr2:172441003:C:T	rs7596259	C	T	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr2	172464592	172464593	chr2:172464593:G:A	rs143192235	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr2	172497027	172497028	chr2:172497028:G:A	rs772982880	G	A	G	Sox3.mouse_HMG_1	1	1	+	3.8892199119896462	8.216653255392341	AGGAAATGTTATTGTTT
chr2	172731639	172731640	chr2:172731640:A:T	rs1349494	A	T	A	Sox3.mouse_HMG_1	12	1	-	7.541361519607257	1.953169445974146	AAGCAATTTTAATGTTT
chr2	172930941	172930942	chr2:172930942:A:G	rs115925899	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.424578503332102	-4.301554973970355	AGACAATAATTTTCTTT
chr2	173049271	173049272	chr2:173049272:G:T	rs80013719	G	T	G	Sox3.mouse_HMG_1	15	1	+	2.9860949526852703	7.552513810291305	TAACAATTTTAGTCTGT
chr2	173101911	173101912	chr2:173101912:G:A	rs76353190	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr2	173210465	173210466	chr2:173210466:T:C	rs10930579	T	C	T	Sox3.mouse_HMG_1	9	1	+	6.70714147287096	6.742847597755528	AAACAAGAATACTGTTT
chr2	173229616	173229617	chr2:173229617:A:T	rs10193498	A	T	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr2	173347943	173347944	chr2:173347944:A:G	rs1560834	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr2	173359626	173359627	chr2:173359627:G:A	rs10168943	G	A	A	Sox3.mouse_HMG_1	13	1	+	2.050605428673356	-4.05750036135256	AAAAATTTTTAGTGTTT
chr2	173392945	173392946	chr2:173392946:C:T	rs67304191	C	T	C	Sox3.mouse_HMG_1	11	1	-	3.4568214504483645	-0.2776559765973825	AAACAAGGGCAGTGATA
chr2	173571639	173571640	chr2:173571640:G:A	rs7556734	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr2	173581179	173581180	chr2:173581180:A:T	rs77886437	A	T	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr2	173709337	173709338	chr2:173709338:A:G	rs7572805	A	G	G	Sox3.mouse_HMG_1	16	1	-	2.5697822308144844	-1.0320144348064977	AAGCAATAAGAGTGTGT
chr2	173719888	173719889	chr2:173719889:T:G	rs16862038	T	G	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr2	173764321	173764322	chr2:173764322:A:G	rs79824576	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr2	173867509	173867510	chr2:173867510:G:A	rs182579044	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr2	174009588	174009589	chr2:174009589:T:C	rs147358705	T	C	T	Sox3.mouse_HMG_1	7	1	-	5.192044330569297	5.688114650346607	AAACAATATGAGTGTGG
chr2	174009592	174009593	chr2:174009593:G:A	rs139948889	G	A	G	Sox3.mouse_HMG_1	3	1	-	5.192044330569297	-0.7907317875650228	AAACAATATGAGTGTGG
chr2	174050168	174050169	chr2:174050169:G:A	rs59012325	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr2	174701240	174701241	chr2:174701241:G:A	rs10930682	G	A	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr2	174798196	174798197	chr2:174798197:A:C	rs148091409	A	C	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr2	175070152	175070153	chr2:175070153:T:A	rs1153697	T	A	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	175984963	175984964	chr2:175984964:C:T	rs75727261	C	T	C	Sox3.mouse_HMG_1	0	1	-	4.9516598022983995	6.324476467759939	GAGCATTTGCATTGTTT
chr2	176013691	176013692	chr2:176013692:A:G	rs3099603	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.677487800665952	-1.9686029689629665	CAACAATGAAACTGGTT
chr2	176319357	176319358	chr2:176319358:G:A	rs73036882	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr2	176845829	176845830	chr2:176845830:G:A	rs1866132	G	A	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	176845834	176845835	chr2:176845835:T:G	rs1866133	T	G	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr2	177000208	177000209	chr2:177000209:G:A	rs6433631	G	A	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr2	177553846	177553847	chr2:177553847:A:G	rs1348850	A	G	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	177619712	177619713	chr2:177619713:A:G	rs116183267	A	G	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr2	178129107	178129108	chr2:178129108:G:A	rs77187337	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr2	178251380	178251381	chr2:178251381:C:T	rs115739852	C	T	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	178449631	178449632	chr2:178449632:G:C	rs1967327	G	C	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr2	178827777	178827778	chr2:178827778:G:T	rs58025762	G	T	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr2	179036715	179036716	chr2:179036716:T:C	rs2592579	T	C	C	Sox3.mouse_HMG_1	10	1	-	2.9093237604719655	-3.998921398499372	GAACAATGCCAGAATTG
chr2	179058957	179058958	chr2:179058958:C:T	rs6709090	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr2	179268411	179268412	chr2:179268412:T:G	rs76347893	T	G	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr2	179279375	179279376	chr2:179279376:C:A	rs10930860	C	A	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr2	179626860	179626861	chr2:179626861:T:A	rs36017881	T	A	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr2	179665199	179665200	chr2:179665200:A:G	rs3112970	A	G	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr2	179727563	179727564	chr2:179727564:A:G	rs116486951	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	180090635	180090636	chr2:180090636:T:C	rs6723904	T	C	T	Sox3.mouse_HMG_1	6	1	+	2.8642271255476808	-3.7818636440812363	AGACAGTGATATTGATG
chr2	180130547	180130548	chr2:180130548:T:C	rs10497559	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.3087071224445874	-5.417426354857871	GATGAATGCAAGTGTTT
chr2	180541087	180541088	chr2:180541088:T:C	rs35482970	T	C	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr2	180547703	180547704	chr2:180547704:C:T	rs1490885649	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr2	180905400	180905401	chr2:180905401:A:G	rs4666957	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr2	180942617	180942618	chr2:180942618:G:T	rs4666980	G	T	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	181197339	181197340	chr2:181197340:C:T	rs4233791	C	T	c	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr2	181306105	181306106	chr2:181306106:C:T	chr2:181306106:C:T	C	T	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr2	181426905	181426906	chr2:181426906:G:C	rs143947584	G	C	G	Sox3.mouse_HMG_1	11	1	+	5.780778641287167	1.8513011991876946	TGGCAATTACAGTGTTT
chr2	181443624	181443625	chr2:181443625:A:G	rs6740847	A	G	A	Sox3.mouse_HMG_1	5	1	+	7.807368627053606	1.0812351497511516	AAACAATAACATTTTGG
chr2	181576048	181576049	chr2:181576049:A:C	rs34617456	A	C	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr2	181629245	181629246	chr2:181629246:A:G	rs73041301	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr2	181771537	181771538	chr2:181771538:A:G	rs951542	A	G	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	181771573	181771574	chr2:181771574:T:C	rs9288070	T	C	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr2	181851598	181851599	chr2:181851599:G:A	rs6718469	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr2	182164884	182164885	chr2:182164885:A:G	rs1196067	A	G	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr2	182505393	182505394	chr2:182505394:G:A	rs573750927	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr2	183488726	183488727	chr2:183488727:T:C	rs1992179	T	C	T	Sox3.mouse_HMG_1	1	1	-	2.862057249211539	-1.465376094191153	CAAGAATGAAATTGGTG
chr2	183490580	183490581	chr2:183490581:G:A	rs1438018	G	A	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr2	183522577	183522578	chr2:183522578:T:C	rs72890205	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	183666198	183666199	chr2:183666199:C:A	rs75079947	C	A	C	Sox3.mouse_HMG_1	3	1	-	4.444144455454066	5.368403356977398	AAAGAATTAAAATGTTT
chr2	183869037	183869038	chr2:183869038:T:A	rs826173	T	A	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr2	184602181	184602182	chr2:184602182:A:T	rs12693381	A	T	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr2	184869976	184869977	chr2:184869977:G:C	rs13388087	G	C	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr2	184870021	184870022	chr2:184870022:T:C	rs13401381	T	C	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr2	185145993	185145994	chr2:185145994:C:T	rs1483236	C	T	T	Sox3.mouse_HMG_1	11	1	+	2.167486522264042	8.224942631224396	CAACAATTGCACTGGTA
chr2	185467078	185467079	chr2:185467079:T:A	rs2370394	T	A	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr2	185523331	185523332	chr2:185523332:G:A	rs10180772	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	185987588	185987589	chr2:185987589:C:T	rs16827364	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr2	186105342	186105343	chr2:186105343:C:T	rs147312753	C	T	C	Sox3.mouse_HMG_1	16	1	-	4.8311266006198315	4.397295155898724	AAACAATGCTTTTGGTG
chr2	186107338	186107339	chr2:186107339:G:C	rs13429778	G	C	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	186336584	186336585	chr2:186336585:G:T	rs2044683	G	T	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr2	186642058	186642059	chr2:186642059:A:G	rs3768785	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr2	186701928	186701929	chr2:186701929:T:A	rs12612335	T	A	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr2	186807227	186807228	chr2:186807228:T:C	rs4531895	T	C	C	Sox3.mouse_HMG_1	5	1	-	2.8370724089894845	-3.8890610683129703	AGACAACAATAATGTTT
chr2	187434451	187434452	chr2:187434452:C:G	rs79686003	C	G	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr2	187547301	187547302	chr2:187547302:T:A	rs58835850	T	A	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr2	187785260	187785261	chr2:187785261:A:T	rs11675835	A	T	a	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr2	188248264	188248265	chr2:188248265:A:G	rs76427030	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr2	188322572	188322573	chr2:188322573:C:T	rs12995727	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr2	188415877	188415878	chr2:188415878:C:G	rs4381754	C	G	C	Sox3.mouse_HMG_1	8	1	-	5.365336419271744	5.2591894309033025	AAACAATGGAATTAATG
chr2	188415902	188415903	chr2:188415903:A:G	rs4476318	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr2	188609053	188609054	chr2:188609054:C:T	rs6434291	C	T	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr2	188660235	188660236	chr2:188660236:C:T	rs2350903	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr2	188965669	188965670	chr2:188965670:T:G	rs35222811	T	G	T	Sox3.mouse_HMG_1	12	1	+	2.3742710190483027	-4.19385705161932	AAATAATGATATTGCCA
chr2	189105192	189105193	chr2:189105193:T:A	rs10931397	T	A	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr2	189212109	189212110	chr2:189212110:T:C	rs11678388	T	C	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	189213377	189213378	chr2:189213378:A:C	rs143842855	A	C	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr2	189217545	189217546	chr2:189217546:A:G	rs1533618	A	G	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	189379414	189379415	chr2:189379415:T:A	rs916660165	T	A	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr2	189411811	189411812	chr2:189411812:T:C	rs140415580	T	C	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr2	189480655	189480656	chr2:189480656:C:A	rs146015099	C	A	C	Sox3.mouse_HMG_1	14	1	+	3.2404695198737903	4.064883086427406	AAACAATTTCAGTTCTT
chr2	189517204	189517205	chr2:189517205:C:T	rs4417750	C	T	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	189549566	189549567	chr2:189549567:G:C	rs6434347	G	C	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr2	189825044	189825045	chr2:189825045:G:A	rs1233284	G	A	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr2	190124298	190124299	chr2:190124299:T:G	rs62186791	T	G	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr2	190407877	190407878	chr2:190407878:C:G	rs754110681	C	G	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr2	190673835	190673836	chr2:190673836:C:A	rs10931468	C	A	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr2	190726583	190726584	chr2:190726584:T:C	rs10176654	T	C	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr2	190820276	190820277	chr2:190820277:T:C	rs1882395	T	C	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr2	191253320	191253321	chr2:191253321:T:C	rs1823913	T	C	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr2	191355309	191355310	chr2:191355310:A:G	rs34303459	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr2	191526630	191526631	chr2:191526631:C:A	rs4853612	C	A	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr2	191623357	191623358	chr2:191623358:T:C	rs7565554	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	192087861	192087862	chr2:192087862:G:A	rs2356762	G	A	-	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr2	192148801	192148802	chr2:192148802:C:T	rs2356757	C	T	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr2	192148924	192148925	chr2:192148925:T:C	rs192617772	T	C	T	Sox3.mouse_HMG_1	7	1	+	2.9279026209820778	-1.1552404092005397	AAACAAATGTATTTTTA
chr2	192267108	192267109	chr2:192267109:G:T	rs11674016	G	T	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr2	192886080	192886081	chr2:192886081:C:T	rs1445542	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr2	192901735	192901736	chr2:192901736:A:T	rs12619891	A	T	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr2	193463362	193463363	chr2:193463363:G:A	rs72923898	G	A	G	Sox3.mouse_HMG_1	11	1	+	1.8900040693674383	-1.844473357678309	AAACAAAAACAGTGAAT
chr2	193751522	193751523	chr2:193751523:C:A	rs71418895	C	A	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr2	194991395	194991396	chr2:194991396:T:C	rs57251413	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr2	195319817	195319818	chr2:195319818:T:C	rs76690313	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr2	195536804	195536805	chr2:195536805:A:C	rs10171945	A	C	C	Sox3.mouse_HMG_1	6	1	-	5.061709584045152	-1.846745450051258	AAAGAATGACAGTCTTT
chr2	195634160	195634161	chr2:195634161:C:T	rs72929773	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	196161991	196161992	chr2:196161992:T:C	rs1519600	T	C	C	Sox3.mouse_HMG_1	11	1	+	8.682050189708065	2.6245940807477113	AATCAATCACATTGTTT
chr2	196225434	196225435	chr2:196225435:A:T	rs16847560	A	T	T	Sox3.mouse_HMG_1	4	1	+	3.116155631032375	-3.198152795471451	CAACAATTCTATTAATA
chr2	196239628	196239629	chr2:196239629:T:C	rs2889154	T	C	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr2	196245873	196245874	chr2:196245874:G:A	rs12615245	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr2	196903662	196903663	chr2:196903663:G:A	rs150396935	G	A	G	Sox3.mouse_HMG_1	1	1	+	1.8882860366001897	6.215719380002881	GGACAATACCATTGACA
chr2	197074207	197074208	chr2:197074208:C:T	rs73049693	C	T	C	Sox3.mouse_HMG_1	11	1	-	1.3367897033585123	-2.3976877236872354	CAACAATGCTGGTCTTG
chr2	197075889	197075890	chr2:197075890:A:C	rs137930548	A	C	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr2	197513821	197513822	chr2:197513822:A:G	rs7590697	A	G	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	197808708	197808709	chr2:197808709:G:A	chr2:197808709:G:A	G	A	G	Sox3.mouse_HMG_1	8	1	+	3.736773818595049	4.763187293605685	TAATAATTGTAATGTTT
chr2	197924288	197924289	chr2:197924289:T:C	rs12995110	T	C	-	Sox3.mouse_HMG_1	10	1	-	2.175384749786977	-4.732860409184362	GAACAAAGACATTGAAG
chr2	198017544	198017545	chr2:198017545:T:C	rs79909932	T	C	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr2	198182901	198182902	chr2:198182902:C:A	rs9789480	C	A	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr2	198317664	198317665	chr2:198317665:C:T	rs2529666	C	T	T	Sox3.mouse_HMG_1	16	1	+	1.7175845856074434	5.3193812512284255	GAACAAGAACATTCTTC
chr2	198556853	198556854	chr2:198556854:G:C	rs1378402	G	C	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr2	198914198	198914199	chr2:198914199:G:C	rs1840751	G	C	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr2	199778770	199778771	chr2:199778771:T:C	rs7578914	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr2	200224597	200224598	chr2:200224598:T:C	rs1729419	T	C	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr2	200466205	200466206	chr2:200466206:C:T	rs2118406	C	T	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr2	200479710	200479711	chr2:200479711:A:G	rs733054	A	G	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr2	200480071	200480072	chr2:200480072:G:C	rs17447905	G	C	G	Sox3.mouse_HMG_1	0	1	+	4.262972319664259	4.046197472773599	GAAAAATGTCAGTGTAA
chr2	200480082	200480083	chr2:200480083:G:T	rs75620403	G	T	G	Sox3.mouse_HMG_1	11	1	+	4.262972319664259	6.390950986525139	GAAAAATGTCAGTGTAA
chr2	200656510	200656511	chr2:200656511:C:A	rs2287013	C	A	A	Sox3.mouse_HMG_1	3	1	+	11.38127212783798	4.656558664974282	AAACAATTTTAGTGTCT
chr2	200667901	200667902	chr2:200667902:A:T	rs2715905	A	T	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr2	200673699	200673700	chr2:200673700:A:G	rs111932301	A	G	A	Sox3.mouse_HMG_1	14	1	-	3.0831803774987465	-3.0267105377499606	AAGCAATTGAAGGGTTT
chr2	200673733	200673734	chr2:200673734:C:T	rs74827976	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr2	200735718	200735719	chr2:200735719:C:T	rs6738605	C	T	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr2	200810260	200810261	chr2:200810261:A:G	rs142900857	A	G	A	Sox3.mouse_HMG_1	10	1	+	3.8664959626257565	-3.041749196345582	CAGCACTGACAGTGTTA
chr2	201072349	201072350	chr2:201072350:G:A	rs1485107759	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr2	201116119	201116120	chr2:201116120:G:A	rs75208666	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr2	201171754	201171755	chr2:201171755:G:A	rs7558475	G	A	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr2	201183399	201183400	chr2:201183400:C:T	rs11674246	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr2	201205000	201205001	chr2:201205001:G:T	rs150652282	G	T	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr2	201258411	201258412	chr2:201258412:C:T	rs529403950	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr2	201968278	201968279	chr2:201968279:G:A	rs6740993	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr2	202072560	202072561	chr2:202072561:G:A	rs871949	G	A	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr2	202091671	202091672	chr2:202091672:C:A	rs12986494	C	A	C	Sox3.mouse_HMG_1	7	1	-	5.569130079197951	4.031580974455796	AAACAATGAATTTTTTT
chr2	202318108	202318109	chr2:202318109:C:T	rs78655127	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr2	202329532	202329533	chr2:202329533:A:C	rs6435143	A	C	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	202769521	202769522	chr2:202769522:T:C	rs139674857	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr2	203938141	203938142	chr2:203938142:T:A	rs58800236	T	A	T	Sox3.mouse_HMG_1	15	1	+	2.183322995456339	-1.3135206263361319	AAATAATCCCATTGATT
chr2	204066220	204066221	chr2:204066221:A:G	rs79208898	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr2	204074048	204074049	chr2:204074049:C:G	rs74499146	C	G	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr2	204296823	204296824	chr2:204296824:T:A	rs6724362	T	A	a	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr2	204491599	204491600	chr2:204491600:T:A	rs13005161	T	A	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr2	205283789	205283790	chr2:205283790:C:G	rs1207423	C	G	C	Sox3.mouse_HMG_1	7	1	-	2.39947258751934	-3.2212195474054326	CAACAATGTGAATGTAT
chr2	205463376	205463377	chr2:205463377:C:G	rs10179556	C	G	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr2	205483243	205483244	chr2:205483244:A:T	rs10187140	A	T	A	Sox3.mouse_HMG_1	8	1	+	3.2585924350192923	2.4387711965507592	AAACATTGATGGTGTTG
chr2	205708911	205708912	chr2:205708912:C:A	rs849548	C	A	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr2	205964632	205964633	chr2:205964633:G:C	rs6748181	G	C	G	Sox3.mouse_HMG_1	14	1	+	7.54421848087202	7.8609768174053105	AAACAATAATATTGGCA
chr2	206737324	206737325	chr2:206737325:G:A	rs4675633	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr2	206836910	206836911	chr2:206836911:G:A	rs10932166	G	A	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr2	206878992	206878993	chr2:206878993:T:C	rs56409875	T	C	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr2	207110093	207110094	chr2:207110094:C:T	rs2244923	C	T	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	207150173	207150174	chr2:207150174:T:C	rs1920047	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.7350017505264566	-3.3748891647222505	GTAAAATACAATTGTTA
chr2	207216250	207216251	chr2:207216251:G:A	rs759663	G	A	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr2	207259025	207259026	chr2:207259026:C:T	chr2:207259026:C:T	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr2	207468299	207468300	chr2:207468300:T:A	rs75286181	T	A	T	Sox3.mouse_HMG_1	4	1	-	3.4154897852987074	-2.898818641205122	TGACACTAATAGTGTTG
chr2	207835874	207835875	chr2:207835875:G:T	rs4675718	G	T	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr2	207840366	207840367	chr2:207840367:C:A	rs7574706	C	A	.	Sox3.mouse_HMG_1	8	1	-	4.560971780653627	4.767564017195729	AAACAATGGTTTTTTTA
chr2	207893133	207893134	chr2:207893134:C:G	rs1023929	C	G	G	Sox3.mouse_HMG_1	12	1	+	2.0463634270509377	1.6847009416011667	AAACAAAAAAAGCGTTG
chr2	208096699	208096700	chr2:208096700:C:A	rs6713275	C	A	c	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr2	208353284	208353285	chr2:208353285:A:G	rs34904313	A	G	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr2	208465893	208465894	chr2:208465894:A:T	rs11682949	A	T	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr2	208465894	208465895	chr2:208465895:A:T	rs11682951	A	T	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr2	208957316	208957317	chr2:208957317:G:T	rs12478669	G	T	G	Sox3.mouse_HMG_1	0	1	+	7.82024322059541	7.1699055607407045	GAGCAATGATATGGTTT
chr2	209272977	209272978	chr2:209272978:A:G	rs990298	A	G	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr2	209314906	209314907	chr2:209314907:A:C	rs79069051	A	C	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr2	209523973	209523974	chr2:209523974:G:C	rs60120123	G	C	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	209527112	209527113	chr2:209527113:A:G	rs2365661	A	G	A	Sox3.mouse_HMG_1	12	1	-	2.7427050726684494	-3.4637605125494018	AGACAATTCTAATGTGT
chr2	209684453	209684454	chr2:209684454:C:A	rs3768816	C	A	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr2	209905802	209905803	chr2:209905803:C:T	rs11688226	C	T	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	209969298	209969299	chr2:209969299:A:G	rs77204504	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr2	210999547	210999548	chr2:210999548:A:C	rs192926	A	C	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	211437423	211437424	chr2:211437424:G:A	rs17803242	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	212119900	212119901	chr2:212119901:T:C	rs12465933	T	C	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr2	212283066	212283067	chr2:212283067:T:A	rs116270204	T	A	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr2	212901711	212901712	chr2:212901712:T:A	rs7584738	T	A	t	Sox3.mouse_HMG_1	12	1	+	2.5222608689001156	-3.0659312047329967	TCACCATGCTAGTGTTT
chr2	212930574	212930575	chr2:212930575:T:G	rs74652229	T	G	T	Sox3.mouse_HMG_1	6	1	+	3.9413647291676126	-2.9670903049287976	GAACATTTTCAGTGTAT
chr2	213045379	213045380	chr2:213045380:G:A	rs12622499	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr2	213175322	213175323	chr2:213175323:T:A	rs4673732	T	A	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr2	213451700	213451701	chr2:213451701:T:C	rs1030288	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr2	213886522	213886523	chr2:213886523:A:T	rs10932508	A	T	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	214103445	214103446	chr2:214103446:T:A	rs115199791	T	A	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr2	214215677	214215678	chr2:214215678:C:T	rs13028775	C	T	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr2	214627091	214627092	chr2:214627092:A:G	rs12993670	A	G	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr2	214797186	214797187	chr2:214797187:A:C	rs34377639	A	C	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr2	215078269	215078270	chr2:215078270:A:G	rs111865543	A	G	A	Sox3.mouse_HMG_1	10	1	+	2.0579933235647454	-4.850251835406594	AAACAATCCCATTCATT
chr2	215299873	215299874	chr2:215299874:A:C	rs10186051	A	C	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr2	215501243	215501244	chr2:215501244:T:C	rs80293382	T	C	t	Sox3.mouse_HMG_1	4	1	-	2.41850668314774	-4.393818408829496	ATACAATGCATTTGTAT
chr2	215773649	215773650	chr2:215773650:G:A	rs75151094	G	A	g	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr2	215773684	215773685	chr2:215773685:G:A	rs1879926	G	A	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr2	215920242	215920243	chr2:215920243:C:T	rs13407338	C	T	C	Sox3.mouse_HMG_1	13	1	-	9.937445917640824	3.829340127614907	AAACAAATTTATTGTTG
chr2	215940849	215940850	chr2:215940850:T:C	rs12472599	T	C	t	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr2	216032415	216032416	chr2:216032416:T:C	rs7600247	T	C	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr2	216057868	216057869	chr2:216057869:T:C	rs79926373	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr2	216090735	216090736	chr2:216090736:C:T	rs828921	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr2	216429270	216429271	chr2:216429271:A:G	rs2738282	A	G	a	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr2	216440756	216440757	chr2:216440757:T:A	rs2627046	T	A	T	Sox3.mouse_HMG_1	14	1	+	3.8044964836371267	-1.4809808650579652	CAACCATGGTACTGTTG
chr2	216546145	216546146	chr2:216546146:T:G	rs74693597	T	G	T	Sox3.mouse_HMG_1	0	1	-	5.246009787376416	3.6564182750242207	AAACAATGCCACTTTTA
chr2	216546522	216546523	chr2:216546523:T:C	rs922987	T	C	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr2	216546534	216546535	chr2:216546535:G:A	rs546406436	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr2	216563843	216563844	chr2:216563844:C:A	rs55949753	C	A	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr2	216563858	216563859	chr2:216563859:T:C	rs9917209	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr2	216622898	216622899	chr2:216622899:G:A	rs4674101	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr2	216717205	216717206	chr2:216717206:G:T	rs34825902	G	T	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr2	217037640	217037641	chr2:217037641:A:G	rs7421376	A	G	A	Sox3.mouse_HMG_1	2	1	+	2.88402092621269	-1.523914052767771	AAATAACTGCAGTGTTT
chr2	217077942	217077943	chr2:217077943:C:A	rs72951824	C	A	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr2	217077991	217077992	chr2:217077992:A:G	rs2372960	A	G	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr2	217275180	217275181	chr2:217275181:G:A	rs2888479	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr2	217294737	217294738	chr2:217294738:G:A	rs72959531	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr2	217358299	217358300	chr2:217358300:T:C	rs4674159	T	C	T	Sox3.mouse_HMG_1	0	1	-	6.798171463454737	5.425354797993196	ACACAATGACATTTTTA
chr2	217530421	217530422	chr2:217530422:T:C	rs1002353	T	C	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr2	217593623	217593624	chr2:217593624:A:G	rs1367186	A	G	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr2	217699465	217699466	chr2:217699466:G:A	rs73087135	G	A	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr2	217793527	217793528	chr2:217793528:C:T	rs551725718	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr2	217849962	217849963	chr2:217849963:A:C	rs3791978	A	C	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr2	218563575	218563576	chr2:218563576:T:C	rs483172	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr2	219033003	219033004	chr2:219033004:C:G	rs7572866	C	G	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr2	219277240	219277241	chr2:219277241:A:T	rs4674372	A	T	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr2	219727602	219727603	chr2:219727603:G:A	rs12694477	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	220039951	220039952	chr2:220039952:A:G	rs6436187	A	G	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr2	220062422	220062423	chr2:220062423:G:A	rs730833	G	A	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr2	220101753	220101754	chr2:220101754:T:C	rs4618039	T	C	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr2	220312203	220312204	chr2:220312204:T:C	rs7558175	T	C	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr2	220319755	220319756	chr2:220319756:G:T	rs716029	G	T	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr2	220333698	220333699	chr2:220333699:A:G	rs34044598	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.7669707717269256	-3.9591627055755296	GATCAATTCTACTGTTA
chr2	220396685	220396686	chr2:220396686:T:A	rs13389098	T	A	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	220466607	220466608	chr2:220466608:T:C	rs62187871	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	220556498	220556499	chr2:220556499:T:A	rs77196966	T	A	T	Sox3.mouse_HMG_1	2	1	-	4.633841373027872	-1.2682453629288937	AAACAATCTGAGTGTTG
chr2	220779815	220779816	chr2:220779816:G:A	rs7580960	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr2	220790199	220790200	chr2:220790200:A:G	rs11678587	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr2	220790204	220790205	chr2:220790205:T:C	rs7562441	T	C	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr2	220963100	220963101	chr2:220963101:G:A	rs1435178	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr2	221310958	221310959	chr2:221310959:C:T	rs10203169	C	T	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr2	222103722	222103723	chr2:222103723:G:A	rs2395844	G	A	A	Sox3.mouse_HMG_1	9	1	-	3.4316587864500097	3.395952661565441	AAACAAGACCAGTATTT
chr2	222239848	222239849	chr2:222239849:G:C	rs35373048	G	C	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr2	222464297	222464298	chr2:222464298:C:T	rs6708243	C	T	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr2	222652985	222652986	chr2:222652986:C:G	rs10170846	C	G	g	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr2	222879412	222879413	chr2:222879413:A:G	rs34640732	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr2	223518972	223518973	chr2:223518973:A:C	rs1921631	A	C	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr2	224042597	224042598	chr2:224042598:G:A	rs191773521	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	224042597	224042598	chr2:224042598:G:C	chr2:224042598:G:C	G	C	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	224042629	224042630	chr2:224042630:C:T	rs282254	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr2	224122827	224122828	chr2:224122828:T:A	chr2:224122828:T:A	T	A	T	Sox3.mouse_HMG_1	10	1	-	2.5820913795729457	-4.230843599594068	CAATAATAACACTGTAT
chr2	224218021	224218022	chr2:224218022:T:A	rs184603497	T	A	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	224886055	224886056	chr2:224886056:T:G	rs1408208674	T	G	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr2	224944318	224944319	chr2:224944319:G:A	rs6750683	G	A	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr2	225032645	225032646	chr2:225032646:T:C	rs281545	T	C	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr2	225949185	225949186	chr2:225949186:T:C	rs1589153	T	C	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr2	226001244	226001245	chr2:226001245:A:G	rs908719	A	G	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr2	226548946	226548947	chr2:226548947:G:T	rs56960665	G	T	G	Sox3.mouse_HMG_1	13	1	-	3.411640241574122	3.411640241574122	AGGCAATAAAATTCTTT
chr2	227133108	227133109	chr2:227133109:C:T	rs7574850	C	T	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr2	227308919	227308920	chr2:227308920:A:G	rs77964815	A	G	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr2	227366010	227366011	chr2:227366011:G:A	rs75274263	G	A	G	Sox3.mouse_HMG_1	8	1	-	4.762204245685828	5.07494347059637	GAACAATGCCATGTTTT
chr2	227388836	227388837	chr2:227388837:G:A	rs35438597	G	A	g	Sox3.mouse_HMG_1	13	1	+	7.72215706527189	1.6140512752459748	AAACAATATTCTTGTGT
chr2	227388854	227388855	chr2:227388855:A:C	rs145814862	A	C	a	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr2	227389071	227389072	chr2:227389072:C:T	rs4076131	C	T	c	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr2	227394263	227394264	chr2:227394264:T:C	rs6436686	T	C	T	Sox3.mouse_HMG_1	8	1	-	3.0707710636159202	2.0443575886052847	TAAAAATTATTTTGTTT
chr2	227632752	227632753	chr2:227632753:T:A	rs59004229	T	A	T	Sox3.mouse_HMG_1	4	1	-	1.179354682836204	-5.134953743667623	AAACAGTGCTCTTGTGT
chr2	227671459	227671460	chr2:227671460:C:T	rs62191368	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr2	227760445	227760446	chr2:227760446:C:T	rs4973309	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr2	228039316	228039317	chr2:228039317:C:T	rs6743462	C	T	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	228039913	228039914	chr2:228039914:C:T	rs7593227	C	T	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr2	228039939	228039940	chr2:228039940:C:T	rs7593234	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr2	228129900	228129901	chr2:228129901:A:G	rs13402926	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.223921136226596	-4.502212341075861	AAGCAATTCTCTTGTCT
chr2	228426065	228426066	chr2:228426066:A:G	rs7585069	A	G	A	Sox3.mouse_HMG_1	11	1	-	2.2496440230225745	-3.8078120859377784	CAAACATAAAATTGTTG
chr2	228445370	228445371	chr2:228445371:C:G	rs60799555	C	G	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	228848046	228848047	chr2:228848047:G:A	rs72983359	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr2	228884514	228884515	chr2:228884515:A:G	rs800746	A	G	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr2	229130058	229130059	chr2:229130059:C:T	rs4972888	C	T	T	Sox3.mouse_HMG_1	6	1	-	0.7240498780038829	0.7240498780038829	GAACAAGTACAGGGTTG
chr2	229130059	229130060	chr2:229130060:T:C	rs4973158	T	C	C	Sox3.mouse_HMG_1	5	1	-	0.7240498780038829	-6.002083599298573	GAACAAGTACAGGGTTG
chr2	229462312	229462313	chr2:229462313:C:A	rs2112104	C	A	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr2	229515025	229515026	chr2:229515026:T:A	rs6729009	T	A	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr2	229781049	229781050	chr2:229781050:T:C	rs114628133	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.112761622598267	-4.613371854704189	AAACAACAGCATTGGAT
chr2	229832581	229832582	chr2:229832582:A:G	rs186478256	A	G	A	Sox3.mouse_HMG_1	14	1	-	4.838069967022828	-1.2718209482258793	AGACAATGCCTGTGTTG
chr2	230179147	230179148	chr2:230179148:T:G	rs967007	T	G	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr2	230258648	230258649	chr2:230258649:T:G	rs62191186	T	G	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	230601095	230601096	chr2:230601096:T:C	rs1173175	T	C	C	Sox3.mouse_HMG_1	6	1	+	2.1027723313962214	-4.543318438232698	GCACAATGGCATGGTAT
chr2	230943517	230943518	chr2:230943518:C:T	rs4973352	C	T	C	Sox3.mouse_HMG_1	0	1	+	5.303811081814753	4.870248268850708	CAACAATGCCAGAGTAG
chr2	230964792	230964793	chr2:230964793:C:T	rs2089662	C	T	-	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr2	230973418	230973419	chr2:230973419:A:G	rs3106301	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	231128323	231128324	chr2:231128324:A:T	rs10498257	A	T	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr2	231131861	231131862	chr2:231131862:G:A	rs7565408	G	A	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	231523323	231523324	chr2:231523324:T:C	rs11673905	T	C	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr2	231661389	231661390	chr2:231661390:A:G	rs55846746	A	G	A	Sox3.mouse_HMG_1	12	1	-	6.505899108554882	0.29943352333702977	AAAGAATGGTAGTGTTC
chr2	231661416	231661417	chr2:231661417:T:C	rs553259757	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr2	232593077	232593078	chr2:232593078:G:A	rs534909998	G	A	G	Sox3.mouse_HMG_1	14	1	-	0.2511837382164865	6.361074653465194	GAACACTTGCAGTGCTG
chr2	232775003	232775004	chr2:232775004:A:G	rs1446307	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	232777519	232777520	chr2:232777520:T:A	rs2289914	T	A	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	232913148	232913149	chr2:232913149:C:T	rs778364	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr2	233091012	233091013	chr2:233091013:T:C	rs4335931	T	C	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr2	233297793	233297794	chr2:233297794:T:C	rs73998351	T	C	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr2	233324844	233324845	chr2:233324845:G:A	rs10168355	G	A	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr2	233374641	233374642	chr2:233374642:T:C	rs7580412	T	C	T	Sox3.mouse_HMG_1	4	1	-	3.8050616825295442	-3.0072634094476918	TAAAAATAAAATTGTCA
chr2	233399965	233399966	chr2:233399966:G:A	rs10184166	G	A	A	Sox3.mouse_HMG_1	13	1	+	2.7069112537869677	-3.401194536238948	TATTAATAACAGTGTTG
chr2	233640167	233640168	chr2:233640168:A:G	rs2741034	A	G	A	Sox3.mouse_HMG_1	8	1	-	3.291022730767211	2.978283505856667	AAACAATTTTAGTGGGA
chr2	233693318	233693319	chr2:233693319:A:G	rs1105880	A	G	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr2	234022517	234022518	chr2:234022518:A:T	rs4663347	A	T	A	Sox3.mouse_HMG_1	16	1	+	2.801830035932965	4.2015131214111845	AAACAATACATTTATTA
chr2	234242147	234242148	chr2:234242148:G:A	rs78089363	G	A	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr2	234462002	234462003	chr2:234462003:T:C	rs13398317	T	C	C	Sox3.mouse_HMG_1	2	1	-	1.258301438678268	-3.1496335403021916	GAACAATTCAACTGGTG
chr2	234608434	234608435	chr2:234608435:A:C	rs1917946	A	C	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr2	235194479	235194480	chr2:235194480:A:G	rs1864716	A	G	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr2	235263646	235263647	chr2:235263647:C:T	rs10929113	C	T	C	Sox3.mouse_HMG_1	7	1	-	5.218705839320259	4.7226355195429495	GAGCCATGGAATTGTTT
chr2	235353808	235353809	chr2:235353809:T:C	rs57570634	T	C	T	Sox3.mouse_HMG_1	5	1	-	6.495640375532497	-0.2304931017699574	GAACAATTCATTTGTTA
chr2	235414545	235414546	chr2:235414546:C:G	rs75514575	C	G	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr2	235512259	235512260	chr2:235512260:G:A	rs10803646	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr2	235542118	235542119	chr2:235542119:T:C	rs4663607	T	C	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr2	235674381	235674382	chr2:235674382:G:T	rs12466302	G	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr2	235817416	235817417	chr2:235817417:T:C	rs72983080	T	C	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr2	235901114	235901115	chr2:235901115:A:G	rs12328959	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr2	235936679	235936680	chr2:235936680:T:C	rs979479799	T	C	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr2	235937632	235937633	chr2:235937633:G:A	rs72987087	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr2	236007000	236007001	chr2:236007001:G:C	rs10179607	G	C	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr2	236122371	236122372	chr2:236122372:A:G	rs73127554	A	G	A	Sox3.mouse_HMG_1	4	1	+	1.4044603850577788	-5.407864706919459	AAACATGTGAATTGTTG
chr2	236139534	236139535	chr2:236139535:C:T	rs6431431	C	T	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr2	236169633	236169634	chr2:236169634:G:A	rs67003507	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr2	236551721	236551722	chr2:236551722:T:C	rs7582574	T	C	C	Sox3.mouse_HMG_1	7	1	-	5.114598629189274	5.610668948966584	GAAGTATAACATTGTTT
chr2	236579993	236579994	chr2:236579994:G:A	rs144337876	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr2	236973114	236973115	chr2:236973115:T:C	rs10170437	T	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr2	237162241	237162242	chr2:237162242:A:G	rs4290604	A	G	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	237255274	237255275	chr2:237255275:C:T	rs79616598	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr2	237697687	237697688	chr2:237697688:G:A	rs10192143	G	A	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr2	237720055	237720056	chr2:237720056:C:T	rs114816769	C	T	C	Sox3.mouse_HMG_1	10	1	+	2.914285935993978	2.666006411408226	CAACAATTCTCGTGTCT
chr2	237732473	237732474	chr2:237732474:C:T	rs56182016	C	T	C	Sox3.mouse_HMG_1	2	1	-	2.8368014213726016	7.244736400353064	CAGCAATTAAAGTGATG
chr2	237734067	237734068	chr2:237734068:G:A	rs77283439	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr2	237737220	237737221	chr2:237737221:C:T	rs141074040	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr2	237924266	237924267	chr2:237924267:T:A	rs7602153	T	A	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr2	238029697	238029698	chr2:238029698:C:G	rs11887191	C	G	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr2	238236465	238236466	chr2:238236466:G:A	rs12328221	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr2	238236485	238236486	chr2:238236486:T:C	rs11674486	T	C	C	Sox3.mouse_HMG_1	9	1	+	2.0865662934768543	2.122272418361422	AGACAATAATCGTGTGT
chr2	238324159	238324160	chr2:238324160:C:T	rs6758621	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr2	238494749	238494750	chr2:238494750:C:T	rs73092663	C	T	C	Sox3.mouse_HMG_1	12	1	+	5.681595526054302	11.888061111272153	GAACAATGATGTCGTTT
chr2	238591857	238591858	chr2:238591858:G:A	rs55892426	G	A	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr2	238644847	238644848	chr2:238644848:A:G	rs73106894	A	G	A	Sox3.mouse_HMG_1	6	1	-	6.973373649333126	0.3272828797042098	AAACAATGCCAGTTTTC
chr2	238889024	238889025	chr2:238889025:G:C	rs540785959	G	C	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr2	238979691	238979692	chr2:238979692:T:G	rs4131058	T	G	T	Sox3.mouse_HMG_1	11	1	+	8.995944852031716	6.867966185170837	AAACAATCACATAGTTT
chr2	238995895	238995896	chr2:238995896:C:T	rs79329139	C	T	c	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr2	239025168	239025169	chr2:239025169:G:A	rs76341059	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr2	239040531	239040532	chr2:239040532:A:G	chr2:239040532:A:G	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr2	239040537	239040538	chr2:239040538:G:A	rs1295269012	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr2	239191505	239191506	chr2:239191506:C:T	rs895804	C	T	C	Sox3.mouse_HMG_1	7	1	-	0.1761310544873968	-0.31993926528991407	AGACAAAGCCAGTGTGG
chr2	239324391	239324392	chr2:239324392:C:T	rs114969440	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr2	239533488	239533489	chr2:239533489:T:A	rs1796446	T	A	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr2	239533541	239533542	chr2:239533542:A:G	rs2952667	A	G	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr2	239748350	239748351	chr2:239748351:G:A	rs1530009	G	A	G	Sox3.mouse_HMG_1	16	1	+	8.011325829383884	7.577494384662776	GAAGAATGTCAGTGTTG
chr2	239775914	239775915	chr2:239775915:G:T	rs74654345	G	T	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr2	239960745	239960746	chr2:239960746:G:A	rs143693330	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr2	239999231	239999232	chr2:239999232:T:C	rs13409579	T	C	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr2	240292856	240292857	chr2:240292857:C:T	rs141339513	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr2	240320592	240320593	chr2:240320593:G:A	rs55782345	G	A	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr2	240392789	240392790	chr2:240392790:A:C	rs1318523	A	C	A	Sox3.mouse_HMG_1	12	1	-	8.688337497792578	2.120209427124954	AAACAAAGGAAGTGTTT
chr2	240671301	240671302	chr2:240671302:C:T	rs10198255	C	T	C	Sox3.mouse_HMG_1	9	1	+	2.5475467231200386	2.511840598235471	AAAAGATGGCAGTGTTG
chr2	240952584	240952585	chr2:240952585:A:C	rs4610049	A	C	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr2	240952591	240952592	chr2:240952592:G:A	rs4605365	G	A	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr2	241129566	241129567	chr2:241129567:G:T	rs58910368	G	T	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr2	241279592	241279593	chr2:241279593:C:T	rs116418494	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr2	241538985	241538986	chr2:241538986:T:C	rs79995252	T	C	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr2	241787055	241787056	chr2:241787056:A:G	rs190609097	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.806627213508439	-1.8394635561204806	AAACAGTTGCATTCTTT
chr2	241980717	241980718	chr2:241980718:T:G	rs55992339	T	G	.	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr2	242037348	242037349	chr2:242037349:C:T	rs111884257	C	T	.	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr2	242037376	242037377	chr2:242037377:T:C	rs12477174	T	C	.	Sox3.mouse_HMG_1	1	1	-	4.040880251161898	-0.28655309224079667	CAACAATACCAGTGAGG
chr20	751099	751100	chr20:751100:A:G	rs6140090	A	G	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr20	758663	758664	chr20:758664:T:C	rs11087747	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr20	918230	918231	chr20:918231:A:G	rs74442091	A	G	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr20	958417	958418	chr20:958418:G:C	rs78998377	G	C	G	Sox3.mouse_HMG_1	4	1	-	0.310610555751255	0.22359917876162577	AAACCATGATACTGCTG
chr20	1167130	1167131	chr20:1167131:G:A	rs1049901	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr20	1214974	1214975	chr20:1214975:A:C	rs117318046	A	C	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr20	1335347	1335348	chr20:1335348:A:G	rs6041502	A	G	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr20	1470982	1470983	chr20:1470983:T:C	rs1543423	T	C	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr20	1480769	1480770	chr20:1480770:C:T	rs6079294	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr20	1706421	1706422	chr20:1706422:T:C	rs6135734	T	C	t	Sox3.mouse_HMG_1	11	1	+	1.839032619057212	-4.21842348990314	ACACAGTGATATTGTGA
chr20	1712968	1712969	chr20:1712969:A:T	rs75794831	A	T	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr20	1934490	1934491	chr20:1934491:A:G	rs41277148	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr20	2009335	2009336	chr20:2009336:C:T	rs1418044	C	T	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr20	2203922	2203923	chr20:2203923:T:C	rs4296494	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr20	2688310	2688311	chr20:2688311:A:T	rs6115555	A	T	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr20	2820154	2820155	chr20:2820155:A:C	rs7360412	A	C	C	Sox3.mouse_HMG_1	10	1	+	2.879127600355058	-3.6855278542262044	AAACAAGACAATTTTTG
chr20	2885129	2885130	chr20:2885130:G:A	rs1748066	G	A	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr20	2915712	2915713	chr20:2915713:C:T	rs73086613	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr20	3015850	3015851	chr20:3015851:C:T	rs1178016	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr20	3393647	3393648	chr20:3393648:C:T	rs239487	C	T	T	Sox3.mouse_HMG_1	11	1	+	0.44487634961372513	6.502332458574077	AAACAATGCTACGGTGA
chr20	3783048	3783049	chr20:3783049:G:A	rs74316544	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr20	3783094	3783095	chr20:3783095:T:C	rs138739393	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr20	3887799	3887800	chr20:3887800:T:C	rs68127408	T	C	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr20	3980766	3980767	chr20:3980767:T:A	rs60798474	T	A	T	Sox3.mouse_HMG_1	14	1	+	3.5373671522379153	-1.7481101964571764	GAACAAGTATTTTGTTT
chr20	4107423	4107424	chr20:4107424:T:C	rs6052358	T	C	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr20	4107449	4107450	chr20:4107450:C:T	rs4815655	C	T	T	Sox3.mouse_HMG_1	6	1	+	1.223310393644538	7.869401163273457	AAACAACAGAAATGTAT
chr20	4226211	4226212	chr20:4226212:A:G	rs835878	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr20	4367770	4367771	chr20:4367771:T:C	rs17316050	T	C	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr20	4367792	4367793	chr20:4367793:T:C	rs159786	T	C	T	Sox3.mouse_HMG_1	12	1	+	2.871311849335123	-3.3351537358827286	AGATAATGACACTGTTG
chr20	4483845	4483846	chr20:4483846:C:A	rs74831563	C	A	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr20	4554435	4554436	chr20:4554436:G:T	rs115489289	G	T	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr20	4590714	4590715	chr20:4590715:G:T	rs6139484	G	T	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr20	4602879	4602880	chr20:4602880:C:A	rs34599214	C	A	C	Sox3.mouse_HMG_1	16	1	-	9.937655792765893	10.903507433523005	AAACAATTTTGTTGTTG
chr20	4614217	4614218	chr20:4614218:T:C	rs75879402	T	C	T	Sox3.mouse_HMG_1	6	1	+	1.2339652739673754	-5.4121254956615426	AAACAATTGTGGTTTTG
chr20	4681326	4681327	chr20:4681327:G:C	rs145341944	G	C	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr20	4788530	4788531	chr20:4788531:G:C	rs6139553	G	C	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr20	4788536	4788537	chr20:4788537:G:A	rs2422987	G	A	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr20	4903156	4903157	chr20:4903157:C:G	rs1715382	C	G	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr20	5001958	5001959	chr20:5001959:T:G	rs2423082	T	G	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr20	5043590	5043591	chr20:5043591:C:T	rs404678	C	T	C	Sox3.mouse_HMG_1	9	1	+	-0.5696750163319637	-0.6053811412165324	CAGCAATGTCCTTGGTG
chr20	5127570	5127571	chr20:5127571:G:A	rs74894064	G	A	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr20	5581222	5581223	chr20:5581223:C:G	chr20:5581223:C:G	C	G	C	Sox3.mouse_HMG_1	5	1	-	0.042551362672467175	-0.04446001431716207	GAAGAGTACCAGTGTTA
chr20	5600138	5600139	chr20:5600139:A:C	rs75962660	A	C	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr20	5605135	5605136	chr20:5605136:A:G	rs73587616	A	G	a	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr20	5750182	5750183	chr20:5750183:G:A	rs78416765	G	A	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr20	6492833	6492834	chr20:6492834:T:A	rs2876034	T	A	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr20	6533477	6533478	chr20:6533478:C:T	rs118035811	C	T	C	Sox3.mouse_HMG_1	13	1	-	2.910944793474611	-3.197160996551305	TAAAAATGCCAGTGATT
chr20	6673169	6673170	chr20:6673170:G:A	rs11698137	G	A	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr20	6709854	6709855	chr20:6709855:T:A	rs1015151	T	A	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr20	6732382	6732383	chr20:6732383:T:G	rs114896541	T	G	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr20	7085708	7085709	chr20:7085709:C:T	rs148050731	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr20	7195708	7195709	chr20:7195709:A:G	rs16993133	A	G	G	Sox3.mouse_HMG_1	2	1	+	1.1928358706236908	-3.2150991083567715	TAACAATGCCATTCAAG
chr20	7463416	7463417	chr20:7463417:C:A	rs2326929	C	A	c	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr20	7923930	7923931	chr20:7923931:C:T	rs2247673	C	T	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr20	8020229	8020230	chr20:8020230:A:T	rs79860925	A	T	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr20	8044122	8044123	chr20:8044123:G:A	rs6039019	G	A	A	Sox3.mouse_HMG_1	8	1	-	1.313025463434329	1.6257646883448713	CAGCAATACCATTTTAA
chr20	8127914	8127915	chr20:8127915:G:C	rs77481626	G	C	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr20	8141914	8141915	chr20:8141915:C:G	rs13039823	C	G	T	Sox3.mouse_HMG_1	3	1	+	0.3609575831525668	-6.546077436505085	GAACAAGAATATGGTAG
chr20	8232420	8232421	chr20:8232421:G:C	rs6055682	G	C	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr20	8667324	8667325	chr20:8667325:T:C	rs6055987	T	C	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr20	8667331	8667332	chr20:8667332:A:G	rs13043435	A	G	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr20	8781355	8781356	chr20:8781356:C:T	rs6056106	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr20	8790284	8790285	chr20:8790285:A:C	rs2294598	A	C	C	Sox3.mouse_HMG_1	1	1	+	4.3377163963084095	-1.3001384999527028	GAACAATTATTTTATTT
chr20	9156776	9156777	chr20:9156777:A:C	rs6118508	A	C	A	Sox3.mouse_HMG_1	11	1	-	3.872525249188826	1.7445465823279462	TAACAATAAAATTAATG
chr20	9200283	9200284	chr20:9200284:G:A	rs62194769	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr20	9299207	9299208	chr20:9299208:G:A	rs6118571	G	A	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr20	9612055	9612056	chr20:9612056:C:G	rs6056756	C	G	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr20	9701199	9701200	chr20:9701200:A:G	rs8120907	A	G	G	Sox3.mouse_HMG_1	4	1	+	4.707104366062742	-2.105220725914493	CAAAAATGAAAGTGTTC
chr20	10093591	10093592	chr20:10093592:T:C	rs614270	T	C	C	Sox3.mouse_HMG_1	4	1	-	4.382591323224816	-2.4297337687524205	GAATAAGAGTATTGTTT
chr20	10367460	10367461	chr20:10367461:T:A	rs117342853	T	A	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr20	10466931	10466932	chr20:10466932:A:G	rs6039959	A	G	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr20	10559088	10559089	chr20:10559089:G:A	rs139785779	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr20	10656688	10656689	chr20:10656689:T:G	rs55649270	T	G	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr20	10659192	10659193	chr20:10659193:G:A	rs3790158	G	A	G	Sox3.mouse_HMG_1	3	1	-	0.3403821948140213	-5.642393923320303	CAACGTTGGCAGTGTTA
chr20	10739580	10739581	chr20:10739581:G:A	rs964435	G	A	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr20	10853749	10853750	chr20:10853750:T:C	rs6040200	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr20	11047432	11047433	chr20:11047433:C:G	rs6040319	C	G	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr20	11118116	11118117	chr20:11118117:T:C	rs60209466	T	C	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr20	11118123	11118124	chr20:11118124:A:G	rs73898097	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr20	11470456	11470457	chr20:11470457:T:C	rs62191897	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr20	11503949	11503950	chr20:11503950:G:A	rs145276342	G	A	G	Sox3.mouse_HMG_1	16	1	+	1.0125736091807875	0.5787421644596804	ATACAATAATAGTGCGG
chr20	11553839	11553840	chr20:11553840:C:G	rs2423576	C	G	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr20	11842784	11842785	chr20:11842785:C:T	rs16992747	C	T	T	Sox3.mouse_HMG_1	3	1	-	2.2579544007511654	2.4402759575451194	TAAGAATGCAAGTGTCT
chr20	11842805	11842806	chr20:11842806:C:G	rs7268819	C	G	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr20	11952909	11952910	chr20:11952910:A:G	rs60093772	A	G	g	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr20	11994218	11994219	chr20:11994219:A:C	rs12624901	A	C	A	Sox3.mouse_HMG_1	7	1	+	4.748292564502208	-0.37632925064525447	GAACCATACCAGTGTTC
chr20	12093565	12093566	chr20:12093566:A:G	rs6041087	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr20	12398203	12398204	chr20:12398204:C:A	rs6131331	C	A	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr20	12829280	12829281	chr20:12829281:C:T	rs616674	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr20	12929426	12929427	chr20:12929427:G:A	rs62201676	G	A	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr20	12941125	12941126	chr20:12941126:C:G	rs77061725	C	G	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr20	12984456	12984457	chr20:12984457:A:T	rs3848750	A	T	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr20	13008601	13008602	chr20:13008602:C:T	rs6078875	C	T	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr20	13008609	13008610	chr20:13008610:A:G	rs6074544	A	G	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr20	13100000	13100001	chr20:13100001:A:G	rs6041855	A	G	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr20	13101690	13101691	chr20:13101691:A:G	rs879697	A	G	G	Sox3.mouse_HMG_1	10	1	+	6.660302765600265	-0.24794239337107438	AAATAATGAAATTATTT
chr20	13102074	13102075	chr20:13102075:A:G	rs141623431	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr20	13206108	13206109	chr20:13206109:C:T	rs77407593	C	T	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr20	13252285	13252286	chr20:13252286:G:A	rs4814211	G	A	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr20	13274819	13274820	chr20:13274820:G:A	rs76498793	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr20	13274941	13274942	chr20:13274942:A:G	rs1885411	A	G	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr20	13313523	13313524	chr20:13313524:C:G	rs143859577	C	G	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr20	13396894	13396895	chr20:13396895:A:G	rs55940819	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr20	13458969	13458970	chr20:13458970:C:G	rs1884796	C	G	G	Sox3.mouse_HMG_1	3	1	+	5.457370771490721	-1.4496642481669308	GAACAAGGATAGTGTCT
chr20	13485254	13485255	chr20:13485255:C:T	rs6109908	C	T	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr20	13581676	13581677	chr20:13581677:C:A	rs112723315	C	A	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr20	13804151	13804152	chr20:13804152:G:A	rs116912906	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr20	14518483	14518484	chr20:14518484:C:T	rs35658161	C	T	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr20	14646198	14646199	chr20:14646199:C:A	rs1932935	C	A	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr20	14711759	14711760	chr20:14711760:A:G	rs140950875	A	G	A	Sox3.mouse_HMG_1	6	1	-	10.188351435959532	3.5422606663306144	GAACAATGCAACTGTTT
chr20	14746146	14746147	chr20:14746147:T:C	rs2184109	T	C	C	Sox3.mouse_HMG_1	16	1	+	7.435337947025321	3.833541281404339	AAAGAATGACAATGTTT
chr20	14764968	14764969	chr20:14764969:G:A	rs78019035	G	A	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr20	15113027	15113028	chr20:15113028:A:G	rs73096076	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr20	15126331	15126332	chr20:15126332:C:T	rs975993	C	T	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr20	15144529	15144530	chr20:15144530:T:C	rs368368	T	C	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr20	15257764	15257765	chr20:15257765:A:G	rs55990401	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr20	15317701	15317702	chr20:15317702:C:G	rs6131661	C	G	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr20	15365018	15365019	chr20:15365019:C:A	rs2423958	C	A	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr20	15365020	15365021	chr20:15365021:T:G	rs62203484	T	G	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr20	15365049	15365050	chr20:15365050:A:G	rs6079788	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr20	15539437	15539438	chr20:15539438:T:C	rs6043350	T	C	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr20	15576532	15576533	chr20:15576533:T:C	rs7272772	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr20	15611731	15611732	chr20:15611732:T:C	rs200742	T	C	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr20	15642170	15642171	chr20:15642171:A:C	rs6131683	A	C	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr20	15740316	15740317	chr20:15740317:A:G	rs13036467	A	G	A	Sox3.mouse_HMG_1	5	1	+	10.94233112869217	4.216197651389714	AAACAATGGCAGTCTTT
chr20	15928150	15928151	chr20:15928151:G:T	chr20:15928151:G:T	G	T	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr20	15943986	15943987	chr20:15943987:T:C	rs8117004	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr20	15976096	15976097	chr20:15976097:G:A	rs1339258	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr20	16023674	16023675	chr20:16023675:G:A	rs708980	G	A	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr20	16476375	16476376	chr20:16476376:G:A	rs6034490	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr20	16918922	16918923	chr20:16918923:A:C	rs2224306	A	C	A	Sox3.mouse_HMG_1	12	1	-	7.804196882344971	1.2360688116773497	GAACCATGACATTGTCT
chr20	17371375	17371376	chr20:17371376:A:G	rs62201010	A	G	a	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr20	17543654	17543655	chr20:17543655:C:T	rs8125456	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr20	17722022	17722023	chr20:17722023:A:G	rs73093520	A	G	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr20	17722062	17722063	chr20:17722063:T:G	rs78719261	T	G	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr20	17834198	17834199	chr20:17834199:C:A	rs809379	C	A	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr20	17835299	17835300	chr20:17835300:G:C	rs395670	G	C	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr20	17835307	17835308	chr20:17835308:G:A	rs6034912	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr20	17850370	17850371	chr20:17850371:C:T	rs79517174	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr20	17850399	17850400	chr20:17850400:C:T	chr20:17850400:C:T	C	T	C	Sox3.mouse_HMG_1	16	1	+	1.6478253642199676	5.24962202984095	GAGCAATGGAAGTGTGC
chr20	17850414	17850415	chr20:17850415:C:T	rs2618595	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr20	17911232	17911233	chr20:17911233:G:A	rs886755338	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr20	17965010	17965011	chr20:17965011:C:T	rs6105850	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr20	17966502	17966503	chr20:17966503:C:A	rs112615599	C	A	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr20	18012815	18012816	chr20:18012816:A:G	rs8120836	A	G	A	Sox3.mouse_HMG_1	0	1	+	1.654401829201557	0.2815851637400184	AAACAATCTTATTCTGA
chr20	18063282	18063283	chr20:18063283:C:T	rs6045173	C	T	t	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr20	18255592	18255593	chr20:18255593:G:A	rs11698408	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr20	18588954	18588955	chr20:18588955:T:C	rs963435	T	C	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr20	19454827	19454828	chr20:19454828:A:T	rs1883692	A	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr20	19590114	19590115	chr20:19590115:T:A	rs62200270	T	A	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr20	19624687	19624688	chr20:19624688:T:C	rs6075546	T	C	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr20	19661618	19661619	chr20:19661619:A:G	rs3790282	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr20	19690407	19690408	chr20:19690408:A:G	rs1535244	A	G	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr20	19784615	19784616	chr20:19784616:G:A	rs530382110	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr20	19885160	19885161	chr20:19885161:T:G	rs4813378	T	G	T	Sox3.mouse_HMG_1	8	1	-	4.300145978407949	3.1675855150288736	AAGCAATTATATTGGAT
chr20	19885177	19885178	chr20:19885178:T:G	rs6106148	T	G	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr20	19894847	19894848	chr20:19894848:A:G	rs11698652	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr20	19912603	19912604	chr20:19912604:A:G	rs423426	A	G	a	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr20	19918323	19918324	chr20:19918324:C:T	rs371321066	C	T	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr20	19981327	19981328	chr20:19981328:A:G	rs199594	A	G	A	Sox3.mouse_HMG_1	12	1	-	8.09533439560429	1.8888688103864382	GAACAATTTCAGTGATG
chr20	19981346	19981347	chr20:19981347:C:T	rs199595	C	T	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr20	20025723	20025724	chr20:20025724:T:C	rs7263	T	C	T	Sox3.mouse_HMG_1	10	1	-	1.162793499953791	-5.745451659017546	CAACAATGAAATACTCT
chr20	20216255	20216256	chr20:20216256:C:T	rs2424291	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr20	20358964	20358965	chr20:20358965:C:T	rs76657242	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr20	20821469	20821470	chr20:20821470:C:T	rs6082185	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr20	21302796	21302797	chr20:21302797:A:G	rs3761290	A	G	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr20	21398926	21398927	chr20:21398927:C:T	rs141683281	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr20	21554778	21554779	chr20:21554779:A:G	rs73129824	A	G	A	Sox3.mouse_HMG_1	4	1	+	3.317181213406734	-3.4951438785705	GAACAATGGAAACGTTG
chr20	21584364	21584365	chr20:21584365:G:A	rs4813433	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr20	21805000	21805001	chr20:21805001:C:T	rs6137444	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr20	22385633	22385634	chr20:22385634:C:T	rs199844	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr20	22447364	22447365	chr20:22447365:A:T	rs77437251	A	T	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr20	22586598	22586599	chr20:22586599:T:C	rs76417740	T	C	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr20	22719579	22719580	chr20:22719580:A:G	rs1983923	A	G	G	Sox3.mouse_HMG_1	14	1	-	2.5206855613655486	-3.589205353883159	AAACAATGTCAGGGTGC
chr20	22940135	22940136	chr20:22940136:C:G	rs4624450	C	G	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr20	23060943	23060944	chr20:23060944:T:C	rs73309897	T	C	T	Sox3.mouse_HMG_1	10	1	-	-0.6375983669846161	-7.545843525955954	CAACAAAGGCAGAGTTC
chr20	23096673	23096674	chr20:23096674:C:T	rs6113935	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr20	23112000	23112001	chr20:23112001:C:T	rs17756373	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr20	23112041	23112042	chr20:23112042:A:G	rs844846	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr20	23136027	23136028	chr20:23136028:A:T	rs844900	A	T	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr20	23258723	23258724	chr20:23258724:G:T	rs10485643	G	T	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr20	23277750	23277751	chr20:23277751:T:A	rs6048671	T	A	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr20	23495751	23495752	chr20:23495752:A:G	rs2273378	A	G	A	Sox3.mouse_HMG_1	15	1	-	4.017197151653514	-0.28530464614196954	AAACAATTGTCCTGTTG
chr20	23551445	23551446	chr20:23551446:C:T	rs13433149	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr20	23610825	23610826	chr20:23610826:G:A	rs6106689	G	A	G	Sox3.mouse_HMG_1	9	1	-	6.132384730504203	6.096678605619633	AAACAATGACCTTCTTA
chr20	23629263	23629264	chr20:23629264:G:A	rs114895328	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr20	23652594	23652595	chr20:23652595:C:T	rs73102376	C	T	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr20	23652607	23652608	chr20:23652608:T:C	rs73102379	T	C	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr20	23757065	23757066	chr20:23757066:G:A	rs6049078	G	A	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr20	23937816	23937817	chr20:23937817:T:A	rs2258909	T	A	T	Sox3.mouse_HMG_1	0	1	+	4.740347839817538	6.763502165133783	TGACAATGAAAGTGTGG
chr20	24011529	24011530	chr20:24011530:A:G	rs147318566	A	G	a	Sox3.mouse_HMG_1	11	1	-	2.090566012112899	-3.966890096847454	CATCAATTACATAGTAT
chr20	24049094	24049095	chr20:24049095:T:G	rs59581206	T	G	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr20	24331723	24331724	chr20:24331724:A:G	rs6083492	A	G	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr20	24376392	24376393	chr20:24376393:G:A	rs11087464	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr20	24491266	24491267	chr20:24491267:A:G	rs6049735	A	G	G	Sox3.mouse_HMG_1	2	1	+	1.3609500229099445	-3.0469849560705167	AAACAAAGTAAGGGTTG
chr20	24670881	24670882	chr20:24670882:T:C	rs35954840	T	C	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr20	24727486	24727487	chr20:24727487:T:C	rs565041722	T	C	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr20	24745206	24745207	chr20:24745207:T:C	rs4813531	T	C	C	Sox3.mouse_HMG_1	14	1	+	8.99387222869771	2.883981313449002	AAACATTGACATTGTCT
chr20	24999232	24999233	chr20:24999233:A:G	rs6037004	A	G	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr20	25055724	25055725	chr20:25055725:T:C	rs73906074	T	C	T	Sox3.mouse_HMG_1	4	1	-	1.5249438267804845	-5.287381265196751	CAAGAATACCAGTGGTT
chr20	25083675	25083676	chr20:25083676:A:C	rs6115024	A	C	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr20	25238177	25238178	chr20:25238178:C:G	rs6050471	C	G	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr20	25387736	25387737	chr20:25387737:A:G	rs34645895	A	G	A	Sox3.mouse_HMG_1	11	1	-	3.2300149124535746	-2.8274411965067783	AAACAATTTTTTTTTTA
chr20	25398367	25398368	chr20:25398368:T:C	rs2387883	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr20	25525990	25525991	chr20:25525991:T:C	rs958915869	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr20	25551830	25551831	chr20:25551831:G:A	rs117725244	G	A	G	Sox3.mouse_HMG_1	13	1	+	2.792880665727325	-3.3152251242985917	CAACATTGTCAGTGTGA
chr20	25567130	25567131	chr20:25567131:A:G	rs6132845	A	G	A	Sox3.mouse_HMG_1	5	1	+	5.511934308813997	-1.2141991684884588	AAACAATACCTTTGATG
chr20	25596146	25596147	chr20:25596147:G:A	rs6076369	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr20	28609422	28609423	chr20:28609423:T:G	rs1461100775	T	G	.	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr20	28804567	28804568	chr20:28804568:A:G	rs879189245	A	G	.	Sox3.mouse_HMG_1	2	1	+	4.1923946012285995	-0.21554037775186152	CTACAAAAACAGTGTTT
chr20	29636391	29636392	chr20:29636392:A:T	rs1430139725	A	T	.	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr20	29876511	29876512	chr20:29876512:G:A	rs1460358818	G	A	.	Sox3.mouse_HMG_1	15	1	-	1.0280008849808018	5.330502682776285	AGACAATGGCAGTGGCG
chr20	30425008	30425009	chr20:30425009:T:G	rs1441884331	T	G	.	Sox3.mouse_HMG_1	12	1	+	0.9509684287047205	-5.617159641962902	AAAAATTCACATTGTTT
chr20	30425026	30425027	chr20:30425027:G:C	rs1277203088	G	C	.	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr20	31058787	31058788	chr20:31058788:C:G	rs1310366425	C	G	.	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr20	31058821	31058822	chr20:31058822:A:C	rs1273849235	A	C	.	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr20	31059534	31059535	chr20:31059535:G:C	chr20:31059535:G:C	G	C	.	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr20	31062027	31062028	chr20:31062028:T:C	chr20:31062028:T:C	T	C	.	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr20	31062033	31062034	chr20:31062034:A:G	rs1264175895	A	G	.	Sox3.mouse_HMG_1	2	1	+	2.374322157594678	-2.0336128213857796	AAACAATGGAATGGAAT
chr20	31062691	31062692	chr20:31062692:G:A	rs1416128291	G	A	.	Sox3.mouse_HMG_1	15	1	+	3.464940013468279	4.534515249281843	AAGCAATGGAATTGAGT
chr20	31072106	31072107	chr20:31072107:G:T	rs1330426383	G	T	.	Sox3.mouse_HMG_1	11	1	+	4.6920321002930905	6.8200107671539705	AATCAATGCAAGTGTAA
chr20	31567323	31567324	chr20:31567324:C:T	rs545804263	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr20	31797753	31797754	chr20:31797754:G:T	rs6119725	G	T	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr20	31855669	31855670	chr20:31855670:C:G	rs4911533	C	G	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr20	31871635	31871636	chr20:31871636:C:T	rs8120234	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr20	32057097	32057098	chr20:32057098:C:T	rs80236822	C	T	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr20	32147535	32147536	chr20:32147536:G:A	rs4911548	G	A	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr20	32162542	32162543	chr20:32162543:C:T	rs6061197	C	T	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr20	32437427	32437428	chr20:32437428:T:C	rs2295763	T	C	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr20	32990036	32990037	chr20:32990037:C:T	rs6088058	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr20	33238220	33238221	chr20:33238221:T:C	rs6059183	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr20	33345473	33345474	chr20:33345474:T:C	rs293728	T	C	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr20	33352733	33352734	chr20:33352734:G:A	rs293712	G	A	a	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr20	33374053	33374054	chr20:33374054:T:C	rs291676	T	C	T	Sox3.mouse_HMG_1	12	1	+	5.6493264051806396	-0.557139180037212	CAACAAGGACACTGTTT
chr20	33693813	33693814	chr20:33693814:C:T	chr20:33693814:C:T	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr20	34037692	34037693	chr20:34037693:T:C	rs4911400	T	C	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr20	34061257	34061258	chr20:34061258:G:T	rs2268088	G	T	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr20	34404824	34404825	chr20:34404825:T:C	rs6088488	T	C	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr20	34746735	34746736	chr20:34746736:T:C	rs910872	T	C	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr20	34922858	34922859	chr20:34922859:A:G	rs6087649	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr20	35019747	35019748	chr20:35019748:C:T	rs6088678	C	T	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr20	35065813	35065814	chr20:35065814:C:G	rs6060196	C	G	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr20	35145532	35145533	chr20:35145533:T:C	rs118025823	T	C	T	Sox3.mouse_HMG_1	0	1	-	1.3331175942158282	-0.03969907124571026	AAACAATTCGAATGTCT
chr20	35152405	35152406	chr20:35152406:T:G	rs2152918	T	G	T	Sox3.mouse_HMG_1	10	1	-	2.3004196348777226	-4.26423581970354	TAAGAATAAAAGTGTAA
chr20	35157100	35157101	chr20:35157101:A:G	rs6088733	A	G	G	Sox3.mouse_HMG_1	10	1	+	2.4018507229638386	-4.5063944360075	CAAGAATTACATTTTTA
chr20	35280120	35280121	chr20:35280121:G:A	rs2250205	G	A	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr20	35363391	35363392	chr20:35363392:A:G	rs1252320964	A	G	A	Sox3.mouse_HMG_1	8	1	-	1.3700235802573322	1.0572843553467899	GAACAAGATTAGTATTG
chr20	35514475	35514476	chr20:35514476:T:G	rs528242926	T	G	T	Sox3.mouse_HMG_1	11	1	+	2.676461254810546	0.5484825879496661	GGGCAATGTTCTTGTTT
chr20	35649148	35649149	chr20:35649149:T:C	rs77886510	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr20	36094149	36094150	chr20:36094150:A:G	rs143870531	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr20	36094164	36094165	chr20:36094165:A:G	rs529770669	A	G	A	Sox3.mouse_HMG_1	10	1	+	1.292934815297409	-5.61531034367393	GAACAGTGAAAATGTAT
chr20	36538682	36538683	chr20:36538683:A:G	rs57900015	A	G	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr20	36836822	36836823	chr20:36836823:T:C	rs187366352	T	C	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr20	36836833	36836834	chr20:36836834:T:C	rs191906463	T	C	T	Sox3.mouse_HMG_1	15	1	-	1.6684047547563006	0.5988295189427364	GCACAATGGGATTGTAG
chr20	37200422	37200423	chr20:37200423:A:G	rs188749677	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr20	37319960	37319961	chr20:37319961:T:G	rs6017779	T	G	G	Sox3.mouse_HMG_1	0	1	+	2.7113778536974236	3.361715513552128	TATCAAAAATAGTGTTT
chr20	37514318	37514319	chr20:37514319:G:A	rs2425355	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr20	38171232	38171233	chr20:38171233:T:C	rs1053625063	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.8597701193344585	-3.8663633579679977	TAACAATAATAGAATTG
chr20	38253797	38253798	chr20:38253798:A:T	rs6024343	A	T	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr20	38253813	38253814	chr20:38253814:G:T	rs3994	G	T	g	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr20	38275048	38275049	chr20:38275049:T:G	rs77333306	T	G	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr20	38287696	38287697	chr20:38287697:T:C	rs73283280	T	C	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr20	38292113	38292114	chr20:38292114:G:T	rs13036313	G	T	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr20	38356646	38356647	chr20:38356647:C:T	rs76585941	C	T	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr20	38752811	38752812	chr20:38752812:A:G	rs2757518	A	G	a	Sox3.mouse_HMG_1	5	1	+	1.3484605363016866	-5.377672941000769	GGACAATGCCACTGTGA
chr20	38848113	38848114	chr20:38848114:C:T	rs1286774016	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr20	38929250	38929251	chr20:38929251:A:G	rs67343649	A	G	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr20	39046352	39046353	chr20:39046353:C:G	rs8118808	C	G	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr20	39046367	39046368	chr20:39046368:A:T	rs6129159	A	T	T	Sox3.mouse_HMG_1	2	1	+	2.0324403011912135	-3.869646434765552	GTACAATGTAAGTCTTA
chr20	39048681	39048682	chr20:39048682:T:C	rs138786193	T	C	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr20	39426371	39426372	chr20:39426372:A:C	rs2143215	A	C	C	Sox3.mouse_HMG_1	14	1	-	1.2517004730082397	-5.174948778773758	ATTCCATGATATTGTTA
chr20	39658796	39658797	chr20:39658797:T:C	rs927290	T	C	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr20	39668612	39668613	chr20:39668613:A:G	rs1123102	A	G	G	Sox3.mouse_HMG_1	1	1	+	5.3071177580926925	0.9796844146899992	TAACAAAGACATTGTGA
chr20	39796228	39796229	chr20:39796229:C:T	rs10485661	C	T	C	Sox3.mouse_HMG_1	10	1	-	3.232250662828461	10.140495821799801	AAGCAATCATGTTGTTT
chr20	40269014	40269015	chr20:40269015:A:G	rs10153982	A	G	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr20	40331791	40331792	chr20:40331792:C:T	rs16988954	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr20	40462873	40462874	chr20:40462874:A:G	rs2902941	A	G	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr20	40482050	40482051	chr20:40482051:C:T	rs73908337	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr20	40495400	40495401	chr20:40495401:T:C	rs6029145	T	C	T	Sox3.mouse_HMG_1	6	1	+	4.27674035607032	-2.369350413558601	ACAAAATTGTATTGTTG
chr20	40495408	40495409	chr20:40495409:T:C	rs6029146	T	C	C	Sox3.mouse_HMG_1	14	1	+	4.27674035607032	-1.8331505591783872	ACAAAATTGTATTGTTG
chr20	40781630	40781631	chr20:40781631:T:C	rs74167718	T	C	C	Sox3.mouse_HMG_1	14	1	+	1.4963940149506956	-4.613496900298012	AGACAATGCCAGAGTGG
chr20	40994696	40994697	chr20:40994697:A:G	rs6124299	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr20	41012238	41012239	chr20:41012239:C:T	rs6016501	C	T	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr20	41249228	41249229	chr20:41249229:T:C	rs4810311	T	C	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr20	41318121	41318122	chr20:41318122:C:G	chr20:41318122:C:G	C	G	C	Sox3.mouse_HMG_1	3	1	+	2.5014755072597774	-4.40555951239788	CTCCAATTCCAGTGTTT
chr20	41478709	41478710	chr20:41478710:G:A	rs6029702	G	A	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr20	41500589	41500590	chr20:41500590:G:C	rs1010901	G	C	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr20	42276207	42276208	chr20:42276208:G:T	rs73909256	G	T	G	Sox3.mouse_HMG_1	13	1	-	6.757781706449171	6.757781706449171	GAGCAATAGTATTCTTT
chr20	42391686	42391687	chr20:42391687:A:G	rs16986829	A	G	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr20	43583972	43583973	chr20:43583973:A:T	rs4560183	A	T	A	Sox3.mouse_HMG_1	12	1	-	2.784901800561174	-2.803290273071938	GAACAAAATAATTTTTT
chr20	43922998	43922999	chr20:43922999:C:T	rs73908111	C	T	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr20	44015606	44015607	chr20:44015607:C:T	rs188176006	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr20	44129600	44129601	chr20:44129601:G:A	rs761210	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr20	44312987	44312988	chr20:44312988:T:C	rs6031507	T	C	C	Sox3.mouse_HMG_1	4	1	-	1.2413391801123206	-5.570985911864917	AAACAAGTTTAGGGTTG
chr20	44356714	44356715	chr20:44356715:A:G	rs6031546	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr20	44599769	44599770	chr20:44599770:A:G	rs190535907	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr20	44777134	44777135	chr20:44777135:G:C	rs140327843	G	C	G	Sox3.mouse_HMG_1	1	1	+	0.21518398392349625	-1.095237568934924	AGTCGATGTCAGTGTTT
chr20	44840988	44840989	chr20:44840989:T:C	rs6103887	T	C	T	Sox3.mouse_HMG_1	11	1	+	0.2721896928581568	-5.785266416102195	CAGCATTTGCATTGTAG
chr20	44970063	44970064	chr20:44970064:C:T	rs927000	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr20	45049641	45049642	chr20:45049642:T:C	rs2299977	T	C	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr20	45049686	45049687	chr20:45049687:A:C	rs183317848	A	C	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr20	45087210	45087211	chr20:45087211:A:G	rs113849535	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr20	45306296	45306297	chr20:45306297:T:C	rs2233085	T	C	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr20	45347026	45347027	chr20:45347027:A:C	rs1981430	A	C	A	Sox3.mouse_HMG_1	9	1	-	1.515143083393141	-4.485794798272723	CAACAATCTTACTGTGT
chr20	45347052	45347053	chr20:45347053:G:T	rs1981429	G	T	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr20	45354927	45354928	chr20:45354928:G:T	rs8123741	G	T	G	Sox3.mouse_HMG_1	0	1	+	1.726267078114076	1.0759294182593697	GGGCAAGAACATTGTTG
chr20	45616152	45616153	chr20:45616153:C:A	rs540230335	C	A	C	Sox3.mouse_HMG_1	2	1	-	1.799946068133607	0.30579431115730504	AAGAAATTCTATTGTGT
chr20	45817171	45817172	chr20:45817172:T:C	rs188681934	T	C	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr20	45882174	45882175	chr20:45882175:A:G	rs4812974	A	G	a	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr20	46636265	46636266	chr20:46636266:A:G	rs6122514	A	G	A	Sox3.mouse_HMG_1	2	1	-	4.091575672237845	3.5683275284732954	GATCTATAGTATTGTTG
chr20	46703692	46703693	chr20:46703693:T:C	rs112143500	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr20	46831683	46831684	chr20:46831684:G:A	rs6066084	G	A	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr20	46840450	46840451	chr20:46840451:A:G	rs3092038	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.3352959146069177	-3.3908375626955367	CAACCATGACAGTGGTT
chr20	46999195	46999196	chr20:46999196:A:G	rs6094548	A	G	A	Sox3.mouse_HMG_1	0	1	+	8.177201868061058	6.8043852025995175	AAACATTTAAAGTGTTT
chr20	47029997	47029998	chr20:47029998:A:G	rs4810589	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr20	47118484	47118485	chr20:47118485:C:G	rs6122555	C	G	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr20	47232010	47232011	chr20:47232011:T:C	rs79718654	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr20	47262444	47262445	chr20:47262445:T:C	rs2294560	T	C	T	Sox3.mouse_HMG_1	5	1	-	5.352816408235253	-1.3733170690672027	TAACAATGCCATACTTT
chr20	47297238	47297239	chr20:47297239:G:A	rs900886229	G	A	G	Sox3.mouse_HMG_1	3	1	-	2.1096834677381686	-3.8730926503961527	TGACGATGATATTGTAA
chr20	47311117	47311118	chr20:47311118:A:C	rs114781382	A	C	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr20	47336289	47336290	chr20:47336290:C:T	rs140915989	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr20	47432354	47432355	chr20:47432355:C:T	rs2903925	C	T	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr20	47479713	47479714	chr20:47479714:C:G	rs12480081	C	G	C	Sox3.mouse_HMG_1	7	1	-	0.10873112552425795	-5.511961009400512	AAACAATGGCAGTTCAG
chr20	47489749	47489750	chr20:47489750:C:T	rs116941997	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr20	47610876	47610877	chr20:47610877:G:A	rs6066408	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr20	47674739	47674740	chr20:47674740:G:T	rs77513685	G	T	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr20	47681181	47681182	chr20:47681182:G:A	rs73913415	G	A	G	Sox3.mouse_HMG_1	7	1	+	0.9430607469965164	0.446990427219206	TTCCAATGGCATTGTAA
chr20	47878736	47878737	chr20:47878737:T:C	rs76779746	T	C	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr20	47887971	47887972	chr20:47887972:C:A	rs2426003	C	A	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr20	47895394	47895395	chr20:47895395:G:T	rs4810725	G	T	-	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr20	47928610	47928611	chr20:47928611:G:A	rs6018804	G	A	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr20	47991052	47991053	chr20:47991053:C:T	rs4810744	C	T	C	Sox3.mouse_HMG_1	1	1	+	2.299814529084146	3.047330499071057	GCACAAAGCAATTGTTA
chr20	48140856	48140857	chr20:48140857:T:G	rs4624440	T	G	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr20	48503233	48503234	chr20:48503234:G:A	rs993236165	G	A	g	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr20	48505270	48505271	chr20:48505271:C:A	rs1181808486	C	A	-	Sox3.mouse_HMG_1	13	1	-	1.4510389616419286	-4.918080653753607	GAGCAATGCTGTTGTAA
chr20	48513427	48513428	chr20:48513428:G:C	rs1190898161	G	C	-	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr20	48538896	48538897	chr20:48538897:T:C	rs16993895	T	C	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr20	48809588	48809589	chr20:48809589:T:G	rs16994152	T	G	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr20	48846657	48846658	chr20:48846658:T:A	rs1049909417	T	A	T	Sox3.mouse_HMG_1	9	1	-	2.127896059697916	3.5458343216424475	ACACAATAGAAGTTTTG
chr20	49559519	49559520	chr20:49559520:G:A	rs61565445	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr20	49606020	49606021	chr20:49606021:C:T	rs116865012	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr20	49678900	49678901	chr20:49678901:G:C	rs763800638	G	C	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr20	49805762	49805763	chr20:49805763:G:A	rs913539232	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr20	49848281	49848282	chr20:49848282:G:T	rs6020085	G	T	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr20	49848383	49848384	chr20:49848384:A:G	rs184343568	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr20	49901937	49901938	chr20:49901938:A:G	rs566442362	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr20	49920716	49920717	chr20:49920717:T:C	rs6067270	T	C	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr20	50215597	50215598	chr20:50215598:C:T	rs11699802	C	T	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr20	50355147	50355148	chr20:50355148:G:T	rs4809781	G	T	N	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr20	50445746	50445747	chr20:50445747:G:A	rs6095951	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr20	50563527	50563528	chr20:50563528:T:C	rs2145697	T	C	C	Sox3.mouse_HMG_1	14	1	+	1.4763387500799499	-4.633552165168757	AACCAATACCATTATGT
chr20	50568008	50568009	chr20:50568009:A:G	rs11698821	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr20	50980789	50980790	chr20:50980790:G:A	rs989954860	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr20	50981744	50981745	chr20:50981745:G:A	chr20:50981745:G:A	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr20	51420171	51420172	chr20:51420172:A:G	rs6021193	A	G	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr20	51447345	51447346	chr20:51447346:A:C	rs117370390	A	C	A	Sox3.mouse_HMG_1	9	1	+	2.1945311650196935	3.6481755518487944	AAACAATTTAAGTTTCA
chr20	51447558	51447559	chr20:51447559:C:A	rs575620455	C	A	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr20	51529332	51529333	chr20:51529333:T:C	rs112394840	T	C	T	Sox3.mouse_HMG_1	11	1	+	0.9242406909885778	-5.133215417971774	AAGCATTTACATTGGTT
chr20	51623215	51623216	chr20:51623216:T:C	rs4811206	T	C	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr20	51668751	51668752	chr20:51668752:T:C	rs910079344	T	C	T	Sox3.mouse_HMG_1	6	1	-	3.043714955423542	3.043714955423542	CAACAAAGCCCTTGTTG
chr20	51711724	51711725	chr20:51711725:T:C	rs192575491	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr20	51984899	51984900	chr20:51984900:G:A	rs4811272	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr20	52243121	52243122	chr20:52243122:T:G	rs4811315	T	G	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr20	52339067	52339068	chr20:52339068:G:T	rs6021869	G	T	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr20	52616460	52616461	chr20:52616461:C:A	rs35277443	C	A	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr20	52634419	52634420	chr20:52634420:G:A	rs856429	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr20	52688325	52688326	chr20:52688326:C:T	rs78938668	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr20	52942151	52942152	chr20:52942152:A:G	rs2002694	A	G	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr20	52964390	52964391	chr20:52964391:A:C	rs753143495	A	C	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr20	53001182	53001183	chr20:53001183:A:G	rs6013591	A	G	A	Sox3.mouse_HMG_1	11	1	+	6.463028074335417	10.197505501381164	TTACAATGACAATGTTG
chr20	53001194	53001195	chr20:53001195:C:T	rs62206631	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr20	53098313	53098314	chr20:53098314:T:C	rs2801002	T	C	T	Sox3.mouse_HMG_1	0	1	-	2.06048564899409	0.6876689835325512	AGACATAGACATTGTTT
chr20	53231888	53231889	chr20:53231889:A:G	rs185783525	A	G	A	Sox3.mouse_HMG_1	11	1	-	6.039884118967613	-0.017571989992738568	AAAAAAAAATATTGTTT
chr20	53349851	53349852	chr20:53349852:T:G	rs169270	T	G	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr20	53384450	53384451	chr20:53384451:G:A	rs6022437	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr20	53426164	53426165	chr20:53426165:G:C	rs77936907	G	C	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr20	53446156	53446157	chr20:53446157:G:T	chr20:53446157:G:T	G	T	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr20	53624131	53624132	chr20:53624132:C:A	rs6097497	C	A	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr20	53630066	53630067	chr20:53630067:C:T	rs6068595	C	T	c	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr20	53735570	53735571	chr20:53735571:T:C	rs7265045	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr20	53771776	53771777	chr20:53771777:A:G	rs6097569	A	G	G	Sox3.mouse_HMG_1	16	1	+	1.231364842309746	1.6651962870308532	AAAACATTCAATTGTTA
chr20	53869587	53869588	chr20:53869588:G:C	rs78329290	G	C	G	Sox3.mouse_HMG_1	12	1	-	-0.7648127683990353	-1.1264752538488063	AAACATTGGCAACGTTG
chr20	54044528	54044529	chr20:54044529:T:C	rs73132911	T	C	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr20	54057202	54057203	chr20:54057203:C:T	rs763056492	C	T	C	Sox3.mouse_HMG_1	13	1	-	1.688757908334908	-4.419347881691008	AGACAACAGAATTGTGT
chr20	54220069	54220070	chr20:54220070:T:A	rs1032212729	T	A	T	Sox3.mouse_HMG_1	12	1	+	11.178910456208753	5.59071838257564	CAACAATGAGATTGTTA
chr20	54228543	54228544	chr20:54228544:A:G	rs374623	A	G	G	Sox3.mouse_HMG_1	10	1	+	7.862761942628101	0.9545167836567636	AAACAATAATATTATCA
chr20	54269510	54269511	chr20:54269511:A:G	rs292136	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr20	54269826	54269827	chr20:54269827:G:T	rs292137	G	T	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr20	54310962	54310963	chr20:54310963:T:A	rs28470915	T	A	T	Sox3.mouse_HMG_1	1	1	+	3.102416381941294	7.992755308215493	ATACAATTACATTCTGT
chr20	54633881	54633882	chr20:54633882:C:T	rs6014093	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr20	54671149	54671150	chr20:54671150:T:C	rs4528829	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr20	54716216	54716217	chr20:54716217:G:A	rs2143709	G	A	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr20	55565280	55565281	chr20:55565281:A:G	rs6024213	A	G	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr20	55679391	55679392	chr20:55679392:G:A	rs2870644	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr20	55774505	55774506	chr20:55774506:A:C	rs2180281	A	C	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr20	56144279	56144280	chr20:56144280:A:G	rs6014611	A	G	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr20	56273299	56273300	chr20:56273300:C:T	rs2094184	C	T	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr20	56615543	56615544	chr20:56615544:C:T	rs893453984	C	T	C	Sox3.mouse_HMG_1	14	1	-	6.8772837487501866	8.018455651837092	AAACAATAATATTTGTT
chr20	56691624	56691625	chr20:56691625:T:C	rs6025069	T	C	C	Sox3.mouse_HMG_1	1	1	-	7.378739813303955	3.0513064699012657	AAACAATGTTAATATTT
chr20	56988015	56988016	chr20:56988016:G:A	chr20:56988016:G:A	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr20	56988019	56988020	chr20:56988020:C:T	rs1276423	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr20	57379527	57379528	chr20:57379528:C:T	rs35983663	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr20	57408638	57408639	chr20:57408639:T:C	rs11546711	T	C	T	Sox3.mouse_HMG_1	9	1	+	0.25529506383530653	0.29100118871987435	AGACGACGATAGTGTTT
chr20	57479751	57479752	chr20:57479752:C:A	rs78251101	C	A	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr20	57634156	57634157	chr20:57634157:A:C	rs2143664	A	C	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr20	58071456	58071457	chr20:58071457:C:T	rs149589824	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr20	58109033	58109034	chr20:58109034:T:A	rs6015197	T	A	a	Sox3.mouse_HMG_1	1	1	-	2.6204659856363315	-2.269872940637869	GAACAATTCCATCTTTG
chr20	58208490	58208491	chr20:58208491:A:C	rs538462	A	C	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr20	58906531	58906532	chr20:58906532:C:G	rs6015400	C	G	G	Sox3.mouse_HMG_1	13	1	-	7.827820403886774	1.7197146138608583	AAATAATAATAATGTTT
chr20	59387115	59387116	chr20:59387116:G:A	rs6100423	G	A	G	Sox3.mouse_HMG_1	5	1	+	3.343682834334814	10.06981631163727	GAACAGTTTTATTTTTT
chr20	59387134	59387135	chr20:59387135:C:T	rs6026849	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr20	59394502	59394503	chr20:59394503:G:A	rs6128557	G	A	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr20	59406575	59406576	chr20:59406576:T:G	rs75177828	T	G	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr20	59406597	59406598	chr20:59406598:C:A	rs4810168	C	A	C	Sox3.mouse_HMG_1	8	1	+	1.8355872242250242	2.9681476876040995	GAGCAAGGCAAGTGTTG
chr20	59427929	59427930	chr20:59427930:A:G	rs271982	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr20	59639268	59639269	chr20:59639269:A:G	rs533406608	A	G	A	Sox3.mouse_HMG_1	10	1	+	4.21133833106761	-2.696906827903729	AAACAAAGACATAGTAT
chr20	59758278	59758279	chr20:59758279:A:T	rs1182481	A	T	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr20	59776044	59776045	chr20:59776045:A:C	rs1182490	A	C	A	Sox3.mouse_HMG_1	6	1	-	1.0170708117480358	-5.891384222348374	AGACTATGCCAGTGATT
chr20	59966675	59966676	chr20:59966676:T:C	rs146520441	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr20	60011598	60011599	chr20:60011599:C:T	rs73131342	C	T	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr20	60078281	60078282	chr20:60078282:A:G	rs11086694	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.8748323658473964	-4.85130111145506	AAGCAATAAAAATGCTT
chr20	60273008	60273009	chr20:60273009:A:G	rs6015705	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr20	60306576	60306577	chr20:60306577:G:A	rs140482264	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr20	60481807	60481808	chr20:60481808:T:C	rs348787	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr20	60694139	60694140	chr20:60694140:A:C	rs17802507	A	C	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr20	60694169	60694170	chr20:60694170:T:C	rs62205646	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr20	60811572	60811573	chr20:60811573:A:G	rs6128917	A	G	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr20	60898293	60898294	chr20:60898294:T:A	rs17794305	T	A	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr20	60920204	60920205	chr20:60920205:C:T	rs6124032	C	T	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr20	60942261	60942262	chr20:60942262:T:G	rs237644	T	G	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr20	61002750	61002751	chr20:61002751:A:G	rs62201893	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr20	61209887	61209888	chr20:61209888:C:A	rs1857195	C	A	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr20	61548199	61548200	chr20:61548200:G:T	rs35960097	G	T	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr20	61569867	61569868	chr20:61569868:G:A	rs139504180	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr20	61757939	61757940	chr20:61757940:G:A	rs78770067	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr20	61860032	61860033	chr20:61860033:G:A	rs78688375	G	A	G	Sox3.mouse_HMG_1	6	1	+	-0.616814018873418	-0.616814018873418	GAACAAGGACAGTGCCT
chr20	62019829	62019830	chr20:62019830:A:C	rs6142922	A	C	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr20	62043820	62043821	chr20:62043821:G:A	rs6061980	G	A	G	Sox3.mouse_HMG_1	12	1	-	3.4773222737629506	9.683787858980802	AGGCAATGTCATCGTTG
chr20	62183505	62183506	chr20:62183506:G:A	rs73307497	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr20	62608533	62608534	chr20:62608534:A:T	rs28483326	A	T	T	Sox3.mouse_HMG_1	7	1	-	4.322404416787615	5.36388320175246	AAATAAATAAATTGTTT
chr20	62855299	62855300	chr20:62855300:G:A	rs6011421	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr20	62928651	62928652	chr20:62928652:T:G	rs3746759	T	G	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr20	63022326	63022327	chr20:63022327:T:C	rs6011536	T	C	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr20	63031286	63031287	chr20:63031287:G:A	rs57684920	G	A	G	Sox3.mouse_HMG_1	16	1	+	0.13837389608346923	-0.29545754863763785	TAACATGGCCAGTGTTG
chr20	63137174	63137175	chr20:63137175:G:A	rs2427524	G	A	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr20	63604636	63604637	chr20:63604637:G:C	rs148481039	G	C	G	Sox3.mouse_HMG_1	0	1	+	1.8620582846579192	1.6452834377672594	GAACAAAGACCTTGTAT
chr20	63606378	63606379	chr20:63606379:G:A	rs13040623	G	A	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr20	63801532	63801533	chr20:63801533:T:C	rs6011124	T	C	C	Sox3.mouse_HMG_1	1	1	+	3.858560405771899	3.1110444357849887	ATACATTGAAAGTGTTG
chr21	5243457	5243458	chr21:5243458:T:A	rs948091636	T	A	.	Sox3.mouse_HMG_1	16	1	-	4.61001000556465	6.00969309104287	AAACAATAGTAGCGTCA
chr21	8761704	8761705	chr21:8761705:C:T	rs80292974	C	T	.	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr21	8989411	8989412	chr21:8989412:C:T	rs367836649	C	T	.	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr21	8989455	8989456	chr21:8989456:A:G	rs79279102	A	G	.	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr21	8993615	8993616	chr21:8993616:G:C	rs78756767	G	C	.	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr21	8993626	8993627	chr21:8993627:A:C	rs78272994	A	C	.	Sox3.mouse_HMG_1	12	1	-	4.621945857023083	-1.9461822136445406	AAAAAAAAAAATTGTTT
chr21	8994629	8994630	chr21:8994630:G:T	rs797015315	G	T	.	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr21	9000716	9000717	chr21:9000717:A:G	rs371505215	A	G	.	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr21	9000717	9000718	chr21:9000718:C:T	rs376044444	C	T	.	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr21	9730066	9730067	chr21:9730067:A:C	rs1336649193	A	C	.	Sox3.mouse_HMG_1	2	1	+	9.793947011192506	3.3686121314711945	AAAAAATAGTAGTGTTT
chr21	9943670	9943671	chr21:9943671:A:C	rs4038904	A	C	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr21	10663710	10663711	chr21:10663711:C:T	rs28460337	C	T	.	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr21	10784324	10784325	chr21:10784325:C:A	rs28869260	C	A	.	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr21	13446887	13446888	chr21:13446888:C:T	rs118155607	C	T	.	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr21	14080531	14080532	chr21:14080532:G:C	rs35823367	G	C	g	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr21	14415416	14415417	chr21:14415417:G:A	rs2822661	G	A	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr21	14492023	14492024	chr21:14492024:C:T	rs1983538	C	T	T	Sox3.mouse_HMG_1	7	1	-	6.2547474411560495	5.7586771213787395	AAACAATGAAGTAGTTT
chr21	14583326	14583327	chr21:14583327:T:C	rs2822792	T	C	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr21	14676017	14676018	chr21:14676018:A:G	rs115675864	A	G	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr21	15532152	15532153	chr21:15532153:A:G	rs773508987	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr21	15566759	15566760	chr21:15566760:G:T	rs2064051	G	T	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr21	15628734	15628735	chr21:15628735:C:T	rs2823400	C	T	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr21	15659793	15659794	chr21:15659794:A:C	rs73892700	A	C	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr21	15682074	15682075	chr21:15682075:A:G	rs979585	A	G	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr21	16004291	16004292	chr21:16004292:A:G	rs62217617	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr21	16124248	16124249	chr21:16124249:G:C	rs79218466	G	C	G	Sox3.mouse_HMG_1	13	1	+	1.3440920875346825	-4.7640137024912335	TAACAGTGGCATAGTAT
chr21	16159407	16159408	chr21:16159408:C:T	rs78012105	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr21	16282830	16282831	chr21:16282831:C:T	rs185098855	C	T	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr21	16370009	16370010	chr21:16370010:A:G	rs2823756	A	G	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr21	16438989	16438990	chr21:16438990:A:C	rs13048531	A	C	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr21	17106209	17106210	chr21:17106210:T:C	rs9978115	T	C	t	Sox3.mouse_HMG_1	14	1	+	1.5322863503816722	-4.577604564867035	AAACAATACAGGAGTTG
chr21	17327454	17327455	chr21:17327455:A:C	rs59267060	A	C	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr21	17351351	17351352	chr21:17351352:A:G	rs2824282	A	G	A	Sox3.mouse_HMG_1	14	1	-	3.7039796738941977	-2.4059112413545094	AAATCATTTTATTGTTA
chr21	17436681	17436682	chr21:17436682:G:A	rs117373809	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr21	17437057	17437058	chr21:17437058:C:T	rs148135866	C	T	C	Sox3.mouse_HMG_1	11	1	+	1.2730028940049354	7.330459002965288	AAGCAATAGTGCTGTTT
chr21	17784537	17784538	chr21:17784538:G:A	rs243596	G	A	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr21	17820454	17820455	chr21:17820455:G:T	rs10446073	G	T	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr21	17911922	17911923	chr21:17911923:T:A	rs8130106	T	A	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr21	17989615	17989616	chr21:17989616:T:G	rs197558	T	G	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr21	18443674	18443675	chr21:18443675:C:T	rs983074196	C	T	c	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr21	18570386	18570387	chr21:18570387:C:T	rs2824916	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr21	18705907	18705908	chr21:18705908:G:A	rs11701654	G	A	G	Sox3.mouse_HMG_1	13	1	+	4.9434004516002945	-1.1647053384256216	AAACTATTTTATAGTTG
chr21	19046047	19046048	chr21:19046048:G:A	rs73893496	G	A	g	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr21	19046072	19046073	chr21:19046073:C:T	rs10854430	C	T	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr21	19176876	19176877	chr21:19176877:C:T	rs35321618	C	T	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr21	19182829	19182830	chr21:19182830:T:C	rs762290	T	C	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr21	19262130	19262131	chr21:19262131:C:T	rs9653753	C	T	C	Sox3.mouse_HMG_1	10	1	+	5.991479578416817	5.743200053831066	AAACAATACACTTGTGT
chr21	19266663	19266664	chr21:19266664:T:C	rs9984800	T	C	T	Sox3.mouse_HMG_1	13	1	-	4.1169431611396305	10.225048951165546	AATCAATAAAAGTATTT
chr21	19268639	19268640	chr21:19268640:A:C	rs2032155	A	C	A	Sox3.mouse_HMG_1	6	1	-	2.309844279535447	-4.598610754560963	TAACAATGCTAGCTTTT
chr21	19638442	19638443	chr21:19638443:T:C	rs2154623	T	C	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr21	20460158	20460159	chr21:20460159:T:G	rs1735841	T	G	G	Sox3.mouse_HMG_1	4	1	-	3.0036040723991873	-3.721709642588417	GAACAATAAAATTTCTA
chr21	21024055	21024056	chr21:21024056:G:A	rs9983588	G	A	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr21	21530492	21530493	chr21:21530493:C:T	rs2183564	C	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr21	21907638	21907639	chr21:21907639:A:T	rs114168678	A	T	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr21	22247472	22247473	chr21:22247473:C:T	rs75658980	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr21	23175595	23175596	chr21:23175596:C:T	rs2135335	C	T	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr21	23438438	23438439	chr21:23438439:T:C	rs200709	T	C	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr21	23532210	23532211	chr21:23532211:T:C	rs17665906	T	C	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr21	24014047	24014048	chr21:24014048:A:G	rs34542175	A	G	a	Sox3.mouse_HMG_1	11	1	-	1.652585041029594	-4.404871067930759	AAGAAATGCTATTGATG
chr21	24117535	24117536	chr21:24117536:A:T	rs1622396	A	T	a	Sox3.mouse_HMG_1	9	1	-	7.152302507864464	5.734364245919932	GAACAATAATAATGATT
chr21	24214388	24214389	chr21:24214389:G:A	rs73140923	G	A	A	Sox3.mouse_HMG_1	16	1	+	1.9451177908259465	1.5112863461048394	GAACTATGACATTGCAG
chr21	24577399	24577400	chr21:24577400:A:G	rs2829172	A	G	a	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr21	24693982	24693983	chr21:24693983:T:G	rs2829266	T	G	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr21	24941856	24941857	chr21:24941857:T:G	rs2829472	T	G	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr21	25080323	25080324	chr21:25080324:G:A	rs73898071	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr21	25333018	25333019	chr21:25333019:T:C	rs7279152	T	C	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr21	25571992	25571993	chr21:25571993:T:G	rs2829801	T	G	T	Sox3.mouse_HMG_1	14	1	+	3.1938272635586444	-3.232821988223353	TAGCAATTCTGTTGTTG
chr21	25836362	25836363	chr21:25836363:A:T	rs2829938	A	T	A	Sox3.mouse_HMG_1	9	1	-	2.589168186534982	1.17122992459045	AAACTATGATATTTTAA
chr21	25882067	25882068	chr21:25882068:A:G	rs45556936	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.1024992745826623	-4.623634202719795	GTGCAATGGTATTTTTT
chr21	25882094	25882095	chr21:25882095:C:G	rs45610338	C	G	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr21	25888112	25888113	chr21:25888113:C:G	rs373958790	C	G	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr21	26077618	26077619	chr21:26077619:C:T	rs117349040	C	T	C	Sox3.mouse_HMG_1	8	1	-	6.2023731332630625	7.228786608273699	AAAAAATGGCATTGATG
chr21	26077646	26077647	chr21:26077647:C:T	rs59737592	C	T	c	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr21	26099393	26099394	chr21:26099394:C:T	rs2830053	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr21	26171644	26171645	chr21:26171645:A:G	rs466433	A	G	A	Sox3.mouse_HMG_1	16	1	-	2.5626996339422856	-1.0390970316786967	GAACAAGGGCAGCGTTT
chr21	26366087	26366088	chr21:26366088:C:T	rs62219377	C	T	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr21	26375519	26375520	chr21:26375520:G:T	rs219710	G	T	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr21	26377556	26377557	chr21:26377557:T:C	rs2830193	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr21	26460964	26460965	chr21:26460965:T:A	rs191997	T	A	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr21	26495739	26495740	chr21:26495740:A:G	rs219633	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr21	26658518	26658519	chr21:26658519:A:G	rs996632	A	G	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr21	26691870	26691871	chr21:26691871:T:C	rs2212809	T	C	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr21	26846923	26846924	chr21:26846924:T:C	rs985049763	T	C	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr21	26919135	26919136	chr21:26919136:A:G	rs1444269	A	G	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr21	27132103	27132104	chr21:27132104:G:A	rs2830716	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr21	27188122	27188123	chr21:27188123:G:A	rs73374980	G	A	a	Sox3.mouse_HMG_1	9	1	-	2.577040917019886	2.5413347921353173	GAGAAATGTCATTGTCT
chr21	27258102	27258103	chr21:27258103:A:T	rs2078299	A	T	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr21	27406398	27406399	chr21:27406399:A:G	rs141290623	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr21	27564664	27564665	chr21:27564665:C:T	rs2831004	C	T	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr21	27630414	27630415	chr21:27630415:T:G	rs141907492	T	G	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr21	27681637	27681638	chr21:27681638:G:A	rs10211858	G	A	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr21	27740343	27740344	chr21:27740344:C:T	rs7281763	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr21	27763598	27763599	chr21:27763599:C:T	rs2831152	C	T	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr21	28110967	28110968	chr21:28110968:A:C	rs1015106	A	C	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr21	28112135	28112136	chr21:28112136:A:C	rs2831507	A	C	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr21	28431337	28431338	chr21:28431338:G:T	rs1350656062	G	T	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr21	28480880	28480881	chr21:28480881:G:A	rs1999317	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr21	28657788	28657789	chr21:28657789:A:G	rs62224132	A	G	A	Sox3.mouse_HMG_1	1	1	+	1.343254555580554	-2.984178787822138	CAACAATGATCTTTTCT
chr21	28684187	28684188	chr21:28684188:T:C	rs75977629	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr21	28744996	28744997	chr21:28744997:C:T	rs11700653	C	T	C	Sox3.mouse_HMG_1	3	1	+	5.384522146841045	-0.5982539712932774	AGACAATTCAATTTTTT
chr21	29166945	29166946	chr21:29166946:T:C	rs28723374	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr21	29175696	29175697	chr21:29175697:T:G	rs14498	T	G	T	Sox3.mouse_HMG_1	12	1	-	3.2262236973963745	2.6079501858116343	AAACAAAACAATAGTTA
chr21	29342953	29342954	chr21:29342954:T:C	rs425989	T	C	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr21	29372848	29372849	chr21:29372849:C:T	rs4817285	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr21	29634101	29634102	chr21:29634102:T:C	rs2008727	T	C	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr21	29679215	29679216	chr21:29679216:C:T	rs8128745	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr21	29892479	29892480	chr21:29892480:A:C	rs2300332	A	C	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr21	29938440	29938441	chr21:29938441:A:T	rs2832496	A	T	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr21	30059224	30059225	chr21:30059225:G:T	rs71321317	G	T	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr21	30400352	30400353	chr21:30400353:T:C	rs2832853	T	C	-	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr21	31337119	31337120	chr21:31337120:C:T	rs2833380	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr21	31420602	31420603	chr21:31420603:G:T	rs7280668	G	T	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr21	31420613	31420614	chr21:31420614:C:T	rs2833404	C	T	T	Sox3.mouse_HMG_1	11	1	-	2.926714717854922	-0.8077627091908248	CAACACTAACAGTGATG
chr21	31461390	31461391	chr21:31461391:A:G	rs2284521	A	G	G	Sox3.mouse_HMG_1	5	1	+	1.584877522492993	-5.141255954809467	AGGCAAAAGAATTGTTT
chr21	31777508	31777509	chr21:31777509:C:T	rs62221571	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr21	31870198	31870199	chr21:31870199:A:G	rs2409421	A	G	A	Sox3.mouse_HMG_1	8	1	+	5.835804963785342	4.809391488774707	AAACAATTATATTTGTT
chr21	31870211	31870212	chr21:31870212:C:T	rs13050102	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr21	31975121	31975122	chr21:31975122:T:C	rs9305481	T	C	C	Sox3.mouse_HMG_1	11	1	+	1.8506349569106453	-4.206821152049708	GAACTATGGTATTATAT
chr21	32136816	32136817	chr21:32136817:G:A	rs78153639	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr21	32192400	32192401	chr21:32192401:C:T	rs78098177	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr21	32214747	32214748	chr21:32214748:A:G	rs7280607	A	G	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr21	32257021	32257022	chr21:32257022:T:C	rs562954374	T	C	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr21	32323990	32323991	chr21:32323991:A:C	rs11700658	A	C	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr21	32426839	32426840	chr21:32426840:G:A	rs2833816	G	A	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr21	33340112	33340113	chr21:33340113:A:T	rs2253923	A	T	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr21	33433783	33433784	chr21:33433784:A:G	rs17882822	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.9566516077915	-1.100804501168853	AAAAAATTAAATTGTGG
chr21	33449383	33449384	chr21:33449384:G:C	rs1044213	G	C	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr21	33644483	33644484	chr21:33644484:A:G	rs74560799	A	G	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr21	33683941	33683942	chr21:33683942:G:A	rs2251854	G	A	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr21	34256576	34256577	chr21:34256577:A:G	rs2834425	A	G	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr21	34540507	34540508	chr21:34540508:C:G	rs58353479	C	G	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr21	34565685	34565686	chr21:34565686:T:C	rs62211864	T	C	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr21	34565725	34565726	chr21:34565726:T:G	rs8130808	T	G	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr21	34594258	34594259	chr21:34594259:C:T	rs2268267	C	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr21	34931251	34931252	chr21:34931252:G:A	rs112522367	G	A	g	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr21	35050858	35050859	chr21:35050859:A:G	rs149949535	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.128464928682262	-3.5976685486201925	AAAGAATAATAGTGCTA
chr21	35085659	35085660	chr21:35085660:C:T	rs28421171	C	T	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr21	35245717	35245718	chr21:35245718:T:C	rs2294161	T	C	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr21	35283680	35283681	chr21:35283681:A:G	rs73901926	A	G	A	Sox3.mouse_HMG_1	9	1	-	8.919327537064577	8.955033661949146	TAACAATGCTAGTGTGA
chr21	35294643	35294644	chr21:35294644:C:G	rs1020285759	C	G	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr21	35314977	35314978	chr21:35314978:A:G	rs2834900	A	G	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr21	35617876	35617877	chr21:35617877:A:T	rs2142034	A	T	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr21	35834090	35834091	chr21:35834091:G:A	rs74276113	G	A	G	Sox3.mouse_HMG_1	7	1	+	14.3019337879554	13.80586346817809	TAACAATGGAATTGTTA
chr21	36189150	36189151	chr21:36189151:A:T	rs13047140	A	T	A	Sox3.mouse_HMG_1	8	1	+	2.5890464884176048	1.7692252499490717	AAACAAAGATATTTTCT
chr21	36355078	36355079	chr21:36355079:G:A	rs137906468	G	A	G	Sox3.mouse_HMG_1	8	1	+	3.5663364714323276	4.592749946442964	TAATAATGGCATCGTTA
chr21	36437205	36437206	chr21:36437206:A:T	rs61472255	A	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr21	36458350	36458351	chr21:36458351:C:T	rs552539331	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr21	36479676	36479677	chr21:36479677:C:G	rs188733	C	G	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr21	36757640	36757641	chr21:36757641:C:A	rs2850103	C	A	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr21	37117452	37117453	chr21:37117453:T:C	rs2040341	T	C	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr21	37463091	37463092	chr21:37463092:G:A	rs2186338	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr21	37564739	37564740	chr21:37564740:G:A	rs140564833	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr21	37564741	37564742	chr21:37564742:C:T	rs1415094897	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr21	37760477	37760478	chr21:37760478:C:T	rs860798	C	T	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr21	38290390	38290391	chr21:38290391:A:G	rs145479902	A	G	A	Sox3.mouse_HMG_1	8	1	+	2.4874205629684045	1.4610070879577715	AAACAATAATAATGGAA
chr21	38443600	38443601	chr21:38443601:A:C	rs9808660	A	C	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr21	38531434	38531435	chr21:38531435:C:G	rs3787914	C	G	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr21	38826218	38826219	chr21:38826219:A:G	rs2836687	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr21	38832159	38832160	chr21:38832160:T:C	rs762386	T	C	C	Sox3.mouse_HMG_1	10	1	-	3.419045854000384	-3.489199304970957	AAATCATAAAAGTGTTT
chr21	38832162	38832163	chr21:38832163:T:C	rs947882315	T	C	T	Sox3.mouse_HMG_1	7	1	-	3.419045854000384	3.9151161737776947	AAATCATAAAAGTGTTT
chr21	38923237	38923238	chr21:38923238:T:C	rs2836758	T	C	C	Sox3.mouse_HMG_1	10	1	-	4.816566654590675	-2.0916785043806647	CAAAAATGACATTCTTG
chr21	38923251	38923252	chr21:38923252:G:A	rs2836759	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr21	39025733	39025734	chr21:39025734:C:A	rs8133785	C	A	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr21	39113006	39113007	chr21:39113007:G:T	rs1882772	G	T	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr21	39556608	39556609	chr21:39556609:A:G	rs2837076	A	G	G	Sox3.mouse_HMG_1	11	1	-	1.5205556414173946	-4.536900467542957	AAGCAACGGTATGGTTT
chr21	39564086	39564087	chr21:39564087:A:C	rs626856	A	C	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr21	39576140	39576141	chr21:39576141:G:A	rs551439	G	A	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr21	39852145	39852146	chr21:39852146:C:A	rs2837258	C	A	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr21	39987953	39987954	chr21:39987954:T:C	rs4816669	T	C	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr21	40178644	40178645	chr21:40178645:G:C	rs74770328	G	C	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr21	40194321	40194322	chr21:40194322:C:T	rs73364154	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr21	40194660	40194661	chr21:40194661:T:C	rs16999473	T	C	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr21	40283340	40283341	chr21:40283341:G:A	chr21:40283341:G:A	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr21	40466035	40466036	chr21:40466036:C:T	rs78664731	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr21	40466921	40466922	chr21:40466922:C:T	rs2837641	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr21	40537407	40537408	chr21:40537408:A:G	rs2837691	A	G	A	Sox3.mouse_HMG_1	9	1	-	7.250406749359101	7.2861128742436705	AAACAATGTTAGTTTTC
chr21	40564294	40564295	chr21:40564295:T:C	rs17000004	T	C	t	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr21	40678957	40678958	chr21:40678958:A:G	rs11088526	A	G	A	Sox3.mouse_HMG_1	8	1	+	4.350951466387222	3.3245379913765873	CAACAATAAAATCATTT
chr21	40840602	40840603	chr21:40840603:G:A	rs75223830	G	A	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr21	40977119	40977120	chr21:40977120:A:G	rs1467753	A	G	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr21	41064404	41064405	chr21:41064405:T:C	rs9305718	T	C	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr21	41101510	41101511	chr21:41101511:A:G	rs1029009	A	G	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr21	41101542	41101543	chr21:41101543:G:A	rs1029010	G	A	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr21	41123775	41123776	chr21:41123776:T:A	rs112671966	T	A	T	Sox3.mouse_HMG_1	12	1	+	3.8219642615933194	-1.766227812039792	TGACAATGACAGTGTCC
chr21	41147428	41147429	chr21:41147429:T:C	rs2837963	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr21	41147461	41147462	chr21:41147462:C:T	rs9982271	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr21	41224909	41224910	chr21:41224910:G:C	rs12329755	G	C	c	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr21	41421933	41421934	chr21:41421934:G:C	rs555956894	G	C	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr21	41926584	41926585	chr21:41926585:G:A	rs193253532	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr21	41926595	41926596	chr21:41926596:A:C	rs140466968	A	C	A	Sox3.mouse_HMG_1	15	1	-	5.228124091020344	0.6617052334143093	AAACAAAGGAATAGTTT
chr21	41997287	41997288	chr21:41997288:T:C	rs148494305	T	C	T	Sox3.mouse_HMG_1	12	1	+	2.191940683727742	-4.01452490149011	TACTAATGAAAGTGTTT
chr21	41997307	41997308	chr21:41997308:G:T	rs6586291	G	T	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr21	42142586	42142587	chr21:42142587:C:T	rs7280633	C	T	T	Sox3.mouse_HMG_1	13	1	-	4.125913617735649	-1.982192172290267	TAACATTAGCAGTGTAT
chr21	42342730	42342731	chr21:42342731:G:A	rs225325	G	A	g	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr21	42342752	42342753	chr21:42342753:A:G	rs691678	A	G	a	Sox3.mouse_HMG_1	12	1	-	5.804666078570529	-0.40179950664732267	TAATAATAATAATGTTT
chr21	42356068	42356069	chr21:42356069:A:G	rs541798	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr21	42356069	42356070	chr21:42356070:G:A	rs691587	G	A	A	Sox3.mouse_HMG_1	0	1	+	7.586027434124168	8.958844099585706	GAACAATTGCAGAGTTG
chr21	43018678	43018679	chr21:43018679:A:G	rs1672136	A	G	A	Sox3.mouse_HMG_1	11	1	-	1.0666377358719343	-4.990818373088419	GCCCAATGACATTGTCA
chr21	43027100	43027101	chr21:43027101:C:T	rs234723	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr21	43267576	43267577	chr21:43267577:G:A	rs28620758	G	A	.	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr21	43267582	43267583	chr21:43267583:A:C	rs28758875	A	C	.	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr21	43311739	43311740	chr21:43311740:T:C	rs637345	T	C	.	Sox3.mouse_HMG_1	5	1	-	3.1593799221122256	-3.5667535551902323	ATCCAATGACAGTGTTC
chr21	43893424	43893425	chr21:43893425:A:G	rs118075654	A	G	a	Sox3.mouse_HMG_1	5	1	+	0.7455309815479388	-5.9806024957545185	CAGCAATAACGCTGTTT
chr21	43893428	43893429	chr21:43893429:C:G	rs62228699	C	G	g	Sox3.mouse_HMG_1	9	1	+	0.7455309815479388	-5.291113025002493	CAGCAATAACGCTGTTT
chr21	44332412	44332413	chr21:44332413:T:C	rs3761393	T	C	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr21	44602985	44602986	chr21:44602986:T:C	rs1211123	T	C	T	Sox3.mouse_HMG_1	6	1	+	2.858695431696695	-3.787395337932226	AAGCAATGACAATGCTG
chr21	44659611	44659612	chr21:44659612:C:T	rs112720679	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr21	44761093	44761094	chr21:44761094:A:G	rs2838674	A	G	A	Sox3.mouse_HMG_1	1	1	+	4.458438897834744	0.13100555443205153	GAACAGTTACATTGCTT
chr21	44867252	44867253	chr21:44867253:G:T	rs73238101	G	T	G	Sox3.mouse_HMG_1	3	1	-	3.836895538916533	-2.887817923947165	GAACAGTGTTAGTGATT
chr21	44878701	44878702	chr21:44878702:A:C	rs4818983	A	C	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr21	44885997	44885998	chr21:44885998:C:A	rs117989670	C	A	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr21	44908402	44908403	chr21:44908403:T:A	rs10854466	T	A	A	Sox3.mouse_HMG_1	8	1	-	4.159333296973021	3.3395120585044866	TAATAATAATATTATTA
chr21	45021573	45021574	chr21:45021574:G:A	rs71324403	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr21	45050988	45050989	chr21:45050989:G:A	rs35117020	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr21	45185778	45185779	chr21:45185779:C:T	rs1556317	C	T	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr21	45419709	45419710	chr21:45419710:G:T	rs2838916	G	T	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr21	45525844	45525845	chr21:45525845:C:T	rs374164733	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr21	45594742	45594743	chr21:45594743:A:G	rs11089016	A	G	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr21	45594750	45594751	chr21:45594751:C:G	rs2838963	C	G	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr21	45609308	45609309	chr21:45609309:G:A	rs112373318	G	A	G	Sox3.mouse_HMG_1	3	1	-	0.7560026465881223	-5.2267734715462	AAACATTGACAGTGCCT
chr21	45742406	45742407	chr21:45742407:C:T	rs4819147	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr21	45803039	45803040	chr21:45803040:G:A	rs914242	G	A	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr21	46072060	46072061	chr21:46072061:A:G	rs2839099	A	G	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr21	46475393	46475394	chr21:46475394:G:A	rs2839275	G	A	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr22	10716649	10716650	chr22:10716650:C:T	rs879185960	C	T	.	Sox3.mouse_HMG_1	11	1	-	-0.36114485745384306	-4.095622284499591	AAACGATATCTGTGTAT
chr22	11036978	11036979	chr22:11036979:A:G	rs1308964339	A	G	.	Sox3.mouse_HMG_1	4	1	+	-0.0755483226171228	-6.887873414594362	GGCCAATGTCATTTTTG
chr22	11630331	11630332	chr22:11630332:A:G	rs1440071469	A	G	.	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr22	12435701	12435702	chr22:12435702:T:A	rs1386210890	T	A	.	Sox3.mouse_HMG_1	5	1	-	2.4529793205951296	-4.455475713501279	AAACAATCTTTTTGTAG
chr22	15747880	15747881	chr22:15747881:A:G	rs375440887	A	G	a	Sox3.mouse_HMG_1	16	1	-	-0.28702502247915296	-3.888821688100135	TGACTATGCCAGTGTGT
chr22	15786271	15786272	chr22:15786272:T:C	rs1811977	T	C	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr22	16659132	16659133	chr22:16659133:G:C	rs11703273	G	C	.	Sox3.mouse_HMG_1	14	1	-	-1.5196753773459255	-1.8364337138792157	CAACAATGGCAGGGCCT
chr22	16722943	16722944	chr22:16722944:A:C	rs5748582	A	C	.	Sox3.mouse_HMG_1	0	1	-	2.5830208970760977	3.233358556930803	TAACAGTTACATTTTTG
chr22	16916075	16916076	chr22:16916076:G:C	rs16981836	G	C	.	Sox3.mouse_HMG_1	4	1	-	0.4612299815925651	0.3742186046029359	AAACCATGAAAATGTCA
chr22	16917921	16917922	chr22:16917922:A:G	rs13058496	A	G	.	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr22	16969874	16969875	chr22:16969875:A:G	rs61738794	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.635801984002347	-2.010288785626572	GAACAATAGTGGTGTTC
chr22	17008655	17008656	chr22:17008656:C:T	rs5746961	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr22	17153159	17153160	chr22:17153160:A:G	rs5994180	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.4780035252925563	-4.2481299520099	TAACAAAGGCATTTTTA
chr22	17195543	17195544	chr22:17195544:A:G	rs76837825	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr22	17225544	17225545	chr22:17225545:A:G	rs4417796	A	G	-	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr22	17381185	17381186	chr22:17381186:C:T	rs11089174	C	T	T	Sox3.mouse_HMG_1	13	1	-	6.14567648712219	0.03757069709627392	AATCAATGCCAGTGTAA
chr22	17381713	17381714	chr22:17381714:G:A	rs5747086	G	A	G	Sox3.mouse_HMG_1	8	1	+	0.4529475489750261	1.479361023985662	CAGCAGTGGTATTGTGA
chr22	17381715	17381716	chr22:17381716:A:G	rs891748699	A	G	A	Sox3.mouse_HMG_1	10	1	+	0.4529475489750261	-6.455297609996313	CAGCAGTGGTATTGTGA
chr22	17616281	17616282	chr22:17616282:G:A	rs12162848	G	A	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr22	17625567	17625568	chr22:17625568:G:C	rs5747290	G	C	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr22	17707547	17707548	chr22:17707548:T:C	rs73378763	T	C	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr22	17730290	17730291	chr22:17730291:G:A	rs8919	G	A	G	Sox3.mouse_HMG_1	2	1	+	-0.5373319811801984	3.8706029978002614	AAGAAATGCAACTGTTG
chr22	17924973	17924974	chr22:17924974:C:T	rs75328607	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr22	17943820	17943821	chr22:17943821:C:T	chr22:17943821:C:T	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr22	17966441	17966442	chr22:17966442:C:T	rs4819477	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr22	17966446	17966447	chr22:17966447:C:A	rs79372990	C	A	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr22	19022635	19022636	chr22:19022636:T:C	rs62230772	T	C	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr22	19048332	19048333	chr22:19048333:T:C	rs73384864	T	C	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr22	19063364	19063365	chr22:19063365:A:G	rs9617765	A	G	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr22	19065892	19065893	chr22:19065893:G:T	rs2238749	G	T	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr22	19099254	19099255	chr22:19099255:A:G	rs73388723	A	G	A	Sox3.mouse_HMG_1	13	1	-	0.20113339288939502	0.46214721825901406	AAGCAATGCCAGTTTGA
chr22	19226704	19226705	chr22:19226705:T:G	chr22:19226705:T:G	T	G	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr22	19359904	19359905	chr22:19359905:T:G	rs79839027	T	G	T	Sox3.mouse_HMG_1	16	1	+	1.9238068515249531	0.9579552107678406	CAAAGATGGCAGTGTTT
chr22	19362066	19362067	chr22:19362067:G:C	rs916594	G	C	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr22	19362071	19362072	chr22:19362072:G:A	rs41277615	G	A	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr22	19497876	19497877	chr22:19497877:A:G	rs73162616	A	G	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr22	19529966	19529967	chr22:19529967:C:T	rs2871031	C	T	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr22	19555027	19555028	chr22:19555028:T:G	rs5748284	T	G	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr22	19571683	19571684	chr22:19571684:G:T	rs141880630	G	T	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr22	19740491	19740492	chr22:19740492:G:C	rs5748414	G	C	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr22	19785784	19785785	chr22:19785785:T:C	rs5993830	T	C	C	Sox3.mouse_HMG_1	10	1	-	0.4865362981996172	-6.421708860771722	GAACATTGGCATTCTCT
chr22	19875151	19875152	chr22:19875152:C:T	rs13057441	C	T	C	Sox3.mouse_HMG_1	9	1	+	0.7889214310632457	0.7532153061786779	GAACAAAGCCGGTGTTG
chr22	20015535	20015536	chr22:20015536:C:T	rs62223726	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr22	20411247	20411248	chr22:20411248:A:C	rs68039353	A	C	A	Sox3.mouse_HMG_1	2	1	+	4.316845013822689	-2.1084898658986213	AAACAATAAAAGTCTCA
chr22	20943671	20943672	chr22:20943672:T:C	rs4820673	T	C	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr22	21552215	21552216	chr22:21552216:G:A	rs532484714	G	A	g	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr22	21773200	21773201	chr22:21773201:C:T	rs4821263	C	T	C	Sox3.mouse_HMG_1	7	1	-	-0.17255464406759102	-0.668624963844901	AAGTAGTGCCAGTGTTT
chr22	21908028	21908029	chr22:21908029:A:G	rs8143081	A	G	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr22	22060418	22060419	chr22:22060419:G:A	rs5756711	G	A	a	Sox3.mouse_HMG_1	3	1	-	4.898936972753466	-1.0838391453808554	CAGCAATGGAAATGTTG
chr22	22131255	22131256	chr22:22131256:A:C	chr22:22131256:A:C	A	C	.	Sox3.mouse_HMG_1	7	1	+	1.6941421504876333	-3.4304796646598286	AAACAACACAATTGAAT
chr22	22145000	22145001	chr22:22145001:A:G	rs16984390	A	G	.	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr22	22201042	22201043	chr22:22201043:G:A	rs11912786	G	A	G	Sox3.mouse_HMG_1	1	1	-	-0.7939635349422358	-0.04644756495532559	ACACAATGCCAGGGTGG
chr22	22215057	22215058	chr22:22215058:T:A	rs5750741	T	A	.	Sox3.mouse_HMG_1	11	1	+	3.997866187662264	-1.8645899062443638	GAACAGCAACATTGTTG
chr22	22219783	22219784	chr22:22219784:A:G	rs147109501	A	G	.	Sox3.mouse_HMG_1	15	1	-	10.792973280993925	6.490471483198441	AAACATTTACATTGTTG
chr22	22485077	22485078	chr22:22485078:A:G	rs398182	A	G	a	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr22	22490314	22490315	chr22:22490315:A:C	rs5758484	A	C	c	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr22	22582849	22582850	chr22:22582850:G:T	rs6002845	G	T	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr22	22708255	22708256	chr22:22708256:A:C	rs2330155	A	C	.	Sox3.mouse_HMG_1	1	1	+	-0.6515763390853935	-6.289431235346511	CAAAGATGACAGTGTTC
chr22	22710411	22710412	chr22:22710412:G:A	rs141906942	G	A	.	Sox3.mouse_HMG_1	2	1	+	-1.4252912639767024	2.982643715003759	GAGCAAGGACTGTGTTT
chr22	22710424	22710425	chr22:22710425:T:A	rs5759404	T	A	.	Sox3.mouse_HMG_1	15	1	+	-1.4252912639767024	-4.922134885769173	GAGCAAGGACTGTGTTT
chr22	22710438	22710439	chr22:22710439:G:A	rs5759405	G	A	.	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr22	22752750	22752751	chr22:22752751:A:G	rs73162903	A	G	.	Sox3.mouse_HMG_1	5	1	+	0.3158031359602435	-6.410330341342211	AAAAAATGTTACTGATG
chr22	22783795	22783796	chr22:22783796:G:C	rs62220426	G	C	.	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr22	22902088	22902089	chr22:22902089:T:C	rs4822340	T	C	.	Sox3.mouse_HMG_1	5	1	-	-0.4358971442912719	-7.162030621593727	AGACCATGACATTGACT
chr22	22939432	22939433	chr22:22939433:T:C	rs2188131	T	C	.	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr22	23009322	23009323	chr22:23009323:C:T	rs4589858	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr22	23014778	23014779	chr22:23014779:G:A	rs5996447	G	A	c	Sox3.mouse_HMG_1	9	1	-	1.084510149244156	1.0488040243595864	AAACAATTACGTTATGT
chr22	23041682	23041683	chr22:23041683:A:G	rs4434089	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr22	23353216	23353217	chr22:23353217:T:C	rs4820550	T	C	t	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr22	23510306	23510307	chr22:23510307:A:G	rs4822422	A	G	a	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr22	23525573	23525574	chr22:23525574:G:C	rs147354058	G	C	g	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr22	23651430	23651431	chr22:23651431:G:A	rs8138605	G	A	g	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr22	23729689	23729690	chr22:23729690:G:A	rs11090284	G	A	-	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr22	23950173	23950174	chr22:23950174:C:G	rs1297086417	C	G	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr22	23950175	23950176	chr22:23950176:T:G	rs1289974533	T	G	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr22	24092506	24092507	chr22:24092507:C:T	rs738808	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr22	24208123	24208124	chr22:24208124:A:G	chr22:24208124:A:G	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr22	24285610	24285611	chr22:24285611:T:C	rs5751838	T	C	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr22	24445566	24445567	chr22:24445567:T:C	rs562548070	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr22	24474095	24474096	chr22:24474096:T:A	rs4822493	T	A	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr22	24478728	24478729	chr22:24478729:T:C	rs4820590	T	C	T	Sox3.mouse_HMG_1	9	1	+	-0.3086714655071677	-0.272965340622599	CAGCATTAATATTGCTG
chr22	24686216	24686217	chr22:24686217:G:T	rs9608322	G	T	g	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr22	24728960	24728961	chr22:24728961:C:G	rs738824	C	G	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr22	24966009	24966010	chr22:24966010:T:C	rs5996800	T	C	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr22	25085247	25085248	chr22:25085248:A:G	rs6004430	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.583159635924388	-3.062931133704531	AAACAATGGCTTTGAAT
chr22	25197690	25197691	chr22:25197691:A:G	rs763281	A	G	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr22	25513236	25513237	chr22:25513237:C:T	rs641296	C	T	C	Sox3.mouse_HMG_1	7	1	-	-0.7943791918453011	-1.2904495116226122	CAGCAATGGCATCTTTA
chr22	25661298	25661299	chr22:25661299:T:C	rs77015463	T	C	T	Sox3.mouse_HMG_1	0	1	+	3.735550020808199	4.169112833772245	TAACCATGGCAGTGTGT
chr22	25661330	25661331	chr22:25661331:G:A	rs115031980	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr22	25698995	25698996	chr22:25698996:G:A	rs10483122	G	A	G	Sox3.mouse_HMG_1	12	1	-	0.1848149674625028	6.391280552680354	TAGTAATGACATCGTTA
chr22	25778010	25778011	chr22:25778011:A:C	rs984690579	A	C	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr22	25909714	25909715	chr22:25909715:G:A	rs2285200	G	A	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr22	25910195	25910196	chr22:25910196:T:C	rs2331194	T	C	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr22	25970019	25970020	chr22:25970020:A:G	rs114921896	A	G	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr22	26024884	26024885	chr22:26024885:T:C	rs28606436	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr22	26109598	26109599	chr22:26109599:A:G	rs134714	A	G	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr22	26269132	26269133	chr22:26269133:A:G	rs667270	A	G	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr22	26325813	26325814	chr22:26325814:C:T	rs62225710	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr22	26398725	26398726	chr22:26398726:C:T	rs1941121	C	T	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr22	26645345	26645346	chr22:26645346:C:T	rs190325753	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr22	26645378	26645379	chr22:26645379:C:T	rs866111829	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr22	26650697	26650698	chr22:26650698:A:T	rs4822760	A	T	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr22	26926253	26926254	chr22:26926254:G:C	rs5761836	G	C	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr22	26942987	26942988	chr22:26942988:T:A	rs4822825	T	A	T	Sox3.mouse_HMG_1	12	1	+	1.1997179948789007	-4.388474078754211	AGAAAATAGCAGTGTCT
chr22	27038009	27038010	chr22:27038010:C:G	rs5752468	C	G	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr22	27248987	27248988	chr22:27248988:A:G	rs552212	A	G	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr22	27349663	27349664	chr22:27349664:C:A	rs533794	C	A	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr22	27406469	27406470	chr22:27406470:A:G	rs16984531	A	G	A	Sox3.mouse_HMG_1	4	1	+	3.46406328537121	-3.3482618066060255	AAACAATGGCAATGAGT
chr22	27513144	27513145	chr22:27513145:A:G	rs5762222	A	G	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr22	27617163	27617164	chr22:27617164:T:C	rs9608631	T	C	T	Sox3.mouse_HMG_1	16	1	-	1.0405928720669	1.4744243167880071	TAAAAATGCAAGTGTCA
chr22	27727697	27727698	chr22:27727698:G:A	rs5997299	G	A	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr22	27865700	27865701	chr22:27865701:C:T	rs147919520	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr22	28009176	28009177	chr22:28009177:G:A	rs16985863	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr22	28076316	28076317	chr22:28076317:A:G	rs9625395	A	G	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr22	28142781	28142782	chr22:28142782:A:T	rs135641	A	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr22	28422041	28422042	chr22:28422042:A:G	rs16986400	A	G	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr22	28424882	28424883	chr22:28424883:A:G	rs16986405	A	G	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr22	28435678	28435679	chr22:28435679:T:C	rs192952352	T	C	t	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr22	28440735	28440736	chr22:28440736:A:G	rs528661785	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr22	28806951	28806952	chr22:28806952:A:G	rs78548788	A	G	A	Sox3.mouse_HMG_1	6	1	-	1.3204256204484852	-5.325665149180435	CAACCATGAAAGAGTTA
chr22	28810220	28810221	chr22:28810221:T:C	rs5762816	T	C	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr22	28985163	28985164	chr22:28985164:C:G	rs5762935	C	G	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr22	29095639	29095640	chr22:29095640:G:A	rs16987052	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr22	29160750	29160751	chr22:29160751:G:A	rs132304	G	A	a	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr22	29276303	29276304	chr22:29276304:A:G	rs9613855	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr22	29282287	29282288	chr22:29282288:T:C	rs8143120	T	C	T	Sox3.mouse_HMG_1	0	1	-	0.8654497720842804	-0.5073668933772573	AAGCAATGTTATGATTA
chr22	29440936	29440937	chr22:29440937:T:C	rs5763240	T	C	c	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr22	29559262	29559263	chr22:29559263:A:G	rs468224	A	G	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr22	29661584	29661585	chr22:29661585:A:G	rs2857641	A	G	a	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr22	29883974	29883975	chr22:29883975:A:G	rs1268546086	A	G	A	Sox3.mouse_HMG_1	8	1	+	2.34451699339679	1.3181035183861551	AAATGATTACAGTGTTA
chr22	30080571	30080572	chr22:30080572:A:T	rs58952888	A	T	A	Sox3.mouse_HMG_1	11	1	-	0.2945125136203911	-5.567943580286237	AGAAAAAAAAATTGTTT
chr22	30222899	30222900	chr22:30222900:C:A	rs11089436	C	A	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr22	30458675	30458676	chr22:30458676:G:A	rs4820851	G	A	g	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr22	30468804	30468805	chr22:30468805:C:T	rs2269962	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr22	30468829	30468830	chr22:30468830:A:G	rs2269963	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.9949540156431267	-2.651136753985793	AGACAATAGCACTGTCT
chr22	30592074	30592075	chr22:30592075:T:C	chr22:30592075:T:C	T	C	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr22	30734549	30734550	chr22:30734550:G:A	rs4820899	G	A	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr22	30830915	30830916	chr22:30830916:G:A	rs77486570	G	A	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr22	30924683	30924684	chr22:30924684:C:T	rs775047848	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr22	31333570	31333571	chr22:31333571:A:C	rs34128648	A	C	A	Sox3.mouse_HMG_1	7	1	-	9.143768198580394	10.68131730332255	AAACAATTGCAGTTTTT
chr22	31451591	31451592	chr22:31451592:C:T	rs762746787	C	T	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr22	31511440	31511441	chr22:31511441:C:G	rs5998021	C	G	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr22	31530747	31530748	chr22:31530748:T:G	rs141211872	T	G	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr22	31530756	31530757	chr22:31530757:A:G	rs5998031	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr22	31633364	31633365	chr22:31633365:C:G	rs111697884	C	G	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr22	31633379	31633380	chr22:31633380:C:A	rs113992242	C	A	C	Sox3.mouse_HMG_1	2	1	-	2.6128620777947162	1.118710320818412	AAGCAATGCCAGTGGAT
chr22	31681134	31681135	chr22:31681135:C:G	rs529748647	C	G	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr22	31724041	31724042	chr22:31724042:T:C	rs131235	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr22	31947520	31947521	chr22:31947521:A:G	rs188311886	A	G	A	Sox3.mouse_HMG_1	11	1	-	2.9323749209536514	-3.1250811880067006	AGGCAAGACCATTGTTT
chr22	32020240	32020241	chr22:32020241:G:A	rs74924328	G	A	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr22	32064006	32064007	chr22:32064007:A:G	rs9609420	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.0626462497152223	-5.663487227587233	GGACAATGTCCCTGTTT
chr22	32540544	32540545	chr22:32540545:A:G	rs4821072	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr22	32591307	32591308	chr22:32591308:G:A	rs111613711	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr22	32603781	32603782	chr22:32603782:C:T	rs16990827	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr22	32620226	32620227	chr22:32620227:G:C	rs73399282	G	C	G	Sox3.mouse_HMG_1	4	1	-	-0.991019293539418	-1.0780306705290472	GAACCATGGCATTTTCA
chr22	32650549	32650550	chr22:32650550:C:G	rs4373007	C	G	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr22	32693552	32693553	chr22:32693553:G:A	rs5994604	G	A	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr22	32693561	32693562	chr22:32693562:G:A	rs5994605	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr22	32736592	32736593	chr22:32736593:G:A	rs5754240	G	A	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr22	32744812	32744813	chr22:32744813:C:T	rs5998611	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr22	32885067	32885068	chr22:32885068:T:C	rs35346738	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.451538360187933	-4.274595117114526	ACACTATGTAAGTGTTA
chr22	32977340	32977341	chr22:32977341:G:A	rs73162032	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr22	32998081	32998082	chr22:32998082:C:T	rs133931	C	T	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr22	33035178	33035179	chr22:33035179:G:A	rs8138938	G	A	A	Sox3.mouse_HMG_1	7	1	+	6.0321835270299555	5.5361132072526456	TAACAATGATAATGATG
chr22	33273225	33273226	chr22:33273226:T:C	rs11544101	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr22	33563756	33563757	chr22:33563757:G:A	rs62227071	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr22	33674686	33674687	chr22:33674687:A:G	rs4821171	A	G	G	Sox3.mouse_HMG_1	14	1	-	-1.3507774906212333	-7.46066840586994	GACCAATGGGAGTGTGT
chr22	33746705	33746706	chr22:33746706:T:C	rs118097660	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr22	33792958	33792959	chr22:33792959:T:C	rs57936677	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr22	33849149	33849150	chr22:33849150:A:T	rs2283952	A	T	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr22	34406633	34406634	chr22:34406634:A:G	rs5749843	A	G	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr22	34881046	34881047	chr22:34881047:A:G	rs5755393	A	G	G	Sox3.mouse_HMG_1	14	1	-	0.5871336201513727	-5.522757295097335	GCAAAATATCATTGTGT
chr22	35104060	35104061	chr22:35104061:C:T	rs62241691	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr22	35378926	35378927	chr22:35378927:C:T	rs17882950	C	T	c	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr22	35397924	35397925	chr22:35397925:A:G	rs116786363	A	G	A	Sox3.mouse_HMG_1	6	1	-	0.09601380646830748	-6.550076963160612	AAACACTAACAGTTTCT
chr22	35697452	35697453	chr22:35697453:C:G	rs5995144	C	G	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr22	35876589	35876590	chr22:35876590:G:A	rs10483192	G	A	A	Sox3.mouse_HMG_1	8	1	+	-0.3259709642768343	0.7004425107338015	GAAAAAGGGTATTGTAG
chr22	35910335	35910336	chr22:35910336:C:T	rs145516367	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr22	36176141	36176142	chr22:36176142:A:G	chr22:36176142:A:G	A	G	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr22	36363374	36363375	chr22:36363375:G:C	rs113995137	G	C	G	Sox3.mouse_HMG_1	13	1	+	2.5925035654873576	-3.5156022245385583	AAATAACTGAATTGTTG
chr22	36493882	36493883	chr22:36493883:A:G	rs2281087	A	G	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr22	36666164	36666165	chr22:36666165:G:C	rs9610559	G	C	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr22	36682912	36682913	chr22:36682913:A:T	rs5756289	A	T	a	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr22	36734566	36734567	chr22:36734567:A:G	rs147897770	A	G	A	Sox3.mouse_HMG_1	15	1	-	1.6450399636565263	-2.657461834138957	AATCAATGTCAGTCTTC
chr22	36856875	36856876	chr22:36856876:C:T	rs4821542	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr22	37108116	37108117	chr22:37108117:A:C	rs228913	A	C	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr22	37197458	37197459	chr22:37197459:G:A	rs78728597	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr22	37346230	37346231	chr22:37346231:G:A	rs933242	G	A	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr22	37398228	37398229	chr22:37398229:T:C	rs5750428	T	C	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr22	37512302	37512303	chr22:37512303:T:G	chr22:37512303:T:G	T	G	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr22	37627717	37627718	chr22:37627718:C:A	rs112284215	C	A	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr22	37863752	37863753	chr22:37863753:A:G	chr22:37863753:A:G	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr22	38171384	38171385	chr22:38171385:A:T	rs35526737	A	T	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr22	38267812	38267813	chr22:38267813:A:G	rs135720	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr22	38389501	38389502	chr22:38389502:G:C	rs138360	G	C	g	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr22	38481576	38481577	chr22:38481577:G:A	rs116975602	G	A	G	Sox3.mouse_HMG_1	7	1	+	-0.7335942479362287	-1.2296645677135396	CCACAATGCTTGTGTTC
chr22	38709942	38709943	chr22:38709943:T:C	rs2284073	T	C	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr22	39085181	39085182	chr22:39085182:C:T	rs2413570	C	T	c	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr22	39237561	39237562	chr22:39237562:T:C	rs76749832	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr22	39266697	39266698	chr22:39266698:C:T	rs11089938	C	T	C	Sox3.mouse_HMG_1	6	1	+	5.4424217317995165	12.088512501428434	TAACAACGATACTGTTT
chr22	39298119	39298120	chr22:39298120:G:A	rs9611138	G	A	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr22	39317082	39317083	chr22:39317083:G:C	rs190874030	G	C	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr22	39317099	39317100	chr22:39317100:C:T	rs470081	C	T	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr22	39531613	39531614	chr22:39531614:C:T	rs17001283	C	T	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr22	40058064	40058065	chr22:40058065:T:G	rs7291691	T	G	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr22	40158003	40158004	chr22:40158004:T:G	rs6001807	T	G	G	Sox3.mouse_HMG_1	12	1	+	2.13503377977385	-4.433094290893773	GAAAAATACTGTTGTTA
chr22	40175494	40175495	chr22:40175495:T:C	rs6001826	T	C	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr22	40213644	40213645	chr22:40213645:A:G	rs74893831	A	G	A	Sox3.mouse_HMG_1	16	1	+	3.747843499314393	4.1816749440355006	TAACAATCACAGTGATA
chr22	40323731	40323732	chr22:40323732:G:C	rs12485008	G	C	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr22	40361223	40361224	chr22:40361224:A:C	rs8135371	A	C	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr22	40765044	40765045	chr22:40765045:C:G	rs5758065	C	G	G	Sox3.mouse_HMG_1	9	1	+	0.8843855420168303	-5.152258464533602	GAACAATGACATACATG
chr22	41184708	41184709	chr22:41184709:C:T	rs4408817	C	T	c	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr22	41201446	41201447	chr22:41201447:A:G	rs192117100	A	G	A	Sox3.mouse_HMG_1	1	1	+	3.9495594328242674	-0.3778739105784242	GAACAGTAACAGTGTGG
chr22	41287083	41287084	chr22:41287084:G:T	rs2179745	G	T	G	Sox3.mouse_HMG_1	8	1	+	4.839586057587603	5.046178294129705	AGATAATAGTATTGTAT
chr22	41816544	41816545	chr22:41816545:G:A	rs5758482	G	A	G	Sox3.mouse_HMG_1	8	1	-	0.4172618020771993	0.7300010269877416	AAACAATCCTAGGGTCT
chr22	41944577	41944578	chr22:41944578:T:C	rs1023499	T	C	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr22	41966555	41966556	chr22:41966556:A:G	rs4822075	A	G	A	Sox3.mouse_HMG_1	5	1	+	-0.4299424254490745	-7.15607590275153	CCACAATGGTTTTGTGG
chr22	41983808	41983809	chr22:41983809:C:T	rs5751194	C	T	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr22	41983810	41983811	chr22:41983811:G:A	rs181610350	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr22	42022105	42022106	chr22:42022106:T:A	rs9607869	T	A	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr22	42178251	42178252	chr22:42178252:G:A	rs148249186	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr22	42340390	42340391	chr22:42340391:C:A	rs73886046	C	A	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr22	42507677	42507678	chr22:42507678:T:C	rs2413697	T	C	t	Sox3.mouse_HMG_1	10	1	-	2.0756728123633383	-4.832572346608001	AAACAATTACAATGGCT
chr22	42780166	42780167	chr22:42780167:T:C	rs925577509	T	C	T	Sox3.mouse_HMG_1	11	1	+	0.6714695716601808	-5.385986537300172	AAACAAAAACATTGGCA
chr22	42933756	42933757	chr22:42933757:C:T	rs17003423	C	T	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr22	42979134	42979135	chr22:42979135:T:C	rs4820499	T	C	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr22	43002955	43002956	chr22:43002956:C:T	rs738378	C	T	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr22	43400924	43400925	chr22:43400925:T:C	rs113748591	T	C	t	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr22	43401056	43401057	chr22:43401057:C:A	rs5759317	C	A	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr22	43441295	43441296	chr22:43441296:A:G	rs135059	A	G	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr22	43745386	43745387	chr22:43745387:C:T	rs17490800	C	T	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr22	43745387	43745388	chr22:43745388:G:A	rs184343603	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr22	43745392	43745393	chr22:43745393:C:T	rs10483220	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr22	43827358	43827359	chr22:43827359:T:C	rs74924556	T	C	T	Sox3.mouse_HMG_1	8	1	+	2.1619386977656565	1.8491994728551142	AAAAATTATCAGTGTTG
chr22	44126952	44126953	chr22:44126953:C:T	rs133909	C	T	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr22	44221762	44221763	chr22:44221763:T:C	rs139236	T	C	T	Sox3.mouse_HMG_1	12	1	+	-0.2963127044403927	-6.502778289658245	AATCAACAGCAGTGTCT
chr22	44261223	44261224	chr22:44261224:C:T	rs34210864	C	T	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr22	44357627	44357628	chr22:44357628:C:T	rs713695	C	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr22	44368384	44368385	chr22:44368385:G:A	rs113446265	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr22	44368404	44368405	chr22:44368405:T:C	rs4597647	T	C	T	Sox3.mouse_HMG_1	9	1	-	1.121150524700663	-3.4618490950206686	GAAAATTAAAAGTGTTT
chr22	44416155	44416156	chr22:44416156:G:A	rs135938	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr22	44537196	44537197	chr22:44537197:T:A	rs6007188	T	A	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr22	44622566	44622567	chr22:44622567:A:C	rs11705508	A	C	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr22	44674292	44674293	chr22:44674293:T:G	rs114982235	T	G	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr22	44728469	44728470	chr22:44728470:C:T	rs743895	C	T	c	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr22	44821140	44821141	chr22:44821141:G:T	rs5765034	G	T	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr22	44929093	44929094	chr22:44929094:G:A	rs136686	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr22	45010968	45010969	chr22:45010969:A:G	rs116860341	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr22	45170478	45170479	chr22:45170479:T:C	rs5766503	T	C	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr22	45225273	45225274	chr22:45225274:G:A	rs142396679	G	A	G	Sox3.mouse_HMG_1	8	1	-	-0.16704986812317546	0.14568935678736772	GGACAGTGCCTTTGTTT
chr22	45225287	45225288	chr22:45225288:G:C	rs9615068	G	C	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr22	45337317	45337318	chr22:45337318:T:C	rs16993867	T	C	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr22	45605562	45605563	chr22:45605563:A:T	rs5764807	A	T	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr22	45717830	45717831	chr22:45717831:G:C	rs138155	G	C	C	Sox3.mouse_HMG_1	11	1	+	4.694359454218645	0.7648820121191715	AATTAATAATAGTGTTG
chr22	45775415	45775416	chr22:45775416:C:T	rs73444654	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr22	46035374	46035375	chr22:46035375:G:T	rs117242626	G	T	g	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr22	46035393	46035394	chr22:46035394:C:A	rs76725535	C	A	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr22	46068087	46068088	chr22:46068088:T:C	rs541726002	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr22	46084369	46084370	chr22:46084370:A:G	rs73456704	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr22	46230534	46230535	chr22:46230535:C:T	rs11090818	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr22	46744592	46744593	chr22:46744593:C:A	rs17761944	C	A	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr22	46750477	46750478	chr22:46750478:C:T	rs4823572	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr22	46948312	46948313	chr22:46948313:T:C	rs136068	T	C	t	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr22	46958106	46958107	chr22:46958107:G:C	rs6009070	G	C	C	Sox3.mouse_HMG_1	13	1	+	3.066564526484998	-3.041541263540918	GAGCAGTTACAGTGTTG
chr22	46998241	46998242	chr22:46998242:C:T	rs9627641	C	T	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr22	47030575	47030576	chr22:47030576:C:T	rs138586583	C	T	C	Sox3.mouse_HMG_1	7	1	-	3.0019909644673146	2.5059206446900046	AGGCAACGTTATTGTTG
chr22	47064756	47064757	chr22:47064757:A:T	rs4492	A	T	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr22	47189623	47189624	chr22:47189624:G:A	rs112545119	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr22	47236923	47236924	chr22:47236924:A:T	rs4823621	A	T	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr22	47355206	47355207	chr22:47355207:T:C	rs4823633	T	C	C	Sox3.mouse_HMG_1	2	1	-	-0.9232805068197154	-5.331215485800176	GAACAGTGGGATTGTGA
chr22	48057773	48057774	chr22:48057774:A:C	rs117294	A	C	C	Sox3.mouse_HMG_1	4	1	+	1.4630690209858397	-5.262244694001766	CAGCAATACAAGGGTTG
chr22	48176679	48176680	chr22:48176680:G:A	rs118093288	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr22	48225909	48225910	chr22:48225910:C:T	rs5768453	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr22	48272221	48272222	chr22:48272222:A:G	rs133590	A	G	G	Sox3.mouse_HMG_1	5	1	+	2.5093630617332656	-4.216770415569189	ACACAATGCTATTGGAG
chr22	48303804	48303805	chr22:48303805:C:T	rs62223851	C	T	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr22	48303808	48303809	chr22:48303809:C:G	rs737607	C	G	C	Sox3.mouse_HMG_1	3	1	+	1.389916490978996	-5.517118528678657	GAACAATTTTTGTATTT
chr22	48380059	48380060	chr22:48380060:A:G	rs130767	A	G	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr22	48406771	48406772	chr22:48406772:A:T	rs130807	A	T	-	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr22	48478497	48478498	chr22:48478498:C:T	rs13056230	C	T	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr22	48485495	48485496	chr22:48485496:G:A	rs9615908	G	A	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr22	48502068	48502069	chr22:48502069:G:A	rs6008741	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr22	48682688	48682689	chr22:48682689:G:C	rs2337489	G	C	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr22	48732210	48732211	chr22:48732211:G:T	rs6010502	G	T	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr22	48802323	48802324	chr22:48802324:T:C	rs73179508	T	C	t	Sox3.mouse_HMG_1	8	1	-	1.83733671298523	0.810923237974594	GAACCATTATAGGGTTT
chr22	48951107	48951108	chr22:48951108:G:A	rs5770432	G	A	G	Sox3.mouse_HMG_1	15	1	-	3.7538182546966823	8.056320052492167	CAACATTAGCAGTGTCT
chr22	49076969	49076970	chr22:49076970:G:C	rs1569787	G	C	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr22	49077407	49077408	chr22:49077408:C:A	rs5769396	C	A	C	Sox3.mouse_HMG_1	3	1	+	2.8584595998814555	-3.8662538629822487	GGACGATTCTAGTGTTT
chr22	49134240	49134241	chr22:49134241:T:C	rs135252	T	C	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr22	49134901	49134902	chr22:49134902:G:A	rs739195	G	A	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr22	49279118	49279119	chr22:49279119:A:G	rs2091049	A	G	G	Sox3.mouse_HMG_1	14	1	-	-1.1519273308254336	-7.261818246074141	GAGCAGTATCATGGTTG
chr22	49344530	49344531	chr22:49344531:G:A	rs67002701	G	A	g	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr22	49357189	49357190	chr22:49357190:G:A	rs9306530	G	A	g	Sox3.mouse_HMG_1	13	1	+	-0.22854797399424087	-6.3366537640201575	GAGCAATGGAATCGTGA
chr22	49406554	49406555	chr22:49406555:A:G	rs136770	A	G	A	Sox3.mouse_HMG_1	9	1	-	6.044404274192551	6.080110399077119	AAAAAATTATAATGTTT
chr22	49414917	49414918	chr22:49414918:A:G	rs6009671	A	G	A	Sox3.mouse_HMG_1	1	1	+	-0.2667706014601342	-4.594203944862826	AAACAAGGCCAAGGTTT
chr22	49429070	49429071	chr22:49429071:T:C	rs136780	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr22	49628565	49628566	chr22:49628566:C:G	rs6009789	C	G	C	Sox3.mouse_HMG_1	3	1	+	-0.29113988386851863	-7.198174903526172	CGACAATGGCCTAGTTA
chr22	49759754	49759755	chr22:49759755:A:T	rs6009869	A	T	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr22	49765423	49765424	chr22:49765424:A:G	rs138809	A	G	a	Sox3.mouse_HMG_1	5	1	+	2.6064743789995717	-4.119659098302884	TATCCATGTCAGTGTTT
chr22	49884186	49884187	chr22:49884187:T:C	rs910796	T	C	C	Sox3.mouse_HMG_1	12	1	+	0.05905458938412045	-6.147410995833731	GGAAAATGGCAGTGTGT
chr22	49897954	49897955	chr22:49897955:G:A	rs73443931	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr22	50069901	50069902	chr22:50069902:T:C	rs5771145	T	C	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr22	50131931	50131932	chr22:50131932:A:G	rs138250	A	G	a	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr22	50174510	50174511	chr22:50174511:G:A	rs866588572	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr22	50543006	50543007	chr22:50543007:G:A	rs131784	G	A	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr22	50568558	50568559	chr22:50568559:T:C	rs5770905	T	C	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr22	50623622	50623623	chr22:50623623:G:T	rs6009939	G	T	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr22	50700324	50700325	chr22:50700325:A:G	rs1001469	A	G	G	Sox3.mouse_HMG_1	14	1	-	1.8744441656804676	-4.23544674956824	AGACAATGCCTCTGTTT
chr3	46960	46961	chr3:46961:T:C	rs9845270	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr3	700627	700628	chr3:700628:G:C	rs2729178	G	C	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr3	1020702	1020703	chr3:1020703:T:C	rs4589918	T	C	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr3	1087111	1087112	chr3:1087112:A:G	rs2729140	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr3	1249677	1249678	chr3:1249678:T:A	rs17036386	T	A	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr3	1270057	1270058	chr3:1270058:A:G	rs7621594	A	G	G	Sox3.mouse_HMG_1	8	1	-	6.636445252240147	6.323706027329603	GCACAATGTTATTGTCA
chr3	1527909	1527910	chr3:1527910:C:G	rs73001631	C	G	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr3	1849227	1849228	chr3:1849228:G:A	rs2731503	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr3	2083202	2083203	chr3:2083203:C:A	chr3:2083203:C:A	C	A	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr3	2177636	2177637	chr3:2177637:A:G	rs115249398	A	G	A	Sox3.mouse_HMG_1	4	1	+	2.1500178417011857	-4.662307250276051	AACCAATGGGATTGTGT
chr3	2207227	2207228	chr3:2207228:T:C	rs1153540	T	C	T	Sox3.mouse_HMG_1	11	1	+	3.8531936637008295	-2.2042624452595234	ACACAATAATATTGAAA
chr3	2654128	2654129	chr3:2654129:G:T	rs11129229	G	T	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr3	2851093	2851094	chr3:2851094:A:T	rs9825107	A	T	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr3	2856352	2856353	chr3:2856353:A:G	rs11715403	A	G	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr3	2897314	2897315	chr3:2897315:A:G	rs73005473	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr3	3100108	3100109	chr3:3100109:C:T	rs6442777	C	T	C	Sox3.mouse_HMG_1	7	1	-	8.446243383901038	7.950173064123726	CAACAAGGCCAGTGTTT
chr3	3655188	3655189	chr3:3655189:T:C	rs9873276	T	C	T	Sox3.mouse_HMG_1	11	1	+	2.619099515547103	-3.438356593413248	AAACAATACCATTTACT
chr3	3951874	3951875	chr3:3951875:T:G	rs2596861	T	G	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr3	4033491	4033492	chr3:4033492:G:A	rs75578780	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr3	4097976	4097977	chr3:4097977:C:G	rs73129164	C	G	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr3	4712440	4712441	chr3:4712441:T:C	rs9880562	T	C	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr3	4865838	4865839	chr3:4865839:A:G	rs2099836	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr3	4976969	4976970	chr3:4976970:A:T	rs540105376	A	T	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr3	4989275	4989276	chr3:4989276:C:T	rs2137947	C	T	C	Sox3.mouse_HMG_1	4	1	-	1.9006438597491135	8.712968951726348	AAACGATTACAGTGGTA
chr3	5227471	5227472	chr3:5227472:G:A	rs12495994	G	A	G	Sox3.mouse_HMG_1	13	1	+	1.2537174805198101	-4.854388309506106	CAATGATGACATTGTGT
chr3	5248764	5248765	chr3:5248765:T:C	rs466718	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.13397670861351	-4.592156768688944	AATCAATTCTAGTTTTG
chr3	5275587	5275588	chr3:5275588:G:A	rs75517526	G	A	G	Sox3.mouse_HMG_1	4	1	-	3.2599438596087356	3.670949148092516	AAACCATTACAGAGTTG
chr3	5357688	5357689	chr3:5357689:A:G	rs62257000	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr3	5769127	5769128	chr3:5769128:C:T	rs562898089	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr3	5889673	5889674	chr3:5889674:A:C	rs73111807	A	C	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr3	5961026	5961027	chr3:5961027:A:G	rs4686001	A	G	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr3	6055885	6055886	chr3:6055886:C:T	rs28534488	C	T	T	Sox3.mouse_HMG_1	8	1	-	9.694844135122224	10.721257610132861	GAATAATGGCAGTGTTT
chr3	6079813	6079814	chr3:6079814:A:G	rs13088182	A	G	A	Sox3.mouse_HMG_1	0	1	-	6.438941458719585	6.8725042716836295	TAACAAAAATATTGTCT
chr3	6100081	6100082	chr3:6100082:T:C	rs6794064	T	C	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr3	6173604	6173605	chr3:6173605:C:T	rs7636014	C	T	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr3	6642796	6642797	chr3:6642797:A:T	rs191605	A	T	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr3	6680737	6680738	chr3:6680738:C:G	rs17045703	C	G	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr3	6798853	6798854	chr3:6798854:C:A	rs163679	C	A	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr3	7475602	7475603	chr3:7475603:T:C	rs1391902	T	C	T	Sox3.mouse_HMG_1	5	1	-	5.003794961387481	-1.7223385159149773	TAACAATAACAGTGACG
chr3	7779592	7779593	chr3:7779593:T:C	rs55804114	T	C	T	Sox3.mouse_HMG_1	2	1	-	1.7173626999579075	-2.690572279022553	GCACAATAGCAGTGGTA
chr3	7862651	7862652	chr3:7862652:C:G	rs67790195	C	G	g	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr3	7875716	7875717	chr3:7875717:C:A	rs447954	C	A	A	Sox3.mouse_HMG_1	13	1	-	5.029794660497078	-1.3393249548984567	AAACATTGAATTTGTTT
chr3	8139085	8139086	chr3:8139086:C:T	rs394471	C	T	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr3	8145919	8145920	chr3:8145920:G:A	rs1967402	G	A	A	Sox3.mouse_HMG_1	15	1	-	3.305190131778428	7.607691929573911	TAACATTTACAGTGTCT
chr3	8307758	8307759	chr3:8307759:C:A	rs564240612	C	A	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr3	8504415	8504416	chr3:8504416:G:A	rs9312023	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr3	8565846	8565847	chr3:8565847:G:C	rs1965215	G	C	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr3	8573764	8573765	chr3:8573765:A:G	rs73024306	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr3	8573802	8573803	chr3:8573803:A:G	rs15734	A	G	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr3	8780055	8780056	chr3:8780056:A:G	rs237925	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr3	8841731	8841732	chr3:8841732:A:G	rs7612922	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr3	8888121	8888122	chr3:8888122:G:A	rs9845029	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr3	8899991	8899992	chr3:8899992:T:C	rs17049723	T	C	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr3	8900752	8900753	chr3:8900753:C:G	rs250411	C	G	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr3	8937445	8937446	chr3:8937446:G:A	rs181922716	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr3	8963065	8963066	chr3:8963066:C:T	rs45585931	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr3	9332634	9332635	chr3:9332635:A:C	rs2648554	A	C	C	Sox3.mouse_HMG_1	12	1	-	4.577972598390871	-1.9901554722767516	AAACAATTCTTTTCTTT
chr3	9843173	9843174	chr3:9843174:G:A	rs939328512	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr3	9898316	9898317	chr3:9898317:C:G	rs183734953	C	G	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr3	9957523	9957524	chr3:9957524:G:C	rs34391585	G	C	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr3	10195153	10195154	chr3:10195154:G:A	rs165498	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr3	10318324	10318325	chr3:10318325:G:A	rs83604	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr3	10553407	10553408	chr3:10553408:T:C	rs1009398193	T	C	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr3	10925025	10925026	chr3:10925026:T:C	rs2581215	T	C	T	Sox3.mouse_HMG_1	11	1	+	3.2111796416918073	-2.8462764672685457	AAAAAATTGAATTGATG
chr3	11080726	11080727	chr3:11080727:G:A	rs115089370	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr3	11461622	11461623	chr3:11461623:T:C	rs2244617	T	C	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr3	11567839	11567840	chr3:11567840:A:G	rs2447602	A	G	A	Sox3.mouse_HMG_1	6	1	-	12.735116406874475	6.089025637245555	TAACAATAAAATTGTAT
chr3	11614365	11614366	chr3:11614366:C:T	rs61521214	C	T	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr3	11614372	11614373	chr3:11614373:C:T	rs57564733	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr3	11690169	11690170	chr3:11690170:T:C	rs9867525	T	C	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr3	12114538	12114539	chr3:12114539:A:G	rs74795148	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr3	12239370	12239371	chr3:12239371:G:A	rs113766050	G	A	G	Sox3.mouse_HMG_1	9	1	-	2.2325529169033453	2.1968467920187775	TAAGAATACCAGTGATT
chr3	12293712	12293713	chr3:12293713:A:G	rs2920504	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr3	12489921	12489922	chr3:12489922:G:A	rs12495784	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr3	12700820	12700821	chr3:12700821:A:T	rs13072789	A	T	T	Sox3.mouse_HMG_1	1	1	+	1.944277888531754	-2.9460610377424494	AAGCATGGATATTGTTT
chr3	12973493	12973494	chr3:12973494:T:C	rs12492009	T	C	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr3	13277159	13277160	chr3:13277160:C:T	rs630814	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr3	13277203	13277204	chr3:13277204:A:C	rs191561006	A	C	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr3	13646656	13646657	chr3:13646657:C:T	rs4684974	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr3	13659366	13659367	chr3:13659367:T:C	rs13078230	T	C	T	Sox3.mouse_HMG_1	6	1	+	11.274253037125868	4.628162267496948	AAATAATGTCAGTGTTT
chr3	13797009	13797010	chr3:13797010:T:C	rs6442412	T	C	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr3	13857120	13857121	chr3:13857121:C:T	rs9819887	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr3	13881496	13881497	chr3:13881497:A:G	rs1991850	A	G	A	Sox3.mouse_HMG_1	4	1	+	2.7454646600032375	-4.066860431973997	GAACAAGAACAGAGTTG
chr3	14175776	14175777	chr3:14175777:T:G	rs147123477	T	G	T	Sox3.mouse_HMG_1	12	1	+	3.1874548807434104	-3.380673189924212	ACACTATTACAGTGTTA
chr3	14175788	14175789	chr3:14175789:C:A	rs1982546	C	A	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr3	14201031	14201032	chr3:14201032:T:A	rs73815319	T	A	T	Sox3.mouse_HMG_1	15	1	+	6.843836589930801	3.3469929681383297	GAGAAATGTTATTGTTT
chr3	14345653	14345654	chr3:14345654:T:C	rs749855	T	C	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr3	14439269	14439270	chr3:14439270:T:C	rs6790433	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr3	14471222	14471223	chr3:14471223:A:C	rs9826660	A	C	C	Sox3.mouse_HMG_1	13	1	+	9.082375453676185	9.082375453676185	TAACAATTAAATTATTT
chr3	14514666	14514667	chr3:14514667:G:A	rs4684228	G	A	G	Sox3.mouse_HMG_1	13	1	+	4.596637687592031	-1.5114681024338854	GAACAATGGGATCGTTG
chr3	14787773	14787774	chr3:14787774:T:C	rs13080265	T	C	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr3	14958673	14958674	chr3:14958674:T:G	rs116130753	T	G	t	Sox3.mouse_HMG_1	1	1	-	6.691156874537485	1.0533019782763762	AAAAAATCCTATTGTTT
chr3	15647550	15647551	chr3:15647551:C:T	rs73145546	C	T	C	Sox3.mouse_HMG_1	3	1	+	1.8812890348602649	-4.1014870832740575	GAACAAAGTAATTTTTA
chr3	15812174	15812175	chr3:15812175:G:A	rs4685263	G	A	a	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr3	15899671	15899672	chr3:15899672:C:T	rs9870563	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr3	16148824	16148825	chr3:16148825:T:G	rs73152332	T	G	T	Sox3.mouse_HMG_1	10	1	-	3.361502882157927	-3.2031525724233356	GAACATTTACAGTGTAA
chr3	16291808	16291809	chr3:16291809:T:C	rs7637475	T	C	C	Sox3.mouse_HMG_1	6	1	+	3.8886555807918706	-2.757435188837052	GCACTATTAAATTGTTT
chr3	16463049	16463050	chr3:16463050:C:T	rs17042294	C	T	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr3	16633619	16633620	chr3:16633620:A:C	rs7647846	A	C	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr3	16670872	16670873	chr3:16670873:T:A	rs75913453	T	A	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr3	16741925	16741926	chr3:16741926:C:T	rs9827713	C	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr3	17233587	17233588	chr3:17233588:T:C	rs113993660	T	C	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr3	17850416	17850417	chr3:17850417:T:G	rs76890050	T	G	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr3	18238033	18238034	chr3:18238034:C:A	rs35161320	C	A	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr3	18239953	18239954	chr3:18239954:T:C	rs67878364	T	C	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr3	18590532	18590533	chr3:18590533:G:A	rs336613	G	A	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr3	18778328	18778329	chr3:18778329:C:G	rs7428366	C	G	G	Sox3.mouse_HMG_1	8	1	-	2.7373818401548267	2.6312348517863873	AACCAATTGAAGTGTAA
chr3	18778340	18778341	chr3:18778341:A:C	rs7429165	A	C	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr3	19739454	19739455	chr3:19739455:A:C	rs185878587	A	C	A	Sox3.mouse_HMG_1	5	1	+	4.35805390842531	-2.455090945866778	GCATAATGAAATTGTTA
chr3	19757797	19757798	chr3:19757798:T:G	rs4858093	T	G	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr3	20091891	20091892	chr3:20091892:T:G	rs6783444	T	G	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr3	20339854	20339855	chr3:20339855:T:C	rs1401924	T	C	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr3	20838538	20838539	chr3:20838539:A:G	rs1499003	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr3	20844633	20844634	chr3:20844634:G:A	rs7629544	G	A	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr3	20854249	20854250	chr3:20854250:A:G	rs6786441	A	G	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr3	21056763	21056764	chr3:21056764:G:A	rs34862381	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr3	21270910	21270911	chr3:21270911:T:G	rs1821775	T	G	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr3	21445306	21445307	chr3:21445307:A:G	rs3913942	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr3	21509996	21509997	chr3:21509997:C:T	rs9862072	C	T	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr3	21691088	21691089	chr3:21691089:A:G	rs79069758	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr3	21744870	21744871	chr3:21744871:T:A	rs12638816	T	A	-	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr3	21744903	21744904	chr3:21744904:C:T	rs7340576	C	T	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr3	21755223	21755224	chr3:21755224:A:T	rs62236199	A	T	A	Sox3.mouse_HMG_1	15	1	+	8.327181427894013	11.824025049686485	TAGCAATAAAATTGTAT
chr3	21836618	21836619	chr3:21836619:C:T	rs2630791	C	T	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr3	21884715	21884716	chr3:21884716:T:C	rs259562	T	C	C	Sox3.mouse_HMG_1	8	1	-	3.9086832392761846	2.8822697642655486	ACACAATTATATAGTAT
chr3	21914291	21914292	chr3:21914292:T:G	rs10510520	T	G	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr3	21954536	21954537	chr3:21954537:G:T	rs1486397	G	T	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr3	22015649	22015650	chr3:22015650:G:T	rs190491	G	T	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr3	22097920	22097921	chr3:22097921:A:G	rs12491081	A	G	g	Sox3.mouse_HMG_1	10	1	+	2.4226638816001147	-4.485581277371224	AGACAGTGGCATTGTCA
chr3	22229438	22229439	chr3:22229439:C:T	rs1025162940	C	T	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr3	22315992	22315993	chr3:22315993:G:A	rs73821883	G	A	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr3	22352989	22352990	chr3:22352990:G:C	rs7644804	G	C	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr3	22352994	22352995	chr3:22352995:G:A	rs9824408	G	A	G	Sox3.mouse_HMG_1	12	1	-	1.1238064981910865	7.330272083408937	AAACAAAGACATCGTGA
chr3	22453968	22453969	chr3:22453969:G:A	rs951605	G	A	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr3	23485979	23485980	chr3:23485980:G:A	rs7641437	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr3	23543412	23543413	chr3:23543413:G:A	rs9815921	G	A	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr3	23743104	23743105	chr3:23743105:T:G	rs13084557	T	G	T	Sox3.mouse_HMG_1	11	1	+	5.992765610870872	3.8647869440099925	AAGCAATTAATTTGTTT
chr3	23829910	23829911	chr3:23829911:G:A	rs2045300	G	A	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr3	24213002	24213003	chr3:24213003:C:T	rs941104107	C	T	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr3	24263044	24263045	chr3:24263045:G:A	rs73823270	G	A	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr3	24263050	24263051	chr3:24263051:T:C	rs73823271	T	C	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr3	24918111	24918112	chr3:24918112:A:G	rs9843036	A	G	G	Sox3.mouse_HMG_1	8	1	-	5.902277298664789	5.589538073754245	GAACAATGTTATTCTGA
chr3	24918123	24918124	chr3:24918124:G:C	rs73049480	G	C	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr3	24918159	24918160	chr3:24918160:A:G	rs11712813	A	G	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr3	24940130	24940131	chr3:24940131:A:T	rs7648839	A	T	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr3	24967931	24967932	chr3:24967932:G:A	rs4458332	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr3	24995011	24995012	chr3:24995012:C:T	rs115342535	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr3	25114132	25114133	chr3:25114133:G:A	rs1909527	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr3	25124854	25124855	chr3:25124855:A:G	rs76988318	A	G	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr3	25124860	25124861	chr3:25124861:C:A	rs116698427	C	A	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr3	25387720	25387721	chr3:25387721:T:A	rs79116543	T	A	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr3	25461004	25461005	chr3:25461005:C:T	rs74820342	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr3	25489882	25489883	chr3:25489883:G:T	rs73046112	G	T	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr3	25501783	25501784	chr3:25501784:C:T	rs1153582	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr3	25507470	25507471	chr3:25507471:C:T	rs1997353	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr3	26059102	26059103	chr3:26059103:G:T	rs150419752	G	T	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr3	26059109	26059110	chr3:26059110:A:G	rs17017366	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr3	26062084	26062085	chr3:26062085:A:G	rs13063917	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr3	26069598	26069599	chr3:26069599:T:C	rs6551031	T	C	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr3	26171144	26171145	chr3:26171145:A:G	rs7617122	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr3	26761603	26761604	chr3:26761604:T:C	rs9858519	T	C	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr3	26796841	26796842	chr3:26796842:C:T	rs964018	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr3	26922868	26922869	chr3:26922869:T:C	rs13089402	T	C	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr3	26978862	26978863	chr3:26978863:T:C	rs17019079	T	C	T	Sox3.mouse_HMG_1	6	1	+	2.597205155360699	-4.048885614268218	AAACAATGATTATGTAA
chr3	27667093	27667094	chr3:27667094:A:G	rs76604855	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr3	27677646	27677647	chr3:27677647:T:C	rs115782731	T	C	T	Sox3.mouse_HMG_1	14	1	+	5.57888049328965	-0.5310104219590571	AAACAATAAAATGATTT
chr3	27677660	27677661	chr3:27677661:A:G	rs17685252	A	G	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr3	27845335	27845336	chr3:27845336:A:C	rs9860778	A	C	A	Sox3.mouse_HMG_1	14	1	-	3.814750727205843	-2.611898524576154	AAAAAATGCTAGTTTTT
chr3	27913041	27913042	chr3:27913042:A:G	rs114917147	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr3	28022915	28022916	chr3:28022916:C:T	rs365482	C	T	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr3	28211354	28211355	chr3:28211355:T:A	rs1042391960	T	A	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr3	28249451	28249452	chr3:28249452:A:G	rs12498078	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr3	28351106	28351107	chr3:28351107:T:C	rs6763313	T	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr3	28612722	28612723	chr3:28612723:C:T	rs9860844	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr3	28626886	28626887	chr3:28626887:G:A	rs12497674	G	A	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr3	28720895	28720896	chr3:28720896:A:G	rs1350868	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.1910009819153102	-3.4550897877136078	AAACAATACAGCTGTTG
chr3	28940544	28940545	chr3:28940545:T:A	chr3:28940545:T:A	T	A	T	Sox3.mouse_HMG_1	7	1	-	2.5747949115297626	1.5333161265649182	GAAAAAAAACAGTGTTT
chr3	29202742	29202743	chr3:29202743:G:T	rs2048896	G	T	T	Sox3.mouse_HMG_1	0	1	-	2.675718456500969	4.265309968853167	CGACAATATCAGTGTGC
chr3	29240124	29240125	chr3:29240125:A:G	rs80326760	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr3	29390306	29390307	chr3:29390307:A:G	rs4491856	A	G	g	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr3	29415760	29415761	chr3:29415761:G:A	rs144508398	G	A	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr3	29564842	29564843	chr3:29564843:A:G	rs3773084	A	G	A	Sox3.mouse_HMG_1	10	1	+	9.156643180174722	2.2483980212033843	AGACAATGCCATAGTTT
chr3	29604244	29604245	chr3:29604245:T:C	rs7634557	T	C	T	Sox3.mouse_HMG_1	14	1	+	5.038101868133696	-1.0717890471150107	TAGCAATATAATTGTGA
chr3	29644379	29644380	chr3:29644380:A:G	rs17613797	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr3	29648893	29648894	chr3:29648894:T:C	rs9877765	T	C	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr3	29693871	29693872	chr3:29693872:C:T	rs9833942	C	T	T	Sox3.mouse_HMG_1	8	1	-	3.5020996499338803	4.528513124944517	AAACAAGAGTAGTATTT
chr3	30018359	30018360	chr3:30018360:C:T	rs4680867	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr3	30044827	30044828	chr3:30044828:C:T	rs6549972	C	T	c	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr3	30395582	30395583	chr3:30395583:T:A	rs2101835	T	A	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr3	30451858	30451859	chr3:30451859:C:T	rs11129405	C	T	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr3	30511318	30511319	chr3:30511319:C:T	rs7625124	C	T	C	Sox3.mouse_HMG_1	8	1	-	1.860772978099913	2.887186453110549	AAAGAATGGCATTCTCT
chr3	30656899	30656900	chr3:30656900:T:C	rs2082225	T	C	C	Sox3.mouse_HMG_1	7	1	+	2.233358739559335	-1.8497842906232822	GAACAACTATAGTGATG
chr3	30721168	30721169	chr3:30721169:G:A	rs2219610	G	A	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr3	30749437	30749438	chr3:30749438:A:G	rs9310941	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr3	30813866	30813867	chr3:30813867:A:G	rs1158453	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr3	31075883	31075884	chr3:31075884:A:G	rs1485925	A	G	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr3	31286218	31286219	chr3:31286219:A:G	rs142787232	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr3	31481980	31481981	chr3:31481981:A:G	rs6795328	A	G	A	Sox3.mouse_HMG_1	15	1	-	5.731565370045666	1.4290635722501825	CAATAATAATATTTTTT
chr3	31481997	31481998	chr3:31481998:T:A	rs6783815	T	A	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr3	31547754	31547755	chr3:31547755:C:T	rs138686438	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr3	31637019	31637020	chr3:31637020:A:G	rs9828641	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.641563859701554	-1.415892249258799	GAACAAAATCATTGTGA
chr3	31684632	31684633	chr3:31684633:C:G	rs17027964	C	G	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr3	31908058	31908059	chr3:31908059:A:T	rs4349536	A	T	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr3	31996359	31996360	chr3:31996360:C:G	rs976188	C	G	-	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr3	32402092	32402093	chr3:32402093:A:G	rs7616021	A	G	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr3	32403753	32403754	chr3:32403754:A:G	rs3844589	A	G	G	Sox3.mouse_HMG_1	2	1	-	1.3193467681126587	0.7960986243481111	CATCATTTTCAGTGTTT
chr3	32439178	32439179	chr3:32439179:A:G	rs117521161	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr3	32439200	32439201	chr3:32439201:C:T	rs12152273	C	T	C	Sox3.mouse_HMG_1	7	1	-	3.063803129449626	2.567732809672316	GAGCAACGCAAGTGTTT
chr3	32713051	32713052	chr3:32713052:G:T	rs7642441	G	T	G	Sox3.mouse_HMG_1	7	1	+	6.25110836523305	4.713559260490896	GTAAAATGACATTGTTG
chr3	32837181	32837182	chr3:32837182:G:A	rs115239499	G	A	g	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr3	32958688	32958689	chr3:32958689:A:C	rs6807638	A	C	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr3	32993224	32993225	chr3:32993225:T:G	rs6792585	T	G	T	Sox3.mouse_HMG_1	11	1	+	5.773250984268742	3.645272317407862	AAACAATTTCATTCTGA
chr3	33039763	33039764	chr3:33039764:T:C	chr3:33039764:T:C	T	C	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr3	33539721	33539722	chr3:33539722:T:A	rs75203728	T	A	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr3	33940711	33940712	chr3:33940712:A:C	rs9879421	A	C	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr3	34647154	34647155	chr3:34647155:A:T	rs888138	A	T	T	Sox3.mouse_HMG_1	12	1	-	4.268261711734645	-1.3199303618984668	AAAAAATAAAAATGTTA
chr3	34838414	34838415	chr3:34838415:C:T	rs565540	C	T	C	Sox3.mouse_HMG_1	6	1	+	1.7193807134218488	8.365471483050767	AAACAACGGAAATGTAT
chr3	35120189	35120190	chr3:35120190:A:C	rs115222170	A	C	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr3	35830933	35830934	chr3:35830934:G:T	rs55950610	G	T	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr3	35955380	35955381	chr3:35955381:A:G	rs1488092	A	G	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr3	36991050	36991051	chr3:36991051:A:G	rs115121044	A	G	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr3	36991970	36991971	chr3:36991971:T:G	rs4647200	T	G	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr3	37695368	37695369	chr3:37695369:C:T	rs188531016	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr3	37695371	37695372	chr3:37695372:C:T	rs11717612	C	T	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr3	37743238	37743239	chr3:37743239:G:T	rs7633317	G	T	T	Sox3.mouse_HMG_1	9	1	-	3.503533717337241	2.0498893305081416	CAACAATGGCAGATTTT
chr3	37751488	37751489	chr3:37751489:G:A	rs2844377	G	A	G	Sox3.mouse_HMG_1	11	1	+	0.6460871790425866	-3.088390248003162	GAACATCTACAGTGTTG
chr3	37771235	37771236	chr3:37771236:G:A	rs72860979	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr3	37923701	37923702	chr3:37923702:A:G	rs9815006	A	G	G	Sox3.mouse_HMG_1	1	1	+	2.941656246590716	-1.3857770968119758	CAGCAATGACATTTTAA
chr3	38228337	38228338	chr3:38228338:A:G	rs111369288	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr3	38308583	38308584	chr3:38308584:C:T	rs11129785	C	T	c	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr3	38308602	38308603	chr3:38308603:A:G	rs818822	A	G	G	Sox3.mouse_HMG_1	1	1	+	2.1484405838914737	-2.1789927595112193	AAACAAGGACAATGATT
chr3	38595668	38595669	chr3:38595669:C:T	rs13062931	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr3	39138367	39138368	chr3:39138368:T:C	rs77110687	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr3	40058079	40058080	chr3:40058080:T:C	rs9863428	T	C	C	Sox3.mouse_HMG_1	2	1	-	5.432779341810388	1.024844362829933	AAACAATGATATGGTGC
chr3	40218246	40218247	chr3:40218247:G:A	rs11129869	G	A	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr3	40310642	40310643	chr3:40310643:C:T	rs3214006	C	T	C	Sox3.mouse_HMG_1	9	1	+	5.4155111933476	5.379805068463031	GAACGATAACATTATTT
chr3	40485639	40485640	chr3:40485640:C:T	rs114248724	C	T	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr3	41502627	41502628	chr3:41502628:T:C	rs1795322	T	C	T	Sox3.mouse_HMG_1	11	1	+	10.482515052913795	4.4250589439534425	GAACAATACTATTGATA
chr3	41682183	41682184	chr3:41682184:A:G	rs78367972	A	G	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr3	42032657	42032658	chr3:42032658:G:A	rs13315860	G	A	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr3	42077880	42077881	chr3:42077881:T:A	rs6801363	T	A	A	Sox3.mouse_HMG_1	8	1	-	5.776375985591213	4.956554747122678	AGACAATAACATTCTAT
chr3	42098199	42098200	chr3:42098200:G:C	rs12054017	G	C	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr3	42176602	42176603	chr3:42176603:G:C	rs1010987	G	C	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr3	42177632	42177633	chr3:42177633:A:G	rs56037700	A	G	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr3	42229988	42229989	chr3:42229989:C:T	rs7623110	C	T	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr3	42275390	42275391	chr3:42275391:G:C	rs79199376	G	C	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr3	42736370	42736371	chr3:42736371:A:G	rs11922251	A	G	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr3	42992905	42992906	chr3:42992906:G:A	rs7637698	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr3	43071496	43071497	chr3:43071497:A:C	rs940811053	A	C	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr3	43364905	43364906	chr3:43364906:G:A	rs150764868	G	A	g	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr3	43890537	43890538	chr3:43890538:G:T	rs57154335	G	T	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr3	44323915	44323916	chr3:44323916:C:A	rs5007342	C	A	A	Sox3.mouse_HMG_1	7	1	-	1.6528264405834425	0.11527733584128769	AAACAATGCTTTTCTAG
chr3	45079019	45079020	chr3:45079020:T:G	rs11717325	T	G	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr3	45097671	45097672	chr3:45097672:C:T	rs79330620	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr3	45112215	45112216	chr3:45112216:G:A	rs35501071	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr3	45639430	45639431	chr3:45639431:A:C	rs115417394	A	C	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr3	45875525	45875526	chr3:45875526:C:T	rs74426244	C	T	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr3	45897446	45897447	chr3:45897447:G:A	rs2236938	G	A	G	Sox3.mouse_HMG_1	3	1	-	4.402521825484465	-1.5802542926498555	AGACAAGGACATTGTGT
chr3	46014680	46014681	chr3:46014681:C:T	rs35751180	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr3	46080854	46080855	chr3:46080855:T:A	rs12486449	T	A	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr3	46370348	46370349	chr3:46370349:G:T	rs2734648	G	T	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr3	46429627	46429628	chr3:46429628:A:C	rs112479910	A	C	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr3	46472781	46472782	chr3:46472782:T:C	rs7641783	T	C	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr3	46472789	46472790	chr3:46472790:G:T	rs192970046	G	T	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr3	47315235	47315236	chr3:47315236:C:G	rs145745253	C	G	c	Sox3.mouse_HMG_1	11	1	-	3.8639994238573467	-0.06547801824212618	GAACAATTCCAGGGTTC
chr3	47413928	47413929	chr3:47413929:G:A	rs112830289	G	A	G	Sox3.mouse_HMG_1	13	1	+	5.550686349340431	-0.5574194406854849	AGACAATGGCAGCGTTG
chr3	47522034	47522035	chr3:47522035:T:A	rs66482469	T	A	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr3	47990201	47990202	chr3:47990202:A:T	rs55772523	A	T	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr3	48302217	48302218	chr3:48302218:T:C	rs7621785	T	C	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr3	48307073	48307074	chr3:48307074:A:C	rs79089926	A	C	C	Sox3.mouse_HMG_1	14	1	-	2.5146707227011387	-3.9119785290808595	GAACTATGGTTGTGTTT
chr3	49620007	49620008	chr3:49620008:A:G	rs4855833	A	G	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr3	50057675	50057676	chr3:50057676:T:C	rs7636203	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr3	50676031	50676032	chr3:50676032:A:C	rs193132573	A	C	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr3	50725602	50725603	chr3:50725603:A:C	rs7652715	A	C	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr3	50745933	50745934	chr3:50745934:T:C	rs60552386	T	C	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr3	50989324	50989325	chr3:50989325:G:A	chr3:50989325:G:A	G	A	G	Sox3.mouse_HMG_1	3	1	-	1.5281520324907238	-4.454624085643602	GGGCAATCTCAGTGTTT
chr3	51582317	51582318	chr3:51582318:T:C	rs6806509	T	C	T	Sox3.mouse_HMG_1	4	1	-	4.084208906854003	-2.728116185123234	GAACAAAGGCTTTGTTT
chr3	52144539	52144540	chr3:52144540:G:A	rs148576317	G	A	G	Sox3.mouse_HMG_1	9	1	-	3.4942834851148286	3.4585773602302607	TGACAATGACACTGTCT
chr3	52763617	52763618	chr3:52763618:G:C	rs1029871	G	C	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr3	53799370	53799371	chr3:53799371:A:G	rs3796348	A	G	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr3	53850190	53850191	chr3:53850191:C:G	rs4687752	C	G	C	Sox3.mouse_HMG_1	8	1	+	1.7372659516389057	1.843412940007346	AAACCAATCTAGTGTTT
chr3	54902643	54902644	chr3:54902644:G:A	rs17319204	G	A	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr3	54902661	54902662	chr3:54902662:T:G	rs17054529	T	G	T	Sox3.mouse_HMG_1	5	1	-	3.2095756379093996	-3.603569216382685	CAACAATGCAATGGATG
chr3	55007695	55007696	chr3:55007696:G:T	rs2280187	G	T	G	Sox3.mouse_HMG_1	16	1	-	3.9391492327253705	6.141262812868133	GGACAATGTTATTCTTC
chr3	55008333	55008334	chr3:55008334:A:G	rs3912834	A	G	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr3	55085508	55085509	chr3:55085509:A:G	rs165387	A	G	A	Sox3.mouse_HMG_1	1	1	+	3.0152981424713055	-1.3121352009313876	AAACAGTAGCTGTGTTT
chr3	55166823	55166824	chr3:55166824:G:A	rs115289696	G	A	G	Sox3.mouse_HMG_1	8	1	+	10.272723592491042	11.299137067501677	CAACAATGGAAATGTTT
chr3	55166839	55166840	chr3:55166840:G:A	rs35729033	G	A	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr3	55344473	55344474	chr3:55344474:C:T	rs4955983	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr3	55344474	55344475	chr3:55344475:A:G	rs4955984	A	G	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr3	55412295	55412296	chr3:55412296:A:T	rs1964454	A	T	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr3	55666483	55666484	chr3:55666484:G:A	rs1900093	G	A	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr3	56106422	56106423	chr3:56106423:G:A	rs9855836	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr3	56169634	56169635	chr3:56169635:C:T	rs62255424	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr3	56373676	56373677	chr3:56373677:G:A	rs11711928	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr3	56684201	56684202	chr3:56684202:G:A	rs55810735	G	A	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr3	56783726	56783727	chr3:56783727:G:A	rs1176353324	G	A	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr3	56825690	56825691	chr3:56825691:C:T	rs58823518	C	T	C	Sox3.mouse_HMG_1	16	1	-	9.549248576116591	9.115417131395484	AAACAATGAAAGTCTTG
chr3	56825720	56825721	chr3:56825721:C:T	rs115009289	C	T	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr3	56856908	56856909	chr3:56856909:T:G	rs114823668	T	G	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr3	57385566	57385567	chr3:57385567:C:T	rs942623074	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr3	57800929	57800930	chr3:57800930:A:G	rs266842	A	G	A	Sox3.mouse_HMG_1	11	1	-	0.9701653428756567	-5.087290766084696	GAGCCATGGCATTGTCA
chr3	58048106	58048107	chr3:58048107:A:T	rs11707429	A	T	a	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr3	58048107	58048108	chr3:58048108:A:T	rs1018523160	A	T	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr3	58223801	58223802	chr3:58223802:A:G	rs143293477	A	G	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr3	58375789	58375790	chr3:58375790:G:A	rs6785572	G	A	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr3	58375802	58375803	chr3:58375803:A:C	rs6774357	A	C	C	Sox3.mouse_HMG_1	9	1	+	3.2665209108245437	4.720165297653643	AAATAATTAACTTGTTA
chr3	58392441	58392442	chr3:58392442:C:G	rs375098516	C	G	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr3	58423335	58423336	chr3:58423336:T:C	rs12631656	T	C	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr3	58789491	58789492	chr3:58789492:A:G	rs9311685	A	G	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr3	59331621	59331622	chr3:59331622:A:T	rs12489630	A	T	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr3	59364488	59364489	chr3:59364489:G:A	rs62250637	G	A	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr3	59381569	59381570	chr3:59381570:A:G	rs7372490	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr3	59917074	59917075	chr3:59917075:C:T	rs1825630	C	T	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr3	60153914	60153915	chr3:60153915:C:T	rs7642732	C	T	T	Sox3.mouse_HMG_1	8	1	-	3.970593101587342	4.997006576597978	GAACAAAAGCAGTGTCT
chr3	60334211	60334212	chr3:60334212:T:C	rs6779494	T	C	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr3	60698106	60698107	chr3:60698107:A:T	rs1735458	A	T	T	Sox3.mouse_HMG_1	14	1	-	6.914194590623021	1.6287172419279292	AAATAATTTAATTGTAT
chr3	60948076	60948077	chr3:60948077:G:A	rs1562524	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr3	61152476	61152477	chr3:61152477:T:A	rs6787511	T	A	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr3	61199977	61199978	chr3:61199978:G:C	rs11130821	G	C	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr3	61203446	61203447	chr3:61203447:T:C	rs1980309	T	C	T	Sox3.mouse_HMG_1	5	1	-	3.6638463571746818	-3.0622871201277726	AAACAATTTTTTTTTTG
chr3	61378413	61378414	chr3:61378414:A:G	rs72883298	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr3	61467494	61467495	chr3:61467495:G:A	rs12152314	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr3	61475842	61475843	chr3:61475843:T:C	rs6778557	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.532163774712187	-3.57772714053652	GAGCATTTGAATTGTTG
chr3	61872230	61872231	chr3:61872231:G:C	rs600368	G	C	g	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr3	62110972	62110973	chr3:62110973:G:T	chr3:62110973:G:T	G	T	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr3	62281123	62281124	chr3:62281124:C:T	rs9824098	C	T	T	Sox3.mouse_HMG_1	9	1	+	1.6286263063692439	1.592920181484676	GAAAACTTACAGTGTTT
chr3	62538974	62538975	chr3:62538975:A:G	rs17066545	A	G	A	Sox3.mouse_HMG_1	2	1	+	10.10552243652184	5.6975874575413785	GAACAATTTCATTTTTT
chr3	62835866	62835867	chr3:62835867:A:G	rs73097444	A	G	A	Sox3.mouse_HMG_1	2	1	+	2.543083184488717	-1.864851794491744	GAAAAATATTTTTGTTA
chr3	63370307	63370308	chr3:63370308:T:C	rs17068392	T	C	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr3	63451226	63451227	chr3:63451227:C:T	rs17068589	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr3	63753942	63753943	chr3:63753943:T:C	rs34520803	T	C	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr3	63887274	63887275	chr3:63887275:A:G	rs79701772	A	G	A	Sox3.mouse_HMG_1	12	1	-	5.139308188982545	-1.0671573962353063	AAACAAAGCCAGTGTAA
chr3	64000493	64000494	chr3:64000494:A:G	rs13272	A	G	G	Sox3.mouse_HMG_1	14	1	-	1.9091030701417775	-4.200787845106929	AAACAAGGGTAATGTAG
chr3	64047084	64047085	chr3:64047085:C:A	rs6769680	C	A	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr3	64223541	64223542	chr3:64223542:A:G	rs696236	A	G	A	Sox3.mouse_HMG_1	15	1	-	5.694476211202216	1.3919744134067322	GTAAAATAGCATTGTTT
chr3	64417818	64417819	chr3:64417819:T:C	rs6804863	T	C	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr3	64916750	64916751	chr3:64916751:T:C	rs73127613	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr3	64929302	64929303	chr3:64929303:G:A	rs6806742	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr3	64974537	64974538	chr3:64974538:T:C	rs997448	T	C	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr3	65071262	65071263	chr3:65071263:G:A	rs531928385	G	A	G	Sox3.mouse_HMG_1	16	1	+	2.8458134215910262	2.411981976869919	TCACAATAACAGTCTTG
chr3	65071275	65071276	chr3:65071276:T:G	rs9637475	T	G	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr3	65247096	65247097	chr3:65247097:G:A	rs4557104	G	A	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr3	65816311	65816312	chr3:65816312:T:G	rs1473530	T	G	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr3	65964227	65964228	chr3:65964228:C:A	rs117603829	C	A	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr3	66116349	66116350	chr3:66116350:T:C	rs28627801	T	C	C	Sox3.mouse_HMG_1	6	1	+	2.406460363621114	-4.239630406007806	AAACAATAGCTGTTTTG
chr3	66324468	66324469	chr3:66324469:A:G	rs73833463	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr3	66378377	66378378	chr3:66378378:C:T	rs148174157	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr3	66516783	66516784	chr3:66516784:T:C	rs7646790	T	C	T	Sox3.mouse_HMG_1	5	1	-	4.884574011954012	-1.8415594653484433	TAACAATGCTATTGGCA
chr3	67000662	67000663	chr3:67000663:T:G	rs9849949	T	G	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr3	67077958	67077959	chr3:67077959:T:C	rs9682687	T	C	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr3	67114018	67114019	chr3:67114019:G:C	rs79699936	G	C	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr3	67599608	67599609	chr3:67599609:C:T	rs6794091	C	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr3	67901882	67901883	chr3:67901883:C:T	rs1868185	C	T	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr3	69033639	69033640	chr3:69033640:G:C	chr3:69033640:G:C	G	C	G	Sox3.mouse_HMG_1	7	1	+	7.204267386375563	1.5835752514507897	AAGCAATGGTCTTGTTG
chr3	69248779	69248780	chr3:69248780:T:C	rs9842313	T	C	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr3	69256309	69256310	chr3:69256310:T:C	rs7619612	T	C	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr3	69274167	69274168	chr3:69274168:G:A	rs35547879	G	A	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr3	69274179	69274180	chr3:69274180:A:G	rs1564755	A	G	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr3	69433676	69433677	chr3:69433677:C:A	rs4855406	C	A	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr3	69469715	69469716	chr3:69469716:A:G	rs55976743	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr3	69504392	69504393	chr3:69504393:T:G	rs72937404	T	G	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr3	69533117	69533118	chr3:69533118:T:C	rs56147236	T	C	C	Sox3.mouse_HMG_1	12	1	+	2.5207394465559534	-3.6857261386618987	AAGGAATGACATTTTTT
chr3	69535881	69535882	chr3:69535882:T:C	rs7644318	T	C	C	Sox3.mouse_HMG_1	6	1	+	7.590376187447035	0.9442854178181173	AAGCAATGCCATTCTTG
chr3	69998044	69998045	chr3:69998045:C:T	rs143471157	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr3	70108379	70108380	chr3:70108380:C:A	rs60995599	C	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr3	70183474	70183475	chr3:70183475:T:C	rs6549292	T	C	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr3	70935907	70935908	chr3:70935908:C:A	rs11928769	C	A	C	Sox3.mouse_HMG_1	0	1	-	4.426040961477199	3.775703301622496	GAACAATGGCAGTGAGA
chr3	71130162	71130163	chr3:71130163:G:A	rs72949359	G	A	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr3	71168769	71168770	chr3:71168770:T:G	rs188739153	T	G	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr3	71387787	71387788	chr3:71387788:C:A	rs13093476	C	A	C	Sox3.mouse_HMG_1	7	1	-	5.372986646332128	3.8354375415899735	GAACAACGACTTTGTTT
chr3	71389687	71389688	chr3:71389688:T:C	rs56091574	T	C	T	Sox3.mouse_HMG_1	6	1	+	4.2947823253233155	-2.3513084443056056	TAACAATGACTTTCTTG
chr3	71414747	71414748	chr3:71414748:A:G	rs35956082	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr3	71514580	71514581	chr3:71514581:A:G	rs13078958	A	G	A	Sox3.mouse_HMG_1	2	1	+	2.9748843654608543	-1.4330506135196048	GAACAATTGAATAGATG
chr3	71549048	71549049	chr3:71549049:G:A	rs147358829	G	A	g	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr3	71611420	71611421	chr3:71611421:G:A	rs1717281	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr3	71726805	71726806	chr3:71726806:T:G	rs62246334	T	G	T	Sox3.mouse_HMG_1	13	1	+	1.7116037257196157	8.080723341115151	AAGCAATGACAGATTTT
chr3	72075898	72075899	chr3:72075899:T:C	rs67908047	T	C	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr3	72406203	72406204	chr3:72406204:C:T	rs12330322	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr3	72406213	72406214	chr3:72406214:A:G	rs12330549	A	G	G	Sox3.mouse_HMG_1	11	1	-	2.318511856721253	-3.7389442522391	GTACAATAGTATGGTAT
chr3	72607961	72607962	chr3:72607962:A:C	rs12714788	A	C	C	Sox3.mouse_HMG_1	1	1	+	0.8119273002777486	-4.825927595983363	AAGCATTGCTGTTGTTT
chr3	72942822	72942823	chr3:72942823:A:C	rs78389524	A	C	A	Sox3.mouse_HMG_1	6	1	+	2.8282488982873017	3.090613162754792	AAATAAATTCAGTGTTT
chr3	73509502	73509503	chr3:73509503:C:T	rs4676929	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr3	73557486	73557487	chr3:73557487:C:T	rs35594519	C	T	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr3	73664096	73664097	chr3:73664097:T:C	rs907338	T	C	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr3	73713915	73713916	chr3:73713916:G:A	rs11128364	G	A	A	Sox3.mouse_HMG_1	3	1	-	3.242898845829332	-2.73987727230499	AAACAACTGTAGAGTTT
chr3	73787935	73787936	chr3:73787936:A:G	rs484332	A	G	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr3	74006225	74006226	chr3:74006226:C:T	rs13090225	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr3	74023091	74023092	chr3:74023092:A:G	rs2030875	A	G	G	Sox3.mouse_HMG_1	15	1	-	5.4355765897967	1.133074792001216	GAACAATGACAAGGTTG
chr3	74271498	74271499	chr3:74271499:C:T	rs2044593	C	T	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr3	74302909	74302910	chr3:74302910:T:C	rs672784	T	C	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr3	74456663	74456664	chr3:74456664:T:G	rs6776512	T	G	G	Sox3.mouse_HMG_1	11	1	-	4.545884469197827	4.350884454144102	CAACAATCCAAATGTTT
chr3	75022136	75022137	chr3:75022137:T:C	rs9857308	T	C	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr3	75192641	75192642	chr3:75192642:A:G	rs12493085	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr3	75778757	75778758	chr3:75778758:T:C	rs62269667	T	C	t	Sox3.mouse_HMG_1	6	1	+	5.31160802889395	-1.3344827407349678	AAACAATGGGAGTGTCA
chr3	75782932	75782933	chr3:75782933:C:T	rs35956540	C	T	c	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr3	76308773	76308774	chr3:76308774:T:C	rs138151664	T	C	T	Sox3.mouse_HMG_1	6	1	-	3.584358053068343	3.584358053068343	GAACAAAATCACTGTTG
chr3	76920325	76920326	chr3:76920326:C:T	rs1167001	C	T	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr3	76920882	76920883	chr3:76920883:T:C	rs1167003	T	C	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr3	77042530	77042531	chr3:77042531:T:G	rs57050685	T	G	T	Sox3.mouse_HMG_1	9	1	-	7.116219064315343	8.569863451144442	GAGCAATTTAATTGTAT
chr3	77183641	77183642	chr3:77183642:C:T	rs114050787	C	T	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr3	77373546	77373547	chr3:77373547:A:C	rs9823357	A	C	c	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr3	77496114	77496115	chr3:77496115:A:T	rs935525	A	T	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr3	77586090	77586091	chr3:77586091:G:A	rs775740	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr3	77586105	77586106	chr3:77586106:C:T	rs77814403	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr3	77619600	77619601	chr3:77619601:G:A	rs77309736	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr3	77693257	77693258	chr3:77693258:G:A	rs776105	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr3	77786384	77786385	chr3:77786385:G:T	rs11717789	G	T	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr3	77887548	77887549	chr3:77887549:T:C	rs60179785	T	C	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr3	78004719	78004720	chr3:78004720:T:C	rs62256171	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr3	78337776	78337777	chr3:78337777:A:G	rs55802591	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr3	78466041	78466042	chr3:78466042:T:C	rs7638863	T	C	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr3	78722545	78722546	chr3:78722546:T:C	rs2608023	T	C	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr3	79297583	79297584	chr3:79297584:T:A	rs964137	T	A	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr3	79424623	79424624	chr3:79424624:C:T	rs4444671	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr3	80440159	80440160	chr3:80440160:G:A	rs12634573	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr3	80549024	80549025	chr3:80549025:T:C	rs2372654	T	C	C	Sox3.mouse_HMG_1	14	1	+	1.5509131326103183	-4.558977782638389	AAACAGAAGCATTGTAT
chr3	81743282	81743283	chr3:81743283:A:G	rs115898774	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr3	81914712	81914713	chr3:81914713:G:A	rs9810377	G	A	G	Sox3.mouse_HMG_1	11	1	+	2.242339160803271	-1.492138266242475	AAACAATAGTAGTCTGC
chr3	81947797	81947798	chr3:81947798:A:C	rs4482683	A	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr3	82165465	82165466	chr3:82165466:A:G	rs1534322	A	G	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr3	83171950	83171951	chr3:83171951:C:T	rs79278193	C	T	C	Sox3.mouse_HMG_1	16	1	-	5.4630124987277835	5.029181054006676	CAACAATAATATTTATG
chr3	84379164	84379165	chr3:84379165:C:A	rs9849282	C	A	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr3	85215115	85215116	chr3:85215116:G:A	rs13078384	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr3	85636236	85636237	chr3:85636237:C:T	rs75699990	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr3	85636257	85636258	chr3:85636258:C:T	rs11714008	C	T	T	Sox3.mouse_HMG_1	9	1	+	3.5686106187743527	3.532904493889785	AGACAATGACACTGATG
chr3	86215954	86215955	chr3:86215955:T:C	rs1949198	T	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr3	86388835	86388836	chr3:86388836:C:T	rs10470568	C	T	C	Sox3.mouse_HMG_1	13	1	-	2.113105391209153	-3.995000398816763	AAAAAATGGCTGTGTTA
chr3	86388852	86388853	chr3:86388853:G:A	rs1603322	G	A	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr3	86868295	86868296	chr3:86868296:C:T	rs9842925	C	T	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr3	86913237	86913238	chr3:86913238:T:C	rs7635070	T	C	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr3	86942359	86942360	chr3:86942360:A:G	rs114455627	A	G	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr3	87133108	87133109	chr3:87133109:A:T	rs62257768	A	T	A	Sox3.mouse_HMG_1	5	1	+	3.2788237997416587	-3.6296312343547514	GAAGAATGTCATTGGTA
chr3	87389771	87389772	chr3:87389772:G:C	rs1389673	G	C	C	Sox3.mouse_HMG_1	7	1	+	8.682256493337118	3.0615643584123458	TAACAACGAAATTGTTA
chr3	87734154	87734155	chr3:87734155:G:A	rs28808595	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr3	87891579	87891580	chr3:87891580:A:G	rs17025121	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr3	87901078	87901079	chr3:87901079:C:T	rs1465648	C	T	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr3	87914635	87914636	chr3:87914636:C:T	rs13320429	C	T	C	Sox3.mouse_HMG_1	13	1	-	1.5560155963228337	-4.552090193703082	GGTCAATGGAATTGTGT
chr3	88334609	88334610	chr3:88334610:G:A	rs11713982	G	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr3	88463051	88463052	chr3:88463052:A:G	rs10511137	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr3	88883700	88883701	chr3:88883701:T:C	rs11720201	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr3	88957392	88957393	chr3:88957393:C:A	rs62271103	C	A	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr3	89180671	89180672	chr3:89180672:T:C	rs55849666	T	C	T	Sox3.mouse_HMG_1	6	1	+	5.546766365326026	-1.0993244043028927	AAACAATTGGACTGTTT
chr3	90499002	90499003	chr3:90499003:A:G	rs1393374252	A	G	.	Sox3.mouse_HMG_1	9	1	+	2.7387502143995004	-1.8442494053218326	CTACAAAAAAAGTGTTT
chr3	94495308	94495309	chr3:94495309:T:C	rs4626098	T	C	.	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr3	94614664	94614665	chr3:94614665:A:G	rs6772592	A	G	A	Sox3.mouse_HMG_1	10	1	+	4.099280395836489	-2.808964763134849	GGACAAGGACATTGTAT
chr3	94699583	94699584	chr3:94699584:A:C	rs116414672	A	C	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr3	94904755	94904756	chr3:94904756:C:T	rs12492825	C	T	c	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr3	95123190	95123191	chr3:95123191:C:T	rs7643795	C	T	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr3	95197761	95197762	chr3:95197762:G:T	rs4857149	G	T	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr3	95293534	95293535	chr3:95293535:G:T	rs7619484	G	T	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr3	95474594	95474595	chr3:95474595:C:A	rs7629387	C	A	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr3	95916604	95916605	chr3:95916605:C:T	rs6808779	C	T	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr3	95957591	95957592	chr3:95957592:A:G	rs1433243	A	G	G	Sox3.mouse_HMG_1	1	1	+	6.217976418341056	1.8905430749383643	AAAAAATGACAATGTTA
chr3	96450261	96450262	chr3:96450262:G:A	rs116669649	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr3	97719259	97719260	chr3:97719260:A:G	rs556979190	A	G	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr3	97824045	97824046	chr3:97824046:C:T	rs80014788	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr3	97840497	97840498	chr3:97840498:T:C	rs7621778	T	C	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr3	97872683	97872684	chr3:97872684:A:G	rs186224760	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr3	98189870	98189871	chr3:98189871:T:G	rs137915854	T	G	T	Sox3.mouse_HMG_1	16	1	-	7.300673028892545	5.098559448749782	CAACAATGCCATTGAAA
chr3	98785096	98785097	chr3:98785097:G:A	rs62278486	G	A	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr3	98801494	98801495	chr3:98801495:G:A	rs72934641	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr3	98869719	98869720	chr3:98869720:A:G	rs10935513	A	G	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr3	98897976	98897977	chr3:98897977:T:C	rs1051287884	T	C	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr3	99250592	99250593	chr3:99250593:C:G	rs6807964	C	G	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr3	99876866	99876867	chr3:99876867:G:A	rs16841785	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr3	100076177	100076178	chr3:100076178:T:G	rs184297350	T	G	T	Sox3.mouse_HMG_1	7	1	-	4.669872941944475	-0.4547488732029884	GATCAAAATTATTGTTT
chr3	100105425	100105426	chr3:100105426:G:T	chr3:100105426:G:T	G	T	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr3	100227977	100227978	chr3:100227978:A:G	rs12492610	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr3	100256613	100256614	chr3:100256614:T:A	rs77760672	T	A	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr3	100311167	100311168	chr3:100311168:C:T	rs73148388	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr3	100634964	100634965	chr3:100634965:T:C	rs10936276	T	C	T	Sox3.mouse_HMG_1	2	1	-	2.7514519804559683	-1.6564829985244944	AAATTATACCAGTGTTA
chr3	101134269	101134270	chr3:101134270:A:T	rs9290314	A	T	A	Sox3.mouse_HMG_1	7	1	+	9.387774699997918	8.346295915033073	AAATAATAATATTGTCT
chr3	101562148	101562149	chr3:101562149:T:C	rs2303476	T	C	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr3	101828123	101828124	chr3:101828124:C:T	rs115429575	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr3	101944472	101944473	chr3:101944473:A:G	rs9881690	A	G	A	Sox3.mouse_HMG_1	2	1	+	4.952450445896938	0.5445154669164755	AGACAATAACAATGTGT
chr3	101944478	101944479	chr3:101944479:A:G	rs77371624	A	G	A	Sox3.mouse_HMG_1	8	1	+	4.952450445896938	3.9260369708863005	AGACAATAACAATGTGT
chr3	102183662	102183663	chr3:102183663:G:T	rs79541358	G	T	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr3	102326447	102326448	chr3:102326448:A:G	rs73157497	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr3	102831323	102831324	chr3:102831324:A:G	rs1694187	A	G	G	Sox3.mouse_HMG_1	9	1	+	4.778486559049913	0.1954869393285809	CAACCATTGAAGTGTTG
chr3	103127492	103127493	chr3:103127493:G:A	rs10511205	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr3	103611286	103611287	chr3:103611287:T:G	rs1511632	T	G	G	Sox3.mouse_HMG_1	14	1	+	3.66471761052809	-2.7619316412539066	CAACTATTCCATTGTGA
chr3	104254975	104254976	chr3:104254976:G:A	rs2895274	G	A	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr3	104596719	104596720	chr3:104596720:C:T	rs60493715	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr3	104716511	104716512	chr3:104716512:T:A	rs1521603	T	A	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr3	104890715	104890716	chr3:104890716:G:A	rs12491580	G	A	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr3	104908202	104908203	chr3:104908203:A:C	rs6790970	A	C	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr3	104957761	104957762	chr3:104957762:A:G	rs7618202	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr3	105147856	105147857	chr3:105147857:T:C	rs56356149	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr3	105293614	105293615	chr3:105293615:A:G	rs9816378	A	G	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr3	105519153	105519154	chr3:105519154:A:G	rs73192737	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr3	105746344	105746345	chr3:105746345:C:A	rs1550711	C	A	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr3	105746863	105746864	chr3:105746864:T:C	rs148156634	T	C	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr3	105800471	105800472	chr3:105800472:G:A	rs2120103	G	A	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr3	106126144	106126145	chr3:106126145:C:T	rs6802299	C	T	C	Sox3.mouse_HMG_1	8	1	-	2.7489198915165884	3.7753333665272235	AAACAATAGGAGTTTTA
chr3	106209247	106209248	chr3:106209248:C:A	rs78776246	C	A	c	Sox3.mouse_HMG_1	6	1	+	3.1877425373378108	2.9253782728703195	GAAAAACGTAATTGTTT
chr3	106338887	106338888	chr3:106338888:T:A	rs6788146	T	A	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr3	106380799	106380800	chr3:106380800:T:A	rs7609937	T	A	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr3	106391036	106391037	chr3:106391037:C:A	rs12494088	C	A	C	Sox3.mouse_HMG_1	13	1	-	6.099766620089088	-0.2693529953064456	AAACAAAACTATTGTGG
chr3	106405891	106405892	chr3:106405892:C:T	rs11710616	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr3	106485887	106485888	chr3:106485888:C:G	rs77988798	C	G	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr3	106630031	106630032	chr3:106630032:T:A	rs9821012	T	A	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr3	106660880	106660881	chr3:106660881:C:A	rs7610058	C	A	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr3	106728716	106728717	chr3:106728717:C:T	rs73192967	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr3	106829111	106829112	chr3:106829112:G:C	rs9829110	G	C	g	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr3	106844736	106844737	chr3:106844737:A:G	rs2682519	A	G	a	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr3	107198735	107198736	chr3:107198736:C:A	rs73211626	C	A	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr3	107198737	107198738	chr3:107198738:A:G	rs375688955	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr3	107366148	107366149	chr3:107366149:G:A	rs10933901	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr3	107893150	107893151	chr3:107893151:G:T	rs190371971	G	T	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr3	107986900	107986901	chr3:107986901:T:A	rs709470	T	A	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr3	108013076	108013077	chr3:108013077:T:C	rs9835822	T	C	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr3	108029076	108029077	chr3:108029077:G:T	rs34709920	G	T	G	Sox3.mouse_HMG_1	8	1	+	3.151878328067295	3.358470564609397	AAGCAATGGAAATGTCT
chr3	108223753	108223754	chr3:108223754:G:T	rs9838839	G	T	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr3	108975192	108975193	chr3:108975193:G:A	rs2922138	G	A	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr3	110242346	110242347	chr3:110242347:A:G	rs9883805	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr3	110352997	110352998	chr3:110352998:C:G	rs4597746	C	G	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr3	110353023	110353024	chr3:110353024:G:A	rs183810085	G	A	G	Sox3.mouse_HMG_1	8	1	-	2.597374112534238	2.9101133374447805	TAACAATGCTGTTCTTA
chr3	110353051	110353052	chr3:110353052:T:C	rs77524328	T	C	t	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr3	110492794	110492795	chr3:110492795:A:G	rs77957848	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr3	110527193	110527194	chr3:110527194:C:T	rs75820614	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr3	110527228	110527229	chr3:110527229:G:T	rs11925811	G	T	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr3	111210243	111210244	chr3:111210244:A:G	rs57976070	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr3	111237058	111237059	chr3:111237059:G:A	rs36019095	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr3	111237096	111237097	chr3:111237097:C:T	rs62273847	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr3	111277523	111277524	chr3:111277524:A:T	rs115225033	A	T	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr3	111518932	111518933	chr3:111518933:A:C	rs17202754	A	C	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr3	111527036	111527037	chr3:111527037:C:A	rs9883698	C	A	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr3	111546578	111546579	chr3:111546579:T:C	rs62273542	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr3	111619488	111619489	chr3:111619489:A:G	rs6780729	A	G	A	Sox3.mouse_HMG_1	10	1	+	2.010652310506361	-4.897592848464977	AAACATTTACATTGAAG
chr3	111767704	111767705	chr3:111767705:T:C	rs9850851	T	C	T	Sox3.mouse_HMG_1	4	1	-	3.6497536786983336	-3.1625714132789	GAACAATGACAGTTATA
chr3	111768555	111768556	chr3:111768556:A:G	rs78339152	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr3	111835577	111835578	chr3:111835578:C:T	rs60787620	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr3	111835578	111835579	chr3:111835579:G:A	rs10804493	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr3	111851282	111851283	chr3:111851283:A:C	rs1282975	A	C	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr3	111858928	111858929	chr3:111858929:C:G	rs9846313	C	G	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr3	111858939	111858940	chr3:111858940:C:G	rs13101043	C	G	C	Sox3.mouse_HMG_1	7	1	-	1.8031659568984064	-3.8175261780263647	AAACAATGCTGATGTAG
chr3	111903884	111903885	chr3:111903885:G:T	rs12495997	G	T	g	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr3	112333985	112333986	chr3:112333986:G:A	rs73856005	G	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr3	112362537	112362538	chr3:112362538:G:A	rs112007507	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr3	112399681	112399682	chr3:112399682:A:G	rs9878780	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr3	112487278	112487279	chr3:112487279:T:C	rs4682411	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr3	112561148	112561149	chr3:112561149:T:A	rs2705505	T	A	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr3	112633100	112633101	chr3:112633101:T:C	rs16859875	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr3	112794634	112794635	chr3:112794635:A:G	rs10934187	A	G	a	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr3	112857024	112857025	chr3:112857025:A:T	rs554470402	A	T	A	Sox3.mouse_HMG_1	6	1	-	3.5713114565268	-3.33714357756961	GAAAAATGGCATTGCTA
chr3	113291455	113291456	chr3:113291456:G:A	rs17321330	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr3	113498926	113498927	chr3:113498927:C:T	rs149273170	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr3	113758839	113758840	chr3:113758840:G:T	chr3:113758840:G:T	G	T	G	Sox3.mouse_HMG_1	3	1	-	1.3718981883165267	-5.352815274547177	TGACAAAGGAAGTGTTG
chr3	113805053	113805054	chr3:113805054:C:T	rs3773681	C	T	C	Sox3.mouse_HMG_1	13	1	-	3.608692869374564	-2.499412920651352	AAACAATGAAACAGTAT
chr3	113912798	113912799	chr3:113912799:A:T	rs77158440	A	T	a	Sox3.mouse_HMG_1	12	1	-	2.4800954398627866	-3.108096633770325	ACACAATCATAGTGTCT
chr3	114081152	114081153	chr3:114081153:A:G	rs140599908	A	G	G	Sox3.mouse_HMG_1	7	1	+	3.272694546633161	3.768764866410472	GAACAAGATCATTTTTG
chr3	114336338	114336339	chr3:114336339:C:T	rs11929619	C	T	C	Sox3.mouse_HMG_1	16	1	-	1.9503082437295178	1.5164767990084107	TTAAAATAGCAGTGTTG
chr3	114983209	114983210	chr3:114983210:A:G	rs10804515	A	G	A	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr3	115437276	115437277	chr3:115437277:A:C	rs570758393	A	C	A	Sox3.mouse_HMG_1	7	1	+	1.656021424777881	-3.468600390369581	AAACAACAATGTTGTAG
chr3	115437301	115437302	chr3:115437302:C:G	rs1392257	C	G	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr3	115667116	115667117	chr3:115667117:C:G	rs34700911	C	G	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr3	115674390	115674391	chr3:115674391:C:T	rs28399382	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr3	115706297	115706298	chr3:115706298:C:G	rs731653	C	G	C	Sox3.mouse_HMG_1	13	1	-	2.8725339095618705	-3.235571880464046	GAAAAATTCCCTTGTTT
chr3	115820008	115820009	chr3:115820009:G:A	rs10934306	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr3	116044789	116044790	chr3:116044790:C:T	rs28735793	C	T	T	Sox3.mouse_HMG_1	9	1	+	1.354012931847373	1.3183068069628043	GAACAAAACCTGTGTTT
chr3	116814896	116814897	chr3:116814897:G:C	rs7640484	G	C	G	Sox3.mouse_HMG_1	13	1	-	5.20358138222567	11.311687172251586	GAATAATTACATTCTTT
chr3	117003482	117003483	chr3:117003483:A:G	rs9846364	A	G	A	Sox3.mouse_HMG_1	6	1	-	2.8641995017270516	-3.78189126790187	AAATTATAAAAGTGTTG
chr3	117168576	117168577	chr3:117168577:C:T	rs9880688	C	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr3	117252355	117252356	chr3:117252356:G:C	rs6775136	G	C	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr3	117477422	117477423	chr3:117477423:T:C	rs73863057	T	C	C	Sox3.mouse_HMG_1	5	1	-	6.016213959232253	-0.7099195180702038	AAACTAGGACATTGTTG
chr3	117518469	117518470	chr3:117518470:T:C	rs1501874	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr3	117618730	117618731	chr3:117618731:T:C	rs1910041	T	C	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr3	117625152	117625153	chr3:117625153:G:A	rs4146331	G	A	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr3	119239355	119239356	chr3:119239356:G:A	rs6438510	G	A	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr3	119243895	119243896	chr3:119243896:T:G	rs58488777	T	G	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr3	119258803	119258804	chr3:119258804:T:A	rs9837492	T	A	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr3	119660024	119660025	chr3:119660025:G:A	rs1880040	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr3	119912332	119912333	chr3:119912333:A:G	rs78802922	A	G	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr3	120093711	120093712	chr3:120093712:G:C	rs72546688	G	C	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr3	120159023	120159024	chr3:120159024:G:A	rs11712811	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr3	120180240	120180241	chr3:120180241:C:G	rs979684	C	G	C	Sox3.mouse_HMG_1	7	1	-	2.504169340820718	-3.1165227941040574	TGATAATGTAAGTGTTG
chr3	120313899	120313900	chr3:120313900:C:T	rs191197813	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr3	120433202	120433203	chr3:120433203:C:G	rs1733299	C	G	G	Sox3.mouse_HMG_1	3	1	+	6.284552470050646	-0.6224825496070058	AAACAATAAAAATATTT
chr3	120652941	120652942	chr3:120652942:T:A	rs2551605	T	A	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr3	120903397	120903398	chr3:120903398:C:T	rs2220255	C	T	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr3	121552459	121552460	chr3:121552460:G:T	rs1877969	G	T	G	Sox3.mouse_HMG_1	13	1	+	1.8065692896949939	-4.562550325700542	AGACATTTACAGTGTAT
chr3	121575006	121575007	chr3:121575007:T:C	rs66494182	T	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr3	121707807	121707808	chr3:121707808:A:G	rs11710169	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.582899952737416	-3.1432335245650402	TTACAATGGCAGAGTTG
chr3	122068113	122068114	chr3:122068114:C:A	rs972437852	C	A	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr3	122259225	122259226	chr3:122259226:G:T	rs3804590	G	T	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr3	122410026	122410027	chr3:122410027:G:A	rs17266816	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr3	122857344	122857345	chr3:122857345:A:G	rs16833588	A	G	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr3	122975679	122975680	chr3:122975680:A:G	rs895075	A	G	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr3	123068665	123068666	chr3:123068666:A:T	rs7614797	A	T	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr3	123069511	123069512	chr3:123069512:T:C	rs9873177	T	C	T	Sox3.mouse_HMG_1	12	1	+	5.455105712847073	-0.7513598723707787	GAACAATTGAAATGTAT
chr3	123471883	123471884	chr3:123471884:C:T	rs35000036	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr3	123620707	123620708	chr3:123620708:C:T	rs565233007	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr3	123942557	123942558	chr3:123942558:C:T	rs2141605	C	T	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr3	123949738	123949739	chr3:123949739:C:A	rs7619302	C	A	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr3	124169630	124169631	chr3:124169631:G:T	rs4677919	G	T	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr3	124261374	124261375	chr3:124261375:C:T	rs4677922	C	T	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr3	124261400	124261401	chr3:124261401:G:A	rs533527207	G	A	G	Sox3.mouse_HMG_1	16	1	+	2.256784265313683	1.8229528205925762	ACACAATGAAATAGTCG
chr3	124261418	124261419	chr3:124261419:A:G	rs112124364	A	G	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr3	124714702	124714703	chr3:124714703:G:A	rs893830	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr3	124760732	124760733	chr3:124760733:C:T	rs9834841	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr3	124760733	124760734	chr3:124760734:T:A	rs965063	T	A	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr3	124760861	124760862	chr3:124760862:G:T	rs74659236	G	T	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr3	124885841	124885842	chr3:124885842:C:A	rs1007857	C	A	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr3	125046316	125046317	chr3:125046317:C:T	rs4679276	C	T	C	Sox3.mouse_HMG_1	11	1	-	4.726070998726383	0.9915935716806361	GAGCAATAACAGTATTG
chr3	125062998	125062999	chr3:125062999:C:T	rs55931512	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr3	125151171	125151172	chr3:125151172:T:C	rs543001040	T	C	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr3	125161151	125161152	chr3:125161152:T:C	rs632682	T	C	C	Sox3.mouse_HMG_1	2	1	-	5.513974445222514	1.1060394662420516	AAATGATAACATTGTTA
chr3	125915106	125915107	chr3:125915107:C:T	rs2134515	C	T	.	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr3	125923392	125923393	chr3:125923393:A:G	rs4334595	A	G	.	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr3	125923445	125923446	chr3:125923446:T:C	rs111324805	T	C	.	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr3	126133627	126133628	chr3:126133628:T:C	rs2365001	T	C	C	Sox3.mouse_HMG_1	15	1	+	4.084771846737525	-0.21772995105795778	GGACTATTCTATTGTTA
chr3	127104595	127104596	chr3:127104596:T:A	rs17701673	T	A	T	Sox3.mouse_HMG_1	1	1	-	2.916709802899642	-1.9736291233745575	CATCAATGTTTGTGTTT
chr3	127119625	127119626	chr3:127119626:A:G	rs11711126	A	G	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr3	127169401	127169402	chr3:127169402:C:G	rs113945905	C	G	c	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr3	127552174	127552175	chr3:127552175:A:C	rs72965719	A	C	A	Sox3.mouse_HMG_1	12	1	-	2.420811137674841	-4.147316932992783	AGGCAATTAAACTGTTT
chr3	127728625	127728626	chr3:127728626:C:T	rs114023838	C	T	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr3	128040370	128040371	chr3:128040371:T:A	rs1469658	T	A	A	Sox3.mouse_HMG_1	1	1	-	1.4668278502369652	-3.4235110760372356	AAAATATGCCATTGTGT
chr3	128060789	128060790	chr3:128060790:G:T	rs9849210	G	T	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr3	128318699	128318700	chr3:128318700:G:T	rs113134458	G	T	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr3	128394468	128394469	chr3:128394469:A:G	rs78278710	A	G	A	Sox3.mouse_HMG_1	8	1	+	3.6881585715359027	2.6617450965252676	TAAAAATGACATTTTTA
chr3	128456697	128456698	chr3:128456698:G:A	rs77018539	G	A	G	Sox3.mouse_HMG_1	12	1	-	2.485578030299295	8.692043615517147	CAACAATCACATCGTCT
chr3	128532474	128532475	chr3:128532475:C:T	rs73862234	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr3	128711065	128711066	chr3:128711066:C:T	rs73196954	C	T	C	Sox3.mouse_HMG_1	7	1	-	0.9017264931620451	0.40565617338473425	GGACATTGACAGTGTGT
chr3	129255134	129255135	chr3:129255135:A:C	rs4927912	A	C	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr3	129255140	129255141	chr3:129255141:C:T	rs4927911	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr3	129297030	129297031	chr3:129297031:A:C	rs58516720	A	C	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr3	129308314	129308315	chr3:129308315:T:G	rs6775488	T	G	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr3	129412938	129412939	chr3:129412939:C:T	rs60166811	C	T	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr3	129439191	129439192	chr3:129439192:G:A	rs114422006	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr3	129469481	129469482	chr3:129469482:G:A	rs7612530	G	A	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr3	129651895	129651896	chr3:129651896:A:G	rs77017646	A	G	A	Sox3.mouse_HMG_1	11	1	+	2.143583510166807	5.878060937212554	GAGCAATGCCAATGATT
chr3	130505784	130505785	chr3:130505785:T:G	rs2645949	T	G	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr3	130505797	130505798	chr3:130505798:C:A	rs2645950	C	A	A	Sox3.mouse_HMG_1	3	1	+	2.6322294884264137	-4.092483974437283	AAACAATGAACCTGTAT
chr3	130533565	130533566	chr3:130533566:T:C	rs9283579	T	C	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr3	130759974	130759975	chr3:130759975:T:A	rs187742787	T	A	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr3	130759989	130759990	chr3:130759990:G:A	rs76580213	G	A	G	Sox3.mouse_HMG_1	6	1	+	2.9016061185111273	2.9016061185111273	AAACACGGAAAGTGTTT
chr3	130850712	130850713	chr3:130850713:T:G	rs1316658	T	G	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr3	130930852	130930853	chr3:130930853:A:G	rs864072	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr3	131217137	131217138	chr3:131217138:A:G	rs76094245	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr3	131715195	131715196	chr3:131715196:G:A	rs73220429	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr3	131812483	131812484	chr3:131812484:T:C	rs16837858	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr3	131898582	131898583	chr3:131898583:C:T	rs4854629	C	T	T	Sox3.mouse_HMG_1	11	1	-	1.519248620795721	-2.215228806250026	CAACATTTTCAGTGTCA
chr3	131931888	131931889	chr3:131931889:T:C	rs1870716	T	C	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr3	131958336	131958337	chr3:131958337:A:G	rs2699850	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr3	131977258	131977259	chr3:131977259:C:T	rs16838174	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr3	132071740	132071741	chr3:132071741:C:T	rs11720820	C	T	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr3	132135129	132135130	chr3:132135130:A:C	rs73000830	A	C	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr3	132260662	132260663	chr3:132260663:A:T	rs73211995	A	T	A	Sox3.mouse_HMG_1	1	1	+	3.217705788090771	-1.6726331381834303	CAACAATTATAGAATTT
chr3	132260670	132260671	chr3:132260671:T:C	rs11717859	T	C	T	Sox3.mouse_HMG_1	9	1	+	3.217705788090771	3.2534119129753405	CAACAATTATAGAATTT
chr3	132317776	132317777	chr3:132317777:G:C	chr3:132317777:G:C	G	C	g	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr3	132339610	132339611	chr3:132339611:T:C	rs55950941	T	C	C	Sox3.mouse_HMG_1	5	1	-	4.342510215063084	-2.3836232622393716	AACCAATAACTGTGTTT
chr3	132339625	132339626	chr3:132339626:G:T	rs309997	G	T	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr3	132934500	132934501	chr3:132934501:C:T	rs10804615	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr3	132963884	132963885	chr3:132963885:A:C	rs60368871	A	C	C	Sox3.mouse_HMG_1	4	1	+	5.246298897475246	-1.4790148175123607	TAAGAATAACATTGTGG
chr3	133160274	133160275	chr3:133160275:A:G	rs112358350	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr3	133237798	133237799	chr3:133237799:C:A	rs2370047	C	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr3	133302105	133302106	chr3:133302106:A:G	rs16840202	A	G	A	Sox3.mouse_HMG_1	9	1	-	1.584876790385762	1.6205829152703297	AGACAATGATAGTGGCA
chr3	133302123	133302124	chr3:133302124:A:T	rs4600815	A	T	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr3	133394773	133394774	chr3:133394774:T:C	chr3:133394774:T:C	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr3	133444479	133444480	chr3:133444480:A:G	rs78039258	A	G	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr3	133444497	133444498	chr3:133444498:C:T	rs72980102	C	T	C	Sox3.mouse_HMG_1	7	1	-	7.10332628069711	6.607255960919799	AGACAACGACAGTGTTT
chr3	133868631	133868632	chr3:133868632:T:C	rs9845729	T	C	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr3	133924157	133924158	chr3:133924158:T:C	rs9289459	T	C	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr3	134904857	134904858	chr3:134904858:A:T	rs10935141	A	T	A	Sox3.mouse_HMG_1	16	1	-	1.8647652337143108	0.4650821482360914	AAACAAGAACATTTTGT
chr3	135216810	135216811	chr3:135216811:A:G	rs34744364	A	G	g	Sox3.mouse_HMG_1	15	1	-	4.553683430831902	0.2511816330364188	TAACAATGGAAATGATT
chr3	135216830	135216831	chr3:135216831:T:C	rs28707535	T	C	c	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr3	135216845	135216846	chr3:135216846:G:C	rs34243073	G	C	g	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr3	135514151	135514152	chr3:135514152:G:A	rs9864846	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr3	135566343	135566344	chr3:135566344:G:A	rs35126997	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr3	135739484	135739485	chr3:135739485:A:G	rs55726529	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr3	135983802	135983803	chr3:135983803:C:T	rs6439605	C	T	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr3	136378733	136378734	chr3:136378734:T:C	rs655836	T	C	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr3	136933291	136933292	chr3:136933292:A:G	rs73231966	A	G	A	Sox3.mouse_HMG_1	5	1	+	5.867975843598806	-0.8581576337036501	TAACAATGGTATTGAGA
chr3	137032511	137032512	chr3:137032512:G:A	rs1009879791	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr3	137042232	137042233	chr3:137042233:T:G	rs9845921	T	G	T	Sox3.mouse_HMG_1	15	1	+	1.682811295170529	-2.8836075624355066	AAGCAGTGTCATGGTTT
chr3	137066954	137066955	chr3:137066955:G:A	rs1023765	G	A	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr3	137706863	137706864	chr3:137706864:A:G	rs73225410	A	G	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr3	137785841	137785842	chr3:137785842:G:T	rs6764959	G	T	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr3	138333626	138333627	chr3:138333627:A:G	rs116161029	A	G	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr3	138431195	138431196	chr3:138431196:C:T	rs114971416	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr3	138594840	138594841	chr3:138594841:C:G	rs146560881	C	G	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr3	138594850	138594851	chr3:138594851:C:A	rs141206666	C	A	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr3	138923636	138923637	chr3:138923637:G:A	rs116165602	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr3	138923670	138923671	chr3:138923671:T:A	rs188373213	T	A	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr3	138959287	138959288	chr3:138959288:T:C	rs66475108	T	C	C	Sox3.mouse_HMG_1	8	1	-	4.063966002929875	3.037552527919238	AAGCAATGACAGTCTAT
chr3	139309772	139309773	chr3:139309773:C:T	rs114099356	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr3	139532542	139532543	chr3:139532543:G:A	rs3772868	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr3	139639414	139639415	chr3:139639415:A:C	rs6439872	A	C	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr3	139656044	139656045	chr3:139656045:T:C	chr3:139656045:T:C	T	C	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr3	139797961	139797962	chr3:139797962:T:G	rs6777158	T	G	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr3	140188691	140188692	chr3:140188692:A:G	rs11713717	A	G	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr3	140570969	140570970	chr3:140570970:G:A	rs10935387	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr3	140758985	140758986	chr3:140758986:A:G	rs9864302	A	G	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr3	141109634	141109635	chr3:141109635:A:G	rs1426956	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.4329974194702	-3.213093350158716	AAACAATGATAAAGATT
chr3	141274868	141274869	chr3:141274869:T:C	rs11715472	T	C	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr3	141326101	141326102	chr3:141326102:C:T	rs73232970	C	T	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr3	141454158	141454159	chr3:141454159:T:C	rs60759545	T	C	T	Sox3.mouse_HMG_1	2	1	-	3.1603812266030866	-1.2475537523773772	CAATGATAATAGTGTTT
chr3	141680110	141680111	chr3:141680111:T:C	rs7639470	T	C	T	Sox3.mouse_HMG_1	10	1	-	2.3018952718308463	-4.606349887140493	AAGCATTCACATTGTTG
chr3	142987497	142987498	chr3:142987498:A:G	rs251486	A	G	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr3	143012707	143012708	chr3:143012708:G:A	rs112578400	G	A	T	Sox3.mouse_HMG_1	5	1	-	2.486363520101377	2.391053340297052	GAACACGAACAGTGTTT
chr3	143127527	143127528	chr3:143127528:A:G	rs6794836	A	G	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr3	143190321	143190322	chr3:143190322:T:G	rs834910	T	G	G	Sox3.mouse_HMG_1	8	1	-	5.851675947824447	4.719115484445371	AAATAAAAACATTGTTG
chr3	143443816	143443817	chr3:143443817:T:C	rs55864696	T	C	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr3	143538386	143538387	chr3:143538387:G:A	rs114080254	G	A	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr3	143736376	143736377	chr3:143736377:G:A	rs73154705	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr3	143993094	143993095	chr3:143993095:C:T	rs114891426	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr3	144037344	144037345	chr3:144037345:C:G	rs1025984	C	G	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr3	144552769	144552770	chr3:144552770:T:C	rs2010077	T	C	T	Sox3.mouse_HMG_1	12	1	+	3.6411583790130884	-2.5653072062047633	AAACAAGTTTAATGTTA
chr3	145002912	145002913	chr3:145002913:C:T	rs9875246	C	T	C	Sox3.mouse_HMG_1	3	1	+	5.541976350035141	-0.44079976809917987	GATCAATGTCATGGTTT
chr3	145337094	145337095	chr3:145337095:A:G	rs57772184	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr3	145532361	145532362	chr3:145532362:C:T	rs2177286	C	T	A	Sox3.mouse_HMG_1	6	1	-	4.701599930451037	4.701599930451037	TAGCAAGGATAGTGTTT
chr3	145533800	145533801	chr3:145533801:A:G	rs478955	A	G	A	Sox3.mouse_HMG_1	15	1	+	9.267753960038842	8.198178724225277	AAACAAAAATATTGTAT
chr3	145533820	145533821	chr3:145533821:G:A	chr3:145533821:G:A	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr3	145602779	145602780	chr3:145602780:C:A	rs17825915	C	A	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr3	145698410	145698411	chr3:145698411:T:C	chr3:145698411:T:C	T	C	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr3	145936557	145936558	chr3:145936558:G:A	rs34135782	G	A	A	Sox3.mouse_HMG_1	11	1	+	4.710719224902667	0.9762417978569203	ACACAAGGTCAGTGTTT
chr3	146019694	146019695	chr3:146019695:A:G	rs1449453	A	G	G	Sox3.mouse_HMG_1	15	1	-	3.4075053363113406	-0.8949964614841426	AAATAATATTAGTTTTG
chr3	146092223	146092224	chr3:146092224:A:C	rs3792340	A	C	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr3	146117721	146117722	chr3:146117722:T:G	rs6799720	T	G	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr3	146222495	146222496	chr3:146222496:C:G	rs2036980	C	G	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr3	146313453	146313454	chr3:146313454:T:C	rs1849260	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr3	146375397	146375398	chr3:146375398:C:T	rs74886715	C	T	C	Sox3.mouse_HMG_1	6	1	-	4.503564397890088	4.503564397890088	AAACAAGGCCAGTGTGG
chr3	146375421	146375422	chr3:146375422:C:T	rs113820024	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr3	146391566	146391567	chr3:146391567:A:G	rs13064298	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr3	146550958	146550959	chr3:146550959:T:C	rs75173624	T	C	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr3	146626969	146626970	chr3:146626970:T:C	rs73156994	T	C	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr3	146646397	146646398	chr3:146646398:A:G	rs6799360	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr3	146680953	146680954	chr3:146680954:G:A	rs56158154	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr3	146681329	146681330	chr3:146681330:T:G	rs6804783	T	G	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr3	146894127	146894128	chr3:146894128:T:C	rs12633225	T	C	T	Sox3.mouse_HMG_1	6	1	+	3.263123267395773	-3.3829675022331434	AAACAATGACATTTCAG
chr3	148107775	148107776	chr3:148107776:A:C	rs1462649	A	C	C	Sox3.mouse_HMG_1	12	1	-	4.2076770114823026	-2.3604510591853205	AAACAAAAGTCTTGTTG
chr3	148149547	148149548	chr3:148149548:C:T	rs75225963	C	T	C	Sox3.mouse_HMG_1	1	1	+	3.302196434556559	4.04971240454347	GCACAAAGTTAGTGTTT
chr3	148206633	148206634	chr3:148206634:C:T	rs116515469	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr3	148227880	148227881	chr3:148227881:A:G	rs76282928	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr3	148460064	148460065	chr3:148460065:T:C	rs766955629	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.5740098978357393	-3.535881017412968	AAAGAACAAAAGTGTTT
chr3	148643833	148643834	chr3:148643834:G:A	rs12496215	G	A	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr3	148727205	148727206	chr3:148727206:T:C	rs12721331	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr3	148772493	148772494	chr3:148772494:C:T	rs2934114	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr3	148955643	148955644	chr3:148955644:A:T	rs551976098	A	T	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr3	149195338	149195339	chr3:149195339:G:T	rs13072552	G	T	g	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr3	149324229	149324230	chr3:149324230:G:A	rs115360733	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr3	149451207	149451208	chr3:149451208:G:A	rs76442224	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr3	149451213	149451214	chr3:149451214:A:G	rs78520378	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr3	149464767	149464768	chr3:149464768:G:T	rs6794608	G	T	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr3	149481804	149481805	chr3:149481805:T:G	rs13067320	T	G	T	Sox3.mouse_HMG_1	7	1	+	5.10758915808705	6.645138262829205	AAACATTTGCAGTGTAT
chr3	149534721	149534722	chr3:149534722:T:C	rs12630331	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr3	149540199	149540200	chr3:149540200:C:G	rs114457234	C	G	C	Sox3.mouse_HMG_1	13	1	-	10.894263195637697	4.786157405611782	GAGCAATTGCATTGTTG
chr3	149559710	149559711	chr3:149559711:A:T	rs713371	A	T	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr3	149589226	149589227	chr3:149589227:G:C	rs73868029	G	C	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr3	149881994	149881995	chr3:149881995:C:T	rs9864069	C	T	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr3	150069188	150069189	chr3:150069189:T:C	rs67300977	T	C	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr3	150105982	150105983	chr3:150105983:C:A	rs16862469	C	A	C	Sox3.mouse_HMG_1	13	1	-	5.969432987147354	-0.39968662824818046	CAGCAATGACAGTGCTT
chr3	150348115	150348116	chr3:150348116:A:T	rs1562788	A	T	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr3	150371697	150371698	chr3:150371698:C:T	rs78213229	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr3	150775362	150775363	chr3:150775363:C:T	rs113444499	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr3	151217582	151217583	chr3:151217583:A:G	rs1554120	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr3	151361252	151361253	chr3:151361253:A:G	rs11925037	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.882890107051816	-1.1745660019085378	AAACAGCAAAATTGTTT
chr3	151477135	151477136	chr3:151477136:T:G	rs4312631	T	G	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr3	151491732	151491733	chr3:151491733:A:G	rs6785746	A	G	G	Sox3.mouse_HMG_1	5	1	+	2.3730013603377693	-4.353132116964686	GAAGAATATCAGTATTT
chr3	151491763	151491764	chr3:151491764:T:C	rs6774270	T	C	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr3	151548483	151548484	chr3:151548484:A:G	rs73022347	A	G	A	Sox3.mouse_HMG_1	7	1	+	4.295815033369108	4.791885353146418	GCATAATAAAATTGTTG
chr3	151596463	151596464	chr3:151596464:A:T	rs9858372	A	T	A	Sox3.mouse_HMG_1	8	1	+	1.6202916132195597	0.8004703747510267	AAACAAAGATATTATGG
chr3	151596472	151596473	chr3:151596473:T:G	rs9840743	T	G	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr3	151816800	151816801	chr3:151816801:C:A	rs2166264	C	A	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr3	151837884	151837885	chr3:151837885:T:C	rs35158710	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr3	151864799	151864800	chr3:151864800:G:C	rs140616383	G	C	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr3	152209590	152209591	chr3:152209591:A:T	rs1863517	A	T	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr3	152209596	152209597	chr3:152209597:A:G	rs1863516	A	G	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr3	152322600	152322601	chr3:152322601:A:C	rs76110651	A	C	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr3	152376411	152376412	chr3:152376412:T:G	rs6768807	T	G	T	Sox3.mouse_HMG_1	9	1	+	2.9644584584952653	-3.036479423170598	ATACAGTGATATAGTTT
chr3	152655779	152655780	chr3:152655780:C:A	rs6768283	C	A	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr3	152657160	152657161	chr3:152657161:T:A	rs1878432	T	A	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr3	152975674	152975675	chr3:152975675:G:A	rs11920980	G	A	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr3	153004185	153004186	chr3:153004186:C:T	rs9883654	C	T	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr3	153057812	153057813	chr3:153057813:A:G	rs2177302	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr3	153209074	153209075	chr3:153209075:C:T	rs7611034	C	T	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr3	153624998	153624999	chr3:153624999:T:C	rs566925389	T	C	T	Sox3.mouse_HMG_1	14	1	+	11.235857775848062	5.125966860599355	GTACAATTCTATTGTTT
chr3	153689008	153689009	chr3:153689009:T:C	rs9835985	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr3	153752432	153752433	chr3:153752433:T:C	rs514105	T	C	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr3	153752473	153752474	chr3:153752474:C:T	rs500230	C	T	c	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr3	153761261	153761262	chr3:153761262:G:A	rs114741504	G	A	g	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr3	154241238	154241239	chr3:154241239:G:T	rs181443	G	T	G	Sox3.mouse_HMG_1	13	1	+	4.738215172886633	-1.6309044425089017	GACCAATGTTTTTGTTT
chr3	154384544	154384545	chr3:154384545:A:C	rs696855	A	C	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr3	154678268	154678269	chr3:154678269:T:C	rs150057977	T	C	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr3	155026898	155026899	chr3:155026899:A:T	rs113076940	A	T	A	Sox3.mouse_HMG_1	0	1	+	2.4979281160137146	0.4747737906974695	AAACAAAACAAGAGTTT
chr3	155231772	155231773	chr3:155231773:C:T	rs6778088	C	T	T	Sox3.mouse_HMG_1	8	1	+	2.509639432464825	2.822378657375367	CAAAAATGCTTTTGTTA
chr3	155231797	155231798	chr3:155231798:C:T	rs144446160	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr3	155554413	155554414	chr3:155554414:G:A	rs359550	G	A	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr3	155753259	155753260	chr3:155753260:T:C	rs9818179	T	C	T	Sox3.mouse_HMG_1	4	1	-	2.468199163162669	-4.344125928814567	TAGCAATGAAATTGAGT
chr3	156016763	156016764	chr3:156016764:T:G	rs7618886	T	G	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr3	156037537	156037538	chr3:156037538:G:A	rs9848466	G	A	g	Sox3.mouse_HMG_1	11	1	-	4.397501715879449	10.454957824839804	AAACAATTTCACTGGTG
chr3	156037564	156037565	chr3:156037565:C:T	rs113841314	C	T	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr3	156184146	156184147	chr3:156184147:T:C	rs13065597	T	C	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr3	156335521	156335522	chr3:156335522:T:C	rs6795493	T	C	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr3	156388435	156388436	chr3:156388436:T:C	rs3755629	T	C	T	Sox3.mouse_HMG_1	16	1	+	4.737306055335605	1.1355093897146227	TAGCAAGGACAGTGTTT
chr3	156443078	156443079	chr3:156443079:A:G	rs6441069	A	G	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr3	156460133	156460134	chr3:156460134:G:A	rs3817460	G	A	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr3	156617881	156617882	chr3:156617882:G:C	rs59343105	G	C	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr3	156617923	156617924	chr3:156617924:T:C	rs2176618	T	C	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr3	156794063	156794064	chr3:156794064:A:C	rs62277147	A	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr3	157066991	157066992	chr3:157066992:C:T	rs116390043	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr3	157161022	157161023	chr3:157161023:G:A	rs879945711	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr3	157180431	157180432	chr3:157180432:C:T	rs62276465	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr3	157532965	157532966	chr3:157532966:A:G	rs11708768	A	G	a	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr3	157702186	157702187	chr3:157702187:T:C	rs7609979	T	C	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr3	158104879	158104880	chr3:158104880:T:C	rs1915940	T	C	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr3	158166626	158166627	chr3:158166627:G:T	rs1610269	G	T	T	Sox3.mouse_HMG_1	10	1	-	3.431253350105159	9.99590880468642	GAATAATGAACTTGTTA
chr3	158168130	158168131	chr3:158168131:C:T	rs73164094	C	T	C	Sox3.mouse_HMG_1	0	1	+	2.9021189343394096	2.468556121375365	CTACAATAGCAGCGTTG
chr3	158168142	158168143	chr3:158168143:C:T	rs7617503	C	T	T	Sox3.mouse_HMG_1	12	1	+	2.9021189343394096	9.108584519557262	CTACAATAGCAGCGTTG
chr3	158370693	158370694	chr3:158370694:G:C	rs73017444	G	C	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr3	158782769	158782770	chr3:158782770:C:T	rs6761989	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr3	158801173	158801174	chr3:158801174:T:C	rs1381462	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr3	159322375	159322376	chr3:159322376:C:T	rs1012724329	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr3	159379052	159379053	chr3:159379053:C:T	rs34566304	C	T	C	Sox3.mouse_HMG_1	9	1	+	1.4882141369323718	1.452508012047803	TAACAGTGGCTGTGTTT
chr3	159549010	159549011	chr3:159549011:C:G	rs9637371	C	G	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr3	159634353	159634354	chr3:159634354:G:A	rs9832970	G	A	A	Sox3.mouse_HMG_1	11	1	+	5.992232720134791	2.257755293089044	AAACTATGTAAGTGTAT
chr3	159751465	159751466	chr3:159751466:T:C	rs532541212	T	C	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr3	160442132	160442133	chr3:160442133:T:C	rs11706810	T	C	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr3	160784674	160784675	chr3:160784675:A:G	rs78541969	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr3	160793781	160793782	chr3:160793782:A:G	rs140457474	A	G	A	Sox3.mouse_HMG_1	2	1	+	5.5076955169679405	1.0997605379874815	GAACAATGGCAGGGTTC
chr3	160936592	160936593	chr3:160936593:T:C	rs73158217	T	C	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr3	161108916	161108917	chr3:161108917:C:A	rs544851735	C	A	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr3	161108941	161108942	chr3:161108942:T:G	rs6775897	T	G	T	Sox3.mouse_HMG_1	10	1	-	1.459444294964893	-5.105211159616369	GCACAATGACAGTGCAT
chr3	162041422	162041423	chr3:162041423:A:C	rs1397238	A	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr3	162722232	162722233	chr3:162722233:T:A	rs9873151	T	A	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr3	163205404	163205405	chr3:163205405:T:A	rs56273142	T	A	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr3	163368452	163368453	chr3:163368453:A:G	rs56341096	A	G	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr3	164113098	164113099	chr3:164113099:A:G	rs11711705	A	G	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr3	164186361	164186362	chr3:164186362:A:C	rs788899	A	C	C	Sox3.mouse_HMG_1	8	1	+	12.066918376381613	10.934357913002538	AAACAATTATCTTGTTT
chr3	164337703	164337704	chr3:164337704:C:T	rs76315165	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr3	164417378	164417379	chr3:164417379:C:T	rs13324218	C	T	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr3	164417393	164417394	chr3:164417394:T:G	rs13313898	T	G	G	Sox3.mouse_HMG_1	9	1	+	1.7106764249810662	-4.290261456684797	AAGCAGTAATAATGTTG
chr3	165406610	165406611	chr3:165406611:T:C	rs1581557	T	C	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr3	165534257	165534258	chr3:165534258:C:T	rs7645738	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr3	165638330	165638331	chr3:165638331:C:T	rs551276	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr3	165753763	165753764	chr3:165753764:T:A	chr3:165753764:T:A	T	A	T	Sox3.mouse_HMG_1	15	1	+	3.1117607611758054	-0.3850828606166653	AAACAATTGCTGAGTTT
chr3	165771051	165771052	chr3:165771052:A:G	rs142544999	A	G	A	Sox3.mouse_HMG_1	5	1	-	6.105906182248965	6.201216362053291	AAACATTAACAGTGTGT
chr3	165771076	165771077	chr3:165771077:T:C	rs2686401	T	C	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr3	166795386	166795387	chr3:166795387:G:A	rs13076931	G	A	A	Sox3.mouse_HMG_1	13	1	+	1.9065503535733779	-4.201555436452538	AAAAATTGCTATTGTAT
chr3	167300362	167300363	chr3:167300363:A:C	rs79541459	A	C	A	Sox3.mouse_HMG_1	0	1	+	2.3851204850537107	0.7955289727015125	AAACAATAACCATGTAA
chr3	167408225	167408226	chr3:167408226:G:C	rs11918151	G	C	G	Sox3.mouse_HMG_1	9	1	-	4.913990310551711	-1.1226536959987203	AAACAATAGCAGTATGG
chr3	168118272	168118273	chr3:168118273:G:C	rs190182577	G	C	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr3	168211888	168211889	chr3:168211889:C:T	rs16851992	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr3	168263095	168263096	chr3:168263096:C:T	rs79710577	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr3	168794154	168794155	chr3:168794155:C:A	rs1522983	C	A	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr3	168802941	168802942	chr3:168802942:A:G	rs2421449	A	G	A	Sox3.mouse_HMG_1	10	1	+	3.9919481597802706	-2.9162969991910686	AAAGAACAATAGTGTTT
chr3	168804003	168804004	chr3:168804004:T:G	rs526766	T	G	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr3	168876788	168876789	chr3:168876789:T:C	rs186347910	T	C	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr3	168975300	168975301	chr3:168975301:C:A	rs9835962	C	A	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr3	169383975	169383976	chr3:169383976:C:A	rs78530449	C	A	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr3	169664538	169664539	chr3:169664539:A:G	rs57455012	A	G	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr3	169836295	169836296	chr3:169836296:G:A	rs4352416	G	A	A	Sox3.mouse_HMG_1	8	1	+	2.8179345803502507	3.8443480553608875	AAAAAATGGCAGTCTTA
chr3	169836340	169836341	chr3:169836341:G:A	rs2421830	G	A	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr3	170197164	170197165	chr3:170197165:T:G	rs1798239	T	G	G	Sox3.mouse_HMG_1	11	1	+	5.880708909519543	3.752730242658662	GCACAATGGTATTGATG
chr3	170492710	170492711	chr3:170492711:T:C	rs9875318	T	C	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr3	170999636	170999637	chr3:170999637:A:G	rs11923694	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.448754104227894	-3.197336665401026	GAACAGTTGTACTGTTT
chr3	171191651	171191652	chr3:171191652:T:C	rs67023727	T	C	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr3	171286842	171286843	chr3:171286843:G:T	rs34125407	G	T	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr3	171317200	171317201	chr3:171317201:G:A	rs73030943	G	A	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr3	171349576	171349577	chr3:171349577:A:G	rs2222819	A	G	A	Sox3.mouse_HMG_1	11	1	-	7.744252442761159	1.6867963338008072	AAACAATCTAATTGTGT
chr3	171695658	171695659	chr3:171695659:C:G	rs73879808	C	G	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr3	171888727	171888728	chr3:171888728:T:A	rs11918222	T	A	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr3	172404449	172404450	chr3:172404450:G:C	rs586411	G	C	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr3	172404454	172404455	chr3:172404455:T:G	rs586414	T	G	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr3	172585845	172585846	chr3:172585846:C:A	rs16845864	C	A	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr3	172673272	172673273	chr3:172673273:C:T	rs9871626	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr3	173255923	173255924	chr3:173255924:A:G	rs792127	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr3	173402312	173402313	chr3:173402313:C:T	rs536445	C	T	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr3	173467585	173467586	chr3:173467586:A:G	rs6771377	A	G	A	Sox3.mouse_HMG_1	15	1	-	2.4671457787130877	-1.8353560190823954	AAACAATGATAAAGATG
chr3	173612711	173612712	chr3:173612712:C:G	rs6804605	C	G	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr3	173617393	173617394	chr3:173617394:A:G	rs6785544	A	G	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr3	173617398	173617399	chr3:173617399:A:G	rs73174591	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr3	173617415	173617416	chr3:173617416:A:G	rs6785556	A	G	A	Sox3.mouse_HMG_1	5	1	+	4.82285534320389	-1.9032781340985618	AAACAATGCAATTTGTT
chr3	173661812	173661813	chr3:173661813:A:G	rs1502483	A	G	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr3	173978091	173978092	chr3:173978092:A:G	rs76644405	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr3	174090520	174090521	chr3:174090521:C:G	rs74321051	C	G	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr3	174156594	174156595	chr3:174156595:G:A	rs1421428	G	A	G	Sox3.mouse_HMG_1	3	1	-	5.078102864092889	-0.904673254041432	AAACAATACCTTTGATA
chr3	174216858	174216859	chr3:174216859:G:A	rs6764226	G	A	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr3	174365446	174365447	chr3:174365447:A:G	rs1357800688	A	G	A	Sox3.mouse_HMG_1	2	1	+	1.5357358520690219	-2.8721991269114397	GAACAAGATTGGTGTTT
chr3	174701093	174701094	chr3:174701094:G:C	rs9866752	G	C	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr3	175288066	175288067	chr3:175288067:C:T	rs7650940	C	T	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr3	175491617	175491618	chr3:175491618:A:C	rs7619984	A	C	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr3	175685789	175685790	chr3:175685790:G:A	rs150823927	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr3	176562819	176562820	chr3:176562820:T:G	rs13323302	T	G	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr3	176790591	176790592	chr3:176790592:C:T	rs9834937	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr3	177106287	177106288	chr3:177106288:A:C	rs62296570	A	C	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr3	177151256	177151257	chr3:177151257:T:C	rs6791268	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr3	177199604	177199605	chr3:177199605:T:G	rs73171149	T	G	T	Sox3.mouse_HMG_1	1	1	-	2.6785404042957643	-2.959314491965347	TAAGAATGGTATGGTTG
chr3	177345483	177345484	chr3:177345484:G:A	rs6773879	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr3	177596132	177596133	chr3:177596133:G:A	rs55750640	G	A	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr3	177773453	177773454	chr3:177773454:T:C	rs9829938	T	C	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr3	177932476	177932477	chr3:177932477:G:A	rs73047670	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr3	177979012	177979013	chr3:177979013:A:G	rs737554	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr3	178267606	178267607	chr3:178267607:T:C	rs4857763	T	C	C	Sox3.mouse_HMG_1	9	1	-	2.9158776258482098	-1.6671219938731217	AACCAATATAAGTGTGA
chr3	178289887	178289888	chr3:178289888:A:G	rs17578740	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr3	178340820	178340821	chr3:178340821:C:T	rs1333855688	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr3	179319083	179319084	chr3:179319084:G:C	rs187628439	G	C	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr3	179319084	179319085	chr3:179319085:A:C	rs9968075	A	C	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr3	179319095	179319096	chr3:179319096:A:G	rs9968076	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.7401902797917588	-2.9859431975106974	TAACCATGACAGAGTTT
chr3	179730594	179730595	chr3:179730595:C:T	rs3213761	C	T	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr3	182358858	182358859	chr3:182358859:A:G	rs16833062	A	G	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr3	182437273	182437274	chr3:182437274:A:G	rs17826722	A	G	A	Sox3.mouse_HMG_1	6	1	-	5.627724681143759	-1.0183660884851597	CAACAATACTATTGGAA
chr3	182597629	182597630	chr3:182597630:T:G	rs62292972	T	G	T	Sox3.mouse_HMG_1	10	1	-	2.827632845967468	-3.7370226086137937	AAGCATTTGCATTGTAT
chr3	182730109	182730110	chr3:182730110:A:G	rs77677259	A	G	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr3	182761193	182761194	chr3:182761194:C:T	chr3:182761194:C:T	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr3	182768816	182768817	chr3:182768817:G:A	rs2700858	G	A	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr3	183301214	183301215	chr3:183301215:C:T	rs73066044	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr3	183516219	183516220	chr3:183516220:G:A	rs78325341	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr3	184236183	184236184	chr3:184236184:G:A	rs1709657	G	A	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr3	184506740	184506741	chr3:184506741:A:G	rs73179208	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr3	184506776	184506777	chr3:184506777:T:G	rs7612178	T	G	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr3	184620425	184620426	chr3:184620426:T:A	rs4621307	T	A	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr3	185151075	185151076	chr3:185151076:A:G	rs6444033	A	G	G	Sox3.mouse_HMG_1	7	1	-	2.499834053302403	-1.5833089768802138	GAACAATTGAATCCTTT
chr3	186259520	186259521	chr3:186259521:C:T	rs2268835	C	T	T	Sox3.mouse_HMG_1	3	1	+	4.476909394095531	-1.505866724038791	AAACAATAGCTTTGGTG
chr3	186380948	186380949	chr3:186380949:T:C	rs73885870	T	C	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr3	186576236	186576237	chr3:186576237:C:G	rs57150022	C	G	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr3	186922877	186922878	chr3:186922878:G:A	rs76909280	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr3	186922898	186922899	chr3:186922899:T:A	rs71322421	T	A	T	Sox3.mouse_HMG_1	12	1	+	1.2427905683649403	-4.345401505268172	AATCAATGAGACTGTTG
chr3	187041141	187041142	chr3:187041142:G:C	rs9847687	G	C	C	Sox3.mouse_HMG_1	9	1	-	1.7089185392451514	-4.32772546730528	AAACAAGAGCATGGTAT
chr3	187062722	187062723	chr3:187062723:T:A	rs59092417	T	A	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr3	187214138	187214139	chr3:187214139:A:G	rs2006377	A	G	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr3	187475459	187475460	chr3:187475460:C:T	rs78012014	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr3	187735581	187735582	chr3:187735582:A:G	rs375021514	A	G	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr3	187878955	187878956	chr3:187878956:G:T	rs6788294	G	T	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr3	187887526	187887527	chr3:187887527:C:T	rs6444265	C	T	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr3	187906121	187906122	chr3:187906122:A:G	rs9832302	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.4835983020272385	-2.1624924676016835	AATCCATGACAGTGTTG
chr3	187968052	187968053	chr3:187968053:T:C	rs6797424	T	C	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr3	188111372	188111373	chr3:188111373:A:C	rs13080242	A	C	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr3	188176483	188176484	chr3:188176484:A:G	rs344957	A	G	A	Sox3.mouse_HMG_1	14	1	-	3.2340194720030593	-2.875871443245648	TAAACATAATATTGTTG
chr3	188236625	188236626	chr3:188236626:A:C	rs4459895	A	C	C	Sox3.mouse_HMG_1	6	1	-	1.8683638994333598	-5.040091134663051	AACCAATAATTTTGTGT
chr3	188333436	188333437	chr3:188333437:T:C	rs76446876	T	C	T	Sox3.mouse_HMG_1	8	1	+	1.327037436566235	1.0142982116556927	GAACAGTATCAGTTTTG
chr3	188341654	188341655	chr3:188341655:A:G	rs13076750	A	G	G	Sox3.mouse_HMG_1	15	1	-	6.020718387858215	1.718216590062732	CTGCAATGCTAGTGTTT
chr3	188494741	188494742	chr3:188494742:G:T	rs12488120	G	T	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr3	188719878	188719879	chr3:188719879:T:C	rs145155147	T	C	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr3	188747121	188747122	chr3:188747122:C:T	rs9858643	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr3	189238090	189238091	chr3:189238091:A:G	rs77131167	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr3	189238110	189238111	chr3:189238111:T:C	rs7627269	T	C	T	Sox3.mouse_HMG_1	7	1	-	2.0845509880535418	2.580621307830853	AAACTAGATAAGTGTTT
chr3	189512414	189512415	chr3:189512415:A:G	rs1364593	A	G	G	Sox3.mouse_HMG_1	2	1	+	5.356463030588303	0.9485280516078445	GAACAATGCAATTGGAG
chr3	189573282	189573283	chr3:189573283:T:C	rs118065855	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr3	189821530	189821531	chr3:189821531:T:C	rs9879356	T	C	T	Sox3.mouse_HMG_1	12	1	+	2.6297706220213697	-3.576694963196482	AAAGAATTAGAGTGTTG
chr3	189842059	189842060	chr3:189842060:C:G	rs73199755	C	G	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr3	189842060	189842061	chr3:189842061:G:A	rs373564022	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr3	189867100	189867101	chr3:189867101:G:A	rs6807129	G	A	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr3	190133284	190133285	chr3:190133285:A:G	rs1002993	A	G	A	Sox3.mouse_HMG_1	4	1	+	2.9046687542449323	-3.907656337732303	ATACAATGTTATAGTGA
chr3	190306398	190306399	chr3:190306399:G:A	rs2204226	G	A	A	Sox3.mouse_HMG_1	3	1	-	4.084520140501935	-1.898255977632387	AAACAAAAAAAATGTTA
chr3	190386233	190386234	chr3:190386234:G:A	rs17444838	G	A	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr3	190490026	190490027	chr3:190490027:C:A	rs7628433	C	A	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr3	190808165	190808166	chr3:190808166:T:C	rs9857215	T	C	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr3	191198115	191198116	chr3:191198116:C:T	rs6444518	C	T	T	Sox3.mouse_HMG_1	1	1	-	4.999218790837372	9.326652134240065	GGACAATTACATGGTTA
chr3	191236709	191236710	chr3:191236710:G:A	rs111862329	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr3	191299757	191299758	chr3:191299758:T:C	rs12488853	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.982859103125183	-4.743274374177276	CTACAATTCTGGTGTTT
chr3	191376129	191376130	chr3:191376130:G:C	rs17754685	G	C	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr3	191398780	191398781	chr3:191398781:A:G	rs9840425	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr3	191419662	191419663	chr3:191419663:A:G	rs67794767	A	G	G	Sox3.mouse_HMG_1	10	1	+	1.060191446524652	-5.848053712446686	AAGCAACAGCATGGTTT
chr3	192011417	192011418	chr3:192011418:G:C	rs2669964	G	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr3	192336528	192336529	chr3:192336529:G:A	rs13081106	G	A	G	Sox3.mouse_HMG_1	13	1	+	3.152620662688469	-2.9554851273374467	AAGCAATCATATAGTTA
chr3	192772703	192772704	chr3:192772704:C:G	rs77244942	C	G	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr3	192927276	192927277	chr3:192927277:C:G	rs2593895	C	G	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr3	193701835	193701836	chr3:193701836:C:T	rs73069792	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr3	193822753	193822754	chr3:193822754:G:A	rs180765202	G	A	G	Sox3.mouse_HMG_1	2	1	+	4.605522714896394	9.013457693876854	AAGCAATGGCAATGTCT
chr3	193932301	193932302	chr3:193932302:C:T	rs12485924	C	T	C	Sox3.mouse_HMG_1	3	1	+	1.6395487022644828	-4.343227415869839	GATCAATGACATAGTCA
chr3	194061579	194061580	chr3:194061580:G:A	rs28636913	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr3	194246507	194246508	chr3:194246508:C:G	rs891571966	C	G	C	Sox3.mouse_HMG_1	0	1	-	7.091159629066125	6.874384782175467	GAACAATGCTATTGCAG
chr3	194249479	194249480	chr3:194249480:G:C	rs6444785	G	C	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr3	194256989	194256990	chr3:194256990:T:C	rs11716465	T	C	C	Sox3.mouse_HMG_1	16	1	-	4.407024078390714	4.840855523111822	AAAGAATACCAATGTTA
chr3	194322224	194322225	chr3:194322225:G:A	rs144519652	G	A	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr3	194485487	194485488	chr3:194485488:A:G	rs139445312	A	G	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr3	194767189	194767190	chr3:194767190:T:A	rs9857633	T	A	T	Sox3.mouse_HMG_1	4	1	-	6.130580946896886	-0.18372747960693914	CAGCAAGGCTATTGTTT
chr3	194797799	194797800	chr3:194797800:A:G	rs111270445	A	G	A	Sox3.mouse_HMG_1	5	1	+	4.93997033467474	-1.786163142627716	GAGCAATATCATTGTGC
chr3	194887325	194887326	chr3:194887326:G:A	rs11720362	G	A	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr3	195004768	195004769	chr3:195004769:A:G	rs2048905	A	G	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr3	195028083	195028084	chr3:195028084:G:A	rs73204350	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr3	195124496	195124497	chr3:195124497:G:T	rs1874104	G	T	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr3	195377519	195377520	chr3:195377520:T:C	rs1326757567	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr3	195700805	195700806	chr3:195700806:A:G	rs892318199	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr3	195706969	195706970	chr3:195706970:A:C	rs6792153	A	C	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr3	196046189	196046190	chr3:196046190:T:A	rs9637533	T	A	T	Sox3.mouse_HMG_1	10	1	-	4.020954894577897	-2.791980084589117	CAATAATTACATTATTG
chr3	196525135	196525136	chr3:196525136:G:A	rs7648243	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr3	196624038	196624039	chr3:196624039:G:A	rs1825471	G	A	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr3	196658626	196658627	chr3:196658627:A:G	rs1099215	A	G	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr3	196706751	196706752	chr3:196706752:T:C	rs7616240	T	C	T	Sox3.mouse_HMG_1	4	1	-	3.6638463571746818	-3.1484787348025525	AAACAATTTTTTTTTTG
chr3	196754664	196754665	chr3:196754665:C:T	rs117068427	C	T	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr3	196960016	196960017	chr3:196960017:C:T	rs73208209	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr3	197005049	197005050	chr3:197005050:C:T	rs6793175	C	T	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr3	197409927	197409928	chr3:197409928:A:G	rs2003079	A	G	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr3	197422053	197422054	chr3:197422054:C:T	rs142048623	C	T	c	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr3	197465146	197465147	chr3:197465147:G:A	rs1431501	G	A	G	Sox3.mouse_HMG_1	13	1	+	3.9428546829783215	-2.1652511070475944	TAACAATAAAAATGGTT
chr3	197883737	197883738	chr3:197883738:G:A	rs114390216	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr3	197942956	197942957	chr3:197942957:A:G	rs74696920	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr3	197950477	197950478	chr3:197950478:G:C	rs7644053	G	C	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr4	121739	121740	chr4:121740:G:A	rs10025424	G	A	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr4	121771	121772	chr4:121772:C:T	rs9996597	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr4	1137982	1137983	chr4:1137983:A:G	rs80099866	A	G	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr4	1524352	1524353	chr4:1524353:T:G	rs371390997	T	G	-	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr4	1524382	1524383	chr4:1524383:C:T	rs7671085	C	T	-	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr4	1524554	1524555	chr4:1524555:G:A	rs377403006	G	A	g	Sox3.mouse_HMG_1	3	1	-	10.692960940897441	4.71018482276312	AAACAATGCCAGTGATG
chr4	1971072	1971073	chr4:1971073:G:C	rs73202835	G	C	G	Sox3.mouse_HMG_1	16	1	+	3.974976067440099	1.3390310425762295	TAAAAATAAAATTGTGG
chr4	2372012	2372013	chr4:2372013:G:T	rs762844	G	T	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr4	2739544	2739545	chr4:2739545:A:C	rs4039740	A	C	A	Sox3.mouse_HMG_1	3	1	+	2.722166067357047	9.446879530220746	AAGATATGATATTGTTT
chr4	2777808	2777809	chr4:2777809:C:T	rs116355813	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr4	3057437	3057438	chr4:3057438:A:C	rs28856696	A	C	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr4	3689463	3689464	chr4:3689464:C:T	rs10805007	C	T	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr4	3832140	3832141	chr4:3832141:G:A	rs28552809	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr4	3861201	3861202	chr4:3861202:A:G	rs28431162	A	G	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr4	4296842	4296843	chr4:4296843:A:G	rs2980167	A	G	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr4	4325552	4325553	chr4:4325553:C:T	rs1020266	C	T	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr4	4429243	4429244	chr4:4429244:G:A	rs13150601	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr4	4438711	4438712	chr4:4438712:T:C	rs28433883	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr4	4481446	4481447	chr4:4481447:G:T	rs10031273	G	T	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr4	4553769	4553770	chr4:4553770:T:C	rs7689784	T	C	T	Sox3.mouse_HMG_1	11	1	+	2.451139747182452	-3.6063163617779006	GAACATGTGCATTGTTT
chr4	4555294	4555295	chr4:4555295:A:C	rs1822143	A	C	A	Sox3.mouse_HMG_1	1	1	+	2.2308191556207997	-3.4070357406403105	AAACCATGTCAATGTGT
chr4	4911214	4911215	chr4:4911215:A:G	rs4593079	A	G	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr4	4914132	4914133	chr4:4914133:T:C	rs189813916	T	C	-	Sox3.mouse_HMG_1	5	1	-	1.860703402759028	-4.865430074543428	AAACAACGGCATTTTCT
chr4	4914375	4914376	chr4:4914376:A:G	rs77564418	A	G	A	Sox3.mouse_HMG_1	3	1	+	9.48720165615612	9.304880099362167	AAAAAATAACATTGTAT
chr4	4972316	4972317	chr4:4972317:C:G	rs62290430	C	G	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr4	5365251	5365252	chr4:5365252:C:A	rs6824273	C	A	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr4	5562463	5562464	chr4:5562464:A:T	rs2287576	A	T	a	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr4	5638936	5638937	chr4:5638937:A:T	rs4688943	A	T	T	Sox3.mouse_HMG_1	11	1	-	4.2134904939481	-1.6489655999585269	AAACAACAGAATTTTTT
chr4	5748056	5748057	chr4:5748057:G:A	rs4689312	G	A	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr4	5780563	5780564	chr4:5780564:A:T	rs7666126	A	T	A	Sox3.mouse_HMG_1	2	1	+	4.953822541556006	-0.9482641944007585	TAACAATTATATTTATT
chr4	6120407	6120408	chr4:6120408:C:T	rs7664611	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr4	6175759	6175760	chr4:6175760:A:G	rs75557688	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr4	6716307	6716308	chr4:6716308:T:C	rs966229686	T	C	T	Sox3.mouse_HMG_1	15	1	+	0.6945759904519256	-3.607925807343558	GGACAGTGGCACTGTTT
chr4	6736495	6736496	chr4:6736496:C:T	rs111400911	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr4	7004670	7004671	chr4:7004671:A:G	rs2301818	A	G	A	Sox3.mouse_HMG_1	11	1	-	7.421041495379562	1.3635853864192105	AAGTAATTTTATTGTTT
chr4	7133399	7133400	chr4:7133400:G:A	rs41384948	G	A	A	Sox3.mouse_HMG_1	5	1	+	2.1749388832958103	8.901072360598265	TAACAGTGCAAGTGTGT
chr4	7133425	7133426	chr4:7133426:C:A	rs57999582	C	A	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr4	7151914	7151915	chr4:7151915:C:T	rs11724494	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr4	7174176	7174177	chr4:7174177:G:C	rs149735218	G	C	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr4	7275241	7275242	chr4:7275242:A:G	rs11726538	A	G	G	Sox3.mouse_HMG_1	9	1	+	2.6789694509093236	-1.9040301688120091	AACAAATAGAATTGTTA
chr4	7302838	7302839	chr4:7302839:G:A	rs4689687	G	A	G	Sox3.mouse_HMG_1	0	1	+	1.726739243082866	3.0995559085444047	GCACAAGGGTATTGTAT
chr4	7395607	7395608	chr4:7395608:A:T	rs10033441	A	T	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr4	7807744	7807745	chr4:7807745:A:G	rs4689869	A	G	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr4	7953760	7953761	chr4:7953761:C:T	rs11732351	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr4	8221759	8221760	chr4:8221760:T:A	rs115664377	T	A	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr4	8393791	8393792	chr4:8393792:T:C	rs556070047	T	C	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr4	8393795	8393796	chr4:8393796:C:G	rs912520267	C	G	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr4	9151731	9151732	chr4:9151732:T:A	rs35796658	T	A	N	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr4	9947204	9947205	chr4:9947205:C:T	rs998675	C	T	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr4	10006279	10006280	chr4:10006280:C:T	rs3796841	C	T	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr4	10006299	10006300	chr4:10006300:C:T	rs79695094	C	T	C	Sox3.mouse_HMG_1	0	1	-	4.354242934630442	5.727059600091981	GCACATTAATATTGTTA
chr4	10008183	10008184	chr4:10008184:T:G	rs78441715	T	G	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr4	10129220	10129221	chr4:10129221:A:C	rs6853696	A	C	a	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr4	10157906	10157907	chr4:10157907:A:G	rs540504166	A	G	a	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr4	10157929	10157930	chr4:10157930:G:A	rs2241467	G	A	g	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr4	10262149	10262150	chr4:10262150:C:G	rs4697990	C	G	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr4	10273309	10273310	chr4:10273310:G:C	rs4697999	G	C	c	Sox3.mouse_HMG_1	13	1	+	2.8868408546689803	-3.2212649353569356	AAGCAATGATGTTGTGA
chr4	10285040	10285041	chr4:10285041:G:A	rs7685241	G	A	A	Sox3.mouse_HMG_1	3	1	-	2.8529547959387305	-3.129821322195591	AGGCAATACCATAGTTA
chr4	10285062	10285063	chr4:10285063:C:T	rs12640013	C	T	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr4	10656776	10656777	chr4:10656777:G:A	rs73810359	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr4	10743792	10743793	chr4:10743793:A:G	rs12644098	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr4	10965269	10965270	chr4:10965270:A:C	rs2869770	A	C	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr4	11549117	11549118	chr4:11549118:A:C	rs9654125	A	C	A	Sox3.mouse_HMG_1	11	1	-	4.494005218207376	2.3660265513464958	AAATAATTTTATTTTTG
chr4	11564441	11564442	chr4:11564442:G:A	rs13114692	G	A	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr4	11699568	11699569	chr4:11699569:G:A	rs7696515	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr4	11743626	11743627	chr4:11743627:A:G	rs1873714	A	G	A	Sox3.mouse_HMG_1	11	1	-	12.15419654363152	6.096740434671167	CACCAATGATATTGTTT
chr4	11821877	11821878	chr4:11821878:G:A	rs12509663	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr4	11882262	11882263	chr4:11882263:A:G	rs17256968	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr4	12179123	12179124	chr4:12179124:T:G	rs724316	T	G	G	Sox3.mouse_HMG_1	11	1	+	3.59952546557038	1.4715467987095008	AGGCAATATCATAGTTG
chr4	12894479	12894480	chr4:12894480:C:T	rs1513953	C	T	C	Sox3.mouse_HMG_1	10	1	-	1.8793289400169857	8.787574098988324	AAACCATTGCGGTGTTT
chr4	13032987	13032988	chr4:13032988:T:C	rs66894225	T	C	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr4	13368306	13368307	chr4:13368307:C:T	rs144257380	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr4	13590833	13590834	chr4:13590834:A:G	rs10939492	A	G	A	Sox3.mouse_HMG_1	11	1	-	3.8174069674967877	-2.2400491414635644	AAACAGTAGAATTGATA
chr4	13882063	13882064	chr4:13882064:C:T	rs75843035	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr4	13988546	13988547	chr4:13988547:T:C	rs186086090	T	C	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr4	14027232	14027233	chr4:14027233:G:A	rs541971	G	A	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr4	14410873	14410874	chr4:14410874:A:G	rs17481850	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr4	14477196	14477197	chr4:14477197:G:C	rs1160357	G	C	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr4	14837616	14837617	chr4:14837617:A:G	rs73239325	A	G	a	Sox3.mouse_HMG_1	15	1	-	3.8612738210313986	-0.4412279767640846	GAACAAAAATCTTGTTG
chr4	14837620	14837621	chr4:14837621:A:C	rs13134953	A	C	a	Sox3.mouse_HMG_1	11	1	-	3.8612738210313986	1.733295154170519	GAACAAAAATCTTGTTG
chr4	14877571	14877572	chr4:14877572:C:T	rs6848585	C	T	C	Sox3.mouse_HMG_1	16	1	-	2.38319369876143	1.949362254040323	AAGCAATTACAGTGAAG
chr4	14877585	14877586	chr4:14877586:C:T	rs41328848	C	T	C	Sox3.mouse_HMG_1	2	1	-	2.38319369876143	6.79112867774189	AAGCAATTACAGTGAAG
chr4	14883750	14883751	chr4:14883751:A:C	rs17440311	A	C	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr4	15132522	15132523	chr4:15132523:C:A	rs66637342	C	A	C	Sox3.mouse_HMG_1	3	1	+	4.193268783268316	-2.5314446795953796	AAACAATGATATTTCAT
chr4	15327421	15327422	chr4:15327422:C:A	rs4440214	C	A	A	Sox3.mouse_HMG_1	13	1	-	3.219156314552584	-3.149963300842951	CCACAATGGTAGGGTTT
chr4	15352264	15352265	chr4:15352265:A:G	rs13139715	A	G	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr4	15797583	15797584	chr4:15797584:C:T	rs6843266	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr4	15933387	15933388	chr4:15933388:A:G	rs2531176	A	G	A	Sox3.mouse_HMG_1	4	1	+	9.458877610077336	2.6465525181000995	GACCAATGTCAGTGTTT
chr4	16196815	16196816	chr4:16196816:T:C	rs10939653	T	C	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr4	16416815	16416816	chr4:16416816:A:G	rs2872340	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr4	16416837	16416838	chr4:16416838:T:C	rs2036358	T	C	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr4	16532529	16532530	chr4:16532530:C:T	rs10516301	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr4	16628309	16628310	chr4:16628310:C:T	rs78010452	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr4	16860866	16860867	chr4:16860867:A:G	rs16894096	A	G	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr4	16952512	16952513	chr4:16952513:C:A	rs115400508	C	A	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr4	16967604	16967605	chr4:16967605:C:T	rs34967214	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr4	17065962	17065963	chr4:17065963:T:G	rs62298712	T	G	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr4	17142035	17142036	chr4:17142036:T:G	rs1357230	T	G	.	Sox3.mouse_HMG_1	4	1	-	5.4805698010237345	-1.2447439139638719	ACACAATAATAGTGGTT
chr4	18248185	18248186	chr4:18248186:A:G	rs1354378	A	G	G	Sox3.mouse_HMG_1	10	1	+	7.592613392307706	0.6843682333363675	AAGCAACAGTATTGTTT
chr4	19373942	19373943	chr4:19373943:C:T	rs34517311	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr4	19738811	19738812	chr4:19738812:T:C	rs62295094	T	C	T	Sox3.mouse_HMG_1	14	1	+	3.2312231041389086	-2.8786678111097985	AAACAAATAAATTATTG
chr4	20038078	20038079	chr4:20038079:C:T	rs4470624	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr4	20194201	20194202	chr4:20194202:T:C	rs1158700027	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr4	20194206	20194207	chr4:20194207:C:T	rs677198	C	T	T	Sox3.mouse_HMG_1	13	1	-	5.254383569088963	-0.8537222209369522	AAGCAATATCAGTGTAC
chr4	20258404	20258405	chr4:20258405:T:G	rs2322459	T	G	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr4	20258414	20258415	chr4:20258415:G:A	rs2874800	G	A	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr4	20324036	20324037	chr4:20324037:A:C	rs35915704	A	C	A	Sox3.mouse_HMG_1	4	1	+	7.706012791177603	0.9806990761899976	AAACAATAAGATTGTGA
chr4	20529357	20529358	chr4:20529358:G:A	rs2168801	G	A	G	Sox3.mouse_HMG_1	8	1	+	5.464958171287526	6.491371646298161	TAACAATGGTATTTATT
chr4	20754383	20754384	chr4:20754384:G:A	rs2291530	G	A	G	Sox3.mouse_HMG_1	3	1	-	5.358479608596092	-0.6242965095382298	GAACAGTAACATTGATG
chr4	21135177	21135178	chr4:21135178:A:G	rs138499778	A	G	A	Sox3.mouse_HMG_1	11	1	-	2.4752985807133467	-3.5821575282470066	CAGCAATGATATACTTT
chr4	21135182	21135183	chr4:21135183:A:G	rs551608127	A	G	A	Sox3.mouse_HMG_1	6	1	-	2.4752985807133467	-4.170792188915574	CAGCAATGATATACTTT
chr4	21544593	21544594	chr4:21544594:C:T	rs870368	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr4	21845358	21845359	chr4:21845359:A:G	rs12650691	A	G	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr4	21922835	21922836	chr4:21922836:A:G	rs13127167	A	G	G	Sox3.mouse_HMG_1	7	1	-	2.4963269898536056	-1.5868160403290128	AAACAAATGCAGTCTTT
chr4	21986590	21986591	chr4:21986591:G:T	rs997045426	G	T	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr4	22291769	22291770	chr4:22291770:C:T	rs1159483	C	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr4	22454382	22454383	chr4:22454383:C:G	rs1462994	C	G	C	Sox3.mouse_HMG_1	1	1	+	3.2079474500099936	4.518369002868413	GCACAATTCAAATGTTT
chr4	22456851	22456852	chr4:22456852:A:C	rs61792030	A	C	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr4	22609474	22609475	chr4:22609475:T:C	rs6838110	T	C	c	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr4	22815039	22815040	chr4:22815040:A:G	rs1485822	A	G	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr4	23290799	23290800	chr4:23290800:T:C	rs4519787	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr4	23805437	23805438	chr4:23805438:T:G	rs28750249	T	G	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr4	23877653	23877654	chr4:23877654:C:T	rs115179278	C	T	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr4	23925205	23925206	chr4:23925206:C:A	rs79067637	C	A	C	Sox3.mouse_HMG_1	0	1	-	3.2247568560127045	2.5744191961580003	GACCAAAGTAATTGTTT
chr4	24402432	24402433	chr4:24402433:G:A	rs59129277	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr4	24597454	24597455	chr4:24597455:G:A	rs1857898	G	A	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr4	24604631	24604632	chr4:24604632:A:G	rs13120554	A	G	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr4	24724774	24724775	chr4:24724775:A:C	rs11947625	A	C	A	Sox3.mouse_HMG_1	13	1	-	2.7473445100041256	9.116464125399661	GCACAATAAAAGTTTTT
chr4	24724782	24724783	chr4:24724783:T:C	rs11943314	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.7473445100041256	-3.978788967298331	GCACAATAAAAGTTTTT
chr4	24725959	24725960	chr4:24725960:T:C	rs4697478	T	C	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr4	25097376	25097377	chr4:25097377:A:C	rs62409748	A	C	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr4	25171663	25171664	chr4:25171664:C:T	rs13123844	C	T	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr4	25313515	25313516	chr4:25313516:G:A	chr4:25313516:G:A	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr4	25439890	25439891	chr4:25439891:T:C	rs6835627	T	C	T	Sox3.mouse_HMG_1	8	1	-	8.40479914909831	7.3783856740876725	AAATAATAATATTGATT
chr4	25439899	25439900	chr4:25439900:A:G	rs6858330	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr4	25440571	25440572	chr4:25440572:T:C	rs189874785	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.3291820336204578	-5.396951443681998	CAACAATGGAAGGGCTT
chr4	25907296	25907297	chr4:25907297:A:G	rs6818008	A	G	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr4	26003614	26003615	chr4:26003615:A:G	rs17684918	A	G	a	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr4	26035979	26035980	chr4:26035980:C:T	rs4692317	C	T	T	Sox3.mouse_HMG_1	9	1	+	3.4521068166151654	3.4164006917305976	AAAGATTTACATTGTTA
chr4	26206633	26206634	chr4:26206634:G:A	rs528700663	G	A	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr4	26369476	26369477	chr4:26369477:G:A	rs13129276	G	A	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr4	26510393	26510394	chr4:26510394:A:C	rs13115937	A	C	C	Sox3.mouse_HMG_1	4	1	+	3.218606449283649	-3.506707265703956	CAAAAATTCTATTGTGA
chr4	26821375	26821376	chr4:26821376:A:G	rs6856464	A	G	C	Sox3.mouse_HMG_1	12	1	-	5.660513266069654	-0.5459523191481981	AAACAATGTTAATGGTA
chr4	26887029	26887030	chr4:26887030:G:A	rs80197589	G	A	G	Sox3.mouse_HMG_1	10	1	-	4.877897545167903	4.629618020582151	TAACAATGAACTTGATT
chr4	27005657	27005658	chr4:27005658:C:A	rs933977928	C	A	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr4	27005706	27005707	chr4:27005707:T:G	chr4:27005707:T:G	T	G	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr4	27068638	27068639	chr4:27068639:C:A	rs6814366	C	A	C	Sox3.mouse_HMG_1	16	1	-	2.939405878864178	3.9052575196212906	GAACAAGGAACTTGTTG
chr4	27094521	27094522	chr4:27094522:C:T	rs56043656	C	T	C	Sox3.mouse_HMG_1	8	1	-	3.8105782040868097	4.836991679097445	GACCAATGGTATGGTTG
chr4	27920633	27920634	chr4:27920634:T:G	rs16867844	T	G	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr4	27935192	27935193	chr4:27935193:A:G	rs1990546	A	G	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr4	29153719	29153720	chr4:29153720:C:G	rs73112426	C	G	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr4	29407415	29407416	chr4:29407416:A:T	rs260121	A	T	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr4	30463158	30463159	chr4:30463159:C:T	rs73216835	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr4	30716710	30716711	chr4:30716711:A:G	rs9291546	A	G	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr4	30788882	30788883	chr4:30788883:C:T	rs35154721	C	T	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr4	31226270	31226271	chr4:31226271:A:T	rs114093428	A	T	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr4	31311729	31311730	chr4:31311730:C:T	rs4566619	C	T	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr4	31963879	31963880	chr4:31963880:C:T	rs1916298	C	T	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr4	32199971	32199972	chr4:32199972:C:A	rs12512513	C	A	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr4	32243892	32243893	chr4:32243893:T:C	rs6831078	T	C	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr4	34633400	34633401	chr4:34633401:T:C	rs28704544	T	C	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr4	34633436	34633437	chr4:34633437:T:C	rs11947871	T	C	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr4	34719304	34719305	chr4:34719305:G:A	rs1511856	G	A	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr4	34721116	34721117	chr4:34721117:A:G	rs55634177	A	G	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr4	34846053	34846054	chr4:34846054:A:G	rs16990391	A	G	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr4	35168345	35168346	chr4:35168346:A:C	rs13133684	A	C	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr4	35168370	35168371	chr4:35168371:A:G	rs114362182	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr4	36026873	36026874	chr4:36026874:G:C	rs6856512	G	C	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr4	36128836	36128837	chr4:36128837:C:T	rs73806496	C	T	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr4	38131377	38131378	chr4:38131378:A:G	rs633059	A	G	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr4	38613847	38613848	chr4:38613848:C:T	rs79449299	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr4	38832524	38832525	chr4:38832525:C:G	rs114601407	C	G	G	Sox3.mouse_HMG_1	9	1	-	2.3688126130679183	8.40545661961835	GAACAATGTGATTGCAT
chr4	38856052	38856053	chr4:38856053:T:C	rs17616475	T	C	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr4	38925238	38925239	chr4:38925239:C:T	rs17429556	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr4	38985151	38985152	chr4:38985152:G:T	rs35119141	G	T	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr4	38996828	38996829	chr4:38996829:G:A	rs35834092	G	A	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr4	39178796	39178797	chr4:39178797:T:G	rs1451821	T	G	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr4	39481417	39481418	chr4:39481418:C:T	rs16995316	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr4	39700256	39700257	chr4:39700257:A:T	rs78260667	A	T	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr4	40004393	40004394	chr4:40004394:C:T	rs62310167	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr4	40179684	40179685	chr4:40179685:A:G	rs73229764	A	G	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr4	40299641	40299642	chr4:40299642:T:A	rs79198515	T	A	T	Sox3.mouse_HMG_1	0	1	-	3.7078840668006627	1.6847297414844182	AAATAATTATTGTGTTT
chr4	40659470	40659471	chr4:40659471:A:G	rs180940662	A	G	A	Sox3.mouse_HMG_1	12	1	-	3.484642206501409	-2.7218233787164428	CAACAATGTAAGTGGCT
chr4	40834975	40834976	chr4:40834976:T:A	rs7700067	T	A	t	Sox3.mouse_HMG_1	0	1	-	3.9281395825932623	1.9049852572770183	AAAAAATATCAGTCTTT
chr4	40940922	40940923	chr4:40940923:C:T	rs903932636	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr4	41154464	41154465	chr4:41154465:C:T	rs10031816	C	T	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr4	41280947	41280948	chr4:41280948:T:G	rs7680720	T	G	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr4	41612696	41612697	chr4:41612697:T:G	chr4:41612697:T:G	T	G	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr4	41612697	41612698	chr4:41612698:C:A	chr4:41612698:C:A	C	A	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr4	41852457	41852458	chr4:41852458:A:T	rs7662555	A	T	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr4	42153212	42153213	chr4:42153213:T:A	rs150511198	T	A	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr4	42247803	42247804	chr4:42247804:T:A	rs7673565	T	A	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr4	42360264	42360265	chr4:42360265:C:T	rs148487236	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr4	42417604	42417605	chr4:42417605:G:C	rs73235559	G	C	G	Sox3.mouse_HMG_1	11	1	+	9.566464051639377	5.636986609539904	AAAAAATGTCAGTGTTG
chr4	42436982	42436983	chr4:42436983:A:T	rs62304290	A	T	A	Sox3.mouse_HMG_1	12	1	-	6.284552470050646	0.696360396417535	AAACAATAAAAATCTTT
chr4	42646002	42646003	chr4:42646003:A:G	rs2575472	A	G	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr4	42646023	42646024	chr4:42646024:C:T	rs115229687	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr4	42904724	42904725	chr4:42904725:A:T	rs17534403	A	T	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr4	42923613	42923614	chr4:42923614:A:T	rs1450916	A	T	A	Sox3.mouse_HMG_1	14	1	-	4.4989824849020135	-0.786494863793078	AAGGAATTAAATTGTTA
chr4	43252112	43252113	chr4:43252113:A:G	rs1013813329	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr4	43277189	43277190	chr4:43277190:C:T	rs17451069	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr4	43709668	43709669	chr4:43709669:C:A	rs7439917	C	A	c	Sox3.mouse_HMG_1	3	1	+	4.028743105034398	-2.695970357829302	GAACAATTAAATTGCCA
chr4	44553524	44553525	chr4:44553525:G:A	rs1548043	G	A	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr4	45578962	45578963	chr4:45578963:A:G	rs1386205	A	G	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr4	46931996	46931997	chr4:46931997:T:G	rs12508654	T	G	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr4	47427388	47427389	chr4:47427389:A:C	rs76065978	A	C	A	Sox3.mouse_HMG_1	16	1	-	7.01062140059163	6.044769759834518	GAGCAATGACAGTGATT
chr4	47464198	47464199	chr4:47464199:T:C	rs80018067	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr4	47789401	47789402	chr4:47789402:C:T	rs60338190	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr4	47816010	47816011	chr4:47816011:T:G	rs17601719	T	G	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr4	47826396	47826397	chr4:47826397:G:A	rs62299256	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr4	48309352	48309353	chr4:48309353:C:T	rs379323	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr4	48329832	48329833	chr4:48329833:A:G	rs309867	A	G	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr4	48375844	48375845	chr4:48375845:A:G	rs75395618	A	G	a	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr4	48477100	48477101	chr4:48477101:A:C	rs6821909	A	C	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr4	49510956	49510957	chr4:49510957:A:G	rs6599465	A	G	.	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr4	49710485	49710486	chr4:49710486:T:C	chr4:49710486:T:C	T	C	.	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr4	49710516	49710517	chr4:49710517:T:A	rs1420536961	T	A	.	Sox3.mouse_HMG_1	4	1	-	1.465241811509735	-4.849066614994093	GTACATTGATATTGTGG
chr4	51964277	51964278	chr4:51964278:T:G	rs11735705	T	G	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr4	52127626	52127627	chr4:52127627:G:A	rs59191369	G	A	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr4	52367315	52367316	chr4:52367316:G:A	rs2077878	G	A	G	Sox3.mouse_HMG_1	13	1	+	2.63232633513178	-3.4757794548941354	AAATAATGACACTGTGG
chr4	52372173	52372174	chr4:52372174:A:G	rs10866445	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr4	52407928	52407929	chr4:52407929:C:G	chr4:52407929:C:G	C	G	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr4	52483416	52483417	chr4:52483417:T:C	rs10023109	T	C	C	Sox3.mouse_HMG_1	8	1	+	2.8069812108702084	2.494241985959666	TAACAATTTCAGTGGAG
chr4	52483424	52483425	chr4:52483425:G:C	rs145630090	G	C	G	Sox3.mouse_HMG_1	16	1	+	2.8069812108702084	0.17103618600633874	TAACAATTTCAGTGGAG
chr4	52566735	52566736	chr4:52566736:T:C	rs561457847	T	C	T	Sox3.mouse_HMG_1	6	1	+	5.729958034032067	-0.9161327355968532	AAGCAATTAAATTGCTG
chr4	52566743	52566744	chr4:52566744:C:A	rs10022931	C	A	C	Sox3.mouse_HMG_1	14	1	+	5.729958034032067	6.554371600585682	AAGCAATTAAATTGCTG
chr4	52788625	52788626	chr4:52788626:G:A	rs4242019	G	A	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr4	53011406	53011407	chr4:53011407:T:G	rs79121806	T	G	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr4	53129416	53129417	chr4:53129417:T:G	rs10031065	T	G	G	Sox3.mouse_HMG_1	14	1	+	5.183330167359502	-1.2433190844224953	GAATTATATTATTGTTT
chr4	53596500	53596501	chr4:53596501:C:T	rs925477	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr4	53635263	53635264	chr4:53635264:T:C	rs3942650	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr4	53895236	53895237	chr4:53895237:G:T	rs2102012	G	T	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr4	53928175	53928176	chr4:53928176:G:A	rs61277036	G	A	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr4	53988209	53988210	chr4:53988210:C:A	rs13134590	C	A	C	Sox3.mouse_HMG_1	3	1	+	3.1920603744950125	-3.5326530883686873	TGACAATGGCAGTATTA
chr4	54014884	54014885	chr4:54014885:T:C	rs958852619	T	C	T	Sox3.mouse_HMG_1	6	1	+	8.796693777755712	2.1506030081267915	CAAAAATGACAGTGTTG
chr4	54625736	54625737	chr4:54625737:T:G	rs759082	T	G	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr4	54838132	54838133	chr4:54838133:G:T	rs2646317	G	T	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr4	54864386	54864387	chr4:54864387:T:G	rs1021604	T	G	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr4	55185126	55185127	chr4:55185127:C:T	rs144555188	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr4	55364951	55364952	chr4:55364952:C:T	rs7663650	C	T	C	Sox3.mouse_HMG_1	10	1	+	6.914859891020733	6.666580366434981	AAACCATGACCTTGTTT
chr4	55768755	55768756	chr4:55768756:G:A	rs73238325	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr4	55768761	55768762	chr4:55768762:C:T	rs73238326	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr4	55930655	55930656	chr4:55930656:G:T	rs34285861	G	T	G	Sox3.mouse_HMG_1	9	1	-	2.652702168291868	1.199057781462769	CTAAAATGTCAGTGTTA
chr4	56251775	56251776	chr4:56251776:T:C	rs11938331	T	C	C	Sox3.mouse_HMG_1	15	1	-	3.869111630932313	2.7995363951187486	AAGCAAAAGCATTGTAT
chr4	56383108	56383109	chr4:56383109:T:A	rs13109030	T	A	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr4	57044118	57044119	chr4:57044119:A:G	rs11573106	A	G	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr4	57044152	57044153	chr4:57044153:G:C	rs11573105	G	C	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr4	57080855	57080856	chr4:57080856:C:T	rs11936912	C	T	T	Sox3.mouse_HMG_1	0	1	+	4.041860757220074	3.608297944256028	CACCAATGAAAGTGTGT
chr4	57285775	57285776	chr4:57285776:A:G	rs57826843	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr4	57329029	57329030	chr4:57329030:C:T	rs2535503	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr4	57550231	57550232	chr4:57550232:C:T	rs60422942	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr4	58091023	58091024	chr4:58091024:C:G	rs2660951	C	G	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr4	58091072	58091073	chr4:58091073:T:G	rs17089108	T	G	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr4	58209036	58209037	chr4:58209037:A:G	rs116770522	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr4	58807999	58808000	chr4:58808000:G:A	rs6853837	G	A	a	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr4	59156376	59156377	chr4:59156377:C:G	rs6551607	C	G	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr4	59174921	59174922	chr4:59174922:T:A	rs11732027	T	A	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr4	59712543	59712544	chr4:59712544:A:C	rs1507129	A	C	A	Sox3.mouse_HMG_1	13	1	-	2.818855537280988	9.187975152676524	CAGCAATAGCATTTTAT
chr4	60345098	60345099	chr4:60345099:G:C	rs10003919	G	C	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr4	60351220	60351221	chr4:60351221:C:A	rs7662227	C	A	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr4	60562818	60562819	chr4:60562819:G:A	rs1866498	G	A	G	Sox3.mouse_HMG_1	2	1	+	6.320489373770867	10.728424352751327	AAGCATTGCTATTGTTA
chr4	60562851	60562852	chr4:60562852:T:A	rs17090190	T	A	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr4	60649735	60649736	chr4:60649736:T:C	rs17090233	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr4	62706303	62706304	chr4:62706304:T:G	rs72630526	T	G	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr4	62881846	62881847	chr4:62881847:A:G	rs13105373	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.898119579476322	-1.1593365294840292	AAACAATAAAATATTTA
chr4	62899778	62899779	chr4:62899779:A:G	rs11131416	A	G	A	Sox3.mouse_HMG_1	14	1	-	4.909876372156937	-1.2000145430917704	AAACATTAGTAATGTTG
chr4	62923412	62923413	chr4:62923413:G:A	rs13125267	G	A	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr4	62927617	62927618	chr4:62927618:A:G	rs139450458	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr4	63393672	63393673	chr4:63393673:T:A	rs7668217	T	A	T	Sox3.mouse_HMG_1	15	1	+	3.9155132066530003	0.41866958486052963	AAACAATTCAACTCTTT
chr4	63528737	63528738	chr4:63528738:C:T	rs12645084	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr4	63873692	63873693	chr4:63873693:T:C	rs984927947	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr4	63906928	63906929	chr4:63906929:T:C	rs1349182	T	C	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr4	64217365	64217366	chr4:64217366:T:C	rs73823556	T	C	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr4	64359272	64359273	chr4:64359273:T:C	rs11734131	T	C	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr4	64584823	64584824	chr4:64584824:A:G	rs6815653	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr4	64584849	64584850	chr4:64584850:A:T	rs6815664	A	T	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr4	64884079	64884080	chr4:64884080:G:A	rs10011900	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr4	65021213	65021214	chr4:65021214:G:A	rs9993074	G	A	-	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr4	65356593	65356594	chr4:65356594:G:A	rs12651698	G	A	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr4	65651345	65651346	chr4:65651346:G:A	rs79064065	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr4	65846467	65846468	chr4:65846468:T:C	rs10866166	T	C	C	Sox3.mouse_HMG_1	14	1	+	2.8864818269158827	-3.223409088332824	AAACAATTTATGTGTGT
chr4	65853329	65853330	chr4:65853330:C:T	rs17756441	C	T	C	Sox3.mouse_HMG_1	3	1	+	13.144617561573458	7.161841443439142	AAACAATGATAGTGTAA
chr4	65932651	65932652	chr4:65932652:C:T	rs11131629	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr4	66275656	66275657	chr4:66275657:T:C	rs183072642	T	C	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr4	67375362	67375363	chr4:67375363:A:G	rs920482	A	G	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr4	67931637	67931638	chr4:67931638:C:A	rs353175	C	A	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr4	67961859	67961860	chr4:67961860:G:A	rs4260588	G	A	G	Sox3.mouse_HMG_1	13	1	+	4.615823108005868	-1.4922826820200474	GAACAATGGCATTGACC
chr4	67996243	67996244	chr4:67996244:C:T	rs1438407	C	T	c	Sox3.mouse_HMG_1	13	1	-	6.515479020871787	0.40737323084587124	TCACAATAACATTGTGG
chr4	68577533	68577534	chr4:68577534:C:T	rs6829482	C	T	c	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr4	68819452	68819453	chr4:68819453:A:G	rs72636565	A	G	.	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr4	68864534	68864535	chr4:68864535:T:G	rs113251770	T	G	t	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr4	68864547	68864548	chr4:68864548:A:G	rs77168292	A	G	g	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr4	69718319	69718320	chr4:69718320:G:A	rs4694242	G	A	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr4	69718364	69718365	chr4:69718365:T:G	rs13138435	T	G	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr4	69728357	69728358	chr4:69728358:A:T	rs13115602	A	T	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr4	69766207	69766208	chr4:69766208:T:G	rs4694035	T	G	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr4	70249335	70249336	chr4:70249336:T:A	rs3775740	T	A	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr4	70249342	70249343	chr4:70249343:G:A	rs3775739	G	A	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr4	70356465	70356466	chr4:70356466:G:A	rs61271106	G	A	G	Sox3.mouse_HMG_1	11	1	+	5.95895776156425	2.2244803345185025	CAACAATTGCCGTGTTA
chr4	70383723	70383724	chr4:70383724:T:A	rs10000799	T	A	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr4	70511514	70511515	chr4:70511515:G:C	rs28606581	G	C	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr4	70541436	70541437	chr4:70541437:T:C	rs28408923	T	C	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr4	71029223	71029224	chr4:71029224:A:G	rs77592672	A	G	a	Sox3.mouse_HMG_1	5	1	+	4.347871181961157	-2.378262295341299	ATGCAATGGCATTGTGG
chr4	71051161	71051162	chr4:71051162:A:G	rs12511905	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr4	71127345	71127346	chr4:71127346:T:G	rs78366729	T	G	T	Sox3.mouse_HMG_1	12	1	-	2.8597406479371976	2.2414671363524574	AAACATTATTATAGTAT
chr4	71209263	71209264	chr4:71209264:C:A	rs2045009	C	A	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr4	71833370	71833371	chr4:71833371:C:T	rs717889	C	T	.	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr4	72109750	72109751	chr4:72109751:A:G	rs115815780	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr4	72563920	72563921	chr4:72563921:T:C	rs1518489	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr4	72768578	72768579	chr4:72768579:G:C	rs6446873	G	C	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr4	72817173	72817174	chr4:72817174:A:G	rs371949483	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr4	72931510	72931511	chr4:72931511:T:G	rs6446907	T	G	G	Sox3.mouse_HMG_1	1	1	-	4.068836151357278	-1.5690187449038346	GAACAAAGGCAATGTTG
chr4	73717507	73717508	chr4:73717508:C:A	rs74446360	C	A	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr4	73865560	73865561	chr4:73865561:G:T	rs3117598	G	T	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr4	74229505	74229506	chr4:74229506:G:T	rs115691528	G	T	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr4	74319043	74319044	chr4:74319044:A:G	rs16850918	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr4	74502238	74502239	chr4:74502239:A:G	rs1797581	A	G	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr4	74504521	74504522	chr4:74504522:A:G	rs3113928	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr4	74504558	74504559	chr4:74504559:A:T	rs3113929	A	T	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr4	74516480	74516481	chr4:74516481:T:C	rs10805076	T	C	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr4	74534873	74534874	chr4:74534874:T:G	rs146960534	T	G	T	Sox3.mouse_HMG_1	2	1	-	2.9593008454812857	-3.4660340342400273	AAACAATCAGATAGTTT
chr4	74548001	74548002	chr4:74548002:T:C	rs4694696	T	C	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr4	74780167	74780168	chr4:74780168:T:C	rs9997663	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr4	75364881	75364882	chr4:75364882:C:T	rs3853185	C	T	C	Sox3.mouse_HMG_1	6	1	+	4.752209899773292	11.398300669402213	CAACAACAATATTGATA
chr4	75468888	75468889	chr4:75468889:G:C	rs6825648	G	C	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr4	75477400	75477401	chr4:75477401:A:G	rs1600100	A	G	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr4	76072190	76072191	chr4:76072191:A:G	rs9995300	A	G	G	Sox3.mouse_HMG_1	14	1	-	3.46918449858081	-2.6407064166678973	ATACAGTTAAAGTGTTT
chr4	76118732	76118733	chr4:76118733:G:A	rs530342338	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr4	76238727	76238728	chr4:76238728:G:A	rs1441919	G	A	G	Sox3.mouse_HMG_1	3	1	-	4.977749579616316	-1.0050265385180044	AAACAATAAAGTTTTTT
chr4	76238842	76238843	chr4:76238843:G:A	rs1441917	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr4	76388940	76388941	chr4:76388941:A:G	rs2136051	A	G	A	Sox3.mouse_HMG_1	10	1	+	4.88307412003102	-2.0251710389403192	AAACCATAGCATTATTG
chr4	76591341	76591342	chr4:76591342:C:T	rs1349755918	C	T	t	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr4	76611370	76611371	chr4:76611371:G:A	rs62300927	G	A	G	Sox3.mouse_HMG_1	12	1	-	1.3156286991923998	7.522094284410251	AAACAACGAGATCGTTT
chr4	76903101	76903102	chr4:76903102:G:A	rs74585540	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr4	76903135	76903136	chr4:76903136:A:G	rs2703116	A	G	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr4	77220670	77220671	chr4:77220671:C:A	rs17581744	C	A	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr4	77394292	77394293	chr4:77394293:C:T	rs6843922	C	T	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr4	77395162	77395163	chr4:77395163:A:G	rs28858493	A	G	g	Sox3.mouse_HMG_1	6	1	-	5.068340936086275	-1.577749833542646	GCACAGTGACATTGTTA
chr4	77696366	77696367	chr4:77696367:T:G	rs13152237	T	G	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr4	78437854	78437855	chr4:78437855:C:G	rs2903470	C	G	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr4	78845465	78845466	chr4:78845466:A:G	rs17003465	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr4	79082987	79082988	chr4:79082988:G:A	rs73828204	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr4	79622403	79622404	chr4:79622404:C:A	rs13133572	C	A	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr4	79651297	79651298	chr4:79651298:T:C	rs779534713	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr4	80012480	80012481	chr4:80012481:A:G	rs141969892	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.5469251960957857	-3.1792082812066704	CTACAATGGTAGAGTTA
chr4	80198856	80198857	chr4:80198857:T:C	rs11099077	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr4	80330043	80330044	chr4:80330044:C:T	rs6811219	C	T	T	Sox3.mouse_HMG_1	8	1	+	7.260519748078249	7.573258972988791	CAACCATGCCATTGTAT
chr4	80611608	80611609	chr4:80611609:A:G	rs146027887	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr4	81466955	81466956	chr4:81466956:G:A	rs3973151	G	A	N	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr4	81481295	81481296	chr4:81481296:T:C	rs17558376	T	C	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr4	81508635	81508636	chr4:81508636:T:C	rs1043554919	T	C	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr4	81666724	81666725	chr4:81666725:A:C	rs28534043	A	C	C	Sox3.mouse_HMG_1	5	1	+	2.744612191938026	-4.06853266235406	AGACAATGACCTGGTTT
chr4	81722097	81722098	chr4:81722098:C:A	rs7697168	C	A	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr4	81845104	81845105	chr4:81845105:C:G	rs539093	C	G	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr4	82230489	82230490	chr4:82230490:T:C	chr4:82230490:T:C	T	C	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr4	82374762	82374763	chr4:82374763:T:A	rs2288337	T	A	T	Sox3.mouse_HMG_1	1	1	-	2.529912633828793	-2.3604262924454087	AAGCAAAAACAATGTTT
chr4	82850884	82850885	chr4:82850885:T:C	rs4693518	T	C	T	Sox3.mouse_HMG_1	9	1	+	2.260168873852941	2.2958749987375087	AAACAAGTATAGTTTTG
chr4	83272212	83272213	chr4:83272213:C:T	rs6841889	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr4	83483054	83483055	chr4:83483055:C:T	rs34620667	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr4	83574778	83574779	chr4:83574779:G:A	rs62303966	G	A	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr4	83582541	83582542	chr4:83582542:A:C	rs1046042910	A	C	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr4	84151816	84151817	chr4:84151817:C:T	rs1997478	C	T	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr4	84855402	84855403	chr4:84855403:A:G	rs11936719	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr4	85334446	85334447	chr4:85334447:A:G	rs450572	A	G	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr4	85437399	85437400	chr4:85437400:C:G	chr4:85437400:C:G	C	G	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr4	85521231	85521232	chr4:85521232:A:C	rs141735234	A	C	A	Sox3.mouse_HMG_1	6	1	-	4.251009926199974	-2.6574451078964363	GAATAATAGCATTGCTG
chr4	85653248	85653249	chr4:85653249:G:T	rs12644703	G	T	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr4	85953274	85953275	chr4:85953275:T:C	rs346490	T	C	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr4	85969776	85969777	chr4:85969777:C:T	rs6813736	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr4	86131334	86131335	chr4:86131335:G:C	rs4407492	G	C	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr4	86186360	86186361	chr4:86186361:T:G	rs17011445	T	G	G	Sox3.mouse_HMG_1	12	1	+	4.117894898689249	-2.450233171978373	CAACAATTACAGTTTAG
chr4	86203424	86203425	chr4:86203425:T:G	rs79147616	T	G	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr4	86483038	86483039	chr4:86483039:C:A	rs78793213	C	A	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr4	86508171	86508172	chr4:86508172:C:T	rs72665722	C	T	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr4	86517939	86517940	chr4:86517940:C:A	rs72665729	C	A	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr4	86592425	86592426	chr4:86592426:G:A	rs72665771	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr4	87131066	87131067	chr4:87131067:T:C	rs342467	T	C	C	Sox3.mouse_HMG_1	4	1	-	2.7955980029884886	-4.0167270889887465	GAACATGGTCATTGTTA
chr4	87224073	87224074	chr4:87224074:A:T	rs71607411	A	T	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr4	87382962	87382963	chr4:87382963:A:G	rs7677036	A	G	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr4	87427722	87427723	chr4:87427723:C:G	rs7673045	C	G	G	Sox3.mouse_HMG_1	6	1	+	1.9802117982053944	1.7178475337379049	GAACAGCATTAGTGTTT
chr4	87559189	87559190	chr4:87559190:T:C	rs77063449	T	C	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr4	88009017	88009018	chr4:88009018:G:T	rs79078497	G	T	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr4	88106687	88106688	chr4:88106688:G:C	rs7681519	G	C	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr4	88108099	88108100	chr4:88108100:A:C	rs2622628	A	C	C	Sox3.mouse_HMG_1	8	1	-	2.908552517530561	2.7019602809884584	AAACAAGATTGGTGTTT
chr4	88452031	88452032	chr4:88452032:C:T	rs34402587	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr4	88850595	88850596	chr4:88850596:G:A	rs192014948	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr4	89134747	89134748	chr4:89134748:A:C	rs1398946	A	C	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr4	89134762	89134763	chr4:89134763:A:G	rs1398945	A	G	A	Sox3.mouse_HMG_1	9	1	-	10.758687170548113	10.794393295432682	AAAGAATTATATTGTTG
chr4	89382704	89382705	chr4:89382705:A:G	rs7677756	A	G	a	Sox3.mouse_HMG_1	14	1	+	5.4679569265134855	4.32678502342658	AAACAATACAATTTATT
chr4	89743642	89743643	chr4:89743643:C:T	rs3822086	C	T	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr4	89834925	89834926	chr4:89834926:T:G	rs2035268	T	G	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr4	89907073	89907074	chr4:89907074:T:A	chr4:89907074:T:A	T	A	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr4	90341230	90341231	chr4:90341231:C:A	rs7663503	C	A	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr4	90826020	90826021	chr4:90826021:A:G	rs59618564	A	G	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr4	90842946	90842947	chr4:90842947:G:A	rs11725878	G	A	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr4	90842983	90842984	chr4:90842984:C:T	rs11725824	C	T	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr4	91128146	91128147	chr4:91128147:C:G	rs6532278	C	G	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr4	91220404	91220405	chr4:91220405:T:C	rs11097307	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr4	91256377	91256378	chr4:91256378:G:A	rs113636894	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr4	91452466	91452467	chr4:91452467:A:G	rs6834106	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr4	91764169	91764170	chr4:91764170:C:T	rs10033467	C	T	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr4	91958972	91958973	chr4:91958973:C:T	rs1602073	C	T	c	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr4	92648678	92648679	chr4:92648679:C:T	rs34340904	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr4	93830522	93830523	chr4:93830523:A:G	rs28648558	A	G	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr4	94084635	94084636	chr4:94084636:T:G	rs562772648	T	G	-	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr4	94360511	94360512	chr4:94360512:A:T	rs3919616	A	T	T	Sox3.mouse_HMG_1	7	1	-	2.377940268842159	3.4194190538070037	AAACATTTCTTTTGTTA
chr4	94365389	94365390	chr4:94365390:G:C	rs6419132	G	C	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr4	94547931	94547932	chr4:94547932:C:T	rs28579984	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr4	94690793	94690794	chr4:94690794:T:C	rs2055793	T	C	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr4	94930582	94930583	chr4:94930583:T:C	rs76173361	T	C	T	Sox3.mouse_HMG_1	2	1	-	1.456686294044673	-2.9512486849357877	CAACATTCCCATTGTAT
chr4	95017424	95017425	chr4:95017425:G:A	rs568440380	G	A	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr4	95017441	95017442	chr4:95017442:A:G	rs10018945	A	G	G	Sox3.mouse_HMG_1	1	1	+	7.281117553032011	2.953684209629319	AAGCAATGTTAGTGTGG
chr4	95371981	95371982	chr4:95371982:G:A	rs79887252	G	A	G	Sox3.mouse_HMG_1	1	1	+	5.883160363012227	10.210593706414919	GGACAATTGCACTGTTT
chr4	95507413	95507414	chr4:95507414:C:G	rs7698621	C	G	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr4	95627406	95627407	chr4:95627407:A:C	rs6820560	A	C	A	Sox3.mouse_HMG_1	5	1	+	10.10032719124896	3.287182336956873	GCACAATGACAGTGTTG
chr4	96407951	96407952	chr4:96407952:T:C	chr4:96407952:T:C	T	C	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr4	96713583	96713584	chr4:96713584:G:A	rs72671960	G	A	G	Sox3.mouse_HMG_1	4	1	+	5.410703336130226	12.223028428107462	TAACGATGGTATTGTAA
chr4	97279485	97279486	chr4:97279486:C:T	rs1462758	C	T	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr4	98027798	98027799	chr4:98027799:A:G	rs783919	A	G	G	Sox3.mouse_HMG_1	11	1	-	4.918725037698598	-1.138731071261754	AAGCAATGCTATTCTTC
chr4	98574024	98574025	chr4:98574025:C:A	rs17027779	C	A	C	Sox3.mouse_HMG_1	13	1	-	1.8774573521148972	-4.491662263280637	AAATGATGACATTGTGG
chr4	98662126	98662127	chr4:98662127:T:C	rs76489462	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr4	100009924	100009925	chr4:100009925:A:G	rs732386	A	G	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr4	100791465	100791466	chr4:100791466:G:T	rs76977712	G	T	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr4	100797879	100797880	chr4:100797880:C:A	rs79561959	C	A	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr4	101285818	101285819	chr4:101285819:C:T	rs72921877	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr4	102615103	102615104	chr4:102615104:C:T	rs230547	C	T	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr4	103904175	103904176	chr4:103904176:G:T	rs3846438	G	T	.	Sox3.mouse_HMG_1	3	1	-	3.744398011360552	-2.980315451503148	AAACAAAATCAGTATTT
chr4	103904210	103904211	chr4:103904211:T:C	rs72948816	T	C	.	Sox3.mouse_HMG_1	4	1	-	2.215337867953972	-4.596987224023267	GAAAAAAGTTAGTGTTT
chr4	104780396	104780397	chr4:104780397:G:A	rs964967118	G	A	G	Sox3.mouse_HMG_1	8	1	+	3.624703409961747	4.651116884972384	CAGCAATGGTAGTGGTG
chr4	104780418	104780419	chr4:104780419:A:G	rs72664153	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr4	105066757	105066758	chr4:105066758:C:T	rs168989	C	T	T	Sox3.mouse_HMG_1	7	1	-	3.2838869953921757	2.787816675614865	AAAAAATGGAAGAGTTT
chr4	105127133	105127134	chr4:105127134:T:C	rs17035289	T	C	T	Sox3.mouse_HMG_1	6	1	+	7.256849329559442	0.610758559930523	AAGCAATTAGATTGTTG
chr4	105150439	105150440	chr4:105150440:T:A	rs763480	T	A	A	Sox3.mouse_HMG_1	7	1	-	3.418648894820591	2.3771701098557463	AAACAATAACATTAAAA
chr4	105710712	105710713	chr4:105710713:A:G	rs11727735	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr4	105951395	105951396	chr4:105951396:G:A	rs4616758	G	A	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr4	106057163	106057164	chr4:106057164:T:G	rs4698956	T	G	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr4	106370434	106370435	chr4:106370435:A:G	rs56338587	A	G	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr4	106565903	106565904	chr4:106565904:T:C	rs17358000	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr4	107483774	107483775	chr4:107483775:T:C	chr4:107483775:T:C	T	C	t	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr4	107644452	107644453	chr4:107644453:G:A	rs11934943	G	A	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr4	107648713	107648714	chr4:107648714:T:C	rs2726658	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr4	108237665	108237666	chr4:108237666:G:T	rs1503249	G	T	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr4	108237694	108237695	chr4:108237695:C:T	rs1499829	C	T	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr4	108638112	108638113	chr4:108638113:T:C	rs75662402	T	C	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr4	109053376	109053377	chr4:109053377:C:T	rs77116007	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr4	109233881	109233882	chr4:109233882:A:G	rs17304953	A	G	A	Sox3.mouse_HMG_1	6	1	-	6.732585974613091	0.08649520498417024	AGACCATGAAATTGTTG
chr4	109641086	109641087	chr4:109641087:A:G	rs2346835	A	G	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr4	110197400	110197401	chr4:110197401:C:G	chr4:110197401:C:G	C	G	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr4	110197415	110197416	chr4:110197416:T:G	rs140478925	T	G	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr4	110222892	110222893	chr4:110222893:A:G	rs4698816	A	G	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr4	110414565	110414566	chr4:110414566:C:T	rs1879057	C	T	c	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr4	110669087	110669088	chr4:110669088:C:T	rs2122076	C	T	C	Sox3.mouse_HMG_1	8	1	+	2.4170609663081977	2.72980019121874	AAAGAATGCCATTGAAG
chr4	111132826	111132827	chr4:111132827:C:T	rs6828479	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr4	111562740	111562741	chr4:111562741:T:G	rs11722462	T	G	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr4	111959257	111959258	chr4:111959258:C:T	rs2016740	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr4	111986868	111986869	chr4:111986869:G:T	rs12644757	G	T	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr4	112423768	112423769	chr4:112423769:C:T	rs1989926	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr4	112423805	112423806	chr4:112423806:T:C	rs7654378	T	C	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr4	112512887	112512888	chr4:112512888:C:T	rs62314757	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr4	112518133	112518134	chr4:112518134:A:G	rs1948083	A	G	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr4	113146241	113146242	chr4:113146242:A:T	rs2171058	A	T	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr4	113146252	113146253	chr4:113146253:A:G	rs2171057	A	G	G	Sox3.mouse_HMG_1	10	1	+	4.064119509391765	-2.8441256495795733	GAGCAATGACACTGTCT
chr4	113446156	113446157	chr4:113446157:C:T	rs78104782	C	T	C	Sox3.mouse_HMG_1	15	1	+	3.400709059294239	7.703210857089722	GAGCAATGATATTGACA
chr4	113510916	113510917	chr4:113510917:C:T	rs17046126	C	T	T	Sox3.mouse_HMG_1	4	1	+	5.475170811678566	5.886176100162345	TAGCCATTATATTGTTT
chr4	113946530	113946531	chr4:113946531:G:A	rs28700902	G	A	-	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr4	113955824	113955825	chr4:113955825:C:A	rs17677515	C	A	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr4	114271236	114271237	chr4:114271237:A:G	rs139348676	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr4	114949874	114949875	chr4:114949875:C:T	rs998359	C	T	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr4	116439397	116439398	chr4:116439398:T:C	rs1863340	T	C	T	Sox3.mouse_HMG_1	6	1	+	2.2183758668541906	-4.427714902774729	AGACTATAATTTTGTTT
chr4	116603613	116603614	chr4:116603614:C:G	rs7679562	C	G	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr4	116810093	116810094	chr4:116810094:G:A	rs10049964	G	A	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr4	116810115	116810116	chr4:116810116:C:T	rs2221208	C	T	C	Sox3.mouse_HMG_1	1	1	-	2.5701459109950955	6.897579254397785	AGACAATGAAATGGATT
chr4	117400078	117400079	chr4:117400079:T:C	rs17866921	T	C	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr4	117604611	117604612	chr4:117604612:C:G	rs17867515	C	G	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr4	118941310	118941311	chr4:118941311:C:T	rs56722335	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr4	119027722	119027723	chr4:119027723:T:C	rs28460020	T	C	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr4	119042370	119042371	chr4:119042371:A:G	rs17264415	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr4	119317918	119317919	chr4:119317919:A:G	rs10213267	A	G	a	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr4	119320746	119320747	chr4:119320747:T:C	rs1799883	T	C	c	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr4	119336968	119336969	chr4:119336969:C:G	rs1814814	C	G	C	Sox3.mouse_HMG_1	6	1	+	3.236992001944376	2.9746277374768857	CAACAACAACAGTATTT
chr4	119518093	119518094	chr4:119518094:A:G	rs534526888	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr4	119657384	119657385	chr4:119657385:A:G	rs7664440	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr4	119726675	119726676	chr4:119726676:T:C	rs11098535	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr4	119829210	119829211	chr4:119829211:A:G	rs57830771	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr4	120071486	120071487	chr4:120071487:C:T	rs2892890	C	T	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr4	120401967	120401968	chr4:120401968:A:G	rs1448065	A	G	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr4	120820100	120820101	chr4:120820101:A:G	rs343187	A	G	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr4	121176382	121176383	chr4:121176383:A:G	rs28530598	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr4	121178379	121178380	chr4:121178380:C:T	rs1877167	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr4	121178399	121178400	chr4:121178400:T:G	rs9307490	T	G	G	Sox3.mouse_HMG_1	5	1	-	4.085312595036584	-2.7278322592555035	TTGCAATTCCAGTGTTT
chr4	121198186	121198187	chr4:121198187:G:A	rs114945578	G	A	G	Sox3.mouse_HMG_1	2	1	+	8.028091380735388	12.436026359715845	AAGCAATGACATTTTTA
chr4	121398347	121398348	chr4:121398348:T:C	rs13126125	T	C	T	Sox3.mouse_HMG_1	1	1	+	7.331736546529275	6.584220576542365	GTACAATACAAGTGTTA
chr4	121819833	121819834	chr4:121819834:G:A	rs3217767	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr4	121822911	121822912	chr4:121822912:A:C	rs769240	A	C	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr4	121993613	121993614	chr4:121993614:T:C	rs77054138	T	C	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr4	122285396	122285397	chr4:122285397:G:A	rs193294687	G	A	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr4	122688005	122688006	chr4:122688006:T:G	rs443176	T	G	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr4	123986416	123986417	chr4:123986417:T:A	rs188440818	T	A	T	Sox3.mouse_HMG_1	3	1	-	6.075590243852182	6.817527588581559	AAAAAAAAACATTGTTT
chr4	124035633	124035634	chr4:124035634:T:C	rs560040388	T	C	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr4	124322631	124322632	chr4:124322632:G:A	rs78323649	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr4	124505355	124505356	chr4:124505356:A:C	rs17008248	A	C	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr4	124867475	124867476	chr4:124867476:C:G	rs4834007	C	G	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr4	125042611	125042612	chr4:125042612:G:A	rs7693038	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr4	125481418	125481419	chr4:125481419:C:T	rs10026056	C	T	C	Sox3.mouse_HMG_1	16	1	-	1.9201251324370474	1.4862936877159403	GGACAATGAAAATGTCG
chr4	125515235	125515236	chr4:125515236:T:A	rs75383253	T	A	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr4	125520479	125520480	chr4:125520480:A:G	rs1506351	A	G	A	Sox3.mouse_HMG_1	12	1	-	2.309005901357115	-3.8974596838607365	AAACCATTTCAGTGATA
chr4	125561213	125561214	chr4:125561214:A:C	rs75110870	A	C	A	Sox3.mouse_HMG_1	9	1	+	2.1290102107270354	3.582654597556136	TAAAAAAGAAATTGTTG
chr4	125873683	125873684	chr4:125873684:A:T	rs115018394	A	T	A	Sox3.mouse_HMG_1	7	1	+	3.1469565565426327	2.105477771577789	GAACAATATTCTTTTTA
chr4	126304620	126304621	chr4:126304621:G:C	rs4833339	G	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr4	126633633	126633634	chr4:126633634:T:A	rs313102	T	A	T	Sox3.mouse_HMG_1	12	1	+	2.91313193308454	-2.675060140548571	AAACAATAAGAATGTAA
chr4	126702904	126702905	chr4:126702905:C:T	rs62324175	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr4	126785295	126785296	chr4:126785296:A:G	rs1246882490	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr4	126951587	126951588	chr4:126951588:C:T	rs78687859	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr4	127407801	127407802	chr4:127407802:G:A	chr4:127407802:G:A	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr4	127783726	127783727	chr4:127783727:A:G	rs72616949	A	G	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr4	128456935	128456936	chr4:128456936:C:T	rs2133464	C	T	T	Sox3.mouse_HMG_1	11	1	-	4.737952245987162	1.0034748189414147	GTACAATGACAGTGCTG
chr4	128609932	128609933	chr4:128609933:T:A	rs1216415	T	A	t	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr4	128684278	128684279	chr4:128684279:A:G	rs113109687	A	G	a	Sox3.mouse_HMG_1	12	1	-	3.238620403029751	-2.9678451821881007	AAAAAATTTAAGTGTCT
chr4	129336708	129336709	chr4:129336709:A:T	rs6534726	A	T	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr4	129498839	129498840	chr4:129498840:A:C	rs599733	A	C	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr4	130073773	130073774	chr4:130073774:A:G	rs2391581	A	G	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr4	130154706	130154707	chr4:130154707:G:A	rs67052396	G	A	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr4	130704282	130704283	chr4:130704283:G:T	rs62317283	G	T	G	Sox3.mouse_HMG_1	3	1	-	7.76094396249977	1.0362304996360727	AAACAATTATATGGTCT
chr4	130704300	130704301	chr4:130704301:G:A	rs10020498	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr4	130747907	130747908	chr4:130747908:G:C	rs17492514	G	C	-	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr4	131248633	131248634	chr4:131248634:C:T	rs6855567	C	T	T	Sox3.mouse_HMG_1	10	1	-	2.044661631421509	8.952906790392847	GAAAAATGGCGGTGTTT
chr4	132001643	132001644	chr4:132001644:T:C	rs13131569	T	C	C	Sox3.mouse_HMG_1	12	1	+	3.27679194944883	-2.9296736357690216	AAACATTAGCAGTTTTT
chr4	132126278	132126279	chr4:132126279:G:A	rs17548919	G	A	-	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr4	132126288	132126289	chr4:132126289:G:A	rs10019344	G	A	-	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr4	132231672	132231673	chr4:132231673:A:G	rs1542852	A	G	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr4	132446499	132446500	chr4:132446500:G:A	rs1827133	G	A	g	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr4	132614864	132614865	chr4:132614865:G:A	rs1347414	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr4	132614877	132614878	chr4:132614878:T:C	rs11099195	T	C	T	Sox3.mouse_HMG_1	6	1	+	3.5652341638592633	-3.0808566057696565	AAAAAATGCCATTGAAT
chr4	132618535	132618536	chr4:132618536:C:G	rs13135040	C	G	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr4	132709184	132709185	chr4:132709185:G:T	rs13104921	G	T	T	Sox3.mouse_HMG_1	13	1	+	6.19667938628876	-0.17244022910677514	AAACAATAATGTGGTTT
chr4	132865768	132865769	chr4:132865769:A:G	rs6817623	A	G	A	Sox3.mouse_HMG_1	2	1	+	3.3342207453005073	-1.0737142336799537	AAACACTGTTAGTCTTG
chr4	133320753	133320754	chr4:133320754:T:G	chr4:133320754:T:G	T	G	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr4	133659311	133659312	chr4:133659312:A:G	rs2724287	A	G	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr4	134935497	134935498	chr4:134935498:C:G	rs4863923	C	G	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr4	135013663	135013664	chr4:135013664:A:T	rs10021166	A	T	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr4	135044992	135044993	chr4:135044993:A:G	rs4530692	A	G	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr4	135045007	135045008	chr4:135045008:G:A	rs4645267	G	A	G	Sox3.mouse_HMG_1	3	1	-	2.049198375061436	-3.9335777430728873	GATCTATGACATTGTGT
chr4	135220641	135220642	chr4:135220642:G:T	rs182580440	G	T	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr4	135776955	135776956	chr4:135776956:G:C	rs7672191	G	C	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr4	135862395	135862396	chr4:135862396:T:C	rs35249883	T	C	T	Sox3.mouse_HMG_1	6	1	+	3.2558056139948963	-3.3902851556340226	GAACAATTCTTCTGTTT
chr4	136012661	136012662	chr4:136012662:C:G	rs12711206	C	G	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr4	136806315	136806316	chr4:136806316:C:T	rs78744658	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr4	136819316	136819317	chr4:136819317:G:C	rs898429	G	C	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr4	137372429	137372430	chr4:137372430:C:A	rs11730485	C	A	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr4	137528657	137528658	chr4:137528658:C:G	rs10006580	C	G	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr4	137587264	137587265	chr4:137587265:G:C	rs72722243	G	C	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr4	137610066	137610067	chr4:137610067:G:A	rs4863760	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr4	137999246	137999247	chr4:137999247:A:G	rs77775464	A	G	A	Sox3.mouse_HMG_1	14	1	-	6.748777682852857	0.6388867676041504	AGACAATTGCCTTGTTT
chr4	138182955	138182956	chr4:138182956:T:C	rs115001718	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr4	138182956	138182957	chr4:138182957:G:C	rs544450234	G	C	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr4	138222364	138222365	chr4:138222365:A:C	chr4:138222365:A:C	A	C	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr4	138252653	138252654	chr4:138252654:T:C	rs11731740	T	C	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr4	138719238	138719239	chr4:138719239:G:A	rs62324140	G	A	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr4	138943553	138943554	chr4:138943554:A:C	rs6535799	A	C	C	Sox3.mouse_HMG_1	0	1	+	2.687975420490964	1.0983839081387643	AACCAACATTAGTGTTG
chr4	139449312	139449313	chr4:139449313:T:G	rs62323104	T	G	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr4	139555145	139555146	chr4:139555146:T:C	rs574201454	T	C	T	Sox3.mouse_HMG_1	11	1	+	4.02525066261778	-2.032205446342573	AAACAACGAGATTGTAT
chr4	139860763	139860764	chr4:139860764:T:C	rs2667365	T	C	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr4	140053858	140053859	chr4:140053859:T:C	rs1474246	T	C	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr4	140636786	140636787	chr4:140636787:T:C	rs78282365	T	C	T	Sox3.mouse_HMG_1	6	1	+	2.3406235632657126	-4.3054672063632085	AGCCAATTGAAGTGTTG
chr4	140717917	140717918	chr4:140717918:T:C	rs901687	T	C	C	Sox3.mouse_HMG_1	5	1	-	2.840728130678002	-3.885405346624453	GAACAAGTATATTGCTA
chr4	141048356	141048357	chr4:141048357:T:C	rs10510579	T	C	T	Sox3.mouse_HMG_1	12	1	+	4.346596903218012	-1.8598686819998391	ATACAAAAATAGTGTTA
chr4	141095018	141095019	chr4:141095019:G:A	rs10454797	G	A	g	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr4	141609455	141609456	chr4:141609456:C:T	rs1519548	C	T	C	Sox3.mouse_HMG_1	9	1	+	5.674779429372175	5.6390733044876065	GCACAATAACACTGTTG
chr4	141654414	141654415	chr4:141654415:A:C	rs115468796	A	C	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr4	141977398	141977399	chr4:141977399:G:A	rs1604236	G	A	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr4	142121149	142121150	chr4:142121150:A:C	rs28458916	A	C	A	Sox3.mouse_HMG_1	5	1	+	5.922895158026429	-0.8902496962656564	GAGCAATTTTATTCTTT
chr4	142265337	142265338	chr4:142265338:G:A	rs2627828	G	A	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr4	142308480	142308481	chr4:142308481:A:G	rs1907107	A	G	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr4	142308489	142308490	chr4:142308490:C:T	rs1907106	C	T	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr4	142563729	142563730	chr4:142563730:G:A	rs111705685	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr4	142971098	142971099	chr4:142971099:A:C	rs7692881	A	C	C	Sox3.mouse_HMG_1	6	1	-	9.760250075058709	2.8517950409623007	AAGCAATGAGATTGTTT
chr4	143669432	143669433	chr4:143669433:C:T	rs77093119	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr4	144222204	144222205	chr4:144222205:A:G	rs80072643	A	G	A	Sox3.mouse_HMG_1	16	1	+	5.203155164818797	5.636986609539904	AAAAAATGTCACTGTTA
chr4	144354146	144354147	chr4:144354147:T:A	rs115966499	T	A	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr4	144584485	144584486	chr4:144584486:C:T	rs10013495	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr4	144706305	144706306	chr4:144706306:A:G	rs3733424	A	G	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr4	145293818	145293819	chr4:145293819:A:G	rs2355239	A	G	G	Sox3.mouse_HMG_1	12	1	-	3.405221473880176	-2.8012441113376756	AAACAGTGCCTGTGTTT
chr4	145415072	145415073	chr4:145415073:A:C	rs932804647	A	C	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr4	145503970	145503971	chr4:145503971:A:G	rs187181469	A	G	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr4	145537917	145537918	chr4:145537918:A:C	rs150504007	A	C	A	Sox3.mouse_HMG_1	16	1	-	3.367584316988176	2.4017326762310636	AAATAATTTCAGTTTTT
chr4	145799256	145799257	chr4:145799257:G:A	rs7688506	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr4	146049533	146049534	chr4:146049534:G:A	rs9997873	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr4	146135398	146135399	chr4:146135399:G:A	rs6832576	G	A	G	Sox3.mouse_HMG_1	13	1	+	1.5798709209662127	-4.528234869059703	CAAAAATACCAGAGTTG
chr4	146191342	146191343	chr4:146191343:G:A	rs11100918	G	A	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr4	146368366	146368367	chr4:146368367:T:G	rs6846294	T	G	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr4	146368369	146368370	chr4:146368370:A:C	rs2244321	A	C	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr4	146368407	146368408	chr4:146368408:T:G	rs76248328	T	G	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr4	147050920	147050921	chr4:147050921:C:T	rs10446782	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr4	147054802	147054803	chr4:147054803:T:C	rs144733637	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr4	147201303	147201304	chr4:147201304:A:G	rs1507488	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr4	147731242	147731243	chr4:147731243:A:C	rs72951430	A	C	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr4	147943356	147943357	chr4:147943357:T:C	rs6815620	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr4	148022049	148022050	chr4:148022050:A:G	rs6856145	A	G	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr4	148285578	148285579	chr4:148285579:C:T	rs137973438	C	T	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr4	148344660	148344661	chr4:148344661:G:C	rs61761514	G	C	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr4	148573361	148573362	chr4:148573362:G:A	rs977064	G	A	A	Sox3.mouse_HMG_1	3	1	-	4.1938420822651	-1.7889340358692207	GAACAATTGCATTCTGA
chr4	148799966	148799967	chr4:148799967:T:C	rs12509344	T	C	C	Sox3.mouse_HMG_1	14	1	+	2.65172365075147	-3.458167264497237	CATGAATGGCAGTGTTT
chr4	148835077	148835078	chr4:148835078:C:T	rs17584189	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr4	149136821	149136822	chr4:149136822:C:T	rs34222745	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr4	149136826	149136827	chr4:149136827:T:C	rs1438766	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr4	149466348	149466349	chr4:149466349:T:C	rs7675037	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr4	149785959	149785960	chr4:149785960:C:T	rs116365658	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr4	150934174	150934175	chr4:150934175:G:A	rs76087649	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr4	151612810	151612811	chr4:151612811:A:G	rs778700163	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr4	151670234	151670235	chr4:151670235:G:A	rs3172567	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr4	151692389	151692390	chr4:151692390:A:G	rs6822737	A	G	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr4	151745615	151745616	chr4:151745616:A:C	rs10023298	A	C	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr4	151764253	151764254	chr4:151764254:A:T	rs1429558	A	T	A	Sox3.mouse_HMG_1	14	1	-	2.0755040683457175	-3.2099732803493746	AAGCATTGACTTTGTTT
chr4	152462044	152462045	chr4:152462045:A:G	rs78989168	A	G	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr4	152634621	152634622	chr4:152634622:A:G	rs6847616	A	G	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr4	152901422	152901423	chr4:152901423:T:C	rs78265029	T	C	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr4	153189822	153189823	chr4:153189823:G:A	rs76974256	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr4	153488725	153488726	chr4:153488726:A:C	rs979655784	A	C	A	Sox3.mouse_HMG_1	2	1	+	5.712949822089625	-0.7123850576316887	GAACAACAGAATTGTAT
chr4	153488756	153488757	chr4:153488757:G:A	rs10213539	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr4	153524445	153524446	chr4:153524446:T:C	rs12500924	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr4	153524454	153524455	chr4:153524455:A:G	rs79860579	A	G	A	Sox3.mouse_HMG_1	15	1	-	5.8634460165391795	1.5609442187436962	AAACAATGTCAGTCATT
chr4	153851507	153851508	chr4:153851508:T:A	rs4696510	T	A	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr4	154208475	154208476	chr4:154208476:G:A	rs559546011	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr4	154657797	154657798	chr4:154657798:G:T	rs62324911	G	T	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr4	154959049	154959050	chr4:154959050:C:A	rs370641117	C	A	C	Sox3.mouse_HMG_1	3	1	+	5.30593940500411	-1.418774057859588	CAGCAATGCCATTTTTA
chr4	155593241	155593242	chr4:155593242:G:A	rs190248700	G	A	G	Sox3.mouse_HMG_1	10	1	-	3.3284666262966134	3.0801871017108615	TAACAATGGCCATGTTA
chr4	155742444	155742445	chr4:155742445:G:A	rs7684247	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr4	155881716	155881717	chr4:155881717:C:T	rs549123624	C	T	C	Sox3.mouse_HMG_1	9	1	+	4.3205006521718285	4.284794527287261	AAACAACTCCATGGTTT
chr4	155911994	155911995	chr4:155911995:A:G	rs7674417	A	G	A	Sox3.mouse_HMG_1	2	1	+	2.9586795308409797	-1.4492554481394817	AGACAATGTCAGTTTTC
chr4	156187137	156187138	chr4:156187138:A:G	rs13115068	A	G	G	Sox3.mouse_HMG_1	1	1	+	4.123268514315253	-0.2041648290874381	TATCAATAACAGTGTGG
chr4	156195035	156195036	chr4:156195036:T:C	rs62327790	T	C	C	Sox3.mouse_HMG_1	14	1	+	10.672325039855002	4.562434124606294	AAACAAGAACAGTGTTT
chr4	156411445	156411446	chr4:156411446:G:T	rs6820018	G	T	G	Sox3.mouse_HMG_1	3	1	-	2.6502037113448105	-4.0745097515188915	CAACAATAGCAGCATTT
chr4	156614505	156614506	chr4:156614506:A:T	rs6834098	A	T	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr4	156976401	156976402	chr4:156976402:A:G	rs1443237	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr4	157997741	157997742	chr4:157997742:C:T	rs4691449	C	T	t	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr4	158046657	158046658	chr4:158046658:C:G	rs78009561	C	G	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr4	158633311	158633312	chr4:158633312:T:C	rs144210289	T	C	T	Sox3.mouse_HMG_1	14	1	+	10.197637552748342	4.087746637499634	CACCAATGGCATTGTTG
chr4	159006966	159006967	chr4:159006967:T:C	rs999410	T	C	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr4	159434593	159434594	chr4:159434594:G:A	rs4690942	G	A	.	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr4	159483432	159483433	chr4:159483433:T:G	rs17309147	T	G	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr4	159925985	159925986	chr4:159925986:A:T	rs28556745	A	T	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr4	161581564	161581565	chr4:161581565:G:T	rs34837397	G	T	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr4	162563691	162563692	chr4:162563692:G:A	rs7698288	G	A	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr4	162563715	162563716	chr4:162563716:A:G	rs6856230	A	G	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr4	163269672	163269673	chr4:163269673:G:A	rs74495978	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr4	163587879	163587880	chr4:163587880:T:C	rs7695517	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr4	163753878	163753879	chr4:163753879:C:T	rs2131861	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr4	163969917	163969918	chr4:163969918:G:A	rs4056332	G	A	A	Sox3.mouse_HMG_1	13	1	+	3.7006307831281546	-2.4074750068977613	GAAGAAAATCATTGTTT
chr4	164149582	164149583	chr4:164149583:T:C	rs17044581	T	C	T	Sox3.mouse_HMG_1	8	1	-	1.2274523473687142	0.20103887235807705	AAACAAAGACAACGTTT
chr4	164440403	164440404	chr4:164440404:C:A	rs11931372	C	A	A	Sox3.mouse_HMG_1	3	1	+	1.683577482279937	-5.041135980583764	GCACAAAGATATTGTGT
chr4	164508953	164508954	chr4:164508954:G:A	rs145773605	G	A	G	Sox3.mouse_HMG_1	0	1	+	2.6439229008338203	4.01673956629536	GAGAAATGAAATTGTTC
chr4	165010282	165010283	chr4:165010283:C:T	rs17045896	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr4	165090589	165090590	chr4:165090590:A:G	rs190964994	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr4	167455540	167455541	chr4:167455541:A:G	rs2252437	A	G	g	Sox3.mouse_HMG_1	9	1	-	4.209120939377987	4.244827064262557	AAACAATGATATTAAGT
chr4	167613549	167613550	chr4:167613550:A:G	rs1518180	A	G	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr4	168088126	168088127	chr4:168088127:G:A	rs35296938	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr4	168088172	168088173	chr4:168088173:T:C	rs7668794	T	C	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr4	168208038	168208039	chr4:168208039:G:C	rs28403031	G	C	G	Sox3.mouse_HMG_1	3	1	-	5.93742153124308	-0.9696134884145701	AAACAATGTAAGTTTAT
chr4	168409265	168409266	chr4:168409266:G:A	rs72976829	G	A	G	Sox3.mouse_HMG_1	4	1	-	3.8747520509313857	4.285757339415166	GAACCATTACAGTGTGT
chr4	168604747	168604748	chr4:168604748:C:T	rs62335531	C	T	T	Sox3.mouse_HMG_1	11	1	+	3.599157270394819	9.656613379355173	TAACAATGCCACTGGTG
chr4	168604771	168604772	chr4:168604772:C:T	rs7658992	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr4	168668062	168668063	chr4:168668063:T:C	rs2723705	T	C	T	Sox3.mouse_HMG_1	5	1	-	15.857346069781967	9.131212592479512	AAACAATGTCAGTGTTA
chr4	169622931	169622932	chr4:169622932:C:T	rs4692571	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr4	170066484	170066485	chr4:170066485:A:G	rs1480544	A	G	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr4	171236187	171236188	chr4:171236188:G:A	rs10024424	G	A	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr4	171879871	171879872	chr4:171879872:C:T	rs13101636	C	T	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr4	172033909	172033910	chr4:172033910:A:T	rs12647912	A	T	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr4	172401874	172401875	chr4:172401875:G:A	rs335997	G	A	A	Sox3.mouse_HMG_1	3	1	-	2.07157990648221	-3.9111962116521113	GCACAATGCTAGTGGTA
chr4	172546935	172546936	chr4:172546936:G:A	rs75664962	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr4	172547983	172547984	chr4:172547984:A:G	rs1874505	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr4	172951876	172951877	chr4:172951877:C:G	rs17059052	C	G	c	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr4	173001926	173001927	chr4:173001927:T:C	rs141260787	T	C	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr4	173014095	173014096	chr4:173014096:A:G	rs73870347	A	G	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr4	173153105	173153106	chr4:173153106:G:A	rs6855544	G	A	G	Sox3.mouse_HMG_1	13	1	-	3.327116135460677	3.066102310091058	GAACATTAGCATTCTTG
chr4	173273383	173273384	chr4:173273384:A:G	rs74969003	A	G	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr4	173466525	173466526	chr4:173466526:G:T	rs142572685	G	T	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr4	173540979	173540980	chr4:173540980:T:C	rs56061970	T	C	T	Sox3.mouse_HMG_1	10	1	-	1.572652116267275	-5.335593042704066	GAAGAAAATCAGTGTTT
chr4	173685658	173685659	chr4:173685659:C:A	rs75002406	C	A	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr4	174144091	174144092	chr4:174144092:C:T	rs6856566	C	T	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr4	174266034	174266035	chr4:174266035:T:A	rs72702241	T	A	T	Sox3.mouse_HMG_1	6	1	+	4.091376313383402	-2.817078720713008	TAACAATTTCAGTCTAT
chr4	175423142	175423143	chr4:175423143:T:C	rs9994051	T	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr4	175451617	175451618	chr4:175451618:T:C	rs73013865	T	C	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr4	176238811	176238812	chr4:176238812:C:T	rs76064547	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr4	176575308	176575309	chr4:176575309:A:G	chr4:176575309:A:G	A	G	A	Sox3.mouse_HMG_1	7	1	+	4.536670929580117	5.032741249357428	GAACCATAACATTATTG
chr4	176575332	176575333	chr4:176575333:G:T	rs10520357	G	T	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr4	176928046	176928047	chr4:176928047:C:A	rs7691914	C	A	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr4	176928061	176928062	chr4:176928062:A:C	rs2728159	A	C	A	Sox3.mouse_HMG_1	7	1	+	11.230608979851617	6.105987164704159	AAACAATAAAAGTGTAA
chr4	176928086	176928087	chr4:176928087:C:G	rs2724763	C	G	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr4	176928296	176928297	chr4:176928297:T:C	rs11727688	T	C	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr4	176949354	176949355	chr4:176949355:A:G	rs2724754	A	G	A	Sox3.mouse_HMG_1	15	1	-	11.756168116474798	7.453666318679314	AAACAATGCAAATGTTT
chr4	177105944	177105945	chr4:177105945:T:C	rs12650543	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr4	177957969	177957970	chr4:177957970:G:C	rs6826177	G	C	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr4	178125485	178125486	chr4:178125486:C:T	rs11131851	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr4	178306686	178306687	chr4:178306687:G:A	rs6830610	G	A	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr4	178375493	178375494	chr4:178375494:G:A	chr4:178375494:G:A	G	A	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr4	179398538	179398539	chr4:179398539:C:T	rs111763279	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr4	179569842	179569843	chr4:179569843:C:T	rs3905711	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr4	179692191	179692192	chr4:179692192:T:C	rs12500438	T	C	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr4	179982324	179982325	chr4:179982325:T:A	rs62333133	T	A	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr4	180423161	180423162	chr4:180423162:T:A	rs11930869	T	A	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr4	180790832	180790833	chr4:180790833:A:G	rs139095077	A	G	A	Sox3.mouse_HMG_1	12	1	-	6.725745006729855	0.5192794215120036	TAACAAAGAAAGTGTTG
chr4	181290162	181290163	chr4:181290163:C:T	rs56227104	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr4	181329066	181329067	chr4:181329067:A:G	rs11132050	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr4	181827523	181827524	chr4:181827524:T:C	rs17072369	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr4	181897768	181897769	chr4:181897769:C:T	rs10520513	C	T	T	Sox3.mouse_HMG_1	8	1	+	3.297900355710275	3.610639580620817	AAACAATGCATTTATTA
chr4	182466082	182466083	chr4:182466083:A:G	rs17321615	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr4	182556049	182556050	chr4:182556050:C:T	rs13152633	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr4	183263985	183263986	chr4:183263986:C:G	rs150185381	C	G	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr4	183375531	183375532	chr4:183375532:C:T	rs11931607	C	T	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr4	183435064	183435065	chr4:183435065:C:T	rs13105651	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr4	183435076	183435077	chr4:183435077:T:G	rs6819955	T	G	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr4	183460248	183460249	chr4:183460249:G:A	rs13121440	G	A	G	Sox3.mouse_HMG_1	16	1	+	2.389857851960016	1.956026407238909	AAACAATAATATAGGCG
chr4	183541131	183541132	chr4:183541132:A:G	rs56077268	A	G	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr4	183559091	183559092	chr4:183559092:G:A	rs751903811	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr4	183576728	183576729	chr4:183576729:C:T	rs116012755	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr4	183960207	183960208	chr4:183960208:C:G	rs1379689536	C	G	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr4	184171083	184171084	chr4:184171084:A:G	rs28528708	A	G	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr4	184363387	184363388	chr4:184363388:T:A	rs35410414	T	A	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr4	184424935	184424936	chr4:184424936:A:G	rs10011243	A	G	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr4	184613534	184613535	chr4:184613535:C:T	rs28360675	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr4	184613570	184613571	chr4:184613571:A:C	rs6839175	A	C	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr4	184849639	184849640	chr4:184849640:A:G	rs6837920	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr4	185266311	185266312	chr4:185266312:T:C	rs115512049	T	C	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr4	185266313	185266314	chr4:185266314:A:T	rs181018708	A	T	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr4	185270333	185270334	chr4:185270334:G:T	rs3112870	G	T	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr4	185306377	185306378	chr4:185306378:T:G	rs753359	T	G	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr4	185718703	185718704	chr4:185718704:T:C	rs80035277	T	C	C	Sox3.mouse_HMG_1	15	1	+	4.945862965774246	0.6433611679787631	AAACAATGCACTTCTTT
chr4	185931541	185931542	chr4:185931542:A:G	rs4862597	A	G	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr4	185931587	185931588	chr4:185931588:T:A	chr4:185931588:T:A	T	A	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr4	186033027	186033028	chr4:186033028:G:A	rs10024771	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr4	186653392	186653393	chr4:186653393:T:C	rs328430	T	C	T	Sox3.mouse_HMG_1	9	1	+	4.5533995316248355	4.589105656509403	AAAGAATAATTTTGTTA
chr4	186728041	186728042	chr4:186728042:T:C	rs6830147	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr4	186728063	186728064	chr4:186728064:A:C	rs6852925	A	C	A	Sox3.mouse_HMG_1	10	1	+	6.754336429581791	0.18968097500052883	AAACAATATTAGTTTTC
chr4	186851634	186851635	chr4:186851635:A:G	rs28548345	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr4	186857929	186857930	chr4:186857930:T:C	rs443846	T	C	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr4	187366671	187366672	chr4:187366672:G:A	rs13116110	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr4	187941718	187941719	chr4:187941719:T:C	rs11943016	T	C	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr4	188031736	188031737	chr4:188031737:A:G	rs72722859	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr4	188106983	188106984	chr4:188106984:C:T	rs28706936	C	T	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr4	188429108	188429109	chr4:188429109:T:C	rs62351650	T	C	t	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr4	188663189	188663190	chr4:188663190:T:C	rs7664482	T	C	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr4	188811269	188811270	chr4:188811270:C:T	rs62341239	C	T	c	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr4	189341048	189341049	chr4:189341049:C:T	rs34649146	C	T	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr4	189476470	189476471	chr4:189476471:C:T	rs1456339	C	T	t	Sox3.mouse_HMG_1	0	1	-	4.029802989200775	5.402619654662314	GGACAATACAATTGGTG
chr4	189513254	189513255	chr4:189513255:A:G	rs7697014	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr4	189618532	189618533	chr4:189618533:A:C	rs72716885	A	C	A	Sox3.mouse_HMG_1	10	1	+	5.720898046233382	-0.8437574083478797	GAACATTTCTATTGTAT
chr5	46312	46313	chr5:46313:C:T	rs6898953	C	T	.	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr5	220498	220499	chr5:220499:T:C	rs62346526	T	C	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr5	442559	442560	chr5:442560:C:T	rs139173233	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr5	590342	590343	chr5:590343:T:C	rs72703070	T	C	t	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr5	802240	802241	chr5:802241:T:C	rs141529865	T	C	-	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr5	978652	978653	chr5:978653:G:A	rs80057422	G	A	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr5	1213552	1213553	chr5:1213553:G:A	rs7732589	G	A	G	Sox3.mouse_HMG_1	3	1	-	0.540009269291488	-5.442766848842832	AGACGATGCCATTGGTG
chr5	1415513	1415514	chr5:1415514:A:T	rs37022	A	T	A	Sox3.mouse_HMG_1	16	1	-	1.7116375757520754	0.311954490273856	ATACAAGGACAGTGTGT
chr5	1601670	1601671	chr5:1601671:C:G	rs6889684	C	G	-	Sox3.mouse_HMG_1	1	1	-	2.1864330041210924	0.8760114512626745	GGACCATGGCATTGTGT
chr5	2020159	2020160	chr5:2020160:C:T	rs4074914	C	T	c	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr5	2048099	2048100	chr5:2048100:A:C	rs4604223	A	C	A	Sox3.mouse_HMG_1	16	1	-	3.084389795518492	2.1185381547613793	CAAAAATTGTATCGTTT
chr5	2113557	2113558	chr5:2113558:C:A	rs11950809	C	A	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr5	2637712	2637713	chr5:2637713:C:T	rs323672	C	T	c	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr5	2723951	2723952	chr5:2723952:C:T	rs114846434	C	T	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr5	2947762	2947763	chr5:2947763:T:G	rs2934528	T	G	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr5	3341800	3341801	chr5:3341801:A:C	chr5:3341801:A:C	A	C	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr5	3485471	3485472	chr5:3485472:T:G	rs17685711	T	G	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr5	4022067	4022068	chr5:4022068:T:G	rs494376	T	G	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr5	4204795	4204796	chr5:4204796:C:A	rs7734785	C	A	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr5	4244000	4244001	chr5:4244001:C:T	rs17723858	C	T	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr5	4921276	4921277	chr5:4921277:A:G	rs1669748	A	G	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr5	5136093	5136094	chr5:5136094:T:C	rs7720806	T	C	C	Sox3.mouse_HMG_1	4	1	-	2.4015525380293994	-4.4107725539478375	TCACAATGGCAGAGTTA
chr5	5260897	5260898	chr5:5260898:C:T	rs2913655	C	T	.	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr5	5544401	5544402	chr5:5544402:G:A	rs113919855	G	A	g	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr5	5616917	5616918	chr5:5616918:A:G	rs62333449	A	G	G	Sox3.mouse_HMG_1	1	1	+	4.535144355158524	0.20771101175583262	AAAGAATAAATTTGTTT
chr5	5693528	5693529	chr5:5693529:A:T	rs256484	A	T	T	Sox3.mouse_HMG_1	1	1	+	3.925806962479731	-0.9645319637944708	GAACAAAACCATTTTTT
chr5	5754675	5754676	chr5:5754676:A:G	rs425855	A	G	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr5	6087350	6087351	chr5:6087351:T:C	rs307176	T	C	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr5	6215349	6215350	chr5:6215350:C:T	rs7727856	C	T	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr5	6216837	6216838	chr5:6216838:A:G	rs4702318	A	G	G	Sox3.mouse_HMG_1	12	1	-	1.39520244939466	-4.811263135823191	GAACAATGACTCTGTGT
chr5	6250656	6250657	chr5:6250657:C:A	chr5:6250657:C:A	C	A	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr5	6565804	6565805	chr5:6565805:C:A	rs116766265	C	A	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr5	6565819	6565820	chr5:6565820:T:G	rs13185529	T	G	G	Sox3.mouse_HMG_1	9	1	+	3.3880128308056134	-2.61292505086025	AAACAATCTTTGTGTTA
chr5	6605418	6605419	chr5:6605419:C:A	rs2303707	C	A	A	Sox3.mouse_HMG_1	13	1	-	4.719033601849245	-1.65008601354629	AAACAACAATGTTGTTA
chr5	6642123	6642124	chr5:6642124:T:C	rs8192164	T	C	T	Sox3.mouse_HMG_1	6	1	+	2.8407434038274473	-3.805347365801474	GAAGAATAGAATTCTTT
chr5	6747623	6747624	chr5:6747624:C:T	rs28381400	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr5	6873722	6873723	chr5:6873723:A:G	rs151003036	A	G	A	Sox3.mouse_HMG_1	6	1	-	5.439925933980128	-1.2061648356487924	GAGCAATGAACTTGTTG
chr5	6887172	6887173	chr5:6887173:A:C	rs990488	A	C	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr5	7597158	7597159	chr5:7597159:C:T	rs77869872	C	T	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr5	7597160	7597161	chr5:7597161:T:C	rs10078442	T	C	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr5	7712407	7712408	chr5:7712408:C:T	rs6883085	C	T	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr5	7755345	7755346	chr5:7755346:G:T	rs140902960	G	T	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr5	7887374	7887375	chr5:7887375:A:G	rs13190084	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr5	8730007	8730008	chr5:8730008:T:C	rs1501336	T	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr5	8893266	8893267	chr5:8893267:C:G	rs12522763	C	G	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr5	8893365	8893366	chr5:8893366:A:G	rs2963330	A	G	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr5	8919665	8919666	chr5:8919666:A:G	rs12519046	A	G	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr5	8919862	8919863	chr5:8919863:A:G	rs2962669	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr5	9140924	9140925	chr5:9140925:C:T	rs16882073	C	T	C	Sox3.mouse_HMG_1	9	1	+	2.8602015570110253	2.8244954321264557	AAACAATGCCACAGTGT
chr5	9423721	9423722	chr5:9423722:G:T	rs17258120	G	T	G	Sox3.mouse_HMG_1	16	1	+	3.300081031000766	4.265932671757879	GAACAATGCAAGTGAGG
chr5	9452193	9452194	chr5:9452194:C:T	rs13361369	C	T	C	Sox3.mouse_HMG_1	2	1	-	3.3552324208823094	7.7631673998627715	AAGCCATGTCATTGTAA
chr5	9701175	9701176	chr5:9701176:A:T	rs41482	A	T	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr5	9713528	9713529	chr5:9713529:A:C	rs62341162	A	C	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr5	9971569	9971570	chr5:9971570:T:C	rs73036428	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr5	10367770	10367771	chr5:10367771:A:T	rs2640713	A	T	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr5	10485680	10485681	chr5:10485681:C:T	rs532202598	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr5	10501796	10501797	chr5:10501797:G:T	rs2567586	G	T	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr5	10728878	10728879	chr5:10728879:A:G	rs55976501	A	G	G	Sox3.mouse_HMG_1	5	1	+	1.9881709493890702	-4.737962527913386	AATCAATGACATCATTT
chr5	10762026	10762027	chr5:10762027:A:G	rs6878848	A	G	A	Sox3.mouse_HMG_1	10	1	+	5.10758915808705	-1.8006560008842891	AAACATTTGCAGTGTAT
chr5	10797322	10797323	chr5:10797323:A:G	rs11133626	A	G	A	Sox3.mouse_HMG_1	12	1	-	5.501313720469726	-0.7051518647481259	AAAAAATACAATTGTAA
chr5	10797345	10797346	chr5:10797346:A:G	rs6881508	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr5	11425163	11425164	chr5:11425164:G:C	rs10474922	G	C	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr5	11520921	11520922	chr5:11520922:C:T	rs27352	C	T	C	Sox3.mouse_HMG_1	16	1	-	2.7451702404991942	2.311338795778087	ATATAATCACATTGTTG
chr5	11604226	11604227	chr5:11604227:A:G	rs73054088	A	G	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr5	11926029	11926030	chr5:11926030:G:A	rs1458484	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr5	12804522	12804523	chr5:12804523:T:G	rs35803412	T	G	-	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr5	12974995	12974996	chr5:12974996:C:T	rs1017451	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr5	13019783	13019784	chr5:13019784:G:A	rs17253223	G	A	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr5	13023122	13023123	chr5:13023123:C:T	rs35700763	C	T	C	Sox3.mouse_HMG_1	8	1	-	5.37772949013195	6.404142965142585	CAAGAATGGTATTGTCG
chr5	13250067	13250068	chr5:13250068:G:A	chr5:13250068:G:A	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr5	13435965	13435966	chr5:13435966:T:C	rs9312827	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr5	13771139	13771140	chr5:13771140:A:G	rs1995390	A	G	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr5	13816255	13816256	chr5:13816256:A:T	rs56086952	A	T	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr5	13989282	13989283	chr5:13989283:A:C	rs10038542	A	C	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr5	14013086	14013087	chr5:14013087:G:A	rs4701593	G	A	G	Sox3.mouse_HMG_1	0	1	-	5.0555341371681894	4.621971324204145	CACCAATGCTATTGTGA
chr5	14054619	14054620	chr5:14054620:A:G	rs57287421	A	G	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr5	14058758	14058759	chr5:14058759:C:A	rs4702013	C	A	C	Sox3.mouse_HMG_1	7	1	-	1.1903746030867945	-0.34717450165536146	GGCCAATGGCAATGTTT
chr5	14058759	14058760	chr5:14058760:A:G	rs4702014	A	G	G	Sox3.mouse_HMG_1	6	1	-	1.1903746030867945	-5.455716166542126	GGCCAATGGCAATGTTT
chr5	14149415	14149416	chr5:14149416:A:C	rs13184751	A	C	A	Sox3.mouse_HMG_1	8	1	-	2.9494456506120628	2.7428534140699607	AAGCAAATTAAGTGTTT
chr5	14255457	14255458	chr5:14255458:T:G	rs354303	T	G	T	Sox3.mouse_HMG_1	11	1	+	6.9386160623133755	4.8106373954524955	CAACAGTGAAATTGTAT
chr5	14452731	14452732	chr5:14452732:T:C	rs27108	T	C	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr5	15338572	15338573	chr5:15338573:G:T	rs4348213	G	T	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr5	15687606	15687607	chr5:15687607:G:A	rs16867548	G	A	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr5	15752894	15752895	chr5:15752895:A:G	rs111366337	A	G	A	Sox3.mouse_HMG_1	9	1	-	6.486323547416829	6.522029672301398	GAACAATGATAGTGAAA
chr5	15993900	15993901	chr5:15993901:G:A	rs77067734	G	A	G	Sox3.mouse_HMG_1	12	1	-	2.2324327735922194	8.438898358810071	GAGCAATAGCATCGTAG
chr5	16008141	16008142	chr5:16008142:C:T	rs32830	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr5	16129020	16129021	chr5:16129021:T:C	rs3761733	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.3647245836405144	-3.7451663316081927	CAACATTTATATTTTTA
chr5	16366350	16366351	chr5:16366351:C:A	rs3849096	C	A	c	Sox3.mouse_HMG_1	13	1	-	5.729947626226341	-0.6391719891691936	AAACAATTCCGTTGTAA
chr5	16493565	16493566	chr5:16493566:T:C	rs71595968	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.584799596221407	-4.1413338810810485	TCACAATAACAGTTTTG
chr5	16493586	16493587	chr5:16493587:T:C	rs11133848	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr5	16792979	16792980	chr5:16792980:C:A	rs250356	C	A	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr5	16854595	16854596	chr5:16854596:T:C	rs11133865	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr5	16871113	16871114	chr5:16871114:G:T	rs253315	G	T	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr5	16931650	16931651	chr5:16931651:C:T	rs115656667	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr5	16983027	16983028	chr5:16983028:G:A	rs79522620	G	A	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr5	16992434	16992435	chr5:16992435:G:T	rs150470464	G	T	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr5	17193598	17193599	chr5:17193599:T:G	rs586087	T	G	t	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr5	17895625	17895626	chr5:17895626:C:G	rs67550057	C	G	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr5	17895636	17895637	chr5:17895637:T:C	rs3932273	T	C	T	Sox3.mouse_HMG_1	10	1	-	3.14770900180591	-3.760536157165429	ACACAATAGCAGTTTTA
chr5	18020237	18020238	chr5:18020238:G:T	rs1390633	G	T	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr5	18048573	18048574	chr5:18048574:C:T	rs13186768	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr5	18069124	18069125	chr5:18069125:A:G	rs633230	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr5	18069135	18069136	chr5:18069136:T:C	rs633217	T	C	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr5	19243406	19243407	chr5:19243407:C:A	rs12518540	C	A	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr5	19243437	19243438	chr5:19243438:T:C	rs6884800	T	C	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr5	19563389	19563390	chr5:19563390:G:A	rs770317	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr5	19902843	19902844	chr5:19902844:T:C	rs12658322	T	C	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr5	19903819	19903820	chr5:19903820:C:T	rs76353963	C	T	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr5	20575945	20575946	chr5:20575946:G:C	rs181364989	G	C	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr5	21031228	21031229	chr5:21031229:A:G	rs10462126	A	G	A	Sox3.mouse_HMG_1	16	1	-	5.517367623385082	1.9155709577641002	TAACCATTTAAGTGTTT
chr5	21160461	21160462	chr5:21160462:C:T	rs371821	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr5	21219446	21219447	chr5:21219447:G:C	rs294711	G	C	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr5	21765321	21765322	chr5:21765322:G:A	rs10941924	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr5	22425960	22425961	chr5:22425961:A:G	rs11948247	A	G	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr5	23103877	23103878	chr5:23103878:A:T	rs72752747	A	T	A	Sox3.mouse_HMG_1	6	1	-	4.138057667225424	-2.770397366870985	AAAAAATTATATTTTTA
chr5	23132758	23132759	chr5:23132759:C:A	rs1435231	C	A	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr5	23217457	23217458	chr5:23217458:G:A	rs10473629	G	A	G	Sox3.mouse_HMG_1	13	1	+	6.88022222193232	0.7721164319064044	GAACAATAAAGGTGTTG
chr5	23721643	23721644	chr5:23721644:C:T	rs13354689	C	T	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr5	23996780	23996781	chr5:23996781:G:A	rs6863680	G	A	N	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr5	25386385	25386386	chr5:25386386:A:C	rs10064529	A	C	A	Sox3.mouse_HMG_1	10	1	+	2.3901800014851657	-4.174475453096097	AAACATTTCCAGTCTTT
chr5	25386394	25386395	chr5:25386395:T:A	rs10066204	T	A	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr5	25759800	25759801	chr5:25759801:T:A	rs2054484	T	A	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr5	26900674	26900675	chr5:26900675:A:G	rs7726928	A	G	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr5	26918848	26918849	chr5:26918849:G:T	rs10942217	G	T	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr5	27551559	27551560	chr5:27551560:C:A	rs13179277	C	A	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr5	27844609	27844610	chr5:27844610:G:A	rs6450568	G	A	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr5	28013487	28013488	chr5:28013488:C:T	rs13182865	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr5	29077849	29077850	chr5:29077850:G:T	rs824328	G	T	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr5	29462536	29462537	chr5:29462537:C:T	rs78265136	C	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr5	29510556	29510557	chr5:29510557:T:A	rs1394673	T	A	T	Sox3.mouse_HMG_1	10	1	+	5.743200053831066	12.556135032998077	AAACAATACATTTGTGT
chr5	29717555	29717556	chr5:29717556:A:G	rs3114508	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr5	29717590	29717591	chr5:29717591:A:T	rs76030189	A	T	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr5	29854283	29854284	chr5:29854284:C:T	rs13153010	C	T	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr5	30050229	30050230	chr5:30050230:G:A	rs17510317	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr5	30997705	30997706	chr5:30997706:A:G	rs1500169	A	G	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr5	31347606	31347607	chr5:31347607:T:A	rs481823	T	A	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr5	31347612	31347613	chr5:31347613:C:T	rs481801	C	T	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr5	31442516	31442517	chr5:31442517:A:G	rs16901168	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr5	31697011	31697012	chr5:31697012:A:G	rs450484	A	G	A	Sox3.mouse_HMG_1	14	1	-	5.306437300025006	-0.8034536152237013	GCACAATTAAATTGTAA
chr5	31825637	31825638	chr5:31825638:C:T	rs184229653	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr5	31863313	31863314	chr5:31863314:A:T	rs62361595	A	T	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr5	31963193	31963194	chr5:31963194:G:C	rs1030473	G	C	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr5	31973100	31973101	chr5:31973101:T:C	rs7721251	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr5	31973132	31973133	chr5:31973133:C:G	rs76531879	C	G	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr5	32027458	32027459	chr5:32027459:G:C	rs60606802	G	C	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr5	32057544	32057545	chr5:32057545:G:A	rs161545	G	A	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr5	32201296	32201297	chr5:32201297:A:G	rs114048683	A	G	A	Sox3.mouse_HMG_1	7	1	+	2.2642194752624034	2.7602897950397143	AAGAAATAGCATTGATT
chr5	32276345	32276346	chr5:32276346:C:G	rs74710558	C	G	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr5	32434339	32434340	chr5:32434340:C:T	rs71629079	C	T	c	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr5	32434348	32434349	chr5:32434349:T:C	rs71629080	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr5	32790811	32790812	chr5:32790812:G:C	rs73073697	G	C	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr5	32833496	32833497	chr5:32833497:C:T	rs12655026	C	T	C	Sox3.mouse_HMG_1	11	1	-	2.8917245193659653	-0.8427529076797818	AAACAAATAAAGTGATT
chr5	33321441	33321442	chr5:33321442:T:C	rs74551123	T	C	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr5	33321449	33321450	chr5:33321450:G:T	rs17638207	G	T	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr5	33344142	33344143	chr5:33344143:C:T	rs7728927	C	T	C	Sox3.mouse_HMG_1	0	1	-	3.7317005202764966	5.104517185738036	GAATAATCACATTGTAT
chr5	33364577	33364578	chr5:33364578:C:T	rs268731	C	T	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr5	33423157	33423158	chr5:33423158:C:T	rs6899026	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr5	33444345	33444346	chr5:33444346:A:C	rs67450756	A	C	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr5	33525215	33525216	chr5:33525216:C:T	rs27405	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr5	33680242	33680243	chr5:33680243:G:A	rs35953152	G	A	G	Sox3.mouse_HMG_1	13	1	+	7.38226187248638	1.2741560824604645	AAACAATGTGATTGTGA
chr5	34051420	34051421	chr5:34051421:T:C	rs9292522	T	C	C	Sox3.mouse_HMG_1	8	1	-	4.038195691788642	3.0117822167780073	TAATCATGATATTGTTA
chr5	34329313	34329314	chr5:34329314:A:C	rs11747776	A	C	-	Sox3.mouse_HMG_1	16	1	+	4.280966595004146	2.0788530148613833	GAAAAATGACATTGGTA
chr5	34350863	34350864	chr5:34350864:A:C	rs144611102	A	C	-	Sox3.mouse_HMG_1	4	1	+	5.269042280845467	-1.4562714341421377	AAACAATTTTTGTGTTC
chr5	34468653	34468654	chr5:34468654:A:G	rs6451125	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr5	34523245	34523246	chr5:34523246:C:T	rs114418409	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr5	34523258	34523259	chr5:34523259:C:G	rs943316765	C	G	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr5	34687140	34687141	chr5:34687141:G:A	rs895357	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr5	34742514	34742515	chr5:34742515:A:G	rs2166373	A	G	G	Sox3.mouse_HMG_1	5	1	+	4.458811886274262	-2.2673215910281943	AAACAATTGCTTTTTTT
chr5	34762060	34762061	chr5:34762061:A:G	rs164311	A	G	G	Sox3.mouse_HMG_1	10	1	+	2.8990351129699516	-4.009210046001386	GTACAATCTTATTGTGT
chr5	34998125	34998126	chr5:34998126:C:T	rs149978651	C	T	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr5	35833614	35833615	chr5:35833615:A:G	rs11746643	A	G	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr5	36168668	36168669	chr5:36168669:T:A	rs13190112	T	A	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr5	36361593	36361594	chr5:36361594:G:T	rs4413557	G	T	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr5	36452696	36452697	chr5:36452697:T:A	rs16903050	T	A	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr5	36452722	36452723	chr5:36452723:C:G	rs2468511	C	G	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr5	36575686	36575687	chr5:36575687:C:T	chr5:36575687:C:T	C	T	C	Sox3.mouse_HMG_1	16	1	-	1.9219874212486878	1.4881559765275807	AAACAATCACATACTTG
chr5	36768403	36768404	chr5:36768404:A:G	rs10941317	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.812072821454012	-3.9140606558484423	AAACAATACTAATTTAT
chr5	37789958	37789959	chr5:37789959:T:C	rs7730024	T	C	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr5	37789986	37789987	chr5:37789987:A:G	rs2910718	A	G	G	Sox3.mouse_HMG_1	8	1	+	2.244227220226802	1.2178137452161653	AGAAAAAGACATTGTTT
chr5	37984970	37984971	chr5:37984971:A:G	rs74818966	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr5	38284605	38284606	chr5:38284606:G:A	rs6871786	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr5	38600711	38600712	chr5:38600712:A:G	rs10473103	A	G	A	Sox3.mouse_HMG_1	6	1	-	5.6274747058590044	-1.0186160637699144	GAACAATAATCTTCTTT
chr5	38753346	38753347	chr5:38753347:C:A	rs75845289	C	A	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr5	39139132	39139133	chr5:39139133:A:T	rs183642364	A	T	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr5	39283650	39283651	chr5:39283651:G:A	rs40119	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr5	39283673	39283674	chr5:39283674:C:G	rs42864	C	G	C	Sox3.mouse_HMG_1	11	1	-	3.4632010574833774	-0.4662763846160945	AAACAATAAAAGAGCTG
chr5	39374031	39374032	chr5:39374032:T:C	rs184056041	T	C	.	Sox3.mouse_HMG_1	5	1	-	4.783984975935307	-1.94214850136715	CTACAATGACTGTGTTT
chr5	39471073	39471074	chr5:39471074:T:C	rs3909475	T	C	C	Sox3.mouse_HMG_1	8	1	+	7.125862099780601	6.813122874870059	TAACAACATCAGTGTTG
chr5	39799378	39799379	chr5:39799379:C:T	rs56098596	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr5	39906570	39906571	chr5:39906571:C:G	rs565120	C	G	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr5	40391829	40391830	chr5:40391830:T:G	rs12658567	T	G	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr5	40395125	40395126	chr5:40395126:C:T	rs145774974	C	T	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr5	40606191	40606192	chr5:40606192:A:T	rs10473203	A	T	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr5	40628145	40628146	chr5:40628146:A:C	rs11955037	A	C	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr5	40688222	40688223	chr5:40688223:G:A	rs45446993	G	A	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr5	41405145	41405146	chr5:41405146:A:G	rs79025340	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr5	42187406	42187407	chr5:42187407:G:A	rs1393018	G	A	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr5	42426319	42426320	chr5:42426320:C:T	rs369651887	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr5	42804012	42804013	chr5:42804013:T:C	rs13168440	T	C	T	Sox3.mouse_HMG_1	15	1	-	10.478671455706454	9.40909621989289	AAGCAATGTTATTGTAG
chr5	43074302	43074303	chr5:43074303:C:T	rs73751007	C	T	c	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr5	43110563	43110564	chr5:43110564:G:A	rs62367758	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr5	43316037	43316038	chr5:43316038:A:C	rs1015795195	A	C	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr5	43556171	43556172	chr5:43556172:T:C	rs527732909	T	C	T	Sox3.mouse_HMG_1	6	1	+	2.2154862029239344	-4.430604566704985	GAACAATAGACTTGCTG
chr5	43556200	43556201	chr5:43556201:A:C	chr5:43556201:A:C	A	C	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr5	44110307	44110308	chr5:44110308:G:A	rs12515359	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr5	44230670	44230671	chr5:44230671:T:C	rs182572712	T	C	T	Sox3.mouse_HMG_1	6	1	+	4.722567316069395	-1.9235234535595214	AAACAATTGAATGGTAA
chr5	44497871	44497872	chr5:44497872:G:A	rs78946941	G	A	G	Sox3.mouse_HMG_1	8	1	+	8.16219389429172	9.188607369302353	AAACAATAGCACTGTAG
chr5	44774148	44774149	chr5:44774149:A:G	rs17322315	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.388487831147187	-2.2576029384817335	GAACAATAGCTTTATTT
chr5	45440924	45440925	chr5:45440925:C:G	rs6451802	C	G	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr5	46297142	46297143	chr5:46297143:T:C	rs4975911	T	C	.	Sox3.mouse_HMG_1	1	1	+	4.1923946012285995	3.444878631241691	CTACAAAAACAGTGTTT
chr5	49656892	49656893	chr5:49656893:A:T	chr5:49656893:A:T	A	T	.	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr5	49656914	49656915	chr5:49656915:T:A	chr5:49656915:T:A	T	A	.	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr5	49658019	49658020	chr5:49658020:G:C	rs1316647019	G	C	.	Sox3.mouse_HMG_1	3	1	-	3.8600784358891684	-3.0469565837684867	ATGCAATGGAATTGTGT
chr5	49658038	49658039	chr5:49658039:C:T	rs1248762273	C	T	.	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr5	50322175	50322176	chr5:50322176:G:A	rs62387347	G	A	g	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr5	50709691	50709692	chr5:50709692:T:G	rs1375127	T	G	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr5	50709705	50709706	chr5:50709706:C:T	rs77502439	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr5	50851094	50851095	chr5:50851095:C:A	rs152907	C	A	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr5	50853026	50853027	chr5:50853027:T:C	rs27264	T	C	T	Sox3.mouse_HMG_1	8	1	+	4.222319299383801	3.9095800744732587	AAGCAGTATTATTGTAT
chr5	50901160	50901161	chr5:50901161:C:T	rs72756179	C	T	C	Sox3.mouse_HMG_1	11	1	-	3.9142008827177732	0.17972345567202613	ACACAATGTAAGTGATG
chr5	51313643	51313644	chr5:51313644:C:G	rs11745678	C	G	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr5	51495479	51495480	chr5:51495480:C:T	rs62365472	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr5	51495500	51495501	chr5:51495501:C:T	rs10050915	C	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr5	51814522	51814523	chr5:51814523:G:A	rs12513736	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr5	51861003	51861004	chr5:51861004:T:G	rs78342977	T	G	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr5	52063049	52063050	chr5:52063050:A:T	rs12153748	A	T	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr5	52063117	52063118	chr5:52063118:C:G	rs10070998	C	G	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr5	52259859	52259860	chr5:52259860:T:A	rs4865717	T	A	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr5	52415904	52415905	chr5:52415905:A:G	rs7717591	A	G	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr5	52429119	52429120	chr5:52429120:G:C	rs1344589	G	C	.	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr5	52606072	52606073	chr5:52606073:T:C	rs58869458	T	C	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr5	52822861	52822862	chr5:52822862:A:G	rs2113051	A	G	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr5	53598043	53598044	chr5:53598044:A:G	rs12522861	A	G	A	Sox3.mouse_HMG_1	15	1	-	4.304143058382234	0.0016412605867507923	GTACTATTTCATTGTTG
chr5	53650348	53650349	chr5:53650349:A:G	rs72753660	A	G	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr5	53972565	53972566	chr5:53972566:C:T	rs702636	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr5	54072467	54072468	chr5:54072468:T:C	rs73754443	T	C	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr5	54102880	54102881	chr5:54102881:C:T	rs1703367	C	T	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr5	54278263	54278264	chr5:54278264:C:T	rs114214008	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr5	54360774	54360775	chr5:54360775:T:C	rs2407513	T	C	T	Sox3.mouse_HMG_1	4	1	-	2.3192178823970417	-4.493107209580194	AAACAAAGGAAGTTTTT
chr5	54458715	54458716	chr5:54458716:G:C	rs72762097	G	C	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr5	54621661	54621662	chr5:54621662:C:T	rs72754020	C	T	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr5	54739631	54739632	chr5:54739632:C:T	rs4410612	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr5	54939814	54939815	chr5:54939815:G:C	rs4367254	G	C	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr5	55598404	55598405	chr5:55598405:T:C	rs1540385	T	C	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr5	55634422	55634423	chr5:55634423:T:G	rs13156231	T	G	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr5	56183644	56183645	chr5:56183645:A:C	rs6871908	A	C	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr5	56355749	56355750	chr5:56355750:A:T	rs1997522	A	T	A	Sox3.mouse_HMG_1	4	1	+	3.494902838562882	-2.8194055879409445	AAACACTGACAGTTTTA
chr5	56458287	56458288	chr5:56458288:T:C	rs9292116	T	C	C	Sox3.mouse_HMG_1	6	1	+	1.8176550957689064	-4.828435673860012	CAGCAATTTCAGTGTCC
chr5	56458310	56458311	chr5:56458311:A:T	rs17713262	A	T	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr5	56482255	56482256	chr5:56482256:T:G	rs574427114	T	G	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr5	56534436	56534437	chr5:56534437:G:C	rs116770682	G	C	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr5	56746460	56746461	chr5:56746461:T:C	rs4312834	T	C	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr5	56818698	56818699	chr5:56818699:T:G	rs702691	T	G	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr5	56989947	56989948	chr5:56989948:G:C	rs4314360	G	C	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr5	57494538	57494539	chr5:57494539:C:T	rs1009204696	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr5	58045186	58045187	chr5:58045187:T:C	rs2046797	T	C	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr5	58046292	58046293	chr5:58046293:G:C	rs1009875	G	C	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr5	58187533	58187534	chr5:58187534:T:C	rs2910601	T	C	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr5	58294980	58294981	chr5:58294981:T:G	rs62366313	T	G	T	Sox3.mouse_HMG_1	12	1	+	8.447122942765018	1.8789948720973961	GGACAATGACACTGTTT
chr5	58326946	58326947	chr5:58326947:A:G	rs151914	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr5	58998863	58998864	chr5:58998864:G:C	rs4700316	G	C	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr5	59038360	59038361	chr5:59038361:C:A	rs148679608	C	A	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr5	59246490	59246491	chr5:59246491:G:A	rs27187	G	A	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr5	59267178	59267179	chr5:59267179:C:T	rs27695	C	T	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr5	59298967	59298968	chr5:59298968:T:C	rs72767706	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr5	59413184	59413185	chr5:59413185:C:T	rs258126	C	T	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr5	59416132	59416133	chr5:59416133:G:A	rs185417	G	A	A	Sox3.mouse_HMG_1	3	1	-	3.1552996168449075	-2.8274765012894147	CAACTGTGAAATTGTTG
chr5	59416144	59416145	chr5:59416145:T:C	rs62357500	T	C	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr5	59666820	59666821	chr5:59666821:T:C	rs184494277	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr5	59694731	59694732	chr5:59694732:G:A	rs17441825	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr5	59733057	59733058	chr5:59733058:A:G	rs79162970	A	G	A	Sox3.mouse_HMG_1	12	1	-	6.865893561836829	0.6594279766189778	AAACAAGGACAGTGTCT
chr5	59746050	59746051	chr5:59746051:A:C	rs7709094	A	C	A	Sox3.mouse_HMG_1	16	1	+	8.514900580279042	6.312787000136279	AAGCAATATCATTGTGA
chr5	59806447	59806448	chr5:59806448:T:C	rs2963824	T	C	C	Sox3.mouse_HMG_1	11	1	+	4.672253837391405	-1.385202271568948	AAACAATGTTGTTTTTA
chr5	59831435	59831436	chr5:59831436:T:G	rs73092830	T	G	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr5	59941297	59941298	chr5:59941298:T:C	rs2916866	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr5	59943817	59943818	chr5:59943818:T:G	rs4476687	T	G	T	Sox3.mouse_HMG_1	3	1	-	8.917200665508279	15.641914128371974	GAAAAATGGTAGTGTTT
chr5	60022889	60022890	chr5:60022890:A:G	rs13154041	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr5	60206708	60206709	chr5:60206709:T:A	chr5:60206709:T:A	T	A	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr5	60206739	60206740	chr5:60206740:G:A	chr5:60206740:G:A	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr5	60701748	60701749	chr5:60701749:A:G	rs1379113	A	G	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr5	60768509	60768510	chr5:60768510:G:A	rs1460959	G	A	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr5	60835823	60835824	chr5:60835824:C:T	rs12516248	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr5	61323501	61323502	chr5:61323502:T:A	rs7732782	T	A	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr5	61468693	61468694	chr5:61468694:C:T	rs114546161	C	T	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr5	61738485	61738486	chr5:61738486:C:G	rs6449550	C	G	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr5	61969454	61969455	chr5:61969455:T:A	rs147356736	T	A	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr5	62152674	62152675	chr5:62152675:T:C	chr5:62152675:T:C	T	C	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr5	62184461	62184462	chr5:62184462:T:C	rs3909436	T	C	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr5	62714264	62714265	chr5:62714265:C:T	rs10434535	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr5	63428813	63428814	chr5:63428814:A:G	rs553673985	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr5	63451193	63451194	chr5:63451194:G:A	rs4426873	G	A	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr5	64622605	64622606	chr5:64622606:T:C	rs6864394	T	C	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr5	64769356	64769357	chr5:64769357:C:A	rs59929214	C	A	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr5	64953126	64953127	chr5:64953127:C:T	rs78859503	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr5	65022005	65022006	chr5:65022006:T:A	rs266554	T	A	A	Sox3.mouse_HMG_1	2	1	-	3.4195446198739115	-2.4825421160828567	TGAGAATGACAGTGTTA
chr5	65214136	65214137	chr5:65214137:G:T	chr5:65214137:G:T	G	T	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr5	65255572	65255573	chr5:65255573:C:A	rs16893609	C	A	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr5	65264378	65264379	chr5:65264379:G:A	rs954609	G	A	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr5	65769581	65769582	chr5:65769582:T:C	rs252627	T	C	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr5	65811169	65811170	chr5:65811170:G:A	rs114391609	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr5	65825686	65825687	chr5:65825687:G:A	rs17244346	G	A	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr5	65835525	65835526	chr5:65835526:C:G	rs71632542	C	G	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr5	66441132	66441133	chr5:66441133:A:G	rs188072131	A	G	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr5	66628991	66628992	chr5:66628992:A:G	rs4700142	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr5	66826828	66826829	chr5:66826829:A:G	rs17214805	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.8197569400618514	-3.906376537240604	TAGCAATGACACTGTAA
chr5	66877903	66877904	chr5:66877904:T:G	rs25836	T	G	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr5	67063457	67063458	chr5:67063458:T:A	rs77591491	T	A	T	Sox3.mouse_HMG_1	15	1	-	9.229870186171967	12.726713807964439	GAACAATGTCATTGAAT
chr5	67180022	67180023	chr5:67180023:T:A	rs6890674	T	A	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr5	67245598	67245599	chr5:67245599:T:C	rs6895853	T	C	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr5	67258619	67258620	chr5:67258620:A:G	rs17224193	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr5	67413682	67413683	chr5:67413683:G:C	rs317973	G	C	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr5	67957236	67957237	chr5:67957237:T:C	rs1948330	T	C	T	Sox3.mouse_HMG_1	12	1	+	3.698916033420836	-2.5075495517970157	ACACAATACTAGTGCTG
chr5	68071884	68071885	chr5:68071885:A:G	chr5:68071885:A:G	A	G	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr5	68149428	68149429	chr5:68149429:A:G	rs78014415	A	G	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr5	68221817	68221818	chr5:68221818:T:G	rs831227	T	G	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr5	68287042	68287043	chr5:68287043:T:C	rs67913607	T	C	C	Sox3.mouse_HMG_1	4	1	-	4.11028224959122	-2.7020428423860148	CCACAATGAAAGTGATT
chr5	68287046	68287047	chr5:68287047:G:A	rs68180970	G	A	G	Sox3.mouse_HMG_1	0	1	-	4.11028224959122	3.676719436627174	CCACAATGAAAGTGATT
chr5	68365068	68365069	chr5:68365069:C:T	rs256500	C	T	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr5	68480506	68480507	chr5:68480507:T:C	rs10940165	T	C	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr5	68529305	68529306	chr5:68529306:A:C	rs56132153	A	C	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr5	68546264	68546265	chr5:68546265:A:G	rs12110138	A	G	A	Sox3.mouse_HMG_1	2	1	+	4.275245660987342	-0.13268931799311712	GAACAATGCAAATATTT
chr5	68714014	68714015	chr5:68714015:C:A	rs3844302	C	A	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr5	68924011	68924012	chr5:68924012:G:T	rs6886719	G	T	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr5	72294699	72294700	chr5:72294700:G:A	rs73127296	G	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr5	72448540	72448541	chr5:72448541:T:A	rs10069831	T	A	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr5	72507877	72507878	chr5:72507878:T:C	rs11745483	T	C	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr5	72507915	72507916	chr5:72507916:G:A	rs76632674	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr5	72597084	72597085	chr5:72597085:G:A	rs33425	G	A	A	Sox3.mouse_HMG_1	11	1	+	7.887837684516469	4.153360257470721	AGGCAATGAAAGTGTTT
chr5	72878969	72878970	chr5:72878970:G:A	rs73762224	G	A	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr5	73103067	73103068	chr5:73103068:C:T	rs686233	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr5	73229463	73229464	chr5:73229464:T:G	rs115946512	T	G	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr5	73267134	73267135	chr5:73267135:T:C	rs371429127	T	C	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr5	73418725	73418726	chr5:73418726:C:T	rs7707634	C	T	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr5	73760616	73760617	chr5:73760617:A:G	rs10942686	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr5	74021562	74021563	chr5:74021563:A:G	rs9293615	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr5	74037368	74037369	chr5:74037369:A:G	rs147203562	A	G	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr5	74384418	74384419	chr5:74384419:T:C	rs539548208	T	C	t	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr5	74545194	74545195	chr5:74545195:T:A	rs398884	T	A	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr5	74545209	74545210	chr5:74545210:T:G	rs398199	T	G	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr5	74671075	74671076	chr5:74671076:G:A	rs6453072	G	A	A	Sox3.mouse_HMG_1	11	1	-	4.907281747477813	10.964737856438168	TAACAATAATACTGATA
chr5	75109271	75109272	chr5:75109272:A:G	rs4361493	A	G	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr5	75262406	75262407	chr5:75262407:C:T	rs73116878	C	T	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr5	75277657	75277658	chr5:75277658:C:T	rs114791351	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr5	75533939	75533940	chr5:75533940:A:G	rs150397862	A	G	A	Sox3.mouse_HMG_1	15	1	+	3.596188743009809	2.526613507196245	GTACAATGATTTTGTAT
chr5	76396667	76396668	chr5:76396668:C:T	rs878199	C	T	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr5	76424823	76424824	chr5:76424824:G:A	rs10077372	G	A	G	Sox3.mouse_HMG_1	16	1	+	3.897778314096136	3.463946869375029	AAGTAATGAAATTGTAG
chr5	76457873	76457874	chr5:76457874:G:A	rs11739486	G	A	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr5	76643581	76643582	chr5:76643582:G:A	rs2909887	G	A	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr5	76778893	76778894	chr5:76778894:G:T	rs250754	G	T	T	Sox3.mouse_HMG_1	8	1	-	3.468377657874587	4.6009381212536615	AAACAATTCAAGAGTAA
chr5	76831309	76831310	chr5:76831310:G:A	rs2243057	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr5	77878201	77878202	chr5:77878202:A:G	rs142600865	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr5	78017425	78017426	chr5:78017426:T:C	rs3822645	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr5	78288326	78288327	chr5:78288327:A:C	rs12186414	A	C	C	Sox3.mouse_HMG_1	12	1	-	10.17793904099027	3.6098109703226475	TAACAATTATAGTGTCT
chr5	78288327	78288328	chr5:78288328:C:T	rs6880507	C	T	T	Sox3.mouse_HMG_1	11	1	-	10.17793904099027	6.443461613944525	TAACAATTATAGTGTCT
chr5	78467992	78467993	chr5:78467993:G:A	rs78554653	G	A	g	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr5	78903699	78903700	chr5:78903700:G:A	rs337863	G	A	G	Sox3.mouse_HMG_1	3	1	-	7.880554805297393	1.8977786871630746	AAACAATGAAATGGTCT
chr5	79796273	79796274	chr5:79796274:A:G	rs259100	A	G	G	Sox3.mouse_HMG_1	5	1	-	1.2351332580132026	1.3304434378175283	CCACATTTCTAGTGTTT
chr5	79887461	79887462	chr5:79887462:G:C	rs768573843	G	C	G	Sox3.mouse_HMG_1	6	1	+	2.5673161870780388	2.829680451545529	TAACAAGAGAAGTGTTC
chr5	80475093	80475094	chr5:80475094:G:A	rs183296707	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr5	80561517	80561518	chr5:80561518:T:G	rs249218	T	G	T	Sox3.mouse_HMG_1	7	1	+	3.7255356777043342	5.26308478244649	CAGAAATTTCATTGTTA
chr5	80655989	80655990	chr5:80655990:G:A	rs453544	G	A	A	Sox3.mouse_HMG_1	0	1	-	3.3779702460820715	2.9444074331180268	CTGCAATTTAAGTGTTT
chr5	80895594	80895595	chr5:80895595:G:T	rs10057510	G	T	G	Sox3.mouse_HMG_1	7	1	+	2.265880143956725	0.7283310392145703	CAGTAATGGTATTGTAA
chr5	81411554	81411555	chr5:81411555:C:T	rs111719136	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr5	81554346	81554347	chr5:81554347:A:G	rs35340025	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr5	81970988	81970989	chr5:81970989:T:C	rs114210450	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr5	82551295	82551296	chr5:82551296:A:G	rs17309089	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr5	82641674	82641675	chr5:82641675:C:T	rs146296877	C	T	C	Sox3.mouse_HMG_1	11	1	+	1.1069310478229668	7.164387156783319	AAACTGTGACACTGTTT
chr5	82707762	82707763	chr5:82707763:A:G	rs12188207	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr5	82931256	82931257	chr5:82931257:G:A	rs10805811	G	A	G	Sox3.mouse_HMG_1	3	1	-	5.764906295219445	-0.21786982291487744	CAACAATGACAAAGTTA
chr5	83530241	83530242	chr5:83530242:C:A	rs2541311	C	A	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr5	83552504	83552505	chr5:83552505:T:G	rs17205951	T	G	G	Sox3.mouse_HMG_1	6	1	+	0.9703744095976151	-5.938080624498794	GAACAATGCCACTTTCT
chr5	83720228	83720229	chr5:83720229:A:G	rs2124884	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr5	83926623	83926624	chr5:83926624:G:A	rs75293683	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr5	83926624	83926625	chr5:83926625:T:G	rs141795028	T	G	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr5	84274907	84274908	chr5:84274908:T:C	rs1445746	T	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr5	84636150	84636151	chr5:84636151:C:T	rs58203746	C	T	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr5	85676553	85676554	chr5:85676554:G:T	rs62365082	G	T	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr5	86305201	86305202	chr5:86305202:C:T	rs866506566	C	T	.	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr5	87158903	87158904	chr5:87158904:G:A	rs12517726	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr5	87191213	87191214	chr5:87191214:T:C	rs59965209	T	C	T	Sox3.mouse_HMG_1	1	1	-	3.374965184887722	-0.9524681585149685	GAACAATAAATGTGTGT
chr5	88467698	88467699	chr5:88467699:G:A	rs11952470	G	A	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr5	88848868	88848869	chr5:88848869:T:C	rs244751	T	C	T	Sox3.mouse_HMG_1	14	1	+	6.904353316240613	0.7944624009919063	AAATAATATTATTGTGA
chr5	88875469	88875470	chr5:88875470:T:C	rs116225175	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr5	88875490	88875491	chr5:88875491:T:C	rs190084807	T	C	T	Sox3.mouse_HMG_1	3	1	-	2.7696349165217966	2.5873133597278426	GAAAAATATAATGGTTT
chr5	89722784	89722785	chr5:89722785:C:T	rs17512887	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr5	89930881	89930882	chr5:89930882:G:A	rs72779123	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr5	89954291	89954292	chr5:89954292:A:G	rs72779133	A	G	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr5	90170522	90170523	chr5:90170523:C:A	rs188803715	C	A	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr5	90184358	90184359	chr5:90184359:G:T	rs7730092	G	T	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr5	90356560	90356561	chr5:90356561:G:A	rs7736550	G	A	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr5	91020672	91020673	chr5:91020673:T:C	rs116624629	T	C	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr5	91101911	91101912	chr5:91101912:A:G	rs6859589	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr5	91126398	91126399	chr5:91126399:T:C	rs2973442	T	C	C	Sox3.mouse_HMG_1	1	1	-	5.167875257341101	0.84044191393841	GAATAATTATATTCTTT
chr5	91366915	91366916	chr5:91366916:C:T	rs62376561	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr5	92163790	92163791	chr5:92163791:T:C	rs6452986	T	C	C	Sox3.mouse_HMG_1	1	1	-	1.3941140964417325	-2.933319246960963	TAAAAAGGGCAGTGTTT
chr5	92175139	92175140	chr5:92175140:G:A	rs4388238	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr5	92353396	92353397	chr5:92353397:G:A	rs115242525	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr5	92401438	92401439	chr5:92401439:G:A	rs13188917	G	A	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr5	92880081	92880082	chr5:92880082:G:A	rs12188632	G	A	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr5	93079209	93079210	chr5:93079210:C:T	rs995626	C	T	T	Sox3.mouse_HMG_1	11	1	-	3.9037298260092452	0.16925239896349753	AGACAAATACAGTGTTA
chr5	93079221	93079222	chr5:93079222:A:G	chr5:93079222:A:G	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr5	93192565	93192566	chr5:93192566:C:T	rs4285204	C	T	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr5	93192572	93192573	chr5:93192573:G:A	rs76787569	G	A	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr5	93192602	93192603	chr5:93192603:A:G	rs4632783	A	G	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr5	93250239	93250240	chr5:93250240:A:G	rs115628076	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr5	93406973	93406974	chr5:93406974:T:C	rs139969289	T	C	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr5	93462110	93462111	chr5:93462111:A:C	rs115305675	A	C	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr5	93605257	93605258	chr5:93605258:A:G	chr5:93605258:A:G	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr5	94240992	94240993	chr5:94240993:T:C	rs2015009	T	C	C	Sox3.mouse_HMG_1	6	1	+	2.7458277586898894	-3.9002630109390295	TAACAATGAAGTTATTG
chr5	94661180	94661181	chr5:94661181:A:G	rs3947399	A	G	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr5	94691305	94691306	chr5:94691306:G:A	rs10078304	G	A	G	Sox3.mouse_HMG_1	11	1	+	4.40423852230172	0.6697610952559736	AGACAATGCCTGTGTTA
chr5	94850811	94850812	chr5:94850812:C:A	rs159598	C	A	A	Sox3.mouse_HMG_1	3	1	+	2.2104558950350977	-4.514257567828605	GATCATTTTAATTGTTT
chr5	94918668	94918669	chr5:94918669:G:A	rs73776957	G	A	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr5	94918673	94918674	chr5:94918674:T:G	rs62365751	T	G	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr5	95080138	95080139	chr5:95080139:C:T	rs10060235	C	T	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr5	95486787	95486788	chr5:95486788:T:A	rs149966104	T	A	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr5	95554419	95554420	chr5:95554420:G:A	rs2731826	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr5	95732878	95732879	chr5:95732879:G:A	rs34894	G	A	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr5	95876056	95876057	chr5:95876057:C:T	rs154455	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr5	95908709	95908710	chr5:95908710:C:T	rs2548594	C	T	T	Sox3.mouse_HMG_1	13	1	-	1.859136379781218	-4.248969410244698	AAGGAATGCTAATGTTT
chr5	95962750	95962751	chr5:95962751:A:C	rs79358320	A	C	A	Sox3.mouse_HMG_1	15	1	-	1.9005838280575873	-2.6658350295484476	GATCAATGCCAGTTTTA
chr5	96547971	96547972	chr5:96547972:G:A	rs112896983	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr5	96645163	96645164	chr5:96645164:A:G	rs113758342	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr5	97062074	97062075	chr5:97062075:C:T	rs80095180	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr5	97062078	97062079	chr5:97062079:G:A	rs74686141	G	A	g	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr5	97528497	97528498	chr5:97528498:T:C	chr5:97528498:T:C	T	C	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr5	97908373	97908374	chr5:97908374:A:C	rs11741372	A	C	C	Sox3.mouse_HMG_1	7	1	+	3.2436313883402415	-1.8809904268072204	TTACAATATTAGGGTTT
chr5	98483848	98483849	chr5:98483849:T:C	rs7712277	T	C	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr5	99077290	99077291	chr5:99077291:T:G	rs6896400	T	G	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr5	99178119	99178120	chr5:99178120:T:G	rs10056524	T	G	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr5	99587037	99587038	chr5:99587038:G:A	rs2682159	G	A	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr5	99852051	99852052	chr5:99852052:C:A	rs61639350	C	A	-	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr5	99916648	99916649	chr5:99916649:T:C	rs2924613	T	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr5	100693515	100693516	chr5:100693516:A:T	rs2590424	A	T	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr5	100888396	100888397	chr5:100888397:T:C	rs141972560	T	C	T	Sox3.mouse_HMG_1	5	1	-	3.710442961948462	-3.0156905153539926	AAACAATTCCAGACTTT
chr5	100940162	100940163	chr5:100940163:C:T	rs113831677	C	T	c	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr5	101531350	101531351	chr5:101531351:G:A	rs350535	G	A	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr5	101537793	101537794	chr5:101537794:C:T	rs164620	C	T	c	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr5	101537815	101537816	chr5:101537816:A:G	rs164621	A	G	A	Sox3.mouse_HMG_1	2	1	+	4.778486559049913	0.3705515800694518	CAACCATTGAAGTGTTG
chr5	101811869	101811870	chr5:101811870:A:C	rs7725770	A	C	C	Sox3.mouse_HMG_1	14	1	-	4.273422818853699	-2.1532264329282986	AGAAAATATTAGTGTTA
chr5	102346679	102346680	chr5:102346680:T:C	rs1584716	T	C	T	Sox3.mouse_HMG_1	4	1	-	8.909181276957709	2.096856184980473	ACACAATTGCAGTGTTG
chr5	102390278	102390279	chr5:102390279:C:T	rs10062613	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr5	102407998	102407999	chr5:102407999:T:C	rs1376899	T	C	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr5	102584150	102584151	chr5:102584151:T:C	rs72781841	T	C	T	Sox3.mouse_HMG_1	6	1	+	3.31572262627784	-3.33036814335108	CAACAATGGAATGGATG
chr5	102726160	102726161	chr5:102726161:T:C	rs79708835	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr5	102726205	102726206	chr5:102726206:A:G	rs58847509	A	G	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr5	102780444	102780445	chr5:102780445:T:C	rs466986	T	C	T	Sox3.mouse_HMG_1	9	1	+	2.8748650436570538	2.9105711685416216	AAAAAATACTTGTGTTT
chr5	102864444	102864445	chr5:102864445:A:G	rs7708778	A	G	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr5	103095213	103095214	chr5:103095214:T:C	rs154265	T	C	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr5	103452674	103452675	chr5:103452675:C:T	rs1358453183	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr5	103461289	103461290	chr5:103461290:T:A	rs294064	T	A	A	Sox3.mouse_HMG_1	7	1	-	8.816382028613647	7.774903243648803	AAACAATAGCATTTTAT
chr5	103847722	103847723	chr5:103847723:T:C	rs6885169	T	C	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr5	103916672	103916673	chr5:103916673:T:C	rs808042	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr5	104327791	104327792	chr5:104327792:C:G	rs142236689	C	G	C	Sox3.mouse_HMG_1	8	1	-	6.488528485105666	6.382381496737226	AAGCAATGGAAATGTTG
chr5	104327818	104327819	chr5:104327819:A:G	rs349599	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr5	104540491	104540492	chr5:104540492:G:A	rs1363096	G	A	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr5	104821451	104821452	chr5:104821452:T:C	rs1540766	T	C	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr5	105077611	105077612	chr5:105077612:A:C	rs13183844	A	C	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr5	105532160	105532161	chr5:105532161:T:C	rs13185979	T	C	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr5	106509411	106509412	chr5:106509412:G:A	rs10900889	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr5	106611141	106611142	chr5:106611142:A:T	rs62379351	A	T	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr5	106736979	106736980	chr5:106736980:G:A	rs293644	G	A	A	Sox3.mouse_HMG_1	14	1	+	4.90679717626121	6.047969079348116	GAACAATAAGATTGGTG
chr5	107091971	107091972	chr5:107091972:T:A	rs147307092	T	A	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr5	107099853	107099854	chr5:107099854:T:C	rs11749835	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr5	107286913	107286914	chr5:107286914:G:A	rs13179809	G	A	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr5	107320983	107320984	chr5:107320984:A:G	rs73194912	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr5	107432401	107432402	chr5:107432402:A:C	rs154647	A	C	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr5	107557531	107557532	chr5:107557532:A:G	rs2161514	A	G	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr5	107557549	107557550	chr5:107557550:T:C	rs73198636	T	C	T	Sox3.mouse_HMG_1	4	1	-	4.862142814074517	-1.9501822779027211	GACAAATGTCATTGTTT
chr5	107572733	107572734	chr5:107572734:C:T	rs624548	C	T	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr5	107724698	107724699	chr5:107724699:C:T	rs56159505	C	T	-	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr5	107778316	107778317	chr5:107778317:A:G	rs13176407	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr5	107812505	107812506	chr5:107812506:A:G	rs6895001	A	G	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr5	108014661	108014662	chr5:108014662:C:G	rs2416523	C	G	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr5	108101323	108101324	chr5:108101324:C:A	rs10079990	C	A	C	Sox3.mouse_HMG_1	8	1	+	9.731640775603145	10.86420123898222	GAACAATGCCATGGTTA
chr5	108167170	108167171	chr5:108167171:T:C	rs34423	T	C	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr5	108508886	108508887	chr5:108508887:C:A	rs13188482	C	A	A	Sox3.mouse_HMG_1	9	1	+	5.022903939733523	3.5692595529044233	GAATAATGACATTGGTA
chr5	108651223	108651224	chr5:108651224:G:T	rs78160958	G	T	G	Sox3.mouse_HMG_1	16	1	+	5.802639464180296	6.768491104937408	CAGGAATAATATTGTTG
chr5	108859224	108859225	chr5:108859225:C:T	rs147399598	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr5	109191092	109191093	chr5:109191093:A:G	rs79861892	A	G	A	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr5	109368257	109368258	chr5:109368258:A:G	rs3805438	A	G	A	Sox3.mouse_HMG_1	1	1	+	4.786524748559795	0.45909140515710267	GAGCAATGACAGTGCTA
chr5	109580595	109580596	chr5:109580596:T:C	rs17479907	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr5	109668858	109668859	chr5:109668859:G:T	rs142109310	G	T	G	Sox3.mouse_HMG_1	3	1	-	10.027803955776124	3.303090492912424	GAACATTAACATTGTTA
chr5	109759629	109759630	chr5:109759630:G:A	rs75148706	G	A	G	Sox3.mouse_HMG_1	3	1	-	1.8639342086633353	-4.118841909470985	CAGCAATTCTAGTGCTA
chr5	110169564	110169565	chr5:110169565:G:A	rs4957877	G	A	g	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr5	110179189	110179190	chr5:110179190:T:C	rs13178884	T	C	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr5	110816091	110816092	chr5:110816092:G:C	rs13354207	G	C	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr5	111132054	111132055	chr5:111132055:G:A	rs1438672	G	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr5	111511332	111511333	chr5:111511333:A:G	rs152877	A	G	A	Sox3.mouse_HMG_1	4	1	+	6.03100745140542	-0.7813176405718173	TAACAATAACATTTATT
chr5	111511337	111511338	chr5:111511338:C:T	rs138664285	C	T	C	Sox3.mouse_HMG_1	9	1	+	6.03100745140542	5.995301326520851	TAACAATAACATTTATT
chr5	111638850	111638851	chr5:111638851:A:G	rs2118697	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.0610532328195363	-4.66508024448292	ACTCAATGATATGGTTT
chr5	111658207	111658208	chr5:111658208:T:C	rs1904154	T	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr5	111735032	111735033	chr5:111735033:T:C	rs73787360	T	C	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr5	111893022	111893023	chr5:111893023:A:G	rs115380464	A	G	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr5	111916397	111916398	chr5:111916398:A:G	rs1493457	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr5	112173531	112173532	chr5:112173532:A:G	rs6594568	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr5	112173534	112173535	chr5:112173535:A:G	rs6594569	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr5	112175237	112175238	chr5:112175238:C:T	rs777238202	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr5	112338144	112338145	chr5:112338145:C:G	rs13188902	C	G	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr5	112386916	112386917	chr5:112386917:T:A	rs151206467	T	A	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr5	112386944	112386945	chr5:112386945:C:G	rs17134454	C	G	G	Sox3.mouse_HMG_1	7	1	-	1.6785667429674536	-3.9421253919573185	GAACACTGTCAGTGGTG
chr5	112584825	112584826	chr5:112584826:G:A	rs12518872	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr5	112584841	112584842	chr5:112584842:T:C	rs72795818	T	C	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr5	112958776	112958777	chr5:112958777:G:A	rs469675	G	A	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr5	113372091	113372092	chr5:113372092:C:T	rs12516418	C	T	C	Sox3.mouse_HMG_1	3	1	+	11.908223194311338	5.925447076177017	GAACAATTTCATTGTGT
chr5	113515741	113515742	chr5:113515742:A:G	rs1833680	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr5	113645830	113645831	chr5:113645831:C:A	rs12189067	C	A	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr5	113693997	113693998	chr5:113693998:C:T	rs12513675	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr5	113813913	113813914	chr5:113813914:C:T	rs12520281	C	T	C	Sox3.mouse_HMG_1	13	1	-	1.899191589218633	-4.208914200807283	AATCAATGGAATTGGAT
chr5	114018207	114018208	chr5:114018208:G:T	chr5:114018208:G:T	G	T	G	Sox3.mouse_HMG_1	8	1	-	2.7268295973089116	3.8593900606879874	AAACAAGACCTGTGTTT
chr5	114148012	114148013	chr5:114148013:A:C	rs6873105	A	C	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr5	114245647	114245648	chr5:114245648:T:C	rs6880768	T	C	C	Sox3.mouse_HMG_1	12	1	+	7.176054333311617	0.9695887480937658	TAACAATATAAGTATTT
chr5	114420403	114420404	chr5:114420404:T:C	rs150042118	T	C	T	Sox3.mouse_HMG_1	10	1	-	2.0206191253753416	-4.887626033595997	AGACAATCACAGTATTT
chr5	114467883	114467884	chr5:114467884:C:G	rs112772339	C	G	C	Sox3.mouse_HMG_1	5	1	-	2.662462997610736	2.5754516206211067	CAACAGTGCCAGTGTGA
chr5	114544392	114544393	chr5:114544393:T:C	rs72803620	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr5	114789902	114789903	chr5:114789903:G:A	rs112348381	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr5	115492053	115492054	chr5:115492054:T:C	rs10463671	T	C	T	Sox3.mouse_HMG_1	6	1	+	12.859091363612817	6.2130005939838995	CAACAATGAAATTGTCT
chr5	115501869	115501870	chr5:115501870:G:A	rs181598906	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr5	115559782	115559783	chr5:115559783:C:T	rs256972	C	T	T	Sox3.mouse_HMG_1	11	1	-	3.4444761654811202	-0.2900012615646259	TAAGAATGACAGTGTCA
chr5	115786957	115786958	chr5:115786958:T:G	rs2650484	T	G	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr5	116071609	116071610	chr5:116071610:T:C	rs1605733	T	C	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr5	116132998	116132999	chr5:116132999:T:G	rs192696731	T	G	T	Sox3.mouse_HMG_1	1	1	-	2.09147716505219	-3.5463777312089197	CAGCAATGGAAGTATTA
chr5	116300466	116300467	chr5:116300467:A:G	rs58791417	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr5	116514086	116514087	chr5:116514087:C:T	rs112557435	C	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr5	116576799	116576800	chr5:116576800:T:A	rs3806914	T	A	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr5	116582949	116582950	chr5:116582950:G:A	rs10062998	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr5	116611427	116611428	chr5:116611428:A:G	rs12521940	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr5	116860333	116860334	chr5:116860334:T:C	rs10043907	T	C	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr5	117110693	117110694	chr5:117110694:T:C	rs4537091	T	C	c	Sox3.mouse_HMG_1	6	1	+	1.9232985650259453	-4.722792204602973	GAACAATGCATTTGCTA
chr5	118102307	118102308	chr5:118102308:A:G	rs6859254	A	G	A	Sox3.mouse_HMG_1	4	1	+	1.4325739100505452	-5.379751181926692	GAGCAAAGCAATTGTAT
chr5	118342429	118342430	chr5:118342430:G:A	rs4921018	G	A	G	Sox3.mouse_HMG_1	8	1	-	5.367213900944947	5.679953125855489	GAACAATTCTAATGTAA
chr5	118579367	118579368	chr5:118579368:A:C	rs750568	A	C	A	Sox3.mouse_HMG_1	7	1	+	6.310605586006498	1.1859837708590368	AGAGAATAATAGTGTTT
chr5	119388545	119388546	chr5:119388546:A:C	rs12514023	A	C	A	Sox3.mouse_HMG_1	2	1	+	3.602529654124288	-2.8228052255970257	AGACAATAAAAATGTAG
chr5	119469919	119469920	chr5:119469920:C:A	rs257974	C	A	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr5	119596216	119596217	chr5:119596217:C:T	rs1428432	C	T	T	Sox3.mouse_HMG_1	9	1	+	0.759008098679755	0.7233019737951872	GAACAATTGCTGGGTTT
chr5	119681212	119681213	chr5:119681213:T:C	rs874886	T	C	T	Sox3.mouse_HMG_1	9	1	+	12.443783727115084	12.479489851999654	TAACAATGATATTGTCA
chr5	119987128	119987129	chr5:119987129:G:A	rs4540207	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr5	120056168	120056169	chr5:120056169:C:T	rs58938209	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr5	120139868	120139869	chr5:120139869:T:C	rs17146162	T	C	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr5	120227128	120227129	chr5:120227129:C:T	rs12719272	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr5	120456696	120456697	chr5:120456697:G:T	rs1503929	G	T	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr5	120803302	120803303	chr5:120803303:T:A	rs193290396	T	A	T	Sox3.mouse_HMG_1	6	1	+	11.243395798256364	4.334940764159956	AAACAATGAAATTCTTA
chr5	121622993	121622994	chr5:121622994:T:C	rs7700795	T	C	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr5	121949786	121949787	chr5:121949787:C:A	rs12109159	C	A	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr5	122313029	122313030	chr5:122313030:C:G	rs557512005	C	G	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr5	122313139	122313140	chr5:122313140:G:C	rs73279370	G	C	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr5	123045429	123045430	chr5:123045430:G:T	rs780635350	G	T	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr5	123146486	123146487	chr5:123146487:C:A	rs458158	C	A	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr5	123385558	123385559	chr5:123385559:G:T	rs7713551	G	T	G	Sox3.mouse_HMG_1	8	1	-	6.222952265289677	7.355512728668753	AGATAATTCTATTGTTG
chr5	123693252	123693253	chr5:123693253:G:A	rs35021830	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr5	123859348	123859349	chr5:123859349:G:A	rs167931	G	A	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr5	124154931	124154932	chr5:124154932:C:T	rs12108901	C	T	C	Sox3.mouse_HMG_1	8	1	+	6.367044918602076	6.67978414351262	AAACAATGCAATTGAGA
chr5	124154934	124154935	chr5:124154935:T:G	rs1457687	T	G	g	Sox3.mouse_HMG_1	11	1	+	6.367044918602076	4.239066251741196	AAACAATGCAATTGAGA
chr5	124679017	124679018	chr5:124679018:G:A	rs12655557	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr5	124736376	124736377	chr5:124736377:A:G	rs72781244	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr5	124773948	124773949	chr5:124773949:C:T	rs75498208	C	T	C	Sox3.mouse_HMG_1	13	1	-	2.7324183132539197	-3.375687476771996	TTACATTAGCAGTGTTT
chr5	124792923	124792924	chr5:124792924:A:T	rs77371656	A	T	A	Sox3.mouse_HMG_1	7	1	-	2.9161083530290615	3.9575871379939054	AAAAAATTGTCTTGTTA
chr5	124908962	124908963	chr5:124908963:A:G	rs965422732	A	G	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr5	125350089	125350090	chr5:125350090:A:C	rs2678200	A	C	A	Sox3.mouse_HMG_1	15	1	-	3.9094715361078927	-0.6569473214981423	GCACAATAAAATTTTTG
chr5	125434161	125434162	chr5:125434162:T:C	rs17152760	T	C	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr5	125511014	125511015	chr5:125511015:C:T	rs2061328	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr5	125970592	125970593	chr5:125970593:T:A	rs72795065	T	A	T	Sox3.mouse_HMG_1	9	1	+	6.82739195439278	5.409453692448249	AAACAATTCTATTTTCT
chr5	126138524	126138525	chr5:126138525:T:C	rs3860125	T	C	T	Sox3.mouse_HMG_1	16	1	-	2.275892004207763	2.70972344892887	AAAGAACAGAATTGTTA
chr5	126274511	126274512	chr5:126274512:A:C	rs74928035	A	C	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr5	126374216	126374217	chr5:126374217:T:C	rs10078989	T	C	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr5	126692738	126692739	chr5:126692739:A:T	rs35441109	A	T	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr5	127601531	127601532	chr5:127601532:C:T	rs114741290	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr5	127908046	127908047	chr5:127908047:G:A	rs13161619	G	A	G	Sox3.mouse_HMG_1	3	1	-	4.956051355667592	-1.026724762466728	AAACCATTAAATTGTGG
chr5	127995921	127995922	chr5:127995922:C:G	rs10068883	C	G	G	Sox3.mouse_HMG_1	11	1	+	2.4926305169227665	6.42210795902224	CAACAATTAAACTATTG
chr5	128225440	128225441	chr5:128225441:G:C	rs36712	G	C	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr5	128442234	128442235	chr5:128442235:A:G	rs17697995	A	G	A	Sox3.mouse_HMG_1	0	1	+	2.262433060433579	0.8896163949720396	ATACAATGATGTTCTTT
chr5	128736478	128736479	chr5:128736479:C:T	rs247178	C	T	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr5	129653553	129653554	chr5:129653554:G:A	rs548472822	G	A	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr5	130126877	130126878	chr5:130126878:C:G	rs77267467	C	G	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr5	130136028	130136029	chr5:130136029:G:A	rs4836493	G	A	g	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr5	131065432	131065433	chr5:131065433:C:T	rs72803718	C	T	C	Sox3.mouse_HMG_1	0	1	-	1.5870858990279124	2.9599025644894508	GAACCATATCAGTGCTG
chr5	131657430	131657431	chr5:131657431:A:G	rs31584	A	G	g	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr5	132019961	132019962	chr5:132019962:G:A	rs1017884808	G	A	G	Sox3.mouse_HMG_1	11	1	+	3.685663802153446	-0.04881362489230123	AAACATTGCAAGTGTAA
chr5	132387133	132387134	chr5:132387134:A:G	rs77300588	A	G	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr5	132589588	132589589	chr5:132589589:T:A	rs114648433	T	A	T	Sox3.mouse_HMG_1	2	1	-	7.8967160482933965	1.994629312336634	AAACAATTTAAGTTTTT
chr5	132873617	132873618	chr5:132873618:A:G	rs7723970	A	G	A	Sox3.mouse_HMG_1	9	1	+	6.913447503814077	2.3304478840927465	TAACAATGCAAGAGTTG
chr5	132884743	132884744	chr5:132884744:A:C	rs10491278	A	C	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr5	132972260	132972261	chr5:132972261:C:T	rs12234077	C	T	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr5	133020150	133020151	chr5:133020151:T:C	rs11242132	T	C	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr5	133020191	133020192	chr5:133020192:C:T	rs11743034	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr5	133397020	133397021	chr5:133397021:G:A	rs17166677	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr5	133423631	133423632	chr5:133423632:C:T	rs29545	C	T	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr5	133475636	133475637	chr5:133475637:C:G	rs165994	C	G	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr5	134053986	134053987	chr5:134053987:A:G	rs2546347	A	G	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr5	134053989	134053990	chr5:134053990:C:T	rs2546348	C	T	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr5	134125999	134126000	chr5:134126000:A:G	rs3972624	A	G	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr5	134175570	134175571	chr5:134175571:T:C	rs73791516	T	C	T	Sox3.mouse_HMG_1	5	1	-	3.6930058897729072	-3.033127587529548	AATCAACTGCATTGTTA
chr5	134284512	134284513	chr5:134284513:T:C	rs326610	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.6557130327502034	-5.070420444552251	TATCAATGACACTGTGT
chr5	134482866	134482867	chr5:134482867:T:C	rs74759031	T	C	t	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr5	134927985	134927986	chr5:134927986:G:A	rs75590331	G	A	-	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr5	135068699	135068700	chr5:135068700:G:A	rs10065996	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr5	135393831	135393832	chr5:135393832:T:C	rs779562	T	C	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr5	135404008	135404009	chr5:135404009:C:A	rs139392213	C	A	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr5	135474644	135474645	chr5:135474645:G:A	rs251557	G	A	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr5	135809726	135809727	chr5:135809727:C:T	rs62364726	C	T	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr5	137111884	137111885	chr5:137111885:A:C	rs1859346	A	C	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr5	137270395	137270396	chr5:137270396:T:C	rs1434644	T	C	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr5	137622990	137622991	chr5:137622991:T:C	rs564132519	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr5	138101535	138101536	chr5:138101536:A:G	rs4835767	A	G	A	Sox3.mouse_HMG_1	15	1	-	6.357862640809058	2.055360843013575	CAGCAATTGCATTGATT
chr5	138955443	138955444	chr5:138955444:G:A	rs564332339	G	A	G	Sox3.mouse_HMG_1	8	1	+	1.9970102079779957	3.023423682988632	CAAAAATGGAAGTGATT
chr5	139049977	139049978	chr5:139049978:A:G	rs541418131	A	G	A	Sox3.mouse_HMG_1	14	1	-	5.042876240712098	-1.0670146745366094	CTACAATGACAGAGTTG
chr5	139780269	139780270	chr5:139780270:G:A	rs72794884	G	A	G	Sox3.mouse_HMG_1	11	1	+	3.6293774307135416	-0.10509999633220529	TTACAATGACAGGGTTG
chr5	139793756	139793757	chr5:139793757:C:A	rs75461295	C	A	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr5	140073307	140073308	chr5:140073308:G:A	rs187178000	G	A	G	Sox3.mouse_HMG_1	7	1	+	6.504698585970756	6.008628266193447	GAACAATGAAATAGATT
chr5	140273622	140273623	chr5:140273623:G:A	rs17118785	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr5	141298776	141298777	chr5:141298777:T:C	rs56756237	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr5	141477654	141477655	chr5:141477655:T:C	rs138608867	T	C	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr5	141557457	141557458	chr5:141557458:C:T	rs72792304	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr5	141564700	141564701	chr5:141564701:C:T	rs143377827	C	T	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr5	141696404	141696405	chr5:141696405:A:T	rs74957209	A	T	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr5	141701329	141701330	chr5:141701330:T:C	rs349128	T	C	C	Sox3.mouse_HMG_1	16	1	+	2.0527181187603	-1.5490785468606822	AAACAATAGCCTGGTAT
chr5	141701933	141701934	chr5:141701934:C:T	rs78010744	C	T	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr5	142144466	142144467	chr5:142144467:T:C	rs3850576	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr5	142243372	142243373	chr5:142243373:T:G	rs12658011	T	G	T	Sox3.mouse_HMG_1	3	1	+	4.325271574720646	3.4010126731973136	AAATAATGACAGTTTTA
chr5	142426787	142426788	chr5:142426788:T:A	rs35723035	T	A	T	Sox3.mouse_HMG_1	11	1	+	4.977539704491246	-0.8849163894153812	AAACAAAAAAATTTTTT
chr5	142500297	142500298	chr5:142500298:A:G	rs249729	A	G	A	Sox3.mouse_HMG_1	11	1	-	5.248491682440343	-0.8089644265200095	CAGCAATAGGATTGTTA
chr5	142568256	142568257	chr5:142568257:T:C	rs33984	T	C	C	Sox3.mouse_HMG_1	6	1	+	7.54601673552339	0.8999259658944703	AACCAATTCTAGTGTTA
chr5	142888685	142888686	chr5:142888686:T:C	rs774958166	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr5	143217378	143217379	chr5:143217379:T:G	rs148105567	T	G	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr5	143248646	143248647	chr5:143248647:C:T	rs139068600	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr5	143447226	143447227	chr5:143447227:G:A	rs4128753	G	A	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr5	143447251	143447252	chr5:143447252:T:G	rs4295416	T	G	T	Sox3.mouse_HMG_1	6	1	+	1.4784964831135472	-5.429958550982863	CAACAGTGACATTCTCT
chr5	143573485	143573486	chr5:143573486:C:T	rs56259167	C	T	c	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr5	143657294	143657295	chr5:143657295:A:C	rs1427864	A	C	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr5	143667933	143667934	chr5:143667934:C:T	rs62374564	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr5	143757247	143757248	chr5:143757248:T:C	rs114604128	T	C	T	Sox3.mouse_HMG_1	12	1	+	2.8531197955587975	-3.3533457896590546	ACACAATCATACTGTTT
chr5	143965094	143965095	chr5:143965095:G:A	rs312571	G	A	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr5	144035177	144035178	chr5:144035178:C:T	rs316056	C	T	T	Sox3.mouse_HMG_1	2	1	-	1.3369114811295746	5.744846460110037	CAGCAATGACTCTGTTT
chr5	144134454	144134455	chr5:144134455:A:T	rs145918900	A	T	A	Sox3.mouse_HMG_1	12	1	-	11.606289697904066	6.018097624270952	GAACAATGCTACTGTTT
chr5	144208288	144208289	chr5:144208289:G:A	rs146717397	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr5	145180056	145180057	chr5:145180057:C:A	rs6580348	C	A	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr5	145203496	145203497	chr5:145203497:A:T	rs35282350	A	T	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr5	145428276	145428277	chr5:145428277:T:G	rs11958271	T	G	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr5	145510346	145510347	chr5:145510347:A:G	rs34970219	A	G	G	Sox3.mouse_HMG_1	12	1	-	2.63320721388286	-3.5732583713349926	AAACAATGTCAATGGAG
chr5	145831084	145831085	chr5:145831085:A:G	rs11742313	A	G	A	Sox3.mouse_HMG_1	8	1	+	4.532761937004602	3.5063484619939658	GAAAAATAAAAGTGTAT
chr5	146028524	146028525	chr5:146028525:C:T	rs13181933	C	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr5	146126536	146126537	chr5:146126537:G:A	rs11540216	G	A	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr5	146169370	146169371	chr5:146169371:A:G	rs75163996	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr5	146180028	146180029	chr5:146180029:T:C	rs33914983	T	C	C	Sox3.mouse_HMG_1	12	1	+	2.6180554429565723	-3.588410142261279	GAACTTTTAAATTGTTT
chr5	146188800	146188801	chr5:146188801:T:A	rs17104298	T	A	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr5	146608011	146608012	chr5:146608012:A:G	rs56791426	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr5	146657287	146657288	chr5:146657288:T:C	rs461244	T	C	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr5	146833349	146833350	chr5:146833350:T:A	rs249900	T	A	T	Sox3.mouse_HMG_1	9	1	-	4.892808129537429	6.3107463914819615	TGACAATGAAATTATTA
chr5	146834311	146834312	chr5:146834312:T:C	chr5:146834312:T:C	T	C	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr5	146834315	146834316	chr5:146834316:T:C	chr5:146834316:T:C	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr5	147396685	147396686	chr5:147396686:A:T	rs17484444	A	T	A	Sox3.mouse_HMG_1	14	1	-	0.9971721420478588	-4.288305206647233	AAACCAGGGAAGTGTTG
chr5	147780867	147780868	chr5:147780868:G:A	rs12655202	G	A	G	Sox3.mouse_HMG_1	13	1	+	12.418852181507878	6.3107463914819615	TGACAATGATATTGTTA
chr5	147857650	147857651	chr5:147857651:T:C	rs150243556	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr5	147909587	147909588	chr5:147909588:G:A	rs60307992	G	A	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr5	148731112	148731113	chr5:148731113:T:C	rs367936739	T	C	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr5	148731142	148731143	chr5:148731143:T:G	rs138468658	T	G	T	Sox3.mouse_HMG_1	4	1	-	5.8570531420359675	-0.8682605729516393	CAACAATGTAATAGTAA
chr5	148768858	148768859	chr5:148768859:T:G	rs2082398	T	G	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr5	148955679	148955680	chr5:148955680:T:C	rs4705298	T	C	T	Sox3.mouse_HMG_1	8	1	-	2.7591084399166017	1.732694964905966	TATCAATGACAGTGGTG
chr5	149073162	149073163	chr5:149073163:T:C	rs417413	T	C	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr5	149262717	149262718	chr5:149262718:C:T	rs6871290	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr5	149373037	149373038	chr5:149373038:G:A	rs432132	G	A	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr5	149373041	149373042	chr5:149373042:T:C	rs374806	T	C	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr5	149419936	149419937	chr5:149419937:T:C	rs34670039	T	C	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr5	149576263	149576264	chr5:149576264:A:C	rs74294135	A	C	A	Sox3.mouse_HMG_1	5	1	+	6.946202932393401	0.13305807810131642	AAACAAAGAAATTGTAA
chr5	149611300	149611301	chr5:149611301:A:T	rs376379550	A	T	A	Sox3.mouse_HMG_1	10	1	+	2.9474448258927093	-3.8654901532743042	GAATAATAGCAGTGATG
chr5	149611306	149611307	chr5:149611307:G:T	rs6873616	G	T	T	Sox3.mouse_HMG_1	16	1	+	2.9474448258927093	3.913296466649822	GAATAATAGCAGTGATG
chr5	149872021	149872022	chr5:149872022:T:C	rs9885044	T	C	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr5	150905774	150905775	chr5:150905775:G:A	rs73284175	G	A	g	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr5	151283999	151284000	chr5:151284000:T:A	rs10043175	T	A	A	Sox3.mouse_HMG_1	6	1	+	3.005288885048012	-3.9031661490483973	GAACAGTTCCAGTGTCT
chr5	151284003	151284004	chr5:151284004:A:C	rs1347147	A	C	C	Sox3.mouse_HMG_1	10	1	+	3.005288885048012	-3.5593665695332497	GAACAGTTCCAGTGTCT
chr5	151313495	151313496	chr5:151313496:G:A	rs78641723	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr5	151363692	151363693	chr5:151363693:A:G	rs150872180	A	G	A	Sox3.mouse_HMG_1	10	1	+	3.6544993812833813	-3.253745777687957	AAACAATTCAACTTTTT
chr5	151447013	151447014	chr5:151447014:C:A	rs79760523	C	A	C	Sox3.mouse_HMG_1	10	1	+	3.1938598933023696	9.75851534788363	AAACAATGATCTTCTCT
chr5	151452427	151452428	chr5:151452428:A:G	rs918421	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr5	151523598	151523599	chr5:151523599:G:A	rs376564132	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr5	151566369	151566370	chr5:151566370:C:T	rs3734058	C	T	C	Sox3.mouse_HMG_1	12	1	-	2.55307883902679	3.533014836061301	AGACAATGGCAGGGTTC
chr5	151611109	151611110	chr5:151611110:G:A	rs79877348	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr5	152324445	152324446	chr5:152324446:G:A	rs72806385	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr5	152431545	152431546	chr5:152431546:T:C	rs4958542	T	C	C	Sox3.mouse_HMG_1	4	1	-	5.264613451863049	-1.5477116401141864	AGACAATACACTTGTTG
chr5	153627168	153627169	chr5:153627169:T:C	rs76309268	T	C	T	Sox3.mouse_HMG_1	14	1	+	3.2755015943301626	-2.8343893209185445	AAACAATAACAATATAG
chr5	153628477	153628478	chr5:153628478:C:T	rs74680387	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr5	153657940	153657941	chr5:153657941:C:T	rs76859227	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr5	153768287	153768288	chr5:153768288:C:T	rs4576205	C	T	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr5	153780865	153780866	chr5:153780866:G:A	rs56968997	G	A	G	Sox3.mouse_HMG_1	7	1	-	3.838613835229353	7.921756865411972	TAACAATCGTAGTGTGG
chr5	154074891	154074892	chr5:154074892:G:C	rs13154464	G	C	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr5	154147317	154147318	chr5:154147318:G:T	rs815615	G	T	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr5	154198439	154198440	chr5:154198440:G:A	rs150241314	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr5	154198957	154198958	chr5:154198958:C:T	rs10515706	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr5	154243207	154243208	chr5:154243208:T:G	rs2122895	T	G	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr5	154243251	154243252	chr5:154243252:C:T	rs2122896	C	T	c	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr5	154279051	154279052	chr5:154279052:T:C	rs72808634	T	C	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr5	154627677	154627678	chr5:154627678:A:G	rs56349590	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr5	155481239	155481240	chr5:155481240:G:A	rs28403074	G	A	G	Sox3.mouse_HMG_1	9	1	-	4.402108328310882	4.366402203426312	AAACAATTCCAGTATAA
chr5	155665802	155665803	chr5:155665803:A:G	rs17118190	A	G	G	Sox3.mouse_HMG_1	15	1	+	4.137669447313199	3.068094211499635	CAACAATGGCAGTGGAA
chr5	156302879	156302880	chr5:156302880:C:T	rs1580927	C	T	c	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr5	156328243	156328244	chr5:156328244:G:A	rs74755325	G	A	G	Sox3.mouse_HMG_1	9	1	-	3.8079148679214865	3.7722087430369187	ATGCAATGACATTGTAC
chr5	156473482	156473483	chr5:156473483:A:G	rs6891087	A	G	A	Sox3.mouse_HMG_1	12	1	-	2.439832391808516	-3.766633193409336	AAACAATTCATATGTTG
chr5	156590074	156590075	chr5:156590075:A:G	rs3797574	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr5	156590078	156590079	chr5:156590079:A:G	rs157292	A	G	G	Sox3.mouse_HMG_1	15	1	-	4.255848047695054	-0.046653750100428715	TAACAATGCCATTCATA
chr5	156735640	156735641	chr5:156735641:G:A	rs76691977	G	A	g	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr5	156735647	156735648	chr5:156735648:T:C	rs116543869	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr5	156799538	156799539	chr5:156799539:G:A	rs2436424	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr5	157195233	157195234	chr5:157195234:C:T	rs163428	C	T	C	Sox3.mouse_HMG_1	7	1	+	1.9593339458291956	6.042476976011812	AAACAAGCTCATTGTAA
chr5	157379984	157379985	chr5:157379985:G:A	rs11744003	G	A	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr5	157567022	157567023	chr5:157567023:C:T	rs11465254	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr5	157691229	157691230	chr5:157691230:T:C	rs73815357	T	C	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr5	157691272	157691273	chr5:157691273:T:C	rs73815359	T	C	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr5	158000740	158000741	chr5:158000741:T:C	rs7728299	T	C	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr5	158215927	158215928	chr5:158215928:A:G	rs115783907	A	G	A	Sox3.mouse_HMG_1	6	1	-	5.024418392531981	-1.621672377096938	CCACAATAGCAGTGTCT
chr5	158546217	158546218	chr5:158546218:A:G	rs76051606	A	G	A	Sox3.mouse_HMG_1	2	1	+	4.0970359403266325	-0.3108990386538278	GAACAATTACAATTTTG
chr5	158740183	158740184	chr5:158740184:A:G	rs7732733	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr5	158967913	158967914	chr5:158967914:A:G	rs775352939	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr5	159061697	159061698	chr5:159061698:C:T	chr5:159061698:C:T	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr5	159325261	159325262	chr5:159325262:C:T	rs3181217	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr5	159517076	159517077	chr5:159517077:A:G	rs11959014	A	G	A	Sox3.mouse_HMG_1	6	1	-	9.904883720899571	3.258792951270651	TGACAATGTTAGTGTTG
chr5	159917998	159917999	chr5:159917999:A:C	rs3730285	A	C	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr5	160073734	160073735	chr5:160073735:G:C	rs563719179	G	C	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr5	160199014	160199015	chr5:160199015:C:T	rs116602704	C	T	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr5	160484216	160484217	chr5:160484217:A:G	rs2910163	A	G	A	Sox3.mouse_HMG_1	9	1	-	5.855836747074779	5.891542871959348	AGACCATGCTAGTGTTT
chr5	160852272	160852273	chr5:160852273:C:T	rs6868857	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr5	160852274	160852275	chr5:160852275:A:G	rs6889594	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr5	160900991	160900992	chr5:160900992:G:A	rs1516652	G	A	g	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr5	160919830	160919831	chr5:160919831:C:T	rs10515817	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr5	161407210	161407211	chr5:161407211:G:A	rs1422950	G	A	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr5	161407253	161407254	chr5:161407254:G:A	rs1422951	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr5	161483652	161483653	chr5:161483653:T:C	rs2964772	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr5	161483690	161483691	chr5:161483691:G:A	rs74707285	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr5	162002213	162002214	chr5:162002214:C:T	rs12152897	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr5	162002269	162002270	chr5:162002270:G:A	rs12520157	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr5	162096716	162096717	chr5:162096717:A:G	rs2910223	A	G	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr5	162248056	162248057	chr5:162248057:A:G	rs10043496	A	G	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr5	162818069	162818070	chr5:162818070:A:G	rs17060894	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr5	162960253	162960254	chr5:162960254:A:G	rs17061099	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr5	163372988	163372989	chr5:163372989:T:C	rs4869059	T	C	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr5	163862234	163862235	chr5:163862235:C:G	rs10043091	C	G	G	Sox3.mouse_HMG_1	3	1	+	1.3254298150134356	-5.581605204644218	AAACATGAACATTGTGT
chr5	163964707	163964708	chr5:163964708:G:C	rs6556723	G	C	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr5	164070299	164070300	chr5:164070300:G:A	rs978114	G	A	A	Sox3.mouse_HMG_1	13	1	+	4.6399311756748824	-1.4681746143510335	CAACAATTACTGTGTAT
chr5	164191735	164191736	chr5:164191736:T:C	rs150212594	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.9125137734041764	-3.813619703898279	CAACAATACAATTTATG
chr5	164191748	164191749	chr5:164191749:A:G	rs184369710	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr5	165030431	165030432	chr5:165030432:A:T	rs4327610	A	T	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr5	165219582	165219583	chr5:165219583:C:T	rs78861930	C	T	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr5	166002823	166002824	chr5:166002824:A:G	rs6868659	A	G	G	Sox3.mouse_HMG_1	2	1	+	12.030432136748312	7.622497157767854	AAACAATGCAATAGTTT
chr5	166363732	166363733	chr5:166363733:C:T	rs2047586	C	T	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr5	166371315	166371316	chr5:166371316:G:A	rs17066756	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr5	167405856	167405857	chr5:167405857:G:A	rs66716755	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr5	167424188	167424189	chr5:167424189:A:G	rs6871562	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr5	167639731	167639732	chr5:167639732:T:A	rs76536823	T	A	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr5	167764127	167764128	chr5:167764128:A:G	rs115890356	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr5	167843003	167843004	chr5:167843004:C:A	rs17434346	C	A	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr5	167861678	167861679	chr5:167861679:G:A	rs1363206	G	A	G	Sox3.mouse_HMG_1	9	1	-	3.9583972590915546	3.922691134206986	ATAAAATTACAGTGTTG
chr5	167910087	167910088	chr5:167910088:A:G	rs1433682402	A	G	a	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr5	167946126	167946127	chr5:167946127:A:T	rs1050878876	A	T	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr5	168147616	168147617	chr5:168147617:G:C	rs10077866	G	C	G	Sox3.mouse_HMG_1	15	1	-	4.358087893554313	4.094170833743761	AAGCAATGGCATTGCCT
chr5	168156299	168156300	chr5:168156300:A:G	rs4580796	A	G	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr5	168291054	168291055	chr5:168291055:T:A	rs72838318	T	A	T	Sox3.mouse_HMG_1	10	1	-	5.258720089301278	-1.5542148898657355	TAGTAATGCCATTGTTA
chr5	168513889	168513890	chr5:168513890:G:A	rs7704557	G	A	A	Sox3.mouse_HMG_1	3	1	-	3.9382484450242994	-2.044527673110022	TAACAAAGACATTTTTG
chr5	168530946	168530947	chr5:168530947:A:G	rs56664166	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr5	168532301	168532302	chr5:168532302:C:G	rs244895	C	G	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr5	168797062	168797063	chr5:168797063:C:T	rs143652220	C	T	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr5	168836797	168836798	chr5:168836798:A:G	rs184608787	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr5	168848605	168848606	chr5:168848606:G:A	rs114372095	G	A	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr5	169183149	169183150	chr5:169183150:G:A	rs11740487	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr5	169183181	169183182	chr5:169183182:T:C	rs297876	T	C	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr5	169548426	169548427	chr5:169548427:C:T	rs17071370	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr5	169728625	169728626	chr5:169728626:A:T	rs73318255	A	T	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr5	170509409	170509410	chr5:170509410:A:T	rs4867608	A	T	A	Sox3.mouse_HMG_1	15	1	-	2.1086430046303084	-1.3882006171621626	AAACAATCCCACTGATT
chr5	170654707	170654708	chr5:170654708:A:G	rs17650276	A	G	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr5	170833380	170833381	chr5:170833381:T:A	rs1422162	T	A	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr5	171611658	171611659	chr5:171611659:G:A	rs6861801	G	A	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr5	171710732	171710733	chr5:171710733:G:A	rs1897549	G	A	G	Sox3.mouse_HMG_1	7	1	+	1.5362508863095385	1.0401805665322277	GGGCAATGGCATGGTTG
chr5	171847220	171847221	chr5:171847221:T:C	rs702097	T	C	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr5	171916570	171916571	chr5:171916571:A:C	rs77310504	A	C	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr5	172113638	172113639	chr5:172113639:G:A	rs74324375	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr5	172358287	172358288	chr5:172358288:A:G	rs17702964	A	G	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr5	172559310	172559311	chr5:172559311:C:T	rs142962816	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr5	172564415	172564416	chr5:172564416:A:G	rs7734791	A	G	G	Sox3.mouse_HMG_1	8	1	-	2.7743810098711927	2.4616417849606504	AAACAAGTTGAGTGTTT
chr5	172677624	172677625	chr5:172677625:T:C	rs4867685	T	C	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr5	172742249	172742250	chr5:172742250:A:C	rs72809976	A	C	a	Sox3.mouse_HMG_1	12	1	-	1.768213718891822	-4.799914351775802	AAACCACTACAGTGTTA
chr5	172742253	172742254	chr5:172742254:T:C	rs505120	T	C	t	Sox3.mouse_HMG_1	8	1	-	1.768213718891822	0.7418002438811855	AAACCACTACAGTGTTA
chr5	172789775	172789776	chr5:172789776:A:C	rs60288521	A	C	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr5	172911368	172911369	chr5:172911369:A:C	rs187927244	A	C	A	Sox3.mouse_HMG_1	5	1	+	2.9621240986984168	-3.8510207555936677	GAACAAGGAAATTCTTA
chr5	172979332	172979333	chr5:172979333:A:C	rs508161	A	C	a	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr5	173052334	173052335	chr5:173052335:G:T	chr5:173052335:G:T	G	T	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr5	173248030	173248031	chr5:173248031:A:G	rs62378332	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr5	173335799	173335800	chr5:173335800:C:T	rs12520511	C	T	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr5	173409272	173409273	chr5:173409273:A:G	rs35470281	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr5	173824774	173824775	chr5:173824775:A:G	rs77999101	A	G	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr5	173833641	173833642	chr5:173833642:A:G	rs360014	A	G	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr5	173834822	173834823	chr5:173834823:G:T	rs369099468	G	T	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr5	173943484	173943485	chr5:173943485:A:G	rs59134908	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.754990992794223	-4.971142484508232	AAACAATACATGTGGTT
chr5	174355404	174355405	chr5:174355405:C:T	rs75437378	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr5	174355432	174355433	chr5:174355433:T:C	rs2964111	T	C	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr5	174358221	174358222	chr5:174358222:C:A	rs6556126	C	A	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr5	174504147	174504148	chr5:174504148:C:T	rs354990	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr5	175480395	175480396	chr5:175480396:G:A	rs62386247	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr5	176349049	176349050	chr5:176349050:C:T	rs10516135	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr5	176672701	176672702	chr5:176672702:A:T	rs149879305	A	T	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr5	178177133	178177134	chr5:178177134:T:C	rs7448252	T	C	T	Sox3.mouse_HMG_1	4	1	-	12.04850957558826	5.2361844836110265	AAACAATAACAGTGTGG
chr5	178195282	178195283	chr5:178195283:G:C	rs2913814	G	C	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr5	178765805	178765806	chr5:178765806:T:C	rs7703542	T	C	N	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr5	179211558	179211559	chr5:179211559:T:G	rs173072	T	G	G	Sox3.mouse_HMG_1	3	1	+	2.63232633513178	1.7080674336084478	AAATAATGACACTGTGG
chr5	179342516	179342517	chr5:179342517:A:G	rs26814	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr5	179342525	179342526	chr5:179342526:A:G	rs75213418	A	G	A	Sox3.mouse_HMG_1	8	1	+	4.743166122289071	3.716752647278435	AAAGAATGACAGTGGTT
chr5	179622327	179622328	chr5:179622328:G:A	rs4563584	G	A	.	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr5	180070747	180070748	chr5:180070748:T:C	rs4700859	T	C	C	Sox3.mouse_HMG_1	8	1	-	5.110622381864639	4.084208906854003	GAACAAGGACTTTGTTT
chr5	180181359	180181360	chr5:180181360:T:C	rs11749727	T	C	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr5	180333012	180333013	chr5:180333013:C:T	rs7727934	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr5	180811307	180811308	chr5:180811308:G:T	rs75268547	G	T	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr6	413535	413536	chr6:413536:G:A	rs34069958	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr6	812135	812136	chr6:812136:A:G	rs9505233	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr6	1110003	1110004	chr6:1110004:T:C	rs75189236	T	C	T	Sox3.mouse_HMG_1	7	1	-	2.4355493466786253	2.931619666455936	AAACTATAGTAGTTTTA
chr6	1198045	1198046	chr6:1198046:T:C	rs463443	T	C	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	1316215	1316216	chr6:1316216:G:A	rs2006798	G	A	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr6	1414449	1414450	chr6:1414450:G:A	rs7742720	G	A	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr6	1449975	1449976	chr6:1449976:A:G	rs2816242	A	G	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr6	1514011	1514012	chr6:1514012:G:A	rs12211247	G	A	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	1519504	1519505	chr6:1519505:T:C	rs57756311	T	C	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr6	1519510	1519511	chr6:1519511:A:T	rs57770600	A	T	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	1671132	1671133	chr6:1671133:A:G	rs763112092	A	G	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr6	1710894	1710895	chr6:1710895:T:C	rs17134216	T	C	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr6	1862550	1862551	chr6:1862551:T:C	rs183290724	T	C	T	Sox3.mouse_HMG_1	10	1	-	4.670167594292256	-2.2380775646790827	GAACAGTTATAATGTTT
chr6	1973906	1973907	chr6:1973907:G:A	rs368265331	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr6	2054749	2054750	chr6:2054750:A:T	rs78906641	A	T	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr6	2522573	2522574	chr6:2522574:A:G	rs11242782	A	G	G	Sox3.mouse_HMG_1	14	1	-	2.9691208415171317	-3.1407700737315754	AAGGAATTTTAGTGTTA
chr6	2900119	2900120	chr6:2900120:T:G	rs7769332	T	G	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr6	2989974	2989975	chr6:2989975:C:T	rs761102638	C	T	c	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr6	2990002	2990003	chr6:2990003:T:A	rs924988087	T	A	t	Sox3.mouse_HMG_1	5	1	-	3.2243199315249784	-3.6841351025714326	AAAGAATGCCTGTGTTT
chr6	3219379	3219380	chr6:3219380:A:C	rs9503464	A	C	a	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr6	3410141	3410142	chr6:3410142:C:T	rs78994264	C	T	C	Sox3.mouse_HMG_1	8	1	-	4.341243161766858	5.367656636777493	TAGCAAAAGTATTGTTG
chr6	3607903	3607904	chr6:3607904:G:A	rs72845649	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr6	3686184	3686185	chr6:3686185:G:T	rs7749290	G	T	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr6	3743380	3743381	chr6:3743381:C:T	rs144414546	C	T	C	Sox3.mouse_HMG_1	13	1	-	6.676310314337339	0.5682045243114227	AAACAATATAAATGTAA
chr6	3811312	3811313	chr6:3811313:C:T	rs76780062	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr6	4008720	4008721	chr6:4008721:A:C	rs73347781	A	C	A	Sox3.mouse_HMG_1	4	1	+	2.3620190986993155	-4.3632946162882895	GAACAATGCAACTGGTA
chr6	4019181	4019182	chr6:4019182:C:G	rs6597024	C	G	G	Sox3.mouse_HMG_1	13	1	-	1.5886817090378256	-4.519424080988091	GAACAAACCAAGTGTTT
chr6	4562231	4562232	chr6:4562232:A:G	rs435655	A	G	a	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr6	4810412	4810413	chr6:4810413:A:G	rs9504258	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr6	5013740	5013741	chr6:5013741:C:T	rs60756944	C	T	.	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr6	5089043	5089044	chr6:5089044:A:G	rs463951	A	G	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr6	5102393	5102394	chr6:5102394:T:C	rs461144	T	C	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr6	5190678	5190679	chr6:5190679:G:A	rs73363048	G	A	G	Sox3.mouse_HMG_1	6	1	-	1.393316664661591	8.039407434290512	TAACAACGGCAGAGTTA
chr6	5520232	5520233	chr6:5520233:C:G	rs73356368	C	G	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr6	5556463	5556464	chr6:5556464:C:T	rs9504434	C	T	T	Sox3.mouse_HMG_1	11	1	-	4.178634791149109	0.4441573641033613	ATACAGTATCAGTGTTG
chr6	6553144	6553145	chr6:6553145:C:G	rs479251	C	G	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr6	6614100	6614101	chr6:6614101:C:A	rs6925692	C	A	C	Sox3.mouse_HMG_1	9	1	+	1.572652116267275	0.11900772943817473	GAAGAAAATCAGTGTTT
chr6	6655659	6655660	chr6:6655660:A:G	rs3765289	A	G	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr6	6662705	6662706	chr6:6662706:A:G	rs201011	A	G	G	Sox3.mouse_HMG_1	12	1	-	2.743864775532113	-3.4626008096857386	AAGCAATGATAGTGGAG
chr6	6820713	6820714	chr6:6820714:A:G	rs59750014	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr6	6820746	6820747	chr6:6820747:C:T	rs9378480	C	T	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr6	7438836	7438837	chr6:7438837:G:A	rs11243180	G	A	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr6	7554440	7554441	chr6:7554441:C:T	rs12195095	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr6	7705770	7705771	chr6:7705771:G:A	rs6927500	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr6	8059363	8059364	chr6:8059364:A:G	rs72820105	A	G	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr6	8059373	8059374	chr6:8059374:T:G	rs9505349	T	G	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr6	8230537	8230538	chr6:8230538:T:C	rs17179618	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr6	8239583	8239584	chr6:8239584:T:C	rs113465798	T	C	T	Sox3.mouse_HMG_1	7	1	+	2.7310112605343373	-1.3521317696482802	GAAAGATTGCATTGTTT
chr6	8539439	8539440	chr6:8539440:G:A	rs2015281	G	A	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr6	8557249	8557250	chr6:8557250:A:G	rs230254	A	G	G	Sox3.mouse_HMG_1	5	1	+	3.031367300628589	-3.6947661766738706	AGAGAATTTAAGTGTTT
chr6	8628945	8628946	chr6:8628946:T:A	rs330102	T	A	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr6	8831890	8831891	chr6:8831891:G:A	rs531274446	G	A	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr6	8831926	8831927	chr6:8831927:T:A	rs113655659	T	A	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr6	9131941	9131942	chr6:9131942:G:A	rs77356362	G	A	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr6	9257417	9257418	chr6:9257418:C:T	rs10946404	C	T	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr6	9307851	9307852	chr6:9307852:T:C	rs9295671	T	C	T	Sox3.mouse_HMG_1	5	1	-	3.869530702393766	-2.856602774908691	TAGCTATAACAGTGTTG
chr6	9456978	9456979	chr6:9456979:C:T	rs188930523	C	T	C	Sox3.mouse_HMG_1	3	1	+	2.128400503233065	-3.854375614901257	AAACAATCCCATTGGAA
chr6	9522498	9522499	chr6:9522499:C:T	rs114334891	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr6	9658171	9658172	chr6:9658172:C:T	rs12198882	C	T	T	Sox3.mouse_HMG_1	9	1	+	5.5666223652070075	5.53091624032244	GAGCAATAGCATTTTTG
chr6	9936601	9936602	chr6:9936602:T:C	rs73720672	T	C	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr6	10033092	10033093	chr6:10033093:T:C	rs12209628	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr6	10033121	10033122	chr6:10033122:A:G	rs10484258	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr6	10236676	10236677	chr6:10236677:G:A	rs67529084	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr6	10278880	10278881	chr6:10278881:C:T	rs62405505	C	T	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr6	10460504	10460505	chr6:10460505:T:A	rs9348516	T	A	T	Sox3.mouse_HMG_1	1	1	-	3.3771228021375688	-1.513216124136633	GAACAATACCACTTTTA
chr6	10605517	10605518	chr6:10605518:T:C	rs34819917	T	C	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr6	10722339	10722340	chr6:10722340:C:G	rs12663432	C	G	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr6	11011911	11011912	chr6:11011912:G:A	rs141562809	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr6	11229263	11229264	chr6:11229264:A:G	rs9366751	A	G	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr6	11398888	11398889	chr6:11398889:A:G	rs6912346	A	G	A	Sox3.mouse_HMG_1	12	1	-	3.4722657248409483	-2.7341998603769033	AAGCAATAACAATGTGA
chr6	11398890	11398891	chr6:11398891:T:C	rs6916980	T	C	T	Sox3.mouse_HMG_1	10	1	-	3.4722657248409483	-3.43597943413039	AAGCAATAACAATGTGA
chr6	11433127	11433128	chr6:11433128:T:A	rs6909496	T	A	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr6	11495814	11495815	chr6:11495815:A:C	rs9348895	A	C	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr6	11685729	11685730	chr6:11685730:T:C	rs1416451	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr6	11767602	11767603	chr6:11767603:C:T	rs146574481	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr6	12070028	12070029	chr6:12070029:T:A	chr6:12070029:T:A	T	A	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr6	12200538	12200539	chr6:12200539:A:G	rs1022848	A	G	A	Sox3.mouse_HMG_1	0	1	+	0.9165221650685755	-0.4562945003929622	AAACCATGCTAATGTGG
chr6	12234965	12234966	chr6:12234966:T:C	rs4490660	T	C	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr6	12293903	12293904	chr6:12293904:T:C	rs1800543	T	C	T	Sox3.mouse_HMG_1	15	1	-	5.514417576823792	4.444842341010228	AAACTATATTAGTGTAA
chr6	12409674	12409675	chr6:12409675:T:G	rs12199302	T	G	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr6	12576970	12576971	chr6:12576971:T:C	rs72833769	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr6	12659520	12659521	chr6:12659521:C:A	rs35208883	C	A	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr6	12659525	12659526	chr6:12659526:G:A	rs35447883	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr6	12842330	12842331	chr6:12842331:G:A	rs1537335	G	A	A	Sox3.mouse_HMG_1	11	1	+	0.7322518719189905	-3.0022255551267563	CAACTTTGCCAGTGTTA
chr6	12865416	12865417	chr6:12865417:A:G	rs9296495	A	G	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr6	12865458	12865459	chr6:12865459:T:G	rs56712240	T	G	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr6	13195011	13195012	chr6:13195012:A:G	rs1004598960	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr6	13296164	13296165	chr6:13296165:C:T	rs143508103	C	T	C	Sox3.mouse_HMG_1	11	1	-	2.0527135218025636	-1.6817639052431834	TAACAATGAGCGTGTTA
chr6	13329147	13329148	chr6:13329148:T:A	rs2496135	T	A	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr6	13371526	13371527	chr6:13371527:T:C	rs749905785	T	C	T	Sox3.mouse_HMG_1	15	1	+	3.4461275427116105	-0.8563742550838727	AAACAATTTCAGAGATA
chr6	13421008	13421009	chr6:13421009:A:C	rs16874142	A	C	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr6	13479700	13479701	chr6:13479701:C:A	rs59330070	C	A	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr6	13581854	13581855	chr6:13581855:T:C	rs192200464	T	C	T	Sox3.mouse_HMG_1	11	1	+	5.108318588656313	-0.9491375203040404	AAACAGGAACATTGTTG
chr6	13715714	13715715	chr6:13715715:G:A	rs113047626	G	A	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr6	13859552	13859553	chr6:13859553:A:T	rs1204196	A	T	T	Sox3.mouse_HMG_1	9	1	-	2.0872331939368203	0.6692949319922891	AAACAATAATTTCGTGT
chr6	14095369	14095370	chr6:14095370:A:G	rs9476496	A	G	G	Sox3.mouse_HMG_1	8	1	+	1.6137787600721674	0.5873652850615322	GAACAAGGACTTTGTAT
chr6	14194366	14194367	chr6:14194367:A:G	rs853392	A	G	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr6	14259939	14259940	chr6:14259940:C:A	rs9464672	C	A	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr6	14367335	14367336	chr6:14367336:T:C	rs9476543	T	C	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr6	14373200	14373201	chr6:14373201:G:C	rs7743383	G	C	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr6	14884164	14884165	chr6:14884165:G:C	rs52875	G	C	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr6	14975127	14975128	chr6:14975128:G:A	rs17529181	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr6	15238113	15238114	chr6:15238114:A:C	rs11760130	A	C	a	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr6	15258067	15258068	chr6:15258068:C:A	rs1077080	C	A	A	Sox3.mouse_HMG_1	14	1	-	1.3894440654254903	7.816093317207487	AAACAATGTGATTGGGG
chr6	15285077	15285078	chr6:15285078:A:T	rs116599870	A	T	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr6	15301722	15301723	chr6:15301723:G:A	rs794782	G	A	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr6	15343811	15343812	chr6:15343812:G:A	rs999350378	G	A	g	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr6	15343848	15343849	chr6:15343849:A:G	rs55844991	A	G	a	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr6	15620623	15620624	chr6:15620624:C:G	rs2619539	C	G	G	Sox3.mouse_HMG_1	13	1	-	5.2957465380436215	-0.8123592519822943	TAGCTATGATAGTGTTT
chr6	15969318	15969319	chr6:15969319:A:G	rs6904321	A	G	A	Sox3.mouse_HMG_1	9	1	-	6.521830947100744	6.557537071985312	CAACAATTATACTGTAG
chr6	16033453	16033454	chr6:16033454:C:T	rs9297000	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr6	16080443	16080444	chr6:16080444:A:C	rs4716041	A	C	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr6	16215618	16215619	chr6:16215619:C:T	rs61569822	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr6	16223938	16223939	chr6:16223939:G:T	rs9383134	G	T	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr6	16440801	16440802	chr6:16440802:T:C	rs1709172	T	C	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	16722710	16722711	chr6:16722711:C:T	rs10434861	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr6	17124130	17124131	chr6:17124131:C:A	rs12194276	C	A	A	Sox3.mouse_HMG_1	3	1	+	5.7528790261044875	-0.9718344367592109	AAACAAAGATATTATTA
chr6	17169832	17169833	chr6:17169833:A:C	rs6926074	A	C	C	Sox3.mouse_HMG_1	10	1	+	5.892442581262252	-0.6722128733190108	AAACAACAGTATTATTT
chr6	17532801	17532802	chr6:17532802:G:A	rs113831023	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr6	18035412	18035413	chr6:18035413:A:G	rs4712323	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr6	18035414	18035415	chr6:18035415:G:A	rs4712324	G	A	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr6	18094529	18094530	chr6:18094530:A:C	rs9477610	A	C	C	Sox3.mouse_HMG_1	4	1	+	12.574117722002525	5.848804007014918	AAACAATTATACTGTTT
chr6	18352744	18352745	chr6:18352745:A:C	rs1951924	A	C	.	Sox3.mouse_HMG_1	12	1	-	7.391767364739158	0.8236392940715355	AGGCAATAAAAGTGTTT
chr6	19244743	19244744	chr6:19244744:T:C	rs4712373	T	C	C	Sox3.mouse_HMG_1	11	1	+	6.082434636441718	0.024978527481365642	AAACAATGGCATAATTA
chr6	19244760	19244761	chr6:19244761:C:G	rs9460318	C	G	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr6	19392242	19392243	chr6:19392243:C:G	rs7755278	C	G	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr6	19804226	19804227	chr6:19804227:G:T	rs78895934	G	T	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr6	19804242	19804243	chr6:19804243:A:C	rs192789615	A	C	A	Sox3.mouse_HMG_1	0	1	+	5.305729353929607	3.7161378415774102	AAACAATGACCGCGTTT
chr6	19804249	19804250	chr6:19804250:G:A	rs138618611	G	A	G	Sox3.mouse_HMG_1	7	1	+	5.305729353929607	4.809659034152297	AAACAATGACCGCGTTT
chr6	19804275	19804276	chr6:19804276:T:C	rs73731206	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr6	19804278	19804279	chr6:19804279:T:C	rs79419305	T	C	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr6	19811759	19811760	chr6:19811760:G:A	rs9368127	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr6	19865457	19865458	chr6:19865458:C:T	rs13210561	C	T	C	Sox3.mouse_HMG_1	7	1	-	2.665917443358826	2.169847123581515	AAACGATGTCTGTGTTG
chr6	20319992	20319993	chr6:20319993:C:T	rs114949253	C	T	c	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr6	20665498	20665499	chr6:20665499:T:C	rs58048170	T	C	C	Sox3.mouse_HMG_1	10	1	-	3.9476786494694163	-2.960566509501923	CACCAATGCTATTCTTG
chr6	20741077	20741078	chr6:20741078:T:A	rs62399291	T	A	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr6	20751072	20751073	chr6:20751073:C:T	rs774994890	C	T	C	Sox3.mouse_HMG_1	13	1	-	4.42407220225854	-1.6840335877673756	GAACAATTACTCTGTTT
chr6	20751083	20751084	chr6:20751084:T:C	rs7747724	T	C	T	Sox3.mouse_HMG_1	2	1	-	4.42407220225854	0.016137223278079316	GAACAATTACTCTGTTT
chr6	20768231	20768232	chr6:20768232:T:C	rs9465886	T	C	C	Sox3.mouse_HMG_1	9	1	+	3.038139860918105	3.0738459858026745	TAACAATGCTATCTTTA
chr6	20768243	20768244	chr6:20768244:C:T	rs6926436	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr6	20804331	20804332	chr6:20804332:T:C	rs9465895	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr6	20827813	20827814	chr6:20827814:T:G	rs190783796	T	G	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr6	20920040	20920041	chr6:20920041:G:T	rs4712565	G	T	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	20990852	20990853	chr6:20990853:G:A	rs12528036	G	A	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr6	21457718	21457719	chr6:21457719:C:T	rs11758386	C	T	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr6	21666168	21666169	chr6:21666169:A:G	rs966941278	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.466843442206437	-4.259290035096017	AAACAATGATTTTGGAG
chr6	21666195	21666196	chr6:21666196:C:T	rs76062205	C	T	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr6	21825323	21825324	chr6:21825324:G:A	rs72842732	G	A	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr6	21893677	21893678	chr6:21893678:G:A	rs9350391	G	A	g	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr6	22003281	22003282	chr6:22003282:T:C	rs4710997	T	C	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr6	22322571	22322572	chr6:22322572:T:C	rs143177073	T	C	T	Sox3.mouse_HMG_1	16	1	+	5.385369106327658	1.7835724407066755	GGACAGTTTTATTGTTT
chr6	22421125	22421126	chr6:22421126:A:T	rs4370356	A	T	A	Sox3.mouse_HMG_1	15	1	-	3.1666769897593707	-0.33016663203310026	ATACAATGCCAGTGATC
chr6	22467148	22467149	chr6:22467149:C:T	rs62390206	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr6	22607829	22607830	chr6:22607830:G:A	rs75040753	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr6	22655837	22655838	chr6:22655838:C:G	rs9366468	C	G	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr6	22673223	22673224	chr6:22673224:T:C	rs926571	T	C	T	Sox3.mouse_HMG_1	9	1	+	5.048426841337322	5.0841329662218895	AAACAAAAATAGAGTTT
chr6	22809565	22809566	chr6:22809566:T:C	rs35349492	T	C	T	Sox3.mouse_HMG_1	11	1	+	2.4771041314670974	-3.5803519774932564	TGACAATGAAATTGGAT
chr6	22952255	22952256	chr6:22952256:A:C	rs114175650	A	C	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr6	23244108	23244109	chr6:23244109:A:G	rs7757127	A	G	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr6	23327707	23327708	chr6:23327708:A:G	rs76670053	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr6	23689115	23689116	chr6:23689116:C:A	rs17213333	C	A	C	Sox3.mouse_HMG_1	8	1	-	6.591246028808639	6.797838265350742	AAAAAATGGCAATGTTT
chr6	24219931	24219932	chr6:24219932:C:T	rs62403464	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr6	24229768	24229769	chr6:24229769:A:T	rs793838	A	T	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr6	24464282	24464283	chr6:24464283:G:T	rs2817244	G	T	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr6	24614834	24614835	chr6:24614835:G:A	rs7763790	G	A	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr6	24644029	24644030	chr6:24644030:T:C	rs115563696	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.2172454236744352	-4.508888053628022	AAACTATGTTATTGAGG
chr6	24895391	24895392	chr6:24895392:C:T	rs117398844	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr6	24899339	24899340	chr6:24899340:C:A	rs2817723	C	A	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr6	25005405	25005406	chr6:25005406:A:G	rs1536768	A	G	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr6	25138479	25138480	chr6:25138480:T:C	rs572255189	T	C	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr6	25138494	25138495	chr6:25138495:C:T	rs303019	C	T	T	Sox3.mouse_HMG_1	11	1	-	2.3636956550680965	-1.3707817719776505	TGCCAATTACAGTGTTA
chr6	25318817	25318818	chr6:25318818:A:G	rs113875637	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr6	25747179	25747180	chr6:25747180:C:T	rs9986459	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr6	25764911	25764912	chr6:25764912:A:G	rs2154217	A	G	A	Sox3.mouse_HMG_1	11	1	-	5.3240497014129575	-0.7334064075473951	CTGCAATAACATTGTAT
chr6	26026724	26026725	chr6:26026725:G:A	rs551140469	G	A	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr6	26122318	26122319	chr6:26122319:G:A	rs74571768	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr6	26193685	26193686	chr6:26193686:A:C	rs76841781	A	C	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr6	26233103	26233104	chr6:26233104:G:A	rs372812015	G	A	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr6	26239175	26239176	chr6:26239176:A:G	rs9358913	A	G	A	Sox3.mouse_HMG_1	11	1	-	3.0547717649660315	-3.0026843439943214	AATAAATGGCATTGTAT
chr6	26271484	26271485	chr6:26271485:A:T	rs9393690	A	T	.	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr6	26305274	26305275	chr6:26305275:T:C	rs62394764	T	C	T	Sox3.mouse_HMG_1	4	1	-	2.3336653706354125	-4.478659721341823	GAAAAATTACAGTATTT
chr6	26305281	26305282	chr6:26305282:A:T	rs4365922	A	T	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr6	26316594	26316595	chr6:26316595:T:C	rs75939831	T	C	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr6	26322395	26322396	chr6:26322396:G:T	rs73399394	G	T	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr6	26364701	26364702	chr6:26364702:T:C	rs9379855	T	C	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr6	26568512	26568513	chr6:26568513:C:T	rs1078679	C	T	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr6	27091882	27091883	chr6:27091883:T:C	rs79619069	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr6	27275354	27275355	chr6:27275355:C:T	rs35982103	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr6	27502473	27502474	chr6:27502474:A:G	rs114155291	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr6	27504708	27504709	chr6:27504709:T:C	rs74293985	T	C	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr6	27583429	27583430	chr6:27583430:T:G	rs73739148	T	G	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr6	27625721	27625722	chr6:27625722:T:G	rs1033451	T	G	T	Sox3.mouse_HMG_1	7	1	+	4.806627213508439	6.344176318250594	AAACAGTTGCATTCTTT
chr6	27721029	27721030	chr6:27721030:C:T	rs9468204	C	T	T	Sox3.mouse_HMG_1	9	1	+	2.4865418372893497	2.450835712404782	AAAAAACGTCAGTGTTA
chr6	28139997	28139998	chr6:28139998:T:A	rs3757185	T	A	T	Sox3.mouse_HMG_1	10	1	-	3.936060919526402	-2.8768740596406124	AAACAAATAAATTTTTT
chr6	28283206	28283207	chr6:28283207:G:A	rs6901575	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr6	28283207	28283208	chr6:28283208:C:T	rs9468325	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr6	28292665	28292666	chr6:28292666:C:G	rs11758337	C	G	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr6	28954289	28954290	chr6:28954290:G:A	rs148462657	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr6	28959356	28959357	chr6:28959357:T:C	rs2157313	T	C	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr6	29017412	29017413	chr6:29017413:G:A	rs929472074	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr6	29017427	29017428	chr6:29017428:A:G	rs9380103	A	G	A	Sox3.mouse_HMG_1	15	1	-	3.618822440806043	-0.68367935698944	TTAAAATGTCAGTGTTT
chr6	29514170	29514171	chr6:29514171:G:A	rs1010409	G	A	A	Sox3.mouse_HMG_1	8	1	-	6.1915217072256405	6.504260932136183	AGCCAATGCCAGTGTTT
chr6	29753619	29753620	chr6:29753620:G:C	rs2394164	G	C	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr6	29753637	29753638	chr6:29753638:A:G	rs1610625	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr6	29806842	29806843	chr6:29806843:G:A	rs2248870	G	A	-	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr6	29806849	29806850	chr6:29806850:G:A	rs2248871	G	A	-	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr6	29853490	29853491	chr6:29853491:G:A	rs3094643	G	A	-	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	29853491	29853492	chr6:29853492:G:C	rs3094177	G	C	-	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr6	29853492	29853493	chr6:29853493:G:A	rs3094176	G	A	-	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr6	29976024	29976025	chr6:29976025:T:A	rs3823364	T	A	-	Sox3.mouse_HMG_1	7	1	+	4.242998577731077	5.284477362695922	TAACAATTACTTAGTTT
chr6	29977730	29977731	chr6:29977731:C:T	rs9260860	C	T	-	Sox3.mouse_HMG_1	3	1	+	4.048502781969434	-1.934273336164889	GAACAAGGGTTTTGTTT
chr6	30015937	30015938	chr6:30015938:C:A	rs9261142	C	A	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr6	30034663	30034664	chr6:30034664:C:G	rs3121594	C	G	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr6	30062357	30062358	chr6:30062358:G:A	rs9261270	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr6	30062411	30062412	chr6:30062412:T:A	rs9261271	T	A	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr6	30207794	30207795	chr6:30207795:C:T	rs150308202	C	T	C	Sox3.mouse_HMG_1	16	1	-	2.0839565186567364	1.6501250739356295	AAGGAATTACATTGTCG
chr6	30238408	30238409	chr6:30238409:G:A	rs10456378	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr6	30405034	30405035	chr6:30405035:G:T	rs1264562	G	T	-	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr6	30719643	30719644	chr6:30719644:C:G	rs566643184	C	G	C	Sox3.mouse_HMG_1	13	1	-	5.759887260692426	-0.34821852933348996	AAAGAATAAAATAGTTT
chr6	30785580	30785581	chr6:30785581:T:C	rs9468834	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr6	30787966	30787967	chr6:30787967:C:A	rs16897899	C	A	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr6	31087423	31087424	chr6:31087424:T:G	rs17190407	T	G	t	Sox3.mouse_HMG_1	1	1	-	7.304863618583941	1.6670087223228318	GAACAATGTTATTTTCT
chr6	31205990	31205991	chr6:31205991:A:G	rs12660585	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr6	31206028	31206029	chr6:31206029:T:C	rs28744238	T	C	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr6	31274059	31274060	chr6:31274060:C:T	rs3130447	C	T	T	Sox3.mouse_HMG_1	8	1	-	4.391431028092703	5.417844503103339	AAATAAAAGCATTGTTA
chr6	31274060	31274061	chr6:31274061:T:C	rs3094681	T	C	C	Sox3.mouse_HMG_1	7	1	-	4.391431028092703	4.887501347870014	AAATAAAAGCATTGTTA
chr6	31484654	31484655	chr6:31484655:C:T	rs2904789	C	T	-	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr6	31727659	31727660	chr6:31727660:G:A	rs138907940	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr6	32112561	32112562	chr6:32112562:C:T	rs115346508	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr6	32112565	32112566	chr6:32112566:T:G	chr6:32112566:T:G	T	G	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr6	32343189	32343190	chr6:32343190:C:T	rs9268260	C	T	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr6	32343208	32343209	chr6:32343209:C:G	rs9268261	C	G	C	Sox3.mouse_HMG_1	9	1	+	2.6243452549581057	-3.412298751592325	CAACAACACCAGAGTTT
chr6	32473799	32473800	chr6:32473800:G:C	rs13191565	G	C	.	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr6	32473901	32473902	chr6:32473902:A:G	rs7739375	A	G	.	Sox3.mouse_HMG_1	15	1	-	2.914688338590305	-1.387813459205178	AAACAGTTGTCTTGTTA
chr6	32530605	32530606	chr6:32530606:T:C	rs77691050	T	C	.	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr6	32530614	32530615	chr6:32530615:C:G	rs112487986	C	G	.	Sox3.mouse_HMG_1	8	1	-	5.338320018097276	5.232173029728836	AAACAATTGTCTTGTCA
chr6	32530627	32530628	chr6:32530628:A:G	rs113044661	A	G	.	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr6	32639675	32639676	chr6:32639676:C:T	rs9272583	C	T	.	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr6	32640772	32640773	chr6:32640773:A:C	rs9272649	A	C	.	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr6	32690549	32690550	chr6:32690550:G:T	rs9275212	G	T	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr6	32690557	32690558	chr6:32690558:T:C	rs9275213	T	C	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr6	32690573	32690574	chr6:32690574:A:T	rs28371255	A	T	A	Sox3.mouse_HMG_1	6	1	+	2.906132792026458	9.814587826122866	AAAAAAATACAGTGTTT
chr6	32690588	32690589	chr6:32690589:T:C	rs28371256	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr6	32690597	32690598	chr6:32690598:T:G	rs28371257	T	G	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr6	32695511	32695512	chr6:32695512:C:A	rs9275292	C	A	A	Sox3.mouse_HMG_1	3	1	+	4.042547801100384	-2.6821656617633165	TAACAATTAAAATGATT
chr6	32752854	32752855	chr6:32752855:T:C	rs10947341	T	C	.	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr6	32752859	32752860	chr6:32752860:G:A	rs9276527	G	A	.	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr6	32816842	32816843	chr6:32816843:C:T	rs2071472	C	T	T	Sox3.mouse_HMG_1	13	1	-	2.6112190335210204	-3.496886756504896	GAACAGAGCAATTGTTT
chr6	32957812	32957813	chr6:32957813:T:G	rs35546426	T	G	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr6	33017598	33017599	chr6:33017599:A:T	rs2395305	A	T	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr6	33017635	33017636	chr6:33017636:A:G	rs1346932	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr6	33178969	33178970	chr6:33178970:G:A	rs145499142	G	A	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr6	33429698	33429699	chr6:33429699:C:T	rs139673206	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr6	33700079	33700080	chr6:33700080:T:C	rs572708	T	C	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr6	33854754	33854755	chr6:33854755:A:G	rs6938075	A	G	G	Sox3.mouse_HMG_1	14	1	-	1.1707891379076485	-4.939101777341059	GGCCAAGGACATTGTTT
chr6	34160312	34160313	chr6:34160313:C:A	rs9368797	C	A	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	34160324	34160325	chr6:34160325:T:C	rs75293058	T	C	T	Sox3.mouse_HMG_1	10	1	-	4.226673366459967	-2.6815717925113716	ACACAATGTCAGTGGTG
chr6	34164591	34164592	chr6:34164592:A:C	rs9469723	A	C	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr6	34335707	34335708	chr6:34335708:G:A	rs78315810	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr6	34383609	34383610	chr6:34383610:T:C	rs80260176	T	C	T	Sox3.mouse_HMG_1	15	1	+	4.421312009920504	0.11881021212502024	AAACAATTGTATTCCTG
chr6	35142966	35142967	chr6:35142967:C:G	chr6:35142967:C:G	C	G	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr6	35169212	35169213	chr6:35169213:T:C	rs62404583	T	C	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr6	35344802	35344803	chr6:35344803:T:C	rs75205617	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr6	35415645	35415646	chr6:35415646:G:A	rs78609397	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr6	35611224	35611225	chr6:35611225:A:G	rs3777747	A	G	A	Sox3.mouse_HMG_1	12	1	-	3.194427991642718	-3.012037593575134	GATCAATAATAGTGCTG
chr6	35741175	35741176	chr6:35741176:G:A	rs6936778	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr6	35756340	35756341	chr6:35756341:T:C	rs7739014	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr6	35756373	35756374	chr6:35756374:G:C	rs12196319	G	C	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr6	36301825	36301826	chr6:36301826:G:A	rs10947600	G	A	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr6	36392347	36392348	chr6:36392348:G:A	rs62403727	G	A	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr6	36426038	36426039	chr6:36426039:A:G	rs664370	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr6	36610728	36610729	chr6:36610729:T:C	rs73408383	T	C	C	Sox3.mouse_HMG_1	4	1	-	3.6122023395267284	-3.2001227524505076	GGACAATGGCATTTTAT
chr6	36634467	36634468	chr6:36634468:T:C	rs112719658	T	C	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	36651072	36651073	chr6:36651073:G:A	rs75243073	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr6	37017037	37017038	chr6:37017038:T:C	rs1547571	T	C	T	Sox3.mouse_HMG_1	13	1	-	3.8109209255827983	9.919026715608714	AAACAATCCTATTATAT
chr6	37176569	37176570	chr6:37176570:T:C	rs112413546	T	C	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr6	37239937	37239938	chr6:37239938:C:T	rs1224294	C	T	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr6	37877753	37877754	chr6:37877754:A:G	rs35806631	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	37941307	37941308	chr6:37941308:G:A	rs2842510	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr6	37984548	37984549	chr6:37984549:A:G	rs9462374	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr6	38413493	38413494	chr6:38413494:C:T	rs2246023	C	T	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr6	38770971	38770972	chr6:38770972:A:T	rs1614699	A	T	T	Sox3.mouse_HMG_1	11	1	-	2.0288515345543647	-3.8336045593522625	GCACAATGTTTTTGTAT
chr6	39021565	39021566	chr6:39021566:G:A	rs2235870	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr6	39021608	39021609	chr6:39021609:G:T	rs2235869	G	T	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr6	39068059	39068060	chr6:39068060:A:C	rs7766275	A	C	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr6	39371236	39371237	chr6:39371237:C:T	rs10046447	C	T	c	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr6	39371237	39371238	chr6:39371238:G:A	rs115063005	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr6	39530470	39530471	chr6:39530471:G:A	rs13213322	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr6	39574131	39574132	chr6:39574132:A:G	rs9394615	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr6	40171610	40171611	chr6:40171611:A:G	rs73732508	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr6	40264245	40264246	chr6:40264246:G:C	rs114678891	G	C	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr6	40345699	40345700	chr6:40345700:A:G	rs930310652	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr6	40345716	40345717	chr6:40345717:A:T	rs2504824	A	T	T	Sox3.mouse_HMG_1	2	1	+	2.975202222521278	-2.9268845134354873	CAACAGTGTCAGTGTGA
chr6	40978886	40978887	chr6:40978887:A:G	rs9381016	A	G	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr6	41062486	41062487	chr6:41062487:C:T	rs2268190	C	T	T	Sox3.mouse_HMG_1	3	1	+	1.144259379372463	-4.838516738761859	CAACAATTGCTGTGTGA
chr6	41330276	41330277	chr6:41330277:C:G	rs2395775	C	G	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr6	41475938	41475939	chr6:41475939:T:C	rs78320372	T	C	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr6	41475950	41475951	chr6:41475951:T:C	rs2477831	T	C	C	Sox3.mouse_HMG_1	5	1	-	1.7836151144671573	-4.942518362835299	AAGCCATAGTAGTGTTC
chr6	41659009	41659010	chr6:41659010:G:T	rs9357365	G	T	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr6	41659030	41659031	chr6:41659031:G:C	rs78248170	G	C	G	Sox3.mouse_HMG_1	2	1	-	3.243012032479018	5.26041193321987	GACCATTGTTATTGTTA
chr6	41776237	41776238	chr6:41776238:G:C	rs66711509	G	C	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr6	42167176	42167177	chr6:42167177:G:T	rs57668268	G	T	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr6	42259118	42259119	chr6:42259119:T:C	rs731775	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr6	42376878	42376879	chr6:42376879:T:C	rs260234	T	C	T	Sox3.mouse_HMG_1	12	1	+	3.6638463571746818	-2.54261922804317	AAACAATTTTTTTTTTG
chr6	42627308	42627309	chr6:42627309:A:C	rs12529803	A	C	A	Sox3.mouse_HMG_1	14	1	-	4.712356085865301	-1.7142931659166958	TAACATTACTATTGTAA
chr6	42742345	42742346	chr6:42742346:G:A	rs61296601	G	A	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr6	42797672	42797673	chr6:42797673:A:T	rs9462828	A	T	a	Sox3.mouse_HMG_1	0	1	+	3.5168679389019797	1.4937136135857358	AAATTATTAAATTGTTA
chr6	43294965	43294966	chr6:43294966:A:T	rs16896398	A	T	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr6	43469495	43469496	chr6:43469496:A:C	rs116157426	A	C	A	Sox3.mouse_HMG_1	14	1	-	2.296557203421911	-4.130092048360087	GAACAATGGCTGGGTTT
chr6	43604407	43604408	chr6:43604408:A:G	rs6912884	A	G	G	Sox3.mouse_HMG_1	5	1	+	1.6105345674522513	-5.115598909850204	AGACAAAACCAGTGTTC
chr6	43783337	43783338	chr6:43783338:A:G	rs3025033	A	G	A	Sox3.mouse_HMG_1	4	1	+	1.2548492529594297	-5.557475839017805	CAGCAATGTTCTTGTGG
chr6	43946250	43946251	chr6:43946251:G:T	rs7764227	G	T	T	Sox3.mouse_HMG_1	13	1	+	1.9247385201145235	-4.444381095281011	GAACAATGAGATGGTCT
chr6	43957788	43957789	chr6:43957789:A:G	rs4513773	A	G	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr6	43971193	43971194	chr6:43971194:A:G	rs9472179	A	G	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr6	44456638	44456639	chr6:44456639:A:T	rs517214	A	T	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr6	44541715	44541716	chr6:44541716:G:A	rs6918083	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr6	44607558	44607559	chr6:44607559:T:C	rs73737027	T	C	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr6	44619225	44619226	chr6:44619226:C:T	rs57743756	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr6	44628315	44628316	chr6:44628316:T:G	rs497177	T	G	G	Sox3.mouse_HMG_1	5	1	-	1.7534163098150843	-5.059728544477001	GGACAATGCAAATGTCT
chr6	44895657	44895658	chr6:44895658:G:A	rs9367210	G	A	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr6	45314373	45314374	chr6:45314374:G:T	rs12191751	G	T	G	Sox3.mouse_HMG_1	7	1	-	8.846245917506556	13.970867732654018	AAACAATCATATTGTCA
chr6	45428051	45428052	chr6:45428052:A:C	rs2819860	A	C	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr6	45428054	45428055	chr6:45428055:A:C	rs2677105	A	C	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr6	45987593	45987594	chr6:45987594:G:T	rs6921959	G	T	G	Sox3.mouse_HMG_1	8	1	-	3.7374506295253545	4.87001109290443	AAATAATTCTTTTGTTG
chr6	46653675	46653676	chr6:46653676:A:C	rs199817388	A	C	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr6	46759177	46759178	chr6:46759178:C:A	rs9472840	C	A	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr6	46903447	46903448	chr6:46903448:C:T	rs1328965	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr6	46964045	46964046	chr6:46964046:T:C	rs9472935	T	C	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr6	46969930	46969931	chr6:46969931:A:G	rs6942339	A	G	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr6	47153185	47153186	chr6:47153186:A:G	rs115423236	A	G	A	Sox3.mouse_HMG_1	14	1	+	6.427589697109468	5.286417794022562	CAACAATTGTATTGACT
chr6	47169229	47169230	chr6:47169230:C:T	rs6458546	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr6	47172435	47172436	chr6:47172436:T:C	rs6935653	T	C	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr6	47437653	47437654	chr6:47437654:A:C	rs62410670	A	C	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr6	47659290	47659291	chr6:47659291:A:G	rs4711895	A	G	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr6	47679484	47679485	chr6:47679485:C:T	rs10948374	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr6	47743988	47743989	chr6:47743989:A:C	rs9473167	A	C	A	Sox3.mouse_HMG_1	14	1	-	6.414256920472109	-0.012392331309887983	AAACAATTCCATAGTGG
chr6	48136080	48136081	chr6:48136081:T:C	rs13202737	T	C	T	Sox3.mouse_HMG_1	12	1	+	3.985620892524558	-2.2208446926932934	GAACAATACTTTTTTTT
chr6	48388892	48388893	chr6:48388893:C:T	rs12209582	C	T	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr6	48560642	48560643	chr6:48560643:G:A	rs10948420	G	A	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr6	48560646	48560647	chr6:48560647:C:T	rs10948421	C	T	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr6	48611413	48611414	chr6:48611414:G:A	rs1573203	G	A	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr6	48706979	48706980	chr6:48706980:G:A	rs10484857	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr6	49676869	49676870	chr6:49676870:G:A	rs73435899	G	A	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr6	49849860	49849861	chr6:49849861:T:C	rs62404912	T	C	T	Sox3.mouse_HMG_1	14	1	+	1.1417655039901928	-4.968125411258514	AAACCATGGTTTTGTAG
chr6	50159687	50159688	chr6:50159688:T:C	rs10948548	T	C	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr6	50234237	50234238	chr6:50234238:T:C	rs12528705	T	C	T	Sox3.mouse_HMG_1	11	1	+	2.274914366651629	-3.782541742308724	ACACAATGGCATTTTAA
chr6	50355138	50355139	chr6:50355139:T:G	rs9349536	T	G	G	Sox3.mouse_HMG_1	14	1	+	4.463738305746536	-1.9629109460354623	GACCTATACCATTGTTT
chr6	50815574	50815575	chr6:50815575:T:C	rs939577086	T	C	T	Sox3.mouse_HMG_1	5	1	-	3.2836184985143833	-3.442514978788073	GAAAAATATCATTATTA
chr6	51541971	51541972	chr6:51541972:G:C	chr6:51541972:G:C	G	C	G	Sox3.mouse_HMG_1	3	1	-	1.1985908277723094	-5.708444191885343	CAGCAATGCCAGTGAAG
chr6	51800798	51800799	chr6:51800799:T:C	rs1326570	T	C	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr6	51857598	51857599	chr6:51857599:T:C	rs141894699	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr6	52019330	52019331	chr6:52019331:G:A	rs2195591	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr6	52156327	52156328	chr6:52156328:A:G	rs764530160	A	G	A	Sox3.mouse_HMG_1	16	1	+	6.021494923006376	6.4553263677274835	CAACAATGCCCTTGTAA
chr6	52287091	52287092	chr6:52287092:A:T	rs9296673	A	T	A	Sox3.mouse_HMG_1	15	1	-	1.445117914888712	-2.051725706903759	GAAAAATGGCAGTATTA
chr6	52338070	52338071	chr6:52338071:C:T	rs74542499	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr6	52366114	52366115	chr6:52366115:C:T	rs61021095	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr6	53042486	53042487	chr6:53042487:G:A	rs115214880	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr6	53113254	53113255	chr6:53113255:G:A	rs75128058	G	A	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr6	53125207	53125208	chr6:53125208:A:G	rs4077047	A	G	A	Sox3.mouse_HMG_1	15	1	-	5.63210497028574	1.3296031724902566	AAACTATTATATTGATA
chr6	53287843	53287844	chr6:53287844:G:A	rs6458913	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr6	53287884	53287885	chr6:53287885:G:A	rs150583340	G	A	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr6	53322884	53322885	chr6:53322885:A:G	rs9474485	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.0052516216723735	-2.0522044872879794	GAAGAATATTATGGTTT
chr6	53398582	53398583	chr6:53398583:T:A	rs9395862	T	A	T	Sox3.mouse_HMG_1	0	1	-	2.323044172058878	0.2998898467426342	AAACAGTAATACTGTGT
chr6	53527309	53527310	chr6:53527310:A:C	rs761142	A	C	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr6	53640335	53640336	chr6:53640336:T:A	rs9474608	T	A	T	Sox3.mouse_HMG_1	6	1	+	3.771192823136631	-3.1372622109597783	AAACAATCAAAATGTAT
chr6	53645522	53645523	chr6:53645523:A:T	rs17215384	A	T	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr6	53746806	53746807	chr6:53746807:T:G	rs769969833	T	G	T	Sox3.mouse_HMG_1	6	1	+	2.3225238148796055	-4.585931219216804	CAAAAATAATGGTGTTT
chr6	54334319	54334320	chr6:54334320:A:G	rs906658	A	G	G	Sox3.mouse_HMG_1	10	1	+	3.209408020979626	-3.698837137991714	AGGCAAGATTATTGTTT
chr6	55406018	55406019	chr6:55406019:T:C	rs11754362	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.869690942939402	-4.856442534363052	TAAAAATTGCACTGTTG
chr6	55492283	55492284	chr6:55492284:G:T	rs9296785	G	T	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr6	55674661	55674662	chr6:55674662:G:A	rs79131328	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr6	55825540	55825541	chr6:55825541:A:G	rs966329	A	G	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr6	55898710	55898711	chr6:55898711:C:T	rs2397194	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr6	56220450	56220451	chr6:56220451:T:G	rs9382595	T	G	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr6	56293291	56293292	chr6:56293292:C:G	rs9475656	C	G	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr6	56329183	56329184	chr6:56329184:A:G	rs9382619	A	G	A	Sox3.mouse_HMG_1	3	1	-	3.3500533912202757	9.332829509354598	TAATAATGATAGTGATA
chr6	56438872	56438873	chr6:56438873:A:G	rs139468988	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr6	56442438	56442439	chr6:56442439:T:C	rs17825773	T	C	C	Sox3.mouse_HMG_1	16	1	+	2.675751762696055	-0.9260449029249271	AAACAATGGATGTCTTT
chr6	56491225	56491226	chr6:56491226:C:T	rs78801074	C	T	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr6	56593011	56593012	chr6:56593012:G:C	rs56024486	G	C	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr6	56656161	56656162	chr6:56656162:G:A	rs28633631	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr6	56684286	56684287	chr6:56684287:G:A	rs182546515	G	A	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr6	56803446	56803447	chr6:56803447:A:G	rs71564856	A	G	G	Sox3.mouse_HMG_1	16	1	-	2.4493366186968237	-1.1524600469241586	AGGCTATTCTATTGTTT
chr6	56983888	56983889	chr6:56983889:A:G	rs34027274	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.857654185779171	-2.8684792915232835	AAACAATGACAAAGTAA
chr6	57266400	57266401	chr6:57266401:T:C	rs71564886	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr6	57266414	57266415	chr6:57266415:A:G	rs10949014	A	G	A	Sox3.mouse_HMG_1	1	1	+	2.4248989736698228	-1.9025343697328712	TAAAAATATCAGAGTTT
chr6	57304507	57304508	chr6:57304508:C:T	rs6459187	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr6	57752726	57752727	chr6:57752727:G:C	rs1453014274	G	C	.	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr6	58059551	58059552	chr6:58059552:G:A	rs4928437	G	A	g	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr6	61793890	61793891	chr6:61793891:G:T	rs1192072	G	T	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr6	61949457	61949458	chr6:61949458:C:T	rs9363569	C	T	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr6	63352105	63352106	chr6:63352106:C:G	rs12111039	C	G	G	Sox3.mouse_HMG_1	8	1	+	3.5076405701103184	3.6137875584787587	AAAAAAGACTATTGTTA
chr6	63492713	63492714	chr6:63492714:C:T	rs2758225	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	63963515	63963516	chr6:63963516:G:A	rs9362319	G	A	G	Sox3.mouse_HMG_1	15	1	-	3.026860564281932	7.329362362077416	AAGCAATGCCATTTTCG
chr6	64385303	64385304	chr6:64385304:G:C	rs585253	G	C	N	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr6	64672319	64672320	chr6:64672320:C:T	rs12662978	C	T	C	Sox3.mouse_HMG_1	8	1	-	1.1031801144106903	2.1295935894213263	AAACAAAGGTCTTGTGT
chr6	66081295	66081296	chr6:66081296:G:T	rs3912417	G	T	g	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr6	66500101	66500102	chr6:66500102:G:A	rs1913306	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr6	66638526	66638527	chr6:66638527:C:T	rs1026389	C	T	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr6	66662483	66662484	chr6:66662484:A:C	rs12525671	A	C	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr6	67115468	67115469	chr6:67115469:C:G	rs2502269	C	G	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr6	67542864	67542865	chr6:67542865:G:T	rs2374175	G	T	G	Sox3.mouse_HMG_1	14	1	+	3.6075568433470564	10.034206095129056	AAAAAATGGAATTGGTG
chr6	68172544	68172545	chr6:68172545:G:A	rs12207132	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr6	68310867	68310868	chr6:68310868:G:C	rs11758647	G	C	C	Sox3.mouse_HMG_1	9	1	-	4.659739304758481	-1.3769047017919513	AAACAATAACTGTATTT
chr6	68616101	68616102	chr6:68616102:G:A	rs76217514	G	A	G	Sox3.mouse_HMG_1	8	1	-	2.047526845218683	2.360266070129226	CAGAAATGCCATTGTCT
chr6	68634576	68634577	chr6:68634577:T:C	rs530316276	T	C	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr6	68654145	68654146	chr6:68654146:A:G	rs2802691	A	G	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr6	68826689	68826690	chr6:68826690:T:C	rs62418566	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr6	68858840	68858841	chr6:68858841:G:T	rs518704	G	T	T	Sox3.mouse_HMG_1	3	1	-	11.36392284077027	4.639209377906572	AAACAATGGTTTTGTTG
chr6	69028139	69028140	chr6:69028140:T:C	rs1283903	T	C	T	Sox3.mouse_HMG_1	5	1	-	4.834265763528311	-1.8918677137741455	GAACAATTTCATTCTGG
chr6	69059546	69059547	chr6:69059547:G:A	rs72901517	G	A	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	69150078	69150079	chr6:69150079:T:C	rs1600873	T	C	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr6	69165426	69165427	chr6:69165427:C:T	rs7749628	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr6	69678858	69678859	chr6:69678859:A:G	rs3823078	A	G	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr6	69815088	69815089	chr6:69815089:T:C	rs78323479	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr6	70293065	70293066	chr6:70293066:A:G	rs3793075	A	G	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr6	70356146	70356147	chr6:70356147:C:T	rs4285288	C	T	T	Sox3.mouse_HMG_1	3	1	+	3.2525787099416474	-2.7301974081926748	AAACAAAAAAAGTGTGA
chr6	70356164	70356165	chr6:70356165:C:G	rs115702417	C	G	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr6	70559137	70559138	chr6:70559138:G:A	rs7755334	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr6	71081197	71081198	chr6:71081198:C:T	rs4706480	C	T	C	Sox3.mouse_HMG_1	3	1	+	7.246918335169595	1.2641422170352743	AAACGATTGAAGTGTTT
chr6	71291162	71291163	chr6:71291163:G:T	rs9360445	G	T	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr6	71350155	71350156	chr6:71350156:A:G	rs6914785	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr6	71403518	71403519	chr6:71403519:C:T	rs72923452	C	T	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr6	71444628	71444629	chr6:71444629:G:A	rs9360453	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr6	71529581	71529582	chr6:71529582:G:A	rs169211	G	A	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr6	71886075	71886076	chr6:71886076:G:T	rs9358985	G	T	G	Sox3.mouse_HMG_1	16	1	+	6.893571822044017	7.8594234628011295	AAAAAATCACATTGTTG
chr6	72023646	72023647	chr6:72023647:C:T	rs489348	C	T	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr6	72466440	72466441	chr6:72466441:G:A	rs72941788	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr6	72640491	72640492	chr6:72640492:A:G	rs12196826	A	G	G	Sox3.mouse_HMG_1	8	1	+	7.542670024074656	6.516256549064019	TAACAACAACATTGTAT
chr6	72676089	72676090	chr6:72676090:G:A	rs12210850	G	A	G	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr6	72827196	72827197	chr6:72827197:A:T	rs62412469	A	T	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr6	72827223	72827224	chr6:72827224:C:T	rs73543830	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr6	72834776	72834777	chr6:72834777:G:A	rs6915355	G	A	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr6	72878510	72878511	chr6:72878511:G:A	rs62412473	G	A	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr6	73043789	73043790	chr6:73043790:G:A	rs12213933	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr6	73109205	73109206	chr6:73109206:T:A	rs9293920	T	A	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr6	73471898	73471899	chr6:73471899:C:T	rs903517	C	T	c	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	74574974	74574975	chr6:74574975:C:G	rs111643957	C	G	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr6	74991950	74991951	chr6:74991951:T:G	rs10943230	T	G	T	Sox3.mouse_HMG_1	5	1	-	2.9062286319480064	-3.90691622234408	AAGCAATGGAATTCTCT
chr6	75167549	75167550	chr6:75167550:G:A	rs185951214	G	A	g	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr6	75338424	75338425	chr6:75338425:G:A	rs4380723	G	A	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr6	75432116	75432117	chr6:75432117:T:C	rs2951932	T	C	C	Sox3.mouse_HMG_1	5	1	-	5.559209299763595	-1.166924177538859	AAACAATGGAACTATTT
chr6	75449931	75449932	chr6:75449932:T:G	rs73749478	T	G	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr6	75926025	75926026	chr6:75926026:C:T	rs9343330	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr6	76189052	76189053	chr6:76189053:A:G	rs6941463	A	G	a	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr6	76522190	76522191	chr6:76522191:T:G	rs9361081	T	G	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr6	77017595	77017596	chr6:77017596:G:A	rs9343540	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr6	77249964	77249965	chr6:77249965:A:G	rs16888688	A	G	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr6	77559198	77559199	chr6:77559199:T:C	rs1343492	T	C	T	Sox3.mouse_HMG_1	11	1	+	3.3325576338854823	-2.7248984750748706	AAACAATCACATTGAGA
chr6	77681360	77681361	chr6:77681361:C:T	rs13197085	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr6	77849016	77849017	chr6:77849017:G:T	rs4056845	G	T	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr6	78156180	78156181	chr6:78156181:G:C	rs9361376	G	C	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr6	78243528	78243529	chr6:78243529:G:A	rs6911371	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr6	79840298	79840299	chr6:79840299:T:C	rs58131569	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr6	79894710	79894711	chr6:79894711:C:A	rs16891209	C	A	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr6	80003181	80003182	chr6:80003182:A:G	rs73747936	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr6	80005445	80005446	chr6:80005446:G:A	rs9341801	G	A	G	Sox3.mouse_HMG_1	8	1	+	2.0610402955793754	3.0874537705900114	GAATAAAGGAATTGTTA
chr6	80259384	80259385	chr6:80259385:A:T	rs669420	A	T	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr6	80316733	80316734	chr6:80316734:T:C	rs700490	T	C	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr6	80383364	80383365	chr6:80383365:A:G	rs1436862	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr6	80873350	80873351	chr6:80873351:A:G	rs6911460	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr6	80996518	80996519	chr6:80996519:T:C	rs7758624	T	C	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr6	81459661	81459662	chr6:81459662:C:G	rs73749117	C	G	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr6	81714878	81714879	chr6:81714879:A:G	rs194898	A	G	A	Sox3.mouse_HMG_1	5	1	+	6.014352591150958	-0.7117808861514974	AATCAATGCAATTGTCA
chr6	81821868	81821869	chr6:81821869:C:T	rs733415	C	T	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr6	81845963	81845964	chr6:81845964:C:T	rs6926755	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr6	82066308	82066309	chr6:82066309:A:G	rs1984189	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr6	82738112	82738113	chr6:82738113:G:A	rs7773826	G	A	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr6	83042591	83042592	chr6:83042592:C:T	rs148234966	C	T	C	Sox3.mouse_HMG_1	7	1	-	2.7463968737150615	2.2503265539377497	CAACAATGTCTGTCTTT
chr6	83265809	83265810	chr6:83265810:C:T	rs34326691	C	T	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr6	83279141	83279142	chr6:83279142:T:C	rs1145917	T	C	T	Sox3.mouse_HMG_1	12	1	+	4.399200340384572	-1.8072652448332793	AAACAATGACACTGAAG
chr6	83461719	83461720	chr6:83461720:C:G	rs16885798	C	G	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr6	83850299	83850300	chr6:83850300:A:C	rs9344361	A	C	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr6	84018339	84018340	chr6:84018340:T:G	rs150064727	T	G	T	Sox3.mouse_HMG_1	6	1	+	1.634433512278034	-5.274021521818381	AAGCAGTGAGATTGTTA
chr6	84334200	84334201	chr6:84334201:A:G	rs9359585	A	G	A	Sox3.mouse_HMG_1	2	1	+	4.638998986041852	0.23106400706139046	ATACAGTGTTAGTGTTG
chr6	84360664	84360665	chr6:84360665:G:C	rs4504449	G	C	G	Sox3.mouse_HMG_1	13	1	+	3.020799794091646	-3.08730599593427	AGGCAATGCAAATGTTT
chr6	84414774	84414775	chr6:84414775:C:T	rs72898814	C	T	C	Sox3.mouse_HMG_1	13	1	-	4.589276567854355	-1.5188292221715614	AAACAAAACAAGTGTAT
chr6	84448490	84448491	chr6:84448491:A:C	rs9449914	A	C	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr6	84505117	84505118	chr6:84505118:C:A	rs9341979	C	A	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr6	84605493	84605494	chr6:84605494:C:A	rs11968722	C	A	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr6	84605534	84605535	chr6:84605535:G:C	rs34848373	G	C	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr6	84640937	84640938	chr6:84640938:C:T	rs59014682	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr6	84645436	84645437	chr6:84645437:T:A	rs6932882	T	A	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr6	84977394	84977395	chr6:84977395:G:A	chr6:84977395:G:A	G	A	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr6	84977418	84977419	chr6:84977419:G:C	rs16875388	G	C	G	Sox3.mouse_HMG_1	3	1	-	1.8197774977778773	-5.087257521879776	GCACAATAGCATTGAGT
chr6	85058985	85058986	chr6:85058986:C:T	rs9450135	C	T	T	Sox3.mouse_HMG_1	7	1	+	5.079730232404918	9.162873262587537	AAACTATCGTAGTGTTT
chr6	85059010	85059011	chr6:85059011:C:T	rs62420794	C	T	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr6	85059011	85059012	chr6:85059012:G:A	rs117600122	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr6	85119419	85119420	chr6:85119420:A:C	rs10806294	A	C	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr6	85268560	85268561	chr6:85268561:C:T	rs550481	C	T	.	Sox3.mouse_HMG_1	7	1	-	3.794241587764634	3.298171267987323	AACAAATGCCAGTGTTT
chr6	85391197	85391198	chr6:85391198:A:G	rs7775853	A	G	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr6	85404772	85404773	chr6:85404773:C:T	rs9362209	C	T	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr6	85678169	85678170	chr6:85678170:G:T	rs1059307	G	T	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr6	86764794	86764795	chr6:86764795:T:C	rs12526964	T	C	T	Sox3.mouse_HMG_1	5	1	-	0.6134979668521964	-6.11263551045026	GAGCAATGCCATGGCTT
chr6	87100022	87100023	chr6:87100023:T:A	rs981086	T	A	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr6	87338472	87338473	chr6:87338473:A:G	rs242279	A	G	A	Sox3.mouse_HMG_1	14	1	+	2.197111757698151	1.0559398546112453	CAGAAATGACATTGATT
chr6	87851932	87851933	chr6:87851933:T:C	rs9351133	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	88141967	88141968	chr6:88141968:G:T	rs16880248	G	T	g	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr6	88179496	88179497	chr6:88179497:C:G	rs4707437	C	G	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr6	88562058	88562059	chr6:88562059:C:T	rs9294404	C	T	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr6	88698982	88698983	chr6:88698983:G:C	rs2756361	G	C	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr6	89080489	89080490	chr6:89080490:G:A	rs2231266	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr6	89357995	89357996	chr6:89357996:T:C	rs1782	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr6	89826273	89826274	chr6:89826274:G:A	rs2777848	G	A	a	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr6	90210465	90210466	chr6:90210466:C:G	rs4707606	C	G	C	Sox3.mouse_HMG_1	0	1	-	2.5549124407657815	2.3381375938751217	GAACAAGGCCAGTCTTT
chr6	90229816	90229817	chr6:90229817:T:C	rs1446158099	T	C	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr6	90369340	90369341	chr6:90369341:G:A	rs13202876	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr6	90369343	90369344	chr6:90369344:T:C	rs571933364	T	C	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr6	90369381	90369382	chr6:90369382:C:A	rs75895495	C	A	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr6	90413801	90413802	chr6:90413802:G:T	rs144716657	G	T	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr6	90620156	90620157	chr6:90620157:C:T	rs12528032	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr6	90654722	90654723	chr6:90654723:C:T	rs1923066	C	T	C	Sox3.mouse_HMG_1	15	1	-	1.0592520064186506	2.1288272422322145	AAGCCATGGAATTGTGG
chr6	90761946	90761947	chr6:90761947:G:T	rs1919533	G	T	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr6	91172263	91172264	chr6:91172264:G:C	rs4544882	G	C	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr6	91221356	91221357	chr6:91221357:C:T	rs9345115	C	T	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr6	91475909	91475910	chr6:91475910:C:T	rs75464939	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr6	91852803	91852804	chr6:91852804:C:T	rs2454267	C	T	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr6	92362785	92362786	chr6:92362786:T:C	rs7769347	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr6	93315156	93315157	chr6:93315157:T:C	rs164292	T	C	-	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr6	93315188	93315189	chr6:93315189:T:C	rs163945	T	C	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr6	93506826	93506827	chr6:93506827:T:G	rs967879	T	G	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr6	94204075	94204076	chr6:94204076:G:C	rs112159673	G	C	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr6	94478295	94478296	chr6:94478296:G:T	rs9445284	G	T	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr6	95121045	95121046	chr6:95121046:G:A	rs1025270828	G	A	A	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr6	95271579	95271580	chr6:95271580:G:T	rs36162534	G	T	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr6	95357216	95357217	chr6:95357217:C:T	rs36156302	C	T	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr6	95366232	95366233	chr6:95366233:C:G	rs878985639	C	G	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr6	95508562	95508563	chr6:95508563:G:T	rs10872023	G	T	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr6	95629204	95629205	chr6:95629205:G:A	rs144528336	G	A	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr6	95967884	95967885	chr6:95967885:T:C	rs12215840	T	C	T	Sox3.mouse_HMG_1	11	1	+	2.8424190803175273	-3.2150370286428247	AACCAAGAATATTGTAT
chr6	97778240	97778241	chr6:97778241:T:C	rs13195190	T	C	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr6	98020407	98020408	chr6:98020408:A:G	rs4131042	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr6	98626371	98626372	chr6:98626372:C:A	rs74670105	C	A	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr6	98639140	98639141	chr6:98639141:C:T	rs62422276	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr6	98825853	98825854	chr6:98825854:C:G	rs2014442	C	G	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr6	98978032	98978033	chr6:98978033:G:C	rs151201882	G	C	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr6	99119622	99119623	chr6:99119623:C:G	rs768728836	C	G	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr6	99119627	99119628	chr6:99119628:C:T	rs150820849	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr6	99574248	99574249	chr6:99574249:G:A	rs1590359	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr6	100087926	100087927	chr6:100087927:T:A	rs2474261	T	A	a	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr6	100376371	100376372	chr6:100376372:T:G	rs1054013029	T	G	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr6	100376373	100376374	chr6:100376374:G:A	rs12202773	G	A	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr6	100506887	100506888	chr6:100506888:T:G	rs549308371	T	G	T	Sox3.mouse_HMG_1	16	1	+	2.905227428831739	1.9393757880746267	AAGAAATTCCATTGTAT
chr6	100800296	100800297	chr6:100800297:T:C	rs41288435	T	C	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr6	100810000	100810001	chr6:100810001:A:G	rs9399694	A	G	A	Sox3.mouse_HMG_1	14	1	-	1.7428710980748394	-4.367019817173867	AAACCATGGTATTATGT
chr6	101183758	101183759	chr6:101183759:G:A	rs80194065	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr6	101428872	101428873	chr6:101428873:A:C	rs72957648	A	C	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr6	101445859	101445860	chr6:101445860:A:G	rs111561159	A	G	A	Sox3.mouse_HMG_1	14	1	-	2.474084719398221	-3.6358061958504866	AAACAAGGCAAGTATTT
chr6	101730856	101730857	chr6:101730857:G:A	rs9322604	G	A	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr6	101909255	101909256	chr6:101909256:A:T	rs9377321	A	T	A	Sox3.mouse_HMG_1	6	1	-	5.2227867421235885	-1.6856682919728208	TAACAATAATCATGTTT
chr6	101911031	101911032	chr6:101911032:A:G	rs1475920	A	G	A	Sox3.mouse_HMG_1	1	1	-	3.71409385360532	2.9665778836184105	ATACAAATGCAGTGTTT
chr6	101993127	101993128	chr6:101993128:C:G	rs7771009	C	G	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr6	102603863	102603864	chr6:102603864:G:T	rs4320376	G	T	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr6	102603899	102603900	chr6:102603900:C:G	rs4594955	C	G	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr6	103532835	103532836	chr6:103532836:C:A	rs148052274	C	A	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	103622703	103622704	chr6:103622704:T:C	rs9404448	T	C	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr6	103649243	103649244	chr6:103649244:T:C	rs9654623	T	C	T	Sox3.mouse_HMG_1	5	1	-	11.37390675982064	4.6477732825181866	AAACAATGGTATTTTTA
chr6	103992232	103992233	chr6:103992233:T:C	rs2142648	T	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr6	104046413	104046414	chr6:104046414:G:A	rs36003140	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr6	104215364	104215365	chr6:104215365:T:C	rs11156373	T	C	T	Sox3.mouse_HMG_1	11	1	+	3.748794345003087	-2.3086617639572657	AGACTATATTATTGTAG
chr6	104809108	104809109	chr6:104809109:T:C	rs73768821	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr6	104843536	104843537	chr6:104843537:A:G	rs2499658	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr6	105076613	105076614	chr6:105076614:G:T	rs13211658	G	T	G	Sox3.mouse_HMG_1	3	1	-	6.229406055195482	-0.49530740766821646	CAACAAAAAAAGTGTTA
chr6	105272662	105272663	chr6:105272663:G:C	rs1772203	G	C	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr6	105436725	105436726	chr6:105436726:A:G	rs10440860	A	G	A	Sox3.mouse_HMG_1	12	1	-	2.051758329684645	-4.154707255533207	GAAAAATGCTATTGATC
chr6	105665268	105665269	chr6:105665269:G:A	rs13215959	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr6	105804540	105804541	chr6:105804541:G:A	rs1876556	G	A	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr6	106116360	106116361	chr6:106116361:A:G	rs533733	A	G	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr6	106189699	106189700	chr6:106189700:C:T	rs6920944	C	T	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr6	106445417	106445418	chr6:106445418:T:C	rs927014	T	C	T	Sox3.mouse_HMG_1	11	1	+	3.511199620944424	-2.546256488015929	GAAAAATGGTATGGTTG
chr6	106614311	106614312	chr6:106614312:T:C	rs17067443	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr6	106621534	106621535	chr6:106621535:T:C	rs55832745	T	C	T	Sox3.mouse_HMG_1	7	1	-	3.2233103934521647	3.7193807132294756	AAAAAATATCTGTGTTT
chr6	106746920	106746921	chr6:106746921:G:C	rs539290940	G	C	G	Sox3.mouse_HMG_1	14	1	+	0.3004138678983656	0.6171722044316559	AAACAATGCCTTTGGGG
chr6	106804243	106804244	chr6:106804244:G:T	rs3127640	G	T	T	Sox3.mouse_HMG_1	3	1	-	5.500917794328355	-1.2237956685353444	AAACAACAAAATTATTT
chr6	107147020	107147021	chr6:107147021:G:A	rs9486536	G	A	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr6	107443657	107443658	chr6:107443658:G:A	rs12202734	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr6	107540725	107540726	chr6:107540726:G:A	rs79596750	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr6	107689370	107689371	chr6:107689371:T:C	rs9372165	T	C	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr6	107787255	107787256	chr6:107787256:A:G	rs558686485	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr6	107807620	107807621	chr6:107807621:A:G	rs74943503	A	G	A	Sox3.mouse_HMG_1	12	1	-	8.461644364822662	2.255178779604811	TGACAATAACATTGTAA
chr6	108068073	108068074	chr6:108068074:G:C	rs9400194	G	C	G	Sox3.mouse_HMG_1	0	1	-	1.5737431212907733	1.7905179681814332	CAACACTGGCAGTATTG
chr6	108133232	108133233	chr6:108133233:A:G	rs218289	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr6	108729174	108729175	chr6:108729175:G:T	rs9486940	G	T	g	Sox3.mouse_HMG_1	3	1	-	4.653973367531592	-2.070740095332106	TAACAATGCTATTAATG
chr6	108765464	108765465	chr6:108765465:G:A	rs518460	G	A	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr6	108834982	108834983	chr6:108834983:A:G	rs34351253	A	G	A	Sox3.mouse_HMG_1	14	1	-	3.7329528071344487	-2.3769381081142584	TAGCAATTCTATTTTTG
chr6	108835305	108835306	chr6:108835306:C:T	rs75037346	C	T	C	Sox3.mouse_HMG_1	2	1	-	3.6628863262821874	8.07082130526265	CAGCATTTCCATTGTTG
chr6	109010305	109010306	chr6:109010306:C:A	rs67804469	C	A	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr6	109015413	109015414	chr6:109015414:A:G	rs117412830	A	G	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr6	109768873	109768874	chr6:109768874:T:G	rs56009458	T	G	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr6	110021556	110021557	chr6:110021557:A:G	rs7763290	A	G	G	Sox3.mouse_HMG_1	2	1	-	6.081816678856261	5.5585685350917124	TATCAATTCCAGTGTTA
chr6	110513078	110513079	chr6:110513079:G:C	rs11153242	G	C	G	Sox3.mouse_HMG_1	0	1	+	3.3229507747284304	3.1061759278377705	GAACATTTGGATTGTTT
chr6	110866793	110866794	chr6:110866794:T:C	rs144389507	T	C	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr6	110876579	110876580	chr6:110876580:A:G	rs1028207658	A	G	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr6	110876595	110876596	chr6:110876596:G:A	rs12212810	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	111416672	111416673	chr6:111416673:C:T	rs185237952	C	T	C	Sox3.mouse_HMG_1	7	1	-	5.205309900023863	4.709239580246552	ATACAATGCTTGTGTTT
chr6	111485148	111485149	chr6:111485149:G:A	rs17510346	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr6	111604241	111604242	chr6:111604242:G:T	rs112636222	G	T	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr6	111604247	111604248	chr6:111604248:G:C	rs113494021	G	C	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr6	111747873	111747874	chr6:111747874:C:T	rs12525113	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr6	111759174	111759175	chr6:111759175:C:T	rs757390980	C	T	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr6	111810435	111810436	chr6:111810436:C:T	rs1244477954	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr6	111810444	111810445	chr6:111810445:T:C	rs9481193	T	C	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr6	111833040	111833041	chr6:111833041:A:T	rs7761265	A	T	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr6	111852875	111852876	chr6:111852876:T:C	rs111655883	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.4180717989046863	-3.6918191163440213	AAACGATGTCATAGTGT
chr6	111909074	111909075	chr6:111909075:C:T	rs9487745	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr6	112156941	112156942	chr6:112156942:G:T	rs12200170	G	T	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr6	112204708	112204709	chr6:112204709:G:A	rs3777927	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr6	112214880	112214881	chr6:112214881:A:G	rs189545465	A	G	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr6	112216772	112216773	chr6:112216773:T:C	rs57283028	T	C	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr6	112216812	112216813	chr6:112216813:C:T	rs191420018	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr6	112626514	112626515	chr6:112626515:T:G	rs12190071	T	G	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr6	112806452	112806453	chr6:112806453:G:A	rs3862840	G	A	G	Sox3.mouse_HMG_1	11	1	+	7.029033180060466	3.294555753014719	AAGCAATAATAGTATTT
chr6	113104072	113104073	chr6:113104073:G:A	rs7770367	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr6	113306773	113306774	chr6:113306774:T:A	rs1029577053	T	A	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr6	113384961	113384962	chr6:113384962:G:A	rs559486	G	A	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr6	113450071	113450072	chr6:113450072:A:G	rs9320456	A	G	A	Sox3.mouse_HMG_1	10	1	+	7.265235535765038	0.35699037679369877	TAACAATGCTATTGAAG
chr6	113611589	113611590	chr6:113611590:C:T	rs75121165	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr6	113611607	113611608	chr6:113611608:C:T	chr6:113611608:C:T	C	T	C	Sox3.mouse_HMG_1	8	1	-	3.132730337337782	4.159143812348417	GCAGAATGGCAGTGTTT
chr6	113776890	113776891	chr6:113776891:T:C	rs9481398	T	C	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr6	114007859	114007860	chr6:114007860:A:G	rs6568825	A	G	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr6	114032900	114032901	chr6:114032901:C:T	rs115597117	C	T	c	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr6	114107556	114107557	chr6:114107557:C:G	rs7772231	C	G	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr6	114181643	114181644	chr6:114181644:A:G	rs9481426	A	G	A	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr6	114334534	114334535	chr6:114334535:T:C	rs785137	T	C	C	Sox3.mouse_HMG_1	12	1	+	2.8626459309802605	-3.343819654237591	CAACAGTGGTCTTGTTA
chr6	114793717	114793718	chr6:114793718:G:C	rs4295513	G	C	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr6	115483761	115483762	chr6:115483762:T:C	rs11153568	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr6	115553518	115553519	chr6:115553519:C:T	rs113310598	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr6	115948762	115948763	chr6:115948763:T:C	rs13217772	T	C	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr6	116152770	116152771	chr6:116152771:T:C	rs973490520	T	C	C	Sox3.mouse_HMG_1	5	1	-	2.4840839042427203	-4.242049573059735	GAACTATATTAGAGTTG
chr6	116218417	116218418	chr6:116218418:T:A	chr6:116218418:T:A	T	A	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr6	116288058	116288059	chr6:116288059:T:C	rs62423803	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr6	116511534	116511535	chr6:116511535:G:T	chr6:116511535:G:T	G	T	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr6	116530743	116530744	chr6:116530744:C:A	rs9387418	C	A	C	Sox3.mouse_HMG_1	9	1	+	1.8102697781634198	0.3566253913343202	TAACAAAGACAGTTTTG
chr6	116948886	116948887	chr6:116948887:T:C	rs1334659	T	C	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr6	117974927	117974928	chr6:117974928:A:G	rs75706782	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.265335361093698	-3.380755408535222	ATACAATGCAAGTTTTG
chr6	118298866	118298867	chr6:118298867:T:A	rs283067	T	A	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr6	118344726	118344727	chr6:118344727:T:G	rs2483918	T	G	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr6	118558422	118558423	chr6:118558423:G:T	rs1288839	G	T	G	Sox3.mouse_HMG_1	7	1	+	2.1822236078692203	0.6446745031270651	TAAAAATGGTTTTGTTA
chr6	118764914	118764915	chr6:118764915:C:T	rs574822436	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr6	118893359	118893360	chr6:118893360:A:G	rs147109562	A	G	a	Sox3.mouse_HMG_1	15	1	-	3.144962640144376	-1.157539157651107	AGAAAATGGAAGTGTTA
chr6	118893373	118893374	chr6:118893374:C:T	rs148150280	C	T	C	Sox3.mouse_HMG_1	1	1	-	3.144962640144376	7.4723959835470675	AGAAAATGGAAGTGTTA
chr6	118932516	118932517	chr6:118932517:G:A	rs9320671	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr6	119258443	119258444	chr6:119258444:T:C	rs2299879	T	C	T	Sox3.mouse_HMG_1	0	1	+	4.168790344474508	4.6023531574385546	TAGCAATGACATTATAT
chr6	119303726	119303727	chr6:119303727:G:A	rs1884180	G	A	G	Sox3.mouse_HMG_1	3	1	-	0.6178603959968285	-5.364915722137494	CAACAATAGCTGGGTTG
chr6	119447097	119447098	chr6:119447098:C:T	rs12208590	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr6	119814741	119814742	chr6:119814742:T:C	rs9374834	T	C	T	Sox3.mouse_HMG_1	7	1	-	3.8685440672616167	4.364614387038928	GAACAAAATAATTGATT
chr6	120097106	120097107	chr6:120097107:T:C	rs1359016	T	C	C	Sox3.mouse_HMG_1	12	1	+	9.278767059911301	3.0723014746934494	AAACAAATGAATTGTTT
chr6	120393247	120393248	chr6:120393248:G:A	rs3013716	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr6	120805335	120805336	chr6:120805336:C:T	rs2789074	C	T	T	Sox3.mouse_HMG_1	11	1	-	2.0711333234914275	-1.6633441035543195	GAACAATGTAAGTAATG
chr6	121114923	121114924	chr6:121114924:A:G	rs13199297	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr6	121347934	121347935	chr6:121347935:T:C	rs113393538	T	C	t	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr6	121488303	121488304	chr6:121488304:G:A	rs4946572	G	A	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr6	121523204	121523205	chr6:121523205:C:A	rs4143301	C	A	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr6	121523228	121523229	chr6:121523229:G:A	rs115147666	G	A	G	Sox3.mouse_HMG_1	9	1	-	3.222264003946396	3.1865578790618274	TAACAGTGTCAGTGATT
chr6	121563305	121563306	chr6:121563306:A:G	rs117230201	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	121639153	121639154	chr6:121639154:G:T	rs4419694	G	T	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr6	122196550	122196551	chr6:122196551:A:G	rs9401497	A	G	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr6	122350996	122350997	chr6:122350997:C:A	rs9482237	C	A	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr6	122381560	122381561	chr6:122381561:G:A	rs6924006	G	A	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr6	122654812	122654813	chr6:122654813:A:G	rs12205720	A	G	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr6	122793617	122793618	chr6:122793618:A:C	rs142451851	A	C	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr6	122999632	122999633	chr6:122999633:A:G	rs11154134	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr6	122999667	122999668	chr6:122999668:A:C	rs11154135	A	C	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr6	123393510	123393511	chr6:123393511:G:T	rs73771940	G	T	G	Sox3.mouse_HMG_1	0	1	-	3.484440965858302	5.074032478210501	CAAAAAAAATATTGTTG
chr6	123393511	123393512	chr6:123393512:C:T	rs73771941	C	T	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr6	123439273	123439274	chr6:123439274:T:C	rs9490752	T	C	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr6	123777797	123777798	chr6:123777798:A:C	rs530160	A	C	A	Sox3.mouse_HMG_1	8	1	+	4.34771470499632	3.2151542416172445	TAACTATAATATAGTTA
chr6	123869742	123869743	chr6:123869743:A:G	rs6924068	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr6	123897328	123897329	chr6:123897329:T:C	rs12208734	T	C	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr6	123925331	123925332	chr6:123925332:G:A	rs145972159	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr6	124028238	124028239	chr6:124028239:G:T	rs17086515	G	T	T	Sox3.mouse_HMG_1	9	1	-	10.211545527008832	8.757901140179733	GAAAAATAACATTGTTA
chr6	124125974	124125975	chr6:124125975:C:T	rs163294	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr6	124291574	124291575	chr6:124291575:T:G	rs2753150	T	G	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr6	124310309	124310310	chr6:124310310:T:C	rs932600	T	C	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr6	124371408	124371409	chr6:124371409:G:A	rs2208814	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr6	124389345	124389346	chr6:124389346:T:C	rs17051780	T	C	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr6	124416953	124416954	chr6:124416954:A:C	rs487242	A	C	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr6	125314545	125314546	chr6:125314546:T:G	rs9491388	T	G	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr6	125340885	125340886	chr6:125340886:T:C	rs1417698	T	C	T	Sox3.mouse_HMG_1	15	1	+	4.394672672408677	0.09217087461319395	CAACAATAATAATGGTA
chr6	125779409	125779410	chr6:125779410:C:A	rs1739386	C	A	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr6	125872672	125872673	chr6:125872673:A:G	rs112877312	A	G	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr6	126228171	126228172	chr6:126228172:G:C	rs150386077	G	C	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr6	126645161	126645162	chr6:126645162:T:C	rs4549631	T	C	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr6	126723623	126723624	chr6:126723624:T:A	rs853980	T	A	T	Sox3.mouse_HMG_1	12	1	+	6.946839876276802	1.358647802643692	AAACAATGGCAATTTTT
chr6	127483943	127483944	chr6:127483944:A:G	rs1512449	A	G	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr6	127716851	127716852	chr6:127716852:G:A	rs146442272	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr6	127773926	127773927	chr6:127773927:A:G	rs391948	A	G	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr6	127773927	127773928	chr6:127773928:T:C	rs377764	T	C	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr6	127863592	127863593	chr6:127863593:T:C	rs270041	T	C	T	Sox3.mouse_HMG_1	6	1	+	5.979400185633027	-0.6666905839958909	AAACAATTGGAGTGTAT
chr6	128518324	128518325	chr6:128518325:G:A	rs6923822	G	A	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr6	128710136	128710137	chr6:128710137:A:T	rs141254550	A	T	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr6	128731935	128731936	chr6:128731936:G:A	rs6569556	G	A	A	Sox3.mouse_HMG_1	0	1	-	4.627841619647166	4.19427880668312	CAGCAGTGAAATTGTTA
chr6	129073246	129073247	chr6:129073247:C:T	rs7751105	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr6	129104418	129104419	chr6:129104419:A:C	rs9388686	A	C	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr6	129135529	129135530	chr6:129135530:A:G	rs757304589	A	G	A	Sox3.mouse_HMG_1	9	1	-	4.864063509965577	4.899769634850147	AAACAATAGTAGTTATT
chr6	129141036	129141037	chr6:129141037:A:G	rs59319869	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr6	129141089	129141090	chr6:129141090:C:G	rs115229304	C	G	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr6	129292745	129292746	chr6:129292746:T:G	rs4257879	T	G	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr6	129318408	129318409	chr6:129318409:C:T	chr6:129318409:C:T	C	T	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr6	129318411	129318412	chr6:129318412:C:T	rs113995977	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr6	129565742	129565743	chr6:129565743:A:T	rs77357380	A	T	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	129672749	129672750	chr6:129672750:G:T	rs13203608	G	T	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr6	129703483	129703484	chr6:129703484:A:G	rs6917887	A	G	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr6	129753506	129753507	chr6:129753507:C:T	rs487145	C	T	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr6	129786293	129786294	chr6:129786294:T:C	rs9492372	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr6	130076867	130076868	chr6:130076868:T:A	rs7756733	T	A	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr6	130113108	130113109	chr6:130113109:G:A	rs6934316	G	A	A	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr6	130245536	130245537	chr6:130245537:C:T	rs55737947	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	130245542	130245543	chr6:130245543:A:G	rs9492501	A	G	a	Sox3.mouse_HMG_1	16	1	-	5.883276028224574	2.281479362603592	GTGCAATAGCAGTGTTT
chr6	130418355	130418356	chr6:130418356:A:C	rs12190331	A	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr6	130437977	130437978	chr6:130437978:C:G	rs10456986	C	G	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr6	130598324	130598325	chr6:130598325:A:G	rs145275245	A	G	A	Sox3.mouse_HMG_1	5	1	+	8.065850974691125	1.339717497388673	AAACAATGCCATTGCAA
chr6	130598326	130598327	chr6:130598327:G:C	rs77437540	G	C	G	Sox3.mouse_HMG_1	7	1	+	8.065850974691125	2.4451588397663553	AAACAATGCCATTGCAA
chr6	130620817	130620818	chr6:130620818:T:C	rs12662540	T	C	T	Sox3.mouse_HMG_1	8	1	+	4.060173773486269	3.7474345485757263	AAATAATTTTATTTTTA
chr6	130827722	130827723	chr6:130827723:A:T	rs9388856	A	T	A	Sox3.mouse_HMG_1	12	1	-	1.6569710023954585	-3.931221071237653	AAACACTGACAGTGCAT
chr6	131003657	131003658	chr6:131003658:T:C	rs56059620	T	C	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr6	131427488	131427489	chr6:131427489:C:T	rs140895375	C	T	C	Sox3.mouse_HMG_1	13	1	-	2.4051271541108967	-3.702978635915019	GAAAAATTAGAGTGTTT
chr6	131427493	131427494	chr6:131427494:T:C	rs7750184	T	C	T	Sox3.mouse_HMG_1	8	1	-	2.4051271541108967	1.3787136791002612	GAAAAATTAGAGTGTTT
chr6	131556520	131556521	chr6:131556521:T:C	rs2608977	T	C	T	Sox3.mouse_HMG_1	5	1	-	4.6009381212536615	-2.1251953560487906	AAACAATTAAAGAGTAA
chr6	131586747	131586748	chr6:131586748:C:T	rs41285340	C	T	C	Sox3.mouse_HMG_1	11	1	+	1.9585527460368533	8.016008854997205	AAACAATCACACGGTTT
chr6	131989269	131989270	chr6:131989270:G:A	rs233915	G	A	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr6	131989284	131989285	chr6:131989285:T:C	rs9402380	T	C	T	Sox3.mouse_HMG_1	10	1	-	3.266511029215968	-3.6417341297553714	AAAAAATTCTATTATTA
chr6	132168816	132168817	chr6:132168817:A:G	rs12198407	A	G	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr6	132333691	132333692	chr6:132333692:C:T	rs11968833	C	T	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr6	132362622	132362623	chr6:132362623:T:C	rs17061202	T	C	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr6	132712473	132712474	chr6:132712474:T:C	chr6:132712474:T:C	T	C	T	Sox3.mouse_HMG_1	13	1	-	1.3849284601941299	7.493034250220045	CAACAATGGCAGGATTA
chr6	132798323	132798324	chr6:132798324:T:C	rs184431726	T	C	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr6	132798360	132798361	chr6:132798361:C:A	rs999973268	C	A	c	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr6	132814693	132814694	chr6:132814694:A:G	rs888345218	A	G	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr6	132814724	132814725	chr6:132814725:T:G	rs12202302	T	G	T	Sox3.mouse_HMG_1	1	1	-	2.185911085214671	-3.4519438110464415	AAACAAAAGCATTGACT
chr6	133040227	133040228	chr6:133040228:C:T	rs184222634	C	T	C	Sox3.mouse_HMG_1	2	1	-	4.817917720658697	9.225852699639155	AAGCAATTGTAGTGATG
chr6	133137022	133137023	chr6:133137023:A:G	rs7756963	A	G	G	Sox3.mouse_HMG_1	2	1	+	10.236206918892732	5.828271939912271	GAACAACAAAATTGTTT
chr6	133265286	133265287	chr6:133265287:G:A	rs7745129	G	A	g	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr6	133313243	133313244	chr6:133313244:C:T	rs55977000	C	T	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr6	133788706	133788707	chr6:133788707:A:G	chr6:133788707:A:G	A	G	a	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr6	134003756	134003757	chr6:134003757:T:C	rs190985588	T	C	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr6	134003771	134003772	chr6:134003772:G:A	rs9375999	G	A	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr6	134003890	134003891	chr6:134003891:G:A	rs9376000	G	A	A	Sox3.mouse_HMG_1	13	1	+	3.588364408540582	-2.5197413814853338	AAAAAATGTTGGTGTTT
chr6	134048683	134048684	chr6:134048684:G:A	rs2811687	G	A	G	Sox3.mouse_HMG_1	14	1	-	2.0793992736373923	8.1892901888861	CAAAAATTATAGTGCTT
chr6	134053065	134053066	chr6:134053066:G:A	rs1385069	G	A	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr6	134080919	134080920	chr6:134080920:T:A	rs117972934	T	A	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr6	134333601	134333602	chr6:134333602:G:C	rs191741645	G	C	G	Sox3.mouse_HMG_1	7	1	+	10.443046554185871	4.822354419261099	AAACAAAGAAATTGTTA
chr6	134382089	134382090	chr6:134382090:A:G	rs78156561	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.9995458775134525	-1.6465448921154653	GAACAATAGCAGTGAAA
chr6	134519492	134519493	chr6:134519493:G:A	rs76792021	G	A	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr6	134524000	134524001	chr6:134524001:A:G	rs9402615	A	G	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr6	134535214	134535215	chr6:134535215:C:T	rs9389191	C	T	T	Sox3.mouse_HMG_1	9	1	+	1.9321664751666479	1.8964603502820796	AACCAATTACTTTGTAT
chr6	135514762	135514763	chr6:135514763:A:G	rs58761508	A	G	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr6	135531110	135531111	chr6:135531111:A:C	rs553800292	A	C	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr6	135600433	135600434	chr6:135600434:C:T	rs114986612	C	T	c	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr6	135921446	135921447	chr6:135921447:A:G	rs6912406	A	G	A	Sox3.mouse_HMG_1	7	1	+	4.841545293920333	5.337615613697644	AAATAATACTAGAGTTT
chr6	135921468	135921469	chr6:135921469:G:C	rs9402776	G	C	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr6	135959508	135959509	chr6:135959509:C:G	rs9389348	C	G	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr6	136051460	136051461	chr6:136051461:C:T	rs114224649	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr6	136229034	136229035	chr6:136229035:A:G	rs77310316	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr6	136716385	136716386	chr6:136716386:T:C	rs77761220	T	C	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr6	136716864	136716865	chr6:136716865:T:G	rs4896216	T	G	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	136866502	136866503	chr6:136866503:G:A	rs1884940	G	A	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr6	136962891	136962892	chr6:136962892:A:C	rs6926744	A	C	A	Sox3.mouse_HMG_1	5	1	+	1.5998188210428552	-5.2133260332492295	CAACAATCACAATGTGG
chr6	137026714	137026715	chr6:137026715:G:A	rs62420789	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr6	137427711	137427712	chr6:137427712:A:G	rs6929588	A	G	G	Sox3.mouse_HMG_1	10	1	+	1.6353540235331192	-5.272891135438219	AAACCATGGCATTGAGG
chr6	137427724	137427725	chr6:137427725:T:C	rs115177216	T	C	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr6	137495025	137495026	chr6:137495026:C:T	rs6910320	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr6	137530230	137530231	chr6:137530231:T:G	rs62434150	T	G	T	Sox3.mouse_HMG_1	6	1	+	2.5628183788723615	-4.345636655224049	CTACAATGGAAGAGTTG
chr6	137665694	137665695	chr6:137665695:C:T	rs79184826	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr6	137762827	137762828	chr6:137762828:C:T	rs77271426	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr6	137819808	137819809	chr6:137819809:A:C	rs75107996	A	C	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr6	137873903	137873904	chr6:137873904:A:G	rs629953	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr6	138049233	138049234	chr6:138049234:C:T	rs1997692	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr6	138086909	138086910	chr6:138086910:G:A	rs80163205	G	A	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr6	138157341	138157342	chr6:138157342:G:A	rs4896324	G	A	G	Sox3.mouse_HMG_1	8	1	+	3.2679042305786044	4.294317705589241	AAACCACTGTATTGTTG
chr6	138508017	138508018	chr6:138508018:A:G	rs28702636	A	G	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr6	138509682	138509683	chr6:138509683:T:G	rs115913182	T	G	T	Sox3.mouse_HMG_1	8	1	-	2.825128768180016	1.6925683048009401	AGACAAGGATATTCTTT
chr6	138645076	138645077	chr6:138645077:A:G	rs6570248	A	G	G	Sox3.mouse_HMG_1	2	1	+	4.071426071154677	-0.33650890782578535	AGACAAAATAAGTGTTT
chr6	138805834	138805835	chr6:138805835:T:C	rs6939456	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.3032723986492345	-5.422861078653222	AACCAATGATGTTGTGG
chr6	138833887	138833888	chr6:138833888:A:G	rs76478337	A	G	A	Sox3.mouse_HMG_1	7	1	+	4.993886993154244	5.489957312931555	AAGCCATAAAAGTGTTT
chr6	138943792	138943793	chr6:138943793:T:G	rs6899737	T	G	G	Sox3.mouse_HMG_1	15	1	+	5.886912408780743	1.3204935511747082	AAACAATGTCTTTGATA
chr6	138970970	138970971	chr6:138970971:T:C	rs550971836	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr6	139202216	139202217	chr6:139202217:C:T	rs115144400	C	T	C	Sox3.mouse_HMG_1	4	1	+	1.370020680616683	1.7810259691004633	GAACCATTTCAGTGATG
chr6	139241302	139241303	chr6:139241303:G:C	rs10499208	G	C	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr6	139252291	139252292	chr6:139252292:C:T	rs150695430	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr6	139364617	139364618	chr6:139364618:A:G	rs113106360	A	G	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	139501184	139501185	chr6:139501185:A:G	rs62440903	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.921693638997732	-3.80443983830472	AAACAATGGTATTTAGT
chr6	139501189	139501190	chr6:139501190:A:G	rs4895563	A	G	A	Sox3.mouse_HMG_1	10	1	+	2.921693638997732	-3.986551519973604	AAACAATGGTATTTAGT
chr6	139523291	139523292	chr6:139523292:G:A	rs590856	G	A	A	Sox3.mouse_HMG_1	8	1	+	4.006928026470699	5.033341501481335	GAAAAATGGCATTATTG
chr6	139549562	139549563	chr6:139549563:G:A	rs77843398	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr6	139549587	139549588	chr6:139549588:T:G	rs3850221	T	G	G	Sox3.mouse_HMG_1	6	1	+	2.2145288631901825	-4.693926170906226	GAACAGTTTCATGGTTG
chr6	139764157	139764158	chr6:139764158:T:C	rs7774968	T	C	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr6	139828745	139828746	chr6:139828746:A:T	rs62430239	A	T	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	139880362	139880363	chr6:139880363:C:A	rs147846348	C	A	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr6	140269778	140269779	chr6:140269779:T:A	rs80278391	T	A	T	Sox3.mouse_HMG_1	5	1	-	3.1497900470860927	-3.7586649870103175	TAGCAATTTATTTGTTT
chr6	140319567	140319568	chr6:140319568:C:T	rs79423873	C	T	C	Sox3.mouse_HMG_1	8	1	-	1.9038756012790456	2.9302890762896814	GAAGAATTGCACTGTTA
chr6	140438610	140438611	chr6:140438611:G:A	rs72979812	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr6	141028836	141028837	chr6:141028837:G:C	rs9376561	G	C	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr6	141028837	141028838	chr6:141028838:G:T	rs146245183	G	T	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr6	141265779	141265780	chr6:141265780:G:A	rs143053963	G	A	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr6	141415960	141415961	chr6:141415961:C:A	rs9385958	C	A	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr6	141415962	141415963	chr6:141415963:C:A	rs2152230	C	A	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr6	141483127	141483128	chr6:141483128:T:C	rs74331666	T	C	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr6	142361991	142361992	chr6:142361992:T:C	rs9496352	T	C	T	Sox3.mouse_HMG_1	1	1	-	2.2554593101938356	-2.0719740332088574	AAACAAATGAACTGTTG
chr6	142821787	142821788	chr6:142821788:A:G	rs529565915	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr6	142841887	142841888	chr6:142841888:A:G	rs6912129	A	G	A	Sox3.mouse_HMG_1	5	1	+	6.64969022007965	-0.0764432572228041	CAGCAATTAAATTGTGT
chr6	142886191	142886192	chr6:142886192:T:C	rs10457743	T	C	T	Sox3.mouse_HMG_1	5	1	+	3.209408020979626	3.3047182007839515	AGGCATTATTATTGTTT
chr6	142902549	142902550	chr6:142902550:T:C	rs9321879	T	C	T	Sox3.mouse_HMG_1	3	1	+	2.636709677088255	8.619485795222575	AGATAGTAATATTGTTT
chr6	142907503	142907504	chr6:142907504:A:T	rs9403420	A	T	A	Sox3.mouse_HMG_1	6	1	-	3.391126769825456	-3.5173282642709536	AAGCAATGGCTTTGTGT
chr6	143135469	143135470	chr6:143135470:T:C	rs3804535	T	C	C	Sox3.mouse_HMG_1	8	1	-	9.523429150104088	8.497015675093452	ACACAATAAAAGTGTTG
chr6	143219910	143219911	chr6:143219911:C:T	rs145597550	C	T	C	Sox3.mouse_HMG_1	7	1	-	1.1665152763364453	0.6704449565591345	TAGCAATGCCGTTGTGT
chr6	143219926	143219927	chr6:143219927:C:A	rs2876551	C	A	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr6	143268322	143268323	chr6:143268323:A:T	rs17530336	A	T	A	Sox3.mouse_HMG_1	12	1	-	1.6370351376019718	-3.951156936031139	GAACAATGCCAGTCGTA
chr6	143345294	143345295	chr6:143345295:A:T	rs6932294	A	T	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr6	143348744	143348745	chr6:143348745:C:T	rs9496595	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr6	143616917	143616918	chr6:143616918:G:C	rs13199393	G	C	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr6	143638076	143638077	chr6:143638077:G:A	rs1890403	G	A	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	143804666	143804667	chr6:143804667:A:T	rs11752084	A	T	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr6	144067469	144067470	chr6:144067470:C:T	rs140037005	C	T	-	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr6	144133266	144133267	chr6:144133267:C:A	rs1040464	C	A	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr6	144667953	144667954	chr6:144667954:G:A	rs746160444	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr6	144852006	144852007	chr6:144852007:T:G	rs9373431	T	G	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr6	144897571	144897572	chr6:144897572:G:A	rs9399520	G	A	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	144912693	144912694	chr6:144912694:A:T	rs1338698	A	T	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr6	145036213	145036214	chr6:145036214:A:C	rs17222262	A	C	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr6	145045566	145045567	chr6:145045567:A:T	rs2328630	A	T	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	145279651	145279652	chr6:145279652:C:A	rs557970	C	A	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr6	145279673	145279674	chr6:145279674:T:C	rs557229	T	C	T	Sox3.mouse_HMG_1	12	1	-	9.951526776900373	8.971590779865862	AAACAATGCTATAGTAT
chr6	145296008	145296009	chr6:145296009:A:C	rs13191080	A	C	a	Sox3.mouse_HMG_1	12	1	-	2.9082395898681193	-3.6598884807995034	TAGCATTTAAATTGTTG
chr6	146211735	146211736	chr6:146211736:T:C	rs990519	T	C	C	Sox3.mouse_HMG_1	6	1	+	4.974123928055323	-1.6719668415735933	GAACAATGGTATTTGTT
chr6	146700194	146700195	chr6:146700195:A:G	rs759035039	A	G	A	Sox3.mouse_HMG_1	12	1	-	1.0866682553849283	-5.119797329832924	CTACAAAGACAGTGTTC
chr6	146898912	146898913	chr6:146898913:C:A	rs9377035	C	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr6	146898917	146898918	chr6:146898918:A:G	rs7740261	A	G	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr6	147066012	147066013	chr6:147066013:T:C	rs73786884	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr6	147322792	147322793	chr6:147322793:A:T	rs561450709	A	T	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr6	147528904	147528905	chr6:147528905:T:C	rs77628336	T	C	T	Sox3.mouse_HMG_1	11	1	+	5.598735810678555	-0.4587202982817982	AAACAGTACCATTGATG
chr6	147622244	147622245	chr6:147622245:C:T	rs7756592	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr6	147641949	147641950	chr6:147641950:A:G	rs9497834	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr6	147740253	147740254	chr6:147740254:A:G	rs57142885	A	G	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr6	147740260	147740261	chr6:147740261:C:T	rs58592548	C	T	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr6	148367481	148367482	chr6:148367482:C:T	rs141834823	C	T	C	Sox3.mouse_HMG_1	15	1	-	1.3450152801925825	2.4145905160061467	AAACAAGAGCAATGTGT
chr6	148407720	148407721	chr6:148407721:C:T	rs78140288	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr6	148407754	148407755	chr6:148407755:C:T	rs35646636	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr6	148423469	148423470	chr6:148423470:C:T	rs114795033	C	T	C	Sox3.mouse_HMG_1	0	1	+	4.967820204745848	4.534257391781804	CAACAATAATAGTGACA
chr6	148577348	148577349	chr6:148577349:G:A	rs208702	G	A	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr6	148712581	148712582	chr6:148712582:G:A	rs6570892	G	A	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr6	148759164	148759165	chr6:148759165:T:C	rs11751562	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr6	148764851	148764852	chr6:148764852:C:T	rs113717991	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr6	148791619	148791620	chr6:148791620:T:G	rs7753810	T	G	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr6	149044290	149044291	chr6:149044291:C:A	rs12200909	C	A	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr6	149045602	149045603	chr6:149045603:G:A	rs114781579	G	A	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr6	149054579	149054580	chr6:149054580:C:G	rs13217006	C	G	G	Sox3.mouse_HMG_1	1	1	-	5.049149669552771	3.738728116694353	CGACAATAGCAGAGTTT
chr6	149078569	149078570	chr6:149078570:C:T	rs373860811	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr6	149121548	149121549	chr6:149121549:A:G	rs7766254	A	G	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr6	149154570	149154571	chr6:149154571:C:T	rs73779024	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr6	149171544	149171545	chr6:149171545:A:G	rs1448087734	A	G	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	149171547	149171548	chr6:149171548:G:C	rs11155628	G	C	g	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr6	149177246	149177247	chr6:149177247:A:G	rs7751665	A	G	G	Sox3.mouse_HMG_1	11	1	-	1.9108101466108263	-4.146645962349527	AAGCAATTGGATTGATT
chr6	149334775	149334776	chr6:149334776:A:G	rs532008	A	G	A	Sox3.mouse_HMG_1	10	1	+	6.391286862668505	-0.5169582963028339	GAACAAGGACATTGTGG
chr6	149477229	149477230	chr6:149477230:C:G	rs444784	C	G	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr6	149477241	149477242	chr6:149477242:C:T	rs571070879	C	T	C	Sox3.mouse_HMG_1	3	1	+	4.156652724938737	-1.8261233931955863	TAACAATGGCAGGGTCT
chr6	150273226	150273227	chr6:150273227:T:C	rs789481	T	C	C	Sox3.mouse_HMG_1	10	1	-	7.856889493308106	0.9486443343367692	AAGCAATGATATTGTCC
chr6	150814248	150814249	chr6:150814249:A:G	rs79102053	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	151060075	151060076	chr6:151060076:C:T	rs147917720	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr6	151060120	151060121	chr6:151060121:C:T	rs112739100	C	T	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr6	151125898	151125899	chr6:151125899:C:A	rs60569714	C	A	C	Sox3.mouse_HMG_1	7	1	-	1.1112721277483901	-0.42627697699376516	CAACAAGGCCAGTTTTG
chr6	151254808	151254809	chr6:151254809:C:T	rs17080959	C	T	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr6	151254815	151254816	chr6:151254816:A:G	rs187019384	A	G	A	Sox3.mouse_HMG_1	5	1	+	5.6135894590483195	-1.1125440182541366	CAACAATGACAGAGATT
chr6	151254821	151254822	chr6:151254822:G:C	rs12195960	G	C	G	Sox3.mouse_HMG_1	11	1	+	5.6135894590483195	1.6841120169488475	CAACAATGACAGAGATT
chr6	151299453	151299454	chr6:151299454:A:G	rs9383565	A	G	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr6	151310953	151310954	chr6:151310954:A:G	rs2473611	A	G	G	Sox3.mouse_HMG_1	11	1	+	2.880420358243732	6.614897785289479	AGACAATGGCAATCTTT
chr6	151551312	151551313	chr6:151551313:G:T	rs9479068	G	T	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr6	151551364	151551365	chr6:151551365:T:C	rs9371537	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr6	151583989	151583990	chr6:151583990:C:T	rs56722032	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr6	151699254	151699255	chr6:151699255:A:C	rs851985	A	C	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr6	152299646	152299647	chr6:152299647:T:C	rs17216894	T	C	T	Sox3.mouse_HMG_1	6	1	+	4.207591003874622	-2.4384997657542975	GAACAGTGTAAGTGTAT
chr6	152461492	152461493	chr6:152461493:C:T	rs506181	C	T	T	Sox3.mouse_HMG_1	12	1	+	4.167741561009174	10.374207146227027	AAACAAAAGCATCGTTA
chr6	152566410	152566411	chr6:152566411:T:C	rs9384012	T	C	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr6	152576086	152576087	chr6:152576087:T:G	rs1407484	T	G	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr6	152746791	152746792	chr6:152746792:G:A	rs17083008	G	A	A	Sox3.mouse_HMG_1	3	1	-	7.042086322053186	1.0593102039188655	GAACAATGCAAGTGCTG
chr6	152948646	152948647	chr6:152948647:T:A	rs9384055	T	A	A	Sox3.mouse_HMG_1	12	1	+	3.6782496230061055	-1.9099424506270057	GGATAATATCAGTGTTA
chr6	153948316	153948317	chr6:153948317:T:A	rs508654	T	A	T	Sox3.mouse_HMG_1	16	1	-	2.7456848505991394	4.145367936077359	CAACAATCGAATTTTTA
chr6	154288038	154288039	chr6:154288039:C:T	rs7753809	C	T	c	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr6	154458084	154458085	chr6:154458085:C:T	rs114004899	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr6	154914432	154914433	chr6:154914433:G:A	rs9371354	G	A	A	Sox3.mouse_HMG_1	6	1	-	3.759665872753329	10.405756642382245	GAACAACTCAATTGTCT
chr6	155050378	155050379	chr6:155050379:T:C	rs9322495	T	C	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	155188766	155188767	chr6:155188767:A:G	rs189457288	A	G	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr6	155471398	155471399	chr6:155471399:C:G	rs7774182	C	G	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr6	155473002	155473003	chr6:155473003:A:G	rs73567391	A	G	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr6	155524098	155524099	chr6:155524099:T:C	rs6557431	T	C	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr6	155985830	155985831	chr6:155985831:C:T	rs4628110	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr6	156161791	156161792	chr6:156161792:T:C	rs7763392	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	156516320	156516321	chr6:156516321:T:C	rs117577781	T	C	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr6	156828795	156828796	chr6:156828796:T:C	rs9480393	T	C	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr6	156886387	156886388	chr6:156886388:T:C	rs9397981	T	C	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr6	156999797	156999798	chr6:156999798:T:G	rs11156129	T	G	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr6	157004840	157004841	chr6:157004841:T:C	rs17054622	T	C	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr6	157047006	157047007	chr6:157047007:T:G	rs17088057	T	G	T	Sox3.mouse_HMG_1	14	1	+	3.1679768190928583	-3.258672432689139	CAGCAATGCCTGTGTTG
chr6	157230851	157230852	chr6:157230852:T:G	rs148079503	T	G	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr6	157324284	157324285	chr6:157324285:T:C	rs587719451	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr6	157613947	157613948	chr6:157613948:C:A	rs3933566	C	A	C	Sox3.mouse_HMG_1	3	1	+	2.6070527796120713	-4.117660683251633	TGACAGTTTTAGTGTTT
chr6	157613977	157613978	chr6:157613978:G:A	rs4634489	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr6	157748922	157748923	chr6:157748923:C:T	rs7742219	C	T	C	Sox3.mouse_HMG_1	7	1	-	5.130814027418132	4.634743707640821	GAGCCATGCTATTGTTA
chr6	157795826	157795827	chr6:157795827:A:C	rs2803363	A	C	C	Sox3.mouse_HMG_1	4	1	+	4.755995390979434	-1.9693183240081729	GTACAATTTCAATGTTG
chr6	157873707	157873708	chr6:157873708:T:A	chr6:157873708:T:A	T	A	T	Sox3.mouse_HMG_1	4	1	-	7.013710314373871	0.6994018878700474	AAACAATATTATAGATG
chr6	158015768	158015769	chr6:158015769:A:G	rs9365726	A	G	A	Sox3.mouse_HMG_1	11	1	-	3.539552538947218	-2.517903570013135	AAAAAATGTTATAGTAT
chr6	158073535	158073536	chr6:158073536:G:A	rs9459298	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr6	158119535	158119536	chr6:158119536:G:A	rs9364802	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	158257471	158257472	chr6:158257472:A:G	rs6920121	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr6	158286643	158286644	chr6:158286644:A:G	chr6:158286644:A:G	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr6	158414855	158414856	chr6:158414856:G:C	rs341156	G	C	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr6	158654375	158654376	chr6:158654376:G:T	rs9457424	G	T	G	Sox3.mouse_HMG_1	16	1	+	1.3142845301428334	2.280136170899946	CAATAAAATCAGTGTTG
chr6	158691614	158691615	chr6:158691615:A:G	rs148402073	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr6	158764351	158764352	chr6:158764352:T:C	rs7762579	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr6	158921272	158921273	chr6:158921273:A:T	rs9355687	A	T	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	158972178	158972179	chr6:158972179:G:A	rs2235823	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr6	159004703	159004704	chr6:159004704:A:G	rs187659570	A	G	A	Sox3.mouse_HMG_1	4	1	+	6.23249490978484	-0.5798301821923982	AAGTAATGAAAGTGTTT
chr6	159041642	159041643	chr6:159041643:C:G	rs74604311	C	G	C	Sox3.mouse_HMG_1	13	1	-	0.9228567591908017	-5.185249030835114	GAAAAATAGCAGGGTTG
chr6	159085744	159085745	chr6:159085745:G:C	rs9355259	G	C	G	Sox3.mouse_HMG_1	3	1	+	3.057758396360842	9.964793416018493	TAAGAATAGCAGTGTGT
chr6	159152015	159152016	chr6:159152016:G:A	rs543368	G	A	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr6	159153461	159153462	chr6:159153462:C:T	rs2451252	C	T	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr6	159316909	159316910	chr6:159316910:G:A	rs117664822	G	A	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr6	159401107	159401108	chr6:159401108:C:T	rs9295098	C	T	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr6	159691605	159691606	chr6:159691606:A:G	rs5746105	A	G	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr6	159691636	159691637	chr6:159691637:C:T	rs2842959	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr6	159718928	159718929	chr6:159718929:G:A	rs4709363	G	A	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	159847341	159847342	chr6:159847342:A:G	rs1004252	A	G	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr6	160034805	160034806	chr6:160034806:A:G	rs192860863	A	G	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr6	160096855	160096856	chr6:160096856:C:T	rs998203	C	T	T	Sox3.mouse_HMG_1	0	1	+	6.348608628575409	5.9150458156113634	CAGCAGTGCCATTGTTT
chr6	160146895	160146896	chr6:160146896:G:T	rs3798167	G	T	G	Sox3.mouse_HMG_1	13	1	+	11.832534609194665	5.46341499379913	AAACAATTCCATTGTCA
chr6	160198778	160198779	chr6:160198779:G:C	rs150972629	G	C	G	Sox3.mouse_HMG_1	6	1	+	4.355250505340226	4.617614769807717	AAACACGGACAGTGTTT
chr6	160240425	160240426	chr6:160240426:T:C	rs315989	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.73064179067112	-3.379249124577587	CAACATTATCAGTGTGG
chr6	160279866	160279867	chr6:160279867:T:C	rs604258	T	C	T	Sox3.mouse_HMG_1	0	1	-	2.1091795896584347	0.7363629241968954	ACACAATGACATCGATG
chr6	160883209	160883210	chr6:160883210:A:T	rs62435349	A	T	a	Sox3.mouse_HMG_1	5	1	+	3.9982396800665194	-2.91021535402989	AACCAATGTAATTCTTA
chr6	161075930	161075931	chr6:161075931:G:A	rs71565788	G	A	G	Sox3.mouse_HMG_1	11	1	+	9.852503801386467	6.118026374340721	AAACAAAATCAGTGTTT
chr6	161512017	161512018	chr6:161512018:T:C	rs6927018	T	C	C	Sox3.mouse_HMG_1	4	1	-	2.739129239501516	-4.07319585247572	CAACAATGTAGGTGTGT
chr6	161832667	161832668	chr6:161832668:G:A	rs11962503	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr6	162156225	162156226	chr6:162156226:C:T	rs2849609	C	T	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr6	162326768	162326769	chr6:162326769:C:T	rs7776148	C	T	T	Sox3.mouse_HMG_1	11	1	-	3.292505557526267	-0.44197186951947964	AATCTATGCTAGTGTTA
chr6	162390869	162390870	chr6:162390870:A:G	rs10945826	A	G	a	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr6	162615081	162615082	chr6:162615082:G:C	chr6:162615082:G:C	G	C	G	Sox3.mouse_HMG_1	1	1	-	3.8926259966752834	5.203047549533704	GCACATTTTTATTGTTT
chr6	162814456	162814457	chr6:162814457:A:G	rs190330943	A	G	A	Sox3.mouse_HMG_1	5	1	+	4.619680191126602	-2.1064532861758534	TAACAATTAAATTATAG
chr6	163183899	163183900	chr6:163183900:G:A	rs2763996	G	A	A	Sox3.mouse_HMG_1	8	1	-	1.8485992207312063	2.1613384456417486	AAACCAAACCAGTGTTG
chr6	163352360	163352361	chr6:163352361:A:G	rs9347742	A	G	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr6	163419496	163419497	chr6:163419497:A:G	rs2784867	A	G	G	Sox3.mouse_HMG_1	16	1	-	2.0798754705631715	-1.5219211950578109	AAGCAATATCTTAGTTT
chr6	163423359	163423360	chr6:163423360:T:C	rs2759386	T	C	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr6	164037233	164037234	chr6:164037234:T:C	rs2070284	T	C	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr6	164037254	164037255	chr6:164037255:T:C	rs2070286	T	C	T	Sox3.mouse_HMG_1	6	1	+	4.375208766558047	-2.270882003070871	AAACAATGCATGTGTCT
chr6	164045464	164045465	chr6:164045465:T:C	rs2064792	T	C	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr6	164169609	164169610	chr6:164169610:G:A	rs138318022	G	A	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr6	164169614	164169615	chr6:164169615:G:C	rs9356189	G	C	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr6	164208682	164208683	chr6:164208683:G:T	rs1325402	G	T	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr6	164564036	164564037	chr6:164564037:C:T	rs529191627	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	164908922	164908923	chr6:164908923:T:C	rs1285086031	T	C	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr6	165129862	165129863	chr6:165129863:C:T	rs9364791	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr6	165206918	165206919	chr6:165206919:G:C	rs1029386879	G	C	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr6	165328875	165328876	chr6:165328876:T:C	rs551444	T	C	T	Sox3.mouse_HMG_1	10	1	-	5.297783917145156	-1.610461241826182	AACCATTTATATTGTTT
chr6	165799841	165799842	chr6:165799842:G:T	rs75415167	G	T	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr6	165845539	165845540	chr6:165845540:A:G	rs117258088	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr6	166258517	166258518	chr6:166258518:C:T	rs142296018	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr6	166276111	166276112	chr6:166276112:C:T	rs9355566	C	T	T	Sox3.mouse_HMG_1	3	1	+	3.7525813443422895	-2.2301947737920345	CAACAATGGCTCTGTTG
chr6	166429727	166429728	chr6:166429728:C:G	rs58031677	C	G	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr6	166437309	166437310	chr6:166437310:C:T	rs9348131	C	T	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr6	166437765	166437766	chr6:166437766:C:T	rs113312701	C	T	C	Sox3.mouse_HMG_1	3	1	-	4.145875407727772	4.328196964521727	CAGGAATGGCAGTGTTT
chr6	166447682	166447683	chr6:166447683:A:G	rs2281052	A	G	A	Sox3.mouse_HMG_1	3	1	-	7.393745207791541	13.376521325925859	AAATAATGACAATGTTG
chr6	166456936	166456937	chr6:166456937:A:C	rs2235288	A	C	A	Sox3.mouse_HMG_1	12	1	-	2.803407507615555	-3.7647205630520677	AGAGAATTCCATTGTAT
chr6	166575129	166575130	chr6:166575130:C:G	rs117332698	C	G	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	166696668	166696669	chr6:166696669:G:A	rs75701741	G	A	.	Sox3.mouse_HMG_1	0	1	+	1.539862976921288	2.912679642382827	GAACATTTAAATTGGTG
chr6	168353107	168353108	chr6:168353108:C:T	rs185128817	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr6	168353108	168353109	chr6:168353109:T:G	rs9355203	T	G	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr6	168464710	168464711	chr6:168464711:T:C	rs2763224	T	C	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr6	168826850	168826851	chr6:168826851:A:C	rs9969068	A	C	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr6	168826885	168826886	chr6:168826886:A:G	rs73246787	A	G	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr6	168916369	168916370	chr6:168916370:A:G	rs59881369	A	G	A	Sox3.mouse_HMG_1	9	1	-	4.018313976224781	4.05402010110935	GAATAATGGTATTTTTA
chr6	169145967	169145968	chr6:169145968:T:C	rs9689078	T	C	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr6	169159081	169159082	chr6:169159082:A:G	rs1395249420	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.522862909043529	-2.1232278605853883	GAACAATAAAATTAATG
chr6	169223902	169223903	chr6:169223903:G:A	rs56869747	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr6	169341762	169341763	chr6:169341763:T:C	rs7452203	T	C	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr6	169677226	169677227	chr6:169677227:G:A	rs74838157	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr6	169895684	169895685	chr6:169895685:T:G	rs36137265	T	G	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr6	170045754	170045755	chr6:170045755:C:T	rs79290324	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr6	170045767	170045768	chr6:170045768:T:A	rs3942996	T	A	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr6	170147502	170147503	chr6:170147503:C:T	rs79362042	C	T	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr6	170302440	170302441	chr6:170302441:T:C	rs2005443	T	C	T	Sox3.mouse_HMG_1	5	1	-	3.492809877192718	-3.2333236001097374	GGGCAATGATATGGTTT
chr6	170404310	170404311	chr6:170404311:G:C	rs9295406	G	C	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr6	170459708	170459709	chr6:170459709:A:C	rs76918707	A	C	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr6	170480203	170480204	chr6:170480204:G:A	rs57236866	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr6	170480208	170480209	chr6:170480209:C:T	rs368016511	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr6	170572961	170572962	chr6:170572962:G:A	rs6937840	G	A	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr7	95279	95280	chr7:95280:A:C	rs11772933	A	C	N	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr7	240739	240740	chr7:240740:T:C	rs938365189	T	C	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr7	240743	240744	chr7:240744:C:A	rs912995155	C	A	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr7	240767	240768	chr7:240768:C:T	rs945740270	C	T	C	Sox3.mouse_HMG_1	12	1	+	1.5228695543372286	7.729335139555079	AAACAATGCCACCGATT
chr7	240771	240772	chr7:240772:T:C	rs904013966	T	C	T	Sox3.mouse_HMG_1	16	1	+	1.5228695543372286	-2.0789271112837535	AAACAATGCCACCGATT
chr7	270195	270196	chr7:270196:T:C	rs151120086	T	C	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr7	678805	678806	chr7:678806:A:C	rs67525723	A	C	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr7	735010	735011	chr7:735011:C:T	rs760745080	C	T	-	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr7	735136	735137	chr7:735137:C:T	rs12702635	C	T	-	Sox3.mouse_HMG_1	13	1	-	2.2515098878454944	-3.8565959021804215	GAGCAATGACATCGTGA
chr7	880780	880781	chr7:880781:A:G	rs77178709	A	G	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr7	1094403	1094404	chr7:1094404:C:T	rs62431034	C	T	c	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr7	1275909	1275910	chr7:1275910:C:T	rs13221556	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr7	1622488	1622489	chr7:1622489:A:G	rs62436945	A	G	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr7	1659689	1659690	chr7:1659690:T:A	rs77164466	T	A	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr7	1838415	1838416	chr7:1838416:C:T	rs1359284395	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr7	1983083	1983084	chr7:1983084:G:A	rs118013978	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr7	2248952	2248953	chr7:2248953:C:G	rs34002396	C	G	C	Sox3.mouse_HMG_1	11	1	-	2.514235896904025	-1.4152415451954479	CTACCATTTCAGTGTTT
chr7	2393161	2393162	chr7:2393162:G:C	rs2057840	G	C	G	Sox3.mouse_HMG_1	9	1	-	2.0598472980451388	-3.9767967085052924	GAACACTAACAGTTTTG
chr7	2724819	2724820	chr7:2724820:C:T	rs79941659	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr7	2760434	2760435	chr7:2760435:C:T	rs17132655	C	T	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr7	3007216	3007217	chr7:3007217:T:C	rs1968923	T	C	C	Sox3.mouse_HMG_1	11	1	+	5.067720021579482	-0.989736087380871	AAATAATGCAATGGTTT
chr7	3007232	3007233	chr7:3007233:G:A	rs74555857	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr7	3064968	3064969	chr7:3064969:T:C	rs1965950	T	C	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr7	3171973	3171974	chr7:3171974:C:T	rs7777228	C	T	c	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr7	3216430	3216431	chr7:3216431:G:C	rs62439546	G	C	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr7	3244505	3244506	chr7:3244506:T:C	rs10452788	T	C	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	3374105	3374106	chr7:3374106:C:T	rs12673513	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr7	3409340	3409341	chr7:3409341:A:G	rs2056475	A	G	G	Sox3.mouse_HMG_1	7	1	+	4.176370780723848	4.672441100501158	GAACAATACTCTTGGTT
chr7	3805193	3805194	chr7:3805194:C:G	rs12701170	C	G	C	Sox3.mouse_HMG_1	8	1	-	4.589949970927788	4.483802982559348	AAACAACTGTATTTTTT
chr7	3805216	3805217	chr7:3805217:T:G	rs12701171	T	G	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr7	3861177	3861178	chr7:3861178:T:C	rs10085568	T	C	C	Sox3.mouse_HMG_1	9	1	-	2.7838260820858136	-1.799173537635518	GAACATTACAACTGTTT
chr7	3880514	3880515	chr7:3880515:T:C	rs77763051	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	4266567	4266568	chr7:4266568:T:C	rs34165065	T	C	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr7	4460287	4460288	chr7:4460288:C:G	rs7782258	C	G	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr7	4503668	4503669	chr7:4503669:C:G	rs1447397	C	G	G	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr7	4823045	4823046	chr7:4823046:G:A	rs7800598	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr7	4938291	4938292	chr7:4938292:A:G	rs62441537	A	G	a	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr7	5008918	5008919	chr7:5008919:A:C	rs568277638	A	C	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr7	5522927	5522928	chr7:5522928:C:T	rs113926384	C	T	-	Sox3.mouse_HMG_1	13	1	-	2.223921136226596	-3.88418465379932	AAGCAATTCTCTTGTCT
chr7	5522953	5522954	chr7:5522954:T:C	rs852433	T	C	-	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr7	5581028	5581029	chr7:5581029:T:C	rs79575869	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr7	6379701	6379702	chr7:6379702:C:G	rs861369	C	G	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr7	6380161	6380162	chr7:6380162:C:T	rs836488	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr7	6444311	6444312	chr7:6444312:A:G	rs528328973	A	G	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr7	6618923	6618924	chr7:6618924:A:G	rs2248342	A	G	g	Sox3.mouse_HMG_1	4	1	+	2.2017591343406995	-4.61056595763654	AGCCAATGTCAGTGTCT
chr7	6659273	6659274	chr7:6659274:C:A	rs872424	C	A	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr7	7062306	7062307	chr7:7062307:T:A	rs77906399	T	A	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr7	7146922	7146923	chr7:7146923:G:A	rs724254	G	A	A	Sox3.mouse_HMG_1	8	1	+	2.040124916006135	3.066538391016772	AAGCAATCGTATTCTTG
chr7	7229224	7229225	chr7:7229225:G:T	rs11972106	G	T	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr7	7268509	7268510	chr7:7268510:A:G	rs17165832	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr7	7321852	7321853	chr7:7321853:A:G	rs17506507	A	G	A	Sox3.mouse_HMG_1	5	1	-	0.9358951290628579	1.0312053088671835	GAACATTGACATTGACA
chr7	7408435	7408436	chr7:7408436:A:G	rs1294598	A	G	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr7	7424048	7424049	chr7:7424049:A:G	rs115692596	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr7	7505110	7505111	chr7:7505111:G:A	rs10486175	G	A	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr7	7595532	7595533	chr7:7595533:T:C	rs17168807	T	C	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr7	7595585	7595586	chr7:7595586:C:T	rs73340646	C	T	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr7	7662847	7662848	chr7:7662848:A:C	rs12111719	A	C	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr7	7662869	7662870	chr7:7662870:G:T	rs564798941	G	T	G	Sox3.mouse_HMG_1	7	1	+	2.4830729121294977	0.9455238073873419	ATATAATGATTTTGTTT
chr7	7682014	7682015	chr7:7682015:A:C	rs62432580	A	C	A	Sox3.mouse_HMG_1	12	1	-	2.7515435621375626	-3.816584508530059	CAACAATATTAGTGAAC
chr7	7719956	7719957	chr7:7719957:G:A	rs28912669	G	A	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr7	7953863	7953864	chr7:7953864:C:T	rs58586931	C	T	C	Sox3.mouse_HMG_1	13	1	+	4.85401335914391	4.592999533774291	ATACAATGTTATTCTAT
chr7	7970356	7970357	chr7:7970357:T:C	rs1418064003	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr7	7970357	7970358	chr7:7970358:C:G	rs75826739	C	G	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr7	8071149	8071150	chr7:8071150:A:G	rs10486207	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr7	8119326	8119327	chr7:8119327:T:C	rs17330033	T	C	T	Sox3.mouse_HMG_1	5	1	-	5.324615796004579	-1.401517681297876	GAAGAATGATCTTGTTT
chr7	8155842	8155843	chr7:8155843:A:C	rs78393208	A	C	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr7	8260570	8260571	chr7:8260571:T:C	rs3823816	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr7	8328356	8328357	chr7:8328357:A:C	rs11760701	A	C	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr7	8509846	8509847	chr7:8509847:C:T	rs2057865	C	T	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr7	8594361	8594362	chr7:8594362:G:A	rs17151994	G	A	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr7	8976421	8976422	chr7:8976422:C:T	rs4725152	C	T	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr7	8982281	8982282	chr7:8982282:T:C	rs9986680	T	C	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr7	8985233	8985234	chr7:8985234:T:C	rs11982591	T	C	T	Sox3.mouse_HMG_1	5	1	-	4.8411682895464025	-1.8849651877560525	AAATAATGCTTTTGTTA
chr7	9130167	9130168	chr7:9130168:G:A	rs188374	G	A	a	Sox3.mouse_HMG_1	13	1	+	7.420616999070985	1.312511209045069	AAACAAATATATTGTCT
chr7	10129021	10129022	chr7:10129022:A:C	rs17162680	A	C	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr7	10241560	10241561	chr7:10241561:C:G	rs73269571	C	G	C	Sox3.mouse_HMG_1	2	1	-	4.7547817408956785	2.7373818401548267	AAGCAATTGAAGTGTAA
chr7	10337317	10337318	chr7:10337318:T:A	rs6948603	T	A	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr7	10343126	10343127	chr7:10343127:T:C	rs13236213	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.4818268212425387	-4.244306656059918	GATCAATGATATTGCCT
chr7	10819420	10819421	chr7:10819421:T:C	rs142124911	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr7	10977062	10977063	chr7:10977063:C:G	rs1640701	C	G	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr7	10999113	10999114	chr7:10999114:A:G	rs77043289	A	G	A	Sox3.mouse_HMG_1	11	1	-	6.76365970016545	0.7062035912050971	AAACAAGAAGATTGTTT
chr7	10999130	10999131	chr7:10999131:T:C	rs189408303	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr7	11485817	11485818	chr7:11485818:T:C	rs73068765	T	C	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr7	11485830	11485831	chr7:11485831:A:G	rs17556469	A	G	A	Sox3.mouse_HMG_1	12	1	-	0.9800132619754182	-5.226452323242433	CAACAATGCATGTCTTT
chr7	11485901	11485902	chr7:11485902:T:C	rs17556497	T	C	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr7	11564276	11564277	chr7:11564277:A:G	rs2189640	A	G	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr7	11725905	11725906	chr7:11725906:A:T	rs4422687	A	T	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr7	11779935	11779936	chr7:11779936:G:A	rs10267051	G	A	G	Sox3.mouse_HMG_1	11	1	+	1.2282927865611701	-2.5061846404845776	CAACAATGCACGTCTTT
chr7	12120200	12120201	chr7:12120201:G:A	rs35572431	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr7	12423136	12423137	chr7:12423137:G:A	rs12667179	G	A	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr7	12522838	12522839	chr7:12522839:A:C	rs12671228	A	C	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr7	12552077	12552078	chr7:12552078:A:T	rs10255870	A	T	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr7	12759361	12759362	chr7:12759362:A:C	rs111474885	A	C	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr7	12775694	12775695	chr7:12775695:C:T	rs10262101	C	T	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr7	12806007	12806008	chr7:12806008:C:T	rs6460979	C	T	T	Sox3.mouse_HMG_1	6	1	+	1.136490456714755	7.782581226343675	GGACAACGAAATTGTCG
chr7	12989348	12989349	chr7:12989349:T:C	rs977201	T	C	C	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr7	13144587	13144588	chr7:13144588:A:T	rs60323503	A	T	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr7	13369148	13369149	chr7:13369149:G:T	rs1583255	G	T	G	Sox3.mouse_HMG_1	11	1	-	2.298777478888113	2.4937774939418387	AAACAATGTTACTGGGT
chr7	13375283	13375284	chr7:13375284:T:C	rs2116627	T	C	t	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr7	13508131	13508132	chr7:13508132:G:T	rs2723394	G	T	T	Sox3.mouse_HMG_1	9	1	-	4.9009830875154154	3.4473387006863145	CAACAATGACATCCTTA
chr7	13979616	13979617	chr7:13979617:A:G	rs2214683	A	G	C	Sox3.mouse_HMG_1	6	1	-	2.9405545736828556	-3.70553619594606	AAACAATGATATAATGG
chr7	13983665	13983666	chr7:13983666:G:T	rs3801104	G	T	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	14126371	14126372	chr7:14126372:T:C	rs10272917	T	C	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr7	14417938	14417939	chr7:14417939:T:A	rs73068025	T	A	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr7	14417984	14417985	chr7:14417985:A:G	rs73068026	A	G	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr7	14457907	14457908	chr7:14457908:G:T	rs187444454	G	T	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	14606323	14606324	chr7:14606324:A:G	rs9638713	A	G	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr7	14690786	14690787	chr7:14690787:A:T	rs17668635	A	T	A	Sox3.mouse_HMG_1	10	1	+	7.629089140673702	0.8161541615066884	CAACAAAAAAAGTGTTT
chr7	14717979	14717980	chr7:14717980:C:T	rs189352869	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr7	14760994	14760995	chr7:14760995:A:C	rs17168398	A	C	A	Sox3.mouse_HMG_1	5	1	+	0.9316727006072841	-5.881472153684803	CAACAATGACTTGGTCT
chr7	14900298	14900299	chr7:14900299:C:T	rs217598	C	T	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr7	15042645	15042646	chr7:15042646:T:G	rs7788523	T	G	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr7	15043279	15043280	chr7:15043280:T:G	rs2041371	T	G	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr7	15245949	15245950	chr7:15245950:C:A	rs61113173	C	A	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr7	15461402	15461403	chr7:15461403:C:T	rs6461185	C	T	C	Sox3.mouse_HMG_1	10	1	-	4.923258482202227	11.831503641173565	TAACAATGAAGTTGTAA
chr7	15649221	15649222	chr7:15649222:A:C	rs10228856	A	C	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr7	16269461	16269462	chr7:16269462:A:G	chr7:16269462:A:G	A	G	A	Sox3.mouse_HMG_1	10	1	+	7.7451303063953745	0.8368851474240369	CAGCAATAACATTGTGA
chr7	16300192	16300193	chr7:16300193:G:A	rs192469436	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr7	16554937	16554938	chr7:16554938:G:C	rs116540265	G	C	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr7	16607106	16607107	chr7:16607107:G:A	rs7788389	G	A	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr7	16653496	16653497	chr7:16653497:G:C	rs818586	G	C	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr7	16653506	16653507	chr7:16653507:A:G	rs818587	A	G	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr7	16679038	16679039	chr7:16679039:G:A	chr7:16679039:G:A	G	A	G	Sox3.mouse_HMG_1	9	1	-	5.585190474849677	5.549484349965107	TATCAATGACAGTGTGT
chr7	16744318	16744319	chr7:16744319:T:C	rs1723804	T	C	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr7	16745706	16745707	chr7:16745707:C:A	rs56147833	C	A	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr7	16756411	16756412	chr7:16756412:G:T	rs11976749	G	T	G	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr7	17153788	17153789	chr7:17153789:G:A	rs139276265	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr7	17279942	17279943	chr7:17279943:G:C	rs193117046	G	C	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr7	17506491	17506492	chr7:17506492:C:A	rs58828946	C	A	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr7	17531286	17531287	chr7:17531287:T:G	rs139475333	T	G	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr7	18165368	18165369	chr7:18165369:T:C	rs1178354	T	C	T	Sox3.mouse_HMG_1	12	1	+	1.4506977264041931	-4.75576785881366	CAACAGCACTAGTGTTT
chr7	18165378	18165379	chr7:18165379:T:C	rs79004846	T	C	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr7	18866197	18866198	chr7:18866198:A:G	rs13242358	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr7	18917207	18917208	chr7:18917208:G:A	rs17140258	G	A	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr7	19469989	19469990	chr7:19469990:G:T	rs530828167	G	T	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr7	19522771	19522772	chr7:19522772:T:A	rs778567161	T	A	T	Sox3.mouse_HMG_1	12	1	-	4.8882710473420845	10.476463120975195	AAACAACACAATAGTTT
chr7	19834271	19834272	chr7:19834272:C:T	rs34634884	C	T	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr7	20154227	20154228	chr7:20154228:G:A	rs144509121	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr7	20241501	20241502	chr7:20241502:C:A	rs117757442	C	A	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr7	20280154	20280155	chr7:20280155:G:A	rs62453044	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr7	20280191	20280192	chr7:20280192:T:A	rs62453045	T	A	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr7	20307195	20307196	chr7:20307196:T:C	rs558928109	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr7	20374537	20374538	chr7:20374538:T:C	rs7788942	T	C	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr7	20532906	20532907	chr7:20532907:G:T	rs916789	G	T	T	Sox3.mouse_HMG_1	13	1	+	3.3068976135379002	-3.062222001857635	CAACAAATCCAGTGTTC
chr7	21108058	21108059	chr7:21108059:A:C	rs11974269	A	C	A	Sox3.mouse_HMG_1	15	1	+	6.841485073531155	6.035826897528143	AAACAATACCAGTGCAT
chr7	21123314	21123315	chr7:21123315:T:C	rs62439794	T	C	T	Sox3.mouse_HMG_1	11	1	+	2.3292121736080493	-3.7282439353523036	AGGCAATGCAATAGTTG
chr7	21383286	21383287	chr7:21383287:T:C	rs73056578	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr7	21618593	21618594	chr7:21618594:G:A	chr7:21618594:G:A	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr7	21672241	21672242	chr7:21672242:C:T	rs10950869	C	T	T	Sox3.mouse_HMG_1	9	1	+	7.3396639442800495	7.30395781939548	TAGCAATTACATTGTAA
chr7	21765058	21765059	chr7:21765059:A:G	rs17145312	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr7	21918001	21918002	chr7:21918002:T:C	rs73281724	T	C	.	Sox3.mouse_HMG_1	2	1	-	2.4756874607490125	-1.9322475182314467	AAAGAAAGTCAGTGTTG
chr7	21942681	21942682	chr7:21942682:T:C	rs13226917	T	C	.	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr7	22126403	22126404	chr7:22126404:C:T	rs1419755	C	T	T	Sox3.mouse_HMG_1	11	1	-	1.091661670427267	-2.6428157566184804	CAGCAATGACAGTGACA
chr7	22217807	22217808	chr7:22217808:T:C	rs4722112	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	22375849	22375850	chr7:22375850:T:G	rs80030891	T	G	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr7	22378135	22378136	chr7:22378136:T:G	rs6942620	T	G	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr7	22378140	22378141	chr7:22378141:C:A	rs10807812	C	A	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr7	22481835	22481836	chr7:22481836:A:C	rs6968662	A	C	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr7	22496881	22496882	chr7:22496882:A:T	rs12539559	A	T	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr7	22598049	22598050	chr7:22598050:G:A	rs563642906	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr7	22675554	22675555	chr7:22675555:C:T	rs2961305	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr7	22717650	22717651	chr7:22717651:A:C	rs6963591	A	C	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr7	22720382	22720383	chr7:22720383:C:A	rs13438415	C	A	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr7	22720391	22720392	chr7:22720392:C:G	rs73683966	C	G	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr7	22963646	22963647	chr7:22963647:G:A	rs115923476	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr7	22994677	22994678	chr7:22994678:T:C	rs11762669	T	C	T	Sox3.mouse_HMG_1	5	1	-	4.364728193922634	-2.3614052833798214	GAACAATTTTATTCTGA
chr7	23022606	23022607	chr7:23022607:C:T	rs148850755	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr7	23022650	23022651	chr7:23022651:C:T	rs1441229413	C	T	c	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr7	23022651	23022652	chr7:23022652:G:A	rs77520274	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr7	23025363	23025364	chr7:23025364:G:C	rs10281759	G	C	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr7	23411868	23411869	chr7:23411869:C:T	rs189221807	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr7	23915412	23915413	chr7:23915413:T:C	rs2059446	T	C	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr7	24214060	24214061	chr7:24214061:A:G	rs2172676	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr7	24712528	24712529	chr7:24712529:T:C	rs17149964	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr7	24787125	24787126	chr7:24787126:C:T	rs370216106	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr7	24787169	24787170	chr7:24787170:G:T	rs191079451	G	T	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr7	24787178	24787179	chr7:24787179:G:A	rs116429702	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr7	24899267	24899268	chr7:24899268:C:G	rs131	C	G	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr7	25105976	25105977	chr7:25105977:T:C	rs6974844	T	C	g	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr7	25163893	25163894	chr7:25163894:A:C	rs2189293	A	C	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr7	25259984	25259985	chr7:25259985:G:C	rs62451646	G	C	G	Sox3.mouse_HMG_1	0	1	+	4.71408709517439	4.49731224828373	GCACAATGTCAGTGTGG
chr7	25356634	25356635	chr7:25356635:G:A	rs10253546	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr7	25407969	25407970	chr7:25407970:T:A	rs6951954	T	A	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr7	25407971	25407972	chr7:25407972:A:G	rs6969555	A	G	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr7	25460899	25460900	chr7:25460900:C:A	rs17317312	C	A	C	Sox3.mouse_HMG_1	3	1	+	7.999297054374585	1.2745835915108865	AAACAATAACTTTGTAA
chr7	25522251	25522252	chr7:25522252:C:T	rs6977303	C	T	C	Sox3.mouse_HMG_1	16	1	-	4.623543299644348	4.189711854923241	AAACAATTGCAGTGGAG
chr7	25528234	25528235	chr7:25528235:T:C	rs10807828	T	C	C	Sox3.mouse_HMG_1	4	1	-	6.556896501072892	-0.255428590904344	GTACAATACAATTGTCT
chr7	25619806	25619807	chr7:25619807:C:T	rs17152043	C	T	C	Sox3.mouse_HMG_1	2	1	-	4.734884955407741	9.142819934388202	CAGCAAATGCATTGTTT
chr7	25947828	25947829	chr7:25947829:A:C	rs12672505	A	C	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr7	26001108	26001109	chr7:26001109:T:G	rs58292232	T	G	G	Sox3.mouse_HMG_1	1	1	-	2.8449577903330203	-2.792897105928091	AAACAACAATATTGAAA
chr7	26190551	26190552	chr7:26190552:A:C	rs1049938	A	C	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr7	26494242	26494243	chr7:26494243:G:A	rs77184526	G	A	G	Sox3.mouse_HMG_1	6	1	-	0.29751093013173546	6.943601699760654	AAGCCACGACAGTGTTT
chr7	26850952	26850953	chr7:26850953:G:C	rs3934268	G	C	c	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr7	26865308	26865309	chr7:26865309:A:G	rs73069541	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr7	26865333	26865334	chr7:26865334:G:A	rs17323962	G	A	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr7	27099899	27099900	chr7:27099900:G:T	rs151171339	G	T	G	Sox3.mouse_HMG_1	8	1	+	8.312915419154189	8.519507655696293	AAACAAATGAATTGTTG
chr7	27157981	27157982	chr7:27157982:C:G	rs4722666	C	G	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr7	27347184	27347185	chr7:27347185:C:T	rs4719888	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr7	27347201	27347202	chr7:27347202:A:G	rs28357211	A	G	A	Sox3.mouse_HMG_1	7	1	-	0.868937516562994	-3.2142055136196244	CAACAAATACAGCGTTG
chr7	28147514	28147515	chr7:28147515:G:A	rs73089302	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr7	28203566	28203567	chr7:28203567:T:C	rs10263934	T	C	T	Sox3.mouse_HMG_1	11	1	+	2.80198215515561	-3.255473953804742	GTACAATTTCATTGAAT
chr7	28280414	28280415	chr7:28280415:A:G	rs177486	A	G	a	Sox3.mouse_HMG_1	9	1	+	1.7172104493763611	-2.8657891703449705	AAACAATACAGGTTTTT
chr7	28612154	28612155	chr7:28612155:A:G	rs41280	A	G	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr7	28836119	28836120	chr7:28836120:T:A	rs75422854	T	A	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr7	28865660	28865661	chr7:28865661:G:A	rs182776642	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr7	28985998	28985999	chr7:28985999:C:T	rs1499227	C	T	T	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr7	29019764	29019765	chr7:29019765:G:A	rs2648661	G	A	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr7	29218333	29218334	chr7:29218334:A:G	rs900195666	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr7	29409480	29409481	chr7:29409481:A:G	rs57991527	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr7	29469348	29469349	chr7:29469349:A:G	rs79776490	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr7	29493777	29493778	chr7:29493778:G:A	rs1946134	G	A	A	Sox3.mouse_HMG_1	9	1	-	0.7034489415898789	0.6677428167053093	GAACAATGACAGAGCCT
chr7	29794475	29794476	chr7:29794476:A:T	rs28479988	A	T	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr7	29826515	29826516	chr7:29826516:G:A	rs6957373	G	A	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr7	30041873	30041874	chr7:30041874:G:A	rs183682197	G	A	G	Sox3.mouse_HMG_1	2	1	+	2.399608824901042	6.807543803881503	GTGCTATGTCATTGTTT
chr7	30185502	30185503	chr7:30185503:G:T	rs6462192	G	T	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr7	30318836	30318837	chr7:30318837:T:G	rs1277066666	T	G	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr7	30352585	30352586	chr7:30352586:G:A	rs150190138	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr7	30874969	30874970	chr7:30874970:A:G	rs577036312	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr7	30889170	30889171	chr7:30889171:G:A	rs6968404	G	A	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr7	31115641	31115642	chr7:31115642:T:C	rs2192028	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr7	31188472	31188473	chr7:31188473:C:G	rs11976529	C	G	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr7	31885418	31885419	chr7:31885419:T:C	rs116213572	T	C	T	Sox3.mouse_HMG_1	11	1	+	1.6440976482995648	-4.413358460660787	GTGCAATTTCATTGTGG
chr7	31957631	31957632	chr7:31957632:T:A	rs77615863	T	A	A	Sox3.mouse_HMG_1	0	1	-	6.456807848008438	4.433653522692193	AAAAAATGACACTGTTG
chr7	31995843	31995844	chr7:31995844:C:G	rs17336016	C	G	C	Sox3.mouse_HMG_1	8	1	+	2.0377765333873414	2.143923521755781	AAAAAATGCCTTTGTAT
chr7	32093727	32093728	chr7:32093728:A:C	rs58453705	A	C	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr7	32283487	32283488	chr7:32283488:T:C	rs17161132	T	C	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr7	32518481	32518482	chr7:32518482:A:C	rs7804609	A	C	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr7	32881461	32881462	chr7:32881462:G:A	rs77278941	G	A	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr7	33144513	33144514	chr7:33144514:T:C	rs10241784	T	C	C	Sox3.mouse_HMG_1	6	1	+	5.291523175628924	-1.3545675939999964	AAACAATGGCTTTCTTG
chr7	33144539	33144540	chr7:33144540:C:T	rs11760830	C	T	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr7	33232916	33232917	chr7:33232917:G:A	rs370125907	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr7	33232942	33232943	chr7:33232943:A:G	rs12666753	A	G	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr7	33563325	33563326	chr7:33563326:G:A	rs568664955	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr7	33639655	33639656	chr7:33639656:G:A	rs928552177	G	A	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr7	34088222	34088223	chr7:34088223:G:A	rs566879631	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr7	34726334	34726335	chr7:34726335:C:T	rs2893485	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr7	34735902	34735903	chr7:34735903:G:A	rs324391	G	A	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr7	35025914	35025915	chr7:35025915:A:C	rs329255	A	C	.	Sox3.mouse_HMG_1	6	1	-	3.3489866948286284	-3.5594683392677817	GACCAATGTCAGTGCTT
chr7	35355395	35355396	chr7:35355396:C:A	rs1425135	C	A	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr7	35556630	35556631	chr7:35556631:G:A	rs12540338	G	A	A	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr7	35890826	35890827	chr7:35890827:A:C	rs10244144	A	C	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr7	36155986	36155987	chr7:36155987:G:C	rs73688713	G	C	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr7	36157050	36157051	chr7:36157051:T:C	rs2002958	T	C	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr7	36408596	36408597	chr7:36408597:G:A	rs189140708	G	A	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr7	36448691	36448692	chr7:36448692:T:C	rs9639730	T	C	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr7	36450252	36450253	chr7:36450253:T:C	rs80033801	T	C	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr7	36497287	36497288	chr7:36497288:G:A	rs6979650	G	A	G	Sox3.mouse_HMG_1	4	1	-	4.377741985640623	4.788747274124403	AAACCATGTAAATGTTG
chr7	36523557	36523558	chr7:36523558:T:G	rs16879399	T	G	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr7	36606033	36606034	chr7:36606034:T:A	rs13231285	T	A	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr7	36658986	36658987	chr7:36658987:T:G	rs6979282	T	G	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr7	36735609	36735610	chr7:36735610:G:A	rs17379430	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr7	37245896	37245897	chr7:37245897:A:G	rs112140773	A	G	A	Sox3.mouse_HMG_1	2	1	+	3.2875458844070096	-1.12038909457345	CAATAATAATAGTGATA
chr7	37411902	37411903	chr7:37411903:T:C	rs529039184	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr7	37626245	37626246	chr7:37626246:G:A	rs2597279	G	A	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr7	37626269	37626270	chr7:37626270:A:C	rs6952993	A	C	a	Sox3.mouse_HMG_1	8	1	+	2.555170326435929	1.4226098630568536	AAAAAATAACAATGTGT
chr7	37753299	37753300	chr7:37753300:T:C	rs10274478	T	C	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr7	37794025	37794026	chr7:37794026:A:G	rs17825495	A	G	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr7	37915351	37915352	chr7:37915352:T:C	rs2722315	T	C	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr7	37915386	37915387	chr7:37915387:G:A	rs2598112	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr7	37917459	37917460	chr7:37917460:G:C	rs115584196	G	C	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr7	38384112	38384113	chr7:38384113:C:G	rs2241114	C	G	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr7	38593050	38593051	chr7:38593051:T:C	rs12701637	T	C	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr7	38710235	38710236	chr7:38710236:A:T	rs1978172	A	T	a	Sox3.mouse_HMG_1	11	1	-	7.474444683251489	1.6119885893448622	GACCAATGATATTGTAA
chr7	39325393	39325394	chr7:39325394:C:T	rs4723858	C	T	C	Sox3.mouse_HMG_1	12	1	-	6.595908826741099	7.57584482377561	CAACAATTTCAGGGTTG
chr7	39331907	39331908	chr7:39331908:C:A	rs188643003	C	A	C	Sox3.mouse_HMG_1	13	1	-	4.164283376072778	-2.2048362393227565	AAACAAATGCATGGTTT
chr7	39535167	39535168	chr7:39535168:A:G	rs12113030	A	G	G	Sox3.mouse_HMG_1	15	1	-	8.310029669830955	4.007527872035473	TTACAATGAAAGTGTTA
chr7	39604396	39604397	chr7:39604397:A:G	rs570788738	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr7	39666870	39666871	chr7:39666871:A:G	rs17417049	A	G	A	Sox3.mouse_HMG_1	5	1	-	2.780333257486815	2.87564343729114	AAGCATTGACATTATTT
chr7	40361776	40361777	chr7:40361777:G:A	rs6462979	G	A	A	Sox3.mouse_HMG_1	2	1	+	2.3426767741550325	6.7506117531354946	TAGCAATTGAAGTGATT
chr7	40757136	40757137	chr7:40757137:G:A	rs766317	G	A	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr7	40791696	40791697	chr7:40791697:G:A	rs10231545	G	A	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr7	40986000	40986001	chr7:40986001:G:C	rs6967858	G	C	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr7	41085338	41085339	chr7:41085339:C:A	rs59566101	C	A	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr7	41097374	41097375	chr7:41097375:C:T	rs116235239	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr7	41123389	41123390	chr7:41123390:T:C	rs6463006	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr7	41189242	41189243	chr7:41189243:T:A	rs117447296	T	A	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr7	41316444	41316445	chr7:41316445:T:C	rs37297	T	C	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr7	41336984	41336985	chr7:41336985:T:C	rs43213	T	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr7	41451734	41451735	chr7:41451735:A:C	rs78749107	A	C	A	Sox3.mouse_HMG_1	14	1	-	3.2460053822944372	-3.18064386948756	TCACTATGTTAGTGTTT
chr7	41559731	41559732	chr7:41559732:T:A	rs73323904	T	A	T	Sox3.mouse_HMG_1	12	1	+	6.069875882072076	0.4816838084389653	ACACAATGACAGTTTTT
chr7	41847574	41847575	chr7:41847575:C:A	rs35287602	C	A	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr7	41874059	41874060	chr7:41874060:C:T	rs17639280	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr7	41889120	41889121	chr7:41889121:C:T	rs150847326	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr7	42427917	42427918	chr7:42427918:T:C	rs2217623	T	C	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr7	42427918	42427919	chr7:42427919:G:C	rs10263794	G	C	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr7	42538272	42538273	chr7:42538273:A:T	rs1917213	A	T	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr7	42933289	42933290	chr7:42933290:A:G	rs187991509	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr7	43354022	43354023	chr7:43354023:A:G	rs12702034	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr7	43409574	43409575	chr7:43409575:C:G	rs6415276	C	G	G	Sox3.mouse_HMG_1	13	1	-	7.080004050446709	0.9718982604207933	GAACAAAATCAGTGTTA
chr7	43554960	43554961	chr7:43554961:C:T	rs2304319	C	T	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr7	43582492	43582493	chr7:43582493:T:G	rs770478092	T	G	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	43731519	43731520	chr7:43731520:A:G	rs28412519	A	G	a	Sox3.mouse_HMG_1	12	1	-	5.2814476344196795	-0.925017950798173	CACCAAGGACATTGTTT
chr7	43858887	43858888	chr7:43858888:C:T	rs2528363	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr7	43927242	43927243	chr7:43927243:A:G	rs2528381	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr7	43929801	43929802	chr7:43929802:G:C	rs7802578	G	C	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr7	43929808	43929809	chr7:43929809:T:G	rs2079390	T	G	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr7	44051463	44051464	chr7:44051464:A:C	rs17449252	A	C	A	Sox3.mouse_HMG_1	9	1	+	4.330301283151201	5.783945669980302	CAACAATAAAATTTTGA
chr7	44538291	44538292	chr7:44538292:A:G	rs147201814	A	G	A	Sox3.mouse_HMG_1	1	1	+	4.632216618548875	0.3047832751461842	AATCAATAGAAGTGTGT
chr7	44570252	44570253	chr7:44570253:C:T	rs217377	C	T	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr7	44973944	44973945	chr7:44973945:G:A	rs530845321	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr7	45024440	45024441	chr7:45024441:G:C	rs884082	G	C	G	Sox3.mouse_HMG_1	16	1	-	8.124466059388801	10.760411084252672	TGACAATGACAGTGTTC
chr7	45112592	45112593	chr7:45112593:T:G	rs62457083	T	G	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr7	45187692	45187693	chr7:45187693:C:G	rs17172492	C	G	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr7	45187722	45187723	chr7:45187723:C:T	rs13229410	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr7	45187724	45187725	chr7:45187725:A:G	rs35758250	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr7	45907555	45907556	chr7:45907556:A:G	rs12671484	A	G	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr7	46126904	46126905	chr7:46126905:C:G	rs13231830	C	G	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr7	46218618	46218619	chr7:46218619:T:C	rs10245839	T	C	T	Sox3.mouse_HMG_1	6	1	+	6.0569228252699405	-0.5891679443589783	AAACAATGACTTTTTTG
chr7	46350010	46350011	chr7:46350011:T:C	rs80039990	T	C	C	Sox3.mouse_HMG_1	10	1	-	5.214836366925625	-1.6934087920457115	TAACAATTATATTAATT
chr7	46366535	46366536	chr7:46366536:A:G	rs12333796	A	G	A	Sox3.mouse_HMG_1	14	1	-	1.9684082608004363	-4.141482654448271	GACCAAATGCATTGTTG
chr7	46490547	46490548	chr7:46490548:A:G	rs970605	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.8324100570515476	-4.893723420250908	CCACAATGTCAATGTAG
chr7	46589433	46589434	chr7:46589434:A:G	rs10258175	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.889320638061754	-1.7567701315671673	GATAAATATCATTGTTT
chr7	46654460	46654461	chr7:46654461:C:T	rs34731851	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr7	46786372	46786373	chr7:46786373:T:A	rs1046610668	T	A	T	Sox3.mouse_HMG_1	16	1	-	2.637667748691956	4.037350834170176	GAGCAATTGAATTTTTA
chr7	46826609	46826610	chr7:46826610:C:T	rs9791388	C	T	c	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr7	46900237	46900238	chr7:46900238:T:C	rs4573162	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	46934855	46934856	chr7:46934856:T:G	rs118147395	T	G	T	Sox3.mouse_HMG_1	15	1	-	2.0899703740535305	1.284312198050518	CAACAAGAATATAGTAT
chr7	47139763	47139764	chr7:47139764:A:T	rs1583674	A	T	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr7	47294048	47294049	chr7:47294049:C:T	rs57198477	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr7	47294059	47294060	chr7:47294060:G:A	rs149268955	G	A	G	Sox3.mouse_HMG_1	2	1	+	1.2231516647946672	5.631086643775129	TTGCAATGACAGTGTGG
chr7	47509571	47509572	chr7:47509572:G:A	rs182838	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr7	47561483	47561484	chr7:47561484:C:T	rs12155302	C	T	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr7	47699955	47699956	chr7:47699956:G:A	rs67043063	G	A	A	Sox3.mouse_HMG_1	3	1	-	2.5254912606896354	-3.457284857444685	TAACAGTTACATTGGTG
chr7	47768460	47768461	chr7:47768461:C:T	rs11971419	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr7	47771702	47771703	chr7:47771703:T:C	rs150187937	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.8540909952963505	-3.2557999199523566	TCACAATGAAAGTATTT
chr7	47795184	47795185	chr7:47795185:C:T	rs62448551	C	T	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr7	48173819	48173820	chr7:48173820:G:A	rs148427735	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr7	48280242	48280243	chr7:48280243:C:A	rs565360336	C	A	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr7	48300435	48300436	chr7:48300436:A:C	rs1852266	A	C	c	Sox3.mouse_HMG_1	2	1	+	2.0418560160279053	-4.383478863693405	AAAGAAGGTCAGTGTTA
chr7	48754087	48754088	chr7:48754088:G:T	rs77590426	G	T	G	Sox3.mouse_HMG_1	3	1	-	1.4669534630276586	-5.257759999836041	AAACCAGAGAAGTGTTT
chr7	48964399	48964400	chr7:48964400:A:G	rs17132833	A	G	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr7	49024016	49024017	chr7:49024017:C:A	rs7791409	C	A	C	Sox3.mouse_HMG_1	13	1	-	4.819986102450424	-1.5491335129451107	AAACACTGTTAGAGTTT
chr7	49531004	49531005	chr7:49531005:T:A	rs10277364	T	A	T	Sox3.mouse_HMG_1	4	1	-	0.8144446431620662	-5.49986378334176	GAACAGTGTTGGTGTTA
chr7	49876644	49876645	chr7:49876645:T:C	rs900649	T	C	T	Sox3.mouse_HMG_1	12	1	+	1.8305077003792443	-4.3759578848386065	GAAGAATTGCCTTGTTG
chr7	50151619	50151620	chr7:50151620:G:T	rs10260654	G	T	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr7	50306210	50306211	chr7:50306211:T:C	rs79391891	T	C	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr7	50369249	50369250	chr7:50369250:A:G	rs12718731	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr7	50501810	50501811	chr7:50501811:C:T	rs2329369	C	T	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr7	50648785	50648786	chr7:50648786:A:G	rs3819428	A	G	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr7	50648786	50648787	chr7:50648787:G:A	rs2529421	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr7	50784026	50784027	chr7:50784027:A:G	rs7786917	A	G	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr7	51748903	51748904	chr7:51748904:G:A	rs749669540	G	A	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr7	51951267	51951268	chr7:51951268:C:T	rs139267375	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr7	52384632	52384633	chr7:52384633:C:A	rs56413106	C	A	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	52652662	52652663	chr7:52652663:C:T	rs4947735	C	T	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr7	52709662	52709663	chr7:52709663:C:T	rs890636	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr7	52834703	52834704	chr7:52834704:A:G	rs2965626	A	G	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr7	53659132	53659133	chr7:53659133:C:T	rs10225959	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr7	54810461	54810462	chr7:54810462:A:G	rs1919827	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr7	55074960	55074961	chr7:55074961:A:G	rs3800827	A	G	A	Sox3.mouse_HMG_1	8	1	+	2.2247021461867083	1.1982886711760734	AAACAATCACATTCATG
chr7	55074966	55074967	chr7:55074967:A:G	rs79186456	A	G	A	Sox3.mouse_HMG_1	14	1	+	2.2247021461867083	1.0835302430998028	AAACAATCACATTCATG
chr7	55099451	55099452	chr7:55099452:G:A	rs10225425	G	A	G	Sox3.mouse_HMG_1	7	1	+	2.8176005608800914	2.3215302411027814	GGACAATGTCCTTGTCT
chr7	55140583	55140584	chr7:55140584:G:A	rs4947982	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr7	55140590	55140591	chr7:55140591:C:A	rs4947983	C	A	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr7	55206390	55206391	chr7:55206391:T:C	rs884225	T	C	T	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr7	55536705	55536706	chr7:55536706:A:C	rs17565995	A	C	A	Sox3.mouse_HMG_1	14	1	+	6.089395851994398	5.264982285440783	GAACAATGACACTGATA
chr7	56065510	56065511	chr7:56065511:C:T	rs7793614	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr7	56226587	56226588	chr7:56226588:C:T	rs1722282	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr7	56482923	56482924	chr7:56482924:G:C	rs10237408	G	C	N	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr7	56806631	56806632	chr7:56806632:G:A	rs148648344	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr7	57217340	57217341	chr7:57217341:G:T	rs113700686	G	T	-	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr7	57307678	57307679	chr7:57307679:G:A	rs7805193	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr7	57329003	57329004	chr7:57329004:C:T	rs73699759	C	T	c	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr7	61494619	61494620	chr7:61494620:A:T	rs1462604305	A	T	.	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr7	61792549	61792550	chr7:61792550:T:C	rs1342040439	T	C	.	Sox3.mouse_HMG_1	9	1	+	4.9363689061062015	4.972075030990769	GGACAAAAATAGTGTTT
chr7	62204282	62204283	chr7:62204283:A:G	rs146310699	A	G	.	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr7	62227720	62227721	chr7:62227721:C:T	rs9692103	C	T	.	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr7	63030453	63030454	chr7:63030454:C:A	rs62476323	C	A	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr7	64471173	64471174	chr7:64471174:C:A	rs80216832	C	A	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr7	64951614	64951615	chr7:64951615:G:C	rs62455631	G	C	G	Sox3.mouse_HMG_1	11	1	+	2.089055397113111	-1.8404220449863617	AAATAACTTTAGTGTTG
chr7	64999430	64999431	chr7:64999431:C:T	rs73141516	C	T	.	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr7	64999458	64999459	chr7:64999459:G:A	rs146918419	G	A	.	Sox3.mouse_HMG_1	13	1	+	4.026014742350851	-2.082091047675065	GAACAATGACAGGGCTT
chr7	64999459	64999460	chr7:64999460:C:T	rs114491128	C	T	.	Sox3.mouse_HMG_1	14	1	+	4.026014742350851	10.135905657599558	GAACAATGACAGGGCTT
chr7	65091768	65091769	chr7:65091769:G:C	rs77255047	G	C	.	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	65091795	65091796	chr7:65091796:T:C	rs73702450	T	C	.	Sox3.mouse_HMG_1	14	1	+	2.5883812463081872	-3.52150966894052	AAAAAATAATACTGTCT
chr7	65231947	65231948	chr7:65231948:C:G	rs2900858	C	G	c	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr7	66296168	66296169	chr7:66296169:A:G	rs531588938	A	G	a	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr7	66356244	66356245	chr7:66356245:A:C	rs1009244144	A	C	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr7	66630750	66630751	chr7:66630751:A:G	rs1638735	A	G	.	Sox3.mouse_HMG_1	10	1	+	1.1760313933094806	-5.732213765661858	GGAAAATGATATGGTTT
chr7	66720754	66720755	chr7:66720755:C:T	rs73137963	C	T	c	Sox3.mouse_HMG_1	13	1	-	1.700274323890261	-4.407831466135655	CAATAAGAACAGTGTTA
chr7	66721258	66721259	chr7:66721259:C:T	rs2141924	C	T	c	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr7	66855491	66855492	chr7:66855492:C:T	rs7796977	C	T	.	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr7	67128126	67128127	chr7:67128127:A:G	rs116210943	A	G	A	Sox3.mouse_HMG_1	9	1	-	2.129282984472342	2.1649891093569105	GAACAAAAGTAGTATTT
chr7	67137541	67137542	chr7:67137542:A:G	rs79302106	A	G	A	Sox3.mouse_HMG_1	14	1	-	4.288764757305901	-1.821126157942806	GCCCAATGGAATTGTTT
chr7	67307819	67307820	chr7:67307820:G:C	rs117513367	G	C	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr7	67644476	67644477	chr7:67644477:G:A	rs34132934	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr7	68217979	68217980	chr7:68217980:C:T	rs62457276	C	T	C	Sox3.mouse_HMG_1	13	1	-	0.5746885362249466	-5.533417253800969	GAACACCTCCAGTGTTT
chr7	68321859	68321860	chr7:68321860:T:C	rs73399849	T	C	T	Sox3.mouse_HMG_1	14	1	+	1.288826676675852	-4.8210642385728555	CAACAATAACACCGTGT
chr7	68364888	68364889	chr7:68364889:G:T	rs13234286	G	T	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr7	68560972	68560973	chr7:68560973:G:A	rs10240115	G	A	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr7	68996859	68996860	chr7:68996860:T:C	rs6460478	T	C	T	Sox3.mouse_HMG_1	15	1	+	3.1827461514791087	-1.1197556463163743	AGACAATCACATTCTTG
chr7	69596711	69596712	chr7:69596712:G:C	rs2253711	G	C	C	Sox3.mouse_HMG_1	2	1	+	5.091709078055839	3.074309177314988	AAGCTATTAAATTGTTA
chr7	70063593	70063594	chr7:70063594:G:A	rs17365011	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr7	70487273	70487274	chr7:70487274:C:G	rs12154972	C	G	G	Sox3.mouse_HMG_1	7	1	-	0.8343009735150044	-4.786391161409768	CAACATCGCCAGTGTTG
chr7	70539237	70539238	chr7:70539238:T:C	rs75553990	T	C	T	Sox3.mouse_HMG_1	12	1	-	2.57794919027957	1.5980131932450592	AAACAACAACATAGTAA
chr7	70539242	70539243	chr7:70539243:T:C	rs893921946	T	C	T	Sox3.mouse_HMG_1	7	1	-	2.57794919027957	3.07401951005688	AAACAACAACATAGTAA
chr7	70566285	70566286	chr7:70566286:T:C	rs2189962	T	C	C	Sox3.mouse_HMG_1	6	1	+	8.261981299958565	1.6158905303296458	AAACATTTACATTGTAT
chr7	70728203	70728204	chr7:70728204:A:T	rs12533769	A	T	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr7	71402758	71402759	chr7:71402759:A:C	rs34419262	A	C	A	Sox3.mouse_HMG_1	6	1	-	10.978187987265388	4.06973295316898	AAACAATGCCAGTGTGA
chr7	71645045	71645046	chr7:71645046:T:C	rs6949744	T	C	C	Sox3.mouse_HMG_1	6	1	+	1.2015519799535452	-5.4445387896753745	CAACCATGGCAGGGTTG
chr7	71739538	71739539	chr7:71739539:T:C	rs73177692	T	C	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr7	72211843	72211844	chr7:72211844:C:G	chr7:72211844:C:G	C	G	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr7	72366949	72366950	chr7:72366950:T:C	rs2944799	T	C	t	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr7	72542865	72542866	chr7:72542866:G:A	rs10229194	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr7	73467476	73467477	chr7:73467477:C:T	rs71556715	C	T	C	Sox3.mouse_HMG_1	8	1	-	1.584877522492993	2.611290997503628	AGGCAAGAGAATTGTTT
chr7	73787626	73787627	chr7:73787627:G:T	rs59773062	G	T	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr7	74628494	74628495	chr7:74628495:A:C	rs111361634	A	C	A	Sox3.mouse_HMG_1	8	1	+	1.698510208669016	0.5659497452899399	CAACATTGAAAGTGGTT
chr7	75870248	75870249	chr7:75870249:G:T	rs60950650	G	T	-	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr7	75870258	75870259	chr7:75870259:G:A	rs118097700	G	A	-	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr7	75957678	75957679	chr7:75957679:T:A	rs4732510	T	A	T	Sox3.mouse_HMG_1	5	1	-	2.159970845630829	-4.748484188465581	AAAAAATACAAGTGCTT
chr7	76300408	76300409	chr7:76300409:A:G	chr7:76300409:A:G	A	G	A	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr7	76342858	76342859	chr7:76342859:G:A	rs553873131	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr7	76599823	76599824	chr7:76599824:A:G	rs10258554	A	G	a	Sox3.mouse_HMG_1	10	1	-	5.715062945935266	5.963342470521018	AGACAATAAATTTGTTA
chr7	77238381	77238382	chr7:77238382:A:G	rs17804250	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr7	77253733	77253734	chr7:77253734:G:T	rs12672474	G	T	G	Sox3.mouse_HMG_1	11	1	+	4.1265588991701	6.25453756603098	AAACAAGGAAAGAGTTT
chr7	77268181	77268182	chr7:77268182:G:C	rs10224522	G	C	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr7	77450743	77450744	chr7:77450744:C:A	rs1017036	C	A	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr7	77771989	77771990	chr7:77771990:T:C	rs6465816	T	C	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr7	78020810	78020811	chr7:78020811:T:G	rs2471591	T	G	G	Sox3.mouse_HMG_1	10	1	-	3.547628105106699	-3.0170273494745627	AAAAAATGATAGTTTTA
chr7	78090844	78090845	chr7:78090845:T:G	rs73362682	T	G	T	Sox3.mouse_HMG_1	6	1	-	2.7125578829845143	2.9749221474520047	CAACAAAGGCATGGTTA
chr7	78130649	78130650	chr7:78130650:G:C	rs986880	G	C	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr7	78471039	78471040	chr7:78471040:A:G	rs10235821	A	G	A	Sox3.mouse_HMG_1	10	1	+	11.723118796866467	4.81487363789513	AAACATTTATATTGTTT
chr7	78850423	78850424	chr7:78850424:T:G	rs576744	T	G	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr7	79298424	79298425	chr7:79298425:C:T	rs12666243	C	T	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr7	79298465	79298466	chr7:79298466:C:T	rs12666679	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr7	79333997	79333998	chr7:79333998:C:T	rs1528264	C	T	T	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr7	79683742	79683743	chr7:79683743:C:T	rs10499844	C	T	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr7	79820109	79820110	chr7:79820110:T:C	rs1922738	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr7	79856466	79856467	chr7:79856467:G:A	rs79113028	G	A	G	Sox3.mouse_HMG_1	1	1	-	2.505810287285861	3.2533262572727724	ACACAATAGAATAGTAT
chr7	80027347	80027348	chr7:80027348:G:A	rs117944463	G	A	G	Sox3.mouse_HMG_1	3	1	-	3.0816453631958374	-2.901130754938484	TAACATTGCTACTGTTG
chr7	80027752	80027753	chr7:80027753:A:G	rs17153254	A	G	A	Sox3.mouse_HMG_1	14	1	-	2.2022192781696868	-3.9076716370790203	CAACAAGGGAAGTGTAA
chr7	80028015	80028016	chr7:80028016:T:C	rs6466887	T	C	T	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr7	80028048	80028049	chr7:80028049:C:T	rs6466888	C	T	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr7	80089300	80089301	chr7:80089301:T:A	rs4731198	T	A	A	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr7	80185802	80185803	chr7:80185803:A:C	rs62462670	A	C	A	Sox3.mouse_HMG_1	5	1	+	1.7942761386849626	-5.018868715607123	AGAAAATACCAGTGTTC
chr7	80307503	80307504	chr7:80307504:G:A	rs74593755	G	A	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr7	80324020	80324021	chr7:80324021:A:C	rs570591990	A	C	A	Sox3.mouse_HMG_1	1	1	+	2.1454144678108698	-3.492440428450238	AAACAATGTAAATGGAT
chr7	80496713	80496714	chr7:80496714:C:G	rs113016841	C	G	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr7	80604403	80604404	chr7:80604404:A:G	rs1205467	A	G	a	Sox3.mouse_HMG_1	6	1	-	1.0567828421986252	-5.589307927430295	AACCAATGGCATACTTT
chr7	80620002	80620003	chr7:80620003:G:A	rs6960369	G	A	G	Sox3.mouse_HMG_1	2	1	+	3.933999328361212	8.341934307341674	GAGCAAAGAAAGTGTTT
chr7	80636751	80636752	chr7:80636752:A:G	rs1334511	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr7	80753708	80753709	chr7:80753709:A:C	rs75518946	A	C	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	80852065	80852066	chr7:80852066:C:T	rs17154550	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr7	80852090	80852091	chr7:80852091:G:A	rs368226677	G	A	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr7	81111867	81111868	chr7:81111868:A:G	rs76466872	A	G	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr7	81138945	81138946	chr7:81138946:G:A	rs3914075	G	A	G	Sox3.mouse_HMG_1	3	1	-	3.206704805119159	-2.7760713130151613	AAACGATAAAAGTATTT
chr7	81173508	81173509	chr7:81173509:T:A	rs327679	T	A	T	Sox3.mouse_HMG_1	11	1	-	6.780622789827956	12.643078883734583	AAACAATGAAAATATTT
chr7	81210179	81210180	chr7:81210180:T:A	rs6948442	T	A	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr7	81342038	81342039	chr7:81342039:A:C	rs17551973	A	C	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr7	81420711	81420712	chr7:81420712:T:C	rs141332486	T	C	T	Sox3.mouse_HMG_1	6	1	+	4.984410719926805	-1.661680049702116	AAATAATGATAGTCTTG
chr7	81430753	81430754	chr7:81430754:T:C	rs2906207	T	C	C	Sox3.mouse_HMG_1	5	1	-	4.7560954489563025	-1.9700380283461516	GAACAATGACATGCTTA
chr7	81483026	81483027	chr7:81483027:C:T	rs74527983	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr7	81605582	81605583	chr7:81605583:A:C	rs76702992	A	C	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr7	81630716	81630717	chr7:81630717:T:A	rs3926968	T	A	T	Sox3.mouse_HMG_1	8	1	-	5.675513465803525	4.855692227334992	AAACACTGACAGAGTTT
chr7	81630720	81630721	chr7:81630721:T:A	rs3926969	T	A	T	Sox3.mouse_HMG_1	4	1	-	5.675513465803525	-0.6387949607003013	AAACACTGACAGAGTTT
chr7	81676989	81676990	chr7:81676990:A:T	chr7:81676990:A:T	A	T	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr7	81720095	81720096	chr7:81720096:T:C	rs5745709	T	C	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr7	82035534	82035535	chr7:82035535:A:G	rs10235670	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr7	82374143	82374144	chr7:82374144:C:G	rs978324	C	G	C	Sox3.mouse_HMG_1	13	1	-	1.3988670149951998	-4.709238775030716	AAACATTTACACTGTCT
chr7	83323136	83323137	chr7:83323137:A:G	rs6947059	A	G	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr7	83326199	83326200	chr7:83326200:T:C	rs73709839	T	C	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr7	83362910	83362911	chr7:83362911:C:T	rs2709977	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr7	83494823	83494824	chr7:83494824:C:G	rs2535379	C	G	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr7	83586368	83586369	chr7:83586369:A:G	chr7:83586369:A:G	A	G	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr7	83666357	83666358	chr7:83666358:C:A	rs7807686	C	A	A	Sox3.mouse_HMG_1	16	1	-	1.4117201095768745	2.377571750333987	AACCAATTCTAGGGTTG
chr7	83852444	83852445	chr7:83852445:A:G	rs7778838	A	G	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr7	84040284	84040285	chr7:84040285:A:G	rs4732536	A	G	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr7	84081059	84081060	chr7:84081060:G:A	rs62473957	G	A	g	Sox3.mouse_HMG_1	14	1	+	3.4758042181054343	4.61697612119234	AAACAATGCAAGAGGTT
chr7	84138439	84138440	chr7:84138440:C:T	rs10244779	C	T	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr7	84145638	84145639	chr7:84145639:C:G	chr7:84145639:C:G	C	G	C	Sox3.mouse_HMG_1	16	1	-	2.1901322906057854	-0.4458127342580842	CAACCATAACAGTGCTG
chr7	84237575	84237576	chr7:84237576:A:T	rs10257450	A	T	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr7	84246240	84246241	chr7:84246241:C:G	rs144033399	C	G	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr7	84246256	84246257	chr7:84246257:G:A	rs56021068	G	A	g	Sox3.mouse_HMG_1	6	1	-	8.608250282339112	15.254341051968028	AAACAACGAAATTGTAT
chr7	84364863	84364864	chr7:84364864:T:G	rs954954858	T	G	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr7	84549231	84549232	chr7:84549232:C:T	rs73192708	C	T	C	Sox3.mouse_HMG_1	9	1	+	2.9978644476160654	2.962158322731496	AAACAATTACAGCTTTG
chr7	85060676	85060677	chr7:85060677:A:T	rs2286190	A	T	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr7	85150795	85150796	chr7:85150796:C:T	rs67300322	C	T	C	Sox3.mouse_HMG_1	10	1	+	3.4105013865299916	3.1622218619442397	TAACAATGCCCTTATTG
chr7	85384639	85384640	chr7:85384640:A:G	rs10234933	A	G	A	Sox3.mouse_HMG_1	10	1	+	4.227067846589639	-2.6811773123816987	AAGCAATTACAGTGTCC
chr7	85384641	85384642	chr7:85384642:T:C	rs2030624	T	C	T	Sox3.mouse_HMG_1	12	1	+	4.227067846589639	-1.979397738628212	AAGCAATTACAGTGTCC
chr7	85463213	85463214	chr7:85463214:C:T	rs10275403	C	T	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr7	85483380	85483381	chr7:85483381:T:C	rs1464662	T	C	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr7	85587748	85587749	chr7:85587749:C:A	rs182264820	C	A	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr7	85635229	85635230	chr7:85635230:A:G	rs4604361	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr7	85971544	85971545	chr7:85971545:T:G	rs7781135	T	G	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr7	85987894	85987895	chr7:85987895:C:A	rs6465034	C	A	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr7	86211916	86211917	chr7:86211917:T:C	rs75215319	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr7	86442653	86442654	chr7:86442654:C:T	rs13245412	C	T	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr7	86780722	86780723	chr7:86780723:G:C	rs6970642	G	C	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr7	86993466	86993467	chr7:86993467:T:C	rs1767697	T	C	T	Sox3.mouse_HMG_1	4	1	-	7.63993539545136	0.8276103034741259	TAATAATGGTATTGTAT
chr7	87322760	87322761	chr7:87322761:T:C	rs1636914	T	C	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr7	88523084	88523085	chr7:88523085:G:A	rs62461983	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr7	88707348	88707349	chr7:88707349:T:C	rs1858847	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr7	88928868	88928869	chr7:88928869:T:C	rs1528932	T	C	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr7	89054642	89054643	chr7:89054643:A:T	rs2188248	A	T	A	Sox3.mouse_HMG_1	16	1	-	2.222925591675979	0.8232425061977593	GAAAAATAGAGTTGTTT
chr7	89680614	89680615	chr7:89680615:C:T	rs10952962	C	T	T	Sox3.mouse_HMG_1	11	1	-	5.898915976493841	2.1644385494480938	CCACAATGAAAGTGTAT
chr7	89680631	89680632	chr7:89680632:T:C	rs10261097	T	C	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr7	89681834	89681835	chr7:89681835:G:A	rs10250190	G	A	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr7	89681844	89681845	chr7:89681845:G:A	rs10250195	G	A	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr7	89966639	89966640	chr7:89966640:A:G	rs10487089	A	G	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr7	90180946	90180947	chr7:90180947:T:C	rs10224488	T	C	T	Sox3.mouse_HMG_1	12	1	+	2.608057854745461	-3.598407730472391	GAAGAATGTCAGTTTTT
chr7	90384796	90384797	chr7:90384797:G:T	rs9886362	G	T	T	Sox3.mouse_HMG_1	13	1	+	0.9369568774113883	-5.432162737984146	GAAAAATGCTGGTGTTG
chr7	90599924	90599925	chr7:90599925:A:G	rs6945415	A	G	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr7	90788625	90788626	chr7:90788626:G:A	rs17163207	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr7	91043588	91043589	chr7:91043589:G:T	rs34435827	G	T	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr7	91461464	91461465	chr7:91461465:T:C	rs4076028	T	C	T	Sox3.mouse_HMG_1	1	1	-	6.871144789149951	2.5437114457472596	AAAGAATGACATTGGTT
chr7	91894943	91894944	chr7:91894944:A:T	rs10280301	A	T	A	Sox3.mouse_HMG_1	8	1	-	4.292221157834861	5.112042396303395	GAAGAATGTCTTTGTTT
chr7	92795517	92795518	chr7:92795518:T:C	rs539087741	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr7	93014062	93014063	chr7:93014063:A:G	rs6948574	A	G	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr7	93117647	93117648	chr7:93117648:C:T	rs10233715	C	T	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr7	93142385	93142386	chr7:93142386:G:T	rs948146819	G	T	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr7	93640268	93640269	chr7:93640269:T:C	rs62465535	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr7	93923188	93923189	chr7:93923189:A:G	rs7785521	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.1141424935985627	-4.611990983703892	AAACAATGGAAATGAAG
chr7	93984425	93984426	chr7:93984426:C:T	rs2041518	C	T	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr7	94065025	94065026	chr7:94065026:A:T	rs11976738	A	T	A	Sox3.mouse_HMG_1	11	1	+	4.997125169670392	10.859581263577018	AAACAATAGAAATTTTT
chr7	94065049	94065050	chr7:94065050:G:C	rs562373815	G	C	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr7	94241134	94241135	chr7:94241135:G:A	rs6959259	G	A	A	Sox3.mouse_HMG_1	8	1	+	1.5988037005090485	2.6252171755196834	AAACAATCGCATTGGGG
chr7	94334007	94334008	chr7:94334008:G:A	rs1557657	G	A	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr7	94404487	94404488	chr7:94404488:A:G	rs406226	A	G	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr7	94415490	94415491	chr7:94415491:C:A	rs2250365	C	A	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr7	94426620	94426621	chr7:94426621:T:C	rs13240759	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr7	94633984	94633985	chr7:94633985:A:G	rs147103554	A	G	A	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr7	94851869	94851870	chr7:94851870:C:T	rs11769571	C	T	T	Sox3.mouse_HMG_1	13	1	-	3.1470210674066297	-2.9610847226192862	AAATAATGCTTGTGTTG
chr7	94922752	94922753	chr7:94922753:T:C	rs547444502	T	C	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr7	95210131	95210132	chr7:95210132:T:G	rs11762113	T	G	T	Sox3.mouse_HMG_1	15	1	-	3.0342537432277874	2.228595567224775	GAGAAATGCTATTGTAT
chr7	95425027	95425028	chr7:95425028:T:C	rs11981433	T	C	T	Sox3.mouse_HMG_1	10	1	-	2.6198955395775076	-4.2883496193938315	GAGCAATGCCATTTTCT
chr7	95537891	95537892	chr7:95537892:C:T	rs6465467	C	T	T	Sox3.mouse_HMG_1	8	1	-	3.7927573991654597	4.819170874176096	GATTAATGGCAGTGTTT
chr7	95582330	95582331	chr7:95582331:T:A	rs7811683	T	A	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr7	95611422	95611423	chr7:95611423:C:A	rs7787663	C	A	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr7	95611434	95611435	chr7:95611435:C:T	rs112988987	C	T	C	Sox3.mouse_HMG_1	16	1	-	9.547326432369003	9.113494987647895	GAACAATAAAATTTTTG
chr7	95630299	95630300	chr7:95630300:T:C	rs7777424	T	C	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr7	95690895	95690896	chr7:95690896:A:G	rs75095752	A	G	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr7	95775259	95775260	chr7:95775260:G:A	rs1382620	G	A	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr7	95775689	95775690	chr7:95775690:C:T	rs983351	C	T	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr7	95922801	95922802	chr7:95922802:A:G	rs319325	A	G	A	Sox3.mouse_HMG_1	10	1	+	2.598583448558532	-4.309661710412807	GAACTATTTAATTATTT
chr7	95925603	95925604	chr7:95925604:A:C	rs10280608	A	C	A	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr7	96035309	96035310	chr7:96035310:T:C	rs7796312	T	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr7	96052962	96052963	chr7:96052963:T:G	rs2299282	T	G	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr7	96074985	96074986	chr7:96074986:A:G	rs73232556	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr7	96400698	96400699	chr7:96400699:A:G	rs7784197	A	G	A	Sox3.mouse_HMG_1	2	1	+	2.1637851984158574	-2.244149780564605	GAACAACCTAAGTGTTT
chr7	96832336	96832337	chr7:96832337:T:C	rs1947228	T	C	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr7	96833765	96833766	chr7:96833766:C:T	rs576129699	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr7	96926645	96926646	chr7:96926646:A:G	rs1207683	A	G	a	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr7	97399951	97399952	chr7:97399952:T:C	rs79552220	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr7	97467526	97467527	chr7:97467527:T:A	rs34492460	T	A	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr7	97851882	97851883	chr7:97851883:A:C	rs114630405	A	C	.	Sox3.mouse_HMG_1	1	1	+	4.80110698695931	-0.8367479093018013	GAACAAAAATAGTGTAG
chr7	97851915	97851916	chr7:97851916:T:A	rs75618284	T	A	.	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr7	97987497	97987498	chr7:97987498:C:A	rs4729399	C	A	.	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr7	98058263	98058264	chr7:98058264:A:G	rs17169258	A	G	G	Sox3.mouse_HMG_1	11	1	+	1.9422055840905894	5.676683011136337	GAACAATGACCATGTAG
chr7	98360739	98360740	chr7:98360740:C:T	rs185163839	C	T	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr7	98810134	98810135	chr7:98810135:C:T	rs10245517	C	T	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr7	98863438	98863439	chr7:98863439:G:A	rs1548622	G	A	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr7	98942499	98942500	chr7:98942500:T:C	rs2237598	T	C	C	Sox3.mouse_HMG_1	10	1	-	9.093519209603054	2.185274050631714	CTACAATTACAGTGTTG
chr7	99750704	99750705	chr7:99750705:T:C	rs6945984	T	C	C	Sox3.mouse_HMG_1	10	1	-	1.3061301075355665	-5.6021150514357725	AGACGATGCTAGTGTAG
chr7	101434773	101434774	chr7:101434774:G:C	rs13238748	G	C	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr7	101593925	101593926	chr7:101593926:G:A	rs12113459	G	A	g	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	101788256	101788257	chr7:101788257:A:G	rs2529214	A	G	g	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr7	101837916	101837917	chr7:101837917:C:T	rs2906745	C	T	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr7	102106410	102106411	chr7:102106411:G:T	rs10271376	G	T	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr7	102203617	102203618	chr7:102203618:A:G	rs6465852	A	G	G	Sox3.mouse_HMG_1	14	1	-	3.676864503897657	-2.43302641135105	AAACAAGTTCAATGTTA
chr7	102404630	102404631	chr7:102404631:G:A	rs79339832	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr7	102892155	102892156	chr7:102892156:C:T	rs146557198	C	T	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr7	102912729	102912730	chr7:102912730:T:C	rs143000377	T	C	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr7	102933856	102933857	chr7:102933857:A:G	chr7:102933857:A:G	A	G	A	Sox3.mouse_HMG_1	15	1	-	5.54048688579118	1.2379850879956975	GAACAATGAAAGTATTC
chr7	102943565	102943566	chr7:102943566:A:G	rs13242493	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr7	102993467	102993468	chr7:102993468:A:G	rs57734320	A	G	a	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr7	103167239	103167240	chr7:103167240:G:A	rs76284802	G	A	g	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr7	103167240	103167241	chr7:103167241:C:T	rs77438725	C	T	c	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr7	103614475	103614476	chr7:103614476:T:C	rs147883951	T	C	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr7	103826686	103826687	chr7:103826687:T:C	rs11977571	T	C	T	Sox3.mouse_HMG_1	15	1	+	2.7837875305928463	-1.5187142672026368	AATCAATTCTAGTGATA
chr7	104267721	104267722	chr7:104267722:C:A	rs4729988	C	A	A	Sox3.mouse_HMG_1	13	1	-	2.4608583928557834	-3.9082612225397515	AGTCAATTGAATTGTAT
chr7	104530975	104530976	chr7:104530976:A:G	rs985409	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr7	104605159	104605160	chr7:104605160:T:A	rs7801040	T	A	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr7	104706864	104706865	chr7:104706865:A:G	rs6966224	A	G	a	Sox3.mouse_HMG_1	11	1	-	5.2854656807290645	-0.7719904282312873	AAAGAATGGAATTGTGG
chr7	104958000	104958001	chr7:104958001:T:C	rs6466030	T	C	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr7	105012287	105012288	chr7:105012288:C:T	rs77205034	C	T	C	Sox3.mouse_HMG_1	16	1	+	7.0759252575560225	10.677721923177005	AAGCAATTAAAGTGTTC
chr7	105049294	105049295	chr7:105049295:T:C	rs960437	T	C	C	Sox3.mouse_HMG_1	11	1	+	4.863609655458185	-1.1938464535021678	AAAAAATACCATAGTTA
chr7	105771633	105771634	chr7:105771634:T:C	rs1204376	T	C	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr7	106276190	106276191	chr7:106276191:C:A	rs2058539	C	A	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr7	106643383	106643384	chr7:106643384:A:G	rs2057904	A	G	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr7	107507084	107507085	chr7:107507085:C:A	rs11974387	C	A	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr7	108099908	108099909	chr7:108099909:T:C	rs73197610	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr7	108099951	108099952	chr7:108099952:C:G	rs73725332	C	G	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr7	108181951	108181952	chr7:108181952:G:A	rs2142325	G	A	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr7	108203503	108203504	chr7:108203504:A:G	rs10953560	A	G	A	Sox3.mouse_HMG_1	7	1	+	2.827120802352807	3.323191122130119	GATCAATAACATTGCAT
chr7	108346316	108346317	chr7:108346317:G:A	rs10953563	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr7	108460097	108460098	chr7:108460098:A:T	rs77555472	A	T	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr7	109129370	109129371	chr7:109129371:A:G	rs74301807	A	G	A	Sox3.mouse_HMG_1	10	1	+	2.9769182569071635	-3.931326902064174	TAACAATAGCAGAGTGA
chr7	109229837	109229838	chr7:109229838:G:A	rs12113204	G	A	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr7	109229884	109229885	chr7:109229885:T:C	rs7791798	T	C	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr7	109694312	109694313	chr7:109694313:C:T	rs7801297	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr7	109953745	109953746	chr7:109953746:C:T	rs6960389	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr7	110017513	110017514	chr7:110017514:T:C	rs184800515	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr7	110539732	110539733	chr7:110539733:A:G	rs55735006	A	G	A	Sox3.mouse_HMG_1	5	1	+	8.282679080197703	1.556545602895246	AATCAATGAAATTGTGT
chr7	111076782	111076783	chr7:111076783:C:T	rs117677570	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr7	111214870	111214871	chr7:111214871:T:C	rs28758789	T	C	T	Sox3.mouse_HMG_1	4	1	-	1.97801439962091	-4.834310692356328	AAACAAAACAAGTCTTT
chr7	111474744	111474745	chr7:111474745:T:C	rs76306865	T	C	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr7	111476054	111476055	chr7:111476055:C:A	chr7:111476055:C:A	C	A	C	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr7	112356896	112356897	chr7:112356897:T:C	rs12113634	T	C	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr7	112449949	112449950	chr7:112449950:G:C	rs114945979	G	C	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr7	112723458	112723459	chr7:112723459:T:C	rs78846044	T	C	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr7	112874066	112874067	chr7:112874067:C:T	rs10277476	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr7	113715309	113715310	chr7:113715310:G:A	rs17619887	G	A	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr7	114082557	114082558	chr7:114082558:G:A	rs116884647	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	114082576	114082577	chr7:114082577:T:A	rs7803667	T	A	T	Sox3.mouse_HMG_1	6	1	+	2.7652410017638847	-4.1432140323325255	GAAAAATTATATTTTTA
chr7	114484604	114484605	chr7:114484605:C:G	rs6974757	C	G	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr7	114599392	114599393	chr7:114599393:G:A	rs75348161	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	114660661	114660662	chr7:114660662:T:C	rs12154391	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr7	114882142	114882143	chr7:114882143:T:G	rs4730652	T	G	G	Sox3.mouse_HMG_1	7	1	-	3.2749670735912244	-1.8496547415562363	GAGCAATACCAGTGGTG
chr7	115013984	115013985	chr7:115013985:C:T	rs6961386	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr7	115054607	115054608	chr7:115054608:T:C	rs2709480	T	C	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr7	115288122	115288123	chr7:115288123:A:G	rs13224705	A	G	G	Sox3.mouse_HMG_1	15	1	-	3.894440346281166	-0.4080614515143173	CAACAATGCTCTAGTTA
chr7	115447649	115447650	chr7:115447650:A:T	rs1554795	A	T	T	Sox3.mouse_HMG_1	4	1	+	5.166294255924857	-1.1480141705789695	GAACAATTAAATTCTGT
chr7	115813615	115813616	chr7:115813616:T:C	rs77695440	T	C	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr7	115842977	115842978	chr7:115842978:T:C	rs10267313	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr7	116177250	116177251	chr7:116177251:T:A	rs140542211	T	A	T	Sox3.mouse_HMG_1	15	1	+	2.7136542050615042	-0.7831894167309669	AAGAAATAACAATGTTT
chr7	116180504	116180505	chr7:116180505:A:C	rs73454551	A	C	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr7	116584780	116584781	chr7:116584781:A:G	rs6466590	A	G	A	Sox3.mouse_HMG_1	5	1	-	6.421305165445901	6.516615345250225	CAACATTGACATTGATT
chr7	116765332	116765333	chr7:116765333:T:C	rs2237717	T	C	C	Sox3.mouse_HMG_1	14	1	+	5.529731092969676	-0.5801598222790312	CATCAATGAAAGTGTTC
chr7	116777155	116777156	chr7:116777156:T:C	rs916941	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr7	117103625	117103626	chr7:117103626:G:A	chr7:117103626:G:A	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr7	117103626	117103627	chr7:117103627:A:T	rs920697498	A	T	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr7	117158658	117158659	chr7:117158659:A:G	rs34791149	A	G	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr7	117194117	117194118	chr7:117194118:C:T	rs73211943	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr7	117716118	117716119	chr7:117716119:A:T	rs148638862	A	T	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr7	117937326	117937327	chr7:117937327:C:T	rs6971964	C	T	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr7	117945724	117945725	chr7:117945725:A:G	rs7782815	A	G	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr7	118136192	118136193	chr7:118136193:C:T	rs2080011	C	T	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr7	118859208	118859209	chr7:118859209:A:G	rs13228009	A	G	A	Sox3.mouse_HMG_1	10	1	+	2.0103536906953354	-4.897891468276005	TCTCAATTACAGTGTTG
chr7	118939056	118939057	chr7:118939057:A:T	rs12669750	A	T	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr7	119118736	119118737	chr7:119118737:C:A	rs150230839	C	A	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr7	119803418	119803419	chr7:119803419:C:T	rs17142336	C	T	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr7	119821219	119821220	chr7:119821220:G:A	rs4730941	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr7	119943913	119943914	chr7:119943914:C:T	rs59779536	C	T	C	Sox3.mouse_HMG_1	13	1	-	0.9833445776253296	-5.124761212400586	TCACAAAAGTAGTGTTG
chr7	120160275	120160276	chr7:120160276:A:G	rs62469497	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.37346304395413	-2.272627725674789	CAACAATAGAATTTTAA
chr7	120282609	120282610	chr7:120282610:A:G	rs184164946	A	G	A	Sox3.mouse_HMG_1	10	1	+	2.802041221982809	-4.10620393698853	AAAAAATAACATTGAAA
chr7	120402032	120402033	chr7:120402033:G:T	rs66843006	G	T	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr7	120827514	120827515	chr7:120827515:C:T	rs6969403	C	T	c	Sox3.mouse_HMG_1	3	1	+	2.34540887414962	-3.6373672439847002	CAACGATAAAATTATTA
chr7	120989215	120989216	chr7:120989216:A:T	rs2525739	A	T	T	Sox3.mouse_HMG_1	16	1	-	3.628706488101005	2.2290234026227855	AAACAATACCAAAGTAT
chr7	121007063	121007064	chr7:121007064:T:C	rs12112966	T	C	T	Sox3.mouse_HMG_1	10	1	-	5.5305404633712	-1.377704695600138	ACACAAGGACAGTGTTT
chr7	121344053	121344054	chr7:121344054:T:G	rs71571022	T	G	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr7	121441646	121441647	chr7:121441647:T:C	rs6466787	T	C	C	Sox3.mouse_HMG_1	1	1	-	4.753402456312631	0.42596911290993694	CAACAATGCATTTGTAG
chr7	121486715	121486716	chr7:121486716:A:T	rs76353195	A	T	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr7	121715057	121715058	chr7:121715058:G:A	rs75902089	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr7	121914736	121914737	chr7:121914737:C:T	rs6946211	C	T	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr7	122140997	122140998	chr7:122140998:A:C	chr7:122140998:A:C	A	C	.	Sox3.mouse_HMG_1	2	1	+	6.578619285544581	0.15328440582326774	AAACCATAATATTTTTT
chr7	122306401	122306402	chr7:122306402:G:A	rs145276894	G	A	G	Sox3.mouse_HMG_1	9	1	-	2.3702314162314573	2.334525291346889	TAATAATGCCAGGGTTT
chr7	122313046	122313047	chr7:122313047:T:C	rs34474804	T	C	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr7	122353016	122353017	chr7:122353017:A:T	rs12667803	A	T	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr7	122390241	122390242	chr7:122390242:T:C	rs10268511	T	C	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr7	122390255	122390256	chr7:122390256:C:G	rs60674414	C	G	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr7	122679471	122679472	chr7:122679472:G:A	rs77466975	G	A	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr7	123207120	123207121	chr7:123207121:T:C	rs34667671	T	C	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr7	123537074	123537075	chr7:123537075:A:T	rs34418989	A	T	a	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr7	123788861	123788862	chr7:123788862:G:T	rs77738210	G	T	G	Sox3.mouse_HMG_1	7	1	+	4.2869689398413335	2.7494198350991788	TAAAAATGTAATTGTAA
chr7	124067030	124067031	chr7:124067031:G:T	rs10227680	G	T	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr7	124275673	124275674	chr7:124275674:G:A	rs1860578	G	A	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr7	124452025	124452026	chr7:124452026:A:C	rs1120715	A	C	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr7	125031960	125031961	chr7:125031961:A:T	rs1351471	A	T	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr7	125489774	125489775	chr7:125489775:T:C	rs73719923	T	C	.	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr7	125640028	125640029	chr7:125640029:A:G	rs7782495	A	G	G	Sox3.mouse_HMG_1	9	1	+	5.057687003923915	0.4746873842025838	AAACAATAAAAATTTTG
chr7	125841138	125841139	chr7:125841139:G:A	rs2402798	G	A	A	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr7	126103951	126103952	chr7:126103952:G:C	rs71576263	G	C	G	Sox3.mouse_HMG_1	7	1	+	1.5157569760725433	-4.104935158852229	GAACATTGTCATTGACT
chr7	126426823	126426824	chr7:126426824:A:G	rs10226585	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr7	126446834	126446835	chr7:126446835:T:A	rs10252001	T	A	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr7	126573276	126573277	chr7:126573277:G:A	rs12674181	G	A	A	Sox3.mouse_HMG_1	13	1	+	1.5451193187968104	-4.562986471229106	ATAGAATGCCAGTGTTC
chr7	127669712	127669713	chr7:127669713:A:C	chr7:127669713:A:C	A	C	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr7	127679316	127679317	chr7:127679317:A:T	rs3808105	A	T	A	Sox3.mouse_HMG_1	5	1	+	2.8744210649854116	-4.0340339691109985	AAAAAATTTTTTTGTTA
chr7	127805539	127805540	chr7:127805540:A:G	rs10251548	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr7	127974547	127974548	chr7:127974548:C:G	rs114239516	C	G	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr7	128066628	128066629	chr7:128066629:G:T	rs3757755	G	T	G	Sox3.mouse_HMG_1	3	1	-	2.8022036608659535	-3.9225098019977453	TAACAATGCAATTAATA
chr7	128066633	128066634	chr7:128066634:T:C	rs3757754	T	C	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr7	128272588	128272589	chr7:128272589:A:G	rs4731438	A	G	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr7	129081669	129081670	chr7:129081670:C:T	rs17425212	C	T	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr7	129103069	129103070	chr7:129103070:C:T	rs1077483	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr7	129115880	129115881	chr7:129115881:T:C	rs59891781	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr7	129456692	129456693	chr7:129456693:A:G	rs753336	A	G	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr7	129598369	129598370	chr7:129598370:T:A	rs10255458	T	A	t	Sox3.mouse_HMG_1	6	1	+	3.3082525097065187	-3.6002025243898914	AAAAAATTTTTTTGTTG
chr7	129941497	129941498	chr7:129941498:C:T	rs1725078	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr7	130334359	130334360	chr7:130334360:C:T	rs7798773	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr7	130352667	130352668	chr7:130352668:A:G	rs11760909	A	G	A	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	130486106	130486107	chr7:130486107:C:T	rs3800564	C	T	C	Sox3.mouse_HMG_1	3	1	-	3.523802369130375	3.706123925924329	AGAGAATAAAATTGTAT
chr7	130900793	130900794	chr7:130900794:T:G	rs157935	T	G	G	Sox3.mouse_HMG_1	5	1	-	1.3993306830194499	-5.4138141712726355	AAACAAAGGCATGGTCT
chr7	130904639	130904640	chr7:130904640:C:T	rs147046488	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr7	130904640	130904641	chr7:130904641:G:A	rs2278747	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr7	131154975	131154976	chr7:131154976:T:C	rs4731759	T	C	t	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr7	131220085	131220086	chr7:131220086:C:T	rs4731769	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr7	131235788	131235789	chr7:131235789:G:A	rs116057203	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr7	131337196	131337197	chr7:131337197:A:G	rs13238544	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.15995436783267	-1.8975017411276827	AAACAAAACCATTCTTA
chr7	131655363	131655364	chr7:131655364:A:C	rs73159569	A	C	a	Sox3.mouse_HMG_1	14	1	-	4.987287919752787	-1.4393613320292102	AAATAATTCCCTTGTTT
chr7	132045766	132045767	chr7:132045767:A:C	rs879404	A	C	C	Sox3.mouse_HMG_1	4	1	+	2.8639905841471376	-3.8613231308404705	AAGCAATAATTTAGTTT
chr7	132091875	132091876	chr7:132091876:G:C	rs1514052	G	C	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr7	132257537	132257538	chr7:132257538:A:G	rs10241293	A	G	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr7	132487599	132487600	chr7:132487600:T:C	rs156927	T	C	T	Sox3.mouse_HMG_1	15	1	+	4.49343308062381	0.19093128282832705	ACACAATTTCAGAGTTT
chr7	132508796	132508797	chr7:132508797:A:T	rs156963	A	T	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr7	132516952	132516953	chr7:132516953:C:T	rs156976	C	T	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr7	132764104	132764105	chr7:132764105:G:C	rs76460034	G	C	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr7	132849183	132849184	chr7:132849184:T:C	rs11763065	T	C	T	Sox3.mouse_HMG_1	10	1	-	4.67998098560029	-2.2282641733710484	CAAGAATGGTATTGTGA
chr7	132940086	132940087	chr7:132940087:A:G	rs10233020	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr7	133051170	133051171	chr7:133051171:C:A	rs10226377	C	A	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr7	133184188	133184189	chr7:133184189:C:T	rs4236642	C	T	-	Sox3.mouse_HMG_1	16	1	-	0.998826866657111	0.5649954219360038	GAGAAATGCTATTGTGG
chr7	133510665	133510666	chr7:133510666:G:A	rs6966473	G	A	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr7	133669380	133669381	chr7:133669381:G:A	rs1007590010	G	A	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr7	133853184	133853185	chr7:133853185:G:C	rs79238907	G	C	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr7	134016777	134016778	chr7:134016778:T:C	chr7:134016778:T:C	T	C	T	Sox3.mouse_HMG_1	12	1	+	3.446285473823683	-2.7601801113941686	GAACATTACTTTTGTTT
chr7	134104434	134104435	chr7:134104435:C:T	rs11982121	C	T	-	Sox3.mouse_HMG_1	7	1	-	3.4695802724518376	2.9735099526745277	AAGCAATGAAATAGATT
chr7	134432734	134432735	chr7:134432735:C:T	chr7:134432735:C:T	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr7	134459426	134459427	chr7:134459427:C:T	rs918824	C	T	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr7	134472612	134472613	chr7:134472613:A:C	rs148429838	A	C	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr7	134521234	134521235	chr7:134521235:T:C	rs10278904	T	C	T	Sox3.mouse_HMG_1	2	1	-	2.427074421808737	-1.980860557171724	TAACATTGAAATTGGTG
chr7	134614137	134614138	chr7:134614138:A:G	rs6966285	A	G	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr7	134672436	134672437	chr7:134672437:A:G	rs73166652	A	G	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr7	134891714	134891715	chr7:134891715:T:C	rs77382246	T	C	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	135098812	135098813	chr7:135098813:T:C	rs6959657	T	C	T	Sox3.mouse_HMG_1	12	1	+	3.5734861818137844	-2.632979403404068	GAAATATGTCATTGTTA
chr7	135291955	135291956	chr7:135291956:C:T	rs141995927	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr7	135592877	135592878	chr7:135592878:C:G	rs11772654	C	G	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr7	135687669	135687670	chr7:135687670:C:G	rs185652380	C	G	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr7	135744925	135744926	chr7:135744926:G:T	rs561341065	G	T	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr7	135798122	135798123	chr7:135798123:A:T	rs62491563	A	T	A	Sox3.mouse_HMG_1	8	1	+	4.729058462446489	3.9092372239779563	CCACAATGATTTTGTTA
chr7	135978128	135978129	chr7:135978129:T:C	rs116077446	T	C	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr7	137127888	137127889	chr7:137127889:C:T	rs17430785	C	T	t	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr7	137341890	137341891	chr7:137341891:A:C	rs320725	A	C	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr7	137539185	137539186	chr7:137539186:G:A	rs834065	G	A	G	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr7	138212506	138212507	chr7:138212507:C:T	rs4142644	C	T	c	Sox3.mouse_HMG_1	13	1	-	1.2998052331295304	-4.808300556896387	AGACAATAGTTTCGTTT
chr7	138244935	138244936	chr7:138244936:A:T	rs2431047	A	T	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr7	139355511	139355512	chr7:139355512:G:A	rs11971779	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr7	139641794	139641795	chr7:139641795:T:C	rs12537804	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr7	139641805	139641806	chr7:139641806:C:T	rs10954650	C	T	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr7	139647814	139647815	chr7:139647815:T:C	rs73156868	T	C	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr7	139725002	139725003	chr7:139725003:G:A	rs59843351	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr7	140376303	140376304	chr7:140376304:T:A	rs4368896	T	A	A	Sox3.mouse_HMG_1	4	1	-	12.168866967316282	5.854558540812454	GAGCAATGTTATTGTTA
chr7	140444297	140444298	chr7:140444298:G:A	rs187251768	G	A	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr7	142061953	142061954	chr7:142061954:G:A	rs11762139	G	A	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr7	142348621	142348622	chr7:142348622:T:C	rs6979216	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr7	142409591	142409592	chr7:142409592:A:C	rs6961143	A	C	A	Sox3.mouse_HMG_1	6	1	-	2.1356418829965427	-4.772813151099864	AAACAATGAACTAGTAG
chr7	142495433	142495434	chr7:142495434:T:A	rs151281392	T	A	.	Sox3.mouse_HMG_1	10	1	-	4.580590460279245	-2.2323445188877686	AAACAAAGAAAATGTTA
chr7	142848636	142848637	chr7:142848637:C:T	rs10250423	C	T	C	Sox3.mouse_HMG_1	13	1	-	4.6615419241839495	-1.446563865841966	GAACAATTCTATGGTAA
chr7	142964150	142964151	chr7:142964151:A:G	rs8175954	A	G	G	Sox3.mouse_HMG_1	16	1	+	4.016732974808534	4.450564419529641	GAACAATGGAATTTTGA
chr7	143263887	143263888	chr7:143263888:T:A	rs553268760	T	A	T	Sox3.mouse_HMG_1	14	1	+	1.3135490582360037	-3.9719282904590885	CAACGATGGCAGTTTTG
chr7	143500272	143500273	chr7:143500273:A:C	rs140255232	A	C	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr7	143500274	143500275	chr7:143500275:T:C	rs2966708	T	C	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr7	143737262	143737263	chr7:143737263:G:A	rs57749006	G	A	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr7	143737263	143737264	chr7:143737264:T:C	rs144919945	T	C	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr7	143935739	143935740	chr7:143935740:A:G	rs13229174	A	G	.	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr7	143936063	143936064	chr7:143936064:T:C	rs13235235	T	C	.	Sox3.mouse_HMG_1	12	1	-	1.8188965753849347	0.8389605783504235	TAACAATGGCATAGAAG
chr7	144027060	144027061	chr7:144027061:T:A	rs965262	T	A	A	Sox3.mouse_HMG_1	2	1	-	5.525756267797839	-0.3763304681589253	AAACGATAATATTTTTG
chr7	144197931	144197932	chr7:144197932:T:C	rs62483777	T	C	N	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr7	144229788	144229789	chr7:144229789:A:G	rs62483825	A	G	N	Sox3.mouse_HMG_1	0	1	-	5.031732484785228	5.465295297749274	TAACAATGAAATAATTT
chr7	144379670	144379671	chr7:144379671:A:G	rs1612590	A	G	g	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr7	144738857	144738858	chr7:144738858:T:C	rs143415046	T	C	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr7	144738878	144738879	chr7:144738879:C:T	rs146813106	C	T	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr7	144738893	144738894	chr7:144738894:C:A	rs139650621	C	A	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr7	144924204	144924205	chr7:144924205:C:G	rs2699464	C	G	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr7	145019171	145019172	chr7:145019172:C:T	rs6464638	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr7	145122801	145122802	chr7:145122802:A:G	rs56069552	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr7	146224405	146224406	chr7:146224406:G:A	rs2693307	G	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr7	147245162	147245163	chr7:147245163:G:C	rs1390721	G	C	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr7	147427455	147427456	chr7:147427456:C:A	rs11773683	C	A	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr7	147861016	147861017	chr7:147861017:A:G	rs4726891	A	G	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr7	147861021	147861022	chr7:147861022:A:G	rs4726892	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr7	148187187	148187188	chr7:148187188:A:G	rs12703998	A	G	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr7	148226789	148226790	chr7:148226790:T:A	rs10238872	T	A	T	Sox3.mouse_HMG_1	12	1	+	2.0258437895460624	-3.562348284087049	GAACTATGCCAATGTAT
chr7	148395890	148395891	chr7:148395891:G:A	rs10242598	G	A	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr7	148983630	148983631	chr7:148983631:T:A	rs2616858	T	A	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr7	149422722	149422723	chr7:149422723:G:A	rs73164199	G	A	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr7	149933914	149933915	chr7:149933915:G:T	rs7791831	G	T	.	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr7	150412958	150412959	chr7:150412959:C:T	rs192589690	C	T	C	Sox3.mouse_HMG_1	8	1	-	1.3432852779629219	2.3696987529735587	GAGCAATGGTAGAGTCT
chr7	150439234	150439235	chr7:150439235:G:A	rs7777181	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr7	150739108	150739109	chr7:150739109:T:C	rs9657879	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr7	150791527	150791528	chr7:150791528:A:G	rs2302479	A	G	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr7	150802720	150802721	chr7:150802721:T:C	rs714886	T	C	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr7	150863233	150863234	chr7:150863234:A:G	rs11978239	A	G	A	Sox3.mouse_HMG_1	14	1	-	8.433263886011824	2.323372970763117	AAACAACACCATTGTAT
chr7	151017724	151017725	chr7:151017725:G:A	rs2373929	G	A	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr7	151458643	151458644	chr7:151458644:G:A	rs80148781	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr7	151516047	151516048	chr7:151516048:G:C	rs3815384	G	C	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr7	151709253	151709254	chr7:151709254:A:C	rs12672354	A	C	-	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr7	151873744	151873745	chr7:151873745:G:T	rs35697533	G	T	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr7	151931774	151931775	chr7:151931775:C:T	rs6948413	C	T	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr7	152146013	152146014	chr7:152146014:C:T	rs6954362	C	T	C	Sox3.mouse_HMG_1	0	1	+	4.3853938427577654	3.95183102979372	CACCAATGATATTTTTA
chr7	152341163	152341164	chr7:152341164:T:C	rs34782657	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr7	152434475	152434476	chr7:152434476:T:C	chr7:152434476:T:C	T	C	T	Sox3.mouse_HMG_1	10	1	-	5.266922077728946	-1.6413230812423933	TAGTAATAGTATTGTTG
chr7	152576385	152576386	chr7:152576386:A:C	rs4480029	A	C	C	Sox3.mouse_HMG_1	5	1	+	4.864427650726591	-1.9487172035654954	AAACAACGCAATTCTTT
chr7	152971136	152971137	chr7:152971137:T:C	rs10282370	T	C	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr7	152990413	152990414	chr7:152990414:A:G	rs56879124	A	G	A	Sox3.mouse_HMG_1	14	1	-	1.881826114857481	-4.228064800391226	TAGCAAGTGAATTGTTG
chr7	153297086	153297087	chr7:153297087:T:C	rs1722932	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr7	153542143	153542144	chr7:153542144:C:T	rs4389845	C	T	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr7	154216077	154216078	chr7:154216078:C:T	rs191523419	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr7	154454353	154454354	chr7:154454354:A:G	rs74984571	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr7	154522438	154522439	chr7:154522439:T:C	rs6976924	T	C	T	Sox3.mouse_HMG_1	1	1	-	1.871686623408786	-2.4557467199939063	GAACATTAGAATTGCTG
chr7	154597675	154597676	chr7:154597676:G:A	rs10263481	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr7	154597676	154597677	chr7:154597677:C:T	rs10237169	C	T	T	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr7	154639469	154639470	chr7:154639470:A:G	rs1979601	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.0601153463334816	-3.6660181309689728	GAACAATAGAATTTGTT
chr7	154778139	154778140	chr7:154778140:G:A	rs34259212	G	A	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr7	154877294	154877295	chr7:154877295:C:G	rs10274105	C	G	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr7	154879986	154879987	chr7:154879987:C:G	rs3807293	C	G	C	Sox3.mouse_HMG_1	15	1	+	1.3479651097665508	1.084048049955999	GGACAGTGACAGTGTCT
chr7	154953350	154953351	chr7:154953351:A:C	rs6960009	A	C	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr7	155162057	155162058	chr7:155162058:A:G	rs1621963	A	G	N	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr7	155186045	155186046	chr7:155186046:T:C	rs7783824	T	C	N	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr7	155300514	155300515	chr7:155300515:C:G	rs11980659	C	G	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr7	155356959	155356960	chr7:155356960:G:C	rs144727854	G	C	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr7	155580430	155580431	chr7:155580431:T:C	rs10274485	T	C	T	Sox3.mouse_HMG_1	9	1	-	5.273217111358164	0.6902174916368325	GAGCAATGCACTTGTTT
chr7	155888825	155888826	chr7:155888826:G:C	rs12698334	G	C	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr7	156099320	156099321	chr7:156099321:C:A	rs192725144	C	A	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr7	156324419	156324420	chr7:156324420:T:C	rs4424129	T	C	C	Sox3.mouse_HMG_1	16	1	-	1.4160400342936736	1.8498714790147808	AAACAACCTCATTGTCA
chr7	157203533	157203534	chr7:157203534:T:C	rs3802115	T	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr7	157267133	157267134	chr7:157267134:C:A	rs4262225	C	A	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr7	157455194	157455195	chr7:157455195:T:C	rs6977042	T	C	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr7	157507977	157507978	chr7:157507978:T:G	rs1894811	T	G	T	Sox3.mouse_HMG_1	6	1	-	3.8639517391765343	4.126316003644025	GAACAAAAAAATTGCTT
chr7	158025425	158025426	chr7:158025426:C:T	rs73169792	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr7	158180058	158180059	chr7:158180059:A:G	rs6979649	A	G	A	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr7	158267755	158267756	chr7:158267756:A:G	rs76360100	A	G	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr7	158320697	158320698	chr7:158320698:T:G	rs896779	T	G	T	Sox3.mouse_HMG_1	4	1	-	3.7411474405106864	-2.9841662744769217	GATGAATATCATTGTTG
chr7	158638214	158638215	chr7:158638215:C:T	rs877279	C	T	c	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr7	158696071	158696072	chr7:158696072:A:G	rs11761779	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr7	158736571	158736572	chr7:158736572:G:A	rs6960146	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr7	158739362	158739363	chr7:158739363:T:C	rs7804548	T	C	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr7	158830536	158830537	chr7:158830537:A:G	rs28498939	A	G	A	Sox3.mouse_HMG_1	14	1	-	2.4308220934708884	-3.679068821777819	GATCAATAGTTGTGTTT
chr7	159047688	159047689	chr7:159047689:G:A	rs2730261	G	A	G	Sox3.mouse_HMG_1	6	1	-	3.965556215084098	10.61164698471302	TAACAACAACATTCTTG
chr7	159100501	159100502	chr7:159100502:T:C	rs72621132	T	C	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr7	159142149	159142150	chr7:159142150:G:A	rs4345505	G	A	G	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr7	159193388	159193389	chr7:159193389:G:T	rs396061	G	T	T	Sox3.mouse_HMG_1	16	1	-	3.3342484488248325	5.536362028967595	AAATAATGTTAGTGTCC
chr7	159193417	159193418	chr7:159193418:G:A	rs396091	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr8	339568	339569	chr8:339569:T:G	rs78661643	T	G	.	Sox3.mouse_HMG_1	12	1	+	10.50503751794559	3.936909447277967	AAACAATAACAGTGCTG
chr8	343367	343368	chr8:343368:A:T	rs6983362	A	T	.	Sox3.mouse_HMG_1	10	1	+	4.501064679929597	-2.3118702992374156	GAACAATGACATTGGCC
chr8	385485	385486	chr8:385486:T:A	rs1550949	T	A	.	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr8	615515	615516	chr8:615516:G:A	rs145066056	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr8	654938	654939	chr8:654939:C:G	rs1025571553	C	G	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr8	805539	805540	chr8:805540:C:G	rs74514726	C	G	C	Sox3.mouse_HMG_1	6	1	-	0.6660037121371898	0.9283679766046802	ACACAAGGGCATTGTGA
chr8	1032866	1032867	chr8:1032867:T:A	rs2600502	T	A	T	Sox3.mouse_HMG_1	4	1	-	1.4089632595387838	-4.905345166965043	GAACAATTCTTTTGTCC
chr8	1052062	1052063	chr8:1052063:C:A	rs117467332	C	A	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr8	1166917	1166918	chr8:1166918:G:T	rs10086026	G	T	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr8	1210340	1210341	chr8:1210341:A:G	rs73540177	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr8	1223537	1223538	chr8:1223538:T:C	chr8:1223538:T:C	T	C	T	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr8	1438448	1438449	chr8:1438449:T:A	rs6996408	T	A	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr8	1502806	1502807	chr8:1502807:A:G	rs6997216	A	G	A	Sox3.mouse_HMG_1	16	1	+	2.0844107111919383	2.5182421559130455	GGACAATGTTAATGTCA
chr8	1702204	1702205	chr8:1702205:G:C	rs2957052	G	C	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr8	1743293	1743294	chr8:1743294:G:T	rs11136421	G	T	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr8	1892393	1892394	chr8:1892394:T:C	rs11774726	T	C	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr8	2056966	2056967	chr8:2056967:G:C	rs1542065	G	C	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr8	2091767	2091768	chr8:2091768:A:G	rs1550454	A	G	A	Sox3.mouse_HMG_1	2	1	+	2.0750218019870172	-2.332913176993443	GAAAAATGACAGTGTCC
chr8	2107111	2107112	chr8:2107112:T:C	rs1542066	T	C	T	Sox3.mouse_HMG_1	9	1	+	4.3259152862459365	4.361621411130506	AAACAATAGTTTTCTTA
chr8	2242438	2242439	chr8:2242439:A:C	rs200120688	A	C	a	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr8	2630325	2630326	chr8:2630326:A:G	rs3935443	A	G	A	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr8	2803532	2803533	chr8:2803533:A:G	rs7830827	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr8	2919562	2919563	chr8:2919563:C:A	rs189499756	C	A	c	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr8	2947207	2947208	chr8:2947208:C:T	rs341722	C	T	T	Sox3.mouse_HMG_1	12	1	-	3.5327393163821066	4.512675313416618	CAACAATAAACTGGTTT
chr8	2989934	2989935	chr8:2989935:G:A	rs627327	G	A	g	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr8	3192499	3192500	chr8:3192500:C:T	rs6558727	C	T	N	Sox3.mouse_HMG_1	1	1	-	3.3757786411006148	7.703211984503309	TGACAATTACTGTGTTT
chr8	3193592	3193593	chr8:3193593:T:G	rs17079571	T	G	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr8	3247373	3247374	chr8:3247374:C:G	rs35729878	C	G	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr8	3358762	3358763	chr8:3358763:C:T	rs9774400	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr8	3386810	3386811	chr8:3386811:C:G	rs7000196	C	G	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr8	3646672	3646673	chr8:3646673:A:G	rs112523280	A	G	A	Sox3.mouse_HMG_1	6	1	-	8.416688112737514	1.7705973431085988	AAACAATGCAAGTCTTG
chr8	3646697	3646698	chr8:3646698:C:T	rs186981033	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr8	4062681	4062682	chr8:4062682:C:G	rs6991762	C	G	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr8	4075961	4075962	chr8:4075962:G:A	rs76954441	G	A	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr8	4117317	4117318	chr8:4117318:A:G	rs5016258	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr8	4445956	4445957	chr8:4445957:G:C	rs1154066	G	C	g	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr8	4453578	4453579	chr8:4453579:T:A	rs77354697	T	A	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr8	5066406	5066407	chr8:5066407:T:C	rs17072191	T	C	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr8	5144473	5144474	chr8:5144474:C:T	rs4875449	C	T	T	Sox3.mouse_HMG_1	7	1	-	6.581159731406304	6.085089411628994	AAACAATGATCCTGTTG
chr8	5226502	5226503	chr8:5226503:C:T	rs62489595	C	T	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr8	5455977	5455978	chr8:5455978:G:T	rs7827464	G	T	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr8	5725736	5725737	chr8:5725737:C:T	rs538973570	C	T	-	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr8	6187309	6187310	chr8:6187310:G:A	rs2570650	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr8	6250929	6250930	chr8:6250930:C:T	rs117552560	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr8	6313802	6313803	chr8:6313803:A:C	rs6999296	A	C	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr8	6423869	6423870	chr8:6423870:C:T	rs2515538	C	T	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr8	6464112	6464113	chr8:6464113:T:A	rs145968388	T	A	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr8	6587428	6587429	chr8:6587429:A:G	rs7003723	A	G	a	Sox3.mouse_HMG_1	5	1	-	3.1110444357849887	3.2063546155893143	ACACATTGAAAGTGTTG
chr8	6589334	6589335	chr8:6589335:G:A	rs73509269	G	A	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr8	6707170	6707171	chr8:6707171:T:C	rs1425784	T	C	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr8	6869091	6869092	chr8:6869092:T:G	rs2951825	T	G	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr8	6919528	6919529	chr8:6919529:A:G	rs2741694	A	G	A	Sox3.mouse_HMG_1	6	1	-	1.6709104730373678	-4.975180296591548	AAACAATGACAGAGAGG
chr8	6961721	6961722	chr8:6961722:T:C	rs62488525	T	C	.	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr8	7032554	7032555	chr8:7032555:T:C	rs34825638	T	C	.	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr8	7253809	7253810	chr8:7253810:C:T	rs370010535	C	T	.	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr8	7253840	7253841	chr8:7253841:T:A	rs62488770	T	A	.	Sox3.mouse_HMG_1	12	1	+	4.712642684952356	-0.8755493886807563	CAGCAAAGCAATTGTTT
chr8	7547472	7547473	chr8:7547473:G:A	rs62639834	G	A	.	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr8	7547493	7547494	chr8:7547494:A:C	rs78324875	A	C	.	Sox3.mouse_HMG_1	12	1	-	4.712642684952356	-1.8554853857152676	CAGCAAAGCAATTGTTT
chr8	7765885	7765886	chr8:7765886:G:C	rs774409518	G	C	.	Sox3.mouse_HMG_1	7	1	+	4.712642684952356	-0.9080494499724175	CAGCAAAGCAATTGTTT
chr8	8333622	8333623	chr8:8333623:G:A	rs28607078	G	A	G	Sox3.mouse_HMG_1	15	1	-	4.837996628393888	9.140498426189373	GAACAATGAAAGTGCCT
chr8	8364963	8364964	chr8:8364964:T:C	rs2030279	T	C	C	Sox3.mouse_HMG_1	5	1	-	7.540227841868608	0.8140943645661528	AAACAAGGAAATTGTCT
chr8	8412783	8412784	chr8:8412784:T:G	rs6601697	T	G	G	Sox3.mouse_HMG_1	14	1	+	7.749737381812626	1.323088130030628	CAACATTTAAATTGTTG
chr8	8451497	8451498	chr8:8451498:T:C	rs2979162	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr8	8451503	8451504	chr8:8451504:A:G	rs2976866	A	G	A	Sox3.mouse_HMG_1	2	1	+	7.277730796496813	2.8697958175163527	AAAGAATGAAATTGTGT
chr8	8662540	8662541	chr8:8662541:T:C	rs7813831	T	C	C	Sox3.mouse_HMG_1	14	1	+	5.356099175960764	-0.7537917392879433	AAGCAATGATGTTGTAT
chr8	8797010	8797011	chr8:8797011:A:C	rs113160067	A	C	-	Sox3.mouse_HMG_1	10	1	-	1.7516942730122693	1.6563840932079446	GAACATTTTTTTTGTTG
chr8	8797016	8797017	chr8:8797017:T:C	rs4841040	T	C	-	Sox3.mouse_HMG_1	4	1	-	1.7516942730122693	-5.060630818964968	GAACATTTTTTTTGTTG
chr8	8797030	8797031	chr8:8797031:C:G	rs4841041	C	G	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr8	9081862	9081863	chr8:9081863:T:C	rs2979245	T	C	C	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr8	9237662	9237663	chr8:9237663:A:T	rs922706	A	T	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr8	9305768	9305769	chr8:9305769:A:G	rs57128627	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.282646872833338	-3.363443896795581	AAACAATTTTTGAGTTT
chr8	9350488	9350489	chr8:9350489:C:T	rs78210623	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr8	9382887	9382888	chr8:9382888:C:G	rs118065175	C	G	-	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr8	9873959	9873960	chr8:9873960:T:C	rs13268133	T	C	T	Sox3.mouse_HMG_1	11	1	+	5.271062364662265	-0.7863937442980862	AAGCAACGGAATTGTTA
chr8	10217862	10217863	chr8:10217863:C:T	rs12548393	C	T	c	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr8	10314626	10314627	chr8:10314627:A:C	rs11249986	A	C	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr8	10777786	10777787	chr8:10777787:T:C	rs2116095	T	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr8	11005253	11005254	chr8:11005254:A:G	rs7838833	A	G	G	Sox3.mouse_HMG_1	8	1	-	2.9061873958536513	2.5934481709431094	AAACAATATATGAGTTT
chr8	11060049	11060050	chr8:11060050:C:T	rs11781155	C	T	T	Sox3.mouse_HMG_1	3	1	-	3.3099473035880767	3.4922688603820307	AAAGAATGGAATTATTA
chr8	11280310	11280311	chr8:11280311:C:T	rs2572419	C	T	T	Sox3.mouse_HMG_1	16	1	-	16.684046649854363	16.25021520513326	TAACAATAATATTGTTG
chr8	11642662	11642663	chr8:11642663:A:C	rs571505699	A	C	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr8	11692274	11692275	chr8:11692275:T:C	rs73537803	T	C	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr8	11738459	11738460	chr8:11738460:G:A	rs2898295	G	A	G	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr8	11754871	11754872	chr8:11754872:T:C	rs13273672	T	C	C	Sox3.mouse_HMG_1	10	1	-	3.863830055637851	-3.0444151033334883	AATCAATTCCATTTTTA
chr8	11791279	11791280	chr8:11791280:G:A	rs2740444	G	A	G	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr8	11807707	11807708	chr8:11807708:G:A	rs1736057	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr8	11850020	11850021	chr8:11850021:A:G	rs62495696	A	G	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr8	11893139	11893140	chr8:11893140:T:C	rs11984506	T	C	T	Sox3.mouse_HMG_1	9	1	+	2.278642063897548	2.314348188782116	CGACAATTATGGTGTTA
chr8	12028517	12028518	chr8:12028518:A:G	rs13278012	A	G	.	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr8	12586770	12586771	chr8:12586771:C:T	rs548535758	C	T	.	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr8	12771868	12771869	chr8:12771869:C:T	rs35649296	C	T	C	Sox3.mouse_HMG_1	7	1	-	8.575368398791209	8.079298079013899	ATACAATGAAATTGATT
chr8	12872731	12872732	chr8:12872732:A:T	rs2956736	A	T	T	Sox3.mouse_HMG_1	5	1	+	3.8068568052535268	-3.1015982288428816	AAAAAATGATAGTGCTA
chr8	12872737	12872738	chr8:12872738:G:A	rs34110297	G	A	G	Sox3.mouse_HMG_1	11	1	+	3.8068568052535268	0.07237937820777973	AAAAAATGATAGTGCTA
chr8	12976852	12976853	chr8:12976853:C:G	rs2466254	C	G	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr8	12976855	12976856	chr8:12976856:A:G	rs75021555	A	G	A	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr8	12976899	12976900	chr8:12976900:T:C	rs12541930	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr8	13253886	13253887	chr8:13253887:T:C	rs1305584172	T	C	T	Sox3.mouse_HMG_1	14	1	+	3.3200101869610634	-2.7898807282876437	TAACAAAAACACTGTTA
chr8	13275024	13275025	chr8:13275025:C:G	rs1188282	C	G	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr8	13368587	13368588	chr8:13368588:G:A	rs183789710	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr8	13437620	13437621	chr8:13437621:A:G	rs564984671	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr8	13571628	13571629	chr8:13571629:C:T	rs11775957	C	T	T	Sox3.mouse_HMG_1	0	1	-	1.8055954356620805	3.17841210112362	GAGCAATGCAAGTGTCC
chr8	13596546	13596547	chr8:13596547:C:T	rs66965169	C	T	C	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr8	13601386	13601387	chr8:13601387:T:A	rs28379779	T	A	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr8	13640501	13640502	chr8:13640502:C:T	rs7014659	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr8	13640533	13640534	chr8:13640534:G:A	rs28565094	G	A	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr8	13662595	13662596	chr8:13662596:A:G	rs17116999	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr8	13673524	13673525	chr8:13673525:C:T	rs1481582	C	T	-	Sox3.mouse_HMG_1	3	1	+	2.8207139378762447	-3.1620621802580775	AAACAATCAATTTGTAT
chr8	13957700	13957701	chr8:13957701:C:G	rs62493475	C	G	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr8	15027039	15027040	chr8:15027040:C:T	rs4631467	C	T	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr8	15257476	15257477	chr8:15257477:T:G	rs7006031	T	G	t	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr8	15854248	15854249	chr8:15854249:A:T	rs2720641	A	T	A	Sox3.mouse_HMG_1	5	1	+	0.3993510328042239	-6.5091040012921875	CAGCAATGCCTATGTTT
chr8	15920497	15920498	chr8:15920498:A:G	rs12549082	A	G	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr8	16587215	16587216	chr8:16587216:A:G	rs10503583	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr8	16716642	16716643	chr8:16716643:C:T	rs11992805	C	T	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr8	16909663	16909664	chr8:16909664:G:T	rs13269520	G	T	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr8	17024394	17024395	chr8:17024395:C:G	rs79432701	C	G	C	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr8	17105852	17105853	chr8:17105853:A:T	rs1851712	A	T	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr8	17406315	17406316	chr8:17406316:A:G	rs78739229	A	G	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr8	17577830	17577831	chr8:17577831:C:T	rs35784756	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr8	17577831	17577832	chr8:17577832:C:T	rs140993366	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr8	17596964	17596965	chr8:17596965:T:A	rs2246480	T	A	T	Sox3.mouse_HMG_1	12	1	+	0.6885053386230915	-4.899686735010019	GGGCTATGACAGTGTTG
chr8	17596964	17596965	chr8:17596965:T:C	chr8:17596965:T:C	T	C	T	Sox3.mouse_HMG_1	12	1	+	0.6885053386230915	-5.51796024659476	GGGCTATGACAGTGTTG
chr8	17649002	17649003	chr8:17649003:G:A	rs188124949	G	A	G	Sox3.mouse_HMG_1	3	1	-	3.0700793298525904	-2.912696788281731	GAACGATGTTAGTGTGA
chr8	17662257	17662258	chr8:17662258:G:C	rs59224680	G	C	G	Sox3.mouse_HMG_1	3	1	-	3.908653265674072	-2.9983817539835784	AAACAATTTTATGTTTG
chr8	17662272	17662273	chr8:17662273:C:G	rs61327899	C	G	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr8	17684433	17684434	chr8:17684434:T:G	rs61748836	T	G	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr8	17684447	17684448	chr8:17684448:C:T	rs74754090	C	T	C	Sox3.mouse_HMG_1	0	1	+	2.1339848470667353	1.7004220341026905	CGTCAATTCAAGTGTTT
chr8	17802929	17802930	chr8:17802930:T:C	rs112617450	T	C	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr8	17864666	17864667	chr8:17864667:C:T	rs1386912833	C	T	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr8	17925358	17925359	chr8:17925359:G:A	rs3853532	G	A	G	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr8	18053267	18053268	chr8:18053268:G:T	rs10112108	G	T	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr8	18085154	18085155	chr8:18085155:G:C	rs1557600	G	C	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr8	18088308	18088309	chr8:18088309:A:G	rs11203935	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr8	18306728	18306729	chr8:18306729:T:C	rs58057772	T	C	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr8	18602077	18602078	chr8:18602078:G:C	rs4921941	G	C	G	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr8	18602096	18602097	chr8:18602097:T:C	rs2717736	T	C	T	Sox3.mouse_HMG_1	10	1	-	2.092976168640295	-4.815268990331044	AAACAAAAATATTTTCT
chr8	18676747	18676748	chr8:18676748:T:A	rs11774964	T	A	T	Sox3.mouse_HMG_1	6	1	+	1.8149786157509116	-5.093476418345499	TAACAATATCTGTGCTT
chr8	18676774	18676775	chr8:18676775:A:C	rs10087403	A	C	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr8	18768774	18768775	chr8:18768775:T:C	rs13264337	T	C	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr8	18808365	18808366	chr8:18808366:C:G	rs12549141	C	G	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr8	18943703	18943704	chr8:18943704:C:T	rs11780576	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr8	19132971	19132972	chr8:19132972:C:T	rs28530764	C	T	T	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr8	19199657	19199658	chr8:19199658:T:C	rs9657496	T	C	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr8	19560516	19560517	chr8:19560517:C:T	rs6996732	C	T	T	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr8	19560549	19560550	chr8:19560550:C:G	rs188889712	C	G	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr8	19584296	19584297	chr8:19584297:C:T	rs115989737	C	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr8	19639232	19639233	chr8:19639233:C:T	rs77472437	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr8	19728626	19728627	chr8:19728627:C:G	rs117009166	C	G	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr8	19796616	19796617	chr8:19796617:G:A	rs6995945	G	A	A	Sox3.mouse_HMG_1	8	1	+	1.7603607307756601	2.786774205786295	CAATAAATGCATTGTTA
chr8	19898465	19898466	chr8:19898466:G:T	rs12543154	G	T	G	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr8	20091464	20091465	chr8:20091465:C:A	rs183237593	C	A	C	Sox3.mouse_HMG_1	8	1	+	1.0694721256067619	2.202032588985838	GGACAATGCTCTTGTCA
chr8	20187540	20187541	chr8:20187541:T:C	rs67424528	T	C	T	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr8	20192216	20192217	chr8:20192217:G:T	rs71510685	G	T	G	Sox3.mouse_HMG_1	13	1	+	6.6925398309410005	0.32342021554546585	AAACAAGGATATGGTTT
chr8	20192239	20192240	chr8:20192240:A:G	rs1018571294	A	G	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr8	20251851	20251852	chr8:20251852:G:A	rs2645384	G	A	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr8	20428292	20428293	chr8:20428293:C:A	rs2410650	C	A	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr8	20916977	20916978	chr8:20916978:G:C	rs6988989	G	C	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr8	21042578	21042579	chr8:21042579:G:A	rs7014506	G	A	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr8	21101244	21101245	chr8:21101245:T:C	rs10111769	T	C	c	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr8	21511967	21511968	chr8:21511968:A:G	rs28496496	A	G	A	Sox3.mouse_HMG_1	6	1	-	2.223921136226596	-4.422169633402324	AAGCAATTCTCTTGTCT
chr8	21558075	21558076	chr8:21558076:A:G	rs966113	A	G	G	Sox3.mouse_HMG_1	12	1	-	4.851981867344227	-1.3544837178736242	GAACAGTTTCATTGTAA
chr8	21935046	21935047	chr8:21935047:G:A	rs188970436	G	A	G	Sox3.mouse_HMG_1	1	1	+	1.5353178160836989	5.86275115948639	GGACATTTGCATTGTAT
chr8	21948501	21948502	chr8:21948502:T:A	rs182544764	T	A	T	Sox3.mouse_HMG_1	0	1	-	8.146238754238647	6.123084428922402	AGGCAATTTCATTGTTG
chr8	21968909	21968910	chr8:21968910:C:T	rs6557712	C	T	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr8	22109837	22109838	chr8:22109838:G:A	rs7831322	G	A	g	Sox3.mouse_HMG_1	0	1	-	4.180889904869138	3.7473270919050923	CGGCAATGCCATTGTGT
chr8	22411177	22411178	chr8:22411178:C:G	rs7814612	C	G	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr8	22551058	22551059	chr8:22551059:G:A	rs76965906	G	A	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr8	22551101	22551102	chr8:22551102:C:G	rs74444464	C	G	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr8	22767680	22767681	chr8:22767681:G:C	rs150173495	G	C	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr8	22903172	22903173	chr8:22903173:C:T	rs12545333	C	T	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr8	22987467	22987468	chr8:22987468:C:T	rs2251588	C	T	C	Sox3.mouse_HMG_1	13	1	-	1.7803563834466938	-4.327749406579223	AAACAACACAAGGGTTT
chr8	22987499	22987500	chr8:22987500:G:C	rs2430804	G	C	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr8	23067740	23067741	chr8:23067741:A:G	rs571388484	A	G	A	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr8	23067741	23067742	chr8:23067742:T:G	rs143206963	T	G	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr8	23286720	23286721	chr8:23286721:C:T	rs4872101	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr8	23352922	23352923	chr8:23352923:G:A	rs4872109	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr8	23750863	23750864	chr8:23750864:G:A	rs117431594	G	A	G	Sox3.mouse_HMG_1	13	1	-	4.95595379176922	4.694939966399601	GAACTATGAAATTCTTT
chr8	24078057	24078058	chr8:24078058:A:C	rs7845241	A	C	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr8	24251466	24251467	chr8:24251467:A:G	rs17051757	A	G	A	Sox3.mouse_HMG_1	10	1	+	2.7584187781558303	-4.149826380815508	CAGCAATAGTATAGTCT
chr8	24384390	24384391	chr8:24384391:T:C	rs12334642	T	C	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr8	24511742	24511743	chr8:24511743:A:G	rs79669679	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr8	24706899	24706900	chr8:24706900:G:A	rs17052420	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr8	24784598	24784599	chr8:24784599:C:T	rs2245382	C	T	c	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr8	24951553	24951554	chr8:24951554:C:T	rs2979704	C	T	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr8	25179976	25179977	chr8:25179977:G:A	rs2979823	G	A	A	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr8	25328784	25328785	chr8:25328785:C:T	rs2960173	C	T	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr8	25804592	25804593	chr8:25804593:T:C	rs76771493	T	C	T	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr8	25919919	25919920	chr8:25919920:C:T	rs11135903	C	T	T	Sox3.mouse_HMG_1	8	1	+	2.4106307880708737	2.7233700129814142	AAGCAATGCTATTACTT
chr8	25978409	25978410	chr8:25978410:G:C	rs7012877	G	C	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr8	26080660	26080661	chr8:26080661:C:T	rs4871965	C	T	C	Sox3.mouse_HMG_1	13	1	-	8.371820167455743	2.2637143774298267	AAACAATGACCTTGTCG
chr8	26110929	26110930	chr8:26110930:A:G	rs2976331	A	G	A	Sox3.mouse_HMG_1	1	1	+	9.444919513630675	5.117486170227982	GAAGAATGGAATTGTTT
chr8	26157758	26157759	chr8:26157759:A:C	rs80169010	A	C	A	Sox3.mouse_HMG_1	5	1	+	5.326295105593042	-1.4868497486990417	AAACAATTGCATCATTT
chr8	26584045	26584046	chr8:26584046:A:G	rs408753	A	G	G	Sox3.mouse_HMG_1	10	1	+	4.607782215353072	-2.3004629436182675	AAATAAGTCTATTGTTT
chr8	27126485	27126486	chr8:27126486:C:T	rs73237453	C	T	C	Sox3.mouse_HMG_1	3	1	+	6.081221040796892	0.09844492266257143	TAACATTACTAGTGTTA
chr8	27356662	27356663	chr8:27356663:A:G	rs114946623	A	G	A	Sox3.mouse_HMG_1	16	1	-	5.032161437876169	1.4303647722551873	GGACATTTGCATTGTTT
chr8	27386782	27386783	chr8:27386783:A:G	rs11776858	A	G	G	Sox3.mouse_HMG_1	4	1	+	7.0364894973675804	0.2241644053903435	AGACAATGGTTTTGTTG
chr8	27702660	27702661	chr8:27702661:C:T	rs138296532	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr8	27733743	27733744	chr8:27733744:G:C	rs8445	G	C	C	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr8	27786009	27786010	chr8:27786010:G:A	rs28754813	G	A	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr8	27966314	27966315	chr8:27966315:G:A	rs11780263	G	A	G	Sox3.mouse_HMG_1	6	1	+	3.791394215902738	3.791394215902738	TGACAAGGGCAGTGTTT
chr8	27974648	27974649	chr8:27974649:A:G	rs2727006	A	G	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr8	28001903	28001904	chr8:28001904:C:T	rs56858294	C	T	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr8	28341529	28341530	chr8:28341530:C:T	rs60950192	C	T	C	Sox3.mouse_HMG_1	9	1	+	1.529021068612582	1.4933149437280133	GAACGATGGCAATGTTC
chr8	28348535	28348536	chr8:28348536:T:A	rs182034550	T	A	T	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr8	28368499	28368500	chr8:28368500:G:A	rs17059034	G	A	g	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr8	29036719	29036720	chr8:29036720:C:T	rs6558089	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr8	29405610	29405611	chr8:29405611:C:T	rs74845733	C	T	C	Sox3.mouse_HMG_1	2	1	-	1.51265300354914	5.920587982529602	CAGCAATCACATTATTG
chr8	29445210	29445211	chr8:29445211:A:C	rs4732946	A	C	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr8	29555331	29555332	chr8:29555332:T:C	rs6998142	T	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr8	29608585	29608586	chr8:29608586:T:C	rs7839108	T	C	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr8	29685450	29685451	chr8:29685451:A:G	rs145340002	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr8	29723116	29723117	chr8:29723117:A:T	rs55698894	A	T	A	Sox3.mouse_HMG_1	6	1	-	4.283032854163847	-2.6254221799325617	GAACAATGGAAACGTTT
chr8	29778393	29778394	chr8:29778394:C:A	rs7813195	C	A	A	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr8	29975313	29975314	chr8:29975314:G:A	rs550664958	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr8	29975342	29975343	chr8:29975343:A:G	rs6985480	A	G	A	Sox3.mouse_HMG_1	10	1	+	2.2383453623510463	-4.6698997966202915	AAACATTTACAGTGGTG
chr8	29975346	29975347	chr8:29975347:G:A	rs10101135	G	A	G	Sox3.mouse_HMG_1	14	1	+	2.2383453623510463	3.379517265437952	AAACATTTACAGTGGTG
chr8	30058457	30058458	chr8:30058458:C:T	rs7846290	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr8	30267168	30267169	chr8:30267169:T:A	rs11989668	T	A	T	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr8	30317447	30317448	chr8:30317448:C:T	rs11996929	C	T	T	Sox3.mouse_HMG_1	9	1	+	4.985039570836877	4.949333445952307	TAACAATAACAGTGCAG
chr8	30317864	30317865	chr8:30317865:A:C	rs12674731	A	C	A	Sox3.mouse_HMG_1	8	1	+	2.5582576174163827	1.4256971540373073	GAGCTATAAAATTGTTC
chr8	30525277	30525278	chr8:30525278:A:G	rs16877121	A	G	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr8	30549447	30549448	chr8:30549448:A:G	rs974337804	A	G	A	Sox3.mouse_HMG_1	1	1	+	3.1351098771096195	-1.192323466293076	CATAAATGAAATTGTTA
chr8	30677045	30677046	chr8:30677046:A:G	rs62505346	A	G	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr8	30814288	30814289	chr8:30814289:T:C	rs6996100	T	C	T	Sox3.mouse_HMG_1	6	1	+	3.604247866925566	-3.0418429027033556	CCCCAATGTCAGTGTTT
chr8	31182304	31182305	chr8:31182305:G:A	rs142482292	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr8	31286255	31286256	chr8:31286256:G:A	rs78913979	G	A	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr8	31286266	31286267	chr8:31286267:G:T	rs7002808	G	T	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr8	31286281	31286282	chr8:31286282:A:G	rs6985426	A	G	A	Sox3.mouse_HMG_1	5	1	-	2.626783986016554	2.7220941658208786	GAACATTGTAACTGTTG
chr8	31463356	31463357	chr8:31463357:G:C	rs2033671	G	C	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr8	31952905	31952906	chr8:31952906:T:C	rs406422	T	C	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr8	32334750	32334751	chr8:32334751:G:C	rs73248796	G	C	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr8	32553174	32553175	chr8:32553175:C:T	rs12543882	C	T	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr8	32576166	32576167	chr8:32576167:A:C	rs2439299	A	C	A	Sox3.mouse_HMG_1	16	1	-	6.576398047687208	5.610546406930096	AAATAATTACATTATTT
chr8	32576195	32576196	chr8:32576196:T:G	rs73234169	T	G	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr8	32664607	32664608	chr8:32664608:A:T	rs2919394	A	T	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr8	32745267	32745268	chr8:32745268:G:A	rs78795113	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr8	32842824	32842825	chr8:32842825:T:C	rs10503931	T	C	C	Sox3.mouse_HMG_1	6	1	+	7.846909542493311	1.2008187728643924	CAACAATGCCAGTCTTA
chr8	32918616	32918617	chr8:32918617:T:G	rs151144861	T	G	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr8	33800499	33800500	chr8:33800500:G:A	rs4389890	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr8	33889643	33889644	chr8:33889644:C:T	rs7839171	C	T	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr8	33889648	33889649	chr8:33889649:G:T	rs7838219	G	T	T	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr8	34581349	34581350	chr8:34581350:C:T	rs883181	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr8	34666960	34666961	chr8:34666961:T:C	rs4455823	T	C	C	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr8	34666994	34666995	chr8:34666995:C:T	rs16882722	C	T	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr8	35587333	35587334	chr8:35587334:A:T	rs2579905	A	T	T	Sox3.mouse_HMG_1	10	1	+	2.414401165806985	-4.398533813360029	AATGAATGAAAGTGTTA
chr8	36171318	36171319	chr8:36171319:T:G	rs533710817	T	G	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr8	36981671	36981672	chr8:36981672:C:G	rs2970652	C	G	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr8	36981702	36981703	chr8:36981703:C:T	rs2970653	C	T	T	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr8	36994666	36994667	chr8:36994667:C:A	rs2970616	C	A	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr8	37333271	37333272	chr8:37333272:T:A	rs407793	T	A	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr8	37490915	37490916	chr8:37490916:T:C	rs79922418	T	C	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr8	37491086	37491087	chr8:37491087:G:A	rs73675815	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr8	38000509	38000510	chr8:38000510:G:A	rs72643034	G	A	G	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr8	38120213	38120214	chr8:38120214:T:G	rs2517388	T	G	G	Sox3.mouse_HMG_1	7	1	+	3.26948400689386	4.807033111636015	TAACAAGTATAGTGTCT
chr8	38376990	38376991	chr8:38376991:C:T	rs72630620	C	T	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr8	38435944	38435945	chr8:38435945:G:A	rs2411256	G	A	A	Sox3.mouse_HMG_1	3	1	-	1.5715189477014868	-4.411257170432838	GCACAAAGCAAGTGTTT
chr8	38435958	38435959	chr8:38435959:T:C	rs2411257	T	C	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr8	38541386	38541387	chr8:38541387:A:G	rs79359083	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr8	38718078	38718079	chr8:38718079:T:A	rs72634781	T	A	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr8	38840130	38840131	chr8:38840131:T:C	rs13262797	T	C	C	Sox3.mouse_HMG_1	16	1	+	1.9613915730971065	-1.6404050925238756	ATACATTGTCAGTGTAT
chr8	38903075	38903076	chr8:38903076:A:G	rs62503459	A	G	A	Sox3.mouse_HMG_1	12	1	-	7.140161459611376	0.9336958743935243	AAACAATTCATGTGTTT
chr8	38915708	38915709	chr8:38915709:C:A	rs62504363	C	A	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr8	38998245	38998246	chr8:38998246:G:A	rs75486227	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr8	38998262	38998263	chr8:38998263:G:C	rs73674683	G	C	G	Sox3.mouse_HMG_1	9	1	-	4.760382047530667	-1.276261959019764	AAACATTGTCAGAGTTT
chr8	39705070	39705071	chr8:39705071:T:C	rs7461443	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr8	39933796	39933797	chr8:39933797:C:T	rs10504013	C	T	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr8	39933826	39933827	chr8:39933827:A:C	rs56045817	A	C	C	Sox3.mouse_HMG_1	5	1	-	4.218137124224624	4.400458681018578	AAACATTTTTATTGATA
chr8	39993662	39993663	chr8:39993663:A:G	rs2543074	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr8	40199661	40199662	chr8:40199662:T:C	rs10093328	T	C	T	Sox3.mouse_HMG_1	10	1	-	4.534211772536462	-2.374033386434874	TAACAATTATATTATGA
chr8	40199685	40199686	chr8:40199686:A:T	rs10090307	A	T	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr8	40204973	40204974	chr8:40204974:G:A	rs6474237	G	A	G	Sox3.mouse_HMG_1	4	1	-	1.4846251773609151	1.8956304658446954	CAACCTTGACATTGTAT
chr8	40211733	40211734	chr8:40211734:A:G	rs2980801	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr8	40350019	40350020	chr8:40350020:G:A	rs77043538	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr8	40484168	40484169	chr8:40484169:G:A	rs944484944	G	A	G	Sox3.mouse_HMG_1	13	1	+	3.322012319786011	-2.786093470239905	CAAGAATTATTTTGTTT
chr8	40758469	40758470	chr8:40758470:G:A	rs4460355	G	A	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr8	41082233	41082234	chr8:41082234:G:A	rs80179235	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr8	41161863	41161864	chr8:41161864:T:C	rs113262729	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr8	41177127	41177128	chr8:41177128:T:G	rs62642283	T	G	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr8	41261977	41261978	chr8:41261978:T:C	rs4736958	T	C	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr8	42006098	42006099	chr8:42006099:A:G	rs117810811	A	G	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr8	42155820	42155821	chr8:42155821:T:C	rs59253046	T	C	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr8	42180222	42180223	chr8:42180223:G:A	rs185787026	G	A	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr8	42477407	42477408	chr8:42477408:G:A	rs10808961	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr8	43614603	43614604	chr8:43614604:G:A	rs9801848	G	A	-	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr8	44751234	44751235	chr8:44751235:T:C	rs1370217137	T	C	.	Sox3.mouse_HMG_1	2	1	-	5.0642056287745785	0.6562706497941176	CTACAATAAGAGTGTTT
chr8	46484390	46484391	chr8:46484391:A:T	rs7836208	A	T	.	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr8	47522620	47522621	chr8:47522621:A:G	rs915309560	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr8	47540232	47540233	chr8:47540233:G:A	rs62539108	G	A	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr8	48288440	48288441	chr8:48288441:C:T	rs71527698	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr8	48420938	48420939	chr8:48420939:G:C	rs72639017	G	C	G	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr8	48536700	48536701	chr8:48536701:G:T	rs563712542	G	T	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr8	48661617	48661618	chr8:48661618:A:G	rs13278011	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr8	50898363	50898364	chr8:50898364:G:A	rs7018008	G	A	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr8	51156747	51156748	chr8:51156748:A:T	rs10086704	A	T	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr8	51812117	51812118	chr8:51812118:T:C	rs7462096	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.546508477074325	-3.563382438174382	AAACAGAAACAGTGTTA
chr8	51869992	51869993	chr8:51869993:C:G	rs7011046	C	G	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr8	52099267	52099268	chr8:52099268:G:A	rs3843919	G	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr8	52108493	52108494	chr8:52108494:T:C	rs28582357	T	C	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr8	52230384	52230385	chr8:52230385:T:C	rs17221900	T	C	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr8	52254301	52254302	chr8:52254302:G:A	rs190498639	G	A	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr8	52754288	52754289	chr8:52754289:T:A	rs7820360	T	A	A	Sox3.mouse_HMG_1	5	1	-	4.670516971886178	-2.237938062210232	AAACAAAAATAGTGTGA
chr8	52954025	52954026	chr8:52954026:T:C	rs66726879	T	C	c	Sox3.mouse_HMG_1	1	1	-	1.7909187486279003	-2.536514594774792	CAACAATTCAAGTGCAG
chr8	52954044	52954045	chr8:52954045:T:C	rs112133624	T	C	c	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr8	53078338	53078339	chr8:53078339:C:T	rs13260897	C	T	C	Sox3.mouse_HMG_1	3	1	+	3.395860581674997	-2.586915536459325	CAACAATAGGAGTGTGG
chr8	53145880	53145881	chr8:53145881:T:C	rs2120559	T	C	T	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr8	53218775	53218776	chr8:53218776:A:T	rs118081261	A	T	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr8	53297325	53297326	chr8:53297326:T:C	rs7823007	T	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr8	53957392	53957393	chr8:53957393:G:C	rs28707072	G	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr8	54382306	54382307	chr8:54382307:T:A	rs6986393	T	A	A	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr8	54858454	54858455	chr8:54858455:C:T	rs9886656	C	T	-	Sox3.mouse_HMG_1	8	1	+	0.27084552614264074	0.5835847510531831	GAACATTGCCACTGTAG
chr8	54913835	54913836	chr8:54913836:T:C	rs903146	T	C	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr8	55203049	55203050	chr8:55203050:A:G	rs969882313	A	G	A	Sox3.mouse_HMG_1	1	1	+	2.077394549067382	-2.250038794335309	AAACAATTTCAGGCTTG
chr8	55411386	55411387	chr8:55411387:G:A	rs78831878	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr8	55631524	55631525	chr8:55631525:A:G	rs62517982	A	G	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr8	56861841	56861842	chr8:56861842:T:C	rs10087836	T	C	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr8	56861842	56861843	chr8:56861843:G:A	rs10097652	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr8	57061839	57061840	chr8:57061840:G:A	rs60074804	G	A	.	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr8	57305484	57305485	chr8:57305485:A:G	rs1878628	A	G	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr8	57668209	57668210	chr8:57668210:A:G	rs145177610	A	G	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr8	57705955	57705956	chr8:57705956:T:C	rs4738608	T	C	T	Sox3.mouse_HMG_1	15	1	+	4.753331971110533	0.4508301733150494	GAACAAGGGTATTCTTT
chr8	57705976	57705977	chr8:57705977:C:T	rs73680152	C	T	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr8	57714153	57714154	chr8:57714154:T:G	rs4400371	T	G	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr8	57890606	57890607	chr8:57890607:A:G	rs4738638	A	G	a	Sox3.mouse_HMG_1	0	1	-	3.4700209815778305	3.903583794541876	TGATAATGTAAGTGTTT
chr8	57900053	57900054	chr8:57900054:A:G	rs1390501459	A	G	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr8	57997247	57997248	chr8:57997248:C:T	rs144748563	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr8	58035770	58035771	chr8:58035771:T:C	rs11997733	T	C	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr8	58066245	58066246	chr8:58066246:T:C	rs10093645	T	C	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr8	58130927	58130928	chr8:58130928:G:A	rs17176439	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr8	58130929	58130930	chr8:58130930:G:A	rs116272300	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr8	58229159	58229160	chr8:58229160:T:A	rs737145	T	A	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr8	58245005	58245006	chr8:58245006:A:G	rs147617050	A	G	A	Sox3.mouse_HMG_1	15	1	-	4.016462765701461	-0.28603903209402254	CTACAATGGCAGAGTTG
chr8	58255389	58255390	chr8:58255390:C:A	rs62512271	C	A	C	Sox3.mouse_HMG_1	7	1	-	1.512949773210253	-0.024599331531901636	GAACAAGGACATTATCT
chr8	58480713	58480714	chr8:58480714:A:G	rs4738684	A	G	G	Sox3.mouse_HMG_1	10	1	+	1.844013192131254	-5.0642319668400875	AAAGAGTTGTAGTGTTT
chr8	58618908	58618909	chr8:58618909:C:T	rs7011033	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr8	58805423	58805424	chr8:58805424:T:C	rs62505114	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr8	58880218	58880219	chr8:58880219:C:T	rs2726556	C	T	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr8	58880240	58880241	chr8:58880241:A:G	rs2726557	A	G	G	Sox3.mouse_HMG_1	2	1	+	4.278396064377985	-0.12953891460247774	AGACAATGGCATTGCAG
chr8	59044118	59044119	chr8:59044119:C:A	rs188048680	C	A	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr8	59064873	59064874	chr8:59064874:A:C	rs394226	A	C	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr8	59108451	59108452	chr8:59108452:T:A	rs897535	T	A	A	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr8	59148060	59148061	chr8:59148061:A:G	rs16924675	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr8	59320705	59320706	chr8:59320706:T:C	rs58588385	T	C	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr8	59919129	59919130	chr8:59919130:A:G	rs184694274	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr8	60282066	60282067	chr8:60282067:G:A	rs12155603	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr8	60396638	60396639	chr8:60396639:A:G	rs10504312	A	G	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr8	60643865	60643866	chr8:60643866:T:G	rs7822621	T	G	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr8	60922749	60922750	chr8:60922750:G:A	rs150719045	G	A	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr8	60922749	60922750	chr8:60922750:G:C	chr8:60922750:G:C	G	C	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr8	61008166	61008167	chr8:61008167:A:G	rs4738851	A	G	G	Sox3.mouse_HMG_1	6	1	-	4.537781937259252	-2.1083088323696693	AAACAGTGACTGTGTTT
chr8	61008174	61008175	chr8:61008175:G:C	rs4738852	G	C	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr8	61561309	61561310	chr8:61561310:G:A	rs13253460	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr8	61825907	61825908	chr8:61825908:T:C	rs993792	T	C	T	Sox3.mouse_HMG_1	9	1	+	6.169506071423029	6.205212196307598	GATAAATGATATTGTTT
chr8	61957365	61957366	chr8:61957366:A:G	rs592754	A	G	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr8	62012004	62012005	chr8:62012005:A:T	rs12679959	A	T	A	Sox3.mouse_HMG_1	9	1	-	3.759024698734226	2.3410864367896953	GAACAAAATTTTTGTTT
chr8	62472645	62472646	chr8:62472646:G:T	rs34558126	G	T	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr8	62865793	62865794	chr8:62865794:A:G	rs7842329	A	G	.	Sox3.mouse_HMG_1	16	1	-	3.041273071967876	-0.5605235936531061	TAACATTTACAGTGTGT
chr8	63010312	63010313	chr8:63010313:T:A	rs10504362	T	A	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr8	63118932	63118933	chr8:63118933:C:T	rs28595528	C	T	T	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr8	63329566	63329567	chr8:63329567:C:T	rs114172683	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr8	63704466	63704467	chr8:63704467:C:T	rs553143108	C	T	A	Sox3.mouse_HMG_1	3	1	+	5.191493876000106	-0.7912822421342157	AAACATTGGAAGTGTAT
chr8	64168561	64168562	chr8:64168562:A:G	rs2356341	A	G	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr8	64477399	64477400	chr8:64477400:G:C	rs28703225	G	C	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr8	64630843	64630844	chr8:64630844:G:C	rs7008736	G	C	c	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr8	64806774	64806775	chr8:64806775:C:A	rs138850919	C	A	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr8	65189952	65189953	chr8:65189953:G:A	rs72658989	G	A	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr8	65743174	65743175	chr8:65743175:T:G	rs17304921	T	G	T	Sox3.mouse_HMG_1	2	1	-	5.5070236127460355	-0.9183112669752753	AAACAATGCCACTCTTA
chr8	66001407	66001408	chr8:66001408:T:C	rs7836993	T	C	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr8	66207191	66207192	chr8:66207192:T:C	rs140777913	T	C	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr8	66459598	66459599	chr8:66459599:T:A	rs890515	T	A	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr8	67995559	67995560	chr8:67995560:T:C	rs4737880	T	C	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr8	67995566	67995567	chr8:67995567:C:T	rs71515081	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr8	67995578	67995579	chr8:67995579:A:T	rs10957405	A	T	A	Sox3.mouse_HMG_1	14	1	-	3.8467922623772406	-1.4386850863178515	AAACAACTCAATAGTTT
chr8	68010034	68010035	chr8:68010035:G:A	rs13274293	G	A	g	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr8	68061567	68061568	chr8:68061568:T:C	rs6472378	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr8	68332718	68332719	chr8:68332719:T:A	rs73254835	T	A	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr8	68773770	68773771	chr8:68773771:C:G	rs7016534	C	G	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr8	68773800	68773801	chr8:68773801:G:A	rs11994264	G	A	G	Sox3.mouse_HMG_1	13	1	+	1.4262422605033493	-4.681863529522566	AACAAATGGTATTGTGT
chr8	68985135	68985136	chr8:68985136:G:A	rs17613697	G	A	G	Sox3.mouse_HMG_1	1	1	-	2.422644526416763	3.170160496403673	ACGCAATGCTATGGTTT
chr8	69034342	69034343	chr8:69034343:A:G	rs7350143	A	G	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr8	69267742	69267743	chr8:69267743:G:A	rs283323	G	A	G	Sox3.mouse_HMG_1	4	1	-	0.24186976149299622	0.6528750499767765	GAGCCATGGCAGTGTCT
chr8	69318897	69318898	chr8:69318898:G:A	rs10957480	G	A	G	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr8	69506885	69506886	chr8:69506886:A:G	rs1441198	A	G	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr8	69506898	69506899	chr8:69506899:C:G	rs1441197	C	G	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr8	69599950	69599951	chr8:69599951:A:T	rs7846303	A	T	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr8	69705926	69705927	chr8:69705927:T:C	rs918004551	T	C	T	Sox3.mouse_HMG_1	6	1	+	4.5586753257285775	-2.0874154439003427	AATCAATTCCATTCTTG
chr8	69713338	69713339	chr8:69713339:C:T	rs17729279	C	T	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr8	70025261	70025262	chr8:70025262:A:G	rs10103470	A	G	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr8	70194469	70194470	chr8:70194470:G:A	rs4512409	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr8	70220484	70220485	chr8:70220485:C:T	rs73289301	C	T	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr8	70404980	70404981	chr8:70404981:G:A	rs117301484	G	A	g	Sox3.mouse_HMG_1	9	1	+	7.216702723998289	11.799702343719618	AGACAATAAGAGTGTTT
chr8	70828007	70828008	chr8:70828008:G:T	rs17689052	G	T	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr8	70999882	70999883	chr8:70999883:A:G	rs2732146	A	G	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr8	71047079	71047080	chr8:71047080:T:C	rs77191980	T	C	T	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr8	71175935	71175936	chr8:71175936:A:G	rs737534	A	G	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr8	71176012	71176013	chr8:71176013:G:C	rs72652101	G	C	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr8	71245899	71245900	chr8:71245900:T:C	rs7839496	T	C	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr8	71245912	71245913	chr8:71245913:A:C	rs7821137	A	C	C	Sox3.mouse_HMG_1	5	1	+	4.239377009841336	-2.573767844450751	TAAAAATTCAAGTGTTG
chr8	71280614	71280615	chr8:71280615:C:T	rs116318425	C	T	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr8	71566515	71566516	chr8:71566516:G:A	rs1424866	G	A	A	Sox3.mouse_HMG_1	1	1	+	5.042032155726947	9.369465499129637	AGACTATTTTAGTGTTT
chr8	71623077	71623078	chr8:71623078:G:T	rs11775258	G	T	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr8	71656883	71656884	chr8:71656884:C:A	rs1424881	C	A	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr8	71656892	71656893	chr8:71656893:A:G	rs1424880	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr8	71834055	71834056	chr8:71834056:G:A	rs4078228	G	A	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr8	72108018	72108019	chr8:72108019:T:C	rs16938029	T	C	T	Sox3.mouse_HMG_1	5	1	-	7.750340265244041	1.0242067879415848	AAAAAATGACAGTGTTC
chr8	72613764	72613765	chr8:72613765:T:C	rs55847011	T	C	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr8	72651790	72651791	chr8:72651791:A:G	rs1440341	A	G	G	Sox3.mouse_HMG_1	14	1	+	4.636415758572306	3.4952438554854	ATACAATAACATTGAAA
chr8	73191058	73191059	chr8:73191059:G:C	rs11775029	G	C	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr8	73453413	73453414	chr8:73453414:T:C	rs17291123	T	C	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr8	73498714	73498715	chr8:73498715:A:G	rs7844571	A	G	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr8	73653035	73653036	chr8:73653036:A:T	rs10100489	A	T	T	Sox3.mouse_HMG_1	4	1	+	7.039937778927871	0.725629352424047	AAACAATAATATCGGTT
chr8	73653044	73653045	chr8:73653045:G:A	rs10100790	G	A	A	Sox3.mouse_HMG_1	13	1	+	7.039937778927871	0.931831988901955	AAACAATAATATCGGTT
chr8	73983840	73983841	chr8:73983841:A:G	rs16938752	A	G	A	Sox3.mouse_HMG_1	6	1	-	12.66744285693042	6.021352087301503	AAACAATGCTATTTTTT
chr8	74106149	74106150	chr8:74106150:A:G	rs17326309	A	G	a	Sox3.mouse_HMG_1	10	1	+	6.0888272206856175	-0.819417938285721	CAGCAATGCAATTGTGG
chr8	74369874	74369875	chr8:74369875:G:A	rs576507808	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr8	75668048	75668049	chr8:75668049:G:A	rs74451714	G	A	G	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr8	76230934	76230935	chr8:76230935:A:C	rs977101258	A	C	A	Sox3.mouse_HMG_1	9	1	+	3.729109316941335	5.1827537037704365	CAACAATAAAAATCTTG
chr8	76262581	76262582	chr8:76262582:A:G	rs115021606	A	G	A	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr8	76530212	76530213	chr8:76530213:C:T	rs577418164	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr8	76687133	76687134	chr8:76687134:T:C	rs76651026	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr8	78214673	78214674	chr8:78214674:A:G	rs1361491389	A	G	A	Sox3.mouse_HMG_1	15	1	+	2.3548323260319752	1.2852570902184113	AAATAAAAACATTGTAG
chr8	78646120	78646121	chr8:78646121:C:G	rs62517750	C	G	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr8	78724768	78724769	chr8:78724769:C:T	rs75527145	C	T	C	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr8	78986559	78986560	chr8:78986560:G:A	rs639261	G	A	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr8	79193665	79193666	chr8:79193666:T:C	rs72684091	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr8	79384068	79384069	chr8:79384069:G:T	rs56808068	G	T	G	Sox3.mouse_HMG_1	13	1	+	3.2814228969256494	-3.0876967184698856	GAACATTGCCATTGCTA
chr8	79434116	79434117	chr8:79434117:C:T	rs116806224	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr8	79453083	79453084	chr8:79453084:G:A	rs73264119	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr8	80085010	80085011	chr8:80085011:A:T	rs75541231	A	T	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr8	80698854	80698855	chr8:80698855:C:T	rs79708718	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr8	81022428	81022429	chr8:81022429:G:A	rs2127937	G	A	G	Sox3.mouse_HMG_1	2	1	+	2.040659318450951	6.448594297431413	AAGCAATGTCAATATTG
chr8	81079113	81079114	chr8:81079114:T:C	rs4515498	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr8	81080504	81080505	chr8:81080505:T:C	rs1257830473	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr8	81187268	81187269	chr8:81187269:T:C	rs115293527	T	C	T	Sox3.mouse_HMG_1	12	1	+	1.983486348546499	-4.222979236671352	GGGCAATAGCAGTGTAG
chr8	81253317	81253318	chr8:81253318:A:G	rs75985855	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr8	81273047	81273048	chr8:81273048:A:G	rs111944243	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr8	81573891	81573892	chr8:81573892:G:A	rs4520121	G	A	g	Sox3.mouse_HMG_1	13	1	+	2.639780332288705	-3.468325457737211	AAACAATCATATCGTCA
chr8	81745497	81745498	chr8:81745498:A:G	rs148698659	A	G	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr8	81809793	81809794	chr8:81809794:G:A	rs73289744	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr8	81815279	81815280	chr8:81815280:C:T	rs2635482	C	T	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr8	81815284	81815285	chr8:81815285:A:T	rs2600606	A	T	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr8	81825535	81825536	chr8:81825536:A:G	rs1463258	A	G	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr8	81890524	81890525	chr8:81890525:C:T	rs10106527	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr8	81913278	81913279	chr8:81913279:C:A	rs4610705	C	A	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr8	81913320	81913321	chr8:81913321:T:G	rs765755	T	G	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr8	81999879	81999880	chr8:81999880:T:G	rs4562270	T	G	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr8	82020645	82020646	chr8:82020646:T:C	rs10091992	T	C	C	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr8	82206962	82206963	chr8:82206963:T:C	rs74420700	T	C	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr8	83130205	83130206	chr8:83130206:A:G	rs1193103700	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr8	84626453	84626454	chr8:84626454:A:T	rs1488710	A	T	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr8	84637733	84637734	chr8:84637734:A:G	rs10094897	A	G	A	Sox3.mouse_HMG_1	4	1	+	0.6178603959968285	-6.194464695980408	CAACAATAGCTGGGTTG
chr8	84949007	84949008	chr8:84949008:G:C	rs9693371	G	C	c	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr8	84949054	84949055	chr8:84949055:A:T	rs12542468	A	T	a	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr8	85638246	85638247	chr8:85638247:A:G	rs7826539	A	G	A	Sox3.mouse_HMG_1	1	1	+	3.6918206069476533	-0.6356127364550385	GAACAATTACGGTGTGT
chr8	87248056	87248057	chr8:87248057:T:C	rs7462260	T	C	c	Sox3.mouse_HMG_1	4	1	-	7.604734446670012	0.7924093546927761	GAACAATTAAAGTCTTT
chr8	89001887	89001888	chr8:89001888:A:G	rs2464701	A	G	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr8	89290122	89290123	chr8:89290123:A:G	rs2068088	A	G	G	Sox3.mouse_HMG_1	4	1	+	6.633874183848802	-0.17845090812843378	AAAAAATAAAATTGTAA
chr8	89721042	89721043	chr8:89721043:T:C	rs35489404	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr8	89778754	89778755	chr8:89778755:G:A	rs76938743	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr8	89888326	89888327	chr8:89888327:C:G	rs188167788	C	G	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr8	90197556	90197557	chr8:90197557:C:T	rs4961178	C	T	T	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr8	91515406	91515407	chr8:91515407:C:A	rs138271622	C	A	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr8	91953155	91953156	chr8:91953156:G:T	rs889540429	G	T	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr8	91975524	91975525	chr8:91975525:T:C	rs2920464	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr8	92009858	92009859	chr8:92009859:T:C	rs7845969	T	C	C	Sox3.mouse_HMG_1	6	1	+	5.631731388586314	-1.0143593810426057	AAAGAATATAATTGTAA
chr8	92009866	92009867	chr8:92009867:T:A	rs7845971	T	A	A	Sox3.mouse_HMG_1	14	1	+	5.631731388586314	0.34625403989122217	AAAGAATATAATTGTAA
chr8	92091399	92091400	chr8:92091400:A:G	rs2339457	A	G	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr8	92476245	92476246	chr8:92476246:A:G	rs75202802	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr8	92479064	92479065	chr8:92479065:A:C	rs4734231	A	C	A	Sox3.mouse_HMG_1	14	1	-	4.093003817917868	-2.3336454338641293	TTTCAATGCTAGTGTTT
chr8	93020514	93020515	chr8:93020515:G:T	rs2339774	G	T	T	Sox3.mouse_HMG_1	3	1	-	1.4216165409948882	-5.3030969218688115	TCACAATGGCAGGGTTA
chr8	93068445	93068446	chr8:93068446:T:A	rs279469	T	A	T	Sox3.mouse_HMG_1	5	1	-	2.8744210649854116	-4.0340339691109985	AAAAAATTTTTTTGTTA
chr8	93116507	93116508	chr8:93116508:C:T	rs1483463	C	T	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr8	94227497	94227498	chr8:94227498:G:T	rs2448908	G	T	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr8	94227544	94227545	chr8:94227545:C:T	rs2607063	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr8	94311104	94311105	chr8:94311105:C:T	rs747790	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr8	94335668	94335669	chr8:94335669:T:C	rs2445701	T	C	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr8	94782962	94782963	chr8:94782963:G:A	rs11998371	G	A	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr8	94881361	94881362	chr8:94881362:A:G	rs28399587	A	G	A	Sox3.mouse_HMG_1	15	1	+	2.063135745769454	0.9935605099558901	AAACATTGCTATGGTAT
chr8	95520396	95520397	chr8:95520397:T:G	rs1500906	T	G	G	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr8	95758847	95758848	chr8:95758848:C:T	rs13253287	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr8	95758851	95758852	chr8:95758852:A:G	chr8:95758852:A:G	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr8	95893043	95893044	chr8:95893044:A:G	rs74720900	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr8	96104250	96104251	chr8:96104251:T:C	rs80264598	T	C	T	Sox3.mouse_HMG_1	11	1	+	4.183067512098024	-1.8743885968623297	GCATAATACCATTGTTA
chr8	96196431	96196432	chr8:96196432:C:T	rs2440215	C	T	t	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr8	96246490	96246491	chr8:96246491:C:T	rs1878638	C	T	T	Sox3.mouse_HMG_1	11	1	-	8.896349748773437	5.161872321727689	AAAGAATGTAAGTGTTT
chr8	96334761	96334762	chr8:96334762:T:A	rs34646355	T	A	T	Sox3.mouse_HMG_1	11	1	-	6.563586346758847	12.426042440665475	AAACAATGACTATGTTG
chr8	96407254	96407255	chr8:96407255:T:C	rs17710274	T	C	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr8	96523205	96523206	chr8:96523206:C:T	rs28437004	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr8	96523236	96523237	chr8:96523237:T:C	rs13259047	T	C	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr8	96575578	96575579	chr8:96575579:A:G	rs2589190	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.5536012827244434	-3.172532194578012	GAACAATTTCTTTCTTT
chr8	97119530	97119531	chr8:97119531:T:G	rs67964310	T	G	G	Sox3.mouse_HMG_1	8	1	-	6.081284555119715	4.9487240917406385	GATCAATGATTTTGTTT
chr8	97598100	97598101	chr8:97598101:C:A	rs185778610	C	A	c	Sox3.mouse_HMG_1	9	1	+	6.075590243852182	4.621945857023083	AAAAAAAAACATTGTTT
chr8	97951448	97951449	chr8:97951449:C:T	rs149406955	C	T	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr8	98358710	98358711	chr8:98358711:G:C	rs116914733	G	C	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr8	98455627	98455628	chr8:98455628:C:T	rs10955176	C	T	T	Sox3.mouse_HMG_1	11	1	-	3.3226068907612554	-0.41187053628449155	GAACAAAAGAAGTGTAT
chr8	98457011	98457012	chr8:98457012:A:G	chr8:98457012:A:G	A	G	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr8	98457042	98457043	chr8:98457043:G:C	rs1490299141	G	C	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr8	98631258	98631259	chr8:98631259:A:G	rs12550783	A	G	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr8	98631270	98631271	chr8:98631271:T:C	rs776651884	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.219446028320702	-4.506687448981755	AAACCATTGCAGGGTTT
chr8	99024814	99024815	chr8:99024815:C:A	rs78791374	C	A	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr8	99636939	99636940	chr8:99636940:C:T	rs74749458	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr8	99667671	99667672	chr8:99667672:A:G	rs1667638	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr8	99807547	99807548	chr8:99807548:C:A	rs1979115	C	A	A	Sox3.mouse_HMG_1	16	1	-	7.490984829858424	8.456836470615537	GAAAAATAGCAGTGTTG
chr8	99869693	99869694	chr8:99869694:C:G	rs138091634	C	G	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr8	100038795	100038796	chr8:100038796:C:A	rs930965	C	A	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr8	100324645	100324646	chr8:100324646:C:T	rs2439456	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr8	100333317	100333318	chr8:100333318:T:G	rs6468710	T	G	t	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr8	100472513	100472514	chr8:100472514:T:C	rs75604920	T	C	T	Sox3.mouse_HMG_1	11	1	+	1.2232132873871948	-4.834242821573158	GCACAAAAACATTGTGT
chr8	100777033	100777034	chr8:100777034:C:T	rs1874631	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr8	100827210	100827211	chr8:100827211:G:A	rs1353348528	G	A	G	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr8	101232125	101232126	chr8:101232126:G:A	rs60426890	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr8	101521782	101521783	chr8:101521783:A:G	rs529050	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr8	101602205	101602206	chr8:101602206:A:G	rs7821380	A	G	A	Sox3.mouse_HMG_1	9	1	-	3.435221321803151	3.470927446687719	AATCAATGATATTTTAG
chr8	101614270	101614271	chr8:101614271:T:A	rs2032119	T	A	T	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr8	101952521	101952522	chr8:101952522:A:C	rs16868791	A	C	A	Sox3.mouse_HMG_1	0	1	+	1.6303474147972037	0.04075590244500388	AATCATTTCCAGTGTTG
chr8	102128821	102128822	chr8:102128822:A:T	rs7822831	A	T	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr8	102238214	102238215	chr8:102238215:C:G	rs28999671	C	G	G	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr8	102523321	102523322	chr8:102523322:T:C	rs1469769	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr8	102590501	102590502	chr8:102590502:G:T	rs753754099	G	T	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr8	102653138	102653139	chr8:102653139:C:A	rs187659155	C	A	C	Sox3.mouse_HMG_1	8	1	+	4.911843810813476	6.044404274192551	AAAAAATTCTAATGTTT
chr8	102653667	102653668	chr8:102653668:T:C	rs190680917	T	C	T	Sox3.mouse_HMG_1	5	1	-	7.9336168402299965	1.2074833629275417	ATGCAATTATATTGTTA
chr8	102814743	102814744	chr8:102814744:A:G	rs73701529	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.1117607611758054	-3.5343300084531153	AAACAATTGCTGAGTTT
chr8	102850309	102850310	chr8:102850310:T:A	rs10104174	T	A	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr8	102900089	102900090	chr8:102900090:A:G	rs138031917	A	G	A	Sox3.mouse_HMG_1	3	1	-	3.880513365352398	9.863289483486719	ATATAATTTCAGTGTTG
chr8	102900108	102900109	chr8:102900109:G:A	rs78430053	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr8	102909566	102909567	chr8:102909567:T:C	rs6985891	T	C	t	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr8	103000435	103000436	chr8:103000436:G:A	rs596631	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr8	103269649	103269650	chr8:103269650:C:T	rs3133798	C	T	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr8	103574550	103574551	chr8:103574551:T:G	rs6985202	T	G	T	Sox3.mouse_HMG_1	4	1	-	1.896403266746229	-4.828910448241379	AGAGAATGACATTCTTG
chr8	103996528	103996529	chr8:103996529:T:C	rs7830448	T	C	C	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr8	104064768	104064769	chr8:104064769:C:A	rs72683185	C	A	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr8	104064784	104064785	chr8:104064785:A:G	rs11786807	A	G	G	Sox3.mouse_HMG_1	9	1	-	4.758531401858172	4.794237526742742	TTACAATGATAGTTTTT
chr8	104184204	104184205	chr8:104184205:A:G	rs6651195	A	G	A	Sox3.mouse_HMG_1	12	1	-	3.028025631945086	-3.1784399532727665	ATGTAATAACATTGTTA
chr8	104184301	104184302	chr8:104184302:G:A	rs2511641	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr8	104569055	104569056	chr8:104569056:A:G	rs10955352	A	G	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr8	104678937	104678938	chr8:104678938:A:G	rs193024976	A	G	A	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr8	104860361	104860362	chr8:104860362:T:G	rs72677050	T	G	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr8	105076950	105076951	chr8:105076951:A:T	rs3110293	A	T	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr8	105076973	105076974	chr8:105076974:T:C	rs2956785	T	C	T	Sox3.mouse_HMG_1	12	1	+	3.4757771099115837	-2.730688475306268	ACACAATGAAAGTGCTA
chr8	105464789	105464790	chr8:105464790:G:T	rs33916644	G	T	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr8	105615058	105615059	chr8:105615059:G:A	rs1037305	G	A	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr8	105659498	105659499	chr8:105659499:T:G	rs151151940	T	G	T	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr8	105775987	105775988	chr8:105775988:G:A	rs73306837	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr8	105848438	105848439	chr8:105848439:A:T	rs10112683	A	T	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr8	106012276	106012277	chr8:106012277:C:T	rs1496182	C	T	C	Sox3.mouse_HMG_1	13	1	-	2.3032372668079044	-3.804868523218011	TAGCAATATCATAGTGT
chr8	106208782	106208783	chr8:106208783:A:T	rs111406152	A	T	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr8	106518437	106518438	chr8:106518438:A:G	rs142261312	A	G	A	Sox3.mouse_HMG_1	12	1	-	6.3251947418819405	0.11872915666408884	TAACAATAAATGTGTTG
chr8	106624659	106624660	chr8:106624660:A:G	rs3134134	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr8	106763197	106763198	chr8:106763198:T:A	rs6991117	T	A	t	Sox3.mouse_HMG_1	15	1	-	8.59031889605918	12.08716251785165	AAACAATGTTAATGTAA
chr8	106903787	106903788	chr8:106903788:C:T	rs554547637	C	T	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr8	106973386	106973387	chr8:106973387:C:G	rs117327309	C	G	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr8	107253263	107253264	chr8:107253264:G:T	rs147143248	G	T	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr8	107497402	107497403	chr8:107497403:G:T	rs148142982	G	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr8	107741289	107741290	chr8:107741290:G:A	rs1003155322	G	A	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr8	107749343	107749344	chr8:107749344:T:C	rs11785773	T	C	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr8	108262841	108262842	chr8:108262842:G:A	rs60862542	G	A	G	Sox3.mouse_HMG_1	0	1	+	1.5876861511518194	2.9605028166133587	GAAAAATATCAGTGCTG
chr8	108513399	108513400	chr8:108513400:T:A	rs138071119	T	A	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr8	108770281	108770282	chr8:108770282:C:T	rs6469203	C	T	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr8	108942645	108942646	chr8:108942646:C:T	rs116911578	C	T	C	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr8	109252033	109252034	chr8:109252034:T:G	chr8:109252034:T:G	T	G	T	Sox3.mouse_HMG_1	14	1	-	6.385633764913436	5.56122019835982	GAACAATACCATTGAGG
chr8	109464545	109464546	chr8:109464546:C:A	rs181520404	C	A	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr8	110836031	110836032	chr8:110836032:A:G	rs62522391	A	G	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr8	111086641	111086642	chr8:111086642:A:T	chr8:111086642:A:T	A	T	A	Sox3.mouse_HMG_1	10	1	+	2.660205989554042	-4.152728989612972	TAACAACAACAGTGATG
chr8	111611619	111611620	chr8:111611620:G:C	rs35171173	G	C	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr8	112751086	112751087	chr8:112751087:T:A	rs186607134	T	A	T	Sox3.mouse_HMG_1	10	1	-	5.147117634053946	-1.6658173451130684	AAATAATTCTATTTTTT
chr8	112888137	112888138	chr8:112888138:T:C	rs2125553	T	C	C	Sox3.mouse_HMG_1	8	1	+	2.002604520481566	1.689865295571024	AAACAATGTCCTTGAGG
chr8	114111449	114111450	chr8:114111450:C:T	rs10112615	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr8	114230313	114230314	chr8:114230314:T:C	rs17632129	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.8459357340785236	-4.880197743223932	AAACAATGACGAAGTTT
chr8	114438919	114438920	chr8:114438920:C:T	rs77882049	C	T	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr8	114916868	114916869	chr8:114916869:A:G	rs16886637	A	G	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr8	115336174	115336175	chr8:115336175:A:G	rs7017904	A	G	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr8	115418535	115418536	chr8:115418536:T:C	rs77108422	T	C	T	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr8	115586971	115586972	chr8:115586972:T:G	rs2293889	T	G	T	Sox3.mouse_HMG_1	7	1	+	3.170661269885385	4.70821037462754	AAACAAATGAATTATTT
chr8	116307924	116307925	chr8:116307925:T:C	rs12548682	T	C	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr8	116353736	116353737	chr8:116353737:C:T	rs117156100	C	T	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr8	116353749	116353750	chr8:116353750:G:A	rs9650062	G	A	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr8	117060049	117060050	chr8:117060050:A:G	rs17745233	A	G	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr8	117707101	117707102	chr8:117707102:A:G	rs734650	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr8	117864958	117864959	chr8:117864959:T:A	rs4129116	T	A	T	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr8	117895641	117895642	chr8:117895642:G:A	rs7842122	G	A	G	Sox3.mouse_HMG_1	13	1	+	2.3229528419982217	-3.7851529480276946	AAATAATGAGAATGTTT
chr8	118164418	118164419	chr8:118164419:A:G	rs139923816	A	G	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr8	118373338	118373339	chr8:118373339:T:C	rs11786582	T	C	T	Sox3.mouse_HMG_1	5	1	-	3.9174421391921803	-2.808691338110276	GAGCAATAGACTTGTTG
chr8	118397033	118397034	chr8:118397034:C:T	rs7839584	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr8	118414718	118414719	chr8:118414719:C:T	rs4876830	C	T	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr8	118492421	118492422	chr8:118492422:G:T	rs147530357	G	T	G	Sox3.mouse_HMG_1	13	1	+	1.9140462763253177	-4.455073339070217	GTACAAATAAAGTGTTT
chr8	118521577	118521578	chr8:118521578:C:A	rs9297588	C	A	A	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr8	118650336	118650337	chr8:118650337:G:T	rs1543223	G	T	G	Sox3.mouse_HMG_1	13	1	+	1.0809783682481966	-5.288141247147339	AAACAATGCCAATGGCA
chr8	118866439	118866440	chr8:118866440:T:C	rs1493943	T	C	T	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr8	119355361	119355362	chr8:119355362:A:G	rs1903512	A	G	A	Sox3.mouse_HMG_1	4	1	+	5.63544724712138	-1.176877844855853	TACCAATAACAGTGTAT
chr8	119426168	119426169	chr8:119426169:C:T	rs60859300	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr8	119427251	119427252	chr8:119427252:C:T	rs17188373	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr8	119437870	119437871	chr8:119437871:T:C	rs72686306	T	C	T	Sox3.mouse_HMG_1	9	1	-	2.319178335255407	-2.2638212844659256	GAAGAATTGAATAGTTT
chr8	119976474	119976475	chr8:119976475:A:G	rs1914992	A	G	A	Sox3.mouse_HMG_1	4	1	+	2.4935967649937782	-4.318728326983458	GCACAATACTGGTGTTT
chr8	120030817	120030818	chr8:120030818:C:G	rs12542032	C	G	C	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr8	120048516	120048517	chr8:120048517:A:G	rs111273593	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr8	120161641	120161642	chr8:120161642:C:T	chr8:120161642:C:T	C	T	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr8	120175659	120175660	chr8:120175660:T:C	rs2198755	T	C	T	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr8	120295261	120295262	chr8:120295262:C:T	rs117201965	C	T	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr8	120566850	120566851	chr8:120566851:A:G	rs7826902	A	G	G	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr8	120866450	120866451	chr8:120866451:C:T	rs6651222	C	T	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr8	121038680	121038681	chr8:121038681:T:C	rs73315259	T	C	T	Sox3.mouse_HMG_1	6	1	+	2.727206614514259	-3.91888415511466	AAACCATGTTAGTTTTA
chr8	121129874	121129875	chr8:121129875:C:T	rs1231566690	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr8	121135842	121135843	chr8:121135843:T:C	rs77403953	T	C	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr8	121406149	121406150	chr8:121406150:A:G	rs1408564221	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr8	121406169	121406170	chr8:121406170:T:C	rs6995370	T	C	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr8	121455083	121455084	chr8:121455084:T:C	rs16895423	T	C	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr8	121611020	121611021	chr8:121611021:A:T	rs10956052	A	T	a	Sox3.mouse_HMG_1	0	1	+	4.621945857023083	2.5987915317068384	AAAAAAAAAAATTGTTT
chr8	121742898	121742899	chr8:121742899:C:A	rs181035945	C	A	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr8	122084684	122084685	chr8:122084685:C:T	rs6981337	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr8	122161469	122161470	chr8:122161470:G:T	rs4871223	G	T	G	Sox3.mouse_HMG_1	0	1	-	2.3960178920209705	3.9856094043731707	CACCTATATTAGTGTTT
chr8	122267050	122267051	chr8:122267051:C:A	rs2023109	C	A	a	Sox3.mouse_HMG_1	12	1	-	2.796850425582154	9.364978496249778	GAACAATTTTATGATTG
chr8	122311200	122311201	chr8:122311201:A:G	rs7825503	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.5175782832078812	-5.208555194094575	AAACAAAGAAAATGTAG
chr8	122623310	122623311	chr8:122623311:G:A	rs554645789	G	A	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr8	122623338	122623339	chr8:122623339:T:G	rs56282802	T	G	T	Sox3.mouse_HMG_1	5	1	-	5.361354948180532	-1.4517899061115527	AGGCAATGACATTATTT
chr8	122686471	122686472	chr8:122686472:A:G	rs16897304	A	G	A	Sox3.mouse_HMG_1	7	1	+	2.8825902957078697	3.37866061548518	GGGCAATATTAATGTTT
chr8	122746700	122746701	chr8:122746701:C:T	rs6981534	C	T	T	Sox3.mouse_HMG_1	16	1	-	6.640082021558893	6.206250576837785	CAGCAATATCATTGATG
chr8	122875268	122875269	chr8:122875269:G:T	rs10097365	G	T	T	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr8	122994720	122994721	chr8:122994721:C:T	rs149810257	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr8	123157227	123157228	chr8:123157228:T:C	rs182134026	T	C	T	Sox3.mouse_HMG_1	4	1	-	5.849446075038058	-0.9628790169391771	GCACAATAATTTTGTTT
chr8	123157229	123157230	chr8:123157230:T:G	rs528472445	T	G	T	Sox3.mouse_HMG_1	2	1	-	5.849446075038058	-0.575888804683255	GCACAATAATTTTGTTT
chr8	123427933	123427934	chr8:123427934:A:G	rs6999234	A	G	A	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr8	123466488	123466489	chr8:123466489:A:C	rs528338809	A	C	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr8	123702481	123702482	chr8:123702482:T:C	rs13258681	T	C	T	Sox3.mouse_HMG_1	15	1	+	4.942425456142037	0.6399236583465538	AAGCAATTTCAGTTTTT
chr8	123877805	123877806	chr8:123877806:C:T	rs6470197	C	T	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr8	124259728	124259729	chr8:124259729:G:A	rs10087137	G	A	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr8	124618902	124618903	chr8:124618903:C:T	rs4871517	C	T	C	Sox3.mouse_HMG_1	16	1	-	0.45868110455186967	0.024849659830762594	CAGCCATGACACTGTTG
chr8	124649235	124649236	chr8:124649236:G:A	rs28703083	G	A	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr8	124688908	124688909	chr8:124688909:T:C	rs2382994	T	C	T	Sox3.mouse_HMG_1	14	1	+	3.1750091509168183	-2.9348817643318887	TAAAAATGAAAATGTTG
chr8	124688920	124688921	chr8:124688921:C:A	rs919542	C	A	C	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr8	124691043	124691044	chr8:124691044:G:A	rs3857954	G	A	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr8	124701070	124701071	chr8:124701071:A:C	rs79330310	A	C	A	Sox3.mouse_HMG_1	11	1	-	6.4323987557212945	4.3044200888604145	AAACAATTTTTTTGTGT
chr8	124717961	124717962	chr8:124717962:G:A	rs4870920	G	A	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr8	124755969	124755970	chr8:124755970:C:T	rs16893088	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr8	125075567	125075568	chr8:125075568:G:A	rs74766652	G	A	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr8	125075571	125075572	chr8:125075572:C:A	rs74638659	C	A	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr8	125131076	125131077	chr8:125131077:A:G	rs2891633	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr8	125192209	125192210	chr8:125192210:C:T	rs7839274	C	T	C	Sox3.mouse_HMG_1	10	1	+	5.118290617490182	4.87001109290443	AAATAATTATCTTGTTG
chr8	125192216	125192217	chr8:125192217:A:G	rs34110249	A	G	A	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr8	125255387	125255388	chr8:125255388:T:G	rs7008482	T	G	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr8	125294674	125294675	chr8:125294675:G:A	rs10101690	G	A	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr8	125479490	125479491	chr8:125479491:G:T	rs2954031	G	T	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr8	125529431	125529432	chr8:125529432:T:C	rs1809166	T	C	C	Sox3.mouse_HMG_1	15	1	+	3.2947860070177	-1.0077157907777832	ACAAAATGAAAGTGTTG
chr8	125676794	125676795	chr8:125676795:T:C	rs11997786	T	C	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr8	125702810	125702811	chr8:125702811:C:T	rs1985784	C	T	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr8	125702823	125702824	chr8:125702824:C:A	rs72724669	C	A	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr8	125760318	125760319	chr8:125760319:C:T	rs10956258	C	T	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr8	126022374	126022375	chr8:126022375:A:G	rs530312011	A	G	A	Sox3.mouse_HMG_1	12	1	-	3.138562684937471	-3.0679029002803806	TAAGAATGGTATTATTG
chr8	126668285	126668286	chr8:126668286:A:C	rs7828002	A	C	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr8	126668328	126668329	chr8:126668329:A:T	rs16901632	A	T	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr8	126904124	126904125	chr8:126904125:A:G	rs1516937	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr8	126926970	126926971	chr8:126926971:T:C	rs10097524	T	C	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr8	126966767	126966768	chr8:126966768:A:G	rs118102449	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr8	126990215	126990216	chr8:126990216:A:T	rs1027039	A	T	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr8	127035032	127035033	chr8:127035033:G:C	rs11775448	G	C	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr8	127081295	127081296	chr8:127081296:T:C	rs4871008	T	C	C	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr8	127214942	127214943	chr8:127214943:A:G	rs72728027	A	G	A	Sox3.mouse_HMG_1	14	1	+	3.8715344982262545	2.730362595139349	AAGCAATAATATTAATT
chr8	127225237	127225238	chr8:127225238:A:G	rs1567059	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr8	127490337	127490338	chr8:127490338:C:T	rs7820229	C	T	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr8	127564089	127564090	chr8:127564090:G:C	rs10956374	G	C	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr8	127584168	127584169	chr8:127584169:G:C	rs13282785	G	C	C	Sox3.mouse_HMG_1	9	1	-	5.232938368369868	-0.8037056381805642	TTGCAATAGCAGTGTTT
chr8	127776738	127776739	chr8:127776739:A:G	rs4395860	A	G	G	Sox3.mouse_HMG_1	9	1	-	2.8244954321264557	2.8602015570110253	AAACAATGCTACAGTGT
chr8	127784967	127784968	chr8:127784968:T:G	rs6470575	T	G	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr8	127880304	127880305	chr8:127880305:C:T	rs4733801	C	T	T	Sox3.mouse_HMG_1	0	1	-	1.7529343955711054	3.1257510610326453	GAAAAAAGGAATTGTTG
chr8	127938111	127938112	chr8:127938112:C:A	rs11782183	C	A	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr8	127981474	127981475	chr8:127981475:C:T	rs115311148	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr8	128003636	128003637	chr8:128003637:G:T	rs4733588	G	T	T	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr8	128184799	128184800	chr8:128184800:G:T	rs80272901	G	T	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr8	128190383	128190384	chr8:128190384:G:A	rs117412945	G	A	G	Sox3.mouse_HMG_1	3	1	-	7.552180706221989	1.5694045880876668	CAACAATGATCTTGTAG
chr8	128318021	128318022	chr8:128318022:C:T	rs4470994	C	T	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr8	128376640	128376641	chr8:128376641:A:T	rs112287406	A	T	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr8	128557124	128557125	chr8:128557125:G:A	rs1561924	G	A	A	Sox3.mouse_HMG_1	9	1	-	4.490056168604689	4.454350043720121	GATCAATGGCAGTGATT
chr8	128754564	128754565	chr8:128754565:A:G	rs6470656	A	G	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr8	128939522	128939523	chr8:128939523:C:T	rs7815993	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr8	128973863	128973864	chr8:128973864:G:A	rs12546523	G	A	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr8	129161438	129161439	chr8:129161439:C:T	rs4645526	C	T	C	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr8	129262156	129262157	chr8:129262157:C:T	rs13264687	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr8	129633917	129633918	chr8:129633918:T:C	rs6989425	T	C	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr8	129650875	129650876	chr8:129650876:A:G	rs13264700	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr8	129730492	129730493	chr8:129730493:C:T	rs75439945	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr8	129730497	129730498	chr8:129730498:C:T	rs3885952	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr8	129998558	129998559	chr8:129998559:C:T	rs112271978	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr8	130478479	130478480	chr8:130478480:T:C	rs7004992	T	C	C	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr8	130478483	130478484	chr8:130478484:T:C	rs12543635	T	C	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr8	130486322	130486323	chr8:130486323:G:A	rs183498141	G	A	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr8	130503902	130503903	chr8:130503903:G:C	rs114695550	G	C	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr8	130549869	130549870	chr8:130549870:A:T	rs4276705	A	T	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr8	132407391	132407392	chr8:132407392:A:C	rs2721894	A	C	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr8	132835444	132835445	chr8:132835445:C:G	rs10097664	C	G	C	Sox3.mouse_HMG_1	16	1	+	3.7676722847965842	6.403617309660454	CAAAAATTTTAGTGTTC
chr8	132946258	132946259	chr8:132946259:A:C	rs77027029	A	C	A	Sox3.mouse_HMG_1	15	1	-	1.7175845856074434	-2.8488342719985917	GAACAAAAACATTCTTC
chr8	133086420	133086421	chr8:133086421:G:A	rs2739171	G	A	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr8	133563449	133563450	chr8:133563450:G:T	rs117555140	G	T	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr8	133579537	133579538	chr8:133579538:T:C	rs73363005	T	C	T	Sox3.mouse_HMG_1	8	1	-	2.8642271255476808	1.837813650537045	AGACAGTGATATTGATG
chr8	133794562	133794563	chr8:133794563:C:T	rs114490556	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr8	134305898	134305899	chr8:134305899:C:T	rs1867950	C	T	C	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr8	134636153	134636154	chr8:134636154:G:T	rs2028557	G	T	G	Sox3.mouse_HMG_1	12	1	+	5.158707771672705	11.726835842340327	AAACTATGATAGGGTTT
chr8	134638239	134638240	chr8:134638240:G:A	rs1036821	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr8	134757645	134757646	chr8:134757646:A:G	rs67047054	A	G	a	Sox3.mouse_HMG_1	2	1	+	2.5795900082889345	-1.8283449706915265	AGACAATGGAATTGAGG
chr8	134757669	134757670	chr8:134757670:G:A	rs111593990	G	A	g	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr8	134800172	134800173	chr8:134800173:G:A	rs7460121	G	A	G	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr8	135418090	135418091	chr8:135418091:C:A	rs716035	C	A	A	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr8	135418103	135418104	chr8:135418104:G:A	rs117970095	G	A	G	Sox3.mouse_HMG_1	7	1	+	2.8814318177022593	2.3853614979249484	TGCCAATGAAAGTGTTG
chr8	135516340	135516341	chr8:135516341:C:G	rs6992764	C	G	C	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr8	135901171	135901172	chr8:135901172:C:T	rs6999978	C	T	-	Sox3.mouse_HMG_1	14	1	-	4.234700260614883	5.375872163701788	TAATAATTACATTGGTT
chr8	136040980	136040981	chr8:136040981:G:A	rs2317349	G	A	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr8	136074546	136074547	chr8:136074547:A:G	rs16905496	A	G	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr8	136143332	136143333	chr8:136143333:G:A	rs4909572	G	A	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr8	136452527	136452528	chr8:136452528:T:C	rs6999078	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr8	136525768	136525769	chr8:136525769:A:G	rs4909598	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr8	137010028	137010029	chr8:137010029:A:G	rs7357354	A	G	A	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr8	137150967	137150968	chr8:137150968:A:G	rs7009688	A	G	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr8	137450868	137450869	chr8:137450869:T:A	rs17629089	T	A	T	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr8	138323501	138323502	chr8:138323502:A:G	rs1512393	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr8	138699485	138699486	chr8:138699486:T:A	rs4545143	T	A	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr8	138830975	138830976	chr8:138830976:A:C	rs59176636	A	C	A	Sox3.mouse_HMG_1	10	1	+	1.4429064543103536	-5.121749000270908	GAACAACCTCATTGTCT
chr8	138896538	138896539	chr8:138896539:G:C	rs9644439	G	C	C	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr8	139173960	139173961	chr8:139173961:G:C	rs7001924	G	C	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr8	140060393	140060394	chr8:140060394:T:A	rs146889587	T	A	T	Sox3.mouse_HMG_1	14	1	+	1.0839631413018955	-4.2015142073931955	CAGCAATGGCCTTGTGG
chr8	140102728	140102729	chr8:140102729:G:A	rs59302559	G	A	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr8	140512769	140512770	chr8:140512770:C:T	chr8:140512770:C:T	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr8	140577304	140577305	chr8:140577305:C:T	rs9694342	C	T	T	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr8	140686821	140686822	chr8:140686822:G:A	rs115120329	G	A	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr8	140686845	140686846	chr8:140686846:T:C	rs73714729	T	C	T	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr8	141185920	141185921	chr8:141185921:A:C	rs4324959	A	C	A	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr8	141205132	141205133	chr8:141205133:A:T	rs7837832	A	T	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr8	141214895	141214896	chr8:141214896:C:T	chr8:141214896:C:T	C	T	C	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr8	141265914	141265915	chr8:141265915:A:T	rs762922581	A	T	A	Sox3.mouse_HMG_1	9	1	-	2.466891969681693	1.0489537077371602	GAACAATTGTAGTTTCG
chr8	141465043	141465044	chr8:141465044:C:A	rs7846272	C	A	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr8	141622214	141622215	chr8:141622215:T:C	rs13263959	T	C	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr8	141679124	141679125	chr8:141679125:A:G	rs868481	A	G	G	Sox3.mouse_HMG_1	2	1	+	4.36193644743497	-0.04599853154549016	GAAGAATGCCAGTGTCT
chr8	142059052	142059053	chr8:142059053:G:A	rs183835912	G	A	G	Sox3.mouse_HMG_1	13	1	-	3.5482389575721935	3.2872251322025745	CAACAATGCCATTCGTA
chr8	143136234	143136235	chr8:143136235:G:C	rs939967563	G	C	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr8	143467325	143467326	chr8:143467326:A:G	rs188342475	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr8	143467353	143467354	chr8:143467354:G:A	rs141299726	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr8	143900794	143900795	chr8:143900795:G:A	rs7831595	G	A	.	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr8	145022140	145022141	chr8:145022141:A:G	rs12548151	A	G	a	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr9	222379	222380	chr9:222380:C:G	rs77585619	C	G	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr9	474204	474205	chr9:474205:A:G	rs7867795	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr9	474238	474239	chr9:474239:G:A	rs7850568	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr9	534257	534258	chr9:534258:G:C	rs7031554	G	C	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr9	590226	590227	chr9:590227:G:T	rs16920607	G	T	g	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr9	592849	592850	chr9:592850:C:T	rs2804285	C	T	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr9	594261	594262	chr9:594262:A:C	rs2641998	A	C	A	Sox3.mouse_HMG_1	1	1	+	2.754813253855191	-2.8830416424059204	AAGCAATTAAATAGTAG
chr9	801570	801571	chr9:801571:G:A	rs10815717	G	A	G	Sox3.mouse_HMG_1	3	1	-	5.226905673753219	-0.7558704443811028	AAGCAATTTCTTTGTTA
chr9	887018	887019	chr9:887019:A:G	rs10815945	A	G	A	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr9	969043	969044	chr9:969044:A:G	rs4742608	A	G	G	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr9	1049615	1049616	chr9:1049616:T:G	rs6474542	T	G	G	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr9	1216634	1216635	chr9:1216635:C:T	rs3920797	C	T	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr9	1359631	1359632	chr9:1359632:C:T	rs635639	C	T	T	Sox3.mouse_HMG_1	3	1	+	5.751682960579103	-0.2310931575552181	AGACAATTGAATTCTTT
chr9	1459662	1459663	chr9:1459663:T:C	rs10114417	T	C	T	Sox3.mouse_HMG_1	5	1	-	15.082687801560363	8.356554324257907	CAACAATGATATTGTAT
chr9	1535169	1535170	chr9:1535170:G:A	rs541318510	G	A	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr9	1603984	1603985	chr9:1603985:C:G	rs702161	C	G	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr9	2018657	2018658	chr9:2018658:C:T	rs1999979	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr9	2019053	2019054	chr9:2019054:T:C	chr9:2019054:T:C	T	C	T	Sox3.mouse_HMG_1	15	1	-	5.83588473946971	4.766309503656146	AAACATTTGCATTGTAA
chr9	2209975	2209976	chr9:2209976:A:T	rs10125847	A	T	T	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr9	2210009	2210010	chr9:2210010:T:C	rs10965210	T	C	T	Sox3.mouse_HMG_1	2	1	-	7.259796033137038	2.8518610541565774	AAATAATAATAGTGTCT
chr9	2228404	2228405	chr9:2228405:G:C	rs10965286	G	C	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr9	2237179	2237180	chr9:2237180:G:A	rs73641017	G	A	G	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr9	2526148	2526149	chr9:2526149:G:C	rs2183736	G	C	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr9	2540567	2540568	chr9:2540568:G:A	rs1398432	G	A	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr9	2632364	2632365	chr9:2632365:T:G	rs12336893	T	G	T	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr9	2639532	2639533	chr9:2639533:A:G	rs34156497	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr9	3036725	3036726	chr9:3036726:A:T	rs3842926	A	T	A	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr9	3137795	3137796	chr9:3137796:T:C	rs7020987	T	C	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr9	3199926	3199927	chr9:3199927:C:G	rs7868383	C	G	G	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr9	3708886	3708887	chr9:3708887:A:G	rs539165376	A	G	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr9	3746738	3746739	chr9:3746739:C:T	rs112549651	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr9	3837051	3837052	chr9:3837052:C:T	rs10973728	C	T	C	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr9	3856677	3856678	chr9:3856678:A:G	rs10814699	A	G	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr9	3971438	3971439	chr9:3971439:G:C	rs5020205	G	C	G	Sox3.mouse_HMG_1	8	1	-	2.709865448234222	2.8160124366026613	GAAAAATACCATTTTTA
chr9	3980481	3980482	chr9:3980482:T:G	chr9:3980482:T:G	T	G	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr9	4049356	4049357	chr9:4049357:G:A	rs1556988	G	A	A	Sox3.mouse_HMG_1	9	1	-	1.1900421788276618	1.154336053943094	TAACAATCACGTTGTAG
chr9	4069812	4069813	chr9:4069813:A:G	rs2027393	A	G	G	Sox3.mouse_HMG_1	6	1	-	1.3002230210266281	-5.3458677486022905	GCACAATGGTATTTTAG
chr9	4115459	4115460	chr9:4115460:G:C	rs806055	G	C	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr9	4211312	4211313	chr9:4211313:G:T	rs74526649	G	T	G	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr9	4289808	4289809	chr9:4289809:G:T	rs2380949	G	T	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr9	4334457	4334458	chr9:4334458:C:T	rs117566625	C	T	C	Sox3.mouse_HMG_1	3	1	+	4.470764066571961	-1.5120120515623572	AAACAATTGTAGTGCAA
chr9	4334460	4334461	chr9:4334461:T:C	rs116333668	T	C	T	Sox3.mouse_HMG_1	6	1	+	4.470764066571961	-2.175326703056955	AAACAATTGTAGTGCAA
chr9	4530687	4530688	chr9:4530688:G:A	rs74810367	G	A	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr9	4555436	4555437	chr9:4555437:C:T	rs62542090	C	T	c	Sox3.mouse_HMG_1	4	1	+	5.586535294474652	5.9975405829584325	AAAACATGCTATTGTTT
chr9	4644977	4644978	chr9:4644978:T:A	rs418122	T	A	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr9	4644978	4644979	chr9:4644979:T:C	rs364802	T	C	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr9	4677452	4677453	chr9:4677453:T:C	rs7847302	T	C	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr9	4677453	4677454	chr9:4677454:G:T	rs10974724	G	T	G	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr9	4834393	4834394	chr9:4834394:A:G	rs457287	A	G	A	Sox3.mouse_HMG_1	2	1	+	5.10537016387111	0.6974351848906493	TAACAGTGAAATTGTAA
chr9	4834419	4834420	chr9:4834420:G:A	rs10974805	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr9	4853886	4853887	chr9:4853887:G:T	rs80277240	G	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr9	4863304	4863305	chr9:4863305:T:A	rs10739069	T	A	T	Sox3.mouse_HMG_1	6	1	+	4.3808163161287315	-2.527638717967678	AAAAAATTAAATTCTTT
chr9	5388786	5388787	chr9:5388787:G:A	rs10975089	G	A	a	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr9	5389418	5389419	chr9:5389419:G:A	rs111832850	G	A	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr9	5420253	5420254	chr9:5420254:G:A	rs10121219	G	A	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr9	5423175	5423176	chr9:5423176:T:A	rs12003672	T	A	T	Sox3.mouse_HMG_1	12	1	+	2.1423833423166916	-3.4458087313164194	CAATATTGAAAGTGTTT
chr9	5446018	5446019	chr9:5446019:C:A	rs77524007	C	A	C	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr9	5517264	5517265	chr9:5517265:G:A	rs28581351	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr9	6406427	6406428	chr9:6406428:G:T	rs10758782	G	T	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr9	6525462	6525463	chr9:6525463:C:T	rs12348313	C	T	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr9	6667887	6667888	chr9:6667888:G:A	rs13440233	G	A	g	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr9	6667927	6667928	chr9:6667928:C:A	rs820503	C	A	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr9	6803075	6803076	chr9:6803076:G:A	rs62567989	G	A	G	Sox3.mouse_HMG_1	9	1	-	2.4036097214019176	2.3679035965173494	CCACAATTACGGTGTTT
chr9	6874034	6874035	chr9:6874035:G:A	rs10975868	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr9	6931260	6931261	chr9:6931261:A:C	rs17595843	A	C	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr9	6988418	6988419	chr9:6988419:T:C	rs2760648	T	C	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr9	6988438	6988439	chr9:6988439:T:C	rs2760649	T	C	T	Sox3.mouse_HMG_1	11	1	+	0.7903433146326735	-5.267112794327679	CAACATTGCTATTGAAG
chr9	7076462	7076463	chr9:7076463:G:A	rs1570512	G	A	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr9	7171711	7171712	chr9:7171712:C:T	rs112126468	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr9	7177283	7177284	chr9:7177284:A:G	rs2026714	A	G	A	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr9	7186362	7186363	chr9:7186363:A:G	rs2770741	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr9	7186362	7186363	chr9:7186363:A:T	chr9:7186363:A:T	A	T	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr9	7303864	7303865	chr9:7303865:G:A	rs10976202	G	A	G	Sox3.mouse_HMG_1	11	1	+	2.092080908850827	-1.6423965181949214	AGACAATCAGAGTGTTT
chr9	7519245	7519246	chr9:7519246:C:G	rs774736272	C	G	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr9	7755442	7755443	chr9:7755443:A:G	rs1332924	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr9	7857878	7857879	chr9:7857879:A:C	rs10976628	A	C	A	Sox3.mouse_HMG_1	16	1	-	2.4333348316123136	1.4674831908552013	GAACAATAAGATTTTAT
chr9	7906932	7906933	chr9:7906933:C:A	rs12347060	C	A	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr9	7963226	7963227	chr9:7963227:A:G	rs34119686	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr9	8012249	8012250	chr9:8012250:T:C	rs79089176	T	C	T	Sox3.mouse_HMG_1	16	1	-	2.0826084353720624	2.5164398800931695	CAACAAATGTAGTGTAA
chr9	8264660	8264661	chr9:8264661:C:T	rs10976895	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr9	8430032	8430033	chr9:8430033:C:T	rs4742502	C	T	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr9	8468632	8468633	chr9:8468633:T:C	rs13291309	T	C	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr9	8637992	8637993	chr9:8637993:C:T	rs72698264	C	T	T	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr9	8799818	8799819	chr9:8799819:C:T	rs10123595	C	T	T	Sox3.mouse_HMG_1	8	1	-	3.2957404707445743	4.322153945755211	AAACATTAGAAGTGTAA
chr9	8799834	8799835	chr9:8799835:C:G	rs115743168	C	G	C	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr9	8816624	8816625	chr9:8816625:A:G	rs1422003714	A	G	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr9	8816664	8816665	chr9:8816665:T:C	rs7872026	T	C	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr9	8843784	8843785	chr9:8843785:C:A	rs78749485	C	A	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr9	9016666	9016667	chr9:9016667:C:G	rs444291	C	G	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr9	9044830	9044831	chr9:9044831:G:A	rs72694907	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr9	9102676	9102677	chr9:9102677:A:G	rs7020063	A	G	A	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr9	9411369	9411370	chr9:9411370:A:G	rs11999849	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr9	9499125	9499126	chr9:9499126:G:A	rs2382019	G	A	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr9	9561123	9561124	chr9:9561124:G:A	rs77127788	G	A	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr9	9607024	9607025	chr9:9607025:G:C	rs16929907	G	C	G	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr9	9726250	9726251	chr9:9726251:A:C	rs7048068	A	C	A	Sox3.mouse_HMG_1	14	1	-	3.0814235213417183	-3.345225730440279	TGCCAATGTCAGTGTTA
chr9	9924591	9924592	chr9:9924592:A:G	rs12553808	A	G	a	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr9	9951279	9951280	chr9:9951280:G:A	rs73643834	G	A	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr9	10131154	10131155	chr9:10131155:G:A	rs291305	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr9	10192289	10192290	chr9:10192290:A:C	rs294856	A	C	A	Sox3.mouse_HMG_1	15	1	-	4.305018445724536	-0.2614004118814991	AAACAACTACAGAGTTT
chr9	10232764	10232765	chr9:10232765:C:G	rs13288348	C	G	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr9	10265616	10265617	chr9:10265617:C:T	rs2475346	C	T	C	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr9	10273832	10273833	chr9:10273833:C:G	rs1323502	C	G	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr9	10678835	10678836	chr9:10678836:A:G	rs10756095	A	G	A	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr9	10996089	10996090	chr9:10996090:C:T	rs913922	C	T	T	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr9	11780272	11780273	chr9:11780273:T:A	rs12378084	T	A	A	Sox3.mouse_HMG_1	1	1	-	1.0408725896068962	-3.8494663366673043	AAACAATAACGCTGTCA
chr9	12020174	12020175	chr9:12020175:A:G	rs76689331	A	G	A	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr9	12414206	12414207	chr9:12414207:T:G	rs1984031	T	G	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr9	12599560	12599561	chr9:12599561:C:T	rs13283146	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr9	12723112	12723113	chr9:12723113:G:A	rs12379260	G	A	A	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr9	13144078	13144079	chr9:13144079:G:T	rs1854908	G	T	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr9	13365528	13365529	chr9:13365529:A:G	rs13284661	A	G	A	Sox3.mouse_HMG_1	5	1	+	5.15253720217452	-1.573596275127936	GGACAATTATTTTGTTG
chr9	13493397	13493398	chr9:13493398:C:T	rs17521660	C	T	C	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr9	13555723	13555724	chr9:13555724:C:T	rs72605686	C	T	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr9	13619784	13619785	chr9:13619785:T:C	rs12341613	T	C	T	Sox3.mouse_HMG_1	5	1	-	1.0310455218638344	-5.695087955438622	AAGCAATATCACTGGTG
chr9	13619809	13619810	chr9:13619810:C:T	rs185433010	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr9	13705859	13705860	chr9:13705860:G:A	rs180827221	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr9	13705882	13705883	chr9:13705883:T:C	rs992457	T	C	T	Sox3.mouse_HMG_1	2	1	-	5.646965855973794	1.2390308769933323	ACATAATTACATTGTTA
chr9	13929343	13929344	chr9:13929344:G:A	rs35165583	G	A	G	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr9	14405297	14405298	chr9:14405298:T:C	rs1323350	T	C	T	Sox3.mouse_HMG_1	7	1	-	3.84126367044194	4.337333990219251	ATACAATAGAAGTTTTT
chr9	14814668	14814669	chr9:14814669:T:C	rs147801323	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr9	14932604	14932605	chr9:14932605:A:G	rs75900401	A	G	G	Sox3.mouse_HMG_1	8	1	+	5.254737458158058	4.228323983147422	TAATAAAGATATTGTTT
chr9	14989878	14989879	chr9:14989879:T:C	rs10810310	T	C	T	Sox3.mouse_HMG_1	15	1	+	2.716661537961393	-1.5858402598340902	AAACCATAAAAGTGATA
chr9	14989891	14989892	chr9:14989892:T:A	rs7028104	T	A	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr9	15069248	15069249	chr9:15069249:G:C	rs10961860	G	C	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr9	15069257	15069258	chr9:15069258:A:G	rs72698524	A	G	A	Sox3.mouse_HMG_1	14	1	-	1.21741911611683	-4.892471799131877	CAACAAAGGCAGTTTTG
chr9	15329935	15329936	chr9:15329936:A:G	rs189152814	A	G	a	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr9	15533463	15533464	chr9:15533464:C:A	rs114829994	C	A	C	Sox3.mouse_HMG_1	3	1	+	1.7446651231751389	-4.98004833968856	GAACCATAACATTTTAT
chr9	16098364	16098365	chr9:16098365:A:G	rs75443270	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr9	16105088	16105089	chr9:16105089:A:G	rs55776480	A	G	A	Sox3.mouse_HMG_1	12	1	-	2.668633115949896	-3.537832469267956	AAAGAATTTTAGTCTTT
chr9	16152215	16152216	chr9:16152216:C:G	rs62547306	C	G	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr9	16197114	16197115	chr9:16197115:T:C	rs7020120	T	C	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr9	16282415	16282416	chr9:16282416:T:G	rs56152796	T	G	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr9	16282420	16282421	chr9:16282421:G:A	rs55650163	G	A	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr9	16289749	16289750	chr9:16289750:C:G	rs150791389	C	G	C	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr9	16336473	16336474	chr9:16336474:A:T	rs66838939	A	T	T	Sox3.mouse_HMG_1	7	1	+	3.6455755272503128	2.604096742285469	AACCAATATTATTGAAT
chr9	16357577	16357578	chr9:16357578:T:C	rs7028338	T	C	T	Sox3.mouse_HMG_1	4	1	-	6.266230470372502	-0.5460946216047339	GCACAATGTCATTATTT
chr9	16425800	16425801	chr9:16425801:T:C	rs112977712	T	C	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr9	16461430	16461431	chr9:16461431:G:C	rs1927636	G	C	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr9	16515298	16515299	chr9:16515299:G:A	rs76982071	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr9	16628248	16628249	chr9:16628249:A:G	rs76753553	A	G	A	Sox3.mouse_HMG_1	7	1	+	6.33296061206728	6.829030931844592	AAGCAATATAAGTGTGT
chr9	16884794	16884795	chr9:16884795:A:G	rs115860057	A	G	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr9	17520855	17520856	chr9:17520856:T:A	rs4557797	T	A	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr9	17579935	17579936	chr9:17579936:A:G	rs150030811	A	G	A	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr9	17731640	17731641	chr9:17731641:A:G	rs12554313	A	G	G	Sox3.mouse_HMG_1	10	1	+	4.5111443129843645	-2.3971008459869765	GTAAAATTCTATTGTTT
chr9	17782772	17782773	chr9:17782773:A:G	rs10756912	A	G	A	Sox3.mouse_HMG_1	11	1	+	4.62646601224802	8.360943439293768	AAAAAATTAAAATGTTT
chr9	17811311	17811312	chr9:17811312:A:G	rs13301883	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr9	17865867	17865868	chr9:17865868:A:G	rs17765335	A	G	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr9	18115482	18115483	chr9:18115483:A:T	rs117285455	A	T	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr9	18239200	18239201	chr9:18239201:C:T	rs10756951	C	T	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr9	18346979	18346980	chr9:18346980:T:A	rs4961640	T	A	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr9	18708176	18708177	chr9:18708177:G:T	rs521911	G	T	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr9	18849396	18849397	chr9:18849397:A:G	rs148478768	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.8558345720320566	-4.8702989052703956	AAACAATGACAGTTAGT
chr9	18921538	18921539	chr9:18921539:T:C	rs10963841	T	C	T	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr9	19018561	19018562	chr9:19018562:T:C	rs10963907	T	C	T	Sox3.mouse_HMG_1	4	1	-	1.787351696038025	-5.02497339593921	AAGCAATACTTTTGTGG
chr9	19457948	19457949	chr9:19457949:A:G	rs10811188	A	G	A	Sox3.mouse_HMG_1	1	1	-	4.280260308863751	3.5327443388768405	ATACAATGCTATTTTAT
chr9	19507992	19507993	chr9:19507993:T:C	rs3739482	T	C	T	Sox3.mouse_HMG_1	8	1	-	5.0144219050003525	3.988008429989717	AAACAAAGAAAATGTTG
chr9	19801037	19801038	chr9:19801038:G:T	rs117681571	G	T	G	Sox3.mouse_HMG_1	13	1	+	3.9074117170457505	-2.4617078983497844	TAGCAAAAGTATTGTTA
chr9	19932970	19932971	chr9:19932971:G:C	rs2105396	G	C	C	Sox3.mouse_HMG_1	3	1	-	2.986258525445844	-3.9207764942118097	CAACAATTCTATATTTG
chr9	19940144	19940145	chr9:19940145:G:T	rs10124918	G	T	T	Sox3.mouse_HMG_1	12	1	-	1.8916790657635818	2.509952577348322	AAACAATGCAAGCGGTG
chr9	19980276	19980277	chr9:19980277:A:G	rs1857432	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr9	20284947	20284948	chr9:20284948:T:A	rs10811341	T	A	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr9	20286679	20286680	chr9:20286680:C:T	rs12353526	C	T	C	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr9	20321212	20321213	chr9:20321213:C:T	rs1034585	C	T	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr9	20552721	20552722	chr9:20552722:C:T	rs10121833	C	T	T	Sox3.mouse_HMG_1	5	1	-	8.482602942865958	15.208736420168412	TAACAGTTATATTGTTA
chr9	21556874	21556875	chr9:21556875:A:G	chr9:21556875:A:G	A	G	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr9	21556881	21556882	chr9:21556882:T:C	rs4141713	T	C	C	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr9	21771021	21771022	chr9:21771022:A:G	rs138489791	A	G	A	Sox3.mouse_HMG_1	15	1	-	1.765447303470971	-2.5370544943245124	TAAAAATGAAAGTGCTT
chr9	21993048	21993049	chr9:21993049:G:A	rs3731191	G	A	G	Sox3.mouse_HMG_1	11	1	+	3.459196713678314	-0.27528071336743265	AAACACTGATAGTTTTA
chr9	22003367	22003368	chr9:22003368:G:A	rs1063192	G	A	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr9	22049656	22049657	chr9:22049657:G:A	rs10811645	G	A	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr9	22097693	22097694	chr9:22097694:G:A	rs6475607	G	A	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr9	22212314	22212315	chr9:22212315:T:C	rs114110369	T	C	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr9	22238719	22238720	chr9:22238720:T:C	rs62559494	T	C	T	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr9	22342482	22342483	chr9:22342483:T:C	rs1327060	T	C	T	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr9	22990144	22990145	chr9:22990145:C:T	rs2126637	C	T	T	Sox3.mouse_HMG_1	3	1	+	11.241227021280567	5.2584509031462465	AAACAATACCATTTTTG
chr9	23471508	23471509	chr9:23471509:T:C	chr9:23471509:T:C	T	C	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr9	23471509	23471510	chr9:23471510:T:G	chr9:23471510:T:G	T	G	T	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr9	23645190	23645191	chr9:23645191:C:T	rs9886753	C	T	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr9	23660109	23660110	chr9:23660110:A:G	rs7041235	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr9	23663522	23663523	chr9:23663523:T:C	rs12682911	T	C	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr9	24794513	24794514	chr9:24794514:A:G	rs1926677	A	G	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr9	25036154	25036155	chr9:25036155:T:C	rs72718145	T	C	T	Sox3.mouse_HMG_1	11	1	+	2.5474280443322628	-3.5100280646280906	AGACAGTGATATGGTTT
chr9	25189608	25189609	chr9:25189609:G:A	rs7865045	G	A	G	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr9	25189614	25189615	chr9:25189615:T:C	rs9406855	T	C	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr9	25322074	25322075	chr9:25322075:C:T	rs1327391	C	T	C	Sox3.mouse_HMG_1	11	1	-	0.9965322716129297	-2.737945155432819	AAACAAATTTTGTGTTG
chr9	25393679	25393680	chr9:25393680:C:G	rs10757524	C	G	G	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr9	25454073	25454074	chr9:25454074:C:T	rs4977982	C	T	C	Sox3.mouse_HMG_1	15	1	-	2.485798294992317	3.5553735308058814	AAATTATGTTATTGTGT
chr9	25457478	25457479	chr9:25457479:C:T	rs12377132	C	T	T	Sox3.mouse_HMG_1	7	1	-	0.22635646758587258	-0.2697138521914385	AGACAAGGGCAGAGTTT
chr9	25564465	25564466	chr9:25564466:C:T	rs13295475	C	T	C	Sox3.mouse_HMG_1	14	1	-	3.916797714684039	5.057969617770945	CAACAATGATAGTAGTT
chr9	26265668	26265669	chr9:26265669:T:G	rs73425990	T	G	T	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr9	26266242	26266243	chr9:26266243:T:C	rs115120252	T	C	T	Sox3.mouse_HMG_1	7	1	-	0.8821751598973941	1.378245479674706	GGGCAGTAGCATTGTTG
chr9	26565914	26565915	chr9:26565915:A:C	rs1887221	A	C	A	Sox3.mouse_HMG_1	16	1	-	8.940428836590176	7.974577195833064	AAGCAATGTGATTGTTT
chr9	26896721	26896722	chr9:26896722:C:T	rs77953007	C	T	c	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr9	27179531	27179532	chr9:27179532:A:G	rs541615	A	G	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr9	27297801	27297802	chr9:27297802:C:A	rs77573480	C	A	C	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr9	27303033	27303034	chr9:27303034:T:C	rs59382932	T	C	T	Sox3.mouse_HMG_1	14	1	+	2.082849558951748	-4.027041356296959	AAACAAACGCATTGTGT
chr9	27572312	27572313	chr9:27572313:A:C	rs73643419	A	C	A	Sox3.mouse_HMG_1	-1	0	+	0	0	.
chr9	27581488	27581489	chr9:27581489:G:A	rs111787602	G	A	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr9	27584900	27584901	chr9:27584901:T:C	rs10757670	T	C	T	Sox3.mouse_HMG_1	12	1	+	7.8699612056236	1.6634956204057485	AAATAATGTCATTGTGG
chr9	27967243	27967244	chr9:27967244:T:C	rs7852245	T	C	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr9	28778419	28778420	chr9:28778420:T:C	rs1027346	T	C	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr9	29077748	29077749	chr9:29077749:A:T	rs17419297	A	T	T	Sox3.mouse_HMG_1	10	1	+	9.25933564959844	2.4464006704314234	GAATAATAACAGTGTTG
chr9	29440768	29440769	chr9:29440769:C:T	rs7037405	C	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr9	29440776	29440777	chr9:29440777:C:G	rs7037409	C	G	G	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr9	29465780	29465781	chr9:29465781:T:C	rs10465062	T	C	C	Sox3.mouse_HMG_1	12	1	+	2.0381329642127315	-4.16833262100512	AGGCAATTTCATTATTG
chr9	29513658	29513659	chr9:29513659:G:T	rs662482	G	T	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr9	29555473	29555474	chr9:29555474:T:C	rs492066	T	C	C	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr9	29556736	29556737	chr9:29556737:A:G	rs12554646	A	G	A	Sox3.mouse_HMG_1	14	1	-	6.010402944010776	-0.09948797123793074	TAAAAATAAAATTGTAT
chr9	29556760	29556761	chr9:29556761:C:A	rs10813122	C	A	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr9	29556766	29556767	chr9:29556767:C:A	rs646439	C	A	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr9	29657655	29657656	chr9:29657656:G:C	rs7024034	G	C	C	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr9	29686720	29686721	chr9:29686721:A:G	rs12004303	A	G	A	Sox3.mouse_HMG_1	11	1	-	4.517121914445691	-1.5403341945146616	GGACTATGTAATTGTTA
chr9	29867136	29867137	chr9:29867137:C:A	rs10757919	C	A	C	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr9	29869620	29869621	chr9:29869621:A:G	rs10969420	A	G	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr9	30198145	30198146	chr9:30198146:C:G	rs1892132	C	G	G	Sox3.mouse_HMG_1	11	1	-	3.286458017161496	-0.6430194249379769	GCACAATTATAGCGTTT
chr9	30698143	30698144	chr9:30698144:C:T	rs7027645	C	T	C	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr9	31243465	31243466	chr9:31243466:A:C	rs10758042	A	C	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr9	31350128	31350129	chr9:31350129:C:T	rs16924059	C	T	C	Sox3.mouse_HMG_1	7	1	-	2.6385384374374894	2.1424681176601785	AGGCAATGGTATTTTTA
chr9	31390862	31390863	chr9:31390863:A:T	rs16916884	A	T	A	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr9	31390879	31390880	chr9:31390880:C:A	rs113647642	C	A	C	Sox3.mouse_HMG_1	9	1	+	4.455031352265912	3.001386965436811	AAACAATTTCACTTTTG
chr9	31394026	31394027	chr9:31394027:A:G	rs7857709	A	G	G	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr9	31556419	31556420	chr9:31556420:C:T	rs112277393	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr9	32120210	32120211	chr9:32120211:C:T	rs3001896	C	T	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr9	32196937	32196938	chr9:32196938:G:A	rs10283638	G	A	G	Sox3.mouse_HMG_1	14	1	+	4.098645038210193	5.239816941297098	GAAGAATGACATTGGTA
chr9	32741594	32741595	chr9:32741595:C:T	rs1410832	C	T	T	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr9	32742518	32742519	chr9:32742519:G:A	rs144088720	G	A	G	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr9	32865679	32865680	chr9:32865680:G:T	rs10971167	G	T	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr9	33026122	33026123	chr9:33026123:G:A	rs16918953	G	A	G	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr9	33028978	33028979	chr9:33028979:C:T	rs12377889	C	T	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr9	33031019	33031020	chr9:33031020:A:C	rs143636261	A	C	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr9	33039025	33039026	chr9:33039026:T:A	rs7296	T	A	T	Sox3.mouse_HMG_1	16	1	+	10.20435204755238	8.80466896207416	AAACTATAGTAGTGTTT
chr9	33069182	33069183	chr9:33069183:C:T	rs13289835	C	T	T	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr9	33069206	33069207	chr9:33069207:C:A	rs62542143	C	A	C	Sox3.mouse_HMG_1	11	1	-	3.8904176130095007	6.01839627987038	GAAAAATAGCAGTGTGT
chr9	33081476	33081477	chr9:33081477:A:G	rs539626117	A	G	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr9	33256180	33256181	chr9:33256181:T:G	rs706118	T	G	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr9	33427702	33427703	chr9:33427703:T:C	rs10813977	T	C	T	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr9	33676028	33676029	chr9:33676029:C:A	rs855465	C	A	.	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr9	33680617	33680618	chr9:33680618:A:C	rs12683646	A	C	.	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr9	33813793	33813794	chr9:33813794:G:A	rs371399283	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr9	33813808	33813809	chr9:33813809:T:A	rs545054122	T	A	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr9	33896078	33896079	chr9:33896079:A:G	rs34576091	A	G	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr9	34097960	34097961	chr9:34097961:A:C	rs74523320	A	C	A	Sox3.mouse_HMG_1	28	0	-	0	0	.
chr9	34097994	34097995	chr9:34097995:A:G	chr9:34097995:A:G	A	G	A	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr9	34180582	34180583	chr9:34180583:G:A	chr9:34180583:G:A	G	A	g	Sox3.mouse_HMG_1	-1	0	-	0	0	.
chr9	34186395	34186396	chr9:34186396:T:C	rs756611485	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr9	34469918	34469919	chr9:34469919:G:T	chr9:34469919:G:T	G	T	G	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr9	34771232	34771233	chr9:34771233:T:G	rs117042148	T	G	T	Sox3.mouse_HMG_1	33	0	+	0	0	.
chr9	34960171	34960172	chr9:34960172:C:T	rs145637357	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr9	35621946	35621947	chr9:35621947:A:G	rs150711311	A	G	A	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr9	35621956	35621957	chr9:35621957:C:T	rs79596911	C	T	T	Sox3.mouse_HMG_1	3	1	+	3.6179024096210144	-2.364873708513307	AGACAATAAATTTGTAT
chr9	35646678	35646679	chr9:35646679:T:C	rs373906537	T	C	T	Sox3.mouse_HMG_1	11	1	+	10.157584225657953	4.1001281166976	GAAAAATAAAATTGTTT
chr9	35802585	35802586	chr9:35802586:C:T	rs5812	C	T	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr9	35807544	35807545	chr9:35807545:C:T	rs13294264	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr9	35882216	35882217	chr9:35882217:T:C	rs78016065	T	C	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr9	35903220	35903221	chr9:35903221:A:G	chr9:35903221:A:G	A	G	A	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr9	35948590	35948591	chr9:35948591:T:C	rs10972638	T	C	T	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr9	35954377	35954378	chr9:35954378:A:G	rs7034414	A	G	A	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr9	36122299	36122300	chr9:36122300:A:G	rs10972736	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr9	36192286	36192287	chr9:36192287:A:C	rs3780357	A	C	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr9	36303538	36303539	chr9:36303539:G:A	rs10972835	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr9	36759235	36759236	chr9:36759236:G:A	rs12235509	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr9	36949354	36949355	chr9:36949355:C:T	rs62533677	C	T	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr9	36998313	36998314	chr9:36998314:C:T	rs6476605	C	T	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr9	37302157	37302158	chr9:37302158:C:T	rs10814518	C	T	C	Sox3.mouse_HMG_1	24	0	-	0	0	.
chr9	37477605	37477606	chr9:37477606:G:A	rs146792432	G	A	G	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr9	37679946	37679947	chr9:37679947:C:A	chr9:37679947:C:A	C	A	C	Sox3.mouse_HMG_1	13	1	-	0.7378976274607822	-5.631221987934754	CAACACTGGTGGTGTTG
chr9	37693959	37693960	chr9:37693960:C:T	rs7025444	C	T	T	Sox3.mouse_HMG_1	11	1	-	2.424044367900069	-1.310433059145678	GCACAATGCCAGTGCTA
chr9	37724197	37724198	chr9:37724198:A:G	rs10814609	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr9	37727385	37727386	chr9:37727386:A:G	rs12554587	A	G	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr9	37987360	37987361	chr9:37987361:G:A	rs1384727740	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr9	38380999	38381000	chr9:38381000:A:G	rs4878798	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr9	38644531	38644532	chr9:38644532:G:A	rs12555827	G	A	g	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr9	39036298	39036299	chr9:39036299:C:G	rs414044	C	G	-	Sox3.mouse_HMG_1	13	1	-	11.000443981322737	4.89233819129682	TAACAATAACATTGATA
chr9	41097736	41097737	chr9:41097737:C:G	rs202047585	C	G	.	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr9	41533820	41533821	chr9:41533821:T:G	rs10907693	T	G	T	Sox3.mouse_HMG_1	14	1	+	2.2860560579730933	-4.140593193808904	AAAAAATGCCCTTGTAT
chr9	42347509	42347510	chr9:42347510:C:T	rs1326784622	C	T	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr9	42364609	42364610	chr9:42364610:G:C	rs77329798	G	C	g	Sox3.mouse_HMG_1	3	1	-	0.5455949368566836	-6.361440082800972	CAGCAAGCCCATTGTTT
chr9	43187484	43187485	chr9:43187485:A:T	rs1304861855	A	T	.	Sox3.mouse_HMG_1	4	1	+	2.4529793205951296	-3.861329105908697	AAACAATCTTTTTGTAG
chr9	64437997	64437998	chr9:64437998:T:A	rs373818045	T	A	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr9	66601729	66601730	chr9:66601730:A:G	rs1332257402	A	G	A	Sox3.mouse_HMG_1	9	1	+	3.0682313269908033	-1.514768292730528	AAACTATGCAAGTCTTT
chr9	68502362	68502363	chr9:68502363:T:C	rs923784	T	C	T	Sox3.mouse_HMG_1	10	1	-	11.54770424699189	4.6394590880205495	AAACAATTGTACTGTTT
chr9	68513879	68513880	chr9:68513880:C:T	rs10868961	C	T	C	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr9	68604169	68604170	chr9:68604170:C:T	rs952436	C	T	C	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr9	68741102	68741103	chr9:68741103:G:T	rs11143589	G	T	T	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr9	68782817	68782818	chr9:68782818:A:G	rs1412988	A	G	A	Sox3.mouse_HMG_1	14	1	-	5.60479988036712	-0.5050910348815869	TAACAATTCCTGTGTTG
chr9	68782830	68782831	chr9:68782831:T:C	rs2017	T	C	T	Sox3.mouse_HMG_1	1	1	-	5.60479988036712	1.2773665369644274	TAACAATTCCTGTGTTG
chr9	68925125	68925126	chr9:68925126:A:T	rs7035892	A	T	T	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr9	68942424	68942425	chr9:68942425:A:G	rs3829061	A	G	A	Sox3.mouse_HMG_1	5	1	+	7.969416104102489	1.2432826268000339	CAACAATAAAAGGGTTT
chr9	69492924	69492925	chr9:69492925:G:C	rs4744569	G	C	C	Sox3.mouse_HMG_1	11	1	+	2.2032414271735115	-1.726236014925962	TAAAAATTACAGAGTTT
chr9	69945954	69945955	chr9:69945955:G:A	rs11140986	G	A	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr9	70034293	70034294	chr9:70034294:G:C	rs12553082	G	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr9	70081651	70081652	chr9:70081652:A:G	rs1986412	A	G	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr9	70565198	70565199	chr9:70565199:G:T	rs12351436	G	T	G	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr9	70682519	70682520	chr9:70682520:A:G	rs4237243	A	G	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr9	70747477	70747478	chr9:70747478:C:T	rs10511986	C	T	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr9	70850620	70850621	chr9:70850621:T:G	rs7032799	T	G	G	Sox3.mouse_HMG_1	3	1	+	7.356863007282434	6.432604105759102	AAATAATAACATTTTTT
chr9	71029899	71029900	chr9:71029900:A:G	rs11142672	A	G	a	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr9	71038952	71038953	chr9:71038953:T:A	rs594380	T	A	T	Sox3.mouse_HMG_1	8	1	-	1.4027572313079042	0.582935992839371	AAATAGTGATACTGTTT
chr9	71255903	71255904	chr9:71255904:A:G	rs1504404	A	G	A	Sox3.mouse_HMG_1	12	1	-	4.994567583055101	-1.2118980021627512	AAACAAGATAATTGTGG
chr9	71279489	71279490	chr9:71279490:A:C	rs4745078	A	C	A	Sox3.mouse_HMG_1	9	1	+	2.4721714801439783	3.925815866973079	AAAAAATGAAACTGTAT
chr9	71541256	71541257	chr9:71541257:A:G	rs10512000	A	G	A	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr9	71592602	71592603	chr9:71592603:G:A	rs72737923	G	A	G	Sox3.mouse_HMG_1	0	1	-	1.5414799294345223	1.1079171164704775	CGACAATATTAATGTGG
chr9	71592604	71592605	chr9:71592605:A:C	rs11142907	A	C	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr9	72012722	72012723	chr9:72012723:C:T	rs79833355	C	T	c	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr9	72110072	72110073	chr9:72110073:T:C	rs10735611	T	C	T	Sox3.mouse_HMG_1	7	1	+	3.974759477139949	-0.10838355304266828	GAACCATTGTATTGTGG
chr9	72151183	72151184	chr9:72151184:C:G	rs114381233	C	G	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr9	72396816	72396817	chr9:72396817:A:G	rs10869172	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr9	73039216	73039217	chr9:73039217:C:T	rs11999372	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr9	73039592	73039593	chr9:73039593:C:G	chr9:73039593:C:G	C	G	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr9	73153177	73153178	chr9:73153178:A:G	rs10869229	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr9	73242489	73242490	chr9:73242490:G:T	rs7850771	G	T	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr9	73348705	73348706	chr9:73348706:T:A	rs78711639	T	A	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr9	73411817	73411818	chr9:73411818:T:G	rs12006282	T	G	T	Sox3.mouse_HMG_1	27	0	-	0	0	.
chr9	73554849	73554850	chr9:73554850:T:A	rs437024	T	A	A	Sox3.mouse_HMG_1	36	0	-	0	0	.
chr9	73685877	73685878	chr9:73685878:T:C	rs12338710	T	C	T	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr9	74200393	74200394	chr9:74200394:T:A	rs4263838	T	A	A	Sox3.mouse_HMG_1	5	1	-	7.140051201953682	0.23159616785727188	TAACAATGAAATTGACT
chr9	74333205	74333206	chr9:74333206:T:C	rs11143925	T	C	T	Sox3.mouse_HMG_1	1	1	-	2.0838060597861676	-2.2436272836165245	CAACAAATGTACTGTTG
chr9	74344502	74344503	chr9:74344503:A:G	rs34581853	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr9	74504044	74504045	chr9:74504045:A:G	rs113427251	A	G	A	Sox3.mouse_HMG_1	1	1	-	2.2675938272128056	1.5200778572258955	ATACAATAATTTTGTCA
chr9	74953475	74953476	chr9:74953476:C:G	rs3758184	C	G	G	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr9	75113238	75113239	chr9:75113239:G:T	rs11144236	G	T	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr9	75133672	75133673	chr9:75133673:A:G	rs7857698	A	G	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr9	75151937	75151938	chr9:75151938:A:G	rs2093449	A	G	A	Sox3.mouse_HMG_1	9	1	-	6.988544559525742	7.02425068441031	GAATAATAGTATTGTCT
chr9	75185884	75185885	chr9:75185885:G:T	rs1243378078	G	T	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr9	75396824	75396825	chr9:75396825:G:A	rs75718389	G	A	G	Sox3.mouse_HMG_1	13	1	+	3.684234103588915	-2.423871686437001	GGGCAATAAAATTGTAG
chr9	75453185	75453186	chr9:75453186:A:G	rs500859	A	G	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr9	75453292	75453293	chr9:75453293:G:A	rs10122599	G	A	G	Sox3.mouse_HMG_1	3	1	-	1.4825707691641743	-4.500205348970147	CAACAAGTGCAGTGTGG
chr9	75453305	75453306	chr9:75453306:C:T	rs9314833	C	T	C	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr9	75696058	75696059	chr9:75696059:G:A	rs1328553	G	A	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr9	76335286	76335287	chr9:76335287:G:A	rs2803439	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr9	76450382	76450383	chr9:76450383:A:C	rs11144905	A	C	A	Sox3.mouse_HMG_1	6	1	-	8.269405057006352	1.3609500229099445	AAACAATGTAAGGGTTG
chr9	76534068	76534069	chr9:76534069:T:C	rs11144943	T	C	T	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr9	76634844	76634845	chr9:76634845:T:A	rs7045505	T	A	T	Sox3.mouse_HMG_1	4	1	-	4.786015072593914	-1.5282933539099124	AAACATTAGCATAGTTA
chr9	76688255	76688256	chr9:76688256:G:A	rs761319848	G	A	G	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr9	76773033	76773034	chr9:76773034:T:A	rs7025345	T	A	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr9	76835198	76835199	chr9:76835199:T:C	rs13297748	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr9	76921621	76921622	chr9:76921622:A:G	rs56253538	A	G	A	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr9	76989101	76989102	chr9:76989102:T:G	rs1929538	T	G	G	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr9	77457094	77457095	chr9:77457095:A:G	rs145309163	A	G	a	Sox3.mouse_HMG_1	12	1	-	1.1809382223526335	-5.025527362865218	AAACTTTGTAAGTGTTA
chr9	78119278	78119279	chr9:78119279:T:A	rs562213226	T	A	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr9	78130132	78130133	chr9:78130133:C:T	rs114625439	C	T	C	Sox3.mouse_HMG_1	9	1	+	0.1483079740420714	0.1126018491575036	GAACCATAGCGGTGTTA
chr9	78432381	78432382	chr9:78432382:C:T	rs11137677	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr9	79346984	79346985	chr9:79346985:T:C	rs1576192	T	C	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr9	79445904	79445905	chr9:79445905:G:T	rs11138221	G	T	T	Sox3.mouse_HMG_1	1	1	-	2.9532361953809416	8.591091091642053	ACATAATGCTATTGTAG
chr9	79664626	79664627	chr9:79664627:C:T	rs7029826	C	T	C	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr9	79701937	79701938	chr9:79701938:G:A	rs11138338	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr9	79952896	79952897	chr9:79952897:T:C	rs17729057	T	C	T	Sox3.mouse_HMG_1	12	1	+	3.470356883036095	-2.7361087021817565	GAAGAATGGTATTGGTG
chr9	80030646	80030647	chr9:80030647:G:A	rs10120252	G	A	A	Sox3.mouse_HMG_1	30	0	-	0	0	.
chr9	80030657	80030658	chr9:80030658:A:G	rs73459586	A	G	A	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr9	80176234	80176235	chr9:80176235:A:G	rs4877160	A	G	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr9	80426395	80426396	chr9:80426396:G:A	rs10512100	G	A	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr9	80670398	80670399	chr9:80670399:C:T	rs141560702	C	T	C	Sox3.mouse_HMG_1	-9	0	+	0	0	.
chr9	80676549	80676550	chr9:80676550:A:G	rs17083743	A	G	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr9	80772469	80772470	chr9:80772470:G:A	rs4483241	G	A	A	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr9	81074494	81074495	chr9:81074495:G:A	rs17268798	G	A	G	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr9	81074506	81074507	chr9:81074507:G:A	rs1929706	G	A	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr9	81146741	81146742	chr9:81146742:C:T	rs973497417	C	T	C	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr9	81146746	81146747	chr9:81146747:C:T	rs885040	C	T	T	Sox3.mouse_HMG_1	29	0	-	0	0	.
chr9	81193949	81193950	chr9:81193950:A:T	rs28438909	A	T	T	Sox3.mouse_HMG_1	8	1	+	1.4305734245086448	0.6107521860401113	AAAGATTAACATTGTAG
chr9	81490876	81490877	chr9:81490877:G:A	rs183315155	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr9	81639903	81639904	chr9:81639904:A:G	rs10867787	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr9	81752266	81752267	chr9:81752267:T:C	rs75122168	T	C	T	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr9	82717252	82717253	chr9:82717253:T:C	rs73648482	T	C	T	Sox3.mouse_HMG_1	8	1	+	2.2874469649987828	1.9747077400882407	GAAGTATTTCATTGTTG
chr9	83500571	83500572	chr9:83500572:G:C	rs572785022	G	C	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr9	84103833	84103834	chr9:84103834:A:G	rs67011780	A	G	A	Sox3.mouse_HMG_1	6	1	-	4.7320233932103335	-1.9140673764185845	AAAGAATTGTATTGTGA
chr9	84169831	84169832	chr9:84169832:A:T	rs871228	A	T	T	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr9	84754592	84754593	chr9:84754593:C:T	rs57189532	C	T	T	Sox3.mouse_HMG_1	13	1	-	2.539908548960044	-3.5681972410658718	GAAGCATAATAGTGTTT
chr9	84754622	84754623	chr9:84754623:A:G	rs75712805	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr9	84799878	84799879	chr9:84799879:A:G	rs1187287	A	G	G	Sox3.mouse_HMG_1	8	1	+	2.0502260819964198	1.023812606985783	AAACCATGATATTCATT
chr9	84924748	84924749	chr9:84924749:G:A	rs763623	G	A	G	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr9	84990870	84990871	chr9:84990871:G:A	rs11140821	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr9	86396699	86396700	chr9:86396700:T:C	rs187136	T	C	C	Sox3.mouse_HMG_1	5	1	-	1.7996686106055748	-4.9264648666968816	GAACAATTTTTTTGGTA
chr9	86434254	86434255	chr9:86434255:A:T	rs353802	A	T	T	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr9	86434256	86434257	chr9:86434257:G:A	rs181219804	G	A	G	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr9	86492090	86492091	chr9:86492091:C:T	rs115471842	C	T	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr9	86703692	86703693	chr9:86703693:T:A	rs11141498	T	A	T	Sox3.mouse_HMG_1	1	1	-	3.866771437537624	-1.0235674887365769	AAACAGTAACAGAGTTA
chr9	86810160	86810161	chr9:86810161:G:A	rs10868486	G	A	A	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr9	86925761	86925762	chr9:86925762:A:G	rs73483130	A	G	A	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr9	86990237	86990238	chr9:86990238:C:T	rs6559958	C	T	C	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr9	87035627	87035628	chr9:87035628:C:T	rs7873337	C	T	T	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr9	87064249	87064250	chr9:87064250:G:T	rs113566533	G	T	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr9	87179489	87179490	chr9:87179490:C:T	rs278664	C	T	T	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr9	87329489	87329490	chr9:87329490:A:G	rs10868558	A	G	g	Sox3.mouse_HMG_1	1	1	+	6.094721789055493	1.7672884456528004	CAACAATAAAATTCTAG
chr9	87342885	87342886	chr9:87342886:T:C	rs79849840	T	C	T	Sox3.mouse_HMG_1	11	1	+	2.653138437541701	-3.4043176714186516	AAATAATGAGATTGTGG
chr9	87370334	87370335	chr9:87370335:T:G	rs7861579	T	G	T	Sox3.mouse_HMG_1	14	1	+	3.6250401480937873	-2.80160910368821	CAGCAATTGACTTGTTT
chr9	87451282	87451283	chr9:87451283:C:T	rs1329598	C	T	C	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr9	87519774	87519775	chr9:87519775:G:A	rs12375535	G	A	G	Sox3.mouse_HMG_1	15	1	-	1.3773394343020404	5.679841232097524	AAACAATGCCACTTTCG
chr9	87563938	87563939	chr9:87563939:C:T	rs147070602	C	T	C	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr9	88218954	88218955	chr9:88218955:C:T	rs192114045	C	T	C	Sox3.mouse_HMG_1	3	1	+	0.9383914742545082	-5.0443846438798134	GGACAATCCCTTTGTTT
chr9	88218955	88218956	chr9:88218956:A:G	rs2438400	A	G	G	Sox3.mouse_HMG_1	4	1	+	0.9383914742545082	-5.873933617722728	GGACAATCCCTTTGTTT
chr9	88653266	88653267	chr9:88653267:C:T	rs28715721	C	T	T	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr9	88747331	88747332	chr9:88747332:G:T	rs28517748	G	T	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr9	88747355	88747356	chr9:88747356:G:A	rs145821518	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr9	88808695	88808696	chr9:88808696:T:G	rs2653814	T	G	G	Sox3.mouse_HMG_1	2	1	-	8.77873331072358	2.353398431002266	AGACAATGCCATTGTGA
chr9	88978213	88978214	chr9:88978214:T:C	rs117085467	T	C	T	Sox3.mouse_HMG_1	4	1	-	0.6651041995267424	-6.147220892450494	AAACATCAGCATTGTAG
chr9	88978236	88978237	chr9:88978237:G:A	rs73654712	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr9	89519585	89519586	chr9:89519586:C:T	rs117965518	C	T	C	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr9	89519589	89519590	chr9:89519590:T:C	rs147545213	T	C	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr9	89577412	89577413	chr9:89577413:G:A	rs150502786	G	A	G	Sox3.mouse_HMG_1	7	1	+	0.9686045732902293	0.4725342535129184	AAGCAGTGGCATTGCTG
chr9	89643132	89643133	chr9:89643133:T:A	rs4877118	T	A	A	Sox3.mouse_HMG_1	14	1	+	3.2412479846001014	-2.0442293640949902	AAACCATAGAAATGTTA
chr9	89720968	89720969	chr9:89720969:C:T	rs76941768	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr9	89750413	89750414	chr9:89750414:A:G	rs187042200	A	G	A	Sox3.mouse_HMG_1	11	1	-	2.245744942776926	-3.8117111661834255	ACACAATCCTATTGTGG
chr9	90053770	90053771	chr9:90053771:A:G	rs1443361	A	G	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr9	90220163	90220164	chr9:90220164:G:T	rs113246651	G	T	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr9	90477910	90477911	chr9:90477911:G:A	rs1863559	G	A	A	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr9	90739307	90739308	chr9:90739308:C:T	rs1582994	C	T	.	Sox3.mouse_HMG_1	16	1	-	5.406761845637572	4.972930400916464	GAAAAATGCTATTGTGG
chr9	90887732	90887733	chr9:90887733:T:A	rs2126053	T	A	T	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr9	91119071	91119072	chr9:91119072:T:G	rs2296751	T	G	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr9	91144100	91144101	chr9:91144101:T:C	rs12337100	T	C	T	Sox3.mouse_HMG_1	10	1	-	1.5209416260445927	-5.3873035329267465	GCACAATTAAAGAGTTG
chr9	91156066	91156067	chr9:91156067:C:T	rs10991789	C	T	C	Sox3.mouse_HMG_1	30	0	+	0	0	.
chr9	91176668	91176669	chr9:91176669:G:A	rs1705276	G	A	G	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr9	91515736	91515737	chr9:91515737:G:A	rs7028882	G	A	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr9	91557576	91557577	chr9:91557577:G:C	rs12342887	G	C	G	Sox3.mouse_HMG_1	3	1	-	4.069043024509433	-2.8379919951482186	GAACTATGCAAATGTTT
chr9	91912804	91912805	chr9:91912805:G:A	rs78819566	G	A	G	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr9	91933936	91933937	chr9:91933937:A:C	rs3858082	A	C	A	Sox3.mouse_HMG_1	5	1	+	4.180488488231598	-2.632656366060487	TAACAATAAAAGTGGAT
chr9	91947577	91947578	chr9:91947578:G:A	rs62565755	G	A	G	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr9	91992980	91992981	chr9:91992981:A:C	rs7872437	A	C	A	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr9	92019630	92019631	chr9:92019631:C:T	rs79121984	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr9	92407114	92407115	chr9:92407115:C:T	rs117516582	C	T	C	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr9	92811401	92811402	chr9:92811402:A:G	rs1853429	A	G	a	Sox3.mouse_HMG_1	10	1	+	6.022949478602387	-0.8852956803689512	CACCAATTCCATTGTAT
chr9	92888652	92888653	chr9:92888653:C:T	rs147993268	C	T	C	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr9	93109318	93109319	chr9:93109319:C:T	rs377123575	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr9	93286184	93286185	chr9:93286185:A:C	rs6479472	A	C	C	Sox3.mouse_HMG_1	14	1	-	1.967740924562066	-4.458908327219931	AAACAATAGTTTTTTAT
chr9	93297667	93297668	chr9:93297668:G:C	rs191859632	G	C	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr9	93436815	93436816	chr9:93436816:C:G	rs10992731	C	G	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr9	93467279	93467280	chr9:93467280:T:C	rs7021689	T	C	C	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr9	93619295	93619296	chr9:93619296:C:T	rs73518058	C	T	C	Sox3.mouse_HMG_1	4	1	-	1.24399496051493	8.056320052492167	CAACGAGAGCAGTGTTT
chr9	93660045	93660046	chr9:93660046:A:G	rs73523906	A	G	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr9	93730896	93730897	chr9:93730897:G:A	rs112974499	G	A	G	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr9	93869240	93869241	chr9:93869241:A:G	rs11787920	A	G	A	Sox3.mouse_HMG_1	16	1	+	3.1991506534459715	3.632982098167078	CACCAATGGCCTTGTTA
chr9	94281244	94281245	chr9:94281245:C:T	rs6479534	C	T	T	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr9	94657219	94657220	chr9:94657220:C:G	rs138090386	C	G	C	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr9	94915273	94915274	chr9:94915274:A:G	rs12235316	A	G	A	Sox3.mouse_HMG_1	20	0	+	0	0	.
chr9	95018690	95018691	chr9:95018691:A:G	rs62579892	A	G	A	Sox3.mouse_HMG_1	5	1	+	7.662880479588773	0.9367470022863174	GAAGAATGCTAGTGTTG
chr9	95018709	95018710	chr9:95018710:G:C	rs3802455	G	C	G	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr9	95215855	95215856	chr9:95215856:T:A	rs4647457	T	A	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr9	95520114	95520115	chr9:95520115:G:T	rs59631181	G	T	G	Sox3.mouse_HMG_1	0	1	-	1.4381558176925324	3.0277473300447317	CAGCAAAAGTATTGTCT
chr9	95520131	95520132	chr9:95520132:G:A	rs78843682	G	A	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr9	95524542	95524543	chr9:95524543:C:T	rs75490453	C	T	C	Sox3.mouse_HMG_1	12	1	+	5.655849519625385	11.862315104843239	AAACAATGGAAACGTTT
chr9	95690683	95690684	chr9:95690684:G:A	rs17372603	G	A	G	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr9	95789158	95789159	chr9:95789159:T:C	rs62559006	T	C	T	Sox3.mouse_HMG_1	16	1	+	5.07431308999809	1.4725164243771078	TAACAATAATATCTTTT
chr9	95794218	95794219	chr9:95794219:T:A	rs138385576	T	A	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr9	95908173	95908174	chr9:95908174:A:C	rs12684321	A	C	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr9	96122489	96122490	chr9:96122490:C:T	rs76853823	C	T	C	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr9	96261246	96261247	chr9:96261247:G:A	rs79005077	G	A	G	Sox3.mouse_HMG_1	11	1	+	2.647582001270684	-1.0868954257750634	TAGAAATGTAAGTGTTT
chr9	96328037	96328038	chr9:96328038:A:C	rs115769593	A	C	A	Sox3.mouse_HMG_1	12	1	-	1.434400836159646	-5.133727234507977	GAACTATGCAAGTTTTT
chr9	96501538	96501539	chr9:96501539:A:G	rs10820739	A	G	a	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr9	96682646	96682647	chr9:96682647:T:G	rs10978574	T	G	T	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr9	97013953	97013954	chr9:97013954:A:T	rs138981458	A	T	a	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr9	97292422	97292423	chr9:97292423:T:C	rs2615143	T	C	C	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr9	97385151	97385152	chr9:97385152:T:C	rs10759644	T	C	C	Sox3.mouse_HMG_1	12	1	+	6.108466920352829	-0.09799866486502296	ATGCAATTCCAGTGTTT
chr9	97395769	97395770	chr9:97395770:T:C	rs1020884	T	C	T	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr9	97407735	97407736	chr9:97407736:G:A	rs55712525	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr9	97749048	97749049	chr9:97749049:C:T	rs16924016	C	T	C	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr9	97772920	97772921	chr9:97772921:C:G	rs7030256	C	G	G	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr9	97995060	97995061	chr9:97995061:A:G	rs872251	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr9	98103515	98103516	chr9:98103516:A:C	rs7872652	A	C	C	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr9	98164972	98164973	chr9:98164973:A:C	rs10985257	A	C	A	Sox3.mouse_HMG_1	11	1	-	2.1958492965342264	0.0678706296733469	AAAAAAAAGAATTGTTA
chr9	98165264	98165265	chr9:98165265:T:C	rs7032570	T	C	T	Sox3.mouse_HMG_1	0	1	+	10.579332334996867	11.012895147960911	TAACAATTCTATTGTAA
chr9	98187519	98187520	chr9:98187520:A:G	rs4743182	A	G	G	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr9	98228635	98228636	chr9:98228636:A:C	chr9:98228636:A:C	A	C	A	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr9	98750752	98750753	chr9:98750753:C:T	rs961136784	C	T	C	Sox3.mouse_HMG_1	-6	0	+	0	0	.
chr9	98750762	98750763	chr9:98750763:A:C	rs990985926	A	C	A	Sox3.mouse_HMG_1	4	1	+	3.894611713627955	-2.8307020013596524	CAACAAAAAAAATGTTT
chr9	98750781	98750782	chr9:98750782:G:C	rs180039	G	C	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr9	98779166	98779167	chr9:98779167:G:A	rs147385396	G	A	G	Sox3.mouse_HMG_1	1	1	+	0.6459123754671984	4.97334571886989	AGACAAGACCAGTGTGT
chr9	99056433	99056434	chr9:99056434:T:C	rs11788317	T	C	C	Sox3.mouse_HMG_1	-2	0	-	0	0	.
chr9	99346134	99346135	chr9:99346135:G:A	rs147138188	G	A	G	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr9	99359506	99359507	chr9:99359507:A:G	chr9:99359507:A:G	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr9	99359556	99359557	chr9:99359557:G:A	rs77682886	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr9	99690289	99690290	chr9:99690290:T:C	rs72744672	T	C	T	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr9	100113898	100113899	chr9:100113899:T:C	rs7846794	T	C	C	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr9	100438068	100438069	chr9:100438069:T:G	rs560161009	T	G	T	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr9	100438090	100438091	chr9:100438091:A:G	rs117222978	A	G	A	Sox3.mouse_HMG_1	4	1	+	4.277537355479547	-2.53478773649769	GAAGAATTACATTGCTT
chr9	101466548	101466549	chr9:101466549:G:A	rs187257427	G	A	G	Sox3.mouse_HMG_1	11	1	-	1.4746117070220701	7.532067815982423	AAACAATGACCCTCTTT
chr9	101663079	101663080	chr9:101663080:G:A	rs16920640	G	A	G	Sox3.mouse_HMG_1	-5	0	-	0	0	.
chr9	101675090	101675091	chr9:101675091:G:T	rs7469637	G	T	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr9	101689357	101689358	chr9:101689358:G:A	rs2485536	G	A	g	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr9	102046573	102046574	chr9:102046574:T:C	rs10820041	T	C	T	Sox3.mouse_HMG_1	24	0	+	0	0	.
chr9	102077131	102077132	chr9:102077132:T:C	rs10820047	T	C	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr9	102587566	102587567	chr9:102587567:A:G	rs77289227	A	G	A	Sox3.mouse_HMG_1	-15	0	+	0	0	.
chr9	102746228	102746229	chr9:102746229:T:G	rs76495851	T	G	T	Sox3.mouse_HMG_1	9	1	-	2.7011102733287977	4.154754660157898	GAACATTGAAATTTTTA
chr9	102867634	102867635	chr9:102867635:A:C	rs843278	A	C	C	Sox3.mouse_HMG_1	1	1	+	4.112998052092543	-1.5248568441685653	AAACAATACCAGTTTGA
chr9	102867664	102867665	chr9:102867665:A:G	rs75011458	A	G	A	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr9	103071985	103071986	chr9:103071986:A:T	rs10990509	A	T	A	Sox3.mouse_HMG_1	9	1	-	4.102297351302826	2.6843590893582947	AAATAATAATATTGACT
chr9	103707364	103707365	chr9:103707365:A:G	rs113313647	A	G	A	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr9	104091222	104091223	chr9:104091223:G:A	rs1999153	G	A	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr9	104777070	104777071	chr9:104777071:T:C	rs2482430	T	C	C	Sox3.mouse_HMG_1	2	1	-	8.70717032726579	4.299235348285328	AGACAATGGTATTATTT
chr9	104832082	104832083	chr9:104832083:A:G	rs2515629	A	G	A	Sox3.mouse_HMG_1	5	1	+	3.1938598933023696	-3.532273584000084	AAACAATGATCTTATCT
chr9	104875024	104875025	chr9:104875025:A:G	rs59237458	A	G	g	Sox3.mouse_HMG_1	4	1	+	3.3648779938465005	-3.4474470981307355	TGACAATGGCAGTTTTG
chr9	104882269	104882270	chr9:104882270:C:T	rs79252500	C	T	C	Sox3.mouse_HMG_1	-12	0	-	0	0	.
chr9	104912746	104912747	chr9:104912747:G:C	rs11792330	G	C	G	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr9	104923144	104923145	chr9:104923145:C:T	rs534906980	C	T	C	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr9	105718669	105718670	chr9:105718670:A:G	rs141702558	A	G	A	Sox3.mouse_HMG_1	5	1	+	2.830852069185183	-3.895281408117273	AAACAATAACTTGGTAT
chr9	106536972	106536973	chr9:106536973:C:T	rs10978518	C	T	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr9	107046977	107046978	chr9:107046978:G:A	rs6477555	G	A	A	Sox3.mouse_HMG_1	13	1	+	4.354353211693815	-1.7537525783321006	TAACAACAACATTGATA
chr9	107176814	107176815	chr9:107176815:C:T	rs12340562	C	T	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr9	107270216	107270217	chr9:107270217:G:T	rs12345455	G	T	T	Sox3.mouse_HMG_1	3	1	-	6.319259861988467	-0.40545360087523585	ACACGATGATATTGTTA
chr9	107539349	107539350	chr9:107539350:G:C	rs76734555	G	C	G	Sox3.mouse_HMG_1	2	1	-	0.44459977011495255	2.461999670855805	AACCAATGACGTTGGTT
chr9	107645670	107645671	chr9:107645671:G:C	rs940291	G	C	G	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr9	107751067	107751068	chr9:107751068:T:C	rs77966123	T	C	T	Sox3.mouse_HMG_1	6	1	+	7.016261281966077	0.3701705123371587	CAAGAATTGCAGTGTTT
chr9	107814668	107814669	chr9:107814669:C:G	rs77621408	C	G	C	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr9	107862936	107862937	chr9:107862937:C:G	rs76978680	C	G	C	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr9	107898701	107898702	chr9:107898702:A:G	rs34048749	A	G	A	Sox3.mouse_HMG_1	16	1	-	3.1899599002126013	-0.41183676540838077	AAACTATACTGGTGTTT
chr9	107933109	107933110	chr9:107933110:A:G	rs74941932	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.1774339017448034	-5.548699575557652	AATCAATGGCAGTTTTC
chr9	108053746	108053747	chr9:108053747:G:A	rs980392401	G	A	G	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr9	108656926	108656927	chr9:108656927:T:G	rs28372166	T	G	T	Sox3.mouse_HMG_1	5	1	-	4.33507002741829	-2.4780748268737947	AAAGAATGCCAGTGTCA
chr9	108844914	108844915	chr9:108844915:T:C	rs4358865	T	C	T	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr9	108860694	108860695	chr9:108860695:G:A	rs11794127	G	A	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr9	108972882	108972883	chr9:108972883:G:A	rs73526161	G	A	G	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr9	109036044	109036045	chr9:109036045:C:A	rs6477686	C	A	A	Sox3.mouse_HMG_1	15	1	+	6.4691876538794055	7.274845829882418	AAACAATACTATTTTCA
chr9	109036058	109036059	chr9:109036059:T:C	rs72760315	T	C	T	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr9	109073333	109073334	chr9:109073334:T:C	rs11792149	T	C	T	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr9	109254425	109254426	chr9:109254426:C:A	rs10979772	C	A	C	Sox3.mouse_HMG_1	3	1	-	4.91160383213821	5.835862733661542	AAAGAATTATTTTGTTT
chr9	109318706	109318707	chr9:109318707:A:G	rs72746939	A	G	A	Sox3.mouse_HMG_1	2	1	+	3.841005897174541	-0.5669290818059198	GAACAGTAACATTTTTA
chr9	109321341	109321342	chr9:109321342:G:A	rs7039841	G	A	G	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr9	109574485	109574486	chr9:109574486:A:G	chr9:109574486:A:G	A	G	A	Sox3.mouse_HMG_1	33	0	-	0	0	.
chr9	109574513	109574514	chr9:109574514:T:C	rs145866260	T	C	T	Sox3.mouse_HMG_1	5	1	-	10.79761157467585	4.071478097373393	TAGCAATAGAATTGTTT
chr9	109604354	109604355	chr9:109604355:G:A	rs4978839	G	A	G	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr9	109770928	109770929	chr9:109770929:A:C	rs7031682	A	C	C	Sox3.mouse_HMG_1	15	1	+	2.2345267751417577	1.4288685991387453	AATGAATACTATTGTAT
chr9	109770932	109770933	chr9:109770933:C:T	rs62578128	C	T	C	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr9	109774148	109774149	chr9:109774149:G:A	rs7022209	G	A	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr9	110021825	110021826	chr9:110021826:A:G	rs75823150	A	G	A	Sox3.mouse_HMG_1	11	1	-	0.9350731736926425	-5.1223829352677095	AAGCTGTGTTATTGTTG
chr9	110082839	110082840	chr9:110082840:A:G	rs113589812	A	G	A	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr9	110114082	110114083	chr9:110114083:G:A	rs80208599	G	A	G	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr9	110191708	110191709	chr9:110191709:C:T	rs76360042	C	T	C	Sox3.mouse_HMG_1	9	1	+	7.232602349479954	7.196896224595385	AAACAATGCCAGTGCTC
chr9	110450994	110450995	chr9:110450995:G:C	rs72746759	G	C	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr9	110522590	110522591	chr9:110522591:C:T	rs2184245	C	T	A	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr9	110623355	110623356	chr9:110623356:A:G	rs7028039	A	G	G	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr9	110820391	110820392	chr9:110820392:A:C	rs12553421	A	C	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr9	110928577	110928578	chr9:110928578:A:G	rs116985942	A	G	A	Sox3.mouse_HMG_1	25	0	+	0	0	.
chr9	111150272	111150273	chr9:111150273:A:G	rs10980797	A	G	A	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr9	111150279	111150280	chr9:111150280:T:G	rs12339013	T	G	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr9	111316946	111316947	chr9:111316947:T:A	rs314449	T	A	A	Sox3.mouse_HMG_1	3	1	+	6.218193747173833	5.476256402444456	AAATAATAACATTATTA
chr9	111353728	111353729	chr9:111353729:T:C	rs35381875	T	C	T	Sox3.mouse_HMG_1	10	1	-	3.368268542178854	-3.5399766167924853	GATCAACAAAATTGTTG
chr9	111839942	111839943	chr9:111839943:A:T	rs2018148	A	T	T	Sox3.mouse_HMG_1	2	1	+	5.161281275723956	-0.7408054602328072	AAAAAATAAAATTTTTT
chr9	111876317	111876318	chr9:111876318:C:T	rs10759513	C	T	C	Sox3.mouse_HMG_1	23	0	+	0	0	.
chr9	111909454	111909455	chr9:111909455:A:G	rs62573863	A	G	G	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr9	111984444	111984445	chr9:111984445:T:C	rs6477871	T	C	T	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr9	111995065	111995066	chr9:111995066:A:C	rs2805484	A	C	C	Sox3.mouse_HMG_1	20	0	-	0	0	.
chr9	112056194	112056195	chr9:112056195:G:A	rs10981238	G	A	A	Sox3.mouse_HMG_1	-10	0	-	0	0	.
chr9	112168166	112168167	chr9:112168167:G:C	rs10817275	G	C	C	Sox3.mouse_HMG_1	32	0	+	0	0	.
chr9	112437544	112437545	chr9:112437545:G:A	rs7866567	G	A	G	Sox3.mouse_HMG_1	17	0	+	0	0	.
chr9	112488114	112488115	chr9:112488115:A:G	rs148657357	A	G	A	Sox3.mouse_HMG_1	-2	0	+	0	0	.
chr9	112824199	112824200	chr9:112824200:T:G	rs17743418	T	G	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr9	112867968	112867969	chr9:112867969:C:T	rs4979174	C	T	C	Sox3.mouse_HMG_1	8	1	+	1.0894289902462675	1.4021682151568098	GGACAATGCCAGAGTGT
chr9	113058238	113058239	chr9:113058239:G:A	rs72756132	G	A	g	Sox3.mouse_HMG_1	-17	0	+	0	0	.
chr9	113153974	113153975	chr9:113153975:A:G	rs7856379	A	G	G	Sox3.mouse_HMG_1	6	1	-	6.139292355298085	-0.5067984143308347	CAACAATAACAGTGAGT
chr9	113233763	113233764	chr9:113233764:T:C	rs10759631	T	C	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr9	113313516	113313517	chr9:113313517:T:C	rs10817477	T	C	T	Sox3.mouse_HMG_1	26	0	-	0	0	.
chr9	113484373	113484374	chr9:113484374:T:C	rs72761903	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr9	113484411	113484412	chr9:113484412:T:C	rs72761904	T	C	T	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr9	113571319	113571320	chr9:113571320:C:T	rs78997808	C	T	C	Sox3.mouse_HMG_1	12	1	-	2.841189691749342	3.8211256887838534	AAATAATATCATGGTAT
chr9	113615263	113615264	chr9:113615264:T:C	rs79222753	T	C	T	Sox3.mouse_HMG_1	6	1	+	2.8564515497643277	-3.7896392198645943	GATCAATGCCTGTGTTT
chr9	113893119	113893120	chr9:113893120:G:A	rs75293905	G	A	G	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr9	113986108	113986109	chr9:113986109:A:G	rs148054353	A	G	A	Sox3.mouse_HMG_1	5	1	+	1.034420121396901	-5.691713355905555	TAACAATGGTCGTGGTG
chr9	114015728	114015729	chr9:114015729:T:C	rs10759677	T	C	T	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr9	114015738	114015739	chr9:114015739:T:C	rs4979323	T	C	C	Sox3.mouse_HMG_1	9	1	-	6.14247963079986	1.5594800110785285	GGACATTGAAATTGTTT
chr9	114125786	114125787	chr9:114125787:C:T	rs2217541	C	T	C	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr9	114278178	114278179	chr9:114278179:G:A	rs112446757	G	A	G	Sox3.mouse_HMG_1	-7	0	+	0	0	.
chr9	114434990	114434991	chr9:114434991:C:A	chr9:114434991:C:A	C	A	C	Sox3.mouse_HMG_1	12	1	-	0.3346074721884894	6.902735542856112	GAACAATGGTCTGGTCT
chr9	114583081	114583082	chr9:114583082:T:A	rs7019057	T	A	T	Sox3.mouse_HMG_1	-4	0	-	0	0	.
chr9	114644100	114644101	chr9:114644101:A:G	rs2183018	A	G	A	Sox3.mouse_HMG_1	29	0	+	0	0	.
chr9	114670857	114670858	chr9:114670858:A:G	rs59727257	A	G	A	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr9	114893656	114893657	chr9:114893657:A:G	rs138262172	A	G	A	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr9	115357085	115357086	chr9:115357086:C:T	rs10982705	C	T	T	Sox3.mouse_HMG_1	2	1	-	7.3340601016350835	11.741995080615544	AAGTAATGGAATTGTTT
chr9	115394240	115394241	chr9:115394241:G:A	rs10817761	G	A	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr9	115596633	115596634	chr9:115596634:G:A	rs7467290	G	A	G	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr9	115849900	115849901	chr9:115849901:G:C	rs739343	G	C	C	Sox3.mouse_HMG_1	3	1	-	3.424819637342707	-3.482215382314946	AAACAACATTATTGAAT
chr9	116156256	116156257	chr9:116156257:A:C	rs10983069	A	C	A	Sox3.mouse_HMG_1	10	1	+	2.8995031590049822	-3.66515229557628	TAACTATGTAAGTGTGT
chr9	116232540	116232541	chr9:116232541:C:T	chr9:116232541:C:T	C	T	C	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr9	116404940	116404941	chr9:116404941:C:T	rs1858015	C	T	T	Sox3.mouse_HMG_1	19	0	+	0	0	.
chr9	116431042	116431043	chr9:116431043:C:T	rs1396043	C	T	C	Sox3.mouse_HMG_1	23	0	-	0	0	.
chr9	116728058	116728059	chr9:116728059:G:A	rs10983328	G	A	G	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr9	117349020	117349021	chr9:117349021:T:C	rs7874694	T	C	C	Sox3.mouse_HMG_1	-15	0	-	0	0	.
chr9	117449844	117449845	chr9:117449845:T:C	rs10818038	T	C	t	Sox3.mouse_HMG_1	-7	0	-	0	0	.
chr9	117618967	117618968	chr9:117618968:G:A	rs6478311	G	A	A	Sox3.mouse_HMG_1	36	0	+	0	0	.
chr9	117677789	117677790	chr9:117677790:A:G	chr9:117677790:A:G	A	G	A	Sox3.mouse_HMG_1	11	1	+	2.8755625755091225	6.61004000255487	GAACAATGCAAATATTA
chr9	117737304	117737305	chr9:117737305:C:A	rs114291380	C	A	C	Sox3.mouse_HMG_1	-3	0	+	0	0	.
chr9	118034326	118034327	chr9:118034327:G:A	rs2806097	G	A	G	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr9	118170198	118170199	chr9:118170199:T:C	rs544015562	T	C	T	Sox3.mouse_HMG_1	6	1	+	2.1149380045606776	-4.531152765068242	GGACAATAGCCTTGTCT
chr9	118529465	118529466	chr9:118529466:G:A	rs7037164	G	A	A	Sox3.mouse_HMG_1	18	0	+	0	0	.
chr9	119037224	119037225	chr9:119037225:A:G	rs10818269	A	G	A	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr9	119269224	119269225	chr9:119269225:C:T	rs538025	C	T	T	Sox3.mouse_HMG_1	13	1	-	3.511728812191807	-2.596376977834109	TAAAAATAATAGTGATT
chr9	119588414	119588415	chr9:119588415:G:A	rs12000630	G	A	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr9	119736447	119736448	chr9:119736448:T:C	rs16908885	T	C	T	Sox3.mouse_HMG_1	5	1	-	6.363801227718778	-0.3623322495836766	AAACAATGCTCTTATTT
chr9	120016657	120016658	chr9:120016658:G:A	rs183541202	G	A	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr9	120243292	120243293	chr9:120243293:T:A	rs10984879	T	A	t	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr9	120650531	120650532	chr9:120650532:A:T	rs144177743	A	T	A	Sox3.mouse_HMG_1	11	1	-	2.2249023409060187	-3.637553753000608	GAGCAATGTCTTTGTGT
chr9	120853462	120853463	chr9:120853463:G:A	rs34674181	G	A	A	Sox3.mouse_HMG_1	7	1	+	8.853664916958744	8.357594597181434	CAACAATGAAGTTGTTA
chr9	120943029	120943030	chr9:120943030:A:G	rs12003088	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.
chr9	120946385	120946386	chr9:120946386:T:A	rs10818489	T	A	T	Sox3.mouse_HMG_1	34	0	-	0	0	.
chr9	121926858	121926859	chr9:121926859:C:T	rs59674180	C	T	C	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr9	122186766	122186767	chr9:122186767:A:G	rs2039197	A	G	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr9	122334975	122334976	chr9:122334976:C:T	rs140828100	C	T	C	Sox3.mouse_HMG_1	-12	0	+	0	0	.
chr9	122898252	122898253	chr9:122898253:C:G	rs10985809	C	G	C	Sox3.mouse_HMG_1	15	1	+	7.044157522091298	6.780240462280746	AAACAAAAAAATTGTCT
chr9	122903895	122903896	chr9:122903896:G:A	chr9:122903896:G:A	G	A	G	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr9	123028391	123028392	chr9:123028392:C:T	rs116898758	C	T	C	Sox3.mouse_HMG_1	7	1	+	2.1319309924834093	6.215074022666025	AAACAATCATAAAGTTG
chr9	123320253	123320254	chr9:123320254:A:G	rs72755120	A	G	A	Sox3.mouse_HMG_1	-16	0	-	0	0	.
chr9	123523830	123523831	chr9:123523831:G:C	rs72757115	G	C	G	Sox3.mouse_HMG_1	17	0	-	0	0	.
chr9	123528825	123528826	chr9:123528826:A:G	rs142091683	A	G	A	Sox3.mouse_HMG_1	-16	0	+	0	0	.
chr9	123544010	123544011	chr9:123544011:A:C	rs12335550	A	C	A	Sox3.mouse_HMG_1	35	0	-	0	0	.
chr9	123642802	123642803	chr9:123642803:G:A	rs117996279	G	A	G	Sox3.mouse_HMG_1	-11	0	+	0	0	.
chr9	123682971	123682972	chr9:123682972:G:A	rs7046260	G	A	G	Sox3.mouse_HMG_1	9	1	-	2.4842168286247994	2.4485107037402316	AAGCAGTCACATTGTTG
chr9	123928941	123928942	chr9:123928942:A:G	rs7872162	A	G	A	Sox3.mouse_HMG_1	6	1	-	3.4477732156553804	-3.198317553973543	GACTAATAGAATTGTTT
chr9	124142741	124142742	chr9:124142742:A:T	rs9409272	A	T	T	Sox3.mouse_HMG_1	14	1	-	5.502668277571535	0.21719092887644398	AAACAATAATGATGTTA
chr9	124174633	124174634	chr9:124174634:G:T	rs10986262	G	T	G	Sox3.mouse_HMG_1	25	0	-	0	0	.
chr9	124657470	124657471	chr9:124657471:T:C	rs17324169	T	C	T	Sox3.mouse_HMG_1	-19	0	+	0	0	.
chr9	124734354	124734355	chr9:124734355:T:C	rs74519450	T	C	T	Sox3.mouse_HMG_1	-8	0	+	0	0	.
chr9	125053867	125053868	chr9:125053868:T:C	rs600310	T	C	T	Sox3.mouse_HMG_1	4	1	+	8.919566403440117	8.508561114956338	TAACTATGTCAGTGTTT
chr9	125932005	125932006	chr9:125932006:C:T	rs147911174	C	T	C	Sox3.mouse_HMG_1	31	0	+	0	0	.
chr9	126001633	126001634	chr9:126001634:T:C	rs139310645	T	C	T	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr9	126425119	126425120	chr9:126425120:A:G	rs7018672	A	G	-	Sox3.mouse_HMG_1	10	1	+	5.6394931332345966	-1.2687520257367422	TAACAATTACATTCTAA
chr9	126701333	126701334	chr9:126701334:C:T	rs3906146	C	T	T	Sox3.mouse_HMG_1	-18	0	-	0	0	.
chr9	126716628	126716629	chr9:126716629:C:T	rs10760452	C	T	T	Sox3.mouse_HMG_1	-9	0	-	0	0	.
chr9	126806234	126806235	chr9:126806235:T:C	rs113562670	T	C	T	Sox3.mouse_HMG_1	-13	0	+	0	0	.
chr9	126938125	126938126	chr9:126938126:C:G	rs546493	C	G	G	Sox3.mouse_HMG_1	21	0	-	0	0	.
chr9	127014435	127014436	chr9:127014436:A:G	rs556689710	A	G	A	Sox3.mouse_HMG_1	32	0	-	0	0	.
chr9	127036101	127036102	chr9:127036102:A:G	rs777469985	A	G	A	Sox3.mouse_HMG_1	1	1	+	4.75767967391333	0.4302463305106371	GAACAATTGTGTTGTGT
chr9	127036108	127036109	chr9:127036109:G:C	rs75981611	G	C	G	Sox3.mouse_HMG_1	8	1	+	4.75767967391333	4.65153268554489	GAACAATTGTGTTGTGT
chr9	127036134	127036135	chr9:127036135:A:T	rs557535168	A	T	A	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr9	127389304	127389305	chr9:127389305:T:C	rs45526734	T	C	t	Sox3.mouse_HMG_1	11	1	+	3.979301146321927	-2.078154962638426	CAACAGTGATGTTGTTG
chr9	127614007	127614008	chr9:127614008:T:C	rs10819302	T	C	T	Sox3.mouse_HMG_1	5	1	-	2.0521221707143242	-4.6740113065881355	GTACAATGAAGGTGTTA
chr9	127763764	127763765	chr9:127763765:G:A	rs4836578	G	A	A	Sox3.mouse_HMG_1	26	0	+	0	0	.
chr9	127769984	127769985	chr9:127769985:T:C	rs117929733	T	C	T	Sox3.mouse_HMG_1	12	1	+	3.5238826585254053	-2.682582926692446	TGACAATTCCAGTGTGG
chr9	127976450	127976451	chr9:127976451:C:T	rs13302576	C	T	C	Sox3.mouse_HMG_1	22	0	+	0	0	.
chr9	127983747	127983748	chr9:127983748:A:G	rs143041339	A	G	A	Sox3.mouse_HMG_1	-17	0	-	0	0	.
chr9	129413467	129413468	chr9:129413468:T:C	chr9:129413468:T:C	T	C	T	Sox3.mouse_HMG_1	6	1	+	2.69035331343793	-3.9557374561909864	AAACAATAACAGTAAAT
chr9	129427202	129427203	chr9:129427203:G:T	rs79385872	G	T	g	Sox3.mouse_HMG_1	-14	0	-	0	0	.
chr9	129857373	129857374	chr9:129857374:T:C	rs10116273	T	C	C	Sox3.mouse_HMG_1	5	1	-	1.9133562017136247	-4.812777275588829	AAACAATGGAATCATAT
chr9	130020159	130020160	chr9:130020160:G:A	rs12001851	G	A	G	Sox3.mouse_HMG_1	34	0	+	0	0	.
chr9	130106924	130106925	chr9:130106925:C:T	rs11788668	C	T	C	Sox3.mouse_HMG_1	19	0	-	0	0	.
chr9	130254620	130254621	chr9:130254621:C:T	rs10819622	C	T	C	Sox3.mouse_HMG_1	-13	0	-	0	0	.
chr9	130254627	130254628	chr9:130254628:A:T	rs4260978	A	T	A	Sox3.mouse_HMG_1	-20	0	-	0	0	.
chr9	130291174	130291175	chr9:130291175:C:T	rs4837491	C	T	T	Sox3.mouse_HMG_1	-8	0	-	0	0	.
chr9	130308348	130308349	chr9:130308349:G:T	rs10819633	G	T	G	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr9	130538179	130538180	chr9:130538180:G:A	rs6597563	G	A	A	Sox3.mouse_HMG_1	-5	0	+	0	0	.
chr9	130538212	130538213	chr9:130538213:G:C	rs7869103	G	C	C	Sox3.mouse_HMG_1	28	0	+	0	0	.
chr9	131076636	131076637	chr9:131076637:A:G	rs928674	A	G	G	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr9	131150207	131150208	chr9:131150208:A:G	rs11244305	A	G	A	Sox3.mouse_HMG_1	-10	0	+	0	0	.
chr9	131361760	131361761	chr9:131361761:G:A	rs10901052	G	A	G	Sox3.mouse_HMG_1	35	0	+	0	0	.
chr9	131518374	131518375	chr9:131518375:C:T	rs113628769	C	T	C	Sox3.mouse_HMG_1	-6	0	-	0	0	.
chr9	131916532	131916533	chr9:131916533:G:C	rs12555726	G	C	G	Sox3.mouse_HMG_1	31	0	-	0	0	.
chr9	132295317	132295318	chr9:132295318:A:G	rs117147061	A	G	A	Sox3.mouse_HMG_1	-20	0	+	0	0	.
chr9	132651313	132651314	chr9:132651314:G:C	rs11243862	G	C	G	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr9	132673853	132673854	chr9:132673854:A:C	rs755729	A	C	A	Sox3.mouse_HMG_1	-14	0	+	0	0	.
chr9	132732243	132732244	chr9:132732244:C:A	rs1799686	C	A	C	Sox3.mouse_HMG_1	27	0	+	0	0	.
chr9	132745422	132745423	chr9:132745423:G:A	rs77988849	G	A	G	Sox3.mouse_HMG_1	-3	0	-	0	0	.
chr9	132793840	132793841	chr9:132793841:T:C	rs1410969	T	C	t	Sox3.mouse_HMG_1	-19	0	-	0	0	.
chr9	133102499	133102500	chr9:133102500:G:A	rs143632195	G	A	G	Sox3.mouse_HMG_1	11	1	+	0.28511760521115237	-3.4493598218345958	TGACAATGGCTGTGTTC
chr9	133122510	133122511	chr9:133122511:C:T	rs35528861	C	T	C	Sox3.mouse_HMG_1	18	0	-	0	0	.
chr9	134037773	134037774	chr9:134037774:T:C	rs112892449	T	C	T	Sox3.mouse_HMG_1	21	0	+	0	0	.
chr9	134493801	134493802	chr9:134493802:T:C	rs12349921	T	C	C	Sox3.mouse_HMG_1	22	0	-	0	0	.
chr9	135127879	135127880	chr9:135127880:T:G	rs12380578	T	G	G	Sox3.mouse_HMG_1	-18	0	+	0	0	.
chr9	135554867	135554868	chr9:135554868:C:G	rs10776819	C	G	C	Sox3.mouse_HMG_1	11	1	-	3.0045038713539887	-0.9249735707454839	AAACAACTCAAGTGTCT
chr9	135666911	135666912	chr9:135666912:C:T	rs137872207	C	T	c	Sox3.mouse_HMG_1	-11	0	-	0	0	.
chr9	135946293	135946294	chr9:135946294:T:C	rs7028495	T	C	C	Sox3.mouse_HMG_1	12	1	+	1.870528846466839	-4.335936738751013	AAACAATTCCACTGCAT
chr9	137678075	137678076	chr9:137678076:A:G	rs113838906	A	G	A	Sox3.mouse_HMG_1	-4	0	+	0	0	.